Query 004285
Match_columns 763
No_of_seqs 298 out of 1044
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 20:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1khba1 c.91.1.1 (A:260-622) C 11.2 94 0.0068 30.7 4.5 34 116-149 324-362 (363)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 6.5 2E+02 0.015 16.8 2.8 17 419-435 10-26 (27)
3 d1q90n_ f.23.27.1 (N:) PetN su 5.5 2.4E+02 0.018 17.1 2.8 17 419-435 14-30 (31)
4 d2nsza1 a.118.1.14 (A:322-450) 5.0 2.2E+02 0.016 23.3 3.3 30 330-359 4-33 (129)
5 d3pvia_ c.52.1.6 (A:) Restrict 4.9 1.6E+02 0.012 24.5 2.3 35 591-625 8-47 (156)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 4.9 4.5E+02 0.032 20.9 5.5 24 12-35 23-46 (133)
7 d1dq3a2 d.50.3.1 (A:336-414) P 4.8 57 0.0041 24.1 -0.7 17 4-20 3-19 (79)
8 d1tuba2 d.79.2.1 (A:246-440) T 4.3 1.8E+02 0.013 25.5 2.5 30 295-324 143-174 (195)
9 d1r8ea1 a.6.1.3 (A:3-120) Tran 4.0 4.7E+02 0.035 20.2 4.8 35 120-154 73-107 (118)
10 d2q66a1 a.160.1.1 (A:202-351) 4.0 1.7E+02 0.013 25.0 1.9 15 370-384 26-40 (150)
No 1
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.18 E-value=94 Score=30.68 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 004285 116 ERLDRELNKVNQFYRTKE-----SEFLERGEILNKQLQI 149 (763)
Q Consensus 116 ~~Ld~EL~KV~~Fy~~ke-----~e~~~r~~~L~~ql~~ 149 (763)
+...+|++.+.++|.+|. .|+.++++.|+++|++
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 457789999999997765 3788888777777764
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.53 E-value=2e+02 Score=16.79 Aligned_cols=17 Identities=18% Similarity=0.593 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhHhhcC
Q 004285 419 LHLFMYGCNLFMWKSTR 435 (763)
Q Consensus 419 l~~~l~g~n~~iw~~~~ 435 (763)
|..|-|++.+-+|-|.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 33556777778888876
No 3
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.51 E-value=2.4e+02 Score=17.11 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhHhhcC
Q 004285 419 LHLFMYGCNLFMWKSTR 435 (763)
Q Consensus 419 l~~~l~g~n~~iw~~~~ 435 (763)
...|.|++.+-+|-|.|
T Consensus 14 ~atfsfslslvvwgrsg 30 (31)
T d1q90n_ 14 CVMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHhheeeEEEEEEeccC
Confidence 34566778888898876
No 4
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.01 E-value=2.2e+02 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHhcCCc
Q 004285 330 VRLMDEVESIFTKHFANNDRKKAMKFLRPQ 359 (763)
Q Consensus 330 ~~li~~ie~ly~~~f~~gd~~~A~~~Lr~~ 359 (763)
+.+.++++.+...+|.+||.++|..-++..
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL 33 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 367788999999999999999999888764
No 5
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=4.91 E-value=1.6e+02 Score=24.47 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcC-----CchhhhHHHHHHHHHHHHHH
Q 004285 591 YWRAMQCARRWFDEY-----DTNHLANMGKYVSAMVAAGA 625 (763)
Q Consensus 591 ~~R~~QClrry~dt~-----~~~hl~Na~KY~~~~~~~~~ 625 (763)
+.|++-|+|+|.+-. +-.-.-|+|||.--+++.++
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvlmi~gL 47 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLLITGL 47 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHHHHhcc
Confidence 468888999998751 33445799999877766543
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.88 E-value=4.5e+02 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=16.8
Q ss_pred cchhHHHhcCCHHHHHHHHHHHhh
Q 004285 12 LIPEWKDAFVNYWQLKKHIKKIKL 35 (763)
Q Consensus 12 ~vPEW~~~Yi~Yk~LKk~Ik~i~~ 35 (763)
++..|...--+|..++..|+.++.
T Consensus 23 ~i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 23 QMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666667777777887777764
No 7
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.78 E-value=57 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=13.5
Q ss_pred chHHHhhccchhHHHhc
Q 004285 4 FSKELEAQLIPEWKDAF 20 (763)
Q Consensus 4 Fgk~l~~~~vPEW~~~Y 20 (763)
||-.|.+++..||++.|
T Consensus 3 fgl~lnf~afk~was~y 19 (79)
T d1dq3a2 3 FGLPLNFNAFKEWASEY 19 (79)
T ss_dssp CEECCCHHHHHHHHHTT
T ss_pred cCccccHHHHHHHHHHh
Confidence 77777888888888876
No 8
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.32 E-value=1.8e+02 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=19.5
Q ss_pred HHHHHhhhhccCCCc-ccHHHHH-hcccCCcc
Q 004285 295 FAKILKKFDKVSNQK-ASASYLQ-VVKRSHFI 324 (763)
Q Consensus 295 F~KIlKK~DK~~~~~-~~~~y~~-~v~~~~F~ 324 (763)
|.+|++||||..... -.+.|.+ .++..-|.
T Consensus 143 f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF~ 174 (195)
T d1tuba2 143 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 174 (195)
T ss_dssp HHHHHHHHHHHTTTTCCTTTGGGGSCCSSSSH
T ss_pred HHHHHHHHHHHHhhchHHHHhcccCCcHHHHH
Confidence 677899999987543 3344654 36666665
No 9
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=4.03 E-value=4.7e+02 Score=20.23 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004285 120 RELNKVNQFYRTKESEFLERGEILNKQLQILLELK 154 (763)
Q Consensus 120 ~EL~KV~~Fy~~ke~e~~~r~~~L~~ql~~l~~~~ 154 (763)
...+.+.....++..++.++++.|+...+.+...+
T Consensus 73 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 107 (118)
T d1r8ea1 73 LEMEELFAFYTEQERQIREKLDFLSALEQTISLVK 107 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667777777766665555554433
No 10
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.01 E-value=1.7e+02 Score=24.96 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q 004285 370 FVGLFTGCFVSLFCV 384 (763)
Q Consensus 370 ~~Gl~~G~~~~L~~~ 384 (763)
..|++.|+..+++++
T Consensus 26 ~~GylGGI~waILvA 40 (150)
T d2q66a1 26 IFGFPGGVAWAMLVA 40 (150)
T ss_dssp GGTSCCHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 478888988776553
Done!