BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004281
(764 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 350/775 (45%), Positives = 438/775 (56%), Gaps = 193/775 (24%)
Query: 3 DRRSELVVDEFEKLLGEIPNATSGNTHSEDTGPKRVSSNYILPPITVNSSKGPLAEKLKN 62
D+R +DEFEKLLGEIP TSGN +Y PI ++SS+
Sbjct: 2 DQRRGNELDEFEKLLGEIPKVTSGN-------------DYNHFPICLSSSRS-------- 40
Query: 63 NGNLDEGKILVNKSQQSPIKRIPQEEANLPDDQSLTSAFAELRFNGGIPIEPVSPWANCN 122
IK++ Q LPDD++ T++F+E + GIP N
Sbjct: 41 ----------------QSIKKVDQY---LPDDRAFTTSFSEANLHFGIP----------N 71
Query: 123 SSPNYAVLLDCQHPNGLKEPVSNVDSQLMVASSFQSTNSVPSGFDEFDLTKVRQESSNMV 182
+P + HP L + S+ S ++ P +D+FD K
Sbjct: 72 HTP------ESPHP-------------LFINPSYHSPSNSPCVYDKFDSRK--------- 103
Query: 183 NLDVQELKKL-QVGYRQPVENFSGALPNAHSLQGFRFLSNVPVPGVEFPVMSDPQQYFAD 241
LD +KL QVGY LPN LS+ P A
Sbjct: 104 -LDPVMFRKLQQVGY----------LPN---------LSSGISP--------------AQ 129
Query: 242 TQSSFPYLHSQHLN--QPPISWRNIDQEQYHRMQQQYLYLQQLRNQRSESQHP----IQQ 295
Q P HSQ L+ Q P++WR+I++E + R+ +L+ ++ S +P +Q
Sbjct: 130 RQHYLP--HSQPLSHYQSPMTWRDIEEENFQRL--------KLQEEQYLSINPHFLHLQS 179
Query: 296 NGSIPSKLMGRTMRQPCFEMPNRLEQSNQEQFWDAYAVPRGINHLNSAFSSTDCNPMHVL 355
++P RQ F+ R EQSN+ FW+ D N
Sbjct: 180 MDTVP--------RQDHFDY-RRAEQSNRNLFWNG----------------EDGNE---- 210
Query: 356 GKVGKQSFPEKILTRSQ-GLNTLKAVKFGTVGGHESLNHINQSGKLLSNGHLCLSLSTPN 414
V K +PEKIL RSQ LNT K +K+G G ES Q+G+L L L
Sbjct: 211 -SVRKMCYPEKILMRSQMDLNTAKVIKYG--AGDES-----QNGRLWLQNQLNEDL---- 258
Query: 415 AGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISE 474
+M L + QPQKYNS+ E G+IY +AKDQHGCRFLQR SE
Sbjct: 259 -----------------TMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSE 301
Query: 475 GTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS 534
DIE IF EIID+I ELM DPFGNYLVQKLLEVCNEDQRMQI+ +ITRK G L++IS
Sbjct: 302 KDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKIS 361
Query: 535 -----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKF 589
TRAVQK++ET K E+ S+++S+LK GIV LIKN+NGNHV QRCL YLLP KF
Sbjct: 362 CDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKF 421
Query: 590 LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQF 649
LF+A +CVELATDRHGCCV+QKCL +SEGEQ+ LVS+I SNAL+LSQDPFGNYV+Q+
Sbjct: 422 LFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQY 481
Query: 650 VFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLD 709
VFEL+L WAT +IL+QLEGNY +LSMQK SSNVVEKCLK DD+ RA II+ELI+ LD
Sbjct: 482 VFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLD 541
Query: 710 QVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
QVMLDPYGNYVIQAAL+QSKG VH+ LVDAI+ ++ LRT+PYGKKVLS S KK
Sbjct: 542 QVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/320 (55%), Positives = 238/320 (74%), Gaps = 7/320 (2%)
Query: 450 EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLE 509
++ G +YLMAKDQHGCRFLQR EGT D IF E+I H+VELM DPFGNYL+QKLL+
Sbjct: 333 DIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLD 392
Query: 510 VCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGIVT 564
VC E+QR QI+ T + G L+RIS TR VQ+++ET++S +Q SLV +L+PG +
Sbjct: 393 VCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLD 452
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
LIK++NGNHV QRCL L E +KF+F A T C E+AT RHGCCV+QKC+ +S +QR
Sbjct: 453 LIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQRE 512
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+L+++I+ N+L+L+QDPFGNY VQFV ELR+P A +L QL+G+Y LSMQK+SS++VE
Sbjct: 513 KLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVE 572
Query: 685 KCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHV 744
+CL + E R I++EL+S H DQ++ DPY N+VIQAAL +KG +H++LV+ IRPH
Sbjct: 573 RCLMHC-PESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH- 630
Query: 745 PVLRTSPYGKKVLSCNSLKK 764
+LR +PY K++ S N LKK
Sbjct: 631 SILRNNPYCKRIFSRNLLKK 650
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 353 bits (905), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 171/321 (53%), Positives = 235/321 (73%), Gaps = 7/321 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
V E G +Y MAKDQHGCRFLQ +G+ D IF E+I H+VELM DPFGNYL+QKL
Sbjct: 196 VSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKL 255
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
L+VCNE+QR QI+ +T + G L+RIS TR VQ+++E++K+ +Q SLV S+L+PG
Sbjct: 256 LDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGF 315
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQ 622
+ LI+++NGNHV QRCL L E ++F+F+ T C+++AT RHGCCV+QKC+ +S G Q
Sbjct: 316 LNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQ 375
Query: 623 RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNV 682
R +LV++I+ N+L L+QDP+GNY VQFV ELR A +L QL+G+Y +LSMQK+SS++
Sbjct: 376 REKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHM 435
Query: 683 VEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRP 742
VE+CL + E R I++ELIS H D ++ DPY N+VIQAAL +KG +H+ LV+ IRP
Sbjct: 436 VERCLTHC-PESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRP 494
Query: 743 HVPVLRTSPYGKKVLSCNSLK 763
H +LR +PY K++ S N LK
Sbjct: 495 H-SILRNNPYCKRIFSRNLLK 514
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 325 bits (833), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 235/339 (69%), Gaps = 19/339 (5%)
Query: 431 DSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDH 490
DS+DL S+ + G +YLMAKDQ GCR LQ+ + EG D+ IF E+I++
Sbjct: 232 DSLDLA----------SMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINN 281
Query: 491 IVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETL 545
++EL TDPFGNYL+QKL+EVCNE+QR QIL +T K G LV+IS TR VQK+IET+
Sbjct: 282 VIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETV 341
Query: 546 KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDR 605
+ EQ SLV S+L PG ++L + +NGNHV CL + P +KF+ +A T C+E+AT R
Sbjct: 342 TTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTR 401
Query: 606 HGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQ 665
HGCCV+Q+C+++S GEQ +LV +I+ N+L+L+QDPFGNY+VQ++ E ++ +++L +
Sbjct: 402 HGCCVLQRCVSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKV--GGVNVLFE 459
Query: 666 LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAAL 725
L GNY L+ QK+ S+VVEKCL+Y E R+ I+ EL+S + ++ DPY NYVIQ AL
Sbjct: 460 LRGNYVKLATQKFGSHVVEKCLRY-YPESRSQIVNELVSVLNFGYLLQDPYANYVIQCAL 518
Query: 726 QQSKGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
++KG V ++LV+ +R + L+ +PY K++ S N KK
Sbjct: 519 SKTKGFVRASLVEKVRRY-ENLKMTPYCKRIFSKNLWKK 556
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/324 (47%), Positives = 221/324 (68%), Gaps = 11/324 (3%)
Query: 447 SVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQK 506
S+ E+ G + LMAKDQ GCR LQ+ + EGT + + I + IIDH+VEL DPFGNY+VQK
Sbjct: 246 SMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQK 305
Query: 507 LLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVSSLKPG 561
L +V +E+QR I+ +T +L+RI TR VQK+IET+K+ +Q +LV S LKPG
Sbjct: 306 LFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPG 365
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGE 621
+ L+K++NGNHV Q CL L P ++F+ +A T C E+A RHGCCV+Q C+++S G
Sbjct: 366 FLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGL 425
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
QR RLV++I+ N+L LSQDPFGNYVVQ++ + ++ + + +L Q +Y +L+ QK+SS+
Sbjct: 426 QRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQV--SAVKLLVQFRMHYAELATQKFSSH 483
Query: 682 VVEKCL-KYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
V+EKCL KY E RA I++EL+ + + ++ DPY NYVIQ AL +KG V + LV +
Sbjct: 484 VIEKCLRKY--PESRAEIVRELLCVPNFEYLLQDPYANYVIQTALSVTKGPVRAKLVAKV 541
Query: 741 RPHVPVLRTSPYGKKVLSCNSLKK 764
+ L +SPY KK+ S LKK
Sbjct: 542 YRYGK-LHSSPYCKKIFSKTILKK 564
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/329 (44%), Positives = 225/329 (68%), Gaps = 11/329 (3%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
P S+ E+ G + LMA+DQ GCR LQ+ + EGT+ D + IF+EIIDH+VEL DP GN
Sbjct: 205 PLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGN 264
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVS 556
Y+VQKLL V +E+QR I+ +T K +L++I TR +QK+I+T+K+ +Q +LV S
Sbjct: 265 YIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKS 324
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+L+PG + L+ + NG HV Q CL +L+P +KF+ +A T C +LAT ++GC V+Q L
Sbjct: 325 ALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLI 384
Query: 617 HSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQ 676
++ G Q RLV++I+ ++L LSQDPFGNYVVQ + + ++ +++++L + +L+ Q
Sbjct: 385 NTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLIDQQV--SSVNLLLPFRTHCIELATQ 442
Query: 677 KYSSNVVEKCL-KYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSA 735
K+SS+V+EKCL KY E RA I++EL+S + +Q++ DPY NYVIQ AL +KG V +
Sbjct: 443 KFSSHVIEKCLRKY--PESRAEIVRELLSYPNFEQLLQDPYANYVIQTALSVTKGAVRAR 500
Query: 736 LVDAIRPHVPVLRTSPYGKKVLSCNSLKK 764
LV+ ++ L+++PY KK+ S LKK
Sbjct: 501 LVEKVK-RFGKLQSNPYCKKIFSKTILKK 528
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 252 bits (644), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 187/309 (60%), Gaps = 8/309 (2%)
Query: 455 IYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNED 514
I KDQHGCR+LQR + + I+ +F E ++ LM D FGNYL QKL E +E
Sbjct: 348 ILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEA 407
Query: 515 QRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
QR +Q I K LV IS TRA+QK+I+ + SP+Q S +V++L+P +V L K++
Sbjct: 408 QRSTFIQIIAPK---LVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDL 464
Query: 570 NGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK 629
NGNHV Q+CL E +F+F A + ++++T RHGCCV+Q+C H+ Q +LV
Sbjct: 465 NGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEH 524
Query: 630 ITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKY 689
I +AL L QD FGNYV+Q+V EL P T I+ LS QK+SSNV+EKC+ +
Sbjct: 525 IVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFF 584
Query: 690 GDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRT 749
+ +I EL+ HL +++ D + NYVIQ AL + + LV+ I+P +P ++
Sbjct: 585 APAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKN 644
Query: 750 SPYGKKVLS 758
+P G+++LS
Sbjct: 645 TPCGRRILS 653
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 41/200 (20%)
Query: 596 NNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFE--- 652
+N + D+HGC +Q+ L + ++ +L D FGNY+ Q +FE
Sbjct: 346 SNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHAS 405
Query: 653 ----------------------------------LRLPWATMDILDQLEGNYGDLSMQKY 678
+ P I++ L N L+
Sbjct: 406 EAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLN 465
Query: 679 SSNVVEKCL-KYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALV 737
++V++KCL K+ ++ I + I LD V +G V+Q + LV
Sbjct: 466 GNHVIQKCLNKFSQED--CQFIFDAICEDPLD-VSTHRHGCCVVQRCFDHASPAQIEQLV 522
Query: 738 DAIRPHVPVLRTSPYGKKVL 757
+ I PH L +G VL
Sbjct: 523 EHIVPHALTLVQDAFGNYVL 542
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 223 bits (569), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 196/326 (60%), Gaps = 21/326 (6%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+++ G I+ + KDQHGCRFLQ+++ + + IF E D+ VELMTD FGNYL+QKL
Sbjct: 561 LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKL 620
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
LE +QR+ +L I+ + V IS TRA+QK+IE +K+ E+ +VV SL+P
Sbjct: 621 LEEVTTEQRI-VLTKIS--SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYT 677
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQ 622
V L K++NGNHV Q+CL L PE +F+F A +++C+++AT RHGCCV+Q+CL H EQ
Sbjct: 678 VQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQ 737
Query: 623 RHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD----ILDQLEGNYGDLSMQKY 678
L K+ + L+ DPFGNYVVQ++ D I+ L+ +LS+ K+
Sbjct: 738 CDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKF 797
Query: 679 SSNVVEKCLKYGDDERRAHIIQELISNA---HLDQVMLDPYGNYVIQAAL---QQSKGGV 732
SNV+EK LK +I E+++N + ++ D YGNYV+Q AL + +
Sbjct: 798 GSNVIEKILKTAIVSEP--MILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYL 855
Query: 733 HSALVDAIRP-HVPVLRTSPYGKKVL 757
+ L + + P V +R +P+GK+++
Sbjct: 856 YKRLSEIVAPLLVGPIRNTPHGKRII 881
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 183/308 (59%), Gaps = 2/308 (0%)
Query: 453 GRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCN 512
G + + KDQ+GCR+LQ+ + E + F EI +V+LM DPFGNY+ QKL +
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 513 EDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMN 570
+Q++ +L I D+ TR++Q +I+ L S EQ SL++ + P + TL + N
Sbjct: 525 REQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNN 584
Query: 571 GNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKI 630
G HV Q+C+ PE + LF + N + LAT+RHGCC++Q+CL + G+ + RLV+ I
Sbjct: 585 GTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSI 644
Query: 631 TSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYG 690
+ L+L Q+ +GNY+VQ V EL + T I+++ GN LS+QK+SSN +E+C++
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTA 704
Query: 691 DDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTS 750
R ++QE +S +++Q++ D Y NYV+Q L + ++ +I +P ++ +
Sbjct: 705 SPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQNT 764
Query: 751 PYGKKVLS 758
+G+ +L+
Sbjct: 765 RHGRHILA 772
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 5/160 (3%)
Query: 458 MAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRM 517
+A ++HGC LQR + + E++ II + L+ + +GNYLVQ +LE+ +
Sbjct: 615 LATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTE 674
Query: 518 QILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLK-PGIVTLIKNMNGNHV 574
+I++ L + S+ A+++ I T + ++ L P I L+ + N+V
Sbjct: 675 RIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYV 734
Query: 575 AQRCLLYLLPEYSKFLFQATTNNCV-ELATDRHGCCVIQK 613
QR L + E KFL + ++ + ++ RHG ++ K
Sbjct: 735 MQR-FLNVADESQKFLILRSISHVIPKIQNTRHGRHILAK 773
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 180/321 (56%), Gaps = 14/321 (4%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ GR+ + DQHG RF+Q+K+ + E+ +F E++ +LMTD FGNY++QK
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
+E QR ++++ + AG +V +S R +QK +E + +Q + ++ L +
Sbjct: 686 IEHGTPAQREELVKQL---AGQMVSLSLQMYGCRVIQKALEVIDV-DQKTELIRELDGNV 741
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH-SEGE 621
+ +++ NGNHV Q+C+ + F+ A L+T +GC VIQ+ L H S+ E
Sbjct: 742 LKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDE 801
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
+ H ++ +I +A L+ D +GNYV Q V E P I+++L GN +S KY+SN
Sbjct: 802 ETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASN 861
Query: 682 VVEKCLKYGDDERRAHIIQELISNA----HLDQVMLDPYGNYVIQAALQQSKGGVHSALV 737
VVEKCL++ D R +I+E++ + HL +M D + NYV+Q L+ SK LV
Sbjct: 862 VVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILV 921
Query: 738 DAIRPHVPVLRTSPYGKKVLS 758
++ H+ LR YGK +++
Sbjct: 922 QRMKIHLQSLRKYTYGKHIVA 942
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 2/174 (1%)
Query: 584 PEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFG 643
P K VE + D+HG IQ+ L H E++ + S++ A L D FG
Sbjct: 619 PNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFG 678
Query: 644 NYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELI 703
NYV+Q E P +++ QL G LS+Q Y V++K L+ D +++ +I+EL
Sbjct: 679 NYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELD 738
Query: 704 SNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
N + + + D GN+VIQ ++ G ++ A R V L T PYG +V+
Sbjct: 739 GN--VLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVI 790
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 112/222 (50%), Gaps = 14/222 (6%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ V+++ G++ ++ +GCR +Q+ + ++ ++ E+ ++++ + D GN+
Sbjct: 693 QREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNH 752
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
++QK +E R+ + A R G + +ST R +Q+++E E+ ++
Sbjct: 753 VIQKCIESMPAG-RIGFVIAAFR--GQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDE 809
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
+ L + GN+V Q L P+ + + + T N V+++ ++ V++KCL H
Sbjct: 810 ILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEH 869
Query: 618 SEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFEL 653
++ +R L+ +I + L + +D F NYVVQ V E+
Sbjct: 870 ADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEI 911
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 39/253 (15%)
Query: 542 IETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVEL 601
++ LKSP L +S + +V + +G+ Q+ L + E +F +L
Sbjct: 613 LDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKL 672
Query: 602 ATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD 661
TD G VIQK + H QR LV ++ + LS +G V+Q E+ +
Sbjct: 673 MTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTE 732
Query: 662 ILDQLEGN------------------------------------YGDLSMQKYSSNVVEK 685
++ +L+GN LS Y V+++
Sbjct: 733 LIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQR 792
Query: 686 CLKYGDDERRAH-IIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHV 744
L++ D+ H II E++ +A + D YGNYV Q L++ K +++ + +V
Sbjct: 793 ILEHCSDDEETHCIIDEILESAFA--LAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNV 850
Query: 745 PVLRTSPYGKKVL 757
+ Y V+
Sbjct: 851 VQMSQHKYASNVV 863
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 649 FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHL 708
F+ EL+ P A L + G + S+ ++ S +++ L++ DE +A + E++ A
Sbjct: 612 FLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQA-- 669
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
++M D +GNYVIQ ++ LV + + L YG +V+
Sbjct: 670 SKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVI 718
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 190 bits (482), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 176/322 (54%), Gaps = 14/322 (4%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQ-FSLVVSSLKPG 561
E + DQ++ + TR G ++ ++ R +QK +E++ S +Q S +V L
Sbjct: 784 FEFGSLDQKLAL---ATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGH 840
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGE 621
++ +K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H E
Sbjct: 841 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAE 900
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
Q ++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SN
Sbjct: 901 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASN 960
Query: 682 VVEKCLKYGDDERRAHIIQELI-----SNAHLDQVMLDPYGNYVIQAALQQSKGGVHSAL 736
VVEKC+ + RA +I E+ ++ L +M D Y NYV+Q + ++ +
Sbjct: 961 VVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKII 1020
Query: 737 VDAIRPHVPVLRTSPYGKKVLS 758
+ IRPH+ LR YGK +L+
Sbjct: 1021 MHKIRPHITTLRKYTYGKHILA 1042
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 47/194 (24%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ ++PQ ++ ++ G++++++ +GCR +QR + T E I E+ H +L
Sbjct: 858 IECVQPQSLQF-IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 916
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDL-------------VRISTRA---- 537
+ D +GNY++Q +LE + + +I+ I K L V ++RA
Sbjct: 917 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERAL 976
Query: 538 ----------------------------VQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
VQK+I+ + P Q +++ ++P I TL K
Sbjct: 977 LIDEVCCQNDGPHSALYTMMKDQYANYVVQKMID-MAEPAQRKIIMHKIRPHITTLRKYT 1035
Query: 570 NGNHVAQRCLLYLL 583
G H+ + Y L
Sbjct: 1036 YGKHILAKLEKYYL 1049
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 189 bits (480), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 176/322 (54%), Gaps = 14/322 (4%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++ G I ++DQHG RF+Q+K+ T + + +F EI+ +LMTD FGNY++QK
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF 783
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQ-FSLVVSSLKPG 561
E + DQ++ + TR G ++ ++ R +QK +E++ S +Q S +V L
Sbjct: 784 FEFGSLDQKLAL---ATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGH 840
Query: 562 IVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGE 621
++ +K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H E
Sbjct: 841 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAE 900
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
Q ++ ++ + L QD +GNYV+Q V E P I+ ++ G LS K++SN
Sbjct: 901 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASN 960
Query: 682 VVEKCLKYGDDERRAHIIQELI-----SNAHLDQVMLDPYGNYVIQAALQQSKGGVHSAL 736
VVEKC+ + RA +I E+ ++ L +M D Y NYV+Q + ++ +
Sbjct: 961 VVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKII 1020
Query: 737 VDAIRPHVPVLRTSPYGKKVLS 758
+ IRPH+ LR YGK +L+
Sbjct: 1021 MHKIRPHITTLRKYTYGKHILA 1042
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 47/194 (24%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ ++PQ ++ ++ G++++++ +GCR +QR + T E I E+ H +L
Sbjct: 858 IECVQPQSLQF-IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 916
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDL-------------VRISTRA---- 537
+ D +GNY++Q +LE + + +I+ I K L V ++RA
Sbjct: 917 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERAL 976
Query: 538 ----------------------------VQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
VQK+I+ + P Q +++ ++P I TL K
Sbjct: 977 LIDEVCCQNDGPHSALYTMMKDQYANYVVQKMID-MAEPAQRKIIMHKIRPHITTLRKYT 1035
Query: 570 NGNHVAQRCLLYLL 583
G H+ + Y L
Sbjct: 1036 YGKHILAKLEKYYL 1049
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 177/318 (55%), Gaps = 8/318 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + + DQ+G RF+Q+K+ T E+ IF EI+ + LMTD FGNY++QK
Sbjct: 662 LSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKF 721
Query: 508 LEVCNEDQRMQILQAITRK--AGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E QR ++ + +T A L R +QK +E ++ EQ + +V L ++
Sbjct: 722 FEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVE-LEQQARMVKELDGSVMKC 780
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+ + NGNHV Q+C+ L ++ +F+ + + L+T +GC VIQ+ L H + + R
Sbjct: 781 VHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQR 840
Query: 626 LV-SKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ +I + L+QD +GNYV+Q + + P +I+++L G +S QK++SNVVE
Sbjct: 841 IIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVE 900
Query: 685 KCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
KCL +G E R ++ E++ N L +M DP+GNYV+Q L+ + ++ I
Sbjct: 901 KCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRI 960
Query: 741 RPHVPVLRTSPYGKKVLS 758
+ H+ L+ YGK +++
Sbjct: 961 KVHLNALKRYTYGKHIVA 978
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 132/278 (47%), Gaps = 19/278 (6%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ E+VTG + ++ +GCR +Q+ + LE ++ E+ +++ + D GN+
Sbjct: 729 QRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNH 788
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
++QK +E +D I+ + G ++ +ST R +Q+V+E + E +++
Sbjct: 789 VIQKCIERLPQDWIQFIISSFY---GKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEE 845
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
+ + TL ++ GN+V Q + + P + V+++ + V++KCLT
Sbjct: 846 IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTF 905
Query: 618 SEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
E+R LV+++ + +DPFGNYVVQ V E + IL +++ +
Sbjct: 906 GGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLN 965
Query: 672 DLSMQKYSSNV---VEKCLKYGDDERRAHIIQELISNA 706
L Y ++ VEK + G ERR + L +N
Sbjct: 966 ALKRYTYGKHIVARVEKLITTG--ERRIGLSSSLAANT 1001
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 102/265 (38%), Gaps = 41/265 (15%)
Query: 531 VRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFL 590
V I + A ++E K+ + SL +S + ++ + G+ Q+ L E +
Sbjct: 638 VDIGSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAI 697
Query: 591 FQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILS------------ 638
F L TD G VIQK H +QR L ++T + L LS
Sbjct: 698 FPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKA 757
Query: 639 ------------------------QDPFGNYVVQFVFELRLP--WATMDILDQLEGNYGD 672
D GN+V+Q E RLP W I+ G
Sbjct: 758 LEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIE-RLPQDWIQF-IISSFYGKVLA 815
Query: 673 LSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGV 732
LS Y V+++ L++ DD II E I ++ + + D YGNYVIQ +Q K
Sbjct: 816 LSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDS-VCTLAQDQYGNYVIQHIIQHGKPHE 874
Query: 733 HSALVDAIRPHVPVLRTSPYGKKVL 757
S +++ + + + + V+
Sbjct: 875 RSEIINKLAGQIVKMSQQKFASNVV 899
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 172/319 (53%), Gaps = 8/319 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + S +Q + +V L ++
Sbjct: 907 FEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLK 966
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 967 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTL 1026
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 685 KCLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + ++ L +M D Y NYV+Q + ++ G ++
Sbjct: 1087 KCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHK 1146
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1147 IRPHIATLRKYTYGKHILA 1165
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 4/174 (2%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 842 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNY 901
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 902 VIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ--VINEMVRE 959
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 960 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 40/256 (15%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + + I+ ++ +G+ Q L + +F
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAY 891
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILS--------------------- 638
+L D G VIQK EQ+ L +I + L L+
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 951
Query: 639 -----------------QDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
+D GN+VVQ E P + I+D +G LS Y
Sbjct: 952 VINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCR 1011
Query: 682 VVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIR 741
V+++ L++ ++ I++EL + H +Q++ D YGNYVIQ L+ + S +V IR
Sbjct: 1012 VIQRILEHCLPDQTLPILEEL--HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 742 PHVPVLRTSPYGKKVL 757
+V VL + V+
Sbjct: 1070 GNVLVLSQHKFASNVV 1085
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 47/194 (24%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ ++PQ ++ ++ G+++ ++ +GCR +QR + + I E+ H +L
Sbjct: 981 IECVQPQSLQF-IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQL 1039
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAI--------------------------TRKAG 528
+ D +GNY++Q +LE + + +I+ I T +A
Sbjct: 1040 VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAV 1099
Query: 529 DLVRISTR-------------------AVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
+ + T VQK+I+ + P Q +V+ ++P I TL K
Sbjct: 1100 LIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID-VAEPGQRKIVMHKIRPHIATLRKYT 1158
Query: 570 NGNHVAQRCLLYLL 583
G H+ + Y +
Sbjct: 1159 YGKHILAKLEKYYM 1172
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 171/318 (53%), Gaps = 8/318 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 906 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 964
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 965 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 1024
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 1025 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1084
Query: 686 CLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + ++ L +M D Y NYV+Q + ++ G ++ I
Sbjct: 1085 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1144
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1145 RPHIATLRKYTYGKHILA 1162
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 122/259 (47%), Gaps = 16/259 (6%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK E + G + +A +GCR +Q+ + + ++ E+ H+++ + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 973 VVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEE 1028
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + N + L+ + V++KC+TH
Sbjct: 1029 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH 1088
Query: 618 SEGEQRHRLVSKIT-------SNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ S + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1089 ASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHI 1148
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1149 ATLRKYTYGKHILAKLEKY 1167
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 841 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 900
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 901 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 958
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 959 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 102/252 (40%), Gaps = 34/252 (13%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + + I+ ++ +G+ Q L P + +F
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+L D G VIQK EQ+ L +I + L L+ +G V+Q E
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKC--------LKYGDDERRAH------------II 699
+++ +L+G+ + ++VV+KC L++ D + +I
Sbjct: 951 NEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010
Query: 700 QELISNA--------------HLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVP 745
Q ++ + H +Q++ D YGNYVIQ L+ + S +V IR +V
Sbjct: 1011 QRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1070
Query: 746 VLRTSPYGKKVL 757
VL + V+
Sbjct: 1071 VLSQHKFASNVV 1082
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 47/194 (24%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ ++PQ ++ ++ G+++ ++ +GCR +QR + + I E+ H +L
Sbjct: 978 IECVQPQSLQF-IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQL 1036
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAI--------------------------TRKAG 528
+ D +GNY++Q +LE + + +I+ I T +A
Sbjct: 1037 VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAV 1096
Query: 529 DLVRISTR-------------------AVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
+ + T VQK+I+ + P Q +V+ ++P I TL K
Sbjct: 1097 LIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID-VAEPGQRKIVMHKIRPHIATLRKYT 1155
Query: 570 NGNHVAQRCLLYLL 583
G H+ + Y +
Sbjct: 1156 YGKHILAKLEKYYM 1169
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 171/318 (53%), Gaps = 8/318 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E + +Q++ + + I L R +QK +E + S +Q +V L ++
Sbjct: 906 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHVLKC 964
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H +Q
Sbjct: 965 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLP 1024
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEK 685
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVEK
Sbjct: 1025 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1084
Query: 686 CLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
C+ + RA +I E+ + ++ L +M D Y NYV+Q + ++ G ++ I
Sbjct: 1085 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1144
Query: 741 RPHVPVLRTSPYGKKVLS 758
RPH+ LR YGK +L+
Sbjct: 1145 RPHIATLRKYTYGKHILA 1162
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 122/259 (47%), Gaps = 16/259 (6%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK E + G + +A +GCR +Q+ + + ++ E+ H+++ + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
+VQK +E C + Q +Q + I G + +ST R +Q+++E P+Q ++
Sbjct: 973 VVQKCIE-CVQPQSLQFI--IDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEE 1028
Query: 558 LKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTH 617
L L+++ GN+V Q L + PE + N + L+ + V++KC+TH
Sbjct: 1029 LHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH 1088
Query: 618 SEGEQRHRLVSKIT-------SNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
+ +R L+ ++ S + +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1089 ASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHI 1148
Query: 671 GDLSMQKYSSNVVEKCLKY 689
L Y +++ K KY
Sbjct: 1149 ATLRKYTYGKHILAKLEKY 1167
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 841 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 900
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +++EL +
Sbjct: 901 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL--D 958
Query: 706 AHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 959 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 102/252 (40%), Gaps = 34/252 (13%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + + I+ ++ +G+ Q L P + +F
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
+L D G VIQK EQ+ L +I + L L+ +G V+Q E
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKC--------LKYGDDERRAH------------II 699
+++ +L+G+ + ++VV+KC L++ D + +I
Sbjct: 951 NEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1010
Query: 700 QELISNA--------------HLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVP 745
Q ++ + H +Q++ D YGNYVIQ L+ + S +V IR +V
Sbjct: 1011 QRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1070
Query: 746 VLRTSPYGKKVL 757
VL + V+
Sbjct: 1071 VLSQHKFASNVV 1082
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 47/194 (24%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ ++PQ ++ ++ G+++ ++ +GCR +QR + + I E+ H +L
Sbjct: 978 IECVQPQSLQF-IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQL 1036
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAI--------------------------TRKAG 528
+ D +GNY++Q +LE + + +I+ I T +A
Sbjct: 1037 VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAV 1096
Query: 529 DLVRISTR-------------------AVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
+ + T VQK+I+ + P Q +V+ ++P I TL K
Sbjct: 1097 LIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID-VAEPGQRKIVMHKIRPHIATLRKYT 1155
Query: 570 NGNHVAQRCLLYLL 583
G H+ + Y +
Sbjct: 1156 YGKHILAKLEKYYM 1169
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 170/319 (53%), Gaps = 8/319 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G I ++DQHG RF+Q K+ T + + +F EI+ +LM D FGNY++QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 508 LEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ-FSLVVSSLKPGIVT 564
E + +Q++ + + I L R +QK +E + +Q + +V L ++
Sbjct: 907 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLK 966
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRH 624
+K+ NGNHV Q+C+ + P+ +F+ A L+T +GC VIQ+ L H EQ
Sbjct: 967 CVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTL 1026
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ ++ + L QD +GNYV+Q V E P I+ ++ GN LS K++SNVVE
Sbjct: 1027 PILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Query: 685 KCLKYGDDERRAHIIQELIS-----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDA 739
KC+ + RA +I E+ + ++ L +M D Y NYV+Q + ++ ++
Sbjct: 1087 KCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHK 1146
Query: 740 IRPHVPVLRTSPYGKKVLS 758
IRPH+ LR YGK +L+
Sbjct: 1147 IRPHIATLRKYTYGKHILA 1165
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 4/174 (2%)
Query: 586 YSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNY 645
Y + + +E + D+HG IQ L + +R + ++I A L D FGNY
Sbjct: 842 YPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNY 901
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS- 704
V+Q FE + + +++ G+ L++Q Y V++K L++ +++ +I E++
Sbjct: 902 VIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQ--VINEMVRE 959
Query: 705 -NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ H+ + + D GN+V+Q ++ + ++DA + V L T PYG +V+
Sbjct: 960 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVI 1013
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 40/256 (15%)
Query: 540 KVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCV 599
+++E ++ +L + + I+ ++ +G+ Q L P + +F
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 891
Query: 600 ELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILS--------------------- 638
+L D G VIQK EQ+ L +I + L L+
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQ 951
Query: 639 -----------------QDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
+D GN+VVQ E P + I+D +G LS Y
Sbjct: 952 VINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCR 1011
Query: 682 VVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIR 741
V+++ L++ E+ I++EL + H +Q++ D YGNYVIQ L+ + S +V IR
Sbjct: 1012 VIQRILEHCLPEQTLPILEEL--HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 742 PHVPVLRTSPYGKKVL 757
+V VL + V+
Sbjct: 1070 GNVLVLSQHKFASNVV 1085
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 47/194 (24%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVEL 494
++ ++PQ ++ ++ G+++ ++ +GCR +QR + E I E+ H +L
Sbjct: 981 IECVQPQSLQF-IIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQL 1039
Query: 495 MTDPFGNYLVQKLLEVCNEDQRMQILQAI--------------------------TRKAG 528
+ D +GNY++Q +LE + + +I+ I T +A
Sbjct: 1040 VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAM 1099
Query: 529 DLVRISTR-------------------AVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
+ + T VQK+I+ + P Q +V+ ++P I TL K
Sbjct: 1100 LIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID-VAEPAQRKIVMHKIRPHIATLRKYT 1158
Query: 570 NGNHVAQRCLLYLL 583
G H+ + Y +
Sbjct: 1159 YGKHILAKLEKYYM 1172
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 170/318 (53%), Gaps = 8/318 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + + DQ+G RF+Q+K+ T ++ ++ EI+ H + LMTD FGNY++QK
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKF 691
Query: 508 LEVCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E QR ++ + L R +QK IE + ++ +V L ++
Sbjct: 692 FEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHVMRC 750
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHS-EGEQRH 624
+++ NGNHV Q+C+ + E +F+ N V L+T +GC VIQ+ L H + + +
Sbjct: 751 VRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQS 810
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+++ +I S +L+QD +GNYV+Q V E P I+ +L G +S QK++SNVVE
Sbjct: 811 KVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 870
Query: 685 KCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
KCL +G E R ++ E++ N L +M D + NYV+Q L+ ++ I
Sbjct: 871 KCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRI 930
Query: 741 RPHVPVLRTSPYGKKVLS 758
+ H+ L+ YGK +++
Sbjct: 931 KVHLNALKKYTYGKHIVA 948
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 128/272 (47%), Gaps = 14/272 (5%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
PQ+ +++ + ++ +GCR +Q+ I L+ K+ E+ H++ + D GN
Sbjct: 698 PQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGN 757
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C ++ ++ + I+ G++V +ST R +Q+V+E P+ S V+
Sbjct: 758 HVVQKCIE-CVPEENIEFI--ISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMD 814
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ I L ++ GN+V Q L + P+ + + V+++ + V++KCLT
Sbjct: 815 EIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLT 874
Query: 617 HSEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
E+R LV+++ + +D F NYVVQ V E IL +++ +
Sbjct: 875 FGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHL 934
Query: 671 GDLSMQKYSSNVVEKCLKYGDDERRAHIIQEL 702
L Y ++V + K R +Q L
Sbjct: 935 NALKKYTYGKHIVARVEKLVAAGERRMALQSL 966
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Query: 541 VIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVE 600
++E KS + ++ + +V + G+ Q+ L + +++ + +
Sbjct: 618 MLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALA 677
Query: 601 LATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATM 660
L TD G VIQK H QR L K+ N L LS +G V+Q E+ +
Sbjct: 678 LMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 737
Query: 661 DILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYV 720
++ +L+G+ + ++VV+KC++ +E II N + + PYG V
Sbjct: 738 KMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGN--VVTLSTHPYGCRV 795
Query: 721 IQAALQQSKG-GVHSALVDAIRPHVPVLRTSPYGKKVL 757
IQ L+ S ++D I + +L YG V+
Sbjct: 796 IQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVI 833
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 167/321 (52%), Gaps = 14/321 (4%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ ++TG I + DQHG RF+Q+K+ E+ +F EI+ H +LMTD FGNY++QK
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 508 LEVCNEDQRMQILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGI 562
E N QR ++ + G +V +S R +QK ++ ++ P+Q + L +
Sbjct: 590 FEYGNSTQRKELADQLM---GQIVPLSLQMYGCRVIQKALDVIE-PDQRVRLARELDGQV 645
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQ 622
+ +++ NGNHV Q+C+ + + F+ A L+ +GC VIQ+ L +
Sbjct: 646 MRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDH 705
Query: 623 RHRLVS-KITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSN 681
+ R ++ +I + +LS+D +GNYV Q V E I +L G+ LS+ K++SN
Sbjct: 706 QCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASN 765
Query: 682 VVEKCLKYGDDERRAHIIQELI----SNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALV 737
V+EKCL+YG R II+E+ S L +M D YGNYV+Q + L
Sbjct: 766 VIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLF 825
Query: 738 DAIRPHVPVLRTSPYGKKVLS 758
+R H L+ YGK ++S
Sbjct: 826 SRVRMHASALKKYTYGKHIVS 846
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 2/170 (1%)
Query: 588 KFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVV 647
+F T + VE + D+HG IQ+ L + + E++ + +I +A L D FGNYV+
Sbjct: 527 RFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVI 586
Query: 648 QFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAH 707
Q FE ++ DQL G LS+Q Y V++K L + ++R + +EL +
Sbjct: 587 QKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLAREL--DGQ 644
Query: 708 LDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + + D GN+VIQ ++ ++ A R V L PYG +V+
Sbjct: 645 VMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVI 694
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 115/251 (45%), Gaps = 8/251 (3%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
Q+ +++ G+I ++ +GCR +Q+ + + ++ E+ ++ + D GN+
Sbjct: 597 QRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNH 656
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKP 560
++QK +E D+ +L A + L R +Q+++E Q + +
Sbjct: 657 VIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILE 716
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG 620
+ L K+ GN+V Q L E + + + + + V+L+ + VI+KCL +
Sbjct: 717 SVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGR 776
Query: 621 EQRHRLVSKIT------SNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLS 674
+R ++ +I ++ L++ +D +GNYVVQ +FE + + ++ + L
Sbjct: 777 VERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALK 836
Query: 675 MQKYSSNVVEK 685
Y ++V +
Sbjct: 837 KYTYGKHIVSR 847
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 2/186 (1%)
Query: 542 IETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVEL 601
+E LKS + +S + IV + +G+ Q+ L PE +F+ + +L
Sbjct: 517 LEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKL 576
Query: 602 ATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMD 661
TD G VIQK + QR L ++ + LS +G V+Q ++ P +
Sbjct: 577 MTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVR 636
Query: 662 ILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVI 721
+ +L+G + ++V++KC++ ++ ++ + + + PYG VI
Sbjct: 637 LARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAF--RGQVSSLSMHPYGCRVI 694
Query: 722 QAALQQ 727
Q L++
Sbjct: 695 QRLLER 700
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 171/322 (53%), Gaps = 11/322 (3%)
Query: 443 QKYNSVE--EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFG 500
Q+Y +++ ++ I ++DQHG RF+Q+K+ T + + +F EI+ LMTD FG
Sbjct: 1102 QRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFG 1161
Query: 501 NYLVQKLLEVCNEDQR----MQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVS 556
NY++QK E +Q+ MQ+ + + A L R +QK +E++ SPEQ +V
Sbjct: 1162 NYVIQKFFEFGTPEQKNTLGMQVKGHVLQLA--LQMYGCRVIQKALESI-SPEQQQEIVH 1218
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
L ++ +K+ NGNHV Q+C+ + P +F+ A L+T +GC VIQ+ L
Sbjct: 1219 ELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILE 1278
Query: 617 HSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQ 676
H EQ ++ ++ + L QD +GNYV+Q V E +++ + G LS
Sbjct: 1279 HCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQH 1338
Query: 677 KYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQVMLDPYGNYVIQAALQQSKGGVHS 734
K++SNVVEKC+ + R +I E+ + + L +M D Y NYV+Q + S+
Sbjct: 1339 KFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLK 1398
Query: 735 ALVDAIRPHVPVLRTSPYGKKV 756
L+ IRPH+ LR YGK +
Sbjct: 1399 KLMTKIRPHMAALRKYTYGKHI 1420
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 3/224 (1%)
Query: 534 STRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQA 593
+R +Q+ +E + E+ +V S + +L+ ++ GN+V Q+ + PE L
Sbjct: 1125 GSRFIQQKLERATAAEK-QMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQ 1183
Query: 594 TTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFEL 653
+ ++LA +GC VIQK L EQ+ +V ++ + L +D GN+VVQ E
Sbjct: 1184 VKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIEC 1243
Query: 654 RLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVML 713
P A I++ +G LS Y V+++ L++ E+ I+ EL + H +Q++
Sbjct: 1244 VDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDEL--HEHTEQLIQ 1301
Query: 714 DPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
D YGNYVIQ L+ K S L++++R V VL + V+
Sbjct: 1302 DQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVV 1345
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 130/258 (50%), Gaps = 14/258 (5%)
Query: 442 PQKYNSVE-EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFG 500
P++ N++ +V G + +A +GCR +Q+ + + E ++I E+ H+++ + D G
Sbjct: 1174 PEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNG 1233
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVV 555
N++VQK +E C + +Q + I G + +ST R +Q+++E + EQ + ++
Sbjct: 1234 NHVVQKCIE-CVDPVALQFI--INAFKGQVYSLSTHPYGCRVIQRILEHCTA-EQTTPIL 1289
Query: 556 SSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCL 615
L LI++ GN+V Q L + E L + + L+ + V++KC+
Sbjct: 1290 DELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCV 1349
Query: 616 THSEGEQRHRLVSKITS---NAL-ILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
TH+ +R L+ ++ + NAL ++ +D + NYVVQ + ++ P ++ ++ +
Sbjct: 1350 THATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMA 1409
Query: 672 DLSMQKYSSNVVEKCLKY 689
L Y ++ K KY
Sbjct: 1410 ALRKYTYGKHINAKLEKY 1427
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 43/178 (24%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ G++Y ++ +GCR +QR + T E I E+ +H +L+ D +GNY++Q +
Sbjct: 1253 INAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHV 1312
Query: 508 LEVCNEDQRMQILQAITRKAGDL-------------VRISTRA----------------- 537
LE ++ + ++ ++ K L V +TR
Sbjct: 1313 LEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNAL 1372
Query: 538 ------------VQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLL 583
VQK+I+ + P Q +++ ++P + L K G H+ + Y +
Sbjct: 1373 HVMMKDQYANYVVQKMID-VSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEKYYM 1429
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 170/318 (53%), Gaps = 8/318 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + + DQ+G RF+Q+K+ T ++ ++ EI+ + LMTD FGNY++QK
Sbjct: 628 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKF 687
Query: 508 LEVCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E QR ++ + + L R +QK IE + ++ +V L ++
Sbjct: 688 FEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHVMRC 746
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHS-EGEQRH 624
+++ NGNHV Q+C+ + E +F+ + V L+T +GC VIQ+ L H + + +
Sbjct: 747 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQS 806
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+++ +I S +L+QD +GNYVVQ V E P I+ +L G +S QK++SNVVE
Sbjct: 807 KVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 866
Query: 685 KCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
KCL +G E R ++ E++ N L +M D + NYV+Q L+ ++ I
Sbjct: 867 KCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRI 926
Query: 741 RPHVPVLRTSPYGKKVLS 758
+ H+ L+ YGK V++
Sbjct: 927 KVHLTALKKYTYGKHVVA 944
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 14/272 (5%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
PQ+ E++ + ++ +GCR +Q+ I L+ K+ E+ H++ + D GN
Sbjct: 694 PQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGN 753
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C ++ ++ + I+ G +V +ST R +Q+V+E P+ S V+
Sbjct: 754 HVVQKCIE-CVPEENIEFI--ISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVME 810
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ + L ++ GN+V Q L + P+ + + V+++ + V++KCLT
Sbjct: 811 EILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLT 870
Query: 617 HSEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
E+R LV+++ + +D F NYVVQ V E IL +++ +
Sbjct: 871 FGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHL 930
Query: 671 GDLSMQKYSSNVVEKCLKYGDDERRAHIIQEL 702
L Y +VV + K R +Q L
Sbjct: 931 TALKKYTYGKHVVARIEKLVAAGERRMALQSL 962
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 2/169 (1%)
Query: 589 FLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQ 648
F + VE ++D++G IQ+ L + ++++ + +I AL+L D FGNYV+Q
Sbjct: 626 FELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQ 685
Query: 649 FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHL 708
FE LP ++ ++L + LS+Q Y V++K ++ D +++ +++EL + H+
Sbjct: 686 KFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKEL--DGHV 743
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + D GN+V+Q ++ ++ HV L T PYG +V+
Sbjct: 744 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVI 792
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 3/218 (1%)
Query: 541 VIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVE 600
++E KS + +S + +V + G+ Q+ L + +++ +
Sbjct: 614 MLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALV 673
Query: 601 LATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATM 660
L TD G VIQK H QR L K+ + L LS +G V+Q E+ +
Sbjct: 674 LMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKI 733
Query: 661 DILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYV 720
++ +L+G+ + ++VV+KC++ +E II H+ + PYG V
Sbjct: 734 KMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFF--GHVVTLSTHPYGCRV 791
Query: 721 IQAALQQSKG-GVHSALVDAIRPHVPVLRTSPYGKKVL 757
IQ L+ S +++ I V +L YG V+
Sbjct: 792 IQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVV 829
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 169/318 (53%), Gaps = 8/318 (2%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
+ E+ G + + DQ+G RF+Q+K+ T ++ ++ EI+ + LMTD FGNY++QK
Sbjct: 624 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKF 683
Query: 508 LEVCNEDQRMQILQAITRKAG--DLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E QR ++ + + L R +QK IE + ++ +V L ++
Sbjct: 684 FEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMV-KELDGHVMRC 742
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG-EQRH 624
+++ NGNHV Q+C+ + E +F+ + V L+T +GC VIQ+ L H + +
Sbjct: 743 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQS 802
Query: 625 RLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
+++ +I S +L+QD +GNYVVQ V E P I+ +L G +S QK++SNVVE
Sbjct: 803 KVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 862
Query: 685 KCLKYGDDERRAHIIQELIS----NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
KCL +G E R ++ E++ N L +M D + NYV+Q L+ ++ I
Sbjct: 863 KCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRI 922
Query: 741 RPHVPVLRTSPYGKKVLS 758
+ H+ L+ YGK +++
Sbjct: 923 KVHLNALKKYTYGKHIVA 940
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 128/272 (47%), Gaps = 14/272 (5%)
Query: 442 PQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGN 501
PQ+ E++ + ++ +GCR +Q+ I L+ ++ E+ H++ + D GN
Sbjct: 690 PQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGN 749
Query: 502 YLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVS 556
++VQK +E C ++ ++ + I+ G +V +ST R +Q+V+E +P+ S V+
Sbjct: 750 HVVQKCIE-CVPEENIEFI--ISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVME 806
Query: 557 SLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLT 616
+ + L ++ GN+V Q L + P+ + + V+++ + V++KCLT
Sbjct: 807 EILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLT 866
Query: 617 HSEGEQRHRLVSKITSNA------LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
E+R LV+++ + +D F NYVVQ V E IL +++ +
Sbjct: 867 FGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHL 926
Query: 671 GDLSMQKYSSNVVEKCLKYGDDERRAHIIQEL 702
L Y ++V + K R +Q L
Sbjct: 927 NALKKYTYGKHIVARVEKLVAAGERRMALQSL 958
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 589 FLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQ 648
F + VE ++D++G IQ+ L + ++++ + +I AL L D FGNYV+Q
Sbjct: 622 FELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQ 681
Query: 649 FVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHL 708
FE LP ++ ++L N LS+Q Y V++K ++ D +++ +++EL + H+
Sbjct: 682 KFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKEL--DGHV 739
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ + D GN+V+Q ++ ++ HV L T PYG +V+
Sbjct: 740 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVI 788
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 3/218 (1%)
Query: 541 VIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVE 600
++E KS + +S + +V + G+ Q+ L + +++ +
Sbjct: 610 MLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALA 669
Query: 601 LATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATM 660
L TD G VIQK H QR L K+ N L LS +G V+Q E+ +
Sbjct: 670 LMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 729
Query: 661 DILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYV 720
++ +L+G+ + ++VV+KC++ +E II H+ + PYG V
Sbjct: 730 QMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFF--GHVVTLSTHPYGCRV 787
Query: 721 IQAALQQSKG-GVHSALVDAIRPHVPVLRTSPYGKKVL 757
IQ L+ S +++ I V +L YG V+
Sbjct: 788 IQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVV 825
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 171/331 (51%), Gaps = 10/331 (3%)
Query: 435 LKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIID-HIVE 493
L + Q++ + ++ G + L + DQHG RF+Q+K++ T E+ E +F EI ++
Sbjct: 381 LYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQ 440
Query: 494 LMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQF 551
LM D FGNY+VQK E NE Q+ +L I L R VQK IE + SPE
Sbjct: 441 LMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYI-SPEHQ 499
Query: 552 SLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVI 611
++ L ++ + + NGNHV Q+ + + + +F+ +A L+ +GC VI
Sbjct: 500 VQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVI 559
Query: 612 QKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
Q+ + H E R ++ ++ + L L+QD +GNYVVQ + I D + +
Sbjct: 560 QRAIEHCHSE-RKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLL 618
Query: 672 DLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS----NAHLDQVML-DPYGNYVIQAALQ 726
LS K++SNVVE+C+ Y D R I+ ++IS N + +M+ D Y NYVIQ L
Sbjct: 619 FLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLD 678
Query: 727 QSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
S L+ I PH+ VL+ YGK ++
Sbjct: 679 ASPEEERDLLISYIYPHISVLKKFTYGKHLI 709
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 12/218 (5%)
Query: 556 SSLKPGIVTLIKNMNGNHVAQRC-LLYLLPEYSKFLFQATT--NNCVELATDRHGCCVIQ 612
S+ P +LI N NG Q+ +LYL + F+ + N V +TD+HG IQ
Sbjct: 357 SAATPANPSLI-NQNGQEFLQQSRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQ 415
Query: 613 KCLTHSEGEQRHRLVSKITSNA-LILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYG 671
+ L + E+R + +I S + L L D FGNYVVQ FE +L Q++G+
Sbjct: 416 QKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVF 475
Query: 672 DLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGG 731
LS+Q Y VV+K ++Y E + +IQEL + H+ + D GN+VIQ A++ G
Sbjct: 476 SLSLQMYGCRVVQKAIEYISPEHQVQLIQEL--DGHVLDCVCDQNGNHVIQKAIECIDTG 533
Query: 732 VHSALVDAIRPHVPVLRTSPYGKKVLS-----CNSLKK 764
++ A+RP + VL PYG +V+ C+S +K
Sbjct: 534 HLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERK 571
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK + ++ G ++ ++ +GCR +Q+ I + E ++ E+ H+++ + D GN+
Sbjct: 462 QKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNH 521
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKP 560
++QK +E + IL+A+ + L R +Q+ IE S + L++ L P
Sbjct: 522 VIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERK--LIIEELLP 579
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLF------------QATTNNCVE-------- 600
I+ L ++ GN+V Q L K++F +N VE
Sbjct: 580 HILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISD 639
Query: 601 -----------------------LATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALIL 637
+ D++ VIQK L S E+R L+S I + +L
Sbjct: 640 VDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVL 699
Query: 638 SQDPFGNYVVQFVFELR 654
+ +G +++ V R
Sbjct: 700 KKFTYGKHLIMSVERFR 716
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 12/192 (6%)
Query: 392 NHINQSG-KLLSNGHLCLSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEE 450
NH+ Q + + GHL L QI L++ P + I ++ +EE
Sbjct: 520 NHVIQKAIECIDTGHLQFILRALRP---QIHVLSAHPYGCRVIQRAIEHCHSERKLIIEE 576
Query: 451 VTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEV 510
+ I + +DQ+G +Q + G+ D + IF +IDH++ L F + +V++ +
Sbjct: 577 LLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISY 636
Query: 511 CNEDQRMQILQAITRKAGD-----LVRISTRAVQKVIETL--KSP-EQFSLVVSSLKPGI 562
++ R +IL I + + ++ + + VI+ L SP E+ L++S + P I
Sbjct: 637 ISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHI 696
Query: 563 VTLIKNMNGNHV 574
L K G H+
Sbjct: 697 SVLKKFTYGKHL 708
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 177/328 (53%), Gaps = 15/328 (4%)
Query: 441 QPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFG 500
Q Q +S+E G + +A D+ + L++ I GT E I+ IF +I I ELM DPFG
Sbjct: 199 QDQAASSMENGRGSYFSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFG 258
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGDLVR-----ISTRAVQKVIETL--KSPEQFSL 553
N +V+ L+ C+ +Q + I+ +TR V I T A+Q ++ ++ ++ Q
Sbjct: 259 NDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPR 318
Query: 554 VVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQK 613
++ ++ + L +N N +V C + L + + +C ++A D++GCC++Q+
Sbjct: 319 IMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQ 378
Query: 614 CLTHSE---GEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNY 670
C E R RL+S++ +AL L + GNYVVQ+V EL T ++++L NY
Sbjct: 379 CFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNY 438
Query: 671 GDLSMQKYSSNVVEKCLKY-GDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSK 729
L+ KY S+VV+K LK G D + I+ +L+ +D ++LDP+GNYVIQ A SK
Sbjct: 439 AHLARNKYGSHVVQKLLKLRGIDSKL--IVVDLLRG--IDTLLLDPFGNYVIQTAWFVSK 494
Query: 730 GGVHSALVDAIRPHVPVLRTSPYGKKVL 757
V L I ++ ++R + +G K+L
Sbjct: 495 EDVRQMLRYYIERNIRLMRCNKFGNKIL 522
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 166/310 (53%), Gaps = 14/310 (4%)
Query: 458 MAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRM 517
AKD+ L I +GT E ++ I+ +I I ELM DP+G+ +VQ L+ C+ +Q +
Sbjct: 208 FAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIV 267
Query: 518 QILQAITRKAGDLVRI-----STRAVQKVIETL--KSPEQFSLVVSSLKPGIVTLIKNMN 570
Q++ +T++ V I T A+Q ++ + ++ +Q +V ++ + L K+ +
Sbjct: 268 QLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNH 327
Query: 571 GNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG---EQRHRLV 627
V C L P + + L + NC ++A D+HGCC++Q C E R RL+
Sbjct: 328 AIFVILACF-RLFPLHCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLI 386
Query: 628 SKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCL 687
+ +NAL L + +GNYVVQ++ EL + ++ QL GNY L+ KY S+ V+K L
Sbjct: 387 MEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLL 446
Query: 688 KYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPHVPVL 747
K + R +I L +D ++LDP+GNYVIQ A SK V L I ++P++
Sbjct: 447 KLRWIDSRVIVIDLL---REIDTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERNIPMM 503
Query: 748 RTSPYGKKVL 757
R + +G KVL
Sbjct: 504 RCNKFGNKVL 513
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 7/171 (4%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIE---KIFVEIIDHIVELMTDPFGNYLV 504
+E + + +A DQHGC LQ ++ + ++E ++ +E I + + L + +GNY+V
Sbjct: 347 LELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVV 406
Query: 505 QKLLEVCNEDQRMQILQAITRKAGDLVR--ISTRAVQKVIETLKSPEQFSLVVSSLKPGI 562
Q ++E+ N +++ + L R + AVQK+++ L+ + +V+ L+ I
Sbjct: 407 QYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLK-LRWIDSRVIVIDLLRE-I 464
Query: 563 VTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQK 613
TL+ + GN+V Q + + L N + ++ G V++K
Sbjct: 465 DTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERNIPMMRCNKFGNKVLEK 515
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 158/281 (56%), Gaps = 18/281 (6%)
Query: 459 AKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQ 518
AKD LQ I++G E I+KIF +I H+ ELM D +G+ + +KL+E C ++Q +
Sbjct: 159 AKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITR 218
Query: 519 ILQAITRKAGDLVRIS-----TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNH 573
+L + + + VR+ T A+Q ++ +L S EQ S + +L + L K++ +
Sbjct: 219 VLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHR 278
Query: 574 VAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSN 633
V C P ++++L + NC ++A D++GCC+++K + S E R L+ +I S
Sbjct: 279 VILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISI 338
Query: 634 ALILSQDPFG----------NYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVV 683
A+ L + +G NYVVQ++ L+ T + L+GNY LS KY S+VV
Sbjct: 339 AVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVV 398
Query: 684 EKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAA 724
+KCL+ + R II EL+S+ +D +++DPYG+YVIQ A
Sbjct: 399 QKCLESREFSSR-RIIAELLSD--IDSLLVDPYGDYVIQTA 436
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 165/322 (51%), Gaps = 20/322 (6%)
Query: 448 VEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKL 507
++++ G KDQHG RF+QR+++ + E IF EI D +EL D FGNY++QK
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 508 LEVCNEDQRMQILQAI--TRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTL 565
E ++ Q+ ++ K L + R +QK +E + S ++ LV+ L ++ +
Sbjct: 596 FEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLE-LSDSVLQM 654
Query: 566 IKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
IK+ NGNHV Q+ + + E F+ + T + L+T +GC VIQ+ L E +
Sbjct: 655 IKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQES 714
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFE------LRLPWATMDILDQLEGNYGDLSMQKYS 679
+++++ L QD +GNYV+Q+V + + +I++ + N + S K++
Sbjct: 715 ILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFA 774
Query: 680 SNVVEKCLKYGDDERRAHIIQELIS-------NAHLDQVML----DPYGNYVIQAALQQS 728
SNVVEK + YG ++ II +++ N D M+ D + NYVIQ + S
Sbjct: 775 SNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVS 834
Query: 729 KGGVHSALVDAIRPHVPVLRTS 750
+G +V AIR ++ L S
Sbjct: 835 EGEGKKLIVIAIRAYLDKLNKS 856
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 598 CVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPW 657
+E D+HG IQ+ L S ++ + ++I +A+ LS D FGNYV+Q FE
Sbjct: 543 SLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKI 602
Query: 658 ATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYG 717
++DQ +GN LS+Q Y+ V++K L+Y D +R ++ EL S++ L Q++ D G
Sbjct: 603 QKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLEL-SDSVL-QMIKDQNG 660
Query: 718 NYVIQAALQQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
N+VIQ A++ ++ ++ H+ L T YG +V+
Sbjct: 661 NHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVI 700
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 443 QKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
QK V++ G + ++ + CR +Q+ + ++ +E+ D +++++ D GN+
Sbjct: 603 QKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNH 662
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSS 557
++QK +E ++ IL ++T G + +ST R +Q+++E S +Q S +++
Sbjct: 663 VIQKAIETIPIEKLPFILSSLT---GHIYHLSTHSYGCRVIQRLLEFGSSEDQES-ILNE 718
Query: 558 LKPGIVTLIKNMNGNHVAQRCLL------YLLPEYSKFLFQATTNNCVELATDRHGCCVI 611
LK I LI++ GN+V Q L + + + + + NN VE + + V+
Sbjct: 719 LKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVV 778
Query: 612 QKCLTHSEGEQRHRLVSKI-------------TSNALILSQDPFGNYVVQ 648
+K + + Q+ ++SKI S +++ +D F NYV+Q
Sbjct: 779 EKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQ 828
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 41/309 (13%)
Query: 458 MAKDQHGCRFLQRKISEGTLEDIEK--IFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQ 515
+A DQ GCRFLQ+K+ + ++ + ++ +I ++L+ DPFGNYLVQKL + +Q
Sbjct: 218 LATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQ 277
Query: 516 RMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFSLVVSSLK------PGIVTLIK 567
+ ++Q I + + TR++QK+I+T+ + Q L++ +VTLI
Sbjct: 278 KTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTLIN 337
Query: 568 NMNGNHVAQRCLLYLLPEYSKFLFQATT--NNCVELATDRHGCCVIQKCLTHSEGEQRHR 625
++NGNHV Q+C+ P F+ A NN + ++T +HGCCV+QK L+ +Q +
Sbjct: 338 DLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFK 397
Query: 626 LVSKITSNALILSQDPFGNYVVQFVFELRLP--WATMDILDQLEGNYGDLSMQKYSSNVV 683
+ KI L D FGNY++QF+ +++ + ++ ++L LS K+SSNVV
Sbjct: 398 ISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKFSSNVV 457
Query: 684 EKCLKY-------------GDDERRAHIIQELISNA--------------HLDQVMLDPY 716
EK +K G +R + + + NA +L+ ++ D +
Sbjct: 458 EKFIKKLFRIITGFIVNNNGGASQRTAVASDDVINASMNILLTTIDIFTVNLNVLIRDNF 517
Query: 717 GNYVIQAAL 725
GNY +Q L
Sbjct: 518 GNYALQTLL 526
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 599 VELATDRHGCCVIQKCL-THSEGEQ-RHRLVSKITSNALILSQDPFGNYVVQFVFELRLP 656
++LATD+ GC +QK L T SE R + +I L L DPFGNY+VQ + +
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 657 WATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHII-----QELISNAHLDQV 711
++ + N +S+ +Y + ++K + D+E + +I QE S + +
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTL 335
Query: 712 MLDPYGNYVIQAALQQSKGGVHSALVDAI--RPHVPVLRTSPYG----KKVLSCNSLKK 764
+ D GN+VIQ + + ++DAI + ++ + T +G +K+LS +L++
Sbjct: 336 INDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQ 394
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 437 IIRPQPQKYNSVEEVT---GRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVE 493
I + P K+ + + I ++ +HGC LQ+ +S TL+ I KI V+I+ +
Sbjct: 349 IFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPG 408
Query: 494 LMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDL-----VRISTRAVQKVIETL 545
L+ D FGNY++Q LL++ D + + + R + +L ++ S+ V+K I+ L
Sbjct: 409 LINDQFGNYIIQFLLDIKELDFYL-LAELFNRLSNELCQLSCLKFSSNVVEKFIKKL 464
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 669 NYGDLSMQKYSSNVVEKCLKYGDDERRAH-IIQELISNAHLDQVMLDPYGNYVIQAALQQ 727
+Y L+ ++ ++K L+ + ++ E I LD ++LDP+GNY++Q
Sbjct: 214 DYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLD-LILDPFGNYLVQKLCDY 272
Query: 728 SKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ L+ I P+V + + YG + L
Sbjct: 273 LTAEQKTLLIQTIYPNVFQISINQYGTRSL 302
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 21/316 (6%)
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR 516
+++ DQ FLQ+K+ + + + I II I LM + FGN+LVQ+ E Q
Sbjct: 368 IVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQI 427
Query: 517 MQILQAITRKAGDLVRIST-----RAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNG 571
Q+ A+ G++++++T VQK I+ + + ++ + L I I +
Sbjct: 428 RQMGSAML---GNMLKLATDPFGCHVVQKAIDNVTEDIKLAM-MDELFLTIDVTIMHHYA 483
Query: 572 NHVAQRCLLYLLPEYSKFLFQATTN----NCVELATDRHGCCVIQKCLTHSEGEQRHRLV 627
HV Q+ EY + N E+A +G V+Q + + + +
Sbjct: 484 CHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECI 543
Query: 628 SKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCL 687
+I + +++ +GN+VVQ + E ++D L + S+ +++S V+EK +
Sbjct: 544 EEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAI 603
Query: 688 KYGDDERRAHIIQELISNAHLDQ-------VMLDPYGNYVIQAALQQSKGGVHSALVDAI 740
K G + +++ I+NA +D+ + D YGNY+IQ +Q + + ++ I
Sbjct: 604 KSGPKNFISLYLKQ-ITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHI 662
Query: 741 RPHVPVLRTSPYGKKV 756
+ H+ LR S YG+KV
Sbjct: 663 KKHMVSLRGSKYGQKV 678
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 99/208 (47%), Gaps = 6/208 (2%)
Query: 554 VVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQK 613
+V S+ I L+ N GN + QRC + + + A N ++LATD GC V+QK
Sbjct: 394 IVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQK 453
Query: 614 CLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQ----LEGN 669
+ + + + ++ ++ + + +V Q +FE + ++++++ L G
Sbjct: 454 AIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGK 513
Query: 670 YGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSK 729
+ ++++ + S VV+ + ++ + I+E+I HLD + +GN+V+Q ++ +
Sbjct: 514 WHEVAVGENGSLVVQNMFENCVEKDKRECIEEII--FHLDGIARGQWGNWVVQHMVENGQ 571
Query: 730 GGVHSALVDAIRPHVPVLRTSPYGKKVL 757
G ++DA+ + KV+
Sbjct: 572 GEDLKRVIDALLNRAVEFSIDQFASKVI 599
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 441 QPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFG 500
+ K +EE+ + +A+ Q G +Q + G ED++++ +++ VE D F
Sbjct: 536 EKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFA 595
Query: 501 NYLVQKLLEVCNEDQRMQILQAITRKAGD-----LVRISTRA-----VQKVIETLKSPEQ 550
+ +++K ++ ++ L+ IT D L+ I++ +Q++I+ L P +
Sbjct: 596 SKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQ-LGQPAE 654
Query: 551 FSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEY 586
+LV++ +K +V+L + G VA YL+ ++
Sbjct: 655 KNLVITHIKKHMVSLRGSKYGQKVA-----YLVEKW 685
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 7/193 (3%)
Query: 466 RFLQRKISEG--TLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
R +++ I G T E+IE I ++D + EL +D GN +VQK E C++ + +L+ I
Sbjct: 169 REIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERI 228
Query: 524 T--RKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLY 581
A + + T A QK+I+ + +Q L+V L+P L + GN+VAQ CL +
Sbjct: 229 APYLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRF 288
Query: 582 LLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG--EQRHRLVSKITSNALILSQ 639
P+ + FLF+ +C E+ R G I+ CL + EQ+ +V+ I N+ +L+
Sbjct: 289 KYPK-NTFLFEVMARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINSHLLAT 347
Query: 640 DPFGNYVVQFVFE 652
+ G ++ ++ +
Sbjct: 348 NSNGMLLLTWLLD 360
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 536 RAVQKVIET-LKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
R ++K I++ + E+ ++ S+ + L + GN V Q+ Y + + +
Sbjct: 169 REIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERI 228
Query: 595 TNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK-ITSNALILSQDPFGNYVVQFVFEL 653
+ ++G QK + + E++ L+ K + +L D FGNYV Q
Sbjct: 229 APYLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRF 288
Query: 654 RLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDD--ERRAHIIQELISNAHL 708
+ P T + + + + ++ ++ + + CL+ + E++A ++ +I N+HL
Sbjct: 289 KYPKNTF-LFEVMARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINSHL 344
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 13/196 (6%)
Query: 466 RFLQRKISEG--TLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQILQAI 523
R ++++I G T E++E I + +D + +L +D GN +VQKL + C++ + +L+
Sbjct: 751 RQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKEMMLE-- 808
Query: 524 TRKAGDLVRI-----STRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRC 578
R A L +I T A QK+++ + Q L+ L+P I L + GN+V Q C
Sbjct: 809 -RIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTC 867
Query: 579 LLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE--GEQRHRLVSKITSNALI 636
L + P + F+F+A N +A R+G ++ CL + EQR + + IT ++
Sbjct: 868 LKFGAP-MNDFVFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVH 926
Query: 637 LSQDPFGNYVVQFVFE 652
L+ + G ++ ++ E
Sbjct: 927 LAMNGNGTLLLTYLVE 942
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 81/191 (42%), Gaps = 19/191 (9%)
Query: 571 GNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK- 629
GN V Q+ Y + + + + ++ ++G QK + + E + RL++K
Sbjct: 787 GNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKH 846
Query: 630 ITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKY 689
+ +L D FGNYVVQ + P + + + + ++ +Y S V CL+
Sbjct: 847 LQPYIPLLFADQFGNYVVQTCLKFGAPMNDF-VFEAILNQFWVIAQSRYGSRAVRACLES 905
Query: 690 GD--DERRAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIR-PHVPV 746
D +E+R + + Y + A+ + + + LV+ + PH+P+
Sbjct: 906 PDVTEEQRVLVAAAITV--------------YSVHLAMNGNGTLLLTYLVENMNYPHIPI 951
Query: 747 LRTSPYGKKVL 757
L T + + ++
Sbjct: 952 LLTRRFVQDIV 962
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Query: 590 LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQF 649
L++ T + LA GC + L G R + + +NA LS DP+G +VVQ
Sbjct: 326 LYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQN 385
Query: 650 VFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNA-HL 708
+ L+ P AT I ++L G++ L+M++ S VVEKCLK D R +++E NA
Sbjct: 386 ILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLK--SDFARDQVLEEFRGNAKEW 443
Query: 709 DQVMLDPYGNYVIQAALQQSKGGVHSAL----VDAIRPHV 744
++ D +GN+V+Q+AL+ K L V+ +RPH
Sbjct: 444 VRMTTDKFGNFVVQSALRVMKEKEMRPLLREFVEKLRPHF 483
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 10/211 (4%)
Query: 444 KYNSVEEVTGRIYL-MAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNY 502
K S T RI+L +A +Q+G + L+ D +F + + LM+D +G
Sbjct: 251 KIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLD-HLLFCAVDTNFFLLMSDKYGRG 309
Query: 503 LVQKLLEVCNEDQRMQILQAITRKAGDLVRISTR--AVQKVIETLKSPEQFSLVVSSLKP 560
L+ + ++ ++ + + L R+ T A+ V++ ++ + L+ +
Sbjct: 310 LIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYR-DLIFECVAN 368
Query: 561 GIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEG 620
L + G HV Q L+ P + + + + LA +R G V++KCL
Sbjct: 369 NADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLKSDFA 428
Query: 621 EQRHRLVSKITSNA---LILSQDPFGNYVVQ 648
R +++ + NA + ++ D FGN+VVQ
Sbjct: 429 --RDQVLEEFRGNAKEWVRMTTDKFGNFVVQ 457
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 160/326 (49%), Gaps = 49/326 (15%)
Query: 447 SVEEV--TGRIYLMAKDQHGCRFLQRKISEGTLEDIEK--IFVEII---DHIVELMTDPF 499
S+ EV +G + A D+ GC+FL++ + +G+L +K +F ++I D ++L T+ F
Sbjct: 184 SLSEVLDSGDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIF 242
Query: 500 GNYLVQKLLEV---CNED---QRMQILQ-AITRKAGDLV--RISTRAVQKVIETLKSPEQ 550
GNYLVQ ++ + N+D +R + L+ I+ + D+ + + R +Q ++ +
Sbjct: 243 GNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLA 302
Query: 551 FSLVVSSLKPG-IVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHG 607
LV + + ++ + + N NHV Q+ + + + +F+ F AT + ++ +D++G
Sbjct: 303 CKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYG 362
Query: 608 CCVIQKC------------LTHSEGEQR----HRLVSKITSNALILSQDPFGNYVVQFVF 651
C V+Q LT + R RL++ +T+ L+ + + NY++Q +
Sbjct: 363 CRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 422
Query: 652 ---ELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS---- 704
+L + + I L N LS +K++S+VVEK + E A ++ E+
Sbjct: 423 SNDDLAV-YRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIP 481
Query: 705 -----NAHLDQVMLDPYGNYVIQAAL 725
LD +M +GNYV+Q L
Sbjct: 482 HPDTGKDALDIMMFHQFGNYVVQCML 507
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 53/184 (28%)
Query: 595 TNNCVELATDRHGCCVIQKCLTHS-EGEQRHRLVSKIT---SNALILSQDPFGNYVVQFV 650
+ + ++ A D+ GC ++K + S Q+ +L ++ + L LS + FGNY+VQ V
Sbjct: 191 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSV 250
Query: 651 FELRLPWATMD---------ILDQLEGNYGDLSMQKYSSNVVEKCLKYGD---------- 691
+ L AT D + + + D+ + K++ V++ L+ D
Sbjct: 251 IGISL--ATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQA 308
Query: 692 ------------DERRAHIIQELI----------------SNAHLDQVMLDPYGNYVIQA 723
D+ H+IQ+++ + HL Q+ D YG V+Q
Sbjct: 309 LPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQT 368
Query: 724 ALQQ 727
+++
Sbjct: 369 IIEK 372
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 154/326 (47%), Gaps = 49/326 (15%)
Query: 447 SVEEV--TGRIYLMAKDQHGCRFLQRKISEGTLEDIEK--IFVEII---DHIVELMTDPF 499
S+ EV +G + A D+ GC+FL++ + +G+L +K +F ++I D ++L T+ F
Sbjct: 182 SLSEVLDSGDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIF 240
Query: 500 GNYLVQKLLEVC-------NEDQRMQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQ 550
GNY VQ+++ + N ++ ++ I+ + D+ + + R +Q ++ +
Sbjct: 241 GNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLA 300
Query: 551 FSLVVSSLKPG-IVTLIKNMNGNHVAQRCLLYLLPEYSKFL--FQATTNNCVELATDRHG 607
LV + + ++ + + N NHV Q+ + + + +F+ F AT + ++ D++G
Sbjct: 301 CKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYG 360
Query: 608 CCVIQKCLT----------------HSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVF 651
C V+Q + H RL++ +T+ L+ + + NY++Q +
Sbjct: 361 CRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 420
Query: 652 ---ELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS---- 704
+L + + I L N LS +K++S+VVEK + E A ++ E+
Sbjct: 421 SNDDLAV-YRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLAEMMDEIFDGYMP 479
Query: 705 -----NAHLDQVMLDPYGNYVIQAAL 725
LD +M +GNYV+Q L
Sbjct: 480 HPGTGKDALDIMMFHQFGNYVVQCML 505
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 49/182 (26%)
Query: 595 TNNCVELATDRHGCCVIQKCLTHS-EGEQRHRLVSKIT---SNALILSQDPFGNYVVQFV 650
+ + ++ A D+ GC ++K + S Q+ +L ++ + L LS + FGNY VQ +
Sbjct: 189 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEI 248
Query: 651 FELRLPWATMDILDQLE-------GNYGDLSMQKYSSNVVEKCLKYGD------------ 691
+ L D + + E D+ + K++ V++ L+ D
Sbjct: 249 IGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 308
Query: 692 ----------DERRAHIIQELISN----------------AHLDQVMLDPYGNYVIQAAL 725
D+ H+IQ++++ HL Q+ D YG V+Q +
Sbjct: 309 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTII 368
Query: 726 QQ 727
++
Sbjct: 369 EK 370
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 601 LATDRHGCCVIQKCLTHSEG-EQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWAT 659
LA D++GC + + +T + R +L+ + +NAL+LS D +GN+VVQ V +LR T
Sbjct: 161 LAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCT 220
Query: 660 MDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQVMLDPYG 717
+I D+L G +LS +KY S +VE+ L+ G D A ++ +L++ L ++ YG
Sbjct: 221 RNIADKLCGYCVELSFKKYGSYIVERLLEAG-DVPMATVVLDLLACKTEMLIRLARSEYG 279
Query: 718 NYVIQAALQQS----KGGVHSALVDAIRPHVPVLRTSPYGK 754
N+V+ AL+ + + LV+ + P+ +L SP K
Sbjct: 280 NFVVCKALELTNEILTADLFYGLVNRLMPYRHLLHRSPRSK 320
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 98/215 (45%), Gaps = 12/215 (5%)
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVE-IIDHIVELMTDPFGNYLVQKLLEVCNEDQ 515
++ +++G + LQ+ + G +D++ F E I+ + +MTD + +Y+ + + V +D+
Sbjct: 89 VITTNKNGSKTLQKLM--GMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDK 146
Query: 516 RM----QILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNG 571
R QIL+ AGD + A+ ++I L P ++ + + L + G
Sbjct: 147 RELMYDQILRYACFLAGD--QYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYG 204
Query: 572 NHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE---GEQRHRLVS 628
N V Q L ++ + CVEL+ ++G ++++ L + L++
Sbjct: 205 NFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLLA 264
Query: 629 KITSNALILSQDPFGNYVVQFVFELRLPWATMDIL 663
T + L++ +GN+VV EL T D+
Sbjct: 265 CKTEMLIRLARSEYGNFVVCKALELTNEILTADLF 299
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 125/268 (46%), Gaps = 14/268 (5%)
Query: 449 EEVTGRIYLMAKDQHGCRFLQRKISEGTLED--IEKIFVEIIDHIVELMTDPFGNYLVQK 506
E ++GR + D R L++ I D IE++ + ++D + EL +D GN +VQK
Sbjct: 582 EPLSGREF----DPPKLRELRKSIDSNAFSDLEIEQLAIAMLDELPELSSDYLGNTIVQK 637
Query: 507 LLEVCNEDQRMQILQAITR--KAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVT 564
L E ++ + +L+ ++ + + + T A QK+I +P Q V +K
Sbjct: 638 LFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTP 697
Query: 565 LIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSE---GE 621
LI + GN+V Q L + P +++F+F++ N + +R+G ++ CL + E
Sbjct: 698 LINDQFGNYVIQCVLKFGFP-WNQFIFESIIANFWVIVQNRYGARAVRACLEAHDIVTPE 756
Query: 622 QRHRLVSKITSNALILSQDPFGNYVVQFVFELR-LPWATMDILDQLEGNYGDLSMQKYSS 680
Q L + I + A LS + G +V + + LP + +L +L + +S
Sbjct: 757 QSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLAS 816
Query: 681 NVVEKCLKY-GDDERRAHIIQELISNAH 707
+ K L Y GDD R I+ L N +
Sbjct: 817 LTILKVLNYRGDDNARKIILDSLFGNVN 844
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 11/269 (4%)
Query: 491 IVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETL 545
+ LMTD G ++++ ++ + ++ +T + + I T R VQK++
Sbjct: 45 LFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG-- 102
Query: 546 KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDR 605
KS + + +++ + + + ++V R ++ K L++ + ++LA D+
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 606 HGCCVIQKCLTHSEG-EQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD 664
HGC + +T ++ R +L+ + SNAL LS D GN+VVQ V L +I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 665 QLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAA 724
L G +LS +KY S +VEK L+ + + L ++ + +GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 725 L---QQSKGGVHSALVDAIRPHVPVLRTS 750
L + S+ + LV + P + +LR S
Sbjct: 283 LRFTKMSRMDLFWGLVQKLMPFIRLLRRS 311
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 126/269 (46%), Gaps = 11/269 (4%)
Query: 491 IVELMTDPFGNYLVQKLLEVCNEDQRMQILQAITRKAGDLVRIST-----RAVQKVIETL 545
+ LMTD G ++++ ++ + ++ +T + + I T R VQK++
Sbjct: 45 LFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG-- 102
Query: 546 KSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQATTNNCVELATDR 605
KS + + +++ + + + ++V R ++ K L++ + ++LA D+
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 606 HGCCVIQKCLTHSEG-EQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD 664
HGC + +T ++ R +L+ + SNAL LS D GN+VVQ V L +I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 665 QLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAA 724
L G +LS +KY S +VEK L+ + + L ++ + +GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 725 LQQSK---GGVHSALVDAIRPHVPVLRTS 750
L+ +K + LV + P + +LR S
Sbjct: 283 LRFTKEMRMDLFWGLVQKLMPFIHLLRRS 311
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 122/237 (51%), Gaps = 16/237 (6%)
Query: 535 TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
++ +QK++ K+ + +L +++ + +I + ++V +R + + K +++
Sbjct: 104 SKRIQKLLG--KTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHI 161
Query: 595 TNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELR 654
+ +A D+HG + +T + R++L I AL+LS D +GN+V+Q V +L
Sbjct: 162 LHYASHIARDKHGNLALNDIITDA---YRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLN 218
Query: 655 LPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELI--SNAHLDQVM 712
+ +I+ L G++ DLS QKY S VV+ L+ E +++EL+ L ++
Sbjct: 219 DLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLLE--TKESMVVVVEELMECEGDMLMRLA 276
Query: 713 LDPYGNYVIQAALQQS-----KGGVHSALVDAIRPHVPVLRTSPYGKKVLSC-NSLK 763
+ YGN+++ AL+ + + + LV ++P +LR S GK + S NS++
Sbjct: 277 RNEYGNFLVCKALRVTQKEMVRTDLFWGLVHKLKPFHNLLRWSR-GKNIASILNSIR 332
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/291 (19%), Positives = 129/291 (44%), Gaps = 60/291 (20%)
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVE-IIDHIVELMTDPFGNYLVQKLLEVCNEDQ 515
++A++ +G + +Q+ + G +D++ +F I+ + ++TD + +Y+V++ + V ++ +
Sbjct: 96 MIARNMNGSKRIQKLL--GKTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKK 153
Query: 516 RMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVA 575
+ + + I A + R K G N+ N +
Sbjct: 154 KKAMYEHILHYASHIARD-------------------------KHG------NLALNDI- 181
Query: 576 QRCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNAL 635
+ Y LF + + L+ D +G VIQ+ L ++ ++ +V + + +
Sbjct: 182 ------ITDAYRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFV 235
Query: 636 ILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQ----KYSSNVVEKCLKYGD 691
LS +G+YVV + E + + + ++++L GD+ M+ +Y + +V K L+
Sbjct: 236 DLSFQKYGSYVVDVLLETK--ESMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVTQ 293
Query: 692 DER-RAHIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIR 741
E R + L+ L P+ N L+ S+G ++++++IR
Sbjct: 294 KEMVRTDLFWGLVHK-------LKPFHNL-----LRWSRGKNIASILNSIR 332
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 132/313 (42%), Gaps = 15/313 (4%)
Query: 457 LMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQR 516
+ DQ LQ+++ +ED + I+ V LM + FGN+L+QK E E Q
Sbjct: 262 IFQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQL 321
Query: 517 MQILQAITRKAGDLV--RISTRAVQKVIETLKSPEQFS-LVVSSLKPGIVTLIKNMNGNH 573
+ + +L + +QK +E PE+F+ ++ L + + + H
Sbjct: 322 QSFSYFLKKHVKELSIDAFGSHVLQKSLEIY--PERFTNNLIEELIECLPATLMQRHSCH 379
Query: 574 VAQRCLLYLLPEYSKFLF----QATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSK 629
V Q+ +F + ++++ G V+Q + + + + + +
Sbjct: 380 VWQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDE 439
Query: 630 ITSNALILSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKY 689
I +N + +GN+V+Q + E IL+ L S +Y+S VVE+ L+
Sbjct: 440 IINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRV 499
Query: 690 GDDERRAHIIQELIS------NAHLDQVMLDPYGNYVIQAALQQSKGGVHSALVDAIRPH 743
++E+ + L ++ + YGNY++Q LQ + + + + ++ H
Sbjct: 500 CHVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKH 559
Query: 744 VPVLRTSPYGKKV 756
+ LR YG+++
Sbjct: 560 MVSLRGHKYGQRI 572
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 554 VVSSLKPGIVTLIKNMNGNHVAQRCLLY----LLPEYSKFLFQATTNNCVELATDRHGCC 609
+++++ P VTL+KN GN + Q+C Y L +S FL + EL+ D G
Sbjct: 288 LINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFL----KKHVKELSIDAFGSH 343
Query: 610 VIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQFVFELRLPWATMDILD----Q 665
V+QK L + L+ ++ +V Q FE R I D +
Sbjct: 344 VLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKK 403
Query: 666 LEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISNAHLDQVMLDPYGNYVIQAAL 725
++G + +S+ + S VV+ + ++ + + E+I+N +DQ++ +GN+VIQ +
Sbjct: 404 MQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINN--MDQIICGQWGNWVIQHII 461
Query: 726 QQSKGGVHSALVDAIRPHVPVLRTSPYGKKVL 757
+ +++++ V T+ Y KV+
Sbjct: 462 EHGSEPDKQRILNSLLKEVESYSTNRYASKVV 493
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 118/236 (50%), Gaps = 10/236 (4%)
Query: 535 TRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQRCLLYLLPEYSKFLFQAT 594
++++QK++ + F V ++ + ++ + ++VA + + + + ++
Sbjct: 97 SKSLQKLMRMSDDMDVFFFV--AIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMYDHI 154
Query: 595 TNNCVELATDRHGCCVIQKCLTHSEG-EQRHRLVSKITSNALILSQDPFGNYVVQFVFEL 653
+ LA D++GC + + + + R L+ +++NAL+LS D +GN+VVQ V +L
Sbjct: 155 LRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHVLKL 214
Query: 654 RLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELIS--NAHLDQV 711
T +I D+L G +LS +KY S +VE+ L+ D A I+ +L++ L ++
Sbjct: 215 HDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLEVRDIP-MATIVLDLLACKTEMLIRL 273
Query: 712 MLDPYGNYVIQAALQQS----KGGVHSALVDAIRPHVPVLRTSPYGKKVLSCNSLK 763
GN+V+ L+ + + +LV+ +RP+ +L P K V S++
Sbjct: 274 ARSENGNFVVCKLLELTNDILTADLFYSLVNKLRPYRFLLHRFPESKIVAILGSMR 329
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 12/246 (4%)
Query: 461 DQHGCRFLQRKISEGTLEDIE--KIFVEIIDHIVELMTDPFGNYLVQKLLEVCNEDQRMQ 518
D R L+++ +L IE ++ + ++D + EL +D GN ++QKL E + R
Sbjct: 549 DAPKLRELRKQFDSNSLSTIEMEQLAIVMLDQLPELSSDYLGNTVIQKLFENSSNIIRDI 608
Query: 519 ILQAITR--KAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNMNGNHVAQ 576
+L+ + + + + T QK+I+ +P Q +LV S + L + GN+V Q
Sbjct: 609 MLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQ 668
Query: 577 RCLLYLLPEYSKFLFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALI 636
L + P ++ F+F++ ++ + +R+G ++ CL + +L++ ITS ++
Sbjct: 669 GILKFGFP-WNSFIFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLT-ITSLIIV 726
Query: 637 LS----QDPFGNYVVQFVFEL-RLPWATMDILDQL-EGNYGDLSMQKYSSNVVEKCLKYG 690
LS D G ++ ++ + LP + + D+L N L K S V K L
Sbjct: 727 LSPYLATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLR 786
Query: 691 DDERRA 696
E A
Sbjct: 787 GGEEEA 792
Score = 37.0 bits (84), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 637 LSQDPFGNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRA 696
LS D GN V+Q +FE +L + + + K + V +K +K + R+
Sbjct: 584 LSSDYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQI 643
Query: 697 HIIQELISNAHLDQVMLDPYGNYVIQAALQQSKGGV--HSALVDAIRPHVPVLRTSPYGK 754
+++ +S+ + + D +GNYVIQ L K G +S + +++ H + + YG
Sbjct: 644 NLVTSGVSD-YCTPLFNDQFGNYVIQGIL---KFGFPWNSFIFESVLSHFWTIVQNRYGS 699
Query: 755 KVL 757
+ +
Sbjct: 700 RAV 702
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 590 LFQATTNNCVELATDRHGCCVIQKCLTHSEGEQRHRLVSKITSNALILSQDPFGNYVVQF 649
LF N +L V+Q C+ +QR + +++ + + L + P+G Y+
Sbjct: 158 LFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIK 217
Query: 650 VFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDD--ERRA----------H 697
+F+ P IL ++ GN + + ++ VVE + + ++RA
Sbjct: 218 IFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEFQ 277
Query: 698 IIQELISNAHLDQVMLD 714
+ ++ + H+D++++D
Sbjct: 278 VFKDRTQDIHIDKLLID 294
>sp|Q9FGE7|PUM26_ARATH Pumilio homolog 26 OS=Arabidopsis thaliana GN=APUM26 PE=2 SV=1
Length = 187
Score = 40.0 bits (92), Expect = 0.066, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 626 LVSKITSNALILSQDPF-GNYVVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVE 684
++ +I +NAL L+++P G +V+ +R P T+ I +L +Y +LS ++ SN+VE
Sbjct: 115 ILRRIGNNALYLTRNPLRGICLVEKAINVRDPDCTVFIALKLHSHYVELSFEELGSNIVE 174
Query: 685 KCLKYGD 691
K L G+
Sbjct: 175 KLLSVGE 181
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 646 VVQFVFELRLPWATMDILDQLEGNYGDLSMQKYSSNVVEKCLKYGDDERRAHIIQELISN 705
++Q+ E + WA ++L+G+ +LS KYS N+V+K L YG + A II+
Sbjct: 185 LIQYGSEEQRKWA----FEELQGDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSF--K 238
Query: 706 AHLDQVMLDPYGNYVIQAA 724
H+ +++ + +++ A
Sbjct: 239 GHVRKMLRHSEASAIVEYA 257
>sp|Q92347|NOP9_SCHPO Nucleolar protein 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nop9 PE=3 SV=1
Length = 655
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 450 EVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQKLLE 509
EV G+ ++ + G + L++ T I+ F + H VEL+ FG+Y +KLL
Sbjct: 96 EVQGKELIVCNNVFGSKVLEKLFPLSTSRQIKSFFSALNGHYVELIQTTFGSYAFEKLLS 155
Query: 510 VCNEDQRMQILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLKPGIVTLIKNM 569
++ Q +T D++ V ETL + + ++P + L+ +
Sbjct: 156 HMAAILNLET-QGVTEDQDDVLEGENENVFMTAETL-----LMYMYNEIRPEVSMLMSHK 209
Query: 570 NGNHVAQRCLLYLLPEYSKFLFQATTNNCVE 600
HV + ++LL + +F++ +E
Sbjct: 210 LAVHVLGK--IFLLLDGYRFVYHDGNRTTME 238
>sp|Q86U38|NOP9_HUMAN Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 SV=1
Length = 636
Score = 36.6 bits (83), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 408 LSLSTPNAGCFQIDGLNSWPLSSDSMDLKIIRPQPQKYNSVEEVTGRIYLMAKDQHGCRF 467
LSL+ AG +D + L+S S+ K+ R ++ + G+ +A +HG R
Sbjct: 515 LSLAQSPAGSHVLDAI----LTSPSVTRKLRR------RVLQNLKGQYVALACSRHGSRV 564
Query: 468 LQRKISEGTLEDIEKIFVEIIDHIVELMTDPFGNYLVQ 505
L S L ++I E+ + EL+ DPFG+++ +
Sbjct: 565 LDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVAR 602
Score = 33.5 bits (75), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 518 QILQAITRKAGDLVRISTRAVQKVIETLKSPEQFSLVVSSLK----PGIVTLIKNMNGNH 573
Q+ A R GD V + + + + +P LV+ SL P +++L ++ G+H
Sbjct: 470 QVAMAAARALGD-VTVLGSLLLQHLLHFSTP---GLVLRSLGALTGPQLLSLAQSPAGSH 525
Query: 574 VAQRCLLYLLPEYSKFLFQATTNNC----VELATDRHGCCVIQKCLTHSEGEQRHRLVSK 629
V L P ++ L + N V LA RHG V+ + + R + ++
Sbjct: 526 VLDAILTS--PSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAE 583
Query: 630 ITSNALILSQDPFGNYVVQFV 650
+ L +DPFG++V + V
Sbjct: 584 LGEQNQELIRDPFGHHVARNV 604
>sp|B3LQ92|NOP9_YEAS1 Nucleolar protein 9 OS=Saccharomyces cerevisiae (strain RM11-1a)
GN=NOP9 PE=3 SV=1
Length = 666
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 383 GTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAG-CFQIDGL-----NSWPLSSDSMDLK 436
G G ES + I+QS + +++P Q++G+ + W L ++ D K
Sbjct: 272 GFTNGAESRSDISQSTITKFREYSVDKVASPVIQLIIQVEGIFDRDRSFWRLVFNTADEK 331
Query: 437 IIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIF-VEIIDHIVELM 495
P++ + +E YL++ D G FL+ I L+ +E+++ + + D IV+L
Sbjct: 332 ----DPKEESFLE------YLLS-DPVGSHFLENVIGSARLKYVERLYRLYMKDRIVKLA 380
Query: 496 T-DPFGNYLVQKLLEVCNEDQRMQILQAI 523
D G ++V+ LLE E QIL A+
Sbjct: 381 KRDTTGTFVVRALLEHLKEKDVKQILDAV 409
>sp|P47077|NOP9_YEAST Nucleolar protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP9 PE=1 SV=1
Length = 666
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 383 GTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAG-CFQIDGL-----NSWPLSSDSMDLK 436
G G ES + I+QS + +++P Q++G+ + W L ++ D K
Sbjct: 272 GFTNGAESRSDISQSTITKFREYSVDKVASPVIQLIIQVEGIFDRDRSFWRLVFNTADEK 331
Query: 437 IIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIF-VEIIDHIVELM 495
P++ + +E YL++ D G FL+ I L+ +E+++ + + D IV+L
Sbjct: 332 ----DPKEESFLE------YLLS-DPVGSHFLENVIGSARLKYVERLYRLYMKDRIVKLA 380
Query: 496 T-DPFGNYLVQKLLEVCNEDQRMQILQAI 523
D G ++V+ LLE E QIL A+
Sbjct: 381 KRDTTGAFVVRALLEHLKEKDVKQILDAV 409
>sp|C8ZBK1|NOP9_YEAS8 Nucleolar protein 9 OS=Saccharomyces cerevisiae (strain Lalvin
EC1118 / Prise de mousse) GN=NOP9 PE=3 SV=2
Length = 666
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 383 GTVGGHESLNHINQSGKLLSNGHLCLSLSTPNAG-CFQIDGL-----NSWPLSSDSMDLK 436
G G ES + I+QS + +++P Q++G+ + W L ++ D K
Sbjct: 272 GFTNGAESRSDISQSTITKFREYSVDKVASPVIQLIIQVEGIFDRDRSFWRLVFNTADEK 331
Query: 437 IIRPQPQKYNSVEEVTGRIYLMAKDQHGCRFLQRKISEGTLEDIEKIF-VEIIDHIVELM 495
P++ + +E YL++ D G FL+ I L+ +E+++ + + D IV+L
Sbjct: 332 ----DPKEESFLE------YLLS-DPVGSHFLENVIGSARLKYVERLYRLYMKDRIVKLA 380
Query: 496 T-DPFGNYLVQKLLEVCNEDQRMQILQAI 523
D G ++V+ LLE E QIL A+
Sbjct: 381 KRDTTGAFVVRALLEHLKEKDVKQILDAV 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,575,731
Number of Sequences: 539616
Number of extensions: 12286991
Number of successful extensions: 39123
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 36581
Number of HSP's gapped (non-prelim): 1548
length of query: 764
length of database: 191,569,459
effective HSP length: 125
effective length of query: 639
effective length of database: 124,117,459
effective search space: 79311056301
effective search space used: 79311056301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)