Query 004288
Match_columns 763
No_of_seqs 265 out of 781
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 20:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 6.1E-41 2.1E-45 304.7 9.6 95 180-275 10-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 5.9E-40 2E-44 301.9 10.0 96 179-276 11-108 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 1.5E-15 5.2E-20 132.0 9.7 56 402-457 17-72 (79)
4 2elk_A SPCC24B10.08C protein; 99.3 2E-12 6.7E-17 105.9 6.9 48 403-450 9-58 (58)
5 1x41_A Transcriptional adaptor 99.2 1.5E-11 5.2E-16 101.1 7.2 50 402-451 7-57 (60)
6 1wgx_A KIAA1903 protein; MYB D 99.0 8.2E-10 2.8E-14 94.7 6.5 47 403-449 8-58 (73)
7 2cqr_A RSGI RUH-043, DNAJ homo 99.0 5.3E-10 1.8E-14 95.9 5.3 51 401-452 16-70 (73)
8 1guu_A C-MYB, MYB proto-oncoge 98.9 9.7E-10 3.3E-14 87.4 5.5 45 403-447 3-48 (52)
9 2yum_A ZZZ3 protein, zinc fing 98.9 8.9E-10 3E-14 94.1 5.2 46 402-447 7-58 (75)
10 1gvd_A MYB proto-oncogene prot 98.9 1.5E-09 5.2E-14 86.4 5.8 45 403-447 3-48 (52)
11 2cu7_A KIAA1915 protein; nucle 98.9 2.3E-09 7.8E-14 91.1 6.5 47 401-447 7-53 (72)
12 2d9a_A B-MYB, MYB-related prot 98.9 3.2E-09 1.1E-13 86.9 7.1 46 402-447 7-53 (60)
13 1w0t_A Telomeric repeat bindin 98.8 3.5E-09 1.2E-13 84.8 6.0 44 404-447 3-49 (53)
14 2dim_A Cell division cycle 5-l 98.8 7.2E-09 2.5E-13 87.4 7.2 46 402-447 8-54 (70)
15 3sjm_A Telomeric repeat-bindin 98.7 1.1E-08 3.8E-13 85.5 6.0 45 403-447 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 98.7 1.5E-08 5.2E-13 85.3 6.0 45 403-447 10-57 (69)
17 2eqr_A N-COR1, N-COR, nuclear 98.7 2E-08 6.8E-13 83.0 6.3 44 403-446 12-55 (61)
18 2din_A Cell division cycle 5-l 98.7 2E-08 6.8E-13 83.8 6.3 45 402-447 8-52 (66)
19 2cjj_A Radialis; plant develop 98.6 2.1E-08 7.2E-13 89.7 5.3 45 403-447 8-56 (93)
20 2ltp_A Nuclear receptor corepr 98.0 5.1E-09 1.7E-13 92.7 0.0 47 401-447 14-60 (89)
21 2llk_A Cyclin-D-binding MYB-li 98.5 1.2E-07 4.1E-12 81.3 6.9 46 401-447 21-66 (73)
22 2iw5_B Protein corest, REST co 98.5 8E-08 2.8E-12 97.8 6.5 46 402-447 132-177 (235)
23 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.1E-07 3.9E-12 86.2 5.8 43 404-446 2-45 (107)
24 1gv2_A C-MYB, MYB proto-oncoge 98.5 1.3E-07 4.5E-12 85.1 5.9 45 403-447 4-49 (105)
25 2k9n_A MYB24; R2R3 domain, DNA 98.4 2.4E-07 8.2E-12 84.0 6.6 46 402-447 52-97 (107)
26 1h8a_C AMV V-MYB, MYB transfor 98.4 3.5E-07 1.2E-11 85.3 7.1 45 402-446 26-71 (128)
27 3osg_A MYB21; transcription-DN 98.4 2.4E-07 8.2E-12 86.4 5.8 44 403-446 11-54 (126)
28 1gv2_A C-MYB, MYB proto-oncoge 98.4 2.3E-07 7.9E-12 83.5 5.5 46 402-447 55-100 (105)
29 2yqk_A Arginine-glutamic acid 98.4 5.2E-07 1.8E-11 75.0 7.1 44 402-445 8-52 (63)
30 2ckx_A NGTRF1, telomere bindin 98.4 2.9E-07 1E-11 80.8 5.8 43 405-447 2-49 (83)
31 3osg_A MYB21; transcription-DN 98.4 2.5E-07 8.7E-12 86.3 5.4 45 403-447 62-106 (126)
32 1h8a_C AMV V-MYB, MYB transfor 98.3 6E-07 2E-11 83.7 6.2 46 402-447 78-123 (128)
33 2cqq_A RSGI RUH-037, DNAJ homo 98.3 7.7E-07 2.6E-11 76.1 5.9 48 403-452 8-59 (72)
34 2xag_B REST corepressor 1; ami 98.3 6.3E-07 2.2E-11 100.3 6.7 45 402-446 379-423 (482)
35 3zqc_A MYB3; transcription-DNA 98.3 2.4E-07 8.4E-12 86.8 2.6 44 404-447 3-47 (131)
36 3zqc_A MYB3; transcription-DNA 98.3 7.3E-07 2.5E-11 83.6 5.8 45 403-447 54-98 (131)
37 2z3y_A Lysine-specific histone 98.2 5.9E-07 2E-11 103.8 5.3 87 186-275 8-98 (662)
38 4gut_A Lysine-specific histone 98.2 1.4E-06 4.8E-11 103.1 7.7 89 179-273 215-321 (776)
39 2crg_A Metastasis associated p 98.2 2.2E-06 7.6E-11 72.8 5.9 44 403-446 8-52 (70)
40 2roh_A RTBP1, telomere binding 98.1 3.1E-06 1.1E-10 79.2 6.1 45 403-447 31-80 (122)
41 1h89_C C-MYB, MYB proto-oncoge 98.1 3.5E-06 1.2E-10 81.2 6.1 46 402-447 109-154 (159)
42 1h89_C C-MYB, MYB proto-oncoge 98.1 4.2E-06 1.4E-10 80.6 6.6 46 402-447 57-103 (159)
43 2aje_A Telomere repeat-binding 98.0 2.8E-06 9.7E-11 77.6 4.5 46 402-447 12-62 (105)
44 4a69_C Nuclear receptor corepr 98.0 5.3E-06 1.8E-10 74.3 5.9 42 404-445 44-85 (94)
45 2juh_A Telomere binding protei 98.0 4.9E-06 1.7E-10 77.8 5.0 46 402-447 16-66 (121)
46 4eef_G F-HB80.4, designed hema 97.9 8.3E-07 2.8E-11 76.0 -1.1 42 403-444 20-65 (74)
47 2e5r_A Dystrobrevin alpha; ZZ 97.9 9.1E-06 3.1E-10 67.7 4.5 48 346-393 12-61 (63)
48 2dip_A Zinc finger SWIM domain 97.8 4.7E-06 1.6E-10 75.2 1.6 54 346-410 32-86 (98)
49 1x58_A Hypothetical protein 49 97.7 4.3E-05 1.5E-09 63.6 4.9 46 402-447 7-55 (62)
50 2fc7_A ZZZ3 protein; structure 97.6 3.3E-05 1.1E-09 67.6 4.2 51 345-395 21-76 (82)
51 2xag_A Lysine-specific histone 97.3 0.00018 6.2E-09 86.1 6.6 87 186-275 179-269 (852)
52 1ign_A Protein (RAP1); RAP1,ye 97.1 0.00023 8E-09 73.2 4.1 45 403-447 8-58 (246)
53 1tot_A CREB-binding protein; z 97.1 0.00012 4.3E-09 58.7 1.5 44 345-394 6-49 (52)
54 2ebi_A DNA binding protein GT- 96.1 0.003 1E-07 54.9 3.3 45 403-447 4-62 (86)
55 3hm5_A DNA methyltransferase 1 95.8 0.011 3.7E-07 52.9 5.7 44 404-447 31-79 (93)
56 2xag_B REST corepressor 1; ami 95.4 0.0026 9E-08 71.4 0.0 44 404-447 190-233 (482)
57 1ofc_X ISWI protein; nuclear p 95.3 0.012 4.1E-07 62.8 4.7 46 404-450 111-157 (304)
58 1ug2_A 2610100B20RIK gene prod 95.3 0.023 8E-07 50.5 5.6 44 404-447 34-80 (95)
59 1fex_A TRF2-interacting telome 95.1 0.017 5.7E-07 47.5 3.9 43 404-446 3-55 (59)
60 2cuj_A Transcriptional adaptor 94.1 0.081 2.8E-06 48.5 6.3 70 191-269 37-106 (108)
61 2aqe_A Transcriptional adaptor 94.0 0.062 2.1E-06 47.6 5.2 70 191-269 19-88 (90)
62 2elj_A Transcriptional adapter 93.1 0.099 3.4E-06 46.1 4.9 70 191-268 19-88 (88)
63 4iej_A DNA methyltransferase 1 92.9 0.15 5.2E-06 45.6 5.8 45 403-447 30-79 (93)
64 2lr8_A CAsp8-associated protei 91.1 0.031 1.1E-06 47.3 0.0 43 404-447 15-60 (70)
65 2xb0_X Chromo domain-containin 91.7 0.11 3.7E-06 54.6 4.0 31 402-432 167-198 (270)
66 4b4c_A Chromodomain-helicase-D 91.1 0.16 5.6E-06 50.4 4.4 30 403-432 134-164 (211)
67 4b4c_A Chromodomain-helicase-D 88.5 0.45 1.6E-05 47.1 5.2 39 404-442 8-51 (211)
68 1irz_A ARR10-B; helix-turn-hel 87.7 1 3.5E-05 37.7 6.0 44 403-446 7-55 (64)
69 2y9y_A Imitation switch protei 84.0 0.83 2.8E-05 50.0 4.7 43 404-447 124-168 (374)
70 1ofc_X ISWI protein; nuclear p 81.0 1.5 5.1E-05 46.8 5.2 47 402-448 211-273 (304)
71 2d8v_A Zinc finger FYVE domain 58.4 12 0.00042 31.4 4.7 45 345-392 8-52 (67)
72 2y9y_A Imitation switch protei 52.9 14 0.00047 40.5 5.3 46 403-448 228-289 (374)
73 2heo_A Z-DNA binding protein 1 49.3 15 0.00051 30.0 3.8 52 216-269 5-56 (67)
74 1v5n_A PDI-like hypothetical p 49.2 10 0.00036 33.1 3.0 31 345-376 47-77 (89)
75 2fu4_A Ferric uptake regulatio 47.5 10 0.00035 31.4 2.6 50 222-271 18-71 (83)
76 1mzb_A Ferric uptake regulatio 44.2 20 0.00069 32.9 4.3 49 222-270 19-71 (136)
77 3e7l_A Transcriptional regulat 42.7 21 0.00072 28.6 3.7 27 408-434 18-44 (63)
78 3ny3_A E3 ubiquitin-protein li 42.7 12 0.00042 31.9 2.3 32 358-393 16-50 (75)
79 2o03_A Probable zinc uptake re 42.2 36 0.0012 30.9 5.6 53 218-271 8-64 (131)
80 1weo_A Cellulose synthase, cat 40.7 16 0.00054 32.6 2.7 47 344-391 15-70 (93)
81 3nis_A E3 ubiquitin-protein li 39.4 15 0.00052 31.9 2.5 40 350-393 10-54 (82)
82 2w57_A Ferric uptake regulatio 39.2 20 0.00069 33.6 3.5 49 222-270 18-70 (150)
83 2xig_A Ferric uptake regulatio 36.9 31 0.0011 32.2 4.4 51 220-271 26-80 (150)
84 4ham_A LMO2241 protein; struct 35.2 47 0.0016 30.2 5.3 57 213-271 11-71 (134)
85 2qdq_A Talin-1; dimerisation d 35.1 71 0.0024 25.5 5.3 29 620-649 11-39 (50)
86 2htj_A P fimbrial regulatory p 34.5 32 0.0011 28.4 3.7 46 223-271 2-47 (81)
87 1f5n_A Interferon-induced guan 34.4 2.9E+02 0.01 31.8 12.7 35 412-446 298-337 (592)
88 3pp5_A BRK1, protein brick1; t 32.6 1.3E+02 0.0045 25.7 7.0 66 589-655 2-70 (73)
89 2fe3_A Peroxide operon regulat 30.9 44 0.0015 31.0 4.3 49 222-271 23-75 (145)
90 3tqn_A Transcriptional regulat 30.7 47 0.0016 29.4 4.3 55 215-271 11-66 (113)
91 3by6_A Predicted transcription 30.4 57 0.002 29.6 4.9 55 215-271 13-68 (126)
92 3mwm_A ZUR, putative metal upt 28.9 71 0.0024 29.4 5.4 52 218-270 11-66 (139)
93 2o1k_A NS28, non-structural gl 27.1 1.5E+02 0.005 23.7 5.9 34 605-639 2-35 (52)
94 1ykh_B RNA polymerase II holoe 26.7 1.5E+02 0.0052 27.6 7.2 45 605-650 70-120 (132)
95 2ek5_A Predicted transcription 26.7 49 0.0017 30.3 3.8 55 215-271 6-61 (129)
96 2e50_A Protein SET; histone ch 26.2 1.7E+02 0.0057 29.6 7.9 44 607-650 27-76 (225)
97 3eyy_A Putative iron uptake re 26.1 60 0.0021 30.1 4.3 47 222-270 20-70 (145)
98 2xb0_X Chromo domain-containin 26.0 73 0.0025 33.3 5.3 36 404-439 4-44 (270)
99 4efa_E V-type proton ATPase su 25.5 5E+02 0.017 25.7 12.6 49 581-629 16-64 (233)
100 1yke_B RNA polymerase II holoe 25.4 1.6E+02 0.0053 28.2 7.1 45 605-650 70-120 (151)
101 3kyp_A Pfnaps, nucleosome asse 24.8 1.1E+02 0.0036 30.3 6.0 35 616-650 8-46 (193)
102 3m91_A Proteasome-associated A 24.8 2E+02 0.0068 22.9 6.4 25 617-641 22-46 (51)
103 2zd7_A VPS75, vacuolar protein 23.7 1.6E+02 0.0055 30.4 7.4 44 604-650 7-52 (264)
104 1umq_A Photosynthetic apparatu 23.6 65 0.0022 27.7 3.7 29 405-433 37-65 (81)
105 3c7j_A Transcriptional regulat 23.4 32 0.0011 34.4 2.0 57 213-271 26-82 (237)
106 2key_A Putative phage integras 22.5 1E+02 0.0034 25.8 4.8 57 203-270 40-97 (112)
107 3ic7_A Putative transcriptiona 22.1 46 0.0016 30.1 2.6 57 213-271 11-68 (126)
108 1ign_A Protein (RAP1); RAP1,ye 21.8 1.1E+02 0.0039 31.6 5.7 24 424-447 173-196 (246)
109 3dpt_A ROCO, RAB family protei 21.5 58 0.002 34.8 3.6 61 213-275 12-75 (332)
110 2olm_A Nucleoporin-like protei 20.7 1.1E+02 0.0036 29.0 4.9 57 345-415 25-81 (140)
111 2pjp_A Selenocysteine-specific 20.3 1.1E+02 0.0039 27.2 4.9 52 214-268 59-110 (121)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=6.1e-41 Score=304.65 Aligned_cols=95 Identities=35% Similarity=0.690 Sum_probs=84.6
Q ss_pred ceeCCCCCCCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHH
Q 004288 180 VHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIF 259 (763)
Q Consensus 180 ~ivIPSyS~WF~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh 259 (763)
.=.-|+|+.||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+| |+++|+|||
T Consensus 10 ~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RVh 88 (104)
T 2fq3_A 10 HGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRLH 88 (104)
T ss_dssp -------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHHH
T ss_pred CCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HhhhhhcccccccCCC
Q 004288 260 RFLNHWGIINYCAAVQ 275 (763)
Q Consensus 260 ~FLe~WGLINy~~dp~ 275 (763)
+|||+||||||++||+
T Consensus 89 ~FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 89 KFLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHHTTSSSSCC---
T ss_pred HHHHHcCeeccCCCCC
Confidence 9999999999999974
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=5.9e-40 Score=301.87 Aligned_cols=96 Identities=24% Similarity=0.370 Sum_probs=92.8
Q ss_pred cceeCCCCCCCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhccc--CCCCHHHHH
Q 004288 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DGVSPEDLT 256 (763)
Q Consensus 179 ~~ivIPSyS~WF~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l--~g~Dv~~i~ 256 (763)
.+++||+|+.||+|++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++| +| |+++|+
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~i~ 88 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNCIG 88 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHHHH
Confidence 57999999999999999999999999999998 899999999999999999999999999999999999 46 999999
Q ss_pred HHHHhhhhhcccccccCCCC
Q 004288 257 RIFRFLNHWGIINYCAAVQS 276 (763)
Q Consensus 257 RVh~FLe~WGLINy~~dp~~ 276 (763)
|||+|||+||||||++++.+
T Consensus 89 RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 89 RIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHcCeeecCCChhh
Confidence 99999999999999999864
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=132.03 Aligned_cols=56 Identities=55% Similarity=1.147 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcCCCCCCcccCC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENV 457 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqLPIED~fL~~~ 457 (763)
....||.+|+.+||+||++||+||.+||+|||+||..||+.||+++||+|+|+...
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccC
Confidence 45789999999999999999999999999999999999999999999999998764
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.32 E-value=2e-12 Score=105.88 Aligned_cols=48 Identities=31% Similarity=0.726 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhcCCCC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLPME 450 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVG-tKT~eECilHFlqLPIE 450 (763)
...||.+|+.+||++|++|| +||.+||++|+ +||..||..||.+++|.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 56899999999999999999 99999999999 99999999999999874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.5e-11 Score=101.13 Aligned_cols=50 Identities=28% Similarity=0.611 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcCCCCC
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMED 451 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqLPIED 451 (763)
....||.+|+.+||++|++|| ++|.+||++|++||..||..||.++.+..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 457899999999999999999 89999999999999999999999987754
No 6
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=8.2e-10 Score=94.72 Aligned_cols=47 Identities=21% Similarity=0.470 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhcCCC
Q 004288 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPM 449 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECilHFlqLPI 449 (763)
...||.+|+.+|.+||..|+ ++|++||++||+||++||+.||..|+=
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999999997 579999999999999999999999843
No 7
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=5.3e-10 Score=95.92 Aligned_cols=51 Identities=31% Similarity=0.595 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCC
Q 004288 401 IDGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (763)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECilHFlqLPIED~ 452 (763)
.....||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 3457899999999999999999 6899999999999999999999876 5553
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.92 E-value=9.7e-10 Score=87.43 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35899999999999999999 5999999999999999999999763
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8.9e-10 Score=94.08 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC------CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYN------DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG------gNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+|+++|++|| ++|.+||++|++||..||..||.++
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~ 58 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKY 58 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456899999999999999999 7899999999999999999999754
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.90 E-value=1.5e-09 Score=86.39 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+|+++|++|| .+|..||++|++||..||..||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45899999999999999999 6899999999999999999999864
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.88 E-value=2.3e-09 Score=91.11 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999765
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.88 E-value=3.2e-09 Score=86.94 Aligned_cols=46 Identities=20% Similarity=0.540 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456899999999999999999 7999999999999999999999764
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.84 E-value=3.5e-09 Score=84.81 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVG--tKT~eECilHFlqL 447 (763)
..||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5799999999999999999 89999999999 99999999999764
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=7.2e-09 Score=87.40 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 356899999999999999999 8999999999999999999999874
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.74 E-value=1.1e-08 Score=85.48 Aligned_cols=45 Identities=16% Similarity=0.440 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVG--tKT~eECilHFlqL 447 (763)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999999999999 89999999987 89999999999654
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.71 E-value=1.5e-08 Score=85.28 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVG--tKT~eECilHFlqL 447 (763)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 56899999999999999999 89999999999 99999999999864
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2e-08 Score=82.96 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhc
Q 004288 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlq 446 (763)
...||.+|..+|++++.+||.+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999963
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2e-08 Score=83.76 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+|+++++.||.+|.+||+.+| ||..||..||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 45689999999999999999999999999776 9999999999864
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.64 E-value=2.1e-08 Score=89.74 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+|+++|.+|+ +.|.+||++|++||.+||+.||..|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999996 5699999999999999999999876
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.02 E-value=5.1e-09 Score=92.71 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34578999999999999999999999999999999999999999753
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-07 Score=81.33 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 401 ~~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
.....||.+|+.+|++++++||..|.+||+++ +||..||..+|..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34578999999999999999998899999999 99999999999865
No 22
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.53 E-value=8e-08 Score=97.82 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||++|..++++|+.+||.||..||++|||||..||+.||...
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999743
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.49 E-value=1.1e-07 Score=86.17 Aligned_cols=43 Identities=19% Similarity=0.419 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 004288 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVR 446 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlq 446 (763)
..||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 4699999999999999999 699999999999999999999986
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.48 E-value=1.3e-07 Score=85.07 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 46899999999999999999 6899999999999999999999874
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.44 E-value=2.4e-07 Score=84.01 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..|
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999764
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.41 E-value=3.5e-07 Score=85.25 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVR 446 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlq 446 (763)
....||.+|+.+|+++|++|| ++|.+||++|++||..||..||..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 356899999999999999999 689999999999999999999986
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.40 E-value=2.4e-07 Score=86.40 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhc
Q 004288 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlq 446 (763)
...||.+|+.+|+++|++||.||..||++|++||..||..||..
T Consensus 11 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 56899999999999999999999999999999999999999986
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.40 E-value=2.3e-07 Score=83.48 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999753
No 29
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=5.2e-07 Score=75.04 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHh
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFV 445 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAeh-VGtKT~eECilHFl 445 (763)
....||++|..++++||.+||-||..|++| |++||..||+.+|.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 457899999999999999999999999997 99999999999985
No 30
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.39 E-value=2.9e-07 Score=80.75 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHcC-CCHHHHHHH----hCCCCHHHHHHHHhcC
Q 004288 405 TWSDQETFLLLEGIEMYN-DNWNEIAEH----VSTKSKAQCILHFVRL 447 (763)
Q Consensus 405 ~WT~eEellLLEaIe~yG-gNW~~IAeh----VGtKT~eECilHFlqL 447 (763)
.||.+|+.+|++||++|| |+|.+|+++ +.+||..+|..||..+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 699999999999999999 799999997 7789999999999775
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.38 E-value=2.5e-07 Score=86.26 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+||+++.+||.+|.+||++|++||..+|..||..|
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999764
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.31 E-value=6e-07 Score=83.69 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+||+++.+||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999764
No 33
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.30 E-value=7.7e-07 Score=76.12 Aligned_cols=48 Identities=15% Similarity=0.372 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCC
Q 004288 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECilHFlqLPIED~ 452 (763)
...||.+|..+|..+|.+|+ +.|++||++|| ||.+||+.||-.| .+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 46899999999999999997 45999999995 9999999999887 6664
No 34
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.28 E-value=6.3e-07 Score=100.27 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhc
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlq 446 (763)
....||++|.+++|+||.+||-||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999975
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.27 E-value=2.4e-07 Score=86.82 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
..||.+|+.+|+++|+.|| +||..||++|++||..||..||..+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 5799999999999999999 8999999999999999999999763
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.27 E-value=7.3e-07 Score=83.61 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999775
No 37
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.24 E-value=5.9e-07 Score=103.85 Aligned_cols=87 Identities=21% Similarity=0.392 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhc----ccCCCCHHHHHHHHHh
Q 004288 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG----LVDGVSPEDLTRIFRF 261 (763)
Q Consensus 186 yS~WF~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr----~l~g~Dv~~i~RVh~F 261 (763)
+++-|+.+.+|+.|+.+|||+-.+ +..+...|+.|||.|+.+|+.||..+||+.+|.. .+.. |...|.+|++|
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~ 84 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 84 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHH
Confidence 356789999999999999999764 2335679999999999999999999999999833 3333 77889999999
Q ss_pred hhhhcccccccCCC
Q 004288 262 LNHWGIINYCAAVQ 275 (763)
Q Consensus 262 Le~WGLINy~~dp~ 275 (763)
+..||+||+++.+.
T Consensus 85 ~~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 85 LERHGLINFGIYKR 98 (662)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCCccc
Confidence 99999999887654
No 38
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.21 E-value=1.4e-06 Score=103.09 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=75.2
Q ss_pred cceeCCCCCCCCCC------------CCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcc
Q 004288 179 RVHVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGL 246 (763)
Q Consensus 179 ~~ivIPSyS~WF~~------------~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~ 246 (763)
+...+..|-.||-. +.++..|+.++|||..+ +.+|+.|||.|+.+|+.||...||...|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~~ 288 (776)
T 4gut_A 215 HVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIPH 288 (776)
T ss_dssp ---CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGGG
T ss_pred cccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhhh
Confidence 45677889999977 99999999999999754 5799999999999999999999999999877
Q ss_pred cCC---C---CHHHHHHHHHhhhhhcccccccC
Q 004288 247 VDG---V---SPEDLTRIFRFLNHWGIINYCAA 273 (763)
Q Consensus 247 l~g---~---Dv~~i~RVh~FLe~WGLINy~~d 273 (763)
+.- . .+..+.+|++||.++|+||+.+.
T Consensus 289 ~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 289 IIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred cccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 632 1 34568999999999999999874
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.16 E-value=2.2e-06 Score=72.75 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHhc
Q 004288 403 GETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFVR 446 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAeh-VGtKT~eECilHFlq 446 (763)
...||++|..++++||.+||-||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 36899999999999999999999999995 999999999999964
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.10 E-value=3.1e-06 Score=79.23 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehV----GtKT~eECilHFlqL 447 (763)
...||.+|+..|++||++|| |+|.+|+++. ..||..+|..+|..|
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 46899999999999999999 8999999986 689999999999775
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.07 E-value=3.5e-06 Score=81.16 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+||+++.+||.+|.+||++|.+||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999765
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.07 E-value=4.2e-06 Score=80.64 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqL 447 (763)
....||.+|+.+|+++++.|| .+|..||++|++||..||..||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999999 6899999999999999999999764
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.04 E-value=2.8e-06 Score=77.58 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehV----GtKT~eECilHFlqL 447 (763)
....||.+|+..|++||++|| |+|.+|++.. ..||..+|..+|..|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999 7999999976 579999999999775
No 44
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.03 E-value=5.3e-06 Score=74.26 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHh
Q 004288 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFV 445 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFl 445 (763)
..||++|..++.+++..||-||..||++|++||..||+.+|.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 579999999999999999999999999999999999999995
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.98 E-value=4.9e-06 Score=77.77 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehV----GtKT~eECilHFlqL 447 (763)
....||.+|+..|++||++|| |+|.+|+++. ..||..+|..+|..|
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999 7999999996 579999999999764
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.93 E-value=8.3e-07 Score=76.00 Aligned_cols=42 Identities=21% Similarity=0.519 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHH
Q 004288 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHF 444 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehVGtKT~eECilHF 444 (763)
+..||.+|..+|-.||.+|. +.|++||+.||+||++||+.||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 46899999999999999998 3699999999999999999998
No 47
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=9.1e-06 Score=67.74 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=42.0
Q ss_pred CcCCCCCCC-CCcceeeccCCcCcccChhhhhcCCCCCCCCC-CCceecC
Q 004288 346 NHCNYCSQP-IPAVYYQSQKEVDVLLCPECFHEGRFVTGHSS-LDYIRVD 393 (763)
Q Consensus 346 ~~C~~C~~~-~~~~~y~c~kc~d~~LC~~CFs~G~e~~~hsS-~Df~rVd 393 (763)
..|+.|+.. +...+|+|.+|.+++||..||..|.+...|+. |.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 689999975 88999999999999999999999999999974 6666553
No 48
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.81 E-value=4.7e-06 Score=75.23 Aligned_cols=54 Identities=30% Similarity=0.615 Sum_probs=44.4
Q ss_pred CcCCCCCC-CCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHH
Q 004288 346 NHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQE 410 (763)
Q Consensus 346 ~~C~~C~~-~~~~~~y~c~kc~d~~LC~~CFs~G~e~~~hsS~Df~rVd~~~~~~~~~~~~WT~eE 410 (763)
..|+.|+. ++...+|+|..|.+|+||..||..|. |..|.|+++... ...|+..|
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~~-------~~~w~~~e 86 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREKR-------NQKWRSLE 86 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCSS-------SCCCEECC
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecCC-------CCCCcccc
Confidence 68999996 68889999999999999999999985 667889887653 23576544
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.65 E-value=4.3e-05 Score=63.59 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHH---HhCCCCHHHHHHHHhcC
Q 004288 402 DGETWSDQETFLLLEGIEMYNDNWNEIAE---HVSTKSKAQCILHFVRL 447 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yGgNW~~IAe---hVGtKT~eECilHFlqL 447 (763)
....||.+|+..||+||++||-+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 35789999999999999999999999995 56679999888888654
No 50
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.63 E-value=3.3e-05 Score=67.57 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=44.3
Q ss_pred CCcCCCCCC-CCCcceeeccCCcC---cccChhhhhcCCCCCCCC-CCCceecCCC
Q 004288 345 ENHCNYCSQ-PIPAVYYQSQKEVD---VLLCPECFHEGRFVTGHS-SLDYIRVDPA 395 (763)
Q Consensus 345 ~~~C~~C~~-~~~~~~y~c~kc~d---~~LC~~CFs~G~e~~~hs-S~Df~rVd~~ 395 (763)
.+.|+.|+. ++...+|+|..|.+ |+||..||..|.+...|. .|.|+++...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 468999996 68889999999999 999999999999988995 5778777654
No 51
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.33 E-value=0.00018 Score=86.08 Aligned_cols=87 Identities=21% Similarity=0.411 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHh----hcccCCCCHHHHHHHHHh
Q 004288 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDC----QGLVDGVSPEDLTRIFRF 261 (763)
Q Consensus 186 yS~WF~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~c----rr~l~g~Dv~~i~RVh~F 261 (763)
|.+.|..+.+|..|+.+||++-.. .-..-.+|+.+||.|+..|+.||...|+...| +|.+.. |.-.|.+|++|
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~ 255 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 255 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHH
Confidence 467899999999999999998643 12246799999999999999999999997776 444454 88899999999
Q ss_pred hhhhcccccccCCC
Q 004288 262 LNHWGIINYCAAVQ 275 (763)
Q Consensus 262 Le~WGLINy~~dp~ 275 (763)
+.+|++||+++...
T Consensus 256 ~~~~~~~~~~~~~~ 269 (852)
T 2xag_A 256 LERHGLINFGIYKR 269 (852)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCcccc
Confidence 99999999887653
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.14 E-value=0.00023 Score=73.21 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC------HHHHHHHhCCCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYNDN------WNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgN------W~~IAehVGtKT~eECilHFlqL 447 (763)
...||.+|+.+||+.+++||.. |.+||+++.+||..+|..||..+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999853 99999999999999999999763
No 53
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.12 E-value=0.00012 Score=58.74 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=37.0
Q ss_pred CCcCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCC
Q 004288 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (763)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~e~~~hsS~Df~rVd~ 394 (763)
.+.|+.|+..+ ..+|+|..|.+|+||..||..|. | .|.++++..
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~----H-~H~m~~~~~ 49 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS----H-THKMVKWGL 49 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC----C-CSSEEEECS
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC----C-CCceEEecC
Confidence 36899999986 68999999999999999999875 5 577777653
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.11 E-value=0.003 Score=54.87 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHhC----CCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYN----------DNWNEIAEHVS----TKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----------gNW~~IAehVG----tKT~eECilHFlqL 447 (763)
...||.+|+++||++..... .-|+.||+.|. .+|++||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35799999999999996532 27999999985 69999999999776
No 55
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.84 E-value=0.011 Score=52.93 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHh-----CCCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHV-----STKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yGgNW~~IAehV-----GtKT~eECilHFlqL 447 (763)
..||.+|+..|++..++|+-.|--|++.. +.||-++...+|..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 479999999999764
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.40 E-value=0.0026 Score=71.42 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yGgNW~~IAehVGtKT~eECilHFlqL 447 (763)
..||.+|..++.+|+.+||.||..|+++|.+||..||+.+|..-
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp --------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 47999999999999999999999999999999999999998664
No 57
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.32 E-value=0.012 Score=62.78 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhcCCCC
Q 004288 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPME 450 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVGtKT~eECilHFlqLPIE 450 (763)
..||..+-..++.|.++|| +||..||..|++||.+|...+ .+..++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y-~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEY-NAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHH-HHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHH-HHHHHH
Confidence 4799999999999999999 999999999999999999544 455443
No 58
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.26 E-value=0.023 Score=50.52 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehVGtKT~eECilHFlqL 447 (763)
--||.+|+.-+|.+-++-| +-|..||+.+|+||++|...+|-+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3699999999999999987 5899999999999999999999876
No 59
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.11 E-value=0.017 Score=47.45 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHc--------C-CCHHHHHH-HhCCCCHHHHHHHHhc
Q 004288 404 ETWSDQETFLLLEGIEMY--------N-DNWNEIAE-HVSTKSKAQCILHFVR 446 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~y--------G-gNW~~IAe-hVGtKT~eECilHFlq 446 (763)
..+|.+|+..|++-|..| | --|+++++ .+..+|-+.|..||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 479999999999999999 3 34999999 7989999999999987
No 60
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=94.06 E-value=0.081 Score=48.48 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=58.6
Q ss_pred CCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhcccc
Q 004288 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (763)
Q Consensus 191 ~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLIN 269 (763)
+.+-+|+-|++-+-.. .=.|..|+.+.+.||.-+..+- .|+.++||..+. +|++-..||+.||.+-|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~k-ID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHT-SCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhc-ccHHHHHHHHHHHHHcCCCC
Confidence 4568899999866443 4579999999999999986543 389999998865 69999999999999999995
No 61
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=93.99 E-value=0.062 Score=47.63 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=57.9
Q ss_pred CCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhcccc
Q 004288 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (763)
Q Consensus 191 ~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLIN 269 (763)
+.+-+|+-|++-+-.. .=.|..|+.+...||.-+..+. .|+.++||..+. +|++-..||+.||.+-|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~k-iD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSS-SSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHc-ccHHHHHHHHHHHHHcCCCC
Confidence 4567889999865433 4579999999999999986543 389999998864 69999999999999999995
No 62
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.099 Score=46.11 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=58.1
Q ss_pred CCCCCCHHHHhhCCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhccc
Q 004288 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (763)
Q Consensus 191 ~~~~Ih~iEk~~lPEFF~gk~~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLI 268 (763)
+.+-+|+-|++-+-.. .=.|..|+.+.+.||.-+..+ ...|+.++||..+. +|++-..||+.||.+-|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~k-iD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLN-IDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTT-SCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHc-ccHHHHHHHHHHHHHcCCC
Confidence 4567889999855333 457999999999999998664 45688999998864 6999999999999999987
No 63
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.89 E-value=0.15 Score=45.59 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhC-----CCCHHHHHHHHhcC
Q 004288 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVS-----TKSKAQCILHFVRL 447 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgNW~~IAehVG-----tKT~eECilHFlqL 447 (763)
...||.+|+..|++..++|+-.|--|++.-. .||-|+-..||.++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999874 68999999999764
No 64
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.09 E-value=0.031 Score=47.32 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehVGtKT~eECilHFlqL 447 (763)
--||.+|+--+|...++-| .-|..||+.+ +||++|...+|.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 3699999999999999988 4899999999 79999999999886
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.72 E-value=0.11 Score=54.60 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh
Q 004288 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG-gNW~~IAehV 432 (763)
..-.|+.+|+..||-||.+|| |+|+.|..--
T Consensus 167 W~c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 167 WSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCCCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 457899999999999999999 9999998744
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.10 E-value=0.16 Score=50.36 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh
Q 004288 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG-gNW~~IAehV 432 (763)
...||.+|+..||-||.+|| |+|++|-.-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 46799999999999999999 9999987754
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.50 E-value=0.45 Score=47.15 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhC--CCCHHHHHH
Q 004288 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQCIL 442 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehVG--tKT~eECil 442 (763)
.+||..|...|+.|+.+|| +.|+.|++... .||.++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 5899999999999999999 78999999864 799877664
No 68
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.70 E-value=1 Score=37.69 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHHHhCC--CCHHHHHHHHhc
Q 004288 403 GETWSDQETFLLLEGIEMYNDN---WNEIAEHVST--KSKAQCILHFVR 446 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yGgN---W~~IAehVGt--KT~eECilHFlq 446 (763)
.-.||.+.-..+++||+..|.+ |..|-++|+. -|.+++..|.-+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4579999999999999999955 8999999984 689999888643
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=83.96 E-value=0.83 Score=49.97 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhcC
Q 004288 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRL 447 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG-gNW~~IAehVG-tKT~eECilHFlqL 447 (763)
.+||..+-..++.|.++|| +|-..||..|+ +||.+|.. .|.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~v 168 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKA 168 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHH
Confidence 4799999999999999999 99999999998 99999887 44444
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=80.98 E-value=1.5 Score=46.78 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHH------------HhCCCCHHHHHHHHhcCC
Q 004288 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAE------------HVSTKSKAQCILHFVRLP 448 (763)
Q Consensus 402 ~~~~WT~eEellLLEaIe~yG----gNW~~IAe------------hVGtKT~eECilHFlqLP 448 (763)
.+..||.+|+-.||=+|.+|| |+|++|-. ++-+||+.|+..|.-.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 356899999999999999998 78999984 456899999988876653
No 71
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.36 E-value=12 Score=31.44 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCcCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceec
Q 004288 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRV 392 (763)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~e~~~hsS~Df~rV 392 (763)
.+-|..|..+.+ ++|..|.+-.-|..||.++...-....|..++.
T Consensus 8 ~pWC~ICneDAt---lrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 8 LPWCCICNEDAT---LRCAGCDGDLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CSSCTTTCSCCC---EEETTTTSEEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCeeEEeCCCCe---EEecCCCCceehHHHHHHHccchhhhccceeec
Confidence 367999998854 899999777899999988874333333333333
No 72
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=52.91 E-value=14 Score=40.51 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHh------------CCCCHHHHHHHHhcCC
Q 004288 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHV------------STKSKAQCILHFVRLP 448 (763)
Q Consensus 403 ~~~WT~eEellLLEaIe~yG----gNW~~IAehV------------GtKT~eECilHFlqLP 448 (763)
+..||.+|+-.||=+|.+|| |+|++|-..| .+||+.|+..|...|.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 56899999999999999998 7899997775 4799999888876653
No 73
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=49.26 E-value=15 Score=29.98 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhcccc
Q 004288 216 PEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (763)
Q Consensus 216 Pe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLIN 269 (763)
|+.-.+.|..|++....+ ..+++.++.-+.+ |+.-.++.|+.+=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEe
Confidence 443345788999998775 3579999976665 678999999999999999984
No 74
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=49.15 E-value=10 Score=33.11 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.3
Q ss_pred CCcCCCCCCCCCcceeeccCCcCcccChhhhh
Q 004288 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFH 376 (763)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs 376 (763)
.+.|+.|+..+...+|+|..| +|.|-..|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT-CCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCC-CCeEcHHhcC
Confidence 478999999988899999998 6999999974
No 75
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.47 E-value=10 Score=31.43 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhcccccc
Q 004288 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 222 ~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
-|-.|++.....+...+|+.+.-..+ .+++..++.|....|+..|||.-.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 35567776655432679999965554 357899999999999999999643
No 76
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.23 E-value=20 Score=32.85 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhccccc
Q 004288 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (763)
Q Consensus 222 ~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy 270 (763)
-|-.|++....+....+|+.+.-..| .+++..++.|...+|...|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887776543789999974444 35789999999999999999963
No 77
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.75 E-value=21 Score=28.59 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 004288 408 DQETFLLLEGIEMYNDNWNEIAEHVST 434 (763)
Q Consensus 408 ~eEellLLEaIe~yGgNW~~IAehVGt 434 (763)
.-|...+.++++.++||+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457778999999999999999999993
No 78
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=42.72 E-value=12 Score=31.95 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=22.7
Q ss_pred ceeeccCCc---CcccChhhhhcCCCCCCCCCCCceecC
Q 004288 358 VYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (763)
Q Consensus 358 ~~y~c~kc~---d~~LC~~CFs~G~e~~~hsS~Df~rVd 393 (763)
+.|+|..|. ...||.+||..+ .|..|+|+...
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~----~H~gH~~~~~~ 50 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGS----IHRDHRYRMTT 50 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTS----GGGGSCEEEEE
T ss_pred EEEECccCCCCCCeeEChHHCCCC----CcCCceEEEEE
Confidence 566766653 357999999875 47777877654
No 79
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.15 E-value=36 Score=30.93 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhcccccc
Q 004288 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 218 ~Y~~~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
+.-.-|-.|++..... ...+|+.+.-..| .+++..++.|...+|...|||.--
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 4456788899988765 6689999974444 458899999999999999999644
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.75 E-value=16 Score=32.55 Aligned_cols=47 Identities=19% Similarity=0.480 Sum_probs=31.8
Q ss_pred cCCcCCCCCCCCCc-----ceeeccCCcCcccChhhhh----cCCCCCCCCCCCcee
Q 004288 344 SENHCNYCSQPIPA-----VYYQSQKEVDVLLCPECFH----EGRFVTGHSSLDYIR 391 (763)
Q Consensus 344 ~~~~C~~C~~~~~~-----~~y~c~kc~d~~LC~~CFs----~G~e~~~hsS~Df~r 391 (763)
....|.+|+.++.. +++.|.+| .|-+|-.||. +|+-.--+-+..|.+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeecc-CChhhHHHHHHHHhccCccccccCCcccc
Confidence 34689999988653 78899998 4899999983 444333333444443
No 81
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=39.45 E-value=15 Score=31.91 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=26.6
Q ss_pred CCCCCCC--cceeeccCCc---CcccChhhhhcCCCCCCCCCCCceecC
Q 004288 350 YCSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (763)
Q Consensus 350 ~C~~~~~--~~~y~c~kc~---d~~LC~~CFs~G~e~~~hsS~Df~rVd 393 (763)
.|+.... .+.|+|..|. ...||.+||..+ .|..|+|+...
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s----~H~gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPK----DHVNHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGG----GGTTSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCC----CcCCceEEEEE
Confidence 3554443 3667776663 367999999764 57788887654
No 82
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.23 E-value=20 Score=33.57 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhccccc
Q 004288 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (763)
Q Consensus 222 ~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy 270 (763)
-|-.|++....+....+|+.+.-..| .+++..++.|...+|...|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887765532689999975444 45789999999999999999953
No 83
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.91 E-value=31 Score=32.25 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhcccccc
Q 004288 220 MECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 220 ~~~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
-.-|-.|++....+ ...+|+.+.-..| .+++..++.|...+|...|||.--
T Consensus 26 T~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 34577888888776 4589999975444 457899999999999999999643
No 84
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=35.17 E-value=47 Score=30.20 Aligned_cols=57 Identities=12% Similarity=0.307 Sum_probs=42.6
Q ss_pred CCCh---HHHHHHHHHHHHHHHhCCCcee-eHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 213 DHTP---EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 213 ~kTP---e~Y~~~RN~II~~yr~nP~~yL-T~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
+++| ++|-.||+.|++-- ..|...| +..+.-..+ |+....+.+.+.-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G~-l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKGV-LQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 5555 56666777766543 5789999 777644444 67889999999999999999655
No 85
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=35.06 E-value=71 Score=25.51 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 620 FAEVETLLMRECEQVEKARQRFATERTRIV 649 (763)
Q Consensus 620 F~eLE~~L~kEreqLEr~Rq~L~~ER~~il 649 (763)
++--|.+|.+|| +||..|+.|..=|..--
T Consensus 11 i~Aqe~iLr~Er-ELEeAr~~La~iR~~kY 39 (50)
T 2qdq_A 11 IAAQEEMLRKER-ELEEARKKLAQIRQQQY 39 (50)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 344466788876 59999999998887643
No 86
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=34.50 E-value=32 Score=28.41 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 223 RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
|..|+.....++ .+|+.+.-+.+ |+....+.|....|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 677888776653 48999976665 67889999999999999999754
No 87
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.44 E-value=2.9e+02 Score=31.75 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=23.8
Q ss_pred HHHHHHHHHcC-----CCHHHHHHHhCCCCHHHHHHHHhc
Q 004288 412 FLLLEGIEMYN-----DNWNEIAEHVSTKSKAQCILHFVR 446 (763)
Q Consensus 412 llLLEaIe~yG-----gNW~~IAehVGtKT~eECilHFlq 446 (763)
..++++|..-. .-|..+++.-..+..++|+.+|-+
T Consensus 298 ~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~ 337 (592)
T 1f5n_A 298 LTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQ 337 (592)
T ss_dssp HHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665511 358888888777777888888854
No 88
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=32.61 E-value=1.3e+02 Score=25.70 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004288 589 GLAAAATKAKLFADHEEREIQRLSANIINH---QFAEVETLLMRECEQVEKARQRFATERTRIVSTRLGP 655 (763)
Q Consensus 589 ALaAAAakAklLA~~EEREI~rLva~iIe~---QF~eLE~~L~kEreqLEr~Rq~L~~ER~~il~~rl~~ 655 (763)
.||+-++|..+-+|.|.||+-..++.-|-+ .+++.+..-+.-...|++.=| -+.-+..+|.+++.+
T Consensus 2 ~~~s~~~~~~iq~DW~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~-~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 2 PLGSMSTKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLT-ILDRQVDYLEATFKT 70 (73)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 367788899999999999988877766655 234555443333333332222 233456777777754
No 89
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.88 E-value=44 Score=30.96 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhcccccc
Q 004288 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 222 ~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
-|-.|++..... ...+|+.+.-..| .+++..++.|...+|...|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 466788877664 5689999964444 357899999999999999999643
No 90
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.71 E-value=47 Score=29.43 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 215 TPe~Y~~~RN~II~~yr~nP~~yL-T~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
.-++|-.+|+.|++-- ..|...| |..+.-+.+ |+.-..+.+.+.-|+..|||-..
T Consensus 11 ~~~i~~~i~~~I~~g~-~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGS-YVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3567777777776643 4688899 887754444 56788999999999999999544
No 91
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=30.39 E-value=57 Score=29.57 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 215 TPe~Y~~~RN~II~~yr~nP~~yL-T~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
.-++|-.+|+.|+..- ..|...| +..+.-+.+ |+....+.+.+.-|+..|||-..
T Consensus 13 ~~~i~~~l~~~I~~g~-~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 13 YLQLVDRIKNEVATDV-LSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3467777777777643 5688999 888865554 57788999999999999999443
No 92
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.93 E-value=71 Score=29.40 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHhhccc----CCCCHHHHHHHHHhhhhhccccc
Q 004288 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (763)
Q Consensus 218 ~Y~~~RN~II~~yr~nP~~yLT~T~crr~l----~g~Dv~~i~RVh~FLe~WGLINy 270 (763)
++-.-|..|++....++ ..+|+.+.-..| .+++..++.|...+|..-|||.-
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45567888999876664 599999975444 35789999999999999999953
No 93
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=27.06 E-value=1.5e+02 Score=23.74 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 605 EREIQRLSANIINHQFAEVETLLMRECEQVEKARQ 639 (763)
Q Consensus 605 EREI~rLva~iIe~QF~eLE~~L~kEreqLEr~Rq 639 (763)
|.+|.|++..+ ..|++-+|.+-.+|.||+|-.+.
T Consensus 2 e~~mdrivkem-rrQl~mIdkLTtREiEQVeLL~r 35 (52)
T 2o1k_A 2 EKQMDRVVKEM-RRQLEMIDKLTTREIEQVELLKR 35 (52)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665553 45899999888999999986543
No 94
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.71 E-value=1.5e+02 Score=27.55 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 605 EREIQRLSANII------NHQFAEVETLLMRECEQVEKARQRFATERTRIVS 650 (763)
Q Consensus 605 EREI~rLva~iI------e~QF~eLE~~L~kEreqLEr~Rq~L~~ER~~il~ 650 (763)
.|+|..|+.+|= +.|.+.|. .|++|.+.+++.|++...+...++.
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~-~L~~E~~~~~~el~~~v~e~e~ll~ 120 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKID-MLQKKLVEVEDEKIEAIKKKEKLMR 120 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888887772 33777776 5577777777777777777766654
No 95
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=26.70 E-value=49 Score=30.27 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 215 TPe~Y~~~RN~II~~yr~nP~~yL-T~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
.-++|-.+|+.|+.-- ..|...| +..+.-+.+ |+.-..+.+...-|+..|||-..
T Consensus 6 ~~~i~~~i~~~I~~g~-l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGT-LSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHHTTS-SCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEe
Confidence 3467888888888653 5689999 887755554 57788999999999999999554
No 96
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=26.22 E-value=1.7e+02 Score=29.63 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=31.8
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004288 607 EIQRLSANI--INHQFAEVETLLMRECEQVE----KARQRFATERTRIVS 650 (763)
Q Consensus 607 EI~rLva~i--Ie~QF~eLE~~L~kEreqLE----r~Rq~L~~ER~~il~ 650 (763)
++++.+..| |+.++++||....+|..+|| +.++-|+..|..|+.
T Consensus 27 ~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~ 76 (225)
T 2e50_A 27 EQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIA 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHh
Confidence 444444444 34468888888888888776 468889999998884
No 97
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.05 E-value=60 Score=30.10 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHhhc----ccCCCCHHHHHHHHHhhhhhccccc
Q 004288 222 CRNHIVAKYMDNPEKRLIVSDCQG----LVDGVSPEDLTRIFRFLNHWGIINY 270 (763)
Q Consensus 222 ~RN~II~~yr~nP~~yLT~T~crr----~l~g~Dv~~i~RVh~FLe~WGLINy 270 (763)
-|..|++....++ .+|+.+.-. ...+++..++.|...+|..-|||.-
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4566777666654 789888533 3344789999999999999999954
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=26.05 E-value=73 Score=33.33 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhC--CCCHHH
Q 004288 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQ 439 (763)
Q Consensus 404 ~~WT~eEellLLEaIe~yG---gNW~~IAehVG--tKT~eE 439 (763)
..||+.|...|+.++.+|| +.|+.|++--. .|+.+.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~ 44 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEK 44 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHH
Confidence 5799999999999999999 68999987642 466543
No 99
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=25.54 E-value=5e+02 Score=25.67 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 581 KVKAAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQFAEVETLLMR 629 (763)
Q Consensus 581 ~vk~Aaa~ALaAAAakAklLA~~EEREI~rLva~iIe~QF~eLE~~L~k 629 (763)
.++.-.+.=+.-|-.||..+-..-|.|-+.....+|+..=.+++...++
T Consensus 16 ~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek 64 (233)
T 4efa_E 16 ELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKS 64 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777766666666666666766644444444433
No 100
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.45 E-value=1.6e+02 Score=28.23 Aligned_cols=45 Identities=16% Similarity=0.399 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 605 EREIQRLSANII------NHQFAEVETLLMRECEQVEKARQRFATERTRIVS 650 (763)
Q Consensus 605 EREI~rLva~iI------e~QF~eLE~~L~kEreqLEr~Rq~L~~ER~~il~ 650 (763)
.|+|..||.+|= +.|.+.|. .|++|.+.+++.|++...+...++.
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~-~Le~E~~~~~~el~~~v~eae~ll~ 120 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKID-MLQKKLVEVEDEKIEAIKKKEKLLR 120 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888887772 33777776 5567777777777777777666654
No 101
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=24.83 E-value=1.1e+02 Score=30.31 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 004288 616 INHQFAEVETLLMRECEQVEK----ARQRFATERTRIVS 650 (763)
Q Consensus 616 Ie~QF~eLE~~L~kEreqLEr----~Rq~L~~ER~~il~ 650 (763)
|+.++++||....+|..+||+ .+|-|+..|..|+.
T Consensus 8 iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 8 IQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 566788999888888888765 58889999999987
No 102
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.78 E-value=2e+02 Score=22.92 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 617 NHQFAEVETLLMRECEQVEKARQRF 641 (763)
Q Consensus 617 e~QF~eLE~~L~kEreqLEr~Rq~L 641 (763)
..+.++|...|.+-|.+|++.+.+|
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999887
No 103
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=23.73 E-value=1.6e+02 Score=30.43 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004288 604 EEREIQRLSANII--NHQFAEVETLLMRECEQVEKARQRFATERTRIVS 650 (763)
Q Consensus 604 EEREI~rLva~iI--e~QF~eLE~~L~kEreqLEr~Rq~L~~ER~~il~ 650 (763)
|+.+++.++..+- +.+|.+++..|++ +..+.++-||..|..|+.
T Consensus 7 ~~~~l~~~~~~l~~lq~e~~~~~~ele~---ky~~~~~Ply~kR~eII~ 52 (264)
T 2zd7_A 7 NENEHAKAFLGLAKCEEEVDAIEREVEL---YRLNKMKPVYEKRDAYID 52 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHh
Confidence 5666666655543 3345555544432 234567889999999985
No 104
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=23.57 E-value=65 Score=27.67 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHhC
Q 004288 405 TWSDQETFLLLEGIEMYNDNWNEIAEHVS 433 (763)
Q Consensus 405 ~WT~eEellLLEaIe~yGgNW~~IAehVG 433 (763)
.+.+-|...|.++++.++||+.+.|+.+|
T Consensus 37 ~l~~~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 34556778889999999999999999999
No 105
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=23.42 E-value=32 Score=34.38 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=47.6
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 213 ~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
+..+.+|-.||+.|+... ..|...|+..+.-..+ ||--..|.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g~-l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGS-LPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTSS-SCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhCC-CCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 556789999999999864 5789999988865554 67888999999999999999654
No 106
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.49 E-value=1e+02 Score=25.76 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=33.3
Q ss_pred CCcccCCCC-CCCChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhccccc
Q 004288 203 VPHFFSGKS-PDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (763)
Q Consensus 203 lPEFF~gk~-~~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy 270 (763)
|-+||.+.. ..-|+..+.+|.+++.+ .+-++.+.+++.+ ..|..+++|+-.+|+|..
T Consensus 40 ~~~~~~~~~l~~it~~~i~~~~~~l~~------~~~~s~~Ti~~~~-----~~lr~~~~~a~~~~~i~~ 97 (112)
T 2key_A 40 FKEYCEGLQFHELTEDFLRDYLIYMKK------TLCNADSTAQRNL-----STIKIYVSAAIKKGYMEN 97 (112)
T ss_dssp TTTSCSCCCTTTCCHHHHHHHHHHHHH------TSCCCHHHHHHHH-----HHHHHHHHHHHHTTSCCS
T ss_pred HHHHcCCCCHHHcCHHHHHHHHHHHHH------ccCcchhhHHHHH-----HHHHHHHHHHHHCCCccc
Confidence 445554322 23366666666555432 1224555555444 358889999999999964
No 107
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=22.06 E-value=46 Score=30.14 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHhhcccCCCCHHHHHHHHHhhhhhcccccc
Q 004288 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (763)
Q Consensus 213 ~kTPe~Y~~~RN~II~~yr~nP~~yL-T~T~crr~l~g~Dv~~i~RVh~FLe~WGLINy~ 271 (763)
...-++|-.+|..|+.-- ..|...| +..+.-+.+ |+....+.+.+.-|+..|||-..
T Consensus 11 ~~~~~i~~~l~~~I~~g~-~~~G~~lPs~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 11 AIYLQIADRICDDILLGQ-YEEEGRIPSVREYASIV-EVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp -CTTHHHHHHHHHHHTTS-SCBTSEECCTTTTTTCC--CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhCC-CCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEE
Confidence 456789999999998754 5688999 787755444 56778899999999999999544
No 108
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=21.81 E-value=1.1e+02 Score=31.56 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.8
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhcC
Q 004288 424 NWNEIAEHVSTKSKAQCILHFVRL 447 (763)
Q Consensus 424 NW~~IAehVGtKT~eECilHFlqL 447 (763)
-|.+||++.-++|......+|..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 599999999999999999999765
No 109
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=21.53 E-value=58 Score=34.77 Aligned_cols=61 Identities=16% Similarity=0.434 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHhhccc--CC-CCHHHHHHHHHhhhhhcccccccCCC
Q 004288 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DG-VSPEDLTRIFRFLNHWGIINYCAAVQ 275 (763)
Q Consensus 213 ~kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l--~g-~Dv~~i~RVh~FLe~WGLINy~~dp~ 275 (763)
.+-|..|+.+|+.+.+. +. ...|||.+++++.. .| .|-..+..+..||...|.|-|.-+..
T Consensus 12 ~~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d~~ 75 (332)
T 3dpt_A 12 TPLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEALD 75 (332)
T ss_dssp -----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTTTC
T ss_pred CccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecCCc
Confidence 46799999999999886 33 35899999976542 45 33346889999999999998876643
No 110
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=20.68 E-value=1.1e+02 Score=29.02 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=33.2
Q ss_pred CCcCCCCCCCCCcceeeccCCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHH
Q 004288 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLL 415 (763)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CFs~G~e~~~hsS~Df~rVd~~~~~~~~~~~~WT~eEellLL 415 (763)
-..|.-|+.. .+.+.+.. -.+.+|.+|-.--+..+.| .+++-- .-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~---s~VrSl--------~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP---HRVKSI--------SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC---CCEEET--------TTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc---ceeeec--------CCCCCCHHHHHHHH
Confidence 3578888864 34444443 3577999997644433334 344421 12469998765554
No 111
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=20.33 E-value=1.1e+02 Score=27.23 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHHHHHhCCCceeeHHHhhcccCCCCHHHHHHHHHhhhhhccc
Q 004288 214 HTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (763)
Q Consensus 214 kTPe~Y~~~RN~II~~yr~nP~~yLT~T~crr~l~g~Dv~~i~RVh~FLe~WGLI 268 (763)
-.++.|-++++.|.+....+ ..+|+.+.|..+ |+--.-..=|.+||++-|+.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~l-g~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQEC--GSTCAADFRDRL-GVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHH-TSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHC--CCccHHHHHHHH-CCcHHHHHHHHHHHhhcCCe
Confidence 35899999999999988886 679999999987 64444455699999999875
Done!