Query 004285
Match_columns 763
No_of_seqs 298 out of 1044
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_E Probable protein brick1 45.0 1.3E+02 0.0044 24.8 8.7 49 110-158 17-65 (75)
2 3pp5_A BRK1, protein brick1; t 42.8 1.3E+02 0.0046 24.5 8.4 45 110-154 17-61 (73)
3 2akf_A Coronin-1A; coiled coil 40.0 69 0.0023 21.4 5.0 28 117-148 3-30 (32)
4 2l5g_B Putative uncharacterize 29.2 90 0.0031 22.7 4.6 27 114-144 10-36 (42)
5 2l2r_A Antimicrobial peptide e 28.3 17 0.0006 25.1 0.8 10 595-604 9-18 (37)
6 3vem_A Helicase protein MOM1; 17.7 3.9E+02 0.013 23.7 7.4 44 109-152 57-100 (115)
7 2p2u_A HOST-nuclease inhibitor 14.8 2.7E+02 0.0093 26.3 6.3 44 111-154 32-75 (171)
8 2pnv_A Small conductance calci 14.5 2.1E+02 0.0072 20.9 4.1 22 131-152 16-37 (43)
9 3twe_A Alpha4H; unknown functi 14.3 2E+02 0.0067 18.2 3.3 18 134-151 4-21 (27)
10 4hkr_A Calcium release-activat 12.4 9.6E+02 0.033 23.4 11.1 16 368-383 30-45 (214)
No 1
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=45.01 E-value=1.3e+02 Score=24.77 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004285 110 EVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELKQILI 158 (763)
Q Consensus 110 ~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~~~~~ 158 (763)
..++|++.+..-+.|+.+|-+.=+.-+..|+..|+.++..+...-..+.
T Consensus 17 ~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLE 65 (75)
T 3p8c_E 17 ANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999988888888888888888888776544443
No 2
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=42.79 E-value=1.3e+02 Score=24.55 Aligned_cols=45 Identities=27% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 110 EVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELK 154 (763)
Q Consensus 110 ~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~ 154 (763)
...+|++.+...+.|+..|-+.=+.-+..|+..|...++.+...-
T Consensus 17 ~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L 61 (73)
T 3pp5_A 17 EQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQV 61 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999988888888888888887777776543
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.97 E-value=69 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 117 RLDRELNKVNQFYRTKESEFLERGEILNKQLQ 148 (763)
Q Consensus 117 ~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~ 148 (763)
.|+.|+.|.+.-. .++.+|++.|++.++
T Consensus 3 rlee~~r~l~~iv----q~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIV----QKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5777888877654 456777777776654
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.22 E-value=90 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 114 FFERLDRELNKVNQFYRTKESEFLERGEILN 144 (763)
Q Consensus 114 F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~ 144 (763)
=+..+|+|++|+. +|-+++..|+.+|+
T Consensus 10 kI~kVdrEI~Kte----~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVE----QQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3567889998875 34455555544443
No 5
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=28.30 E-value=17 Score=25.09 Aligned_cols=10 Identities=60% Similarity=0.837 Sum_probs=8.8
Q ss_pred HHHHHHhhhc
Q 004285 595 MQCARRWFDE 604 (763)
Q Consensus 595 ~QClrry~dt 604 (763)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999986
No 6
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=17.66 E-value=3.9e+02 Score=23.68 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 109 DEVRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLE 152 (763)
Q Consensus 109 ~~e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~ 152 (763)
+-.......+++|+++|..=|..+..|+...+..-.+.++.+.+
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~ 100 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKN 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999999999998888888888754
No 7
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=14.78 E-value=2.7e+02 Score=26.33 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 111 VRAFFERLDRELNKVNQFYRTKESEFLERGEILNKQLQILLELK 154 (763)
Q Consensus 111 e~~F~~~Ld~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~ 154 (763)
...--..++.|+++|..-|..+...+..+++.|+..|..+.+.+
T Consensus 32 ~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 32 VGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566779999999999999999999999999999999998764
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=14.53 E-value=2.1e+02 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004285 131 TKESEFLERGEILNKQLQILLE 152 (763)
Q Consensus 131 ~ke~e~~~r~~~L~~ql~~l~~ 152 (763)
+...++.+|+..|+.+++.+.+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777766653
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=14.28 E-value=2e+02 Score=18.25 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004285 134 SEFLERGEILNKQLQILL 151 (763)
Q Consensus 134 ~e~~~r~~~L~~ql~~l~ 151 (763)
+|+.+++++|++.+..+.
T Consensus 4 delykeledlqerlrklr 21 (27)
T 3twe_A 4 DELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666665553
No 10
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=12.43 E-value=9.6e+02 Score=23.40 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 004285 368 TFFVGLFTGCFVSLFC 383 (763)
Q Consensus 368 ~F~~Gl~~G~~~~L~~ 383 (763)
+..++++.|+.++.++
T Consensus 30 S~lSALLaGFAMVAmV 45 (214)
T 4hkr_A 30 SKTSALLSGFAMVAMV 45 (214)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccceeeEE
Confidence 4568888887765543
Done!