BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004286
(763 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A +G E+V+ L+ + + D+ G TPLH+AA G++ + K +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 104 --ATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
A AD + ++ TP LAAR+GH + L A V+ ++ KNG T LH
Sbjct: 55 LEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLH 106
Query: 162 YA 163
A
Sbjct: 107 LA 108
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
++G T LH+A +G E+V+ L+ + + D+ G TPLH+AA G++ + K
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 103 I--ATADPRLIGERNHENETPFFLAARHGH 130
+ A AD + ++ TP LAAR+GH
Sbjct: 87 LLEAGAD---VNAKDKNGRTPLHLAARNGH 113
Score = 35.8 bits (81), Expect = 0.098, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA+NG E+V+ +L+ A D+N++ KN + LA N V +LLL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D G + LHLAA G
Sbjct: 59 ---ADVNAKDKNGRTPLHLAARNG 79
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
++G T LH+A +G E+V+ L+ + + D+ G TPLH+AA G++ + K
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 103 IATA 106
+ A
Sbjct: 120 LLEA 123
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 24/111 (21%)
Query: 414 DTSLTDHNVVTDTHKLSRNNG--------KNSEDRNEGGKTGSTIPDTVKRETPILIAAK 465
D + D N T H +RN + D N K G TP+ +AA+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---------RTPLHLAAR 77
Query: 466 NGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTA 513
NG E+V+ +L+ A D+N++ KN + LA N V +LLL+
Sbjct: 78 NGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 1 MATGIDIDQLKKG----LFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVS 54
MA G D++ K L +A +G EV+ G D + + G T LH+A
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAR 77
Query: 55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER 114
+G EIVE L++ + + D+ G TPLH+AA G++ + + + A + +
Sbjct: 78 EGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQ 130
Query: 115 NHENETPFFLAARHGHKD 132
+ +TPF LA R GH+D
Sbjct: 131 DKFGKTPFDLAIREGHED 148
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D + + G T LH+A +G EIVE L++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR 127
+ + D+ G TPLH+AA G++ + + + A + ++ + TP LAAR
Sbjct: 58 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 110
Query: 128 HGH 130
GH
Sbjct: 111 EGH 113
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA+ G EIVE +LK A D+N++ K+ + LA + ++LLK
Sbjct: 37 TPLHLAAREGHLEIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG- 91
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D G + LHLAA G
Sbjct: 92 ---ADVNAKDKDGYTPLHLAAREG 112
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D + + G T LH+A +G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLA 125
+ + D+ G TPLH+AA G++ + + + A AD + ++ + TP LA
Sbjct: 70 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLA 120
Query: 126 ARHGH 130
AR GH
Sbjct: 121 AREGH 125
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 1 MATGIDIDQLKKG----LFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVS 54
MA G D++ K L +A +G EV+ G D + + G T LH+A
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAR 89
Query: 55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI--ATADPRLIG 112
+G EIVE L++ + + D+ G TPLH+AA G++ + + + A AD +
Sbjct: 90 EGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VN 140
Query: 113 ERNHENETPFFLAARHGHKD 132
++ +T F ++ +G++D
Sbjct: 141 AQDKFGKTAFDISIDNGNED 160
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA+ G EIVE +LK A D+N++ K+ + LA + ++LLK
Sbjct: 49 TPLHLAAREGHLEIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG- 103
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D G + LHLAA G
Sbjct: 104 ---ADVNAKDKDGYTPLHLAAREG 124
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D + + G T LH+A +G EIVE L++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKD----KDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAAR 127
+ + D+ G TPLH+AA G++ + + + A + ++ + TP LAAR
Sbjct: 58 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAR 110
Query: 128 HGH 130
GH
Sbjct: 111 EGH 113
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 1 MATGIDIDQLKKG----LFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVS 54
MA G D++ K L +A +G EV+ G D + + G T LH+A
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAR 77
Query: 55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGER 114
+G EIVE L++ + + D+ G TPLH+AA G++ + + + A + +
Sbjct: 78 EGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQ 130
Query: 115 NHENETPFFLAARHGHKD 132
+ +TPF LA +G++D
Sbjct: 131 DKFGKTPFDLAIDNGNED 148
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA+ G EIVE +LK A D+N++ K+ + LA + ++LLK
Sbjct: 37 TPLHLAAREGHLEIVEVLLK----AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG- 91
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D G + LHLAA G
Sbjct: 92 ---ADVNAKDKDGYTPLHLAAREG 112
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEK---KNVMLLAVENRQRHVYQLLLKTA 513
TP+ +AA+ G EIVE +LK A D+N++ K LA++N + ++L K A
Sbjct: 103 TPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 20/123 (16%)
Query: 25 EVVENYGKDDRIHE-----ARITRS---GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKV 76
E EN G DR+ + A + S G T LH+A +G +E+V+ L+ Q
Sbjct: 10 EAAEN-GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLL------SQGAD 62
Query: 77 LKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAF 134
D G TPLH+AA G+ + K + + ADP ++ + +TP LAA +GHK+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV 119
Query: 135 LCL 137
L
Sbjct: 120 KLL 122
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G L A +G ++ V+DL+ + + D G TPLH+AA G+ + K + +
Sbjct: 5 GKRLIEAAENGNKDRVKDLL------ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLS 58
Query: 106 --ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA 163
ADP ++ + +TP LAA +GHK+ L L D ++ +G+T LH A
Sbjct: 59 QGADPNA---KDSDGKTPLHLAAENGHKEVVKLL--LSQGADP---NAKDSDGKTPLHLA 110
Query: 164 ISGYY 168
+
Sbjct: 111 AENGH 115
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A +G +E+V+ L+ Q D G TPLH+AA G+ + K +
Sbjct: 70 GKTPLHLAAENGHKEVVKLLL------SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ ADP + + TP LA HG+++ L
Sbjct: 124 SQGADPNT---SDSDGRTPLDLAREHGNEEVVKLL 155
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQE 517
TP+ +AA+NG E+V K+L S +S+ K + LA EN + V +LLL Q
Sbjct: 39 TPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS----QG 93
Query: 518 TVFRKVDDQGNSALHLAATLGDHK 541
D G + LHLAA G HK
Sbjct: 94 ADPNAKDSDGKTPLHLAAENG-HK 116
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 460 ILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQETV 519
++ AA+NG + V+ +L++ + +S+ K + LA EN + V +LLL Q
Sbjct: 8 LIEAAENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLS----QGAD 62
Query: 520 FRKVDDQGNSALHLAATLGDHK 541
D G + LHLAA G HK
Sbjct: 63 PNAKDSDGKTPLHLAAENG-HK 83
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
T +G T LHIA +G E V L+ E Q + K +G TPLH+AA G V + +
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLE--KEASQACMTK----KGFTPLHVAAKYGKVRVAE 163
Query: 102 CIATAD--PRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETI 159
+ D P G+ TP +A H + D L G +S NG T
Sbjct: 164 LLLERDAHPNAAGKN---GLTPLHVAVHHNNLDIVKLL-----LPRGGSPHSPAWNGYTP 215
Query: 160 LHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATKPNA 204
LH A + V++A ++ Y N + +GV+PLHL A + +A
Sbjct: 216 LHIA-AKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHA 258
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 89/232 (38%), Gaps = 34/232 (14%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LHIA Q E+ L++ V +G TPLH+AA G+ M +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVALL 264
Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
+ A+ L N TP L A+ GH L VD + + G T LH
Sbjct: 265 LSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-----ATTRMGYTPLH 316
Query: 162 YAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLLATK---------------PNAFR 206
A S Y + L + + ++ VN + G SPLH A + PN
Sbjct: 317 VA-SHYGNIKL-VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 207 SGSHLGLCTGIIYHCISV-DKLQEETSYDQHLFTTIKKQTNYPENYETCLNF 257
S L ISV D L+ T + + K + ++PE + L+
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDV 426
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATA 106
T LH+A G IV++L+ Q+ + + + TPLH+AA G+ + K +
Sbjct: 16 TPLHVASFMGHLPIVKNLL------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69
Query: 107 DPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKN-GETILHYAI- 164
+ + + +++TP AAR GH + L +++ N + G T LH A
Sbjct: 70 KAK-VNAKAKDDQTPLHCAARIGHTNMVKLL------LENNANPNLATTAGHTPLHIAAR 122
Query: 165 SGYYFVDLAFQIIHLYEKLVN--FVNERGVSPLHLLA 199
G+ LA L EK + + ++G +PLH+ A
Sbjct: 123 EGHVETVLA-----LLEKEASQACMTKKGFTPLHVAA 154
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+SG T LH+ +G + + L++ ++ G TPLH+A+ GN+ + K
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIK------HGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 103 IA--TADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ AD + + +P AA+ GH D L
Sbjct: 330 LLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLL 363
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D ++ G T LH+A + G EIVE L+R
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYD----HYGRTPLHMAAAVGHLEIVEVLLRN 57
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
+ + D G+TPLH+AA LG++ + + + AD + ++ TP +LA
Sbjct: 58 GADVNAV------DTNGTTPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLA 108
Query: 126 ARHGH 130
A GH
Sbjct: 109 AYWGH 113
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A +G E+V+ L+ + + D+ G TPLH+AA G++ + K +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 104 --ATADPRLIGERNHENETPFFLAARHGH 130
A AD + ++ TP LAAR+GH
Sbjct: 55 LEAGAD---VNAKDKNGRTPLHLAARNGH 80
Score = 35.8 bits (81), Expect = 0.093, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA+NG E+V+ +L+ A D+N++ KN + LA N V +LLL+
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D G + LHLAA G
Sbjct: 59 ---ADVNAKDKNGRTPLHLAARNG 79
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
++G T LH+A +G E+V+ L+ + + D+ G TPLH+AA G++ + K
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 103 IATA 106
+ A
Sbjct: 87 LLEA 90
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 25/113 (22%)
Query: 31 GKDDRIHEARITRSGG-----------TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI 79
G+DD E RI + G T LH+A S+G EIVE L++ + +
Sbjct: 25 GQDD---EVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD------VNA 75
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGH 130
D G TPLH+AA G++ + + + AD + +++ TP LAA++GH
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGH 125
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A + G EIVE L++ H + D G TPLH+AA G++ + + +
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLK--HGAD----VNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 133 LKHGAD---VNAQDKFGKTAFDISIDNGNED 160
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKK---NVMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA NG EIVE +LK+ D+N+ + LA + ++LLK
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGA----DVNASDLTGITPLHLAAATGHLEIVEVLLKHG- 103
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D+ G++ LHLAA G
Sbjct: 104 ---ADVNAYDNDGHTPLHLAAKYG 124
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 18 AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
A GK E+ E+ D + R + TALH A S G EIVE L+++ +++K
Sbjct: 14 AYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 69
Query: 75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
D+ G +PLHIAA G + K + + + N TP + A+++ H+ A
Sbjct: 70 ------DDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHL---YEKLVNFVNE 189
+ L + G N + + E T +H A + ++IH+ Y+ N +
Sbjct: 123 VMLL-------EGGANPDAKDHYEATAMHRAAAKGN-----LKMIHILLYYKASTNIQDT 170
Query: 190 RGVSPLHL 197
G +PLHL
Sbjct: 171 EGNTPLHL 178
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)
Query: 18 AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
A GK E+ E+ D + R + TALH A S G EIVE L+++ +++K
Sbjct: 15 AYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 70
Query: 75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
D+ G +PLHIAA G + K + + + N TP + A+++ H+ A
Sbjct: 71 ------DDAGWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIA 123
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHL---YEKLVNFVNE 189
+ L + G N + + E T +H A + ++IH+ Y+ N +
Sbjct: 124 VMLL-------EGGANPDAKDHYEATAMHRAAAKGN-----LKMIHILLYYKASTNIQDT 171
Query: 190 RGVSPLHL 197
G +PLHL
Sbjct: 172 EGNTPLHL 179
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
+IT G T LH+AV E+ + L+ + ++I D+ PLH AA +G++ +
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ + + ++ + TP F A GH DA + L
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH +VS EI L+ + + + + D+ G TP HIA +GN+ + K
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLS---KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 103 I 103
+
Sbjct: 91 L 91
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 36 IHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG 95
I++ R +SGGTALH+A + G E+++ L++ ++ + I D G TPLH AA G
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWG 243
Query: 96 NVSMCKCI 103
C+ +
Sbjct: 244 KEEACRIL 251
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
+IT G T LH+AV E+ + L+ + ++I D+ PLH AA +G++ +
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ + + ++ + TP F A GH DA + L
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH +VS EI L+ + + + + D+ G TP HIA +GN+ + K
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLS---KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 103 I 103
+
Sbjct: 91 L 91
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
+IT G T LH+AV E+ + L+ + ++I D+ PLH AA +G++ +
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLI------ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ + + ++ + TP F A GH DA + L
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH +VS EI L+ + + + + D+ G TP HIA +GN+ + K
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLS---KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 103 I 103
+
Sbjct: 91 L 91
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 18 AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
A GK +E+ E D + R + TALH A S G EIVE L+++ +++K
Sbjct: 14 AYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 69
Query: 75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
D+ G +PLHIAA G + K + + N TP + A+++ H+ A
Sbjct: 70 ------DDAGWSPLHIAASAGRDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV 192
+ L + G N + + + T +H A + I+ Y+ N + G
Sbjct: 123 VMLL-------EGGANPDAKDHYDATAMHRAAAKGNLK--MVHILLFYKASTNIQDTEGN 173
Query: 193 SPLHL 197
+PLHL
Sbjct: 174 TPLHL 178
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLG-----NVSMCK 101
T LH+AV Q EI E L+ + + + D RG+TPLH+A G V
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
C ++ N+ T LA+ HG +L + L S+ N NG T LH
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHG----YLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 162 YAISGYYFVDLAF-QIIHLYEKL---VNFVNERGVSPLHLLATKPNAFRSGSHLGLCT 215
A VDL ++ L K VN V +G SP L +P+ R LG T
Sbjct: 154 LA------VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-RIQQQLGQLT 204
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 18 AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI---IHEKQQL 74
A GK +E+ E D + R + TALH A S G EIVE L+++ +++K
Sbjct: 14 AYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--- 69
Query: 75 KVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPF-FLAARHGHKDA 133
D+ G +PLHIAA G + K + + N TP + A+++ H+ A
Sbjct: 70 ------DDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIA 122
Query: 134 FLCLHYLCASVDDGYNYSRRKNGE-TILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGV 192
+ L + G N + + + T +H A + I+ Y+ N + G
Sbjct: 123 VMLL-------EGGANPDAKDHYDATAMHRAAAKGNLK--MVHILLFYKASTNIQDTEGN 173
Query: 193 SPLHL 197
+PLHL
Sbjct: 174 TPLHL 178
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 47 TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC-----K 101
T LH+AV Q EI E L+ + + + D RG+TPLH+A G ++
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILH 161
C ++ N+ T LA+ HG +L + L S+ N NG T LH
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHG----YLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 162 YAISGYYFVDLAF-QIIHLYEKL---VNFVNERGVSPLHLLATKPNAFRSGSHLGLCTGI 217
A VDL ++ L K VN V +G SP L +P+ R LG T
Sbjct: 157 LA------VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST-RIQQQLGQLT-- 207
Query: 218 IYHCISVDKLQEETSYD 234
+ + + + ++E SYD
Sbjct: 208 LENLQMLPESEDEESYD 224
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 31 GKDDRIHEARITRSGG-----------TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI 79
G+DD E RI + G T LH+ V++G EI+E L++ + +
Sbjct: 25 GQDD---EVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD------VNA 75
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGH 130
D+ G TPLH+AA G++ + + + AD + +++ TP LAA GH
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGH 125
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 25 EVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERG 84
EV+ Y D + +SG T LH+A G EIVE L++ + + D +G
Sbjct: 64 EVLLKYAADVNASD----KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM------DYQG 113
Query: 85 STPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
TPLH+AA G++ + + + AD + ++ +T F ++ +G++D
Sbjct: 114 YTPLHLAAEDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISIDNGNED 160
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 56 GQEEIVEDLVRIIHEKQQLKV----------LKIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G E ++D+ E + V L GD+ G +PLH A G ++ + +
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 106 ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAIS 165
R I N ++TP LAA HGH+D L A ++ + ++G LHYA
Sbjct: 61 RGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-----AVNEHGNVPLHYAC- 113
Query: 166 GYYFVDLAFQIIHLYEKLVNFVNERGVSPL 195
++ D + + LV+ N+ G P+
Sbjct: 114 -FWGQDQVAEDLVANGALVSICNKYGEMPV 142
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D +A SG T LH+A +G EIVE L++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA----SGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
+ + D G TPL +AA G++ + + + AD + + E TP LA
Sbjct: 70 GADVNAV------DHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLA 120
Query: 126 ARHGH 130
A GH
Sbjct: 121 AMFGH 125
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVML---LAVENRQRHVYQLLLKTAI 514
TP+ +AA NG EIVE +LK+ D+N+ M LA + ++LLK
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGA----DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG- 103
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D +G++ LHLAA G
Sbjct: 104 ---ADVNANDMEGHTPLHLAAMFG 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLC 136
L GD+ G +PLH A G ++ + + R I N ++TP LAA HGH+D
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 137 LHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPL 195
L A ++ + ++G LHYA ++ D + + LV+ N+ G P+
Sbjct: 86 LLQYKADIN-----AVNEHGNVPLHYAC--FWGQDQVAEDLVANGALVSICNKYGEMPV 137
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D +A SG T LH+A + G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDA----SGLTPLHLAATYGHLEIVEVLLKH 69
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
+ + ++ GSTPLH+AA +G++ + + + AD + + +TP LA
Sbjct: 70 GADVNAIDIM------GSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLA 120
Query: 126 ARHGH 130
A GH
Sbjct: 121 AIMGH 125
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ H V D G TPLH+AA +G++ + + +
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK--HGADVNAV----DTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KHGAD---VNAQDKFGKTAFDISIDNGNED 160
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIH 69
L K L ++A G+ +EV ++ A + G T LH+A G EIVE L++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVV--GWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 70 EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAAR 127
+ + D GSTPLH+AA G++ + + + AD + ++ TP LAA
Sbjct: 72 D------VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAAN 122
Query: 128 HGH 130
GH
Sbjct: 123 RGH 125
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ + + D+ G TPLH+AA G++ + + +
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGAD------VNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KYGAD---VNAQDKFGKTAFDISINNGNED 160
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D +A SG T LH+A + G EIVE L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDA----SGLTPLHLAATYGHLEIVEVLL-- 67
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
K V I D GSTPLH+AA +G++ + + + AD + + +TP LA
Sbjct: 68 ---KHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLA 120
Query: 126 ARHGH 130
A GH
Sbjct: 121 AIMGH 125
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ H V D G TPLH+AA +G++ + + +
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK--HGADVNAV----DTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KHGAD---VNAQDKFGKTAFDISIDNGNED 160
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 458 TPILIAAKNGITEIVEKILK-SFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQ 516
TP+ +AA G EIVE +LK V +D+ + LA + ++LLK
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP--LHLAALIGHLEIVEVLLKHG--- 103
Query: 517 ETVFRKVDDQGNSALHLAATLG 538
VD G++ LHLAA +G
Sbjct: 104 -ADVNAVDTWGDTPLHLAAIMG 124
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLC 136
+ + + GS+PLH+AA G + + G RN + P LA + GH C
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKC 137
Query: 137 LHYLCASVDDGYNYSRRK-NGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNERGVSPL 195
L +D +++ +G T L YA SG + +A + H +N N +G + L
Sbjct: 138 L------LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTAL 189
Query: 196 HLLATKPNAF 205
H + + F
Sbjct: 190 HEAVIEKHVF 199
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 25 EVVENYGKDDRIHE-----ARITRS---GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKV 76
E EN G DR+ + A + S G T LH A +G +EIV+ L+ +
Sbjct: 10 EAAEN-GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI------SKGAD 62
Query: 77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLC 136
+ D G TPLH AA G+ + K + + + ++ + TP AA+ GHK+
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 137 LHYLCASVD 145
L A V+
Sbjct: 122 LISKGADVN 130
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH A +G +EIV+ L+ + + D G TPLH AA G+ + K +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLI------SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 105 TADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ + + + TP LA HG+++ L
Sbjct: 124 SKGAD-VNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 7 IDQLKKGLFKSAMKGKWNEV---VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVED 63
+ +L K L ++A G + V +EN G D ++ G T LH A +G +EIV+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLEN-GADPNASDS----DGRTPLHYAAENGHKEIVKL 55
Query: 64 LVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETP 121
L+ + D G TPLH AA G+ + K + + ADP ++ + TP
Sbjct: 56 LLSKGADPN------AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTP 106
Query: 122 FFLAARHGHKDAFLCL 137
AA +GHK+ L
Sbjct: 107 LHYAAENGHKEIVKLL 122
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 46 GTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT 105
G L A +G ++ V+DL+ + D G TPLH AA G+ + K + +
Sbjct: 5 GKRLIEAAENGNKDRVKDLL------ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLS 58
Query: 106 --ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHYA 163
ADP ++ + TP AA +GHK+ L L D ++ +G T LHYA
Sbjct: 59 KGADPNA---KDSDGRTPLHYAAENGHKEIVKLL--LSKGADP---NAKDSDGRTPLHYA 110
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH A +G +EIV+ L+ + D G TPLH AA G+ + K +
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPN------AKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
+ ADP + + TP LA HG+++ L
Sbjct: 124 SKGADPNT---SDSDGRTPLDLAREHGNEEIVKLL 155
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQE 517
TP+ AA+NG EIV K+L S +S+ + + A EN + + +LLL
Sbjct: 39 TPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 518 TVFRKVDDQGNSALHLAATLG 538
D G + LH AA G
Sbjct: 98 A----KDSDGRTPLHYAAENG 114
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKV-LKIGDERGSTPLHIAAGLGNVSMCK 101
G TALH AV G EIV+ LV Q V + D G TPLH AA NV +CK
Sbjct: 70 GITALHNAVCAGHTEIVKFLV-------QFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKV-LKIGDERGSTPLHIAAGLGNVSMCK 101
G TALH AV G EIV+ LV Q V + D G TPLH AA NV +CK
Sbjct: 70 GITALHNAVCAGHTEIVKFLV-------QFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A GQ + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADPRLIGERNHENETPFFLAARHGHKD 132
+ +G RNH+ +T LA +G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIH 69
L K L ++A G+ +EV ++ T G T LH+A G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFT--GWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 70 EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHG 129
+ + D G TPLH+AA G++ + + + + +H TP LAA+ G
Sbjct: 72 D------VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH-GFTPLHLAAKRG 124
Query: 130 H 130
H
Sbjct: 125 H 125
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ + + D G TPLH+AA G++ + + +
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGAD------VNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KNGAD---VNAQDKFGKTAFDISIDNGNED 160
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D + SG T LH+A G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAED----DSGKTPLHLAAIKGHLEIVEVLLK- 68
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
H + D+ G TPLH+AA G++ + + + AD + + TP LA
Sbjct: 69 -HGAD----VNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLA 120
Query: 126 ARHGH 130
A GH
Sbjct: 121 ADAGH 125
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 1 MATGIDI----DQLKKGLFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVS 54
MA G D+ D K L +A+KG EV+ +G D + + G T LH+A
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----KMGDTPLHLAAL 89
Query: 55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIG 112
G EIVE L++ + + D G TPLH+AA G++ + + + AD +
Sbjct: 90 YGHLEIVEVLLKNGAD------VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VN 140
Query: 113 ERNHENETPFFLAARHGHKD 132
++ +T F ++ +G++D
Sbjct: 141 AQDKFGKTAFDISIDNGNED 160
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ + + D G TPLH+AA G++ + + +
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGAD------VNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 105 T--ADPRLIGERNHENETPFFLAARHGH 130
AD + +H TP LAA GH
Sbjct: 101 KNGAD---VNANDHNGFTPLHLAANIGH 125
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G E+VE L++ + + D G TPLH+AA +G++ + + +
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGAD------VNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KHGAD---VNAQDKFGKTAFDISIDNGNED 160
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKK---NVMLLAVENRQRHVYQLLLKTAI 514
TP+ +AA G EIVE +LK+ D+N++ + LA + V ++LLK
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGA----DVNADDSLGVTPLHLAADRGHLEVVEVLLKNG- 103
Query: 515 IQETVFRKVDDQGNSALHLAATLG 538
D G + LHLAA +G
Sbjct: 104 ---ADVNANDHNGFTPLHLAANIG 124
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 7 IDQLKKGLFKSAMKGKWNEV---VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVED 63
+ +L K L ++A G + V +EN G D ++ G T LH A +G +E+V+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIEN-GADVNASDS----DGRTPLHHAAENGHKEVVKL 55
Query: 64 LVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFF 123
L+ + + D G TPLH AA G+ + K + + + ++ + TP
Sbjct: 56 LI------SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLH 108
Query: 124 LAARHGHKD 132
AA +GHK+
Sbjct: 109 HAAENGHKE 117
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D + G T LH+A G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTY----GDTPLHLAARVGHLEIVEVLLKN 69
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
+ L D GSTPLH+AA G++ + + + AD + + TP LA
Sbjct: 70 GADVNAL------DFSGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLA 120
Query: 126 ARHGH 130
A GH
Sbjct: 121 ADTGH 125
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
SG T LH+A G EIVE L++ + + D GSTPLH+AA G++ + + +
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 133 LKYGAD---VNAQDKFGKTAFDISIDNGNED 160
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 457 ETPILIAAKNGITEIVEKILKS-FPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAII 515
+TP+ +AA+ G EIVE +LK+ V LD + + LA + + ++LLK
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTP--LHLAAKRGHLEIVEVLLKYG-- 103
Query: 516 QETVFRKVDDQGNSALHLAATLG 538
D G++ LHLAA G
Sbjct: 104 --ADVNADDTIGSTPLHLAADTG 124
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 10 LKKGLFKSAMKGKWNEV---VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR 66
L K L ++A G+ +EV + N G D + +G T LH+A G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILIAN-GADVNA----VDNTGLTPLHLAAVSGHLEIVEVLLK 68
Query: 67 IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFL 124
H + D G TPLH+AA G++ + + + AD + + TP L
Sbjct: 69 --HGAD----VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHL 119
Query: 125 AARHGH 130
AA GH
Sbjct: 120 AADEGH 125
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ + D GSTPLH+AA G++ + + +
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAF------DMTGSTPLHLAADEGHLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KYGAD---VNAQDKFGKTAFDISIDNGNED 160
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 14 LFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEK 71
L +AM G EV+ YG D + +G T LH+A +G EIVE L++ +
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDM----TGSTPLHLAADEGHLEIVEVLLKYGAD- 138
Query: 72 QQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
+ D+ G T I+ GN + K
Sbjct: 139 -----VNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADPRLIGERNHENETPFFLAARHGHKD 132
+ +G RNH+ +T LA +G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 42 TRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCK 101
++ G T LH A +G E V+ L+ + + + G+TPLH+AA G+ + K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL------SKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 102 CIATADPRLIGERNHENETPFFLAARHGHKD 132
+ A + R+ + TP LA ++GH +
Sbjct: 60 LL-LAKGADVNARSKDGNTPEHLAKKNGHHE 89
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
G + G+TPLH AA G+ K + + AD + R+ + TP LAA++GH + L
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 138 HYLCASVDDGYNYSRRKNGETILHYA 163
A V+ +R K+G T H A
Sbjct: 62 LAKGADVN-----ARSKDGNTPEHLA 82
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKN---VMLLAVENRQRHVYQLLLKTAI 514
TP+ AAKNG E V+K+L D+N+ K+ + LA +N + +LLL
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG- 65
Query: 515 IQETVFRKVDDQGNSALHLAATLGDHK 541
+ R D GN+ HLA G H+
Sbjct: 66 -ADVNARSKD--GNTPEHLAKKNGHHE 89
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 10 LKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIH 69
L + L ++A G+ +EV ++ A +G T LH+A G EIVE L++ H
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAA--DNTGTTPLHLAAYSGHLEIVEVLLK--H 69
Query: 70 EKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAAR 127
+ D G TPLH+AA G++ + + + AD + + + TP LAA+
Sbjct: 70 GAD----VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLAAK 122
Query: 128 HGH 130
G+
Sbjct: 123 WGY 125
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G T LH+A G EIVE L++ + + D G TPLH+AA G + + + +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAM------DSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 134 KHGAD---VNAQDKFGKTAFDISIDNGNED 160
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
R+G TALH+A + + + + L+ + I D G TPLH A + +
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLEASADAN------IQDNMGRTPLHAAVSADAQGVFQI 108
Query: 103 IATADPRLIGERNHENETPFFLAAR---HGHKDAFLCLHYLCASVDD 146
+ + R H+ TP LAAR G + + H +VDD
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 31 GKDDRIHEARITRSGG-----------TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI 79
G+DD E RI + G T LH+A ++GQ EIVE L++ + +
Sbjct: 17 GQDD---EVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD------VNA 67
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGH 130
D G TPLH+AA G++ + + + AD + + TP LAA G
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQ 117
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 1 MATGIDIDQLKKG----LFKSAMKGKWN--EVVENYGKDDRIHEARITRSGGTALHIAVS 54
MA G D++ L +A G+ EV+ G D ++ +G T LH+A
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS----AGITPLHLAAY 81
Query: 55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
DG EIVE L++ H + D G TPLH+AA G + + + +
Sbjct: 82 DGHLEIVEVLLK--HGAD----VNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 25 EVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR 66
EV+ +G D ++ R+G T LH+A GQ EIVE L++
Sbjct: 89 EVLLKHGADVNAYD----RAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 1 MATGIDI----DQLKKGLFKSAMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDG 56
MA G D+ DQ L +A G E+VE K AR T G T LH+A +G
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGH-PEIVEVLLKHGADVNARDT-DGWTPLHLAADNG 91
Query: 57 QEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGER 114
EIVE L++ + + D G TPLH+AA G++ + + + AD + +
Sbjct: 92 HLEIVEVLLKYGAD------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNAQ 142
Query: 115 NHENETPFFLAARHGHKD 132
+ +T F ++ +G++D
Sbjct: 143 DKFGKTAFDISIDNGNED 160
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADPRLIGERNHENETPFFLAARHGHKD 132
+ +G RNH+ +T LA +G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + + I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADPRLIGERNHENETPFFLAARHGHKD 132
+ +G RNH+ +T LA +G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
R+G +H A G + ++ L+ + Q V I D G+ PLH+AA G++ + +
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLL-----ENQADV-NIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 103 IATADPRLIGERNHENETPFFLAARHGHKD 132
+ +G RNH+ +T LA +G +
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 26/152 (17%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G +L + Q E++ RI +Q V+ DE G TPL AA G +++ + +
Sbjct: 17 GANSLSVHQLAAQGEMLYLATRI----EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL 72
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHY 162
ADP+L+G+ E+ LA G+ D L V++ Y++ NG T L Y
Sbjct: 73 QNGADPQLLGKG---RESALSLACSKGYTDIVKMLLDCGVDVNE-YDW----NGGTPLLY 124
Query: 163 AISGYYFVDLAFQIIHLYEKLVNFVNERGVSP 194
A+ G + K V + E G P
Sbjct: 125 AVHGNHV------------KCVKMLLESGADP 144
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 26/152 (17%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIA 104
G +L + Q E++ RI +Q V+ DE G TPL AA G +++ + +
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRI----EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL 56
Query: 105 T--ADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGYNYSRRKNGETILHY 162
ADP+L+G+ E+ LA G+ D L V++ Y++ NG T L Y
Sbjct: 57 QNGADPQLLGKG---RESALSLACSKGYTDIVKMLLDCGVDVNE-YDW----NGGTPLLY 108
Query: 163 AISGYYFVDLAFQIIHLYEKLVNFVNERGVSP 194
A+ G + K V + E G P
Sbjct: 109 AVHGNHV------------KCVKMLLESGADP 128
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.2 bits (82), Expect = 0.074, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
R G T LHIAV G V LV + +Q + L I + TPLH+A S+
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLF--QQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 100 CKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVDDGY--NYSRRKNGE 157
+ + TA + H +T LA H CL L S G +R +G
Sbjct: 62 VRLLVTAGASPMALDRH-GQTAAHLACEHRSPT---CLRALLDSAAPGTLDLEARNYDGL 117
Query: 158 TILHYAIS 165
T LH A++
Sbjct: 118 TALHVAVN 125
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH A S G E+ E LV+ V+ + D TPLH AA G +CK
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 103 IAT--ADPRLIGERNHENETPFFL 124
+ ADP ++N + TP L
Sbjct: 127 LLQHGADPT---KKNRDGNTPLDL 147
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH A S G E+ E LV+ V+ + D TPLH AA G +CK
Sbjct: 75 KGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 103 IAT--ADPRLIGERNHENETPFFL 124
+ ADP ++N + TP L
Sbjct: 129 LLQHGADPT---KKNRDGNTPLDL 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 43 RSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKC 102
+ G LH A S G E+ E LV+ V+ + D TPLH AA G +CK
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVK------HGAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 103 IAT--ADPRLIGERNHENETPFFL 124
+ ADP ++N + TP L
Sbjct: 131 LLQHGADPT---KKNRDGNTPLDL 151
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.8 bits (81), Expect = 0.099, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 45 GGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI- 103
G T L +A E +VEDL+ + + D G T LH AA + N +
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADAD------INAADNSGKTALHWAAAVNNTEAVNILL 171
Query: 104 ---ATADPRLIGERNHENETPFFLAARHGHKDA 133
A D + + ++ETP FLAAR G +A
Sbjct: 172 MHHANRDAQ-----DDKDETPLFLAAREGSYEA 199
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL 140
D G TPLH A + + + + + R H+ TP LAAR + L
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 141 CASVDDGYNYSRRKNGETILHYA 163
A ++ N +G+T LH+A
Sbjct: 141 DADINAADN-----SGKTALHWA 158
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D ++ R G T LH+A EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAND----RKGNTPLHLAADYDHLEIVEVLLK- 68
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
H + D GSTPLH+AA G++ + + + AD + ++ +T F ++
Sbjct: 69 -HGAD----VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 120
Query: 126 ARHGHKD 132
+G++D
Sbjct: 121 IDNGNED 127
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 72 QQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHG 129
+Q V+ DE G TPL AA G +++ + + ADP+L+G+ E+ LA G
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG---RESALSLACSKG 78
Query: 130 HKDAFLCLHYLCASVDDGYNYSRRKNGETILHYAISGYYFVDLAFQIIHLYEKLVNFVNE 189
+ D L V++ Y++ NG T L YA+ G + K V + E
Sbjct: 79 YTDIVKMLLDCGVDVNE-YDW----NGGTPLLYAVHGNHV------------KCVKMLLE 121
Query: 190 RGVSP 194
G P
Sbjct: 122 SGADP 126
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 1 MATGIDI---DQLKKGLFKSAMKGKWNEVVE---NYGKDDRIHEARITRSGGTALHIAVS 54
MA G D+ D L A K E+VE YG D + G T LH+A
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD----NYGATPLHLAAD 89
Query: 55 DGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIG 112
+G EIVE L++ H + D G TPLH+AA G++ + + + AD +
Sbjct: 90 NGHLEIVEVLLK--HGAD----VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD---VN 140
Query: 113 ERNHENETPFFLAARHGHKD 132
++ +T F ++ +G++D
Sbjct: 141 AQDKFGKTAFDISIDNGNED 160
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 458 TPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLKTAIIQE 517
TP+ +AAK G EIVE +LK + + ++ + LA +N + ++LLK
Sbjct: 49 TPLHLAAKTGHLEIVEVLLK-YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG---- 103
Query: 518 TVFRKVDDQGNSALHLAATLG 538
D +G + LHLAA G
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDG 124
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L++ H + D G TPLH+AA +G++ + + +
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVLLK--HGAD----VNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 100 LEYGAD---VNAQDKFGKTAFDISIDNGNED 127
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYL 140
D GST LH+AA G+ + + + + + ++ TP A + H D L
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL--- 130
Query: 141 CASVDDGYNYSRRKNGETI-LHY-AISGYYFVDLAFQIIHLYEKLVNFVNERGVSPLHLL 198
+ G + + R N E I LH+ A SG VD+A +I+ + ++ VN G SPLH+
Sbjct: 131 ---LSKGSDINIRDNEENICLHWAAFSG--CVDIA-EILLAAKCDLHAVNIHGDSPLHIA 184
Query: 199 A 199
A
Sbjct: 185 A 185
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 77 LKIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLC 136
K+ + +PLH AA G+V +C + A I + + TP AA + H +A
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 137 LHYLCASVDDGYNYSRRKNGETILHYAI-SGYYFV 170
L A VD + G T LH A G+Y V
Sbjct: 63 LIKAGALVD-----PKDAEGSTCLHLAAKKGHYEV 92
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 416 SLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKI 475
S D +V TH L ++G + R E GKT P+++A + +V+++
Sbjct: 212 SSDDSDVEAITH-LLLDHGADVNVRGERGKT------------PLILAVEKKHLGLVQRL 258
Query: 476 LKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLK 511
L+ + I D +S+ K +LLAVE + + + +LL K
Sbjct: 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 416 SLTDHNVVTDTHKLSRNNGKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKI 475
S D +V TH L ++G + R E GKT P+++A + +V+++
Sbjct: 192 SSDDSDVEAITH-LLLDHGADVNVRGERGKT------------PLILAVEKKHLGLVQRL 238
Query: 476 LKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLLK 511
L+ + I D +S+ K +LLAVE + + + +LL K
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGH 130
DE G TPLH+AA LG++ + + + + E N TP LAA GH
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF-GITPLHLAAIRGH 92
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 10 LKKGLFKSAMKGKWNEV---VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVR 66
L K L ++A G+ +EV + N + + E G T LH+A G EIVE L++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDE-----DGLTPLHLAAQLGHLEIVEVLLK 68
Query: 67 IIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFL 124
+ + D G TPLH+AA G++ + + + AD + ++ +T F +
Sbjct: 69 YGAD------VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDI 119
Query: 125 AARHGHKD 132
+ +G++D
Sbjct: 120 SIDNGNED 127
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L++ H + D G TPLH+AA +G++ + + +
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVLLK--HGAD----VNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 100 LEYGAD---VNAQDKFGKTAFDISIDNGNED 127
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLH 138
DERG TPL A+ G + + + ADP ++ + E E+ LA+ G+ D L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAK---ERESALSLASTGGYTDIVGLL- 88
Query: 139 YLCASVD-DGYNYSRRKNGETILHYAISG 166
L VD + Y++ NG T L YA+ G
Sbjct: 89 -LERDVDINIYDW----NGGTPLLYAVRG 112
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 18 AMKGKWNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVL 77
M+ +++VEN+ D++ + I G TAL AV + + I E L+ + +
Sbjct: 46 GMENAIDKLVENF---DKLEDKDI--EGSTALIWAVKNNRLGIAEKLL------SKGSNV 94
Query: 78 KIGDERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCL 137
D G TPL + G M + + +RN E ETP +A+++G + L
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 138 HYLCASV 144
L A +
Sbjct: 154 LELGADI 160
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 12/44 (27%)
Query: 434 GKNSEDRNEGGKTGSTIPDTVKRETPILIAAKNGITEIVEKILK 477
G N DRN G ETP+++A+K G +EIV+K+L+
Sbjct: 124 GANVNDRNLEG------------ETPLIVASKYGRSEIVKKLLE 155
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 44 SGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCI 103
+G T LH+A G EIVE L++ H + D G TPLH+AA +G++ + + +
Sbjct: 46 AGVTPLHLAAKRGHLEIVEVLLK--HGAD----VNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 104 AT--ADPRLIGERNHENETPFFLAARHGHKD 132
AD + ++ +T F ++ +G++D
Sbjct: 100 LEYGAD---VNAQDKFGKTAFDISIDNGNED 127
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGH 130
D+ G TPLH+AA G++ + + + AD + R+ TP LAA GH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGH 92
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKDAFLCLH 138
DERG TPL A+ G + + + ADP ++ + E E+ LA+ G+ D L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAK---ERESALSLASTGGYTDIVGLL- 88
Query: 139 YLCASVD-DGYNYSRRKNGETILHYAISG 166
L VD + Y++ NG T L YA+ G
Sbjct: 89 -LERDVDINIYDW----NGGTPLLYAVHG 112
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
R R G TALH+A + E+VE LV + + +++ DERG T L +A +
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALELAR-----EI 153
Query: 100 CKCIATADPRLIGER 114
K +P G R
Sbjct: 154 LKTTPKGNPMQFGRR 168
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 40 RITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSM 99
R R G TALH+A + E+VE LV + + +++ DERG T L +A +
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALELAR-----EI 154
Query: 100 CKCIATADPRLIGER 114
K +P G R
Sbjct: 155 LKTTPKGNPMQFGRR 169
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
+T G TALH+AV E ++ L+ + L + ++ G T LH+AA LG S
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 101 -KCIATADPRLIGERNHENETPFFLAAR 127
K A L+ ER T LA R
Sbjct: 62 EKLYAAGAGVLVAERG--GHTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 41 ITRSGGTALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMC 100
+T G TALH+AV E ++ L+ + L + ++ G T LH+AA LG S
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 101 -KCIATADPRLIGERNHENETPFFLAAR 127
K A L+ ER T LA R
Sbjct: 62 EKLYAAGAGVLVAERG--GHTALHLACR 87
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 41 ITRSGGTALHI-AVSDGQEEIVEDLVRIIHEKQQLKVLKIGDER-------GSTPLHIAA 92
+ R+G TAL I A ++G++++ +++ EK KV G R G T LH AA
Sbjct: 231 LDRNGXTALXIVAHNEGRDQVAS--AKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 93 GLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKDAFLCLHYLCASVD--DGYNY 150
+ N + K + +++ + +TP LAA+ G + L ASV+ D ++
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347
Query: 151 SRRKNGETILHYAI 164
+ R+ + H+ I
Sbjct: 348 TARQLAQANNHHNI 361
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 25/115 (21%)
Query: 31 GKDDRIHEARITRSGG-----------TALHIAVSDGQEEIVEDLVRIIHEKQQLKVLKI 79
G+DD E RI + G T L++A + G EIVE L++ + +
Sbjct: 25 GQDD---EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV----- 76
Query: 80 GDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLAARHGHKD 132
D G TPLH+AA +G++ + + + AD + ++ +T F ++ +G++D
Sbjct: 77 -DAIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNED 127
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 33 DDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI--IHEKQQLKVLKIGDERGSTPLHI 90
D+R+ + ++G TAL+ A G ++IVE L I QQ K+ G T LH
Sbjct: 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKL-------GDTALHA 146
Query: 91 AAGLGNVSMCKCIATADPRLIGERNHENETPFFLA 125
AA G + + + R RN E + F A
Sbjct: 147 AAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDXA 180
>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing
Protein
Length = 230
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 8 DQLKKGLFKSAMKGK--WNEVVENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLV 65
D LK+ KS +KGK ++E + G + E RI + L A+ G +
Sbjct: 20 DGLKRIATKSIVKGKKVYDEKIIKIGDE----EYRIWNPNKSKLAAAIIKG--------L 67
Query: 66 RIIHEKQQLKVLKIGDERGSTPLHIA 91
+++ K+ K+L +G G+TP H+A
Sbjct: 68 KVMPIKRDSKILYLGASAGTTPSHVA 93
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 10 LKKGLFKSAMKGKWNEV--VENYGKDDRIHEARITRSGGTALHIAVSDGQEEIVEDLVRI 67
L K L ++A G+ +EV + G D + + G T LH+A + EIVE L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAED----KVGLTPLHLAAMNDHLEIVEVLL-- 67
Query: 68 IHEKQQLKVLKIGDERGSTPLHIAAGLGNVSMCKCIAT--ADPRLIGERNHENETPFFLA 125
K V I D G TPLH+ A G++ + + + AD + ++ +T F ++
Sbjct: 68 ---KNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 120
Query: 126 ARHGHKD 132
+G++D
Sbjct: 121 IDNGNED 127
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCIATADPRLIGERNHENETPFFLAARHGHKD 132
D G++PLH+AA G+ S + + A R + TP +AA GH +
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHAN 81
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
D+ GSTPLH+AA G++ + K + A AD + ++ +T F ++ +G++D
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGAD---VNAQDKFGKTAFDISIDNGNED 86
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 81 DERGSTPLHIAAGLGNVSMCKCI--ATADPRLIGERNHENETPFFLAARHGHKD 132
D+ GSTPLH+AA G++ + K + A AD + ++ +T F ++ +G++D
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNED 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,319,119
Number of Sequences: 62578
Number of extensions: 989186
Number of successful extensions: 2655
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2208
Number of HSP's gapped (non-prelim): 351
length of query: 763
length of database: 14,973,337
effective HSP length: 106
effective length of query: 657
effective length of database: 8,340,069
effective search space: 5479425333
effective search space used: 5479425333
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)