Query 004285
Match_columns 763
No_of_seqs 298 out of 1044
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 20:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 7E-132 2E-136 1113.8 50.8 611 2-763 1-613 (617)
2 PF03124 EXS: EXS family; Int 100.0 1.4E-78 3E-83 666.0 30.8 332 408-742 2-345 (345)
3 COG5409 EXS domain-containing 100.0 3.4E-64 7.4E-69 520.5 21.4 367 370-754 4-379 (384)
4 PF03105 SPX: SPX domain; Int 100.0 3.4E-32 7.3E-37 287.8 21.6 272 2-318 1-274 (275)
5 KOG1161 Protein involved in va 100.0 4.4E-30 9.6E-35 267.5 18.5 177 2-349 1-177 (310)
6 COG5036 SPX domain-containing 99.9 1.4E-22 3.1E-27 214.7 14.6 169 2-349 1-169 (509)
7 COG5408 SPX domain-containing 99.9 6.1E-22 1.3E-26 206.3 16.8 55 264-318 237-291 (296)
8 COG3872 Predicted metal-depend 51.7 1.8E+02 0.0039 30.9 11.2 39 414-452 152-195 (318)
9 PF14193 DUF4315: Domain of un 30.9 1.3E+02 0.0029 26.4 5.6 35 115-153 3-37 (83)
10 KOG1281 Na+/dicarboxylate, Na+ 28.7 42 0.00091 39.6 2.8 38 280-317 10-49 (586)
11 PF08733 PalH: PalH/RIM21; In 28.4 6.8E+02 0.015 27.9 12.2 35 295-331 136-171 (348)
12 PF11120 DUF2636: Protein of u 28.0 60 0.0013 26.9 2.8 36 494-529 9-44 (62)
13 PF10777 YlaC: Inner membrane 22.4 4.3E+02 0.0094 25.9 7.8 10 372-381 37-46 (155)
14 PF05478 Prominin: Prominin; 21.8 3.5E+02 0.0075 33.8 9.2 39 109-147 183-222 (806)
15 PF05767 Pox_A14: Poxvirus vir 21.4 4E+02 0.0088 23.8 6.7 22 369-391 10-31 (92)
16 PF03904 DUF334: Domain of unk 20.9 9.8E+02 0.021 25.1 14.0 40 263-309 73-112 (230)
17 PF06570 DUF1129: Protein of u 20.7 9E+02 0.019 24.6 13.9 11 347-357 53-63 (206)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-132 Score=1113.82 Aligned_cols=611 Identities=44% Similarity=0.755 Sum_probs=525.1
Q ss_pred CcchHHHhhccchhHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCccccccccccccccccCchhhhHHH
Q 004285 2 VKFSKELEAQLIPEWKDAFVNYWQLKKHIKKIKLSKMQQKQHHHHRDFNHNNGVFGLSICDPVRFLASKFSRDNEAENII 81 (763)
Q Consensus 2 MKFgk~l~~~~vPEW~~~Yi~Yk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (763)
|||||+|++|++|||+++||||+.|||+||++.+.... . .
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~-----~---------~-------------------------- 40 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPS-----S---------E-------------------------- 40 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCC-----c---------C--------------------------
Confidence 99999999999999999999999999999999874421 0 0
Q ss_pred HHhhhccccCCCchhhhHHHhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004285 82 QVKRKVMEEGDDHEVYETELAQLF-SEEDEVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELKQILIDR 160 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~~~~~~~ 160 (763)
+++.++.. ...+.|..||+.||.||+|||+||.+|++|+.+|.+.|++||+.+.+.|..
T Consensus 41 ----------------~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~---- 100 (617)
T KOG1162|consen 41 ----------------ETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVK---- 100 (617)
T ss_pred ----------------ccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 01111110 122678999999999999999999999999999999999999999876531
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHhhhcCccccccccchhhcccCCCCcccccCCCCCCCccchhhhhhhh
Q 004285 161 RRKPSGGIIPRSWTPCPRNSDISATETDDVIAALERNGVSFINAASSWAKTKKGKPKVAMRIDIPAETPARTISAVTSML 240 (763)
Q Consensus 161 ~~~~~~~~~~~~~s~~~~~~~~s~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~s~~~ 240 (763)
. ++ +.+ . . .++ .++
T Consensus 101 ~-~~----------------~~~--------------~----~--------------------------~~~-~~~---- 114 (617)
T KOG1162|consen 101 S-RS----------------SVD--------------I----S--------------------------DRA-ARL---- 114 (617)
T ss_pred c-cc----------------ccc--------------c----c--------------------------ccc-chh----
Confidence 0 00 000 0 0 000 000
Q ss_pred hhhhccCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCcccHHHHHhccc
Q 004285 241 WEDLVNNPKKESGTGNFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMVAFAKILKKFDKVSNQKASASYLQVVKR 320 (763)
Q Consensus 241 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~a~~e~y~~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v~~ 320 (763)
...+.++ +++++++||.|++|+|..|.+||+|+.||.|||+||+|||||+++++. ..|++.|+.
T Consensus 115 --------------~~~f~~~-~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~ 178 (617)
T KOG1162|consen 115 --------------RGKFTKV-LRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDK 178 (617)
T ss_pred --------------hhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHH
Confidence 0002233 778889999999999999999999999999999999999999999999 889999999
Q ss_pred CCccChhHHHHHHHHHHHHHHHHhcCCcHHHHHHhcCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCch
Q 004285 321 SHFISSDKVVRLMDEVESIFTKHFANNDRKKAMKFLRPQQQKESHMVTFFVGLFTGCFVSLFCVYAILAHLSGIFSANTE 400 (763)
Q Consensus 321 ~~F~~~~~l~~li~~ie~ly~~~f~~gd~~~A~~~Lr~~~~~~~~~~~F~~Gl~~G~~~~L~~~~~i~~~~~~~~~~~~~ 400 (763)
++|.++|++++++.++|++|+++|++|||++||+.||++ .+..|..+|.+|+++|+++.+.+++.+++.+.+++.+. +
T Consensus 179 s~f~~~~~i~~l~~~Ve~~f~~~fan~nr~~~m~~lr~~-~~e~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~~-~ 256 (617)
T KOG1162|consen 179 SYFTSSDEITRLMLEVEETFTKHFANGNRRKAMKVLRPK-LKEKHRPTFSTGFFVGCGIGLSVALVALIYLRNILQSE-Q 256 (617)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhCCChhHhhhhcCCc-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 999999999999999999999999999999999999999 55678888888888888888887777777777776664 7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHhhcCCCeeeEeeecCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004285 401 AAYMETVYPVFSVFALLCLHLFMYGCNLFMWKSTRINYNFIFEFSPNTALKYRDAFLLCTTFMTAVVAAMVVHLLLRASG 480 (763)
Q Consensus 401 ~~~~~~~~p~~~~~~l~~l~~~l~g~n~~iw~~~~INY~~Ife~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 480 (763)
..|+++++|+++ +++++++++++|+|+|+|+++||||+||||+++++++.+++++++++++..+...++..++.....+
T Consensus 257 ~~~~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~ 335 (617)
T KOG1162|consen 257 RFYMETMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSG 335 (617)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 789999999998 9999999999999999999999999999999999999999999999887666665555543332223
Q ss_pred CCCcchhhhhHHHHHHHHHHHHhcccccchhhHHHHHHHhhHhhccCceeeecchhhhhhhhhcHHHhhhhhhhhHhhhh
Q 004285 481 FSPSKIDAIPGILLLISICLLICPFDIFYRPTRYCFLRIIRNIICSPFYKVLMVDFFMADQLTSQIPLLRHLESTACYFL 560 (763)
Q Consensus 481 ~~~~~~~~~P~~~~~~~~~~l~~P~~i~~~~~R~~~~~~l~r~~~~pf~~V~F~dfflaD~ltSl~~~l~D~~~~~C~~~ 560 (763)
. ..+++|++++++++++|++|++++|+++|+|+++++.||+.+|+++|.|.|||+|||+||++.+++|+++++|+|.
T Consensus 336 ~---~~~~~Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~ 412 (617)
T KOG1162|consen 336 Q---TTELSPLILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYG 412 (617)
T ss_pred C---CcccchHHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeec
Confidence 2 2567899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCccccCCCcccCCcchhhHHHHHHHhHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHHHHhhhccCCC-chhhH
Q 004285 561 AGSFKTHHYDTCKNGRLYRELAYVISFLPYYWRAMQCARRWFDEYDTNHLANMGKYVSAMVAAGARLTYTRQSN-YLWFG 639 (763)
Q Consensus 561 ~~~~~~~~~~~C~~~~~~~~~~~~~~~lP~~~R~~QClrry~dt~~~~hl~Na~KY~~~~~~~~~~~~~~~~~~-~~w~~ 639 (763)
.|.|.... .|..+..+..+.++++++|+|+|++||+|||+|++.++||+||+||+++++++.+...|+...+ ..|++
T Consensus 413 ~~~~~~~~--~~~~~~~~~~~~~iva~lP~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~~~~~~ 490 (617)
T KOG1162|consen 413 TGDFQARR--TCYCKDDYIEFQSIVAVLPYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGSSLWFA 490 (617)
T ss_pred cccccccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 87665443 5555556677889999999999999999999999999999999999999999888877777665 49999
Q ss_pred HHHHHHHhhhHhhhhhhhhhhccCCCCCCCCCcccccccccCCchhhhhHhhhhHHhHHHHHhhhhccccccchhhHHHH
Q 004285 640 IVLVTSVVATIYQLYWDFVKDWGFLNPNSRNPWLRDDLILRNKSIYYISIALNVVLRIAWVETVMRFHVTTVQWRMLDFF 719 (763)
Q Consensus 640 ~~i~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~LR~~l~y~~~~~YY~aiv~n~ilRf~W~~~l~~~~~~~~~~~~~~~~ 719 (763)
+|++++++||+|+++||++|||||+.++++ +|||++++|++|++||+||+.|++||++|++.++........+...+++
T Consensus 491 l~~~~s~vaS~y~~~WDvv~DWgLl~~~~~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~~~~~~~i 569 (617)
T KOG1162|consen 491 LWILSSKVASLYTTYWDVVMDWGLLNRKSK-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFLSDSMVFI 569 (617)
T ss_pred HHHHHHHHHHHHHHHHHHheecccccccCc-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999988 9999999999999999999999999999987765332222226788999
Q ss_pred HHHHHHHhhhhheeeeehhhhhhcccCceeccccCCCCCCCCCC
Q 004285 720 MASLEVIRRGHWNFYRLENEHLSNVGKFRAVKAVPLPFREMDSD 763 (763)
Q Consensus 720 ~~~lEi~RR~iWnffRvEnEhi~N~~~fra~~~iplP~~~~~~~ 763 (763)
++.+||+||++||||||||||+||||+|||+++||+|++..+++
T Consensus 570 ~a~LEIiRRfiWnfFRLEnEhlnN~g~fRa~~~v~l~~~~~~~~ 613 (617)
T KOG1162|consen 570 MALLEIIRRFIWNFFRLENEHLNNVGKFRAFRDVPLPFSYMDES 613 (617)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhccccccCCchhhhcccc
Confidence 99999999999999999999999999999999999998876543
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.4e-78 Score=666.02 Aligned_cols=332 Identities=38% Similarity=0.695 Sum_probs=289.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhcCCCeeeEeeecCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC----C
Q 004285 408 YPVFSVFALLCLHLFMYGCNLFMWKSTRINYNFIFEFSPNTALKYRDAFLLCTTFMTAVVAAMVVHLLLRASGFS----P 483 (763)
Q Consensus 408 ~p~~~~~~l~~l~~~l~g~n~~iw~~~~INY~~Ife~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~ 483 (763)
+|++|+++++++++|+||+|+++|+++||||++|||+||++++++++++.+++.++.+...++..++.....+.. .
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 578999999999999999999999999999999999999999999999998877665555444444333322211 1
Q ss_pred cchhhhhHHHHHHHHHHHHhcccccchhhHHHHHHHhhHhhccCceeeecchhhhhhhhhcHHHhhhhhhhhHhhhhcCC
Q 004285 484 SKIDAIPGILLLISICLLICPFDIFYRPTRYCFLRIIRNIICSPFYKVLMVDFFMADQLTSQIPLLRHLESTACYFLAGS 563 (763)
Q Consensus 484 ~~~~~~P~~~~~~~~~~l~~P~~i~~~~~R~~~~~~l~r~~~~pf~~V~F~dfflaD~ltSl~~~l~D~~~~~C~~~~~~ 563 (763)
...+++|+++++++++++++|++++++++|+|++++++|++.+|+.+|+|+|||+||||||++++++|+++++|+|..+.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 12347899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccCCCcccCCcchhhHHHHHHHhHHHHHHHHHHHHhhhcCCc-hhhhHHHHHHHHHHHHHHHhhhccCCCc----hhh
Q 004285 564 FKTHHYDTCKNGRLYRELAYVISFLPYYWRAMQCARRWFDEYDT-NHLANMGKYVSAMVAAGARLTYTRQSNY----LWF 638 (763)
Q Consensus 564 ~~~~~~~~C~~~~~~~~~~~~~~~lP~~~R~~QClrry~dt~~~-~hl~Na~KY~~~~~~~~~~~~~~~~~~~----~w~ 638 (763)
+. ..++.|++.+.+ ..++++++|++||++||+|||+||++. +||+||+||+++++++.+...++...+. .+.
T Consensus 162 ~~-~~~~~c~~~~~~--~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~ 238 (345)
T PF03124_consen 162 FT-SPSNQCGSSSWY--IDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLF 238 (345)
T ss_pred cc-CCCCcCccccHh--HHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHH
Confidence 54 567889987764 448999999999999999999999987 9999999999999987665444433322 367
Q ss_pred HHHHHHHHhhhHhhhhhhhhhhccCCCCC--CCCCcccccccccCCchhhhhHhhhhHHhHHHHHhhhhcccc-ccchhh
Q 004285 639 GIVLVTSVVATIYQLYWDFVKDWGFLNPN--SRNPWLRDDLILRNKSIYYISIALNVVLRIAWVETVMRFHVT-TVQWRM 715 (763)
Q Consensus 639 ~~~i~~~~i~s~Ys~~WDv~~DWgL~~~~--~~~~~LR~~l~y~~~~~YY~aiv~n~ilRf~W~~~l~~~~~~-~~~~~~ 715 (763)
.+|++++++||+||++|||+|||||++++ +++++||++++|++|++||+||+.|+++||+|++++++.+.. ..+++.
T Consensus 239 ~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~ 318 (345)
T PF03124_consen 239 ILWIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHIDNSEI 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhhhHHH
Confidence 88999999999999999999999999987 789999999999999999999999999999999999766554 336788
Q ss_pred HHHHHHHHHHHhhhhheeeeehhhhhh
Q 004285 716 LDFFMASLEVIRRGHWNFYRLENEHLS 742 (763)
Q Consensus 716 ~~~~~~~lEi~RR~iWnffRvEnEhi~ 742 (763)
+.++++++||+||++||||||||||+|
T Consensus 319 ~~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 319 FIFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred HHHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 999999999999999999999999986
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-64 Score=520.47 Aligned_cols=367 Identities=23% Similarity=0.369 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCchhhh-hhhhhhHHHHHHHHHHHHHHHHHHHhhHhhcCCCeeeEeeecCCC
Q 004285 370 FVGLFTGCFVSLFCVYAILAHLSGIFSANTEAAY-METVYPVFSVFALLCLHLFMYGCNLFMWKSTRINYNFIFEFSPNT 448 (763)
Q Consensus 370 ~~Gl~~G~~~~L~~~~~i~~~~~~~~~~~~~~~~-~~~~~p~~~~~~l~~l~~~l~g~n~~iw~~~~INY~~Ife~~~~~ 448 (763)
++|+-.|.+++|.+... ++++..+...+ ...++|+|.++.+..+..+++++++|+|+|.+|||++||+++..+
T Consensus 4 vv~~~~g~~l~l~~~i~------~l~~~~~~~~~~~~ill~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~ 77 (384)
T COG5409 4 VVGLEKGVSLSLGLYIQ------NLLNVGEPQSFIVLILLALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLS 77 (384)
T ss_pred eeeeeccccccHHHHHH------HheeCCchHHHHHHHHHHHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhh
Confidence 35666676666543221 11222222233 245678898899999999999999999999999999999987643
Q ss_pred C----CchhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcchhhhhHHHHHHHHHHHHhcccccchhhHHHHHHHhhHh
Q 004285 449 A----LKYRDAFLLCTTFMTAVVAAMVVHLLLRAS-GFSPSKIDAIPGILLLISICLLICPFDIFYRPTRYCFLRIIRNI 523 (763)
Q Consensus 449 ~----l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~P~~~~~~~~~~l~~P~~i~~~~~R~~~~~~l~r~ 523 (763)
. .+.+..-. +.........++.+++.... .+.......+|++++++...++++|+++.++.+|+|++.++.|+
T Consensus 78 ~~a~~~~~dfh~~--~i~~~~~~~slfiFl~~v~g~~~~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv 155 (384)
T COG5409 78 STARNFNLDFHRI--IIPFHFFTTSLFIFLNAVEGLKFILLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRV 155 (384)
T ss_pred hhhcccchhhHHH--hhhHHHHHHHHHHHHHHhhccccceehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHH
Confidence 2 33332111 11111111122222222221 11123355789999999999999999999999999999999999
Q ss_pred hccCceeeecchhhhhhhhhcHHHhhhhhhhhHhhhhcCCccccCCCcccCCcchhhHHHHHHHhHHHHHHHHHHHHhhh
Q 004285 524 ICSPFYKVLMVDFFMADQLTSQIPLLRHLESTACYFLAGSFKTHHYDTCKNGRLYRELAYVISFLPYYWRAMQCARRWFD 603 (763)
Q Consensus 524 ~~~pf~~V~F~dfflaD~ltSl~~~l~D~~~~~C~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~lP~~~R~~QClrry~d 603 (763)
+.+|+..|+|.||++||++||++++++|++.+.|+|..- + +.| -|+++.. .+.++.+++|.++|++||+|||+|
T Consensus 156 ~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~-~--~~p-Lc~sshs--~~~g~~~~lP~ivR~lQCLRry~d 229 (384)
T COG5409 156 FLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLL-F--REP-LCKSSHS--DLSGLAALLPVIVRFLQCLRRYRD 229 (384)
T ss_pred HHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhh-c--ccc-ccccCCc--chHhHHHhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999642 2 233 5877665 467889999999999999999999
Q ss_pred cC-CchhhhHHHHHHHHHHHHHHHhhhccCC-CchhhHHHHHHHHhhhHhhhhhhhhhhccCCCCCCCC-Cccccccccc
Q 004285 604 EY-DTNHLANMGKYVSAMVAAGARLTYTRQS-NYLWFGIVLVTSVVATIYQLYWDFVKDWGFLNPNSRN-PWLRDDLILR 680 (763)
Q Consensus 604 t~-~~~hl~Na~KY~~~~~~~~~~~~~~~~~-~~~w~~~~i~~~~i~s~Ys~~WDv~~DWgL~~~~~~~-~~LR~~l~y~ 680 (763)
++ .+|||+||+||++++++..+...|+... +...++.+++++.+||+||+.|||.|||++..+.+.+ +-+|++++++
T Consensus 230 s~~~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~l~ 309 (384)
T COG5409 230 SLHEFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTLLK 309 (384)
T ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHHHHHHHHHHHHhHHhheeeeecccccchhccccchhHHH
Confidence 96 6999999999999999987766666544 4455667888999999999999999999998877655 5578887664
Q ss_pred CCchhhhhHhhhhHHhHHHHHhhhhccccccchhhHHHHHHHHHHHhhhhheeeeehhhhhhcccCceeccccC
Q 004285 681 NKSIYYISIALNVVLRIAWVETVMRFHVTTVQWRMLDFFMASLEVIRRGHWNFYRLENEHLSNVGKFRAVKAVP 754 (763)
Q Consensus 681 ~~~~YY~aiv~n~ilRf~W~~~l~~~~~~~~~~~~~~~~~~~lEi~RR~iWnffRvEnEhi~N~~~fra~~~ip 754 (763)
||+||++|+++||+|+++..++++.....+...|+++++||+|||+|++||||+||.+|+..+|++++.|
T Consensus 310 ----y~~a~~inFllR~~Wi~~~~~~~~~~~~~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n~~~~~~~~~~~ 379 (384)
T COG5409 310 ----YHIAMIINFLLRFSWIVYYLPPNHIQHSADIFIFIMQLLEILRRFVWVFFRVEAEHSINFASFRAAGELK 379 (384)
T ss_pred ----HHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHhheeeEEEeehHHHhhHHHhhhcccCC
Confidence 9999999999999999998777654334455559999999999999999999999999999999999998
No 4
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=3.4e-32 Score=287.78 Aligned_cols=272 Identities=30% Similarity=0.378 Sum_probs=142.1
Q ss_pred CcchHHHhhccchhHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCccccccccccccccccCchhhhHHH
Q 004285 2 VKFSKELEAQLIPEWKDAFVNYWQLKKHIKKIKLSKMQQKQHHHHRDFNHNNGVFGLSICDPVRFLASKFSRDNEAENII 81 (763)
Q Consensus 2 MKFgk~l~~~~vPEW~~~Yi~Yk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (763)
|||||+|+.++||||+++||||+.|||+||+++.............+. ..... + ..+.+. . +........+
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~-~---~~~~~~~~~~ 71 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSS--ISISS--S-SSSSSR-S---SSNSFESTSP 71 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccch--hhhhh--h-hhcccc-c---cccccccccc
Confidence 999999999999999999999999999999998765421100000000 00000 0 000000 0 0000000000
Q ss_pred HHhhhccccCCCchhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004285 82 QVKRKVMEEGDDHEVYETELAQLFSEEDEVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELKQILIDRR 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~~~~~~~~ 161 (763)
........ ........ ...+.+..|+.+|+.||+||+.||.+|+.|+.++++.|++|+..+..++.......
T Consensus 72 --~~~~~~~~-~~~~~~~~-----~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~ 143 (275)
T PF03105_consen 72 --SSSNTSPS-SSNSEQNE-----DNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKY 143 (275)
T ss_pred --cccccccc-ccccchhh-----hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 00000000 00000000 11146889999999999999999999999999999999999999987654322221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc--ccchhHHHHhhhcCccccccccchhhcccCCCCcccccCCCCCCCccchhhhhhh
Q 004285 162 RKPSGGIIPRSWTPCPRNSDISA--TETDDVIAALERNGVSFINAASSWAKTKKGKPKVAMRIDIPAETPARTISAVTSM 239 (763)
Q Consensus 162 ~~~~~~~~~~~~s~~~~~~~~s~--~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~s~~ 239 (763)
..+...... .+.....+..+. .......+.....+ .. + . ...... ....+...... .
T Consensus 144 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~-~-----~~~~~~-----~~~~~~~~~~~-~-- 202 (275)
T PF03105_consen 144 NWNQSSQLS--SSSNIFSSSSSASAGSSNSSSASRRSQR----FS-S-E-----SSKQSS-----NSESDAESDNN-R-- 202 (275)
T ss_pred ccccchhhc--cccccccCccccccCCcccccccccccc----ch-h-h-----hhhccC-----CCCcccccccc-c--
Confidence 111000000 000000000000 00000000000000 00 0 0 000000 00000000000 0
Q ss_pred hhhhhccCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCcccHHHHHhc
Q 004285 240 LWEDLVNNPKKESGTGNFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMVAFAKILKKFDKVSNQKASASYLQVV 318 (763)
Q Consensus 240 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~a~~e~y~~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v 318 (763)
.+..... .... .+...+.+++..|++++.|+|++|.+|++|++||+|||+||||||||+++++.+..||+.|
T Consensus 203 --~~~~~~~----~~~~-~~~~~~~~~~~~l~~~~~e~y~~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 203 --GDRSSDK----PFLS-SSQKSLKKARKQLKKAFIELYRELELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred --ccccccc----cccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 0000000 0011 2334577889999999999999999999999999999999999999999999999999864
No 5
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.4e-30 Score=267.48 Aligned_cols=177 Identities=31% Similarity=0.477 Sum_probs=148.6
Q ss_pred CcchHHHhhccchhHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCccccccccccccccccCchhhhHHH
Q 004285 2 VKFSKELEAQLIPEWKDAFVNYWQLKKHIKKIKLSKMQQKQHHHHRDFNHNNGVFGLSICDPVRFLASKFSRDNEAENII 81 (763)
Q Consensus 2 MKFgk~l~~~~vPEW~~~Yi~Yk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (763)
|||||+|++..+|||+++||||+.|||+||+...+. + +.+
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~-------~---------~~~------------------------ 40 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQT-------A---------DSS------------------------ 40 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhcccc-------c---------cCC------------------------
Confidence 999999999999999999999999999999976421 1 000
Q ss_pred HHhhhccccCCCchhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004285 82 QVKRKVMEEGDDHEVYETELAQLFSEEDEVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELKQILIDRR 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~~~~~~~~ 161 (763)
. +...|..|++.||+|||||+.||.+||.|+..|+++|++++++ .. .
T Consensus 41 ------------~------------~~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~--~~-------~ 87 (310)
T KOG1161|consen 41 ------------P------------DSRDESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA--LS-------L 87 (310)
T ss_pred ------------c------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc-------c
Confidence 0 0014788999999999999999999999999999888887764 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccchhHHHHhhhcCccccccccchhhcccCCCCcccccCCCCCCCccchhhhhhhhh
Q 004285 162 RKPSGGIIPRSWTPCPRNSDISATETDDVIAALERNGVSFINAASSWAKTKKGKPKVAMRIDIPAETPARTISAVTSMLW 241 (763)
Q Consensus 162 ~~~~~~~~~~~~s~~~~~~~~s~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~s~~~~ 241 (763)
+ .|+ .
T Consensus 88 -----------------------------------------~------------------------~~~----~------ 92 (310)
T KOG1161|consen 88 -----------------------------------------E------------------------PPS----A------ 92 (310)
T ss_pred -----------------------------------------C------------------------Ccc----h------
Confidence 0 000 0
Q ss_pred hhhccCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCcccHHHHHhcccC
Q 004285 242 EDLVNNPKKESGTGNFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMVAFAKILKKFDKVSNQKASASYLQVVKRS 321 (763)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~a~~e~y~~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v~~~ 321 (763)
..-..|++++.++..++..|.+|++||+|||+||||||||.+|...+..|..++..+
T Consensus 93 -----------------------~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~ 149 (310)
T KOG1161|consen 93 -----------------------EEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQ 149 (310)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhC
Confidence 011678999999999999999999999999999999999999988888899999999
Q ss_pred CccChhHHHHHHHHHHHHHHHHhcCCcH
Q 004285 322 HFISSDKVVRLMDEVESIFTKHFANNDR 349 (763)
Q Consensus 322 ~F~~~~~l~~li~~ie~ly~~~f~~gd~ 349 (763)
||.+.+.+.+++.+++.+|+.+++.++.
T Consensus 150 Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~ 177 (310)
T KOG1161|consen 150 PFFTTEQLFRLVYEISILLDLLRPSNRN 177 (310)
T ss_pred CCchhhhHHHHHHHHHHHHHHhcccccc
Confidence 9988899999999999999999887654
No 6
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.4e-22 Score=214.66 Aligned_cols=169 Identities=29% Similarity=0.411 Sum_probs=138.4
Q ss_pred CcchHHHhhccchhHHHhcCCHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCccccccccccccccccCchhhhHHH
Q 004285 2 VKFSKELEAQLIPEWKDAFVNYWQLKKHIKKIKLSKMQQKQHHHHRDFNHNNGVFGLSICDPVRFLASKFSRDNEAENII 81 (763)
Q Consensus 2 MKFgk~l~~~~vPEW~~~Yi~Yk~LKk~Ik~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (763)
|+||+.|..+..|+|+..||||..|||++|+-.+ + +.|+
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~~--------~---------~~w~------------------------ 39 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESEE--------E---------GSWS------------------------ 39 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhccc--------c---------CCCc------------------------
Confidence 9999999999999999999999999999998211 1 1121
Q ss_pred HHhhhccccCCCchhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004285 82 QVKRKVMEEGDDHEVYETELAQLFSEEDEVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELKQILIDRR 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~~~~~~~~ 161 (763)
+++|.+|.+.||+||+||..|..+|.+|+.+|++.|++|..+-+.. .
T Consensus 40 --------------------------e~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~---~---- 86 (509)
T COG5036 40 --------------------------ESDESDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQE---L---- 86 (509)
T ss_pred --------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhc---c----
Confidence 0357889999999999999999999999999999999888732210 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccchhHHHHhhhcCccccccccchhhcccCCCCcccccCCCCCCCccchhhhhhhhh
Q 004285 162 RKPSGGIIPRSWTPCPRNSDISATETDDVIAALERNGVSFINAASSWAKTKKGKPKVAMRIDIPAETPARTISAVTSMLW 241 (763)
Q Consensus 162 ~~~~~~~~~~~~s~~~~~~~~s~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~s~~~~ 241 (763)
. +
T Consensus 87 -----------------------------------------d----------s--------------------------- 88 (509)
T COG5036 87 -----------------------------------------D----------S--------------------------- 88 (509)
T ss_pred -----------------------------------------c----------C---------------------------
Confidence 0 0
Q ss_pred hhhccCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCcccHHHHHhcccC
Q 004285 242 EDLVNNPKKESGTGNFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMVAFAKILKKFDKVSNQKASASYLQVVKRS 321 (763)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~a~~e~y~~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v~~~ 321 (763)
+++ .+.+.|-..+.+.|.+|.+||+|||.||+|||||.+|..+++.|..+++..
T Consensus 89 ----~~~----------------------~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrLk~~ 142 (509)
T COG5036 89 ----DNF----------------------PKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRLKAK 142 (509)
T ss_pred ----Ccc----------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHhccC
Confidence 000 012233334889999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHHHHHhcCCcH
Q 004285 322 HFISSDKVVRLMDEVESIFTKHFANNDR 349 (763)
Q Consensus 322 ~F~~~~~l~~li~~ie~ly~~~f~~gd~ 349 (763)
|| .+++++.|+.++..||....++++.
T Consensus 143 p~-~se~yd~Ll~kis~LY~~lR~~~~~ 169 (509)
T COG5036 143 PF-FSEQYDPLLYKISSLYNILRSSLSP 169 (509)
T ss_pred Cc-chhhhcHHHHHHHHHHHHHHhcCCc
Confidence 99 4579999999999999999988873
No 7
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.1e-22 Score=206.35 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCcccHHHHHhc
Q 004285 264 QCAEKMIRGAFVELYRGLGLLKTYSSLNMVAFAKILKKFDKVSNQKASASYLQVV 318 (763)
Q Consensus 264 ~~~~~~Lk~a~~e~y~~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v 318 (763)
.+++..|+++++++|..|+.|++|++||+|||+||+|||||.++++....||++.
T Consensus 237 ~q~R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~ 291 (296)
T COG5408 237 YQKRSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRS 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 4578899999999999999999999999999999999999999999999999864
No 8
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=51.72 E-value=1.8e+02 Score=30.94 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHH-----HhhHhhcCCCeeeEeeecCCCCCch
Q 004285 414 FALLCLHLFMYGCN-----LFMWKSTRINYNFIFEFSPNTALKY 452 (763)
Q Consensus 414 ~~l~~l~~~l~g~n-----~~iw~~~~INY~~Ife~~~~~~l~~ 452 (763)
++++++..+.|++. -.+++.+|-.|+-|+....+-+++.
T Consensus 152 ~rlilfl~YI~~Is~~~~IkRVFQYHGAEHk~I~~YE~~leLTp 195 (318)
T COG3872 152 FRLILFLGYIWIISFTPDIKRVFQYHGAEHKVINCYENGLELTP 195 (318)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCccceeEeeeccCCcCCh
Confidence 34444445555544 3599999999999998876655554
No 9
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.86 E-value=1.3e+02 Score=26.39 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 115 FERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLEL 153 (763)
Q Consensus 115 ~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~ 153 (763)
++.+++|++|+. .|-+|+..|+..|+.|..+..+.
T Consensus 3 leKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 3 LEKIRAEIEKTK----EKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999987 89999999999999999888764
No 10
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=28.68 E-value=42 Score=39.60 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhccCCCcc--cHHHHHh
Q 004285 280 GLGLLKTYSSLNMVAFAKILKKFDKVSNQKA--SASYLQV 317 (763)
Q Consensus 280 ~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~~--~~~y~~~ 317 (763)
.+..+++|..+|++++.|+.||.||..+.+. +..|...
T Consensus 10 ~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~e~~c~y~~~ 49 (586)
T KOG1281|consen 10 TLLQYRSLLVLNRTPLLLLPKKLDKLLHSSEEARCAYVIL 49 (586)
T ss_pred HHHHhhhhheeehhhhhhcchhhhhhcCCcHHHHHHHHHH
Confidence 8889999999999999999999999998875 3335543
No 11
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=28.41 E-value=6.8e+02 Score=27.93 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=18.4
Q ss_pred HHHHHhhhhccCCCcccHHHHHhc-ccCCccChhHHHH
Q 004285 295 FAKILKKFDKVSNQKASASYLQVV-KRSHFISSDKVVR 331 (763)
Q Consensus 295 F~KIlKK~DK~~~~~~~~~y~~~v-~~~~F~~~~~l~~ 331 (763)
+..+-++|. -|......+++.+ +...|.--+-+..
T Consensus 136 ~~~~~~q~~--~g~~d~~~l~~~v~~~~~~~v~~lis~ 171 (348)
T PF08733_consen 136 TKVLEEQYY--NGYQDAIELQDLVNNSLEYRVIDLISN 171 (348)
T ss_pred HHHHHHHHH--hCccCHHHHHHHHhCCcceeeHHHHHH
Confidence 444455555 4666666677765 4444544333333
No 12
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=28.03 E-value=60 Score=26.89 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHhhHhhccCce
Q 004285 494 LLISICLLICPFDIFYRPTRYCFLRIIRNIICSPFY 529 (763)
Q Consensus 494 ~~~~~~~l~~P~~i~~~~~R~~~~~~l~r~~~~pf~ 529 (763)
++++.++++.|.....+....+..+.+.+.+++|=|
T Consensus 9 ii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~PRy 44 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRWLPRIRRTLRRRLFPPRY 44 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCccc
Confidence 345556677788777777777888888888877754
No 13
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=22.45 E-value=4.3e+02 Score=25.85 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 004285 372 GLFTGCFVSL 381 (763)
Q Consensus 372 Gl~~G~~~~L 381 (763)
|+|+|+.++-
T Consensus 37 ~L~~~M~~~y 46 (155)
T PF10777_consen 37 YLCLAMYAAY 46 (155)
T ss_pred HHHHHHHHHH
Confidence 6666655433
No 14
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.80 E-value=3.5e+02 Score=33.81 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004285 109 DEVRAFFERLDRELNKVNQF-YRTKESEFLERGEILNKQL 147 (763)
Q Consensus 109 ~~e~~F~~~Ld~EL~KV~~F-y~~ke~e~~~r~~~L~~ql 147 (763)
++-..|...-..|+++|-.- |..-++.+.+.++.....+
T Consensus 183 ~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 183 DDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 44567777777777777666 6666666666655544433
No 15
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=21.41 E-value=4e+02 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004285 369 FFVGLFTGCFVSLFCVYAILAHL 391 (763)
Q Consensus 369 F~~Gl~~G~~~~L~~~~~i~~~~ 391 (763)
++.|++.|..+ |+++-+|.+++
T Consensus 10 ~~S~vli~Gii-LL~~aCIfAfi 31 (92)
T PF05767_consen 10 YFSGVLIGGII-LLIAACIFAFI 31 (92)
T ss_pred ccchHHHHHHH-HHHHHHHHHhh
Confidence 45566665444 33334455554
No 16
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.94 E-value=9.8e+02 Score=25.09 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccCCCc
Q 004285 263 IQCAEKMIRGAFVELYRGLGLLKTYSSLNMVAFAKILKKFDKVSNQK 309 (763)
Q Consensus 263 ~~~~~~~Lk~a~~e~y~~l~~Lk~y~~LN~tgF~KIlKK~DK~~~~~ 309 (763)
.++.+..|+.+-.+++..-..+ ..+|.++||+.=|.+.++
T Consensus 73 ~~~I~ssL~eTtkdf~~~~~k~-------~~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 73 LKEIKSSLEETTKDFIDKTEKV-------HNDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhchH
Confidence 3444456666666666553333 458888888887665443
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.72 E-value=9e+02 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=5.5
Q ss_pred CcHHHHHHhcC
Q 004285 347 NDRKKAMKFLR 357 (763)
Q Consensus 347 gd~~~A~~~Lr 357 (763)
|++++.-+++-
T Consensus 53 G~P~~~a~eli 63 (206)
T PF06570_consen 53 GDPKEYADELI 63 (206)
T ss_pred CCHHHHHHHHh
Confidence 46655444443
Done!