Your job contains 1 sequence.
>004289
MDDLDFFSSVGGMDLGNDSSYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTLL
LRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS
GKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ
KYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQ
QNSPPNKPTNESAGAFAHGSKSSRITDTCIVSVVPSAVKAPPTESAFHLGISSSVPSLVR
MESFGTQSALAEPGHLQGQLKFNIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGANINI
KPPEIIDSRHFSRVSSNGHSIGFTEGVFGSASNGSCPRPGHQYSWNNSYCPQLPGMMWPN
SPSLVSGIFNTYSPTRVHGLPRAPSHMVNTVLPIGSHHVGSAPTVDPSLWERQHAYVAES
PEASGFHLGSHGSMRISNNSLHSVEFVSHNIFPCVGGNGMDMPLPSKNSVFQSHHQRSMM
FSGRGQTIPLMNSFDPPNERARNRRNEGAVNQADKKQYELDIDRILRGEDNRTTLMIKNI
PNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKK
WEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMG
VNFRTRPGKARSVIHEENHHGSPPNVEDLSNGDAPSGSAKESD
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004289
(763 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2182885 - symbol:ML4 "MEI2-like 4" species:370... 1545 1.4e-158 1
TAIR|locus:2156166 - symbol:ML1 "MEI2-like protein 1" spe... 1523 3.0e-156 1
TAIR|locus:2013583 - symbol:ML5 "MEI2-like protein 5" spe... 701 5.2e-134 2
TAIR|locus:2117706 - symbol:ML3 "MEI2-like 3" species:370... 672 7.3e-131 3
TAIR|locus:2045605 - symbol:ML2 "MEI2-like 2" species:370... 592 1.7e-106 2
TAIR|locus:2090350 - symbol:TEL1 "terminal EAR1-like 1" s... 266 7.9e-50 4
POMBASE|SPAC27D7.03c - symbol:mei2 "RNA-binding protein i... 393 6.2e-44 3
TAIR|locus:2008530 - symbol:TEL2 "terminal EAR1-like 2" s... 282 1.5e-43 3
DICTYBASE|DDB_G0279255 - symbol:DDB_G0279255 species:4468... 251 7.8e-34 2
GENEDB_PFALCIPARUM|PFF1125c - symbol:PFF1125c "RNA-bindin... 299 1.8e-24 2
UNIPROTKB|C6KT70 - symbol:PFF1125c "RNA-binding protein m... 299 1.8e-24 2
DICTYBASE|DDB_G0276005 - symbol:DDB_G0276005 species:4468... 188 1.9e-22 3
DICTYBASE|DDB_G0268266 - symbol:DDB_G0268266 "RNA recogni... 245 2.3e-16 2
DICTYBASE|DDB_G0286611 - symbol:DDB_G0286611 "sulphate an... 246 6.7e-16 2
TAIR|locus:2029647 - symbol:MCT1 "AT1G37140" species:3702... 197 1.4e-14 1
ASPGD|ASPL0000003579 - symbol:AN6494 species:162425 "Emer... 202 7.8e-13 2
ZFIN|ZDB-GENE-071005-2 - symbol:srsf3b "serine/arginine-r... 128 3.4e-07 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 123 2.8e-06 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 123 2.8e-06 3
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 129 5.9e-06 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 126 6.9e-06 2
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 114 1.1e-05 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 134 1.3e-05 1
POMBASE|SPBC8D2.09c - symbol:msl1 "U2 snRNP-associated pr... 112 1.8e-05 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 121 2.1e-05 2
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 134 2.2e-05 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 135 2.3e-05 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 135 3.2e-05 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 135 3.2e-05 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 127 3.4e-05 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 134 4.1e-05 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 134 4.1e-05 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 123 5.1e-05 2
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 115 6.7e-05 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 132 6.9e-05 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 130 9.3e-05 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 130 9.4e-05 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 130 9.4e-05 1
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 114 9.6e-05 1
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 114 9.6e-05 1
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 114 9.6e-05 1
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 114 9.6e-05 1
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 114 9.6e-05 1
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 114 9.6e-05 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 102 0.00011 3
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 102 0.00011 3
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 130 0.00011 2
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 129 0.00014 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 129 0.00014 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 129 0.00014 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 124 0.00018 1
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 127 0.00018 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 124 0.00018 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 127 0.00021 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 126 0.00023 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 117 0.00023 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 127 0.00024 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 115 0.00026 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 115 0.00028 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 115 0.00029 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 115 0.00030 2
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 121 0.00034 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 115 0.00038 2
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 111 0.00038 2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 115 0.00038 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 115 0.00038 2
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 120 0.00038 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 121 0.00042 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 126 0.00044 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 124 0.00051 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 126 0.00052 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 120 0.00060 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 123 0.00064 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 119 0.00064 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 113 0.00066 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 113 0.00066 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 113 0.00066 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 113 0.00066 2
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 124 0.00067 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 119 0.00076 1
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 122 0.00084 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 118 0.00086 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 118 0.00088 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 118 0.00088 1
>TAIR|locus:2182885 [details] [associations]
symbol:ML4 "MEI2-like 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
[GO:0048507 "meristem development" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL163652 GO:GO:0003723
eggNOG:NOG262869 HOGENOM:HOG000030212 ProtClustDB:CLSN2687061
GO:GO:0048507 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AK226960 IPI:IPI00536095 PIR:T48500 RefSeq:NP_196346.1
UniGene:At.5054 ProteinModelPortal:Q9LYN7 SMR:Q9LYN7 PaxDb:Q9LYN7
PRIDE:Q9LYN7 EnsemblPlants:AT5G07290.1 GeneID:830620
KEGG:ath:AT5G07290 TAIR:At5g07290 InParanoid:Q9LYN7 OMA:HEDIRIT
PhylomeDB:Q9LYN7 Genevestigator:Q9LYN7 Uniprot:Q9LYN7
Length = 907
Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
Identities = 361/766 (47%), Positives = 453/766 (59%)
Query: 1 MDDLDFFSSVGGMDLGNDS-SYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTL 59
+DD D FSSVGGM+L D S V+Q+ + G N + EH E SR L
Sbjct: 164 LDDCDLFSSVGGMELDGDVFSSVSQRDGK---------RG-SNVSTVAEHPQGEILSRIL 213
Query: 60 LLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR 119
+R ++S+IED EL LF+Q+GDVR + A K+ GF+ +SYYDIRAA+ A ++L +L R
Sbjct: 214 FVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLR 273
Query: 120 SGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIH 179
KLDI YSIPK+NP E ++G L V NLDSS+SN+ELH IF YGEI+E+R T +
Sbjct: 274 GRKLDIRYSIPKENPKENS-SEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENS 332
Query: 180 QKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQ 239
Q YIEF+D R A+ AL+ LN +AG+Q+KL P+ G P+ ++ G
Sbjct: 333 QVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEG------TSFWPQFASDD-GEGG 385
Query: 240 QQNSPPNKPTNESAGAFAHGSKSSRITDT-CIXXXXXXXXXXXXTESAFH--LGISSSVP 296
N ++ G G +S D I + H L + +P
Sbjct: 386 LPKMAFNNLSSAHMGRHFPGILASTSIDGGSIRGMHNSVGSPMNSFIERHQSLDVPIGLP 445
Query: 297 SLVRMESFGTQSALAEPGHLQGQLKFNIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGA 356
R+ S L E G+ K I+S P+ HPH P+ D G SS T
Sbjct: 446 PSARVISASKPVGLQEFGNPFDNSKTGIQSMPNLHPH-FPDYLDNFASGSPYKSSTTFSE 504
Query: 357 NINIKPPEIIDSRHFSRVSSNGHSIGFTEGVFGSASNGSCPRPGHQYSWNNSYCPQ---L 413
++ + + S V G GF GV GS N R G+ W+NS Q
Sbjct: 505 MVS-DGQKANEGFMMSNVRGVGVD-GFNGGVIGSPINQGSHR-GNLNLWSNSNSQQHNQS 561
Query: 414 PGMMWPNSPSLVSGIFNTYSPTRVHGLPRAPSHMVNTVLPIGSHHVGSAPTVDPSLWERQ 473
GMMWPNSPS V+G+ + P V RA MVN HH+GSAP ++ W+R+
Sbjct: 562 SGMMWPNSPSRVNGVPSQRIPP-VTAFSRASPLMVNMASSPVHHHIGSAPVLNSPFWDRR 620
Query: 474 HAYVAESPEASGFHLGSHGSMRISNNS-LHSVEFVSHNIFPCVGGNGMDMPLPSKNSVFQ 532
AYVAESPE+SGFHLGS GSM +S H ++F SH +F VGGN M+ SKN+V +
Sbjct: 621 QAYVAESPESSGFHLGSPGSMGFPGSSPSHPMDFGSHKVFSHVGGNRMEAN--SKNAVLR 678
Query: 533 SHHQRSMMFSGRGQTIPLMNSFDPPXXXXXXXX---XXXXXXQADKKQYELDIDRILRGE 589
S Q +F+GR + + SFD P A+KK YELD+DRILRGE
Sbjct: 679 SSRQMPHLFTGRSPMLSVSGSFDLPNERYRNLSHRRSESNSSNAEKKLYELDVDRILRGE 738
Query: 590 DNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQI 649
D+RTTLMIKNIPNKYTSKMLLAAIDE KGTYDF+YLPIDFKNKCNVGYAFIN+ +P I
Sbjct: 739 DSRTTLMIKNIPNKYTSKMLLAAIDEYCKGTYDFLYLPIDFKNKCNVGYAFINLIEPENI 798
Query: 650 VPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGP 709
VPFY++FNGKKWEKFNSEKVASLAY RIQGK+ALIAHFQNSSLMNEDKRCRPILF+T GP
Sbjct: 799 VPFYKAFNGKKWEKFNSEKVASLAYGRIQGKSALIAHFQNSSLMNEDKRCRPILFHTAGP 858
Query: 710 NAGDQVPFPMGVNFRTRPGKAR--SVIHEENHHGSPPNVEDLSNGD 753
NAGDQ PFPMG N R+RPGK R S+ + N S N ++ +NG+
Sbjct: 859 NAGDQEPFPMGSNIRSRPGKHRTNSIENYTNFSSSSDNRDEPANGN 904
>TAIR|locus:2156166 [details] [associations]
symbol:ML1 "MEI2-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048507 "meristem development" evidence=IGI] [GO:0045836
"positive regulation of meiosis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:D86122
EMBL:AB022212 EMBL:AY062536 EMBL:BT008806 EMBL:AK316683
IPI:IPI00533512 RefSeq:NP_001032122.1 RefSeq:NP_568946.1
UniGene:At.340 ProteinModelPortal:Q8W4I9 SMR:Q8W4I9 IntAct:Q8W4I9
PaxDb:Q8W4I9 PRIDE:Q8W4I9 EnsemblPlants:AT5G61960.1
EnsemblPlants:AT5G61960.2 GeneID:836317 KEGG:ath:AT5G61960
TAIR:At5g61960 eggNOG:NOG262869 HOGENOM:HOG000030212
InParanoid:Q8W4I9 OMA:HEDIHIT PhylomeDB:Q8W4I9
ProtClustDB:CLSN2687061 Genevestigator:Q8W4I9 GO:GO:0048507
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 Uniprot:Q8W4I9
Length = 915
Score = 1523 (541.2 bits), Expect = 3.0e-156, P = 3.0e-156
Identities = 353/738 (47%), Positives = 447/738 (60%)
Query: 31 IGFSNHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRAS 90
+ N E G N +V GE E PSRTLL+ I+SN+ED ELK LFEQ+GD++ + A
Sbjct: 193 VSHRNGERGG-NNSV-GELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTAC 250
Query: 91 KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLD 150
K+ GF+ +SY DIRAA+NA ++LQNKL R KLDI YSI K+NPS+K+ ++G L+V NLD
Sbjct: 251 KNRGFIMVSYCDIRAAQNAARALQNKLLRGTKLDIRYSISKENPSQKDTSKGALLVNNLD 310
Query: 151 SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210
SS+SN EL+ + YGE+KEIR T Q YIEF+D RAA AAL LN +AGK+++L
Sbjct: 311 SSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQL 370
Query: 211 EPSHLRGLR---KCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAFAHGSKSSRITD 267
P++ G R +C AN L + + + + P S+ + GS R+
Sbjct: 371 VPTYPEGTRYTSQCAANDTEGCLPKTSYSNTSSGHIGRHFPGMISSTSSDGGSM--RVIH 428
Query: 268 TCIXXXXXXXXXXXXTESAFHLGISSSVPSLVRMESFGTQSALAEPGHLQGQLKFNIRST 327
I + S +G S + + G Q E GH I+S
Sbjct: 429 NSIGSPVNSFIERHRSLS-IPIGFPPSANGISASKPVGLQ----EHGHHFDNSNMGIQSM 483
Query: 328 PSFHPHSLPECHDGLNKGVRCNSSG-TKGANINIKPPEIIDSRHFSRVSSNGHSIGFTEG 386
P+ HPHS E D G SS ++ + K E + V GF+ G
Sbjct: 484 PNLHPHSFSEYVDNFANGSPYTSSAFSEMVSDGSKANEGFMIHNVRGVE------GFSGG 537
Query: 387 VFGSASNGSCPRPGHQYSWNNSYCPQLP--GMMWPNSPSLVSGIFNTYSPTRVHGLPRAP 444
GS + S RP + +S +N+ Q P GMMWPNSPS ++ I P V RAP
Sbjct: 538 GIGSPMHQSSRRPINLWSNSNTQ-QQNPSSGMMWPNSPSHINSIPTQRPPVTVFS--RAP 594
Query: 445 SHMVNTVLPIGSHHVGSAPTVDPSLWERQHAYVAESPEASGFHLGSHGSMRISNNS-LHS 503
MVN HH+GSAP ++ W+R+ AYVAES E+SGFH+GSHGSM I +S H
Sbjct: 595 PIMVNMASSPVHHHIGSAPVLNSPFWDRRQAYVAESLESSGFHIGSHGSMGIPGSSPSHP 654
Query: 504 VEFVSHNIFPCVGGNGMDMPLPSKNSVFQSHHQRSMMFSGRGQTIPLMNSFDPPXXXXXX 563
++ SH F VGGN MD+ S+N+V +S Q S +F GR + SFD P
Sbjct: 655 MDIGSHKTFS-VGGNRMDVN--SQNAVLRSPQQLSHLFPGRSPMGSMPGSFDSPNERYRN 711
Query: 564 XX---XXXXXXQADKKQYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGT 620
ADKK YELD+DRILRGED RTTLMIKNIPNKYTSKMLL+AIDE KGT
Sbjct: 712 LSHRRSESSSSNADKKLYELDVDRILRGEDRRTTLMIKNIPNKYTSKMLLSAIDEHCKGT 771
Query: 621 YDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGK 680
YDF+YLPIDFKNKCNVGYAFIN+ +P +IVPF+++FNGKKWEKFNSEKVA+L YARIQGK
Sbjct: 772 YDFLYLPIDFKNKCNVGYAFINLIEPEKIVPFFKAFNGKKWEKFNSEKVATLTYARIQGK 831
Query: 681 AALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNFRTRPGKARSVIHEENHH 740
ALIAHFQNSSLMNEDKRCRPILF+TDGPNAGDQ PFPMG N R+RPGK RS + +
Sbjct: 832 TALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNIRSRPGKPRSSSIDNYNS 891
Query: 741 GSPPNVEDLSNGDAPSGS 758
S +V + + + P+G+
Sbjct: 892 FSISSVSE-NREETPNGT 908
Score = 544 (196.6 bits), Expect = 8.8e-52, P = 8.8e-52
Identities = 143/355 (40%), Positives = 193/355 (54%)
Query: 1 MDDLDFFSSVGGMDLGNDS-SYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTL 59
+D+ D FSSVGGM+L D S V+ + N E G N +V GE E PSRTL
Sbjct: 171 LDEFDLFSSVGGMELDGDIFSSVSHR---------NGERGG-NNSV-GELNRGEIPSRTL 219
Query: 60 LLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR 119
L+ I+SN+ED ELK LFEQ+GD++ + A K+ GF+ +SY DIRAA+NA ++LQNKL R
Sbjct: 220 LVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLR 279
Query: 120 SGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIH 179
KLDI YSI K+NPS+K+ ++G L+V NLDSS+SN EL+ + YGE+KEIR T
Sbjct: 280 GTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNS 339
Query: 180 QKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR---KCLANQLPPELEQEECG 236
Q YIEF+D RAA AAL LN +AGK+++L P++ G R +C AN L +
Sbjct: 340 QIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEGTRYTSQCAANDTEGCLPKTSYS 399
Query: 237 SYQQQNSPPNKPTNESAGAFAHGSKSSRITDTCIXXXXXXXXXXXXTESAFHLGISSSVP 296
+ + + P S+ + GS R+ I + S +G S
Sbjct: 400 NTSSGHIGRHFPGMISSTSSDGGSM--RVIHNSIGSPVNSFIERHRSLS-IPIGFPPSAN 456
Query: 297 SLVRMESFGTQSALAEPGHLQGQLKFNIRSTPSFHPHSLPECHDGLNKGVRCNSS 351
+ + G Q E GH I+S P+ HPHS E D G SS
Sbjct: 457 GISASKPVGLQ----EHGHHFDNSNMGIQSMPNLHPHSFSEYVDNFANGSPYTSS 507
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 701 (251.8 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 156/266 (58%), Positives = 182/266 (68%)
Query: 2 DDLDFFSSVGGMDLGND-----SSYVAQKKSEICIGFSN-HELGVCNGA--VAGEHLNDE 53
DD D F S GGM+L D S + S +G + + + NGA VAGEH E
Sbjct: 105 DDYDLFGSGGGMELDADFRDNLSMSGPPRLSLSSLGGNAIPQFNIPNGAGTVAGEHPYGE 164
Query: 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL 113
HPSRTL +R INSN+EDSEL ALFEQYGD+RT Y KH GFV ISYYDIR+AR AM+SL
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
Query: 114 QNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 173
QNK R KLDIH+SIPKDNPSEK++NQGTLVVFNLD S+SND+LH IFG +GEIKEIRE
Sbjct: 225 QNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRE 284
Query: 174 TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQE 233
TP K H K++EFYD R AEAAL+ LN IAGK+IK+EPS G R+ L QL +LE +
Sbjct: 285 TPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARRSLMLQLNQDLEND 344
Query: 234 EC------GSYQQQNSPP---NKPTN 250
+ GS NSPP N P N
Sbjct: 345 DLHYLPMIGS-PMANSPPMQGNWPLN 369
Score = 633 (227.9 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 161/381 (42%), Positives = 223/381 (58%)
Query: 342 LNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSSNGHSIGFTEGVFGSASNGSCPRPGH 401
+ +G + S+G + ++ + P++ D+++ +S +G I G+ +GS
Sbjct: 416 IGRG-QIGSNGFQQSSHLFQEPKM-DNKYTGNLSPSGPLISNGGGI--ETLSGS------ 465
Query: 402 QYSWNNSYCPQLPGM--MWPNSPSLVSGIFNTYSPTRV-HGLPRAPSHMVNTVLPIGSHH 458
++ W + P +W S S + +F+T RV +P H N H
Sbjct: 466 EFLWGSPNARSEPSSSSVWSTS-STGNPLFST----RVDRSVPFPHQHQ-NQSRSHHHFH 519
Query: 459 VGSAPTVDPSLWERQHAYVAESPEASGFHLGSHGSMRISNNSLHSVEFVSHNIFPCVGGN 518
VGSAP+ P E+ +V ES + + F + + G +S L+ F S + +
Sbjct: 520 VGSAPSGVPL--EKHFGFVPESSKDALF-MNTVGLQGMSGMGLNGGSFSSKMANNGIINS 576
Query: 519 GMDMPLPSKNSVFQSHHQRSMMFSGRGQTIP--LMNSFDPPXXXXXXXXXXXXXXQAD-K 575
G + S + S MF G P + FD Q + +
Sbjct: 577 GSMAENGFSSYRMMSSPRFSPMFLSSGLN-PGRFASGFDSLYENGRPRRVENNSNQVESR 635
Query: 576 KQYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCN 635
KQ++LD+++IL GED+RTTLMIKNIPNKYTSKMLLAAIDE+++GTY+F+YLPIDFKNKCN
Sbjct: 636 KQFQLDLEKILNGEDSRTTLMIKNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKNKCN 695
Query: 636 VGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNE 695
VGYAFINM +P I+PFY++FNGKKWEKFNSEKVASLAYARIQGK+ALIAHFQNSSLMNE
Sbjct: 696 VGYAFINMLNPELIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNE 755
Query: 696 DKRCRPILFNT-DGPNAGDQV 715
D RCRPI+F+T + P + +QV
Sbjct: 756 DMRCRPIIFDTPNNPESVEQV 776
Score = 41 (19.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 718 PMGVNFRTRPGKARSVIHEENHHGSPPNVEDLSN 751
PM ++ PG+ S +G P VE+ SN
Sbjct: 597 PMFLSSGLNPGRFASGFDSLYENGRPRRVENNSN 630
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 672 (241.6 bits), Expect = 7.3e-131, Sum P(3) = 7.3e-131
Identities = 142/254 (55%), Positives = 179/254 (70%)
Query: 1 MDDLDFFSSVGGMDLGNDSSYVAQKKSEICIGFSNHEL-GVC--N------GAVAGEHLN 51
++D D F S GG++L D Y + K +GF++ + V N G++AGEH
Sbjct: 102 LEDYDLFGSGGGLELETDP-YDSLNKGFSRMGFADSNVDNVMPQNIFQNGVGSIAGEHPY 160
Query: 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMK 111
EHPSRTL +R INSN+EDSEL+ALFEQYG +RT Y A K GFV +SY DIRA+R AM+
Sbjct: 161 GEHPSRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMR 220
Query: 112 SLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI 171
+LQ KL + KLDIH+SIPKDNPSEK++NQGTLVVFNL SVSN +L +IFGVYGEIKEI
Sbjct: 221 ALQGKLLKKRKLDIHFSIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEI 280
Query: 172 RETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELE 231
RETP K H K++EF+D R+A+AAL+ LN IAGK+IKLE S G R+ + Q+ PELE
Sbjct: 281 RETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELE 340
Query: 232 QEECGSYQQQNSPP 245
Q++ SY P
Sbjct: 341 QDDSYSYLNHVESP 354
Score = 592 (213.5 bits), Expect = 7.3e-131, Sum P(3) = 7.3e-131
Identities = 118/184 (64%), Positives = 138/184 (75%)
Query: 526 SKNSVFQSHHQRSMMFSGRGQTI-PL--MNSFDPPXXXXXXXXXXXXXXQADKK-QYELD 581
S N S +RS +F+G G + P M S D P QAD K Q++LD
Sbjct: 542 SPNFKMLSAPRRSQLFTGNGSYLWPAATMVSIDDPLEDGSNQQFDSNGNQADIKIQFQLD 601
Query: 582 IDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFI 641
+ +I+RGED RTTLMIKNIPNKYT MLLAAIDE++ GTYDF+YLPIDFKNKCNVGYAFI
Sbjct: 602 LSKIMRGEDPRTTLMIKNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKNKCNVGYAFI 661
Query: 642 NMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRP 701
NM P + Y++FNGKKW+KFNSEKVASLAYARIQGKAALIAHFQNSSLMNED+RC+P
Sbjct: 662 NMVSPKFTIALYEAFNGKKWDKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDRRCQP 721
Query: 702 ILFN 705
I+F+
Sbjct: 722 IVFD 725
Score = 55 (24.4 bits), Expect = 7.3e-131, Sum P(3) = 7.3e-131
Identities = 47/182 (25%), Positives = 72/182 (39%)
Query: 296 PSLVRMESFGTQSALAEPGHLQGQLKFNIRSTPSFHP---HSLPECHDGLN--KGVRCNS 350
P L + +S+ + + P L N R++P HP S L+ K +R
Sbjct: 337 PELEQDDSYSYLNHVESP--LASSPIGNWRNSPIDHPLQSFSKSPIFGNLSPTKNIRYPE 394
Query: 351 SGTKGANINIKPPEIIDSRHFSRV-----SSNGHSIGFTEGVFGSASN-GSCPRPGHQYS 404
K A++N + R FS + SS+ ++ F + GS G S
Sbjct: 395 FSMKTASVNNDQ----EGRRFSHLDHLFSSSSYNNASHKASTFQQPQSFGSVSSFGSLNS 450
Query: 405 WNNSYCPQLPG--MMWPNSPSLVSGIFNTYSPTRVHGLPRAPSHMVNTVLPIGSHHVGSA 462
+ S+ L G +W SPS + N +S R + R P N L HH+GSA
Sbjct: 451 -HPSHVETLSGSEFLW-GSPSSSAWPVNPFSSNRENH--RFPYSAQNGSLH-QLHHIGSA 505
Query: 463 PT 464
P+
Sbjct: 506 PS 507
Score = 42 (19.8 bits), Expect = 1.7e-129, Sum P(3) = 1.7e-129
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 288 HLGISSS--VPSLVRMESFGTQSALAEPGHLQGQLKFNIRSTPSFHPHSLP 336
H+G + S P S G+ + G++ Q S+P+F S P
Sbjct: 501 HIGSAPSGFFPRSPETSSMGSVAFRGASGNMNAQRNLRETSSPNFKMLSAP 551
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 592 (213.5 bits), Expect = 1.7e-106, Sum P(2) = 1.7e-106
Identities = 135/280 (48%), Positives = 175/280 (62%)
Query: 1 MDDLDFFSSVGGMDL---GNDSSYVAQKKSEICI-GFSN----HELGVCNGAVAGEHLND 52
+++ D F + GGM+L D+ V +I G +N + G V+ EH N
Sbjct: 134 LEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAFVPRKRPNTAGRVSVEHPNG 193
Query: 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKS 112
EHPSRTL +R INS++EDSEL ALFE +G++R+ Y A K GFV ISYYDIRAA AM++
Sbjct: 194 EHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRA 253
Query: 113 LQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR 172
LQN L R LDIH+SIPK+NPSEK++NQGTLV+FN+D++VSNDEL +FG YGEI+EIR
Sbjct: 254 LQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR 313
Query: 173 ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQ 232
ETP + ++IE+YD R AE AL+ LN I GK IKLE S G R+ +LE+
Sbjct: 314 ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLER 373
Query: 233 EECGSYQQQ------NSPPNKPTNESAGAFAHGSKSSRIT 266
E ++ Q NSPP N G+ GS S T
Sbjct: 374 TEVTNFYNQVGSHVANSPPG---NWPIGSPVKGSPSHAFT 410
Score = 483 (175.1 bits), Expect = 1.7e-106, Sum P(2) = 1.7e-106
Identities = 127/304 (41%), Positives = 162/304 (53%)
Query: 416 MMWPNSPSLVSGIFNTYSPTRV-HGLPRAPSHMVNTVLPIGSHHVGSAPTVDPSLWERQH 474
M +P + S +T P V HG P A ++L HHVGSAP+ + +
Sbjct: 516 MNYPGYTGVSSSSSSTERPFTVRHGFPFAERQA--SLLGKYQHHVGSAPS-SIHFNTQMN 572
Query: 475 AYVAESPEAS-GFHLGSHGSMRISNNSLHSVEFVSHNIFPCVGGNGMDMPLPSKNSVFQS 533
Y SPE GF S + + NS H N+ G+ +P S F
Sbjct: 573 CYTG-SPEIPLGF---SDMGINRNYNSAHG----KANL-------GVSLPGNSSEQDFTG 617
Query: 534 HHQRSMMFSGRGQTIPLMNSFDPPXXXXXXXXXXXXXXQ---ADKKQYELDIDRILRGED 590
SM G + L + P Q D +Y +D+DRI G++
Sbjct: 618 FGMSSMPTVPFGGSRGLQSVRPEPFAEQGRIHNHESHNQNQFIDGGRYHIDLDRIASGDE 677
Query: 591 NRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIV 650
RTTL+IKNIPNKYT KML+A IDE+HKG YDF+ LP DFKNKCN+G+AFINM P IV
Sbjct: 678 IRTTLIIKNIPNKYTYKMLVAEIDEKHKGDYDFLCLPTDFKNKCNMGHAFINMVSPLHIV 737
Query: 651 PFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRP-ILFNTDGP 709
PF Q+FNGK WEKFNS KVASLAYA IQGK+AL ++ Q S M E K+ P + ++ DG
Sbjct: 738 PFQQTFNGKIWEKFNSGKVASLAYAEIQGKSALASYMQTPSSMKEQKQLFPEVSYHDDGQ 797
Query: 710 NAGD 713
+A D
Sbjct: 798 DAND 801
Score = 38 (18.4 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 293 SSVPSLVRMESFGTQSALAEPGHLQGQL 320
SS+P++ S G QS EP QG++
Sbjct: 621 SSMPTVPFGGSRGLQSVRPEPFAEQGRI 648
>TAIR|locus:2090350 [details] [associations]
symbol:TEL1 "terminal EAR1-like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
IPI:IPI00518069 RefSeq:NP_189242.1 UniGene:At.53499
ProteinModelPortal:F4JBE2 SMR:F4JBE2 PRIDE:F4JBE2
EnsemblPlants:AT3G26120.1 GeneID:822211 KEGG:ath:AT3G26120
OMA:NSRKICQ ArrayExpress:F4JBE2 Uniprot:F4JBE2
Length = 615
Score = 266 (98.7 bits), Expect = 7.9e-50, Sum P(4) = 7.9e-50
Identities = 47/103 (45%), Positives = 68/103 (66%)
Query: 620 TYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQG 679
+YDF+YLP+DF NKCNVGY F+NMT P FY++F+G++WE FNS K+ + YAR+QG
Sbjct: 455 SYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQITYARVQG 514
Query: 680 KAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVN 722
L HF++S E + P++F+ P G Q+ P+ +N
Sbjct: 515 LEDLKEHFKSSKFPCEAELYLPVVFSP--PRDGKQLTEPVSIN 555
Score = 227 (85.0 bits), Expect = 7.9e-50, Sum P(4) = 7.9e-50
Identities = 46/104 (44%), Positives = 63/104 (60%)
Query: 127 YSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFY 186
+ +P + NQGTLV+FNLD VS+ L IF VYG IKE+RETP K HQ+++EFY
Sbjct: 198 FVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFY 257
Query: 187 DTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPEL 230
D R A A +N + I GKQ+ +E S G++ + P+L
Sbjct: 258 DVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIKNRFRSSRQPQL 301
Score = 98 (39.6 bits), Expect = 7.9e-50, Sum P(4) = 7.9e-50
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 42 NGAVAGEHLN--DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTIS 99
NG A + L P+R+L L + ++ +S ++ E YGDVR G VT+
Sbjct: 89 NGVSAAQRLPLPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVH 148
Query: 100 YYDIRAARNAMKSL 113
+YDIR A+ A++ +
Sbjct: 149 FYDIRDAKRAVREV 162
Score = 94 (38.1 bits), Expect = 7.9e-50, Sum P(4) = 7.9e-50
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 590 DNRTTLMIKNIPNKYTSKMLLAAIDE 615
D RTTLMIKNIPNKY+ K+LL +D+
Sbjct: 405 DPRTTLMIKNIPNKYSQKLLLDMLDK 430
Score = 74 (31.1 bits), Expect = 6.9e-28, Sum P(3) = 6.9e-28
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRA--SKHCGFVTISYYDIRAARNAMKSLQN 115
TL++ ++ + L+ +F+ YG ++ KH FV +YD+R A A +
Sbjct: 214 TLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFV--EFYDVRDAARAFDRMNG 271
Query: 116 KLTRSGKLDIHYSIP 130
K ++ I +S P
Sbjct: 272 KEIGGKQVVIEFSRP 286
Score = 61 (26.5 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYI--EFYDTRAAEAALRELNS 200
+L + ++ V+ + VYG+++ ++ ++I + + FYD R A+ A+RE+
Sbjct: 107 SLSLISVPRDVTESTVRRDLEVYGDVRGVQM--ERISEGIVTVHFYDIRDAKRAVREVCG 164
Query: 201 RYI 203
R++
Sbjct: 165 RHM 167
Score = 39 (18.8 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 232 QEECGSYQQQN----SPPNKPTNESAGAFAHG 259
+E CG + QQ S + P+ SA F G
Sbjct: 160 REVCGRHMQQQARGGSVWSSPSTSSARGFVSG 191
>POMBASE|SPAC27D7.03c [details] [associations]
symbol:mei2 "RNA-binding protein involved in meiosis
Mei2" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=IDA] [GO:0004860 "protein kinase inhibitor
activity" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007127 "meiosis I" evidence=TAS] [GO:0033620
"Mei2 nuclear dot" evidence=IDA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IDA] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC27D7.03c GO:GO:0005829
EMBL:CU329670 GO:GO:0006950 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0004860 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0007127
eggNOG:NOG262869 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:X07180 PIR:S00391 RefSeq:NP_594609.1 ProteinModelPortal:P08965
STRING:P08965 EnsemblFungi:SPAC27D7.03c.1 GeneID:2542080
KEGG:spo:SPAC27D7.03c OMA:IMETESP OrthoDB:EOG41ZJK1
NextBio:20803153 GermOnline:SPAC27D7.03c GO:GO:0033620
GO:GO:0034064 Uniprot:P08965
Length = 750
Score = 393 (143.4 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 81/165 (49%), Positives = 106/165 (64%)
Query: 580 LDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYA 639
+D +I G D RTT+MIKNIPNK+T +ML ID +KGTYDF+YL IDF NKCNVGYA
Sbjct: 584 VDYAQIASGIDTRTTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYA 643
Query: 640 FINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRC 699
FIN +P I+ F ++ G +W F+SEK+ ++YA IQGK LI F+NS +M+E+
Sbjct: 644 FINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENPAY 703
Query: 700 RPILFNTDGPNAGDQVPFPMGVNFRTRPGKARSVIHEENHHGSPP 744
RP +F + GPN G + PFP N R K RS+ + PP
Sbjct: 704 RPKIFVSHGPNRGMEEPFPAPNNARR---KLRSIASAQQIGLFPP 745
Score = 138 (53.6 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 50/166 (30%), Positives = 81/166 (48%)
Query: 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHC-GFVTISYYDIRAARNAMKS 112
H SR L + + + + L LF + GDV+ +S G ++++DIR A A KS
Sbjct: 192 HASRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKS 251
Query: 113 LQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVF----------NLD--SSVSNDELHH 160
L+++ + +L +++ + + +K INQG + F N+ S +S +L
Sbjct: 252 LRSQRFFNDRL-LYFQFCQRSSIQKMINQGATIQFLDDNEGQLLLNMQGGSVLSILQLQS 310
Query: 161 IFGVYGEI---KEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI 203
I +G + K +R Q + Q EFYDTR A AL EL+ R I
Sbjct: 311 ILQTFGPLLIMKPLRS--QNVSQIICEFYDTRDASFALDELDGRII 354
Score = 52 (23.4 bits), Expect = 5.6e-35, Sum P(3) = 5.6e-35
Identities = 21/111 (18%), Positives = 49/111 (44%)
Query: 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA-SKHCGFVTISYYDIRAARNAM 110
D++ + LL + S + +L+++ + +G + S++ + +YD R A A+
Sbjct: 287 DDNEGQLLLNMQGGSVLSILQLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFAL 346
Query: 111 KSLQNKLTRSGKLDIHY------SIPKDNPSEKEINQGTLVVFNLDSSVSN 155
L ++ + L + Y S+ + S + +G + N +S +N
Sbjct: 347 DELDGRIIHNCCLQVAYYDAMADSVSTSSASSLSVPRGFSGMLNNNSEWNN 397
Score = 48 (22.0 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 390 SASNGSCPRPGHQYSWNNSYCPQLPGMMWPNSPSL-VSGIFNTYSPTRVHGLPRAPSHMV 448
+A++ + R G Y +N++ +P +SP+ SG ++ S + V R PS
Sbjct: 409 TAASCAVSRIGSSYGMSNNF-GSVPLGRTESSPAWGTSGYYDVSSTSPVAPSDRNPSRQY 467
Query: 449 NTV 451
N++
Sbjct: 468 NSI 470
Score = 37 (18.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 468 SLWERQHAYVAESPEASG 485
S W++ + ++ESP +G
Sbjct: 134 STWQQNISVLSESPPQNG 151
>TAIR|locus:2008530 [details] [associations]
symbol:TEL2 "terminal EAR1-like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
EMBL:AC008113 HSSP:P09012 EMBL:DQ446408 IPI:IPI00539717
RefSeq:NP_176943.1 UniGene:At.52426 ProteinModelPortal:Q9FXE0
SMR:Q9FXE0 PRIDE:Q9FXE0 EnsemblPlants:AT1G67770.1 GeneID:843102
KEGG:ath:AT1G67770 TAIR:At1g67770 eggNOG:NOG320075
HOGENOM:HOG000090865 InParanoid:Q9FXE0 OMA:NEIRYRH PhylomeDB:Q9FXE0
ProtClustDB:CLSN2914477 Genevestigator:Q9FXE0 Uniprot:Q9FXE0
Length = 527
Score = 282 (104.3 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 64/149 (42%), Positives = 85/149 (57%)
Query: 590 DNRTTLMIKNIPNKYTSKMLLAAID------------ERHK---GTYDFIYLPIDFKNKC 634
D RTT+MIKNIPNKYT K+LL +D E +K +YDF+YLPIDF NK
Sbjct: 334 DGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKS 393
Query: 635 NVGYAFINMTDPSQIVPFYQSFNGKKWEKFNS-EKVASLAYARIQGKAALIAHFQNSSLM 693
NVGY F+NMT P + Y+SF+ + W F + K+ + YARIQG +L HF+N L
Sbjct: 394 NVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNVRLA 453
Query: 694 N-EDKRCRPILFNTDGPNAGDQVPFPMGV 721
E P++F+ P G P P+ +
Sbjct: 454 GVEIDEYMPVVFSP--PRDGRLSPEPVAI 480
Score = 222 (83.2 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 44/97 (45%), Positives = 65/97 (67%)
Query: 126 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEF 185
H+ P+ N + NQG+LV+ NL+ +VS+ L HIF VYGE+K++RETP K Q+++EF
Sbjct: 167 HFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEF 226
Query: 186 YDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCL 222
+D R A ALR +N + I+GK + ++ S GL K L
Sbjct: 227 FDVRDAAKALRVMNGKVISGKPMVIQFSRPGGLTKKL 263
Score = 73 (30.8 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 14/73 (19%), Positives = 37/73 (50%)
Query: 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 114
P+R ++L ++ + + ++ L+ E +G+VR H G V +Y++ ++ A ++
Sbjct: 78 PTRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRAFNEIR 137
Query: 115 NKLTRSGKLDIHY 127
+ + + H+
Sbjct: 138 YRHMQQQEQQQHF 150
Score = 73 (30.8 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL 117
+L++ + + S L+ +F+ YG+V+ + ++D+R A A++ + K+
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKV 243
Query: 118 TRSGK-LDIHYSIP 130
SGK + I +S P
Sbjct: 244 I-SGKPMVIQFSRP 256
Score = 46 (21.3 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 10/62 (16%), Positives = 33/62 (53%)
Query: 144 LVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYI--EFYDTRAAEAALRELNSR 201
+++ + ++V+ L ++GE++ ++ ++ H+ + FY+ ++ A E+ R
Sbjct: 82 VMLLQVPATVTETSLRRDMELFGEVRGVQM--ERAHEGIVIFHFYNLINSQRAFNEIRYR 139
Query: 202 YI 203
++
Sbjct: 140 HM 141
>DICTYBASE|DDB_G0279255 [details] [associations]
symbol:DDB_G0279255 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0279255
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201
Pfam:PF04059 EMBL:AAFI02000030 RefSeq:XP_641754.1
ProteinModelPortal:Q54X23 EnsemblProtists:DDB0205680 GeneID:8621952
KEGG:ddi:DDB_G0279255 InParanoid:Q54X23 ProtClustDB:CLSZ2846744
Uniprot:Q54X23
Length = 1698
Score = 251 (93.4 bits), Expect = 7.8e-34, Sum P(2) = 7.8e-34
Identities = 51/134 (38%), Positives = 79/134 (58%)
Query: 583 DRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFIN 642
+ I+ G D RT+LMI+NIPN+ T + L A IDE K TYDF+ +P+D K + GYAFIN
Sbjct: 1564 ENIISGVDTRTSLMIRNIPNRLTQQTLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1623
Query: 643 MTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPI 702
D + F+Q F +W+ +N +K+ + YA IQG+ AL+ Q+ E + +
Sbjct: 1624 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL---QSIKKKQEKLQLKKG 1680
Query: 703 LFNTDGPNAGDQVP 716
+ + D +A ++ P
Sbjct: 1681 ITSNDENSASEEKP 1694
Score = 212 (79.7 bits), Expect = 7.8e-34, Sum P(2) = 7.8e-34
Identities = 60/172 (34%), Positives = 93/172 (54%)
Query: 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCG-FVTISYYDIRAARNAMK 111
E PSR L ++ I I + K+ E G + + Y + K+ G F+ ISY DIR + A
Sbjct: 911 ESPSRYLFIKSIRG-INHNLFKSKIESIGQINSVYGSIKNKGGFLIISYLDIRHSIEAFN 969
Query: 112 SLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVV-FNLDSSVSNDELHHIFGVYGEIKE 170
LQ K+ KL ++Y KD + +++GTL+ F+ D + N + + F +GEIK+
Sbjct: 970 ELQ-KVDFGSKLIVNYCFDKD----QTVDKGTLIATFSNDDQIKN--IVNDFSKFGEIKD 1022
Query: 171 IRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCL 222
IR++P K QK++EFY+ + A+ LNS +IK+ SH G K L
Sbjct: 1023 IRDSPNKPLQKFVEFYNINSTLKAINNLNS-----DKIKVAFSHHGGSSKDL 1069
Score = 65 (27.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 84 RTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGT 143
+ +Y G ++ ++I RN+ NK S HY P S +N
Sbjct: 269 QNYYSPKNSNGSGALNNHEIEQKRNSYDGFGNKTLFSSSTSTHYQSPSSLSSAGSLNSPK 328
Query: 144 LVVFNLDSSVSN 155
V L SS +N
Sbjct: 329 SQVSRLSSSDNN 340
Score = 45 (20.9 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 35/152 (23%), Positives = 56/152 (36%)
Query: 412 QLPGMMWPNSPSLVSGIF-NTYSPTRVHGLPRAPSHMV----NTVLPIGSHHVGSAPTVD 466
QL NS L S N YSP +G +H + N+ G+ + S+ T
Sbjct: 251 QLQQQRLSNSQQLYSSPNQNYYSPKNSNGSGALNNHEIEQKRNSYDGFGNKTLFSSSTST 310
Query: 467 --PSLWERQHAYVAESPEASGFHLGSHGSMRISNNSLHSVEFVSHNIFPCVGGNGMDMPL 524
S A SP++ L S + ISN S + +++ + NI + +
Sbjct: 311 HYQSPSSLSSAGSLNSPKSQVSRLSSSDNNIISNYSNNLIDYKNINIRSSQDNSYSSIGS 370
Query: 525 PSKNSVFQSHHQRSMMFSGRGQTIPLMNSFDP 556
+ N+ HQ+ + Q PL P
Sbjct: 371 SNDNTFNNKQHQQIQGYQQPLQQ-PLQQPLQP 401
Score = 37 (18.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 128 SIPKDNPSEKEIN 140
SI D+PS K+IN
Sbjct: 674 SIISDDPSFKQIN 686
>GENEDB_PFALCIPARUM|PFF1125c [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0045836 "positive
regulation of meiosis" evidence=ISS] InterPro:IPR012677
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836
InterPro:IPR007201 Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 299 (110.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 58/113 (51%), Positives = 75/113 (66%)
Query: 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPF 652
TT+M++NIPNKYT ML+ ++E KG YDF YLPIDF+NKCNVGYAFIN P F
Sbjct: 290 TTVMLRNIPNKYTQNMLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELF 349
Query: 653 YQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNED-KRCRPILF 704
+ FN K F S KV S+ + R+QG A I H++NS++M + +PILF
Sbjct: 350 IKFFNNYKLNAFKSNKVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILF 402
Score = 39 (18.8 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 147 FNLDSSVSNDELHHIFGV 164
FN +S ++N L+H F V
Sbjct: 168 FNNNSYITNFNLNHNFSV 185
>UNIPROTKB|C6KT70 [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003723
"RNA binding" evidence=ISS] [GO:0045836 "positive regulation of
meiosis" evidence=ISS] InterPro:IPR012677 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836 InterPro:IPR007201
Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 299 (110.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 58/113 (51%), Positives = 75/113 (66%)
Query: 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPF 652
TT+M++NIPNKYT ML+ ++E KG YDF YLPIDF+NKCNVGYAFIN P F
Sbjct: 290 TTVMLRNIPNKYTQNMLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELF 349
Query: 653 YQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNED-KRCRPILF 704
+ FN K F S KV S+ + R+QG A I H++NS++M + +PILF
Sbjct: 350 IKFFNNYKLNAFKSNKVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILF 402
Score = 39 (18.8 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 147 FNLDSSVSNDELHHIFGV 164
FN +S ++N L+H F V
Sbjct: 168 FNNNSYITNFNLNHNFSV 185
>DICTYBASE|DDB_G0276005 [details] [associations]
symbol:DDB_G0276005 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0276005
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_643375.1 ProteinModelPortal:Q552K7
EnsemblProtists:DDB0217746 GeneID:8620259 KEGG:ddi:DDB_G0276005
eggNOG:NOG269978 InParanoid:Q552K7 OMA:NNMNHPN
ProtClustDB:CLSZ2846869 Uniprot:Q552K7
Length = 1984
Score = 188 (71.2 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 65/189 (34%), Positives = 95/189 (50%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCG--FVTISYYDIR-------AA 106
SR LL+ K N+NI+ L F+++G++++ Y+ G V ISY+DIR A
Sbjct: 1417 SRNLLI-KTNANIDLRNLICKFKEHGEIKSVYQNITRSGTMHVVISYFDIRNSVFALSAN 1475
Query: 107 RNAMKSLQNKLTRSG-------KLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVS-NDEL 158
N+ N T +L I+Y + KD P I+ GTLV+FN D+ S N
Sbjct: 1476 CNSSSCSNNSSTNKNNNDIINDRLSIYYCLNKD-P----IDHGTLVLFNFDAVFSTNSNT 1530
Query: 159 HHIFGV---YGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215
H + +G+I+EIRE K K+IEFYD R A AA+ L + GK++ + S L
Sbjct: 1531 HMLTSALNQFGQIREIRED-LKNKLKFIEFYDIRDAIAAVNALKKQVFFGKKLLVRLSVL 1589
Query: 216 RGLRKCLAN 224
+K N
Sbjct: 1590 DHSKKSQNN 1598
Score = 179 (68.1 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 40/120 (33%), Positives = 67/120 (55%)
Query: 580 LDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYA 639
+++D I G + +TT+MIKNIP K+T + L + ++H YD++Y+P D K + GY
Sbjct: 1778 INLDDIRSGVNQKTTVMIKNIPYKFTH-LNLDTMFKKHNLAYDYLYMPTDPITKAHYGYT 1836
Query: 640 FINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQG---KAALIAHFQNSSLMNED 696
F+N + I+ +N KK N K + YAR+QG +A +A+ N++ N +
Sbjct: 1837 FVNFVNYQDIIQLCSLYNNKKLG--NHPKFCEITYARLQGFPQTSATVANNNNNNNNNNN 1894
Score = 78 (32.5 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 45/198 (22%), Positives = 85/198 (42%)
Query: 65 NSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124
NSN L + Q+G +R K+ I +YDIR A A+ +L+ ++ KL
Sbjct: 1527 NSNTH--MLTSALNQFGQIREIREDLKN-KLKFIEFYDIRDAIAAVNALKKQVFFGKKLL 1583
Query: 125 IHYSIPKDNPSEKEINQGTLVVFNLDSSVSN----D-ELHHIFGVYGEIKEIRETP---Q 176
+ S+ D+ S+K N T VFN+ S+ D +L++ + + + P +
Sbjct: 1584 VRLSV-LDH-SKKSQNNTT--VFNVSDQFSDLVCCDFDLNYTIKI-NDNDDFENQPLSSR 1638
Query: 177 KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECG 236
+HQ+ + + + + + + K + S G R Q P+ +Q++
Sbjct: 1639 SLHQQQQQQQHQQHQQNQQQNQHQQQQNIKYNQSSNSSQSGSRSSQQPQQQPQQQQQQQP 1698
Query: 237 SYQQQNSPPNKPTNESAG 254
QQQ + + N++ G
Sbjct: 1699 QQQQQQNQKSNYKNKNFG 1716
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/91 (23%), Positives = 41/91 (45%)
Query: 323 NIRSTPSFHPHSLPECHDG-----LNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSSN 377
N S PS +S P ++G L + ++SG+ I P + +S++ + ++N
Sbjct: 318 NPNSNPSSFTNSNPNSYNGFEEDQLKDSPKSSASGSPTVTIGFSPSK--NSKNTNSNNNN 375
Query: 378 GHSIGFTEGVFGSASNGSCPRPGHQYSWNNS 408
++I T + SN + + S +NS
Sbjct: 376 NNNIN-TNKNSNNNSNSNSNSNSNSNSNSNS 405
Score = 41 (19.5 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 211 EPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAFAHGSKSSR 264
+P R L + Q + +Q + + QQ N N+S+ + GS+SS+
Sbjct: 1633 QPLSSRSLHQQQQQQQHQQHQQNQQQNQHQQQQ--NIKYNQSSNSSQSGSRSSQ 1684
Score = 41 (19.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 323 NIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSSNGHSIG 382
N S P +P+S P + N NS+ N + ++ DS S S +IG
Sbjct: 302 NTDSKPKSNPNSNPNSNPNSNPSSFTNSN-PNSYN-GFEEDQLKDSPKSSASGSPTVTIG 359
Query: 383 FT 384
F+
Sbjct: 360 FS 361
Score = 41 (19.5 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 169 KEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 218
K+ E +K +K E +T E +E+ + I K+ + EP ++ L
Sbjct: 1226 KDQEEEKEKEKEKVCEQQNTITYEETEKEIVVKKIEDKKQETEPFNIDDL 1275
Score = 40 (19.1 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 229 ELEQEECGSYQQQNSPPNK-PTNE 251
E E+EE Y++ N K TN+
Sbjct: 1374 ESEEEEIADYEESNEIEQKLDTNQ 1397
Score = 39 (18.8 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 303 SFGTQSALAEPGHLQGQLKFNIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGANINIKP 362
SF + + G + QLK + +S+ S P N NS+ NIN
Sbjct: 325 SFTNSNPNSYNGFEEDQLKDSPKSSASGSPTVTIGFSPSKNSK-NTNSNNNNNNNINTNK 383
Query: 363 PEIIDSRHFSRVSSNGHS 380
+S S +SN +S
Sbjct: 384 NSNNNSNSNSNSNSNSNS 401
Score = 39 (18.8 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 339 HDGLNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSSNGHSIGFTEGVFGSASNGS 395
++G N N++G NIN I+S + + +++ ++ G + + SN +
Sbjct: 422 NNGNNNNSNSNNNGNNSNNINNNSNININSNNNNN-NNHSNANGNNSNSYNNNSNSN 477
Score = 37 (18.1 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 242 NSPPNKPTNESAGAFAHGSKSS 263
NS PN N + +F + + +S
Sbjct: 312 NSNPNSNPNSNPSSFTNSNPNS 333
>DICTYBASE|DDB_G0268266 [details] [associations]
symbol:DDB_G0268266 "RNA recognition motif-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030587
"sorocarp development" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0268266 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0003676 GO:GO:0030587
eggNOG:NOG321849 RefSeq:XP_647083.1 ProteinModelPortal:Q55GV1
EnsemblProtists:DDB0202068 GeneID:8615887 KEGG:ddi:DDB_G0268266
InParanoid:Q55GV1 OMA:FSIPKEE Uniprot:Q55GV1
Length = 689
Score = 245 (91.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 76/242 (31%), Positives = 116/242 (47%)
Query: 17 NDSSYVAQKKSEICIGFSNHELGVC----NGAVAGEHLNDEHPSRTLLLRKINSNIEDSE 72
N+++ KK + F+NH+ + NG V GE E RTL +R + +I++ +
Sbjct: 145 NNNNNNNNKKVILPKNFTNHDGPILIKDNNGKVIGEK---EKLGRTLFVRNVAYSIKEVD 201
Query: 73 LKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132
+ A+F + G+++ + + G ISYYD+R A A +Q +DIH+SIPK+
Sbjct: 202 IPAIFAKIGEIKKTFSLLESRGIAFISYYDLRDAERAKNEIQGTTLDGRSIDIHFSIPKE 261
Query: 133 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAE 192
S E N G + V N D V +E+ F YG+IK++ E + Q +EFYD RA E
Sbjct: 262 E-SGLEDNAGFIHVKNRD--VPLNEVRIFFSSYGDIKDVTEFNRD--QVLVEFYDLRACE 316
Query: 193 AALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNES 252
AL E N +KL L L ++P ++ E G Q N+ N N
Sbjct: 317 KALAEANG-------VKLGDQTL-DLDYYTPKEIPAIIDAYE-GRKQNNNNSNNSNNNNR 367
Query: 253 AG 254
G
Sbjct: 368 GG 369
Score = 40 (19.1 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 621 YDFIYLPIDFKNKCNVGYAFINMTDPS 647
Y+ I P + N N +FIN ++PS
Sbjct: 624 YNNISNPSNNFNNNNYNNSFINYSEPS 650
>DICTYBASE|DDB_G0286611 [details] [associations]
symbol:DDB_G0286611 "sulphate anion transporter
family protein" species:44689 "Dictyostelium discoideum"
[GO:0055085 "transmembrane transport" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0015116 "sulfate transmembrane transporter
activity" evidence=IEA] [GO:0008272 "sulfate transport"
evidence=IEA] [GO:0008271 "secondary active sulfate transmembrane
transporter activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001902
InterPro:IPR011547 InterPro:IPR012677 InterPro:IPR018045
Pfam:PF00916 PROSITE:PS01130 SMART:SM00360 dictyBase:DDB_G0286611
GO:GO:0016021 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000089 GO:GO:0008272 InterPro:IPR007201 Pfam:PF04059
GO:GO:0008271 Gene3D:3.30.750.24 InterPro:IPR002645 SUPFAM:SSF52091
PROSITE:PS50801 Pfam:PF01740 eggNOG:COG0659 TIGRFAMs:TIGR00815
RefSeq:XP_001733021.1 ProteinModelPortal:B0G157
EnsemblProtists:DDB0237857 GeneID:8625706 KEGG:ddi:DDB_G0286611
OMA:ILFRIEN ProtClustDB:CLSZ2846953 Uniprot:B0G157
Length = 1221
Score = 246 (91.7 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 46/102 (45%), Positives = 66/102 (64%)
Query: 583 DRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFIN 642
+ I+ G D RT+LMI+NIPN+ T + L A IDE K TYDF+ +P+D K + GYAFIN
Sbjct: 1087 ENIISGVDTRTSLMIRNIPNRLTQQNLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1146
Query: 643 MTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALI 684
D + F+Q F +W+ +N +K+ + YA IQG+ AL+
Sbjct: 1147 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL 1188
Score = 42 (19.8 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 246 NKPTNESAGAFAHGSKSS 263
N PTN S FA SS
Sbjct: 899 NSPTNSSLNLFAESQYSS 916
Score = 40 (19.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 26/125 (20%), Positives = 52/125 (41%)
Query: 148 NLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207
N+++S++N+ ++ ++ ++ Q+ Q+ Y+ A E ++ E N +
Sbjct: 973 NMNNSINNNNNNNNNNNNNNQQQQQQQQQQQQQQQKHQYNQTAYEVSILE-NEQ------ 1025
Query: 208 IKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAFAHGSKSSR--I 265
+LE R RK +L E++Q++ Q N TN K + +
Sbjct: 1026 -ELEQLERR--RK----ELESEIQQQKAQQKNQNNGTLRNSTNSKGKKELKEPKEPKEPV 1078
Query: 266 TDTCI 270
TCI
Sbjct: 1079 DPTCI 1083
>TAIR|locus:2029647 [details] [associations]
symbol:MCT1 "AT1G37140" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012677 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR007201 Pfam:PF04059 EMBL:DQ056481 IPI:IPI00521142
RefSeq:NP_174902.1 UniGene:At.51989 ProteinModelPortal:Q4PT05
SMR:Q4PT05 EnsemblPlants:AT1G37140.1 GeneID:840631
KEGG:ath:AT1G37140 TAIR:At1g37140 HOGENOM:HOG000124801
InParanoid:Q4PT05 OMA:ICEITVA PhylomeDB:Q4PT05
ProtClustDB:CLSN2682263 ArrayExpress:Q4PT05 Genevestigator:Q4PT05
Uniprot:Q4PT05
Length = 233
Score = 197 (74.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 41/105 (39%), Positives = 59/105 (56%)
Query: 592 RTTLMIKNIPNKYTSKMLLAAIDE---RH--KGTYDFIYLPIDFKNKCNVGYAFINMTDP 646
RT++M+KNIPN LL +D +H K +YDF+YLP+DF + N+GYAF+N T
Sbjct: 83 RTSVMVKNIPNCLGRMDLLRILDNHCRKHNEKSSYDFLYLPMDFGKRANLGYAFVNFTSS 142
Query: 647 SQIVPFYQSFNGKKWEKFN-SEKVASLAYARIQGKAALIAHFQNS 690
F + F W+ +K+ + A+ QGK L HF+NS
Sbjct: 143 LAAERFRREFENFSWDNIGFRKKICEITVAKYQGKEELTRHFRNS 187
>ASPGD|ASPL0000003579 [details] [associations]
symbol:AN6494 species:162425 "Emericella nidulans"
[GO:0045836 "positive regulation of meiosis" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IEA] [GO:0033620 "Mei2 nuclear dot" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004860 "protein kinase
inhibitor activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001301 InterPro:IPR007201 Pfam:PF04059
EnsemblFungi:CADANIAT00007260 HOGENOM:HOG000200448 OMA:VDETSHG
Uniprot:C8V0B7
Length = 669
Score = 202 (76.2 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 65/170 (38%), Positives = 85/170 (50%)
Query: 577 QYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNV 636
Q +D++RI G D RTT+M++NIPNK ML A +DE G YDF+YL I
Sbjct: 438 QNAVDVERIRLGLDVRTTIMLRNIPNKIDQTMLKAIVDETSHGKYDFMYLRIVL------ 491
Query: 637 GYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAY----ARIQGKAALIAHFQNSSL 692
A ++ T S+IV Y + K E+ + AS A QGK L+ F+NSS+
Sbjct: 492 --AMLSST--SKIVYTYVIQSLSKHEQ-GAHGTASTAIRSQKCHTQGKDCLVQKFRNSSV 546
Query: 693 MNEDKRCRPILFNTD-GPNAGDQVPFPMGVNFRTRPGKARSVIHEENHHG 741
M E RP +F+T GP AG + FP N P K R I H G
Sbjct: 547 MLEHPSFRPKIFHTGTGPLAGKEDRFPGPDN----PSKMRRSIENAEHVG 592
Score = 51 (23.0 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 154 SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 199
S + L FG + + + I + +IE+++TR AE + LN
Sbjct: 285 SLETLAMTFGDIQAFTPLLSSQENISEFHIEYFNTRDAENVMTTLN 330
Score = 51 (23.0 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 64 INSNIEDSELKALFEQYGDVRTF---YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 120
+N + L+ L +GD++ F + ++ I Y++ R A N M +L
Sbjct: 277 LNQHTVARSLETLAMTFGDIQAFTPLLSSQENISEFHIEYFNTRDAENVMTTLNGTSVDD 336
Query: 121 GKLDIHYSIPKDNPSE 136
+++ + P D SE
Sbjct: 337 CVVEVSFFKP-DVESE 351
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 128 (50.1 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/118 (26%), Positives = 59/118 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 13 VGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCG 72
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAFAHGSKSS 263
++++E S+ G ++ + PP + Y++++SPP + + +F+ S
Sbjct: 73 CRVRVELSN--GEKRTRSRGPPPSWNRRPRDDYRRRSSPPQRRRSPRRRSFSRSRSRS 128
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 123 (48.4 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 39/174 (22%), Positives = 80/174 (45%)
Query: 51 NDEHPS---RTLLLRKINSNIEDSELKALFEQYGDVRTFY--RAS---KHCGFVTISYYD 102
N HPS +L + +N ++ ++ L +F G V + R S K G+ ++Y++
Sbjct: 7 NMMHPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 103 IRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIF 162
+ A A+ +L + + +S +D PS ++ G + V NLD S+ N L F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTF 124
Query: 163 GVYGEIKEIRETPQKIHQK----YIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212
++G I + + + ++ + D +A+ A+ ++N + K + + P
Sbjct: 125 SMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 95 (38.5 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRA 105
E ++ L ++ ++ ++ L+ LF YG++ + +K+ F I+Y D +
Sbjct: 184 ERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAES 243
Query: 106 ARNAMKSLQNK-LTRSGKLDIHYSIPK 131
A+NAM +L K +T G++D Y PK
Sbjct: 244 AKNAMDNLNGKKITDDGQIDETYD-PK 269
Score = 64 (27.6 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 133 NPSEKEINQGT-LVVFNLDSSVSNDELHHIFGVYGEI---KEIR-ETPQKIHQKYIEFYD 187
N K +QG L + NLD + + L +F +G I K +R E Q ++ F
Sbjct: 440 NVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFAS 499
Query: 188 TRAAEAALRELNSRYIAGKQI 208
A A+ E++ + I GK +
Sbjct: 500 QEEANKAVTEMHLKIINGKPL 520
Score = 59 (25.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPF 652
T L +KN P+ T L + G + + +D KN+ + FIN D
Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPY--GEITSMIVKMDNKNR---KFCFINYADAESAKNA 247
Query: 653 YQSFNGKK 660
+ NGKK
Sbjct: 248 MDNLNGKK 255
Score = 58 (25.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 22/100 (22%), Positives = 40/100 (40%)
Query: 648 QIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTD 707
Q VP + NG++ N+ + + QG L+ N+++ N + R + N
Sbjct: 656 QYVPNALAQNGQQQPNLNAAGQHNAQQLQQQGNNQLL----NNNMRNMNNRANRNMGNLG 711
Query: 708 GPNAGDQVPFPMGVNFRTRPGKARSVIHEENHHGSPPNVE 747
N Q+P +N + A S ++ NH P +
Sbjct: 712 NMNNQKQLP----LNINNKQQNAASQANQMNHQAQPQGAQ 747
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 123 (48.4 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 39/174 (22%), Positives = 80/174 (45%)
Query: 51 NDEHPS---RTLLLRKINSNIEDSELKALFEQYGDVRTFY--RAS---KHCGFVTISYYD 102
N HPS +L + +N ++ ++ L +F G V + R S K G+ ++Y++
Sbjct: 7 NMMHPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 103 IRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIF 162
+ A A+ +L + + +S +D PS ++ G + V NLD S+ N L F
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTF 124
Query: 163 GVYGEIKEIRETPQKIHQK----YIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212
++G I + + + ++ + D +A+ A+ ++N + K + + P
Sbjct: 125 SMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 95 (38.5 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRA 105
E ++ L ++ ++ ++ L+ LF YG++ + +K+ F I+Y D +
Sbjct: 184 ERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAES 243
Query: 106 ARNAMKSLQNK-LTRSGKLDIHYSIPK 131
A+NAM +L K +T G++D Y PK
Sbjct: 244 AKNAMDNLNGKKITDDGQIDETYD-PK 269
Score = 64 (27.6 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 133 NPSEKEINQGT-LVVFNLDSSVSNDELHHIFGVYGEI---KEIR-ETPQKIHQKYIEFYD 187
N K +QG L + NLD + + L +F +G I K +R E Q ++ F
Sbjct: 440 NVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFAS 499
Query: 188 TRAAEAALRELNSRYIAGKQI 208
A A+ E++ + I GK +
Sbjct: 500 QEEANKAVTEMHLKIINGKPL 520
Score = 59 (25.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPF 652
T L +KN P+ T L + G + + +D KN+ + FIN D
Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPY--GEITSMIVKMDNKNR---KFCFINYADAESAKNA 247
Query: 653 YQSFNGKK 660
+ NGKK
Sbjct: 248 MDNLNGKK 255
Score = 58 (25.5 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 22/100 (22%), Positives = 40/100 (40%)
Query: 648 QIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTD 707
Q VP + NG++ N+ + + QG L+ N+++ N + R + N
Sbjct: 656 QYVPNALAQNGQQQPNLNAAGQHNAQQLQQQGNNQLL----NNNMRNMNNRANRNMGNLG 711
Query: 708 GPNAGDQVPFPMGVNFRTRPGKARSVIHEENHHGSPPNVE 747
N Q+P +N + A S ++ NH P +
Sbjct: 712 NMNNQKQLP----LNINNKQQNAASQANQMNHQAQPQGAQ 747
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 129 (50.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 47/192 (24%), Positives = 89/192 (46%)
Query: 44 AVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--R---ASKHCGFVTI 98
A +G + + +L + ++ N+ DS+L F Q G V T R + G+ +
Sbjct: 23 ATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYV 82
Query: 99 SYYDIRAARNAMKSLQNKLTRSGK-LDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDE 157
++ + + A A++ L N + GK + + YS +D PS + G + + NLD S+ +
Sbjct: 83 NFTNPQDAARAIQEL-NYIPLYGKPIRVMYS-HRD-PSVRRSGAGNIFIKNLDESIDHKA 139
Query: 158 LHHIFGVYGEIKEIRETPQKIHQK----YIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
LH F +G I + Q ++++ + +A+ A+ +LN + KQ+ + P
Sbjct: 140 LHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPF 199
Query: 214 HLRGLRKCLANQ 225
R R AN+
Sbjct: 200 LRRQERDSTANK 211
Score = 60 (26.2 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 28/124 (22%), Positives = 50/124 (40%)
Query: 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPF 652
T + +KN+ T L A E K T + + K+K G+ F+N +
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSK---GFGFVNFENADDAARA 271
Query: 653 YQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILF--NTDGPN 710
+S NG K++ + E A + + + L ++ + DK L+ N D P+
Sbjct: 272 VESLNGHKFD--DKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLD-PS 328
Query: 711 AGDQ 714
D+
Sbjct: 329 ISDE 332
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 126 (49.4 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 56/219 (25%), Positives = 94/219 (42%)
Query: 17 NDSSYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKAL 76
ND + A I +G GV +GA+ ++ D ++ N+ DS+L
Sbjct: 19 NDGAATASATPGIGVGGGGD--GVTHGALCSLYVGD-----------LDFNVTDSQLYDY 65
Query: 77 FE---QYGDVRTFYRASKHC--GFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131
F Q VR A+ + G+ ++Y + A AM+ L + I YS +
Sbjct: 66 FTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYS-SR 124
Query: 132 DNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQK----YIEFYD 187
D+ S + G L V NLD SV N LH F G I + + Q +++F
Sbjct: 125 DS-SARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDT 183
Query: 188 TRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQL 226
+A+ A+ +LN + + KQI + P + R+ A+++
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKM 222
Score = 63 (27.2 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 579 ELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHK---GTYDFIYLPI-----DF 630
++ + LR E+ + N Y + A D+ K G Y I + D
Sbjct: 203 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG 262
Query: 631 KNKCNVGYAFINMTDPSQIVPFYQSFNGKKWE 662
K++C + F+N +P ++ NGKK++
Sbjct: 263 KSRC---FGFVNFENPEDAARAVEALNGKKFD 291
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 49/178 (27%), Positives = 84/178 (47%)
Query: 35 NHELGVCNGAVAGEHL-NDEHPSRT-LLLRKINSNIEDSELKALFEQYGDVRTF-----Y 87
N+ G+ G+ + L ND S T L++ + ++ D EL ALF G + T Y
Sbjct: 101 NNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY 160
Query: 88 RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVF 147
+ G+ + + ++ A+K L R+ +L + Y+ P S K+ N L V
Sbjct: 161 KTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP-GGESIKDTN---LYVT 216
Query: 148 NLDSSVSNDELHHIFGVYGEIKEIRETPQKI--HQKYIEF--YDTRA-AEAALRELNS 200
NL ++++D+L IFG YG I + K+ + + F Y+ R A+ A+ LN+
Sbjct: 217 NLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 274
>POMBASE|SPBC8D2.09c [details] [associations]
symbol:msl1 "U2 snRNP-associated protein Msl1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0030620 "U2 snRNA binding"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC8D2.09c GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AB004538 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG317159 OrthoDB:EOG4TB7MM GO:GO:0030620
PANTHER:PTHR10501 PIR:T40754 RefSeq:NP_595571.1
ProteinModelPortal:Q7LL14 IntAct:Q7LL14 STRING:Q7LL14
EnsemblFungi:SPBC8D2.09c.1 GeneID:2541219 KEGG:spo:SPBC8D2.09c
OMA:LYLYCTQ NextBio:20802331 Uniprot:Q7LL14
Length = 111
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 139 INQGTLVVFNLDSSVS-ND---ELHHIFGVYGEIKEI--RETPQKIHQKYIEFYDTRAAE 192
+NQ TL V NL+ ++ ND L+ +F YG + +I +TP+ Q ++ F+D AA
Sbjct: 1 MNQNTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAA 60
Query: 193 AALRELNSRYIAGKQIKLEPSH 214
A++ L + GK++K++ +H
Sbjct: 61 IAMKALKNFIFFGKEMKIQYAH 82
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 121 (47.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 39/171 (22%), Positives = 75/171 (43%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--R---ASKHCGFVTISYY 101
GE S +L + ++N ++ ++ L +F G V + R + K G+ ++Y+
Sbjct: 42 GESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYH 101
Query: 102 DIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHI 161
A++ L I +S + +PS + G + + NL ++ N LH
Sbjct: 102 KYEDGEKAIEELNYNPIEGRPCRIMWS--QRDPSARRSGDGNIFIKNLHPAIDNKALHDT 159
Query: 162 FGVYGEIKEIRETPQKIHQ-KYIEF--YDT-RAAEAALRELNSRYIAGKQI 208
F +G+I + + Q K F Y+T AAEAA+ +N + +++
Sbjct: 160 FSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210
Score = 63 (27.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/79 (27%), Positives = 32/79 (40%)
Query: 591 NRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIV 650
N T + +KNI Y+ + K T IYL D K G+ F+N D V
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITS--IYLEKDQDGKSK-GFGFVNFEDHESAV 287
Query: 651 PFYQSFNGKKWEKFNSEKV 669
+ N K+ N +K+
Sbjct: 288 KAVEELNDKE---INGQKI 303
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 134 (52.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 37/166 (22%), Positives = 78/166 (46%)
Query: 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYRASKHCGFVTISYYDIRAARNA 109
DE +TL + ++S++ + L ALF G V++ R + + I Y + +AA A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTA 61
Query: 110 MKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGT-LVVFNLDSSVSNDELHHIFGVYGEI 168
+ ++ +L ++ ++++ N + +I+ + V +L + + L F +GEI
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Query: 169 KEIR--ETPQKIHQK---YIEFYDTRAAEAALRELNSRYIAGKQIK 209
R P + K ++ F AE A++ +N ++I + I+
Sbjct: 122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIR 167
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 135 (52.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 51/177 (28%), Positives = 82/177 (46%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115
+RTLL + ++ NI + ELK +FE ++R + + G I+Y + ++ +A K+L+
Sbjct: 250 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKG---IAYIEFKSEADAEKNLEE 306
Query: 116 KLTRS--GK-LDIHYSIPKDNPSEKEINQGT-------LVVFNLDSSVSNDELHHIFGVY 165
K G+ + ++Y+ K E+ T LV+ NL S + + L +F
Sbjct: 307 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 366
Query: 166 GEIKEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
IK PQ H K +IEF A+ AL N I G+ I+LE RG
Sbjct: 367 TFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 419
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 135 (52.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 51/177 (28%), Positives = 82/177 (46%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115
+RTLL + ++ NI + ELK +FE ++R + + G I+Y + ++ +A K+L+
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKG---IAYIEFKSEADAEKNLEE 452
Query: 116 KLTRS--GK-LDIHYSIPKDNPSEKEINQGT-------LVVFNLDSSVSNDELHHIFGVY 165
K G+ + ++Y+ K E+ T LV+ NL S + + L +F
Sbjct: 453 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 512
Query: 166 GEIKEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
IK PQ H K +IEF A+ AL N I G+ I+LE RG
Sbjct: 513 TFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 565
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 135 (52.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 51/177 (28%), Positives = 82/177 (46%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115
+RTLL + ++ NI + ELK +FE ++R + + G I+Y + ++ +A K+L+
Sbjct: 397 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKG---IAYIEFKSEADAEKNLEE 453
Query: 116 KLTRS--GK-LDIHYSIPKDNPSEKEINQGT-------LVVFNLDSSVSNDELHHIFGVY 165
K G+ + ++Y+ K E+ T LV+ NL S + + L +F
Sbjct: 454 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 513
Query: 166 GEIKEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
IK PQ H K +IEF A+ AL N I G+ I+LE RG
Sbjct: 514 TFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 566
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 50/219 (22%), Positives = 93/219 (42%)
Query: 59 LLLRKINSNIEDSELKALFEQYGDVRT-----FYRASKHCGFVTISYYDIRAARNAMKSL 113
L+L + ++ +SEL LF ++G++R R C + + Y R A A+ +
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNGM 102
Query: 114 QNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 173
TR +L + ++ PSE E +L V NL + + ++ +F YG I ++
Sbjct: 103 DGYETRGKRLKVAFA----RPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNL 158
Query: 174 TPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPP 228
K + + +++F R AE A ++ I G L + +K ++
Sbjct: 159 LRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSG 218
Query: 229 ELEQEECGSYQQQNSPPNKPTNESAGAFAHGSKSSRITD 267
+++ +++SPP E H SK SR +D
Sbjct: 219 SQYKDK-----RKSSPPPYKRRERTNDH-HVSKRSRDSD 251
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 134 (52.2 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 50/171 (29%), Positives = 80/171 (46%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115
+RTLL + ++ NI + ELK +FE ++R + K G I+Y + ++ +A K+L+
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKG---IAYIEFKSEADAEKNLEE 450
Query: 116 KLTRS--GK-LDIHYSIPKDNPSEKEINQGT-------LVVFNLDSSVSNDELHHIFGVY 165
K G+ + ++Y+ K E+ T LV+ NL S + + L +F
Sbjct: 451 KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA 510
Query: 166 GEIKEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIKLE 211
IK PQ H K +IEF A+ AL N I G+ I+LE
Sbjct: 511 TFIK----VPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 557
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 134 (52.2 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 47/174 (27%), Positives = 84/174 (48%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115
+RTLL + ++ NI + ELK +FE ++R + K G I+Y + ++ +A K+L+
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKG---IAYIEFKSEADAEKNLEE 449
Query: 116 KLTRS--GK-LDIHYSIPKDNPSEKEINQGT-------LVVFNLDSSVSNDELHHIF--G 163
K G+ + ++Y+ K E+ T LV+ NL S + + L +F
Sbjct: 450 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509
Query: 164 VYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
+ ++ + ++ K + +IEF A+ AL N I G+ I+LE RG
Sbjct: 510 TFIKVPQNQQGKSKGYA-FIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 562
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 123 (48.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 51/221 (23%), Positives = 95/221 (42%)
Query: 48 EHLNDEH-PSRT-LLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISY 100
+H+ DE S+T L++ + N+ EL++LF G+V + R A G+ ++Y
Sbjct: 23 DHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 82
Query: 101 YDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHH 160
+ A A+ +L +S + + Y+ PS I L + L +++ ++
Sbjct: 83 LNPNDAERAISTLNGLRLQSKTIKVSYA----RPSSDSIKDANLYISGLPKTMTQKDVEE 138
Query: 161 IFGVYGEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSRYIAGKQIKLEPSHL 215
+FG YG I R + + + F +D RA AE A+++LN + G ++
Sbjct: 139 MFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFA 198
Query: 216 RGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAF 256
+ Q+ P++ Y QQ+ P + A F
Sbjct: 199 ASPNQVKNTQVIPQV-------YHQQSRRFGGPVHHQAQRF 232
Score = 49 (22.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT + S NG
Sbjct: 292 DFNTNKCK-GFGFVTMTHYEEAAMAIASLNG 321
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 115 (45.5 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESA 253
++++E S+ G ++ PP + Y++++ PP + E A
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRYLERA 119
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 132 (51.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 52/183 (28%), Positives = 83/183 (45%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 393 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 449
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSN 155
+A K+L+ K T G+ + ++Y+ K D+ K G TLV+ NL S +
Sbjct: 450 ADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATE 509
Query: 156 DELHHIFGVYGEIKEIRETPQKIH-QKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214
+ L +F IK + K +IEF A+ AL N R I G+ I+LE
Sbjct: 510 ETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 569
Query: 215 LRG 217
RG
Sbjct: 570 PRG 572
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 130 (50.8 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 52/180 (28%), Positives = 80/180 (44%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 305 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 361
Query: 107 RNAMKSLQNKLTRSGKLDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSNDEL 158
+A K+L+ K G +I Y+ K D+ K G TLV+ NL S + + L
Sbjct: 362 ADAEKTLEEK---QGT-EIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 417
Query: 159 HHIFGVYGEIKEIRETPQKIH-QKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
+F IK + K +IEF A+ AL N R I G+ I+LE RG
Sbjct: 418 QEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 477
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 130 (50.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 52/180 (28%), Positives = 80/180 (44%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 310 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 366
Query: 107 RNAMKSLQNKLTRSGKLDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSNDEL 158
+A K+L+ K G +I Y+ K D+ K G TLV+ NL S + + L
Sbjct: 367 ADAEKTLEEK---QGT-EIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 422
Query: 159 HHIFGVYGEIKEIRETPQKIH-QKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
+F IK + K +IEF A+ AL N R I G+ I+LE RG
Sbjct: 423 QEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 482
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 130 (50.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 52/180 (28%), Positives = 80/180 (44%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 310 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 366
Query: 107 RNAMKSLQNKLTRSGKLDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSNDEL 158
+A K+L+ K G +I Y+ K D+ K G TLV+ NL S + + L
Sbjct: 367 ADAEKTLEEK---QGT-EIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 422
Query: 159 HHIFGVYGEIKEIRETPQKIH-QKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217
+F IK + K +IEF A+ AL N R I G+ I+LE RG
Sbjct: 423 QEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 482
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 114 (45.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 146 VFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205
V NL ++ + EL FG YG ++ + ++EF D R A A+REL+ R + G
Sbjct: 14 VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 73
Query: 206 KQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNK 247
++++E S+ G ++ PP + Y++++ PP +
Sbjct: 74 CRVRVELSN--GEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 102 (41.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIR-----ETPQKIHQKYIEFYDTRAAEAALRE 197
TL + NL + + D L ++FG YG + R +T Q Y++F A+AAL
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 198 LNSRYIAGKQIKLE 211
+N YI G+ +L+
Sbjct: 331 MNGEYIEGRPCRLD 344
Score = 73 (30.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDV---RTFY-RAS-KHCGFVTISYYDIRAAR 107
E P+ TL + +++ NI+D+ LK FE G V R RA+ K G+ + + AA
Sbjct: 165 EEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAE 223
Query: 108 NAMKSLQNKLTRSGKLDIHYSIPKDNPSE 136
A++ +Q K +++ S K + S+
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKPHASK 252
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 375 SSNGHSIGFTEGVFGSASNGSCPRPGH 401
++N GF G FG + PR G+
Sbjct: 356 NNNNRRGGFGGG-FGGRERSATPRSGN 381
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 102 (41.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIR-----ETPQKIHQKYIEFYDTRAAEAALRE 197
TL + NL + + D L ++FG YG + R +T Q Y++F A+AAL
Sbjct: 271 TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEA 330
Query: 198 LNSRYIAGKQIKLE 211
+N YI G+ +L+
Sbjct: 331 MNGEYIEGRPCRLD 344
Score = 73 (30.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDV---RTFY-RAS-KHCGFVTISYYDIRAAR 107
E P+ TL + +++ NI+D+ LK FE G V R RA+ K G+ + + AA
Sbjct: 165 EEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAE 223
Query: 108 NAMKSLQNKLTRSGKLDIHYSIPKDNPSE 136
A++ +Q K +++ S K + S+
Sbjct: 224 KALEEMQGKEIDGRPINLDMSTGKPHASK 252
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 375 SSNGHSIGFTEGVFGSASNGSCPRPGH 401
++N GF G FG + PR G+
Sbjct: 356 NNNNRRGGFGGG-FGGRERSATPRSGN 381
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 130 (50.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 47/180 (26%), Positives = 84/180 (46%)
Query: 43 GAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTF-----YRASKHCGFVT 97
GA A + + +L + +++ + DS+L F Q G V + + G+
Sbjct: 31 GAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGY 90
Query: 98 ISYYDIRAARNAMKSLQNKLTRSGK-LDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSND 156
++Y + A A+ L N + +G+ + + YS+ +D PS ++ G + + NLD S+ +
Sbjct: 91 VNYATPQDASRALNEL-NFMALNGRAIRVMYSV-RD-PSLRKSGVGNIFIKNLDKSIDHK 147
Query: 157 ELHHIFGVYGEIKEIRETPQKIHQ-KYIEF--YDT-RAAEAALRELNSRYIAGKQIKLEP 212
LH F +G I + Q K F YDT AA+ A+ +LN + KQ+ + P
Sbjct: 148 ALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Score = 47 (21.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/105 (20%), Positives = 40/105 (38%)
Query: 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPF 652
T + +KN+ + + L E T I + K+K G+ F+N +
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK---GFGFVNFENSDDAARA 280
Query: 653 YQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDK 697
+ NGK ++ + E A + + + L F+ S DK
Sbjct: 281 VDALNGKTFD--DKEWFVGKAQKKSERETELKQKFEQSLKEAADK 323
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 129 (50.5 bits), Expect = 0.00014, P = 0.00014
Identities = 50/184 (27%), Positives = 84/184 (45%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ E +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 383 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKG---IAYIEFKTE 439
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSN 155
+A K+ + K T G+ + ++Y+ K D K G TLV+ NL S +
Sbjct: 440 ADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 499
Query: 156 DELHHIF--GVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
+ L +F + ++ + + K + +IEF A+ AL N R I G+ I+LE
Sbjct: 500 ETLQEVFEKATFIKVPQNQNGKSKGYA-FIEFASFEDAKEALNSCNKREIEGRAIRLELQ 558
Query: 214 HLRG 217
RG
Sbjct: 559 GPRG 562
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 129 (50.5 bits), Expect = 0.00014, P = 0.00014
Identities = 50/184 (27%), Positives = 84/184 (45%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ E +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 384 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKG---IAYIEFKTE 440
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSN 155
+A K+ + K T G+ + ++Y+ K D K G TLV+ NL S +
Sbjct: 441 ADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 500
Query: 156 DELHHIF--GVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
+ L +F + ++ + + K + +IEF A+ AL N R I G+ I+LE
Sbjct: 501 ETLQEVFEKATFIKVPQNQNGKSKGYA-FIEFASFEDAKEALNSCNKREIEGRAIRLELQ 559
Query: 214 HLRG 217
RG
Sbjct: 560 GPRG 563
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 129 (50.5 bits), Expect = 0.00014, P = 0.00014
Identities = 50/184 (27%), Positives = 84/184 (45%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ E +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 385 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKG---IAYIEFKTE 441
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPK----DNPSEKEIN-QG---TLVVFNLDSSVSN 155
+A K+ + K T G+ + ++Y+ K D K G TLV+ NL S +
Sbjct: 442 ADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE 501
Query: 156 DELHHIF--GVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
+ L +F + ++ + + K + +IEF A+ AL N R I G+ I+LE
Sbjct: 502 ETLQEVFEKATFIKVPQNQNGKSKGYA-FIEFASFEDAKEALNSCNKREIEGRAIRLELQ 560
Query: 214 HLRG 217
RG
Sbjct: 561 GPRG 564
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 49/184 (26%), Positives = 85/184 (46%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 37 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 93
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPKDNPSE----KEIN-QG---TLVVFNLDSSVSN 155
+A K+L+ K T G+ + ++Y+ K + K G TLV+ NL S +
Sbjct: 94 ADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATE 153
Query: 156 DELHHIF--GVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
+ L +F + ++ + + K + +IEF A+ AL N R I G+ I+LE
Sbjct: 154 ETLQEVFEKATFIKVPQNQNGKSKGYA-FIEFASFEDAKEALNSCNKREIEGRAIRLELQ 212
Query: 214 HLRG 217
RG
Sbjct: 213 GPRG 216
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 59/222 (26%), Positives = 102/222 (45%)
Query: 34 SNHELGVCNGAVAGEHLNDEHPSRT-LLLRKINSNIEDSELKALFEQYGDVRTFY----R 88
SN G NGA+ EH + P + + +I + + ELK LFE YG V R
Sbjct: 93 SNGTAGKMNGAL--EHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDR 150
Query: 89 A-----SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI---PKDNPSEKEIN 140
+ SK C FVT +Y +AA A +L N T +G +H+ I P D+ +
Sbjct: 151 SQNPPQSKGCCFVT--FYTRKAALEAQNALHNIKTLTG---MHHPIQMKPADSEKSNAVE 205
Query: 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR--ETPQKIHQ--KYIEFYDTRA-AEAAL 195
L + + + +++ +F YG+I+E R P + + ++ F TRA A+ A+
Sbjct: 206 DRKLFIGMVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSRGCAFVTF-STRAMAQNAI 264
Query: 196 RELN-SRYIAGKQ----IKLEPSHLRGLRKCLANQLPPELEQ 232
+ ++ S+ + G +K + ++ L QL +++Q
Sbjct: 265 KAMHQSQTMEGCSSPMVVKFADTQKDKEQRRLQQQLAQQMQQ 306
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 44/194 (22%), Positives = 90/194 (46%)
Query: 59 LLLRKINSNIEDSELKALFEQYGD-----VRTFYRASKHCGFVTISYYDIRAARNAMKSL 113
+ ++ ++ +I++ L F +G V T SK GFV Y D RAA A++ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFV--HYQDQRAADRAIEEM 157
Query: 114 QNKLTRSGKLDI-HYSIPKDNPSE---KEINQGTLVVFNLDSSVSNDELHHIFGVYGE-- 167
KL R L + + KD +E K + + N + ++ L +F YG+
Sbjct: 158 NGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTL 217
Query: 168 -IKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQ 225
+K +++ K + ++ F +AA+ A+ ++N R I G+ I + + + R+ +
Sbjct: 218 SVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKE 277
Query: 226 LPPELEQEECGSYQ 239
+ ++++E + Q
Sbjct: 278 MFEQMKKERIRARQ 291
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 127 (49.8 bits), Expect = 0.00021, P = 0.00021
Identities = 56/240 (23%), Positives = 107/240 (44%)
Query: 19 SSYVAQKKSEICIGFS---NHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKA 75
S AQ+ ++C + LGVC +VA L ++ K NI + E
Sbjct: 243 SKDAAQEAVKLCDNYEIRPGKHLGVCI-SVANNRLF----VGSIPKNKTKENILE-EFNK 296
Query: 76 LFEQYGDVRTFYRAS---KHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKL-DIHYSIP 130
+ E DV +++ K+ GF + Y D ++A A + L + K+ G + + ++ P
Sbjct: 297 VTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 356
Query: 131 KDNPSEKEINQGTLVVF--NLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDT 188
+ P + E+ V+F NL ++V+ + L F +G+++ +++ ++ F D
Sbjct: 357 VEEP-DPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD---YAFVHFEDR 412
Query: 189 RAAEAALRELNSRYIAGKQIKL---EPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPP 245
AA A+ E+N + I G++I++ +P + + A Q E+ Y PP
Sbjct: 413 GAAVKAMNEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYYPPPRMPP 472
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 45/183 (24%), Positives = 86/183 (46%)
Query: 44 AVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHC------GFVT 97
A E + E+ S +L + + ++ ++ L +F G V + R + G+
Sbjct: 25 ATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI-RVCRDAITKTSLGYAY 83
Query: 98 ISYYDIRAARNAMKSLQNKLTRSGKL-DIHYSIPKDNPSEKEINQGTLVVFNLDSSVSND 156
+++ D A R A++ L N G+L I +S + +PS ++ G + + NL + N
Sbjct: 84 VNFNDHEAGRKAIEQL-NYTPIKGRLCRIMWS--QRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 157 ELHHIFGVYGEIKEIR-ETPQKIHQK---YIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212
L+ F V+G+I + T + K ++ F + AA+ A+ LN + G++I + P
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 213 SHL 215
HL
Sbjct: 201 -HL 202
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 117 (46.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 43/172 (25%), Positives = 74/172 (43%)
Query: 41 CNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGD------VRTFYRASKHCG 94
C+ V E N E L++ + N+ ELK+LF G+ VR + G
Sbjct: 52 CSSPV--ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLG 109
Query: 95 FVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVS 154
+ ++Y D + A A+ +L ++ + + Y+ PS I L V L +++
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMT 165
Query: 155 NDELHHIFGVYGEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
EL +F YG I R ++ + + F +D R AE A++ LN +
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 51 (23.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 340 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 369
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 127 (49.8 bits), Expect = 0.00024, P = 0.00024
Identities = 45/198 (22%), Positives = 89/198 (44%)
Query: 59 LLLRKINSNIEDSELKALFEQYGDVRTF------YRASKHCGFVTISYYDIRAARNAMKS 112
+ ++ ++S I++ L F +G++ + + SK GFV Y AA NA+K
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFV--HYETAEAANNAIKH 189
Query: 113 LQNKLTRSGKLDI-HYSIPKDNPS---EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEI 168
+ L K+ + H+ KD S E + N + + N+D V ++E +F +GEI
Sbjct: 190 VNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI 249
Query: 169 KEI---RETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLAN 224
R++ K ++ F +A+AA+ E+N + + +++ + + + R+
Sbjct: 250 TSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELR 309
Query: 225 QLPPELEQEECGSYQQQN 242
+ E+ YQ N
Sbjct: 310 KQYEAARMEKASKYQGVN 327
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 115 (45.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 51 (23.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 297 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 326
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 115 (45.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 51 (23.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 310 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 339
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 115 (45.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 51 (23.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 311 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 340
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 32/166 (19%), Positives = 78/166 (46%)
Query: 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCG---FVTISYYDIRAARN 108
DE RTL + ++ ++ ++ + +F Q G ++ G + + +Y+ R A
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAA 63
Query: 109 AMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEI 168
A+ ++ + + ++++ + + N + V +L +S D++ F +G+I
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Query: 169 KEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIK 209
+ R K +I F + AE+A++++N +++ G+QI+
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIR 169
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 115 (45.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 61 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 120
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 177 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 51 (23.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 338 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 367
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 111 (44.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 47/174 (27%), Positives = 78/174 (44%)
Query: 42 NGAVAGEHLNDE-HPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGF 95
N A A + N+E P L++ + + E+++LF +G+V + R + G+
Sbjct: 94 NNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGY 153
Query: 96 VTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSN 155
++Y A A+ +L N L K I SI + PS + I L V L +++
Sbjct: 154 GFVNYVKQEDAEKAINAL-NGLRLQNKT-IKVSIAR--PSSESIKGANLYVSGLPKNMTQ 209
Query: 156 DELHHIFGVYGEIKEIRETPQKI---H----QKYIEF--YDTR-AAEAALRELN 199
+L +F YG+I R I H K + F +D R A+ A++ELN
Sbjct: 210 SDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELN 263
Score = 57 (25.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 632 NKCNVGYAFINMTDPSQIVPFYQSFNG 658
NKC G+ F+ MT+ + V QS NG
Sbjct: 399 NKCK-GFGFVTMTNYEEAVLAIQSLNG 424
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 115 (45.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 178 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 51 (23.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 340 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 369
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 115 (45.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 39/161 (24%), Positives = 71/161 (44%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFVTISYYDIRA 105
N E L++ + N+ ELK+LF G++ + R + G+ ++Y D +
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 106 ARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVY 165
A A+ +L ++ + + Y+ PS I L V L +++ EL +F Y
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 166 GEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
G I R ++ + + F +D R AE A++ LN +
Sbjct: 178 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 51 (23.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 339 DFNTNKCK-GFGFVTMTNYDEAAMAIASLNG 368
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 46/178 (25%), Positives = 81/178 (45%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAM 110
N++ RT+ + I++ + + +L +LF G V + + ++ + A A
Sbjct: 131 NEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGAR 190
Query: 111 KSLQNKLTRSGKLDIHYSIPKD-----NPS-----EKEINQ-G-TLVVFNLDSSVSNDEL 158
+L+ T G I + K NPS + E+ + G T+ N+D V+ EL
Sbjct: 191 SALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDKEVTKMEL 250
Query: 159 HHIFG-VYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN-SRYIAGK-QIKLEPS 213
+ F V GE+ +R HQ I F + + AE+A+ LN S + G+ I++ PS
Sbjct: 251 ENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNCSGVVLGELPIRVSPS 308
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 121 (47.7 bits), Expect = 0.00042, P = 0.00042
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 133 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAE 192
N + + N T+ V LD++V++DEL IFG +GE+ ++ P K ++++ + +AE
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK-RCGFVQYANKASAE 309
Query: 193 AALRELNSRYIAGKQIKL 210
AL LN + G+ I+L
Sbjct: 310 HALSVLNGTQLGGQSIRL 327
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 126 (49.4 bits), Expect = 0.00044, P = 0.00044
Identities = 46/189 (24%), Positives = 90/189 (47%)
Query: 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKH--------CGFVTIS 99
E + P TL ++ +N + + LK +F + G V++ + K GF +
Sbjct: 721 EEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVE 780
Query: 100 YYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPS-----EKEI--NQGT--LVVFNLD 150
Y A+ A+K LQ + S KL++ S P+ +K++ Q T ++V N+
Sbjct: 781 YRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIP 840
Query: 151 SSVSNDELHHIFGVYGEIKEIRETPQKI-----HQKY--IEFYDTRAAEAALREL-NSRY 202
E+ +F +GE+K +R P+K+ H+ + ++F + A+ A + L +S +
Sbjct: 841 FQADKREIQELFSTFGELKTVR-LPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTH 899
Query: 203 IAGKQIKLE 211
+ G+++ LE
Sbjct: 900 LYGRRLVLE 908
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 124 (48.7 bits), Expect = 0.00051, P = 0.00051
Identities = 49/184 (26%), Positives = 85/184 (46%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 396 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 452
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPKDNPSE----KEIN-QG---TLVVFNLDSSVSN 155
+A K+L+ K T G+ + ++Y+ K + K G TLV+ NL S +
Sbjct: 453 ADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATE 512
Query: 156 DELHHIF--GVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
+ L +F + ++ + + K + +IEF A+ AL N R I G+ I+LE
Sbjct: 513 ETLQEVFEKATFIKVPQNQNGKSKGYA-FIEFASFEDAKEALNSCNKREIEGRAIRLELQ 571
Query: 214 HLRG 217
RG
Sbjct: 572 GPRG 575
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 126 (49.4 bits), Expect = 0.00052, P = 0.00052
Identities = 42/179 (23%), Positives = 88/179 (49%)
Query: 47 GEHLNDEH-PSRTLLLRKINSNIEDSELKALFEQYGDVRTF-YRASKHCGFVTISYYDIR 104
G+ +++H PSR L + I ++ + +LK F +G++ + +K+C FV ++ D
Sbjct: 903 GDGEDEDHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFV--NFKDTN 960
Query: 105 AARNAMKSLQNKLTRSGKLDIHYSIPKDN------P-----SEKEINQGTLVVF--NLDS 151
A NA K + N++ S + +++ PK + P + + +N + ++ N+
Sbjct: 961 EAINAKKGMHNQVLGSQYIVVNFRHPKSDDFINGVPVVPITTPETLNSISRAIYIGNVSD 1020
Query: 152 SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210
++ E+ YGEI+ IR +K ++ F + A AAL+ LN + + +++
Sbjct: 1021 NLPEKEIRKECEKYGEIESIRILRKKACA-FVNFMNIPNATAALQTLNGKKLGDTIVRV 1078
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 120 (47.3 bits), Expect = 0.00060, P = 0.00060
Identities = 39/174 (22%), Positives = 82/174 (47%)
Query: 47 GEHL-NDEHPSRTLLLRKINSNIEDSELKALFEQYGDV---RTFYRASKHCGFVTISYYD 102
G HL N RTL + ++S + + + LF Q G V + + S + + + D
Sbjct: 35 GFHLGNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSND-PYAFVEFSD 93
Query: 103 IRAARNAMKSLQNKLTRSGKLDIHYSI-PKDNPSEKEINQGTLV-VFNLDSSVSNDELHH 160
A A++++ +L ++ +++++ P S+ + + V V +L S V N +L
Sbjct: 94 HGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLRE 153
Query: 161 IFGVYGEI---KEIRETPQKIHQKY--IEFYDTRAAEAALRELNSRYIAGKQIK 209
F +G++ K IR+T + Y + + AE A+ ++N +++ + I+
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 207
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 123 (48.4 bits), Expect = 0.00064, P = 0.00064
Identities = 46/184 (25%), Positives = 83/184 (45%)
Query: 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAA 106
G+ + +RTLL + + + ELK +FE ++R + K G I+Y + +
Sbjct: 388 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 444
Query: 107 RNAMKSLQNKL-TR-SGK-LDIHYSIPKDNPSEKEINQG--------TLVVFNLDSSVSN 155
+A K+ + K T G+ + ++Y+ K + + TLV+ NL S +
Sbjct: 445 ADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATE 504
Query: 156 DELHHIF--GVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213
+ L +F + ++ + + K + +IEF A+ AL N R I G+ I+LE
Sbjct: 505 ETLQEVFEKATFIKVPQNQNGKSKGYA-FIEFASFEDAKEALNSCNKREIEGRAIRLELQ 563
Query: 214 HLRG 217
RG
Sbjct: 564 GPRG 567
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 119 (46.9 bits), Expect = 0.00064, P = 0.00064
Identities = 58/227 (25%), Positives = 100/227 (44%)
Query: 58 TLLLRKINSNIEDSELKALFEQYGDVR--TFYR-----ASKHCGFVTISYYDIRAARNAM 110
T+ + I S++ + + +F ++G++ T + SK C F+T S + A NA+
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKE--EADNAL 76
Query: 111 KSLQNK---LTRSGK-LDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYG 166
+ L K L + YS DN EK + L + L +S D++ +FG YG
Sbjct: 77 NTTNESGTFLENMNKPLQVKYS---DNEIEKM--ERKLFIGMLGTS-DEDQIRILFGNYG 130
Query: 167 EIKEIRETPQKIHQ-KYIEF--YDTR-AAEAALRELNSRY-IAGKQ----IKLEPSHLRG 217
I+++ +K + K F Y TR +E ALRE++ ++ + G +K + +
Sbjct: 131 IIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQK 190
Query: 218 LRKCLANQLPPE--LEQEECGSYQQQNSPPNKPTNESAGAFAHGSKS 262
+K L NQ PP+ + QQQ + F +G S
Sbjct: 191 RKKLLGNQQPPQNPFNFYQQNQQQQQQQQQQQQQQNQYQPFFYGQNS 237
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 113 (44.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 40/170 (23%), Positives = 73/170 (42%)
Query: 42 NGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFV 96
NG + G + + L++ + N+ E K+LF GD+ + R + G+
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 TISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSND 156
++Y D A A+ +L ++ + + Y+ PS I L V L ++S
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMSQK 139
Query: 157 ELHHIFGVYGEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
E+ +F YG I R ++ + + F +D R AE A++ LN +
Sbjct: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 50 (22.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 318 DFTTNKCK-GFGFVTMTNYDEAAMAIASLNG 347
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 113 (44.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 40/170 (23%), Positives = 73/170 (42%)
Query: 42 NGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFV 96
NG + G + + L++ + N+ E K+LF GD+ + R + G+
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 TISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSND 156
++Y D A A+ +L ++ + + Y+ PS I L V L ++S
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMSQK 139
Query: 157 ELHHIFGVYGEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
E+ +F YG I R ++ + + F +D R AE A++ LN +
Sbjct: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 50 (22.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 318 DFTTNKCK-GFGFVTMTNYDEAAMAIASLNG 347
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 113 (44.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 40/170 (23%), Positives = 73/170 (42%)
Query: 42 NGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFV 96
NG + G + + L++ + N+ E K+LF GD+ + R + G+
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 TISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSND 156
++Y D A A+ +L ++ + + Y+ PS I L V L ++S
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMSQK 139
Query: 157 ELHHIFGVYGEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
E+ +F YG I R ++ + + F +D R AE A++ LN +
Sbjct: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 50 (22.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 318 DFTTNKCK-GFGFVTMTNYDEAAMAIASLNG 347
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 113 (44.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 40/170 (23%), Positives = 73/170 (42%)
Query: 42 NGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR---ASKHCGFV 96
NG + G + + L++ + N+ E K+LF GD+ + R + G+
Sbjct: 24 NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 TISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSND 156
++Y D A A+ +L ++ + + Y+ PS I L V L ++S
Sbjct: 84 FVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMSQK 139
Query: 157 ELHHIFGVYGEIKEIRETPQKIH--QKYIEF--YDTRA-AEAALRELNSR 201
E+ +F YG I R ++ + + F +D R AE A++ LN +
Sbjct: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 50 (22.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 629 DFK-NKCNVGYAFINMTDPSQIVPFYQSFNG 658
DF NKC G+ F+ MT+ + S NG
Sbjct: 319 DFTTNKCK-GFGFVTMTNYDEAAMAIASLNG 348
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 124 (48.7 bits), Expect = 0.00067, P = 0.00067
Identities = 49/195 (25%), Positives = 91/195 (46%)
Query: 56 SRTLLLRKINSNIEDSELKALFEQYGDV-RTFYRASKHCGFVTISYYDIRAARNAMKSLQ 114
S L + + +S+L LF +YGD+ R +S+ GF I Y + A A ++LQ
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR--GFAFIYYRHVEEAVAAKEALQ 74
Query: 115 NKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET 174
++ I Y+ P P + +L V + +VS D+L F +G+I++ R
Sbjct: 75 GANLNGSQIKIEYARPA-KPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL 127
Query: 175 PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEE 234
++ +I++Y+ A A + +N + + G ++++ L +Q P + ++
Sbjct: 128 RER-KTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVD---------FLRSQAPKK--EQW 174
Query: 235 CGSYQQQNSPPN-KP 248
GSY +N N KP
Sbjct: 175 AGSYDNRNGNMNHKP 189
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 119 (46.9 bits), Expect = 0.00076, P = 0.00076
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 120 SGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIH 179
+G+ D + S ++ + N T+ V LD+SV++D L ++F YGEI ++ P
Sbjct: 239 TGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVK-IPAGKR 297
Query: 180 QKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210
+++F + AE ALR LN + G ++L
Sbjct: 298 CGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 122 (48.0 bits), Expect = 0.00084, P = 0.00084
Identities = 51/219 (23%), Positives = 92/219 (42%)
Query: 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYG---DVRTFY----RASKHCGFVTISYYDI 103
++E RT+ + K++ NI + +L LF Q G +VR + K G+V S ++
Sbjct: 260 DEESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEM 319
Query: 104 --RAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHI 161
+A + L + + + K N + + + V + SV+ +++ I
Sbjct: 320 VDKAIALSGSVLDGQQILVHSIQPEKKVIKSNSTGSSGGESRIYVGYIHLSVAEEQIRVI 379
Query: 162 FGVYGEIK--EIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 219
F YG+I I P +I+F +A+ A+ ELN + GK +KL ++
Sbjct: 380 FQPYGDIDFINIHTKPGISKYAFIQFKTQESAKRAITELNGYELMGKNLKL---NMVSQE 436
Query: 220 KCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAFAH 258
K N ++ + + N PN+ N A A H
Sbjct: 437 K---NSNGTYIQIPQINNIIHHNYAPNQLYNAQAAAHIH 472
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 118 (46.6 bits), Expect = 0.00086, P = 0.00086
Identities = 29/168 (17%), Positives = 78/168 (46%)
Query: 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCG---FVTISYYDIRAA 106
+ D+ RTL + ++ ++ + + LF Q G ++ ++H + + +Y+ R A
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 107 RNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYG 166
A+ ++ + ++ ++++ + + N + V +L ++ +++ F +G
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFG 121
Query: 167 EIKEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIK 209
+I + R K ++ FY+ AE A+ + +++ G+QI+
Sbjct: 122 KISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 118 (46.6 bits), Expect = 0.00088, P = 0.00088
Identities = 29/168 (17%), Positives = 78/168 (46%)
Query: 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCG---FVTISYYDIRAA 106
+ D+ RTL + ++ ++ + + LF Q G ++ ++H + + +Y+ R A
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 107 RNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYG 166
A+ ++ + ++ ++++ + + N + V +L ++ +++ F +G
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFG 121
Query: 167 EIKEIRETPQKIHQK-----YIEFYDTRAAEAALRELNSRYIAGKQIK 209
+I + R K ++ FY+ AE A+ + +++ G+QI+
Sbjct: 122 KISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 118 (46.6 bits), Expect = 0.00088, P = 0.00088
Identities = 48/198 (24%), Positives = 95/198 (47%)
Query: 23 AQKKSEICIGFS---NHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQ 79
AQ+ ++C + LGVC +VA L ++ K NI + E + E
Sbjct: 188 AQEAVKLCDSYEIRPGKHLGVCI-SVANNRLF----VGSIPKNKTKENILE-EFSKVTEG 241
Query: 80 YGDVRTFYRAS---KHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKL-DIHYSIPKDNP 134
DV +++ K+ GF + Y D ++A A + L + K+ G + + ++ P + P
Sbjct: 242 LVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP 301
Query: 135 SEKEINQGTLVVF--NLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAE 192
+ E+ V+F NL ++V+ + L F +G+++ +++ ++ F D AA
Sbjct: 302 -DPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD---YAFVHFEDRGAAV 357
Query: 193 AALRELNSRYIAGKQIKL 210
A+ E+N + I G++I++
Sbjct: 358 KAMDEMNGKEIEGEEIEI 375
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 763 737 0.00088 121 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 84
No. of states in DFA: 620 (66 KB)
Total size of DFA: 397 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.82u 0.13s 68.95t Elapsed: 00:00:03
Total cpu time: 68.83u 0.13s 68.96t Elapsed: 00:00:03
Start: Mon May 20 22:51:08 2013 End: Mon May 20 22:51:11 2013