Query 004289
Match_columns 763
No_of_seqs 456 out of 2124
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 3.2E-79 7E-84 671.9 25.3 522 1-736 1-529 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 5.6E-47 1.2E-51 341.2 10.2 97 592-688 1-97 (97)
3 TIGR01659 sex-lethal sex-letha 100.0 1.5E-27 3.2E-32 260.9 20.2 163 51-217 102-276 (346)
4 TIGR01645 half-pint poly-U bin 99.9 2.7E-25 5.8E-30 255.9 19.9 163 55-217 106-285 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.9E-25 1.1E-29 239.7 20.9 159 55-217 2-172 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-24 3.2E-29 235.9 20.5 164 55-218 88-351 (352)
7 KOG0148 Apoptosis-promoting RN 99.9 5E-25 1.1E-29 225.8 14.9 161 57-218 63-240 (321)
8 TIGR01628 PABP-1234 polyadenyl 99.9 5.5E-24 1.2E-28 246.5 23.8 167 54-220 176-368 (562)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.1E-24 6.6E-29 244.7 18.7 162 55-217 1-175 (481)
10 TIGR01622 SF-CC1 splicing fact 99.9 5E-24 1.1E-28 240.2 19.7 163 52-215 85-265 (457)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.2E-23 2.6E-28 239.8 19.3 164 53-216 272-480 (481)
12 TIGR01648 hnRNP-R-Q heterogene 99.9 5.3E-23 1.2E-27 236.5 23.6 162 55-219 57-310 (578)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-23 2.4E-28 243.9 18.0 158 58-217 2-168 (562)
14 KOG0144 RNA-binding protein CU 99.9 9.6E-24 2.1E-28 227.2 14.7 163 55-220 33-210 (510)
15 KOG0117 Heterogeneous nuclear 99.9 1.7E-22 3.6E-27 218.6 20.8 162 56-220 83-335 (506)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1E-22 2.2E-27 232.4 19.4 163 51-215 170-374 (509)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.8E-21 1E-25 218.7 18.8 163 54-216 293-502 (509)
18 KOG0145 RNA-binding protein EL 99.9 3.2E-21 7E-26 196.7 12.3 162 55-220 40-213 (360)
19 KOG0131 Splicing factor 3b, su 99.8 5.1E-21 1.1E-25 187.2 12.5 161 55-218 8-179 (203)
20 KOG0109 RNA-binding protein LA 99.8 2.9E-21 6.2E-26 200.0 9.4 147 58-216 4-150 (346)
21 TIGR01622 SF-CC1 splicing fact 99.8 5.7E-20 1.2E-24 207.3 18.8 162 56-217 186-449 (457)
22 KOG0127 Nucleolar protein fibr 99.8 1.3E-19 2.9E-24 199.8 15.1 162 57-218 6-198 (678)
23 KOG0127 Nucleolar protein fibr 99.8 6E-19 1.3E-23 194.7 16.7 166 57-222 118-384 (678)
24 KOG0124 Polypyrimidine tract-b 99.8 2.5E-19 5.5E-24 189.5 9.6 158 57-214 114-288 (544)
25 KOG0123 Polyadenylate-binding 99.8 2.1E-18 4.5E-23 190.3 15.0 149 58-220 3-157 (369)
26 KOG0110 RNA-binding protein (R 99.8 2.9E-18 6.3E-23 194.6 12.0 160 59-218 518-695 (725)
27 KOG0145 RNA-binding protein EL 99.8 1.2E-17 2.5E-22 170.9 14.8 161 56-216 127-358 (360)
28 KOG4206 Spliceosomal protein s 99.7 5E-17 1.1E-21 164.6 16.1 163 52-214 5-220 (221)
29 KOG0148 Apoptosis-promoting RN 99.7 2.7E-17 5.8E-22 169.4 10.5 181 54-284 4-190 (321)
30 KOG4212 RNA-binding protein hn 99.7 2.1E-14 4.5E-19 155.6 32.9 157 56-212 44-290 (608)
31 KOG0123 Polyadenylate-binding 99.7 3.3E-16 7.1E-21 173.0 14.8 161 59-220 79-250 (369)
32 KOG4205 RNA-binding protein mu 99.7 2E-16 4.3E-21 170.1 10.2 163 55-219 5-179 (311)
33 TIGR01645 half-pint poly-U bin 99.6 6.1E-15 1.3E-19 170.8 19.2 75 55-129 203-282 (612)
34 KOG0146 RNA-binding protein ET 99.6 3.3E-16 7.1E-21 160.8 7.8 165 55-219 18-368 (371)
35 KOG0105 Alternative splicing f 99.6 2.4E-15 5.1E-20 147.8 12.7 149 54-204 4-176 (241)
36 KOG0147 Transcriptional coacti 99.6 3.1E-16 6.7E-21 174.4 6.0 165 51-216 174-358 (549)
37 KOG0144 RNA-binding protein CU 99.6 1.2E-15 2.5E-20 165.3 9.1 162 56-217 124-505 (510)
38 KOG1457 RNA binding protein (c 99.5 1.3E-13 2.8E-18 139.1 11.3 150 55-204 33-274 (284)
39 KOG0147 Transcriptional coacti 99.5 1.3E-13 2.7E-18 153.9 11.4 162 55-216 277-528 (549)
40 KOG0106 Alternative splicing f 99.5 3.5E-14 7.6E-19 145.0 6.3 153 57-215 2-170 (216)
41 PLN03134 glycine-rich RNA-bind 99.5 2.4E-13 5.2E-18 132.0 10.6 81 53-133 31-116 (144)
42 KOG1190 Polypyrimidine tract-b 99.5 5.4E-13 1.2E-17 144.0 13.5 164 54-217 148-374 (492)
43 PLN03134 glycine-rich RNA-bind 99.4 4.6E-13 9.9E-18 130.0 10.4 77 141-217 34-115 (144)
44 KOG0110 RNA-binding protein (R 99.4 1.5E-12 3.3E-17 148.7 13.5 161 52-214 381-596 (725)
45 KOG1190 Polypyrimidine tract-b 99.4 2.7E-12 5.9E-17 138.7 13.9 160 56-215 297-490 (492)
46 KOG1548 Transcription elongati 99.4 6.4E-12 1.4E-16 133.8 16.4 160 55-214 133-350 (382)
47 KOG4660 Protein Mei2, essentia 99.4 7.4E-13 1.6E-17 148.1 9.6 165 53-220 72-254 (549)
48 TIGR01648 hnRNP-R-Q heterogene 99.3 1.9E-12 4.1E-17 149.9 9.7 112 55-169 232-369 (578)
49 PF00076 RRM_1: RNA recognitio 99.3 3.5E-12 7.6E-17 106.0 7.7 66 59-124 1-70 (70)
50 PF00076 RRM_1: RNA recognitio 99.3 6.3E-12 1.4E-16 104.4 9.1 66 144-209 1-70 (70)
51 KOG0107 Alternative splicing f 99.3 2.6E-12 5.6E-17 125.9 6.7 77 141-217 10-86 (195)
52 COG0724 RNA-binding proteins ( 99.3 1.9E-11 4.1E-16 123.7 12.0 118 56-173 115-257 (306)
53 KOG0107 Alternative splicing f 99.3 4.1E-12 8.8E-17 124.5 6.2 76 56-131 10-85 (195)
54 TIGR01659 sex-lethal sex-letha 99.3 1.2E-11 2.6E-16 136.1 9.6 78 139-216 105-187 (346)
55 KOG1456 Heterogeneous nuclear 99.2 1.6E-10 3.5E-15 123.9 15.7 169 48-217 23-200 (494)
56 KOG4211 Splicing factor hnRNP- 99.2 1.3E-10 2.7E-15 128.8 15.2 162 56-220 10-186 (510)
57 KOG0121 Nuclear cap-binding pr 99.2 2.5E-11 5.5E-16 113.6 6.2 76 53-128 33-113 (153)
58 KOG0124 Polypyrimidine tract-b 99.2 2E-10 4.2E-15 122.8 13.0 159 56-214 210-533 (544)
59 KOG0114 Predicted RNA-binding 99.2 1.9E-10 4E-15 104.3 9.8 82 141-222 18-101 (124)
60 KOG0125 Ataxin 2-binding prote 99.1 6.8E-11 1.5E-15 125.3 8.0 81 55-135 95-178 (376)
61 KOG0120 Splicing factor U2AF, 99.1 1.3E-10 2.8E-15 131.3 10.7 163 55-217 288-493 (500)
62 KOG0114 Predicted RNA-binding 99.1 1.1E-10 2.4E-15 105.8 8.0 80 53-132 15-96 (124)
63 PLN03120 nucleic acid binding 99.1 1.5E-10 3.2E-15 121.5 9.8 75 141-216 4-80 (260)
64 PF14259 RRM_6: RNA recognitio 99.1 2.6E-10 5.7E-15 95.8 9.0 66 144-209 1-70 (70)
65 PLN03120 nucleic acid binding 99.1 2E-10 4.3E-15 120.5 9.7 75 56-131 4-80 (260)
66 smart00362 RRM_2 RNA recogniti 99.1 2.8E-10 6E-15 93.0 8.6 69 143-211 1-72 (72)
67 KOG0125 Ataxin 2-binding prote 99.1 1.4E-10 2.9E-15 123.1 8.4 78 139-216 94-174 (376)
68 PF14259 RRM_6: RNA recognitio 99.1 1.9E-10 4E-15 96.7 7.3 66 59-124 1-70 (70)
69 KOG0122 Translation initiation 99.1 2.5E-10 5.4E-15 117.1 8.2 77 55-131 188-269 (270)
70 KOG0121 Nuclear cap-binding pr 99.1 2.2E-10 4.7E-15 107.4 6.6 81 140-220 35-120 (153)
71 smart00362 RRM_2 RNA recogniti 99.1 4.9E-10 1.1E-14 91.5 7.9 68 58-125 1-71 (72)
72 PF13893 RRM_5: RNA recognitio 99.1 6.6E-10 1.4E-14 90.1 8.4 56 158-213 1-56 (56)
73 KOG0149 Predicted RNA-binding 99.1 3.2E-10 6.9E-15 116.0 7.9 76 52-128 8-88 (247)
74 PLN03213 repressor of silencin 99.1 2E-10 4.3E-15 126.5 6.9 117 54-173 8-135 (759)
75 PLN03213 repressor of silencin 99.0 7E-10 1.5E-14 122.2 9.5 80 141-220 10-92 (759)
76 KOG4207 Predicted splicing fac 99.0 2.8E-10 6E-15 114.2 5.7 76 141-216 13-93 (256)
77 KOG0105 Alternative splicing f 99.0 3.4E-10 7.4E-15 111.8 5.8 79 139-217 4-84 (241)
78 KOG0113 U1 small nuclear ribon 99.0 7.2E-10 1.6E-14 116.4 8.5 83 48-130 93-180 (335)
79 KOG0122 Translation initiation 99.0 8.1E-10 1.8E-14 113.4 8.5 77 140-216 188-269 (270)
80 KOG4207 Predicted splicing fac 99.0 6E-10 1.3E-14 111.8 6.7 79 52-130 9-92 (256)
81 KOG0113 U1 small nuclear ribon 99.0 1.7E-09 3.6E-14 113.7 9.4 91 129-219 89-184 (335)
82 smart00360 RRM RNA recognition 99.0 1.6E-09 3.5E-14 87.9 7.5 66 146-211 1-71 (71)
83 cd00590 RRM RRM (RNA recogniti 99.0 3.1E-09 6.7E-14 87.2 9.1 70 143-212 1-74 (74)
84 smart00360 RRM RNA recognition 99.0 2.1E-09 4.5E-14 87.3 7.6 65 61-125 1-70 (71)
85 KOG0129 Predicted RNA-binding 98.9 9E-09 2E-13 115.0 14.1 160 54-214 257-452 (520)
86 KOG0111 Cyclophilin-type pepti 98.9 4.9E-10 1.1E-14 113.2 3.6 80 54-133 8-92 (298)
87 PLN03121 nucleic acid binding 98.9 3.4E-09 7.4E-14 109.9 9.4 73 142-215 6-80 (243)
88 KOG4212 RNA-binding protein hn 98.9 1.9E-08 4E-13 110.0 15.3 72 142-213 537-608 (608)
89 cd00590 RRM RRM (RNA recogniti 98.9 4E-09 8.7E-14 86.5 8.0 70 58-127 1-74 (74)
90 KOG0149 Predicted RNA-binding 98.9 3.8E-09 8.3E-14 108.2 9.1 79 138-217 9-92 (247)
91 COG0724 RNA-binding proteins ( 98.9 4.6E-09 9.9E-14 106.3 9.4 75 141-215 115-194 (306)
92 KOG1456 Heterogeneous nuclear 98.9 3.3E-08 7.2E-13 106.4 16.1 166 51-216 282-491 (494)
93 PF13893 RRM_5: RNA recognitio 98.9 2.6E-09 5.6E-14 86.6 6.0 56 73-128 1-56 (56)
94 PLN03121 nucleic acid binding 98.9 3.4E-09 7.5E-14 109.9 8.4 72 56-128 5-78 (243)
95 KOG0111 Cyclophilin-type pepti 98.9 9E-10 2E-14 111.3 3.7 80 140-219 9-93 (298)
96 KOG0117 Heterogeneous nuclear 98.9 1.1E-08 2.3E-13 112.4 10.9 75 142-216 84-164 (506)
97 KOG0132 RNA polymerase II C-te 98.8 5.6E-09 1.2E-13 120.6 7.7 77 56-133 421-497 (894)
98 KOG0108 mRNA cleavage and poly 98.8 7.9E-09 1.7E-13 116.2 8.6 79 142-220 19-102 (435)
99 KOG0120 Splicing factor U2AF, 98.8 1.1E-08 2.3E-13 116.0 8.6 164 52-217 171-370 (500)
100 KOG0130 RNA-binding protein RB 98.8 6.6E-09 1.4E-13 98.4 5.7 75 143-217 74-153 (170)
101 KOG0112 Large RNA-binding prot 98.8 6.1E-09 1.3E-13 122.0 6.4 160 51-217 367-532 (975)
102 KOG0108 mRNA cleavage and poly 98.8 7.6E-09 1.7E-13 116.4 6.9 76 57-132 19-99 (435)
103 KOG0126 Predicted RNA-binding 98.8 6.9E-10 1.5E-14 109.5 -2.2 75 53-127 32-111 (219)
104 KOG4206 Spliceosomal protein s 98.8 1.3E-08 2.8E-13 103.9 6.8 75 143-217 11-91 (221)
105 KOG0126 Predicted RNA-binding 98.7 2.3E-09 5E-14 105.9 -0.2 74 140-213 34-112 (219)
106 KOG0146 RNA-binding protein ET 98.7 2.5E-08 5.5E-13 103.4 7.3 102 120-226 2-112 (371)
107 KOG0130 RNA-binding protein RB 98.7 2E-08 4.3E-13 95.2 5.7 74 58-131 74-152 (170)
108 KOG0109 RNA-binding protein LA 98.7 1.7E-08 3.7E-13 106.0 5.4 72 143-217 4-75 (346)
109 KOG0131 Splicing factor 3b, su 98.7 2.2E-08 4.8E-13 99.2 5.8 74 141-214 9-87 (203)
110 smart00361 RRM_1 RNA recogniti 98.7 6E-08 1.3E-12 82.6 7.3 57 155-211 2-70 (70)
111 KOG1365 RNA-binding protein Fu 98.7 2.8E-07 6.1E-12 99.7 13.7 162 58-220 163-366 (508)
112 KOG0153 Predicted RNA-binding 98.6 6.9E-08 1.5E-12 103.6 8.1 85 47-132 219-304 (377)
113 KOG4454 RNA binding protein (R 98.6 1.5E-08 3.2E-13 102.8 1.5 137 54-208 7-155 (267)
114 smart00361 RRM_1 RNA recogniti 98.6 1.2E-07 2.5E-12 80.8 6.4 57 69-125 1-69 (70)
115 KOG0153 Predicted RNA-binding 98.5 2.7E-07 5.8E-12 99.1 7.8 79 136-215 223-302 (377)
116 KOG0132 RNA polymerase II C-te 98.5 2E-07 4.3E-12 108.1 7.3 79 141-220 421-499 (894)
117 KOG4210 Nuclear localization s 98.4 3.7E-07 8E-12 98.3 6.0 164 54-218 86-266 (285)
118 KOG0226 RNA-binding proteins [ 98.4 2.4E-07 5.2E-12 96.0 3.8 160 58-217 98-271 (290)
119 KOG4208 Nucleolar RNA-binding 98.2 2.6E-06 5.7E-11 86.2 7.8 82 49-130 42-129 (214)
120 KOG0128 RNA-binding protein SA 98.2 2.3E-07 4.9E-12 108.8 0.1 138 58-216 669-815 (881)
121 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.6E-11 94.2 5.3 78 53-130 236-318 (479)
122 KOG0151 Predicted splicing reg 98.2 2.3E-06 5.1E-11 98.6 7.5 85 45-129 163-255 (877)
123 KOG4661 Hsp27-ERE-TATA-binding 98.1 4.3E-06 9.3E-11 94.1 7.7 76 53-128 402-482 (940)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 98.1 2.9E-06 6.2E-11 85.4 4.9 91 590-680 5-100 (176)
125 KOG0106 Alternative splicing f 98.1 2.2E-06 4.7E-11 88.3 3.8 71 143-216 3-73 (216)
126 KOG4205 RNA-binding protein mu 98.1 2.8E-06 6.1E-11 92.2 4.8 114 55-169 96-215 (311)
127 KOG2193 IGF-II mRNA-binding pr 98.1 6.8E-07 1.5E-11 97.7 0.0 150 58-216 3-157 (584)
128 KOG0415 Predicted peptidyl pro 98.0 5.5E-06 1.2E-10 89.2 5.9 79 139-217 237-320 (479)
129 KOG1457 RNA binding protein (c 98.0 1.7E-05 3.6E-10 81.2 8.9 79 141-219 34-121 (284)
130 KOG4208 Nucleolar RNA-binding 98.0 1.3E-05 2.7E-10 81.4 7.8 78 139-216 47-130 (214)
131 KOG0151 Predicted splicing reg 97.9 1.2E-05 2.5E-10 93.0 6.3 79 138-216 171-257 (877)
132 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.9E-05 4.1E-10 89.2 6.5 74 142-215 406-484 (940)
133 KOG0533 RRM motif-containing p 97.9 3.1E-05 6.8E-10 81.4 7.7 76 54-129 81-160 (243)
134 KOG0533 RRM motif-containing p 97.9 4E-05 8.7E-10 80.6 8.1 79 139-217 81-163 (243)
135 KOG0226 RNA-binding proteins [ 97.8 2.2E-05 4.8E-10 81.7 4.4 75 57-131 191-270 (290)
136 KOG4307 RNA binding protein RB 97.7 5.1E-05 1.1E-09 87.6 7.1 169 48-217 303-515 (944)
137 KOG0116 RasGAP SH3 binding pro 97.7 2.9E-05 6.4E-10 87.4 5.2 73 56-129 288-365 (419)
138 KOG0116 RasGAP SH3 binding pro 97.7 4.5E-05 9.8E-10 85.9 6.4 75 142-217 289-368 (419)
139 PF04059 RRM_2: RNA recognitio 97.7 0.00017 3.6E-09 66.0 7.9 73 57-129 2-85 (97)
140 KOG4209 Splicing factor RNPS1, 97.6 7.2E-05 1.6E-09 78.5 5.5 79 137-216 97-180 (231)
141 KOG4211 Splicing factor hnRNP- 97.6 0.00061 1.3E-08 76.8 13.0 156 55-212 102-354 (510)
142 KOG1548 Transcription elongati 97.6 0.00011 2.4E-09 79.4 7.0 74 142-215 135-220 (382)
143 PF11608 Limkain-b1: Limkain b 97.6 0.00028 6E-09 62.6 7.6 68 57-129 3-75 (90)
144 KOG4676 Splicing factor, argin 97.5 4.8E-05 1E-09 83.1 2.7 147 57-205 8-215 (479)
145 KOG1365 RNA-binding protein Fu 97.5 0.00097 2.1E-08 73.0 12.4 161 55-217 59-244 (508)
146 PF08777 RRM_3: RNA binding mo 97.4 0.00036 7.8E-09 64.6 6.6 79 143-222 3-86 (105)
147 KOG4209 Splicing factor RNPS1, 97.3 0.0002 4.3E-09 75.2 4.7 78 51-129 96-178 (231)
148 KOG4454 RNA binding protein (R 97.3 9.5E-05 2.1E-09 75.7 2.2 77 140-216 8-87 (267)
149 PF11608 Limkain-b1: Limkain b 97.0 0.0029 6.4E-08 56.2 7.3 69 142-215 3-76 (90)
150 KOG1855 Predicted RNA-binding 96.8 0.0014 3E-08 72.9 5.2 73 138-210 228-318 (484)
151 COG5175 MOT2 Transcriptional r 96.8 0.0016 3.5E-08 70.2 5.3 75 56-130 114-202 (480)
152 COG5175 MOT2 Transcriptional r 96.7 0.0053 1.2E-07 66.4 8.1 84 139-222 112-209 (480)
153 KOG0128 RNA-binding protein SA 96.5 0.00053 1.1E-08 81.4 -0.7 147 57-204 572-735 (881)
154 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0066 1.4E-07 49.4 5.7 53 56-110 1-53 (53)
155 KOG0115 RNA-binding protein p5 96.5 0.0037 8.1E-08 65.6 5.3 86 104-200 5-94 (275)
156 KOG1995 Conserved Zn-finger pr 96.4 0.0024 5.2E-08 69.8 3.9 77 141-217 66-155 (351)
157 PF08777 RRM_3: RNA binding mo 96.4 0.008 1.7E-07 55.8 6.8 58 58-116 3-60 (105)
158 KOG1855 Predicted RNA-binding 96.3 0.004 8.7E-08 69.3 4.4 69 48-117 223-310 (484)
159 KOG4849 mRNA cleavage factor I 96.2 0.0078 1.7E-07 65.4 6.3 69 57-125 81-156 (498)
160 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.011 2.4E-07 48.1 5.1 52 142-195 2-53 (53)
161 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.017 3.7E-07 53.3 6.8 73 141-215 6-91 (100)
162 KOG1295 Nonsense-mediated deca 96.1 0.0031 6.6E-08 69.6 2.1 75 590-665 5-81 (376)
163 KOG4210 Nuclear localization s 95.8 0.0056 1.2E-07 66.3 3.0 76 56-132 184-265 (285)
164 KOG2193 IGF-II mRNA-binding pr 95.7 0.012 2.6E-07 65.3 5.0 76 142-220 2-80 (584)
165 KOG1995 Conserved Zn-finger pr 95.6 0.013 2.8E-07 64.2 4.7 79 53-131 63-154 (351)
166 KOG3152 TBP-binding protein, a 95.6 0.0066 1.4E-07 63.8 2.1 68 140-207 73-157 (278)
167 KOG1996 mRNA splicing factor [ 95.5 0.024 5.1E-07 60.7 6.1 63 155-217 300-368 (378)
168 KOG3152 TBP-binding protein, a 95.5 0.01 2.3E-07 62.4 3.4 68 55-122 73-157 (278)
169 KOG4307 RNA binding protein RB 95.4 0.033 7.2E-07 65.3 7.3 72 141-212 867-943 (944)
170 PF07576 BRAP2: BRCA1-associat 95.3 0.1 2.2E-06 49.0 8.7 85 591-678 11-96 (110)
171 KOG2202 U2 snRNP splicing fact 95.2 0.0092 2E-07 62.8 1.9 65 156-220 83-152 (260)
172 PF08952 DUF1866: Domain of un 95.1 0.079 1.7E-06 51.9 7.8 76 139-218 25-109 (146)
173 KOG0112 Large RNA-binding prot 95.1 0.041 8.9E-07 66.3 6.9 80 52-132 451-532 (975)
174 KOG2416 Acinus (induces apopto 94.9 0.067 1.4E-06 62.0 7.7 80 139-219 442-525 (718)
175 KOG2314 Translation initiation 94.7 0.037 7.9E-07 63.7 4.8 70 56-125 58-138 (698)
176 KOG0804 Cytoplasmic Zn-finger 94.5 0.11 2.5E-06 58.5 8.2 81 592-676 74-154 (493)
177 PF05172 Nup35_RRM: Nup53/35/4 94.4 0.088 1.9E-06 48.6 5.8 72 55-128 5-89 (100)
178 KOG2202 U2 snRNP splicing fact 93.9 0.028 6.1E-07 59.3 1.8 57 72-128 84-145 (260)
179 KOG2314 Translation initiation 93.8 0.09 1.9E-06 60.6 5.5 72 141-212 58-140 (698)
180 KOG0129 Predicted RNA-binding 93.5 0.17 3.7E-06 58.0 7.0 61 52-112 366-432 (520)
181 PF08675 RNA_bind: RNA binding 93.3 0.27 5.8E-06 44.0 6.6 53 58-114 11-63 (87)
182 PF15023 DUF4523: Protein of u 92.9 0.32 7E-06 47.5 7.0 76 50-128 80-159 (166)
183 KOG2591 c-Mpl binding protein, 92.7 0.24 5.1E-06 57.2 6.8 78 47-126 166-247 (684)
184 PF04847 Calcipressin: Calcipr 92.7 0.2 4.4E-06 51.1 5.6 63 154-217 8-72 (184)
185 KOG2416 Acinus (induces apopto 92.6 0.087 1.9E-06 61.1 3.2 78 50-128 438-519 (718)
186 KOG4849 mRNA cleavage factor I 92.6 0.15 3.3E-06 55.8 4.8 72 143-214 82-160 (498)
187 KOG4676 Splicing factor, argin 92.2 0.45 9.7E-06 53.0 7.8 71 142-213 8-86 (479)
188 PF15023 DUF4523: Protein of u 90.1 0.94 2E-05 44.4 6.9 75 137-214 82-160 (166)
189 PF08952 DUF1866: Domain of un 89.8 0.49 1.1E-05 46.5 4.8 73 53-129 24-105 (146)
190 KOG2068 MOT2 transcription fac 89.5 0.21 4.6E-06 54.6 2.4 75 57-131 78-163 (327)
191 KOG1996 mRNA splicing factor [ 88.3 0.84 1.8E-05 49.3 5.6 58 71-128 301-364 (378)
192 KOG2591 c-Mpl binding protein, 87.9 1 2.2E-05 52.3 6.3 97 103-211 147-247 (684)
193 PF08675 RNA_bind: RNA binding 87.9 2 4.3E-05 38.6 6.9 55 143-200 10-64 (87)
194 PF10309 DUF2414: Protein of u 87.2 2.7 5.8E-05 35.7 6.9 53 57-113 6-62 (62)
195 KOG4574 RNA-binding protein (c 86.4 0.4 8.7E-06 57.8 2.2 74 143-217 300-375 (1007)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 84.4 2.2 4.7E-05 43.3 6.2 75 141-215 7-97 (176)
197 PF04847 Calcipressin: Calcipr 83.2 1.5 3.2E-05 44.9 4.4 61 69-130 8-70 (184)
198 PF14111 DUF4283: Domain of un 82.2 1.6 3.4E-05 42.1 4.0 116 59-175 18-139 (153)
199 KOG2068 MOT2 transcription fac 79.3 0.86 1.9E-05 50.1 1.2 79 142-220 78-167 (327)
200 KOG4285 Mitotic phosphoprotein 79.3 7.1 0.00015 42.6 7.9 74 141-217 197-271 (350)
201 PF10309 DUF2414: Protein of u 79.1 6.6 0.00014 33.3 6.1 53 142-198 6-62 (62)
202 KOG4574 RNA-binding protein (c 77.7 1.2 2.7E-05 53.8 1.9 74 58-132 300-375 (1007)
203 PF03880 DbpA: DbpA RNA bindin 77.1 4.3 9.3E-05 35.1 4.6 58 152-213 12-74 (74)
204 KOG2135 Proteins containing th 76.8 1.6 3.4E-05 50.0 2.3 62 154-217 386-447 (526)
205 KOG2253 U1 snRNP complex, subu 75.5 2.4 5.2E-05 50.3 3.4 70 139-212 38-107 (668)
206 KOG0115 RNA-binding protein p5 74.8 3.6 7.7E-05 43.9 4.1 59 57-115 32-94 (275)
207 PF11767 SET_assoc: Histone ly 74.7 8.1 0.00018 33.2 5.6 55 152-210 11-65 (66)
208 KOG4285 Mitotic phosphoprotein 73.6 4.8 0.0001 43.9 4.8 58 61-121 202-259 (350)
209 PF07576 BRAP2: BRCA1-associat 73.4 19 0.00042 33.8 8.3 65 141-205 13-81 (110)
210 PF11767 SET_assoc: Histone ly 73.1 7.6 0.00016 33.3 5.0 54 67-124 11-64 (66)
211 KOG2318 Uncharacterized conser 69.7 27 0.00059 41.3 10.0 130 51-213 169-305 (650)
212 KOG2253 U1 snRNP complex, subu 67.0 4.5 9.7E-05 48.1 3.1 70 54-127 38-107 (668)
213 PF07292 NID: Nmi/IFP 35 domai 66.3 5.9 0.00013 35.9 3.1 67 96-163 1-74 (88)
214 PF10567 Nab6_mRNP_bdg: RNA-re 57.5 1.9E+02 0.0041 31.9 12.9 147 52-199 11-212 (309)
215 KOG2135 Proteins containing th 57.4 5 0.00011 46.1 1.2 79 52-132 368-447 (526)
216 PF03880 DbpA: DbpA RNA bindin 52.4 42 0.0009 28.9 5.9 58 66-127 11-73 (74)
217 KOG2891 Surface glycoprotein [ 50.8 6.1 0.00013 42.5 0.6 66 52-118 146-247 (445)
218 KOG0804 Cytoplasmic Zn-finger 39.7 61 0.0013 37.5 6.2 65 141-205 74-142 (493)
219 KOG4410 5-formyltetrahydrofola 37.6 56 0.0012 35.7 5.2 49 57-105 331-379 (396)
220 KOG4483 Uncharacterized conser 33.8 97 0.0021 35.4 6.4 56 141-197 391-446 (528)
221 KOG4019 Calcineurin-mediated s 32.3 28 0.0006 35.7 1.9 73 57-130 11-89 (193)
222 COG5594 Uncharacterized integr 30.7 40 0.00086 41.6 3.1 31 53-83 205-236 (827)
223 KOG4019 Calcineurin-mediated s 30.5 74 0.0016 32.7 4.5 74 143-217 12-91 (193)
224 PF02714 DUF221: Domain of unk 26.4 90 0.002 34.0 4.8 57 96-164 1-57 (325)
225 PF03468 XS: XS domain; Inter 24.8 71 0.0015 30.3 3.1 53 58-110 10-74 (116)
226 COG0696 GpmI Phosphoglyceromut 24.4 1.5E+02 0.0032 34.9 6.0 113 615-731 224-363 (509)
227 PF08544 GHMP_kinases_C: GHMP 23.3 2.2E+02 0.0047 24.2 5.7 44 71-115 37-81 (85)
228 PF03439 Spt5-NGN: Early trans 23.2 1.1E+02 0.0025 27.0 4.0 35 82-116 33-67 (84)
229 COG5638 Uncharacterized conser 21.6 4.3E+02 0.0093 30.5 8.7 141 46-213 136-295 (622)
230 PRK14548 50S ribosomal protein 21.0 1.9E+02 0.0041 26.1 4.8 53 59-111 23-79 (84)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.2e-79 Score=671.87 Aligned_cols=522 Identities=45% Similarity=0.634 Sum_probs=385.9
Q ss_pred CCCcccccCCCceec-cCCCccccccccccccCCCCCCCCccCccccCCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhh
Q 004289 1 MDDLDFFSSVGGMDL-GNDSSYVAQKKSEICIGFSNHELGVCNGAVAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQ 79 (763)
Q Consensus 1 ~~e~D~Fss~GGmEL-~Des~s~g~~~~~~~~~ssng~~g~~n~s~~G~~p~~e~psRtLfVgNLP~~vtEeeL~~lFsk 79 (763)
+||+|+|+++||||| +|.-.+....++. ...++...+++|.++ +|+ || .+|..+|++
T Consensus 1 ~~d~~lf~~~G~~el~~~~~~~~~~~~~~----------~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~ 58 (549)
T KOG4660|consen 1 LEDCDLFSSGGGMELDADSFDNLSVRNSD----------RNSAGFVFPEHPPGE--SRT-FV---------SELSALFEP 58 (549)
T ss_pred CCccccccCCCCCCcccccccchhhcccc----------cCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhc
Confidence 689999999999999 7743322221111 144556678999888 777 88 888999999
Q ss_pred cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHH
Q 004289 80 YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELH 159 (763)
Q Consensus 80 fG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLr 159 (763)
| + +++ +++++.+++.++++|+|.|||..|++++|+
T Consensus 59 ~----------------------------------~-----~p~------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~ 93 (549)
T KOG4660|consen 59 F----------------------------------N-----KPL------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLL 93 (549)
T ss_pred c----------------------------------C-----CCC------CcCCCCcccCccceEEEEecCCcCCHHHHH
Confidence 8 1 111 126677788999999999999999999999
Q ss_pred HHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhHHHHhhcCCcchhhcccCCCC
Q 004289 160 HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRKCLANQLPPELEQEECGSYQ 239 (763)
Q Consensus 160 elFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~rr~~~qq~~q~~~q~e~~~~~ 239 (763)
++|+.||+|++|++++.+++++||+|+|+++|++|+++|++.+|.|++|+ ++...++.+.-+.. -.-..+
T Consensus 94 ~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------~~~~~~ 163 (549)
T KOG4660|consen 94 RIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------TSFLNH 163 (549)
T ss_pred HHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------chhhhh
Confidence 99999999999999999999999999999999999999999999999999 67766652212222 111226
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccccccCccCCCCCcceecccccCccccCCCCcccc
Q 004289 240 QQNSPPNKPTNESAGAFAHGSKSSRITDTCIVSVVPSAVKAPPTESAFHLGISSSVPSLVRMESFGTQSALAEPGHLQGQ 319 (763)
Q Consensus 240 ~gsp~~nsPps~~~~~~~~g~~~ss~~~~~~~q~~~s~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (763)
.+.|++++||+.|+.....+++.++... .+.+|..++++
T Consensus 164 ~~~p~a~s~pgg~~~~~~~g~l~P~~s~-----------------------------------------~~~~~~~~~~~ 202 (549)
T KOG4660|consen 164 FGSPLANSPPGGWPRGQLFGMLSPTRSS-----------------------------------------ILLEHISSVDG 202 (549)
T ss_pred ccchhhcCCCCCCcCCcceeeeccchhh-----------------------------------------hhhhcchhccC
Confidence 6889999999999744333332222221 11222222221
Q ss_pred ccccCCCCCCCCCCCCccccCCCCCCccCCCCCCCCccCCCCCccccccccccccCCCCCcccccCcccccCCCCCCCCC
Q 004289 320 LKFNIRSTPSFHPHSLPECHDGLNKGVRCNSSGTKGANINIKPPEIIDSRHFSRVSSNGHSIGFTEGVFGSASNGSCPRP 399 (763)
Q Consensus 320 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 399 (763)
..-+ +-.+..+. .....++.+.+| ...+.+ + |..+ ++..++.+++
T Consensus 203 ~~~~-~~~~~~~h----q~~~~~~~~~s~-------------------a~~~~~-~--G~~~--------s~~~~v~t~S 247 (549)
T KOG4660|consen 203 SSPG-RETPLLNH----QRFVEFADNRSY-------------------AFSEPR-G--GFLI--------SNSSGVITFS 247 (549)
T ss_pred cccc-ccccchhh----hhhhhhccccch-------------------hhcccC-C--ceec--------CCCCceEEec
Confidence 1111 11111111 111111111111 011111 1 3333 2333444444
Q ss_pred CCcccCCCCCCCCCCCCcCCCCCCCccCcccCCCCCccCCCCCCCccccccccCCCCccccCCCCCCCchhhhccccccC
Q 004289 400 GHQYSWNNSYCPQLPGMMWPNSPSLVSGIFNTYSPTRVHGLPRAPSHMVNTVLPIGSHHVGSAPTVDPSLWERQHAYVAE 479 (763)
Q Consensus 400 g~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~~~ 479 (763)
|+ +++| |++.++ + ++-+.+...++||||+||+..
T Consensus 248 ~~-------------~g~~-------n~~~~~-r------------~~~~~~~~~~~~hi~~~Ps~~------------- 281 (549)
T KOG4660|consen 248 GP-------------GGVW-------NPFPSR-R------------QRQNSSSSHYEHHIGSAPSMH------------- 281 (549)
T ss_pred CC-------------Cccc-------CCcccc-c------------cccccCcccccCccCCCcccc-------------
Confidence 43 2466 444442 1 223445567789999999832
Q ss_pred CcccccccccCcCCcccCCC-Cccccccc--cccccccCCCCCCCCCCCCCCcccccccccccccCCCCcccccCCCCCC
Q 004289 480 SPEASGFHLGSHGSMRISNN-SLHSVEFV--SHNIFPCVGGNGMDMPLPSKNSVFQSHHQRSMMFSGRGQTIPLMNSFDP 556 (763)
Q Consensus 480 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~ 556 (763)
|+.+-+++++.+. +++.|..+ .+..|.+..|++++.. ++|+++.+.++....|.++.-. ....+.
T Consensus 282 -------~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~--s~n~~~e~~~rv~~~f~~~~~~---~~~~~~ 349 (549)
T KOG4660|consen 282 -------HLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFN--SKNVGMESSPRVPKNFEGRRSY---TSQNDY 349 (549)
T ss_pred -------cccccCccccCCCCCCccccccccCCCCccccCccccccc--CCCccccccCCCCccccccccc---cccccc
Confidence 3334555666665 55555433 4445667899998888 9999999999999999877622 333444
Q ss_pred chh---hhhccCCCCCCCcccccccccchhhHhhCCCCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeccccccc
Q 004289 557 PNE---RARNRRNEGAVNQADKKQYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNK 633 (763)
Q Consensus 557 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~YlpiDf~~~ 633 (763)
..+ ..+.||.+....+.+++++.+|+.+|++|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+
T Consensus 350 ~~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nk 428 (549)
T KOG4660|consen 350 PVELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNK 428 (549)
T ss_pred ccccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccc
Confidence 444 66678888777777799999999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeEEEEEecCCccchHHHHHHhcCccccCCCCccEEEEEeeecccHHHHHHHhccCcccCCCCCccceEEecCCCCCCC
Q 004289 634 CNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGD 713 (763)
Q Consensus 634 ~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~v~yA~iQG~~~l~~~f~~s~v~~~~~~~rP~~f~~~g~~~g~ 713 (763)
||||||||||++|+++++||++|||++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ |+.|+
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~ 506 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR 506 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred ccccCCCCCCCCCCCCCCccccc
Q 004289 714 QVPFPMGVNFRTRPGKARSVIHE 736 (763)
Q Consensus 714 ~~~fp~~~n~~~~~~~~r~~~~~ 736 (763)
++++|...+++.+.+..+.....
T Consensus 507 ~~~~p~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 507 EEPEPVKLNQDAGAGHSTNASLK 529 (549)
T ss_pred ccCccccccccCCCCcccchhhh
Confidence 99999999999888877766654
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=5.6e-47 Score=341.20 Aligned_cols=97 Identities=65% Similarity=1.207 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEEE
Q 004289 592 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVAS 671 (763)
Q Consensus 592 rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 671 (763)
|||||||||||||||+||+++|||.|+|+||||||||||+++||+|||||||+++++|++|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccHHHHHHHhc
Q 004289 672 LAYARIQGKAALIAHFQ 688 (763)
Q Consensus 672 v~yA~iQG~~~l~~~f~ 688 (763)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=1.5e-27 Score=260.92 Aligned_cols=163 Identities=23% Similarity=0.421 Sum_probs=145.7
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
..+...++|||+|||++++|++|+++|++||+|++|++ +++++|||||+|.+.++|++|++.|+++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556789999999999999999999999999999874 6778999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 126 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 126 ~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
.|+.+.... ....+|||+|||.++++++|+++|++||+|++|++ ++..++||||+|.+.++|++||++||+
T Consensus 182 ~~a~p~~~~----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred ecccccccc----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 23458999999999999999999999999999876 455679999999999999999999999
Q ss_pred CeeCC--eEEEEEeccCch
Q 004289 201 RYIAG--KQIKLEPSHLRG 217 (763)
Q Consensus 201 ~~I~G--r~LkVe~a~~k~ 217 (763)
..+.+ ++|+|.+++...
T Consensus 258 ~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CccCCCceeEEEEECCccc
Confidence 98866 799999998654
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=2.7e-25 Score=255.87 Aligned_cols=163 Identities=14% Similarity=0.292 Sum_probs=143.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||+|||++++|++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|+.|.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4579999999999999999999999999999984 68899999999999999999999999999999999998654
Q ss_pred CCCCC-------CccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHH
Q 004289 130 PKDNP-------SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 197 (763)
Q Consensus 130 pk~~~-------~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~ 197 (763)
..... ........+|||+||+.++++++|+++|+.||+|++|++ ++..||||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 32211 011123459999999999999999999999999999887 345789999999999999999999
Q ss_pred hCCCeeCCeEEEEEeccCch
Q 004289 198 LNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 198 LnG~~I~Gr~LkVe~a~~k~ 217 (763)
||+.+|+|+.|+|.++.++.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999887543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=4.9e-25 Score=239.66 Aligned_cols=159 Identities=21% Similarity=0.374 Sum_probs=143.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
+..+|||+|||.+++|++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|+.|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4679999999999999999999999999999884 57799999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
++... ....+|||+|||..+++++|+++|+.||.|..+++ ++..++||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76542 23458999999999999999999999999988776 3456899999999999999999999999988
Q ss_pred C--eEEEEEeccCch
Q 004289 205 G--KQIKLEPSHLRG 217 (763)
Q Consensus 205 G--r~LkVe~a~~k~ 217 (763)
| .+|+|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 688999987665
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=1.5e-24 Score=235.90 Aligned_cols=164 Identities=15% Similarity=0.286 Sum_probs=140.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCC--Ccccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHY 127 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~ 127 (763)
..++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|+|..+.| .+|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4578999999999999999999999999988774 46789999999999999999999999999877 5677777
Q ss_pred cCCCCCCCc----------------c------------------------------------------------------
Q 004289 128 SIPKDNPSE----------------K------------------------------------------------------ 137 (763)
Q Consensus 128 a~pk~~~~~----------------~------------------------------------------------------ 137 (763)
+........ .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643321000 0
Q ss_pred ------------------ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHH
Q 004289 138 ------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAA 194 (763)
Q Consensus 138 ------------------~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kA 194 (763)
.....+|||+|||.++++++|+++|++||.|++|++ ++.+||||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000115999999999999999999999999999887 567799999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEeccCchh
Q 004289 195 LRELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 195 L~~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
|++|||..|.||+|+|.|...++.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999988764
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5e-25 Score=225.83 Aligned_cols=161 Identities=17% Similarity=0.315 Sum_probs=145.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
--|||+.|.+.++-++|++.|.+||+|.++++ +.|+|||+||.|.+.++||+||..|+|+.|.+|.||-.|+..|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 37999999999999999999999999998874 8999999999999999999999999999999999999999776
Q ss_pred CCCCcc------------ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 132 DNPSEK------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 132 ~~~~~~------------~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
....-. .....++||||++.-++|++||+.|+.||.|.+||+.+ .+||+||+|.+.|+|.+||.++|
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~mN 221 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQMN 221 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHhc
Confidence 532111 12245999999999999999999999999999999866 47899999999999999999999
Q ss_pred CCeeCCeEEEEEeccCchh
Q 004289 200 SRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 200 G~~I~Gr~LkVe~a~~k~~ 218 (763)
+.+|.|..+|+.|.+....
T Consensus 222 ntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 222 NTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CceeCceEEEEeccccCCC
Confidence 9999999999999987653
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=5.5e-24 Score=246.47 Aligned_cols=167 Identities=19% Similarity=0.366 Sum_probs=148.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccC----CCcccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTR----SGKLDI 125 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~----Gr~L~V 125 (763)
...++|||+|||.++++++|+++|++||+|.++++ .++++|||||+|.+.++|++|++.|+++.+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999999999874 5678999999999999999999999999999 999999
Q ss_pred cccCCCCCCC--------------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcC
Q 004289 126 HYSIPKDNPS--------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYD 187 (763)
Q Consensus 126 ~~a~pk~~~~--------------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d 187 (763)
.++..+.... .......+|||+||+..+++++|+++|+.||+|++|++ ++.++|||||+|.+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSN 335 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCC
Confidence 8886665421 00122348999999999999999999999999999887 56678999999999
Q ss_pred HHHHHHHHHHhCCCeeCCeEEEEEeccCchhHH
Q 004289 188 TRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 188 ~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
.++|.+|+++|||..|.|++|+|.++..++.++
T Consensus 336 ~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 336 PEEANRAVTEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred HHHHHHHHHHhcCCeeCCceeEEEeccCcHHHH
Confidence 999999999999999999999999999998776
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=3.1e-24 Score=244.69 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=140.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh--hhcccCCCcccccccCCCC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL--QNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~L--ng~~l~Gr~L~V~~a~pk~ 132 (763)
|||+|||+|||++++|++|+++|++||+|..|++. +.+|||||+|.+.++|++|++.+ ++..+.|++|+|+|+..+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~-~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML-PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 68999999999999999999999999999999873 57899999999999999999875 6788999999999987654
Q ss_pred CCCcc-------c-cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCc-ccEEEEEEcCHHHHHHHHHHhCCCee
Q 004289 133 NPSEK-------E-INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK-IHQKYIEFYDTRAAEAALRELNSRYI 203 (763)
Q Consensus 133 ~~~~~-------~-~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~s-kG~aFVeF~d~esA~kAL~~LnG~~I 203 (763)
..... . ....+|+|+||++.+++++|+++|+.||+|++|.+..+. +++|||+|.+.++|.+|++.|||.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 22111 0 112389999999999999999999999999999874333 46999999999999999999999999
Q ss_pred CC--eEEEEEeccCch
Q 004289 204 AG--KQIKLEPSHLRG 217 (763)
Q Consensus 204 ~G--r~LkVe~a~~k~ 217 (763)
.+ ++|+|+|++++.
T Consensus 160 ~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 160 YNGCCTLKIEYAKPTR 175 (481)
T ss_pred cCCceEEEEEEecCCC
Confidence 75 699999998754
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=5e-24 Score=240.22 Aligned_cols=163 Identities=23% Similarity=0.367 Sum_probs=143.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++||. |+|+.+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999985 57889999999999999999995 99999999999998
Q ss_pred ccCCCCCCC--------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHH
Q 004289 127 YSIPKDNPS--------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEA 193 (763)
Q Consensus 127 ~a~pk~~~~--------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~k 193 (763)
++....... .......+|||+|||..+++++|+++|+.||.|+.|++. +..+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 865432211 111235799999999999999999999999999998773 4668999999999999999
Q ss_pred HHHHhCCCeeCCeEEEEEeccC
Q 004289 194 ALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 194 AL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999883
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=1.2e-23 Score=239.79 Aligned_cols=164 Identities=22% Similarity=0.252 Sum_probs=141.8
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 53 EHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 53 e~psRtLfVgNLP~-~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
..++++|||+|||+ .+++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..|.|++|+|.+++.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45778999999998 69999999999999999999976566899999999999999999999999999999999987543
Q ss_pred CCCCc------------c---------------------ccccceeEEeccCCCCCHHHHHHHhcccCc--eeEeeecCC
Q 004289 132 DNPSE------------K---------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRETPQ 176 (763)
Q Consensus 132 ~~~~~------------~---------------------~~~~~tLfVgNLp~svTeedLrelFs~fGe--VkeIrit~~ 176 (763)
..... + .....+|||+|||.++++++|+++|+.||. |+.|++.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 21000 0 012358999999999999999999999998 888887443
Q ss_pred c---ccEEEEEEcCHHHHHHHHHHhCCCeeCCeE------EEEEeccCc
Q 004289 177 K---IHQKYIEFYDTRAAEAALRELNSRYIAGKQ------IKLEPSHLR 216 (763)
Q Consensus 177 s---kG~aFVeF~d~esA~kAL~~LnG~~I~Gr~------LkVe~a~~k 216 (763)
. +++|||+|.+.++|.+||..||+..|.++. |+|.|++++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3 789999999999999999999999999974 999999864
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=5.3e-23 Score=236.51 Aligned_cols=162 Identities=21% Similarity=0.375 Sum_probs=134.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccC-CCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~-Gr~L~V~~a~ 129 (763)
..++|||+|||.+++|++|+++|++||+|.+|++ +++++|||||+|.+.++|++||+.|++..+. ++.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 3479999999999999999999999999999884 6789999999999999999999999987774 4544332211
Q ss_pred --------------------------------------------------------------------------------
Q 004289 130 -------------------------------------------------------------------------------- 129 (763)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (763)
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence
Q ss_pred ----CCCCCCcc-ccccceeEEeccCCCCCHHHHHHHhccc--CceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 004289 130 ----PKDNPSEK-EINQGTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY 202 (763)
Q Consensus 130 ----pk~~~~~~-~~~~~tLfVgNLp~svTeedLrelFs~f--GeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~ 202 (763)
++....+. .....+|||+||+.++++++|+++|+.| |+|++|++ .++||||+|.+.++|++|+++||+.+
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 00000000 0013479999999999999999999999 99999976 36799999999999999999999999
Q ss_pred eCCeEEEEEeccCchhH
Q 004289 203 IAGKQIKLEPSHLRGLR 219 (763)
Q Consensus 203 I~Gr~LkVe~a~~k~~r 219 (763)
|.|+.|+|+|+++...+
T Consensus 294 i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDKK 310 (578)
T ss_pred ECCEEEEEEEccCCCcc
Confidence 99999999999987643
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=1.1e-23 Score=243.86 Aligned_cols=158 Identities=20% Similarity=0.346 Sum_probs=141.3
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
+|||+|||+++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999885 57889999999999999999999999999999999999975322
Q ss_pred CCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 004289 133 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 208 (763)
Q Consensus 133 ~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~L 208 (763)
..+....++|||+||+.++++++|+++|++||.|.+|++ .+.++|||||+|.+.++|.+|++.|||..+.++.|
T Consensus 82 --~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 --SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred --cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 222234568999999999999999999999999999877 34578999999999999999999999999999999
Q ss_pred EEEeccCch
Q 004289 209 KLEPSHLRG 217 (763)
Q Consensus 209 kVe~a~~k~ 217 (763)
.|.....+.
T Consensus 160 ~v~~~~~~~ 168 (562)
T TIGR01628 160 YVGRFIKKH 168 (562)
T ss_pred EEecccccc
Confidence 998766544
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=9.6e-24 Score=227.23 Aligned_cols=163 Identities=20% Similarity=0.372 Sum_probs=142.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcc-cCC--Cccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDIH 126 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~-l~G--r~L~V~ 126 (763)
..-+||||.||..++|.||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|+++. |.| .+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 346999999999999999999999999999886 478899999999999999999999999854 666 567888
Q ss_pred ccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCC-
Q 004289 127 YSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSR- 201 (763)
Q Consensus 127 ~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~- 201 (763)
|+....+ +.....+|||+-|+..++|.|++++|++||.|++|.+ .+.+|||+||+|.+.+.|..||++|||.
T Consensus 113 ~Ad~E~e---r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERE---RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhh---ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8754333 2244678999999999999999999999999999887 5677999999999999999999999995
Q ss_pred eeCC--eEEEEEeccCchhHH
Q 004289 202 YIAG--KQIKLEPSHLRGLRK 220 (763)
Q Consensus 202 ~I~G--r~LkVe~a~~k~~rr 220 (763)
.+.| .+|.|+|+.++.+|.
T Consensus 190 tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeccCCCceEEEecccCCCch
Confidence 4655 699999999887664
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.7e-22 Score=218.64 Aligned_cols=162 Identities=22% Similarity=0.405 Sum_probs=139.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccC-CCccccccc-
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYS- 128 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~-Gr~L~V~~a- 128 (763)
-+-||||.||.++.|+||.-+|++.|+|.+++ ..+.+||||||.|.+.++|++|++.||+++|+ |+.|.|..+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 46899999999999999999999999999998 37899999999999999999999999999886 666655322
Q ss_pred --------------------------------------------------------------------------------
Q 004289 129 -------------------------------------------------------------------------------- 128 (763)
Q Consensus 129 -------------------------------------------------------------------------------- 128 (763)
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence
Q ss_pred ---CCCCCCCccc-cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 129 ---IPKDNPSEKE-INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 129 ---~pk~~~~~~~-~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
.|+.+..++. .....|||.||+.++|+|.|+++|+.||+|..|+.. |.||||.|.+.++|.+||+.+||++|.
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCceec
Confidence 1211111110 113599999999999999999999999999998764 669999999999999999999999999
Q ss_pred CeEEEEEeccCchhHH
Q 004289 205 GKQIKLEPSHLRGLRK 220 (763)
Q Consensus 205 Gr~LkVe~a~~k~~rr 220 (763)
|..|+|.+++|..+++
T Consensus 320 G~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDKKK 335 (506)
T ss_pred CceEEEEecCChhhhc
Confidence 9999999999988765
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=1e-22 Score=232.41 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=136.2
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhc------------CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQY------------GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT 118 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskf------------G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l 118 (763)
......|+|||||||+++++++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|++|| +|+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 345567899999999999999999999975 34555554 678999999999999999999 5999999
Q ss_pred CCCcccccccCCCCCC----------------C---------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee
Q 004289 119 RSGKLDIHYSIPKDNP----------------S---------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 173 (763)
Q Consensus 119 ~Gr~L~V~~a~pk~~~----------------~---------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri 173 (763)
.|+.|.|......... . .......+|||+|||..+++++|+++|+.||.|+.+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999643211100 0 00112358999999999999999999999999998776
Q ss_pred -----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 174 -----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 174 -----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
++..+|||||+|.+.++|.+|++.|||..|.|++|+|.++..
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 456789999999999999999999999999999999999874
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=4.8e-21 Score=218.72 Aligned_cols=163 Identities=18% Similarity=0.302 Sum_probs=136.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
...++|||+|||..+++++|+++|++||.|..+.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999998874 5779999999999999999999999999999999999987
Q ss_pred CCCCCCCc------------------------cccccceeEEeccCCC--C--------CHHHHHHHhcccCceeEeeec
Q 004289 129 IPKDNPSE------------------------KEINQGTLVVFNLDSS--V--------SNDELHHIFGVYGEIKEIRET 174 (763)
Q Consensus 129 ~pk~~~~~------------------------~~~~~~tLfVgNLp~s--v--------TeedLrelFs~fGeVkeIrit 174 (763)
........ ......+|+|.|+... + ..++|+++|++||.|+.|.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54322100 0123458899998532 1 236899999999999999873
Q ss_pred C--------CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 175 P--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 175 ~--------~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
. ..+|++||+|.++++|.+|+.+|||..|.|+.|.|.|....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 2 23589999999999999999999999999999999998753
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.2e-21 Score=196.67 Aligned_cols=162 Identities=21% Similarity=0.375 Sum_probs=146.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
...+|.|.-||.++|++||+.||...|+|++|+ +++.+.||+||.|-+++||++|+..|||..+..+.|+|.|++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 446899999999999999999999999999998 589999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
|..+.. ....|||.+||..+|..||+++|++||.|.--|+ ++.+||.+||+|+-..+|+.||+.|||..-.
T Consensus 120 PSs~~I----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 120 PSSDSI----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred CChhhh----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 876543 2347999999999999999999999999866443 7889999999999999999999999998877
Q ss_pred C--eEEEEEeccCchhHH
Q 004289 205 G--KQIKLEPSHLRGLRK 220 (763)
Q Consensus 205 G--r~LkVe~a~~k~~rr 220 (763)
| .+|.|+|+....+++
T Consensus 196 g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKT 213 (360)
T ss_pred CCCCCeEEEecCCccccc
Confidence 6 699999998765443
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=5.1e-21 Score=187.23 Aligned_cols=161 Identities=21% Similarity=0.291 Sum_probs=141.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
...||||+||+..++++.|.+||-+.|+|..++ ++.+++|||||+|.++|+|+-|++-|+...|.|++|+|.-+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 456999999999999999999999999999998 477899999999999999999999999999999999997765
Q ss_pred CCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeE---e-e--ecCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE---I-R--ETPQKIHQKYIEFYDTRAAEAALRELNSRYI 203 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVke---I-r--it~~skG~aFVeF~d~esA~kAL~~LnG~~I 203 (763)
+. ..+......|||+||++.+++..|.++|+.||.+.. | + .++.+++++||.|.+.+.+.+|+..|||+.+
T Consensus 88 -~~--~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 88 -AH--QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred -cc--cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 11 112222358999999999999999999999999866 2 2 3678899999999999999999999999999
Q ss_pred CCeEEEEEeccCchh
Q 004289 204 AGKQIKLEPSHLRGL 218 (763)
Q Consensus 204 ~Gr~LkVe~a~~k~~ 218 (763)
+.+++.|+++..++.
T Consensus 165 ~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDT 179 (203)
T ss_pred cCCceEEEEEEecCC
Confidence 999999999876653
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=2.9e-21 Score=199.98 Aligned_cols=147 Identities=24% Similarity=0.354 Sum_probs=137.4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCCcc
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEK 137 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~ 137 (763)
+|||||||..+++.+|+.||++||+|.+|.+ -|.||||..+|...|+.|++.|++..|+|..|.|+-++.|.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs----- 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS----- 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC-----
Confidence 6999999999999999999999999999997 56799999999999999999999999999999998887663
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
+...+|+|+||.+.++.+||+..|++||.|.+|++. |+|+||.|.-.++|..|++.|++.+|.|++|+|..+..+
T Consensus 76 -k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 -KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred -CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 446689999999999999999999999999999984 679999999999999999999999999999999998754
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.84 E-value=5.7e-20 Score=207.32 Aligned_cols=162 Identities=22% Similarity=0.338 Sum_probs=137.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999999884 457899999999999999999999999999999999999531
Q ss_pred CCCC----------------------------------------------------------------------------
Q 004289 131 KDNP---------------------------------------------------------------------------- 134 (763)
Q Consensus 131 k~~~---------------------------------------------------------------------------- 134 (763)
....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1000
Q ss_pred --------Cc--cccccceeEEeccCCCCC----------HHHHHHHhcccCceeEeeec-CCcccEEEEEEcCHHHHHH
Q 004289 135 --------SE--KEINQGTLVVFNLDSSVS----------NDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAEA 193 (763)
Q Consensus 135 --------~~--~~~~~~tLfVgNLp~svT----------eedLrelFs~fGeVkeIrit-~~skG~aFVeF~d~esA~k 193 (763)
.. ......+|+|.||....+ .+||++.|++||.|++|.+. +...|++||+|.++++|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 00 001235788899855443 37899999999999999884 7778999999999999999
Q ss_pred HHHHhCCCeeCCeEEEEEeccCch
Q 004289 194 ALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 194 AL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
|++.|||..+.|+.|.|.|.....
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcHHH
Confidence 999999999999999999987654
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=199.79 Aligned_cols=162 Identities=17% Similarity=0.290 Sum_probs=143.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.||||++||+.++.++|.++|+.+|+|..+.+ ...++||+||+|.-.+|+++|++.+.+..|.|+.|+|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999884 4568999999999999999999999999999999999998765
Q ss_pred CCCCc--------------------c--ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec----CCcccEEEEEE
Q 004289 132 DNPSE--------------------K--EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEF 185 (763)
Q Consensus 132 ~~~~~--------------------~--~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit----~~skG~aFVeF 185 (763)
....+ . +...-.|.|.|||+.+.+.+|+.+|+.||.|.+|.|. +.-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43210 0 0113489999999999999999999999999999983 33368999999
Q ss_pred cCHHHHHHHHHHhCCCeeCCeEEEEEeccCchh
Q 004289 186 YDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 186 ~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
.+..+|.+||+.+|+..|.||+|-|.||-++..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999998764
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=6e-19 Score=194.69 Aligned_cols=166 Identities=20% Similarity=0.357 Sum_probs=143.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
-.|+|+|||+.+.+.+|+.+|+.||.|.+|.+ .++-.|||||+|.+..+|++|++.+|+..|.||+|-|.|+.+|+
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 38999999999999999999999999999985 45566999999999999999999999999999999999987654
Q ss_pred CCC-----------------------------------------cc--cc------------------------------
Q 004289 133 NPS-----------------------------------------EK--EI------------------------------ 139 (763)
Q Consensus 133 ~~~-----------------------------------------~~--~~------------------------------ 139 (763)
.-. +. +.
T Consensus 198 ~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~ 277 (678)
T KOG0127|consen 198 TYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESD 277 (678)
T ss_pred cccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCccc
Confidence 200 00 00
Q ss_pred -------------ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHh---
Q 004289 140 -------------NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALREL--- 198 (763)
Q Consensus 140 -------------~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~L--- 198 (763)
...||||.|||+++|+++|.+.|++||+|+++.+ +++++|.|||.|.+..+|..||.+.
T Consensus 278 k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa 357 (678)
T KOG0127|consen 278 KKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPA 357 (678)
T ss_pred chhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCcc
Confidence 0159999999999999999999999999999665 8889999999999999999999876
Q ss_pred --CC-CeeCCeEEEEEeccCchhHHHH
Q 004289 199 --NS-RYIAGKQIKLEPSHLRGLRKCL 222 (763)
Q Consensus 199 --nG-~~I~Gr~LkVe~a~~k~~rr~~ 222 (763)
.| ..+.||.|+|..+-++.+-..|
T Consensus 358 ~e~g~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 358 SEDGSVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred CCCceEEEeccEEeeeeccchHHHHHH
Confidence 34 6688999999999988766545
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.5e-19 Score=189.51 Aligned_cols=158 Identities=15% Similarity=0.332 Sum_probs=138.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
++||||.|.+.+.|+.|+..|..||+|++|. .++++||||||+|+-+|.|+.|++.|||.+++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 4899999999999999999999999999998 48999999999999999999999999999999999999743211
Q ss_pred --CCCC-----ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 132 --DNPS-----EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 132 --~~~~-----~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
..+. +....-.+|||..+.++++++||+.+|+.||+|+.|.+ ....|||+||||.+..+...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 1110 11123459999999999999999999999999999988 34458999999999999999999999
Q ss_pred CCeeCCeEEEEEecc
Q 004289 200 SRYIAGKQIKLEPSH 214 (763)
Q Consensus 200 G~~I~Gr~LkVe~a~ 214 (763)
-++++|..|+|..+-
T Consensus 274 lFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCV 288 (544)
T ss_pred hhhcccceEeccccc
Confidence 999999999998665
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.1e-18 Score=190.32 Aligned_cols=149 Identities=19% Similarity=0.331 Sum_probs=135.1
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCC
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP 134 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~ 134 (763)
.|||| ++|||..|.++|+.+|+|.++++ .. +-|||||.|.++++|++||++++-..+.|++++|-|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 68999 89999999999999999998873 44 999999999999999999999999999999999999753222
Q ss_pred CccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 135 SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 135 ~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
.|||.||+++++..+|.++|+.||+|.+|++ ....+|| ||+|.+.++|.+|++.|||..+.+++|.|.
T Consensus 78 --------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 78 --------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred --------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 2999999999999999999999999999987 2336889 999999999999999999999999999999
Q ss_pred eccCchhHH
Q 004289 212 PSHLRGLRK 220 (763)
Q Consensus 212 ~a~~k~~rr 220 (763)
....+.+|.
T Consensus 149 ~~~~~~er~ 157 (369)
T KOG0123|consen 149 LFERKEERE 157 (369)
T ss_pred eccchhhhc
Confidence 998887653
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=2.9e-18 Score=194.61 Aligned_cols=160 Identities=22% Similarity=0.360 Sum_probs=139.9
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 59 LLLRKINSNIEDSELKALFEQYGDVRTFYRA--------SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 59 LfVgNLP~~vtEeeL~~lFskfG~I~sv~~t--------gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
|||.||+++++.++|..+|.++|.|.++.+. ..+.|||||+|.+.++|++|++.|+|+.|.|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999741 12459999999999999999999999999999999999872
Q ss_pred CCC-----CCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCC-----cccEEEEEEcCHHHHHHHHHHhCC
Q 004289 131 KDN-----PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ-----KIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 131 k~~-----~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~-----skG~aFVeF~d~esA~kAL~~LnG 200 (763)
+.. ........+.|.|.|||+..+..+++++|..||.|+.|++... .+|||||+|-++++|.+|+++|..
T Consensus 598 k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 598 KPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS 677 (725)
T ss_pred ccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc
Confidence 221 1111122569999999999999999999999999999998433 378999999999999999999999
Q ss_pred CeeCCeEEEEEeccCchh
Q 004289 201 RYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 201 ~~I~Gr~LkVe~a~~k~~ 218 (763)
.-++||+|.++|+.....
T Consensus 678 THlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 678 THLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cceechhhheehhccchH
Confidence 999999999999998764
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.2e-17 Score=170.88 Aligned_cols=161 Identities=15% Similarity=0.271 Sum_probs=136.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCC--Cccccccc
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYS 128 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~a 128 (763)
..+|||.+||..+|..||..+|++||.|..-+ +++.+||.+||.|...++|++|++.|||+.=.| .+|.|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 45999999999999999999999999887655 589999999999999999999999999987665 45777776
Q ss_pred CCCCCCC----------------------------------------------------------cccccc-ceeEEecc
Q 004289 129 IPKDNPS----------------------------------------------------------EKEINQ-GTLVVFNL 149 (763)
Q Consensus 129 ~pk~~~~----------------------------------------------------------~~~~~~-~tLfVgNL 149 (763)
....... ...... -+|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 3221100 000001 29999999
Q ss_pred CCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 150 DSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 150 p~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.++.+|.-|-++|.+||.|..|++ +.+.|||+||.+.+.++|..||..|||..+++|.|.|.|...+
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999988776 5677999999999999999999999999999999999997654
No 28
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=5e-17 Score=164.56 Aligned_cols=163 Identities=24% Similarity=0.377 Sum_probs=145.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHH----HHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKA----LFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~----lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
+..|..||||.||+..+..++|++ +|++||.|..|.. +.+.+|.|||.|.+.+.|-.|+++|+|..+.|+.++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445677999999999999999998 9999999999884 7889999999999999999999999999999999999
Q ss_pred cccCCCCCCCcc----------------------------------------------ccccceeEEeccCCCCCHHHHH
Q 004289 126 HYSIPKDNPSEK----------------------------------------------EINQGTLVVFNLDSSVSNDELH 159 (763)
Q Consensus 126 ~~a~pk~~~~~~----------------------------------------------~~~~~tLfVgNLp~svTeedLr 159 (763)
+|+..+.+...+ .....+|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 998765431111 1234589999999999999999
Q ss_pred HHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEecc
Q 004289 160 HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSH 214 (763)
Q Consensus 160 elFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~-Gr~LkVe~a~ 214 (763)
.+|.+|.--++|++....++.+||+|.+...|..|..+|.+..|. ...|+|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999998888999999999999999999999999887 7888888875
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.7e-17 Score=169.35 Aligned_cols=181 Identities=20% Similarity=0.336 Sum_probs=136.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 133 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~ 133 (763)
..-|||||+||+.+|||+-|..||.+.|.|..+++-.. .|.|.|+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------hhccccccCccc
Confidence 34599999999999999999999999999999886111 455666654444
Q ss_pred CCccccc-cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 134 PSEKEIN-QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 134 ~~~~~~~-~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
.+..+.+ +-.+||+.|...++.++||+.|.+||+|.++++ +.++|||+||.|...++|+.||..|||+.|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 4444444 348999999999999999999999999988765 7889999999999999999999999999999999
Q ss_pred EEEEeccCchhHHHHhhcCCcchhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCc
Q 004289 208 IKLEPSHLRGLRKCLANQLPPELEQEECGSYQQQNSPPNKPTNESAGAFAHGSKSSRITDTCIVSVVPSAVKAPPTE 284 (763)
Q Consensus 208 LkVe~a~~k~~rr~~~qq~~q~~~q~e~~~~~~gsp~~nsPps~~~~~~~~g~~~ss~~~~~~~q~~~s~~~~p~~~ 284 (763)
||.-|+..|..+. . ...+.=++.- .+. +|-.+ ++..|.+++.-.|...+|.| +||+.
T Consensus 134 IRTNWATRKp~e~----n-~~~ltfdeV~--NQs-----sp~Nt---sVY~G~I~~~lte~~mr~~F-----s~fG~ 190 (321)
T KOG0148|consen 134 IRTNWATRKPSEM----N-GKPLTFDEVY--NQS-----SPDNT---SVYVGNIASGLTEDLMRQTF-----SPFGP 190 (321)
T ss_pred eeccccccCcccc----C-CCCccHHHHh--ccC-----CCCCc---eEEeCCcCccccHHHHHHhc-----ccCCc
Confidence 9999998776322 0 0011111111 111 22222 45567777777777777777 56664
No 30
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=2.1e-14 Score=155.55 Aligned_cols=157 Identities=19% Similarity=0.287 Sum_probs=130.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHHh-hcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFE-QYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFs-kfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
.|.+||.|||+++...+|+.||. +.|+|..|.. .+|.+|||.|+|.++|.+++|++.|+.+.+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46799999999999999999998 7899999873 899999999999999999999999999999999998833110
Q ss_pred ----------------------------------------------CCC--CC--------c------------------
Q 004289 131 ----------------------------------------------KDN--PS--------E------------------ 136 (763)
Q Consensus 131 ----------------------------------------------k~~--~~--------~------------------ 136 (763)
+++ .. +
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 00 0
Q ss_pred -------cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 137 -------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 137 -------~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
..+.+..+||.||++.+..+.|++.|.--|+|..|.+ .+.+++++.++|..+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 0001458999999999999999999999999988764 45678999999999999999999999877777
Q ss_pred eEEEEEe
Q 004289 206 KQIKLEP 212 (763)
Q Consensus 206 r~LkVe~ 212 (763)
++..+..
T Consensus 284 ~~~~~Rl 290 (608)
T KOG4212|consen 284 RRMTVRL 290 (608)
T ss_pred ccceeec
Confidence 7766665
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.3e-16 Score=173.02 Aligned_cols=161 Identities=17% Similarity=0.347 Sum_probs=142.5
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCC
Q 004289 59 LLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPS 135 (763)
Q Consensus 59 LfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~ 135 (763)
|||.||++++|..+|.++|+.||+|.+|++ ..-++|| ||+|.+.++|++|++.+||..+.+++|.|.....+....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 999999999999999999999999999995 2338999 999999999999999999999999999998776665532
Q ss_pred ccc----cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 136 EKE----INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 136 ~~~----~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
... ..-..++|.|++.++++++|.++|..||.|..+.+ .+..++|+||+|.+.++|.+|++.|++..+.++.
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~ 237 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKE 237 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccc
Confidence 222 22348999999999999999999999999999776 4556899999999999999999999999999999
Q ss_pred EEEEeccCchhHH
Q 004289 208 IKLEPSHLRGLRK 220 (763)
Q Consensus 208 LkVe~a~~k~~rr 220 (763)
+.|..+..+.++.
T Consensus 238 ~~V~~aqkk~e~~ 250 (369)
T KOG0123|consen 238 LYVGRAQKKSERE 250 (369)
T ss_pred eeecccccchhhH
Confidence 9999998866655
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.66 E-value=2e-16 Score=170.12 Aligned_cols=163 Identities=10% Similarity=0.257 Sum_probs=142.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||++|+++++++.|++.|.+||+|..|.+ +++++||+||+|.+.+...++|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5789999999999999999999999999999984 78899999999999999998885 45577999999999999
Q ss_pred CCCCCCccccc--cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 004289 130 PKDNPSEKEIN--QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 202 (763)
Q Consensus 130 pk~~~~~~~~~--~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~ 202 (763)
++++..+.... ..+|||+.||.++++++|++.|++||.|..+.+ +.+.++|+||.|.+.+.+.+++. ..-.+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 98876544333 559999999999999999999999998877543 56778999999999999999875 66788
Q ss_pred eCCeEEEEEeccCchhH
Q 004289 203 IAGKQIKLEPSHLRGLR 219 (763)
Q Consensus 203 I~Gr~LkVe~a~~k~~r 219 (763)
|+++.++|..|.|++..
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999998743
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=6.1e-15 Score=170.76 Aligned_cols=75 Identities=15% Similarity=0.341 Sum_probs=69.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||+|||+++++++|+++|++||+|.++++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999984 56799999999999999999999999999999999986644
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.3e-16 Score=160.83 Aligned_cols=165 Identities=18% Similarity=0.343 Sum_probs=136.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcc-cCC--Ccccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDIHY 127 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~-l~G--r~L~V~~ 127 (763)
..|+||||-|...-.|+|++.+|..||.|.+|.+ .+.+||||||.|.+..+|+.||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4689999999999999999999999999999984 67899999999999999999999999843 444 2233333
Q ss_pred cCCCCC--------------------------------------------------------------------------
Q 004289 128 SIPKDN-------------------------------------------------------------------------- 133 (763)
Q Consensus 128 a~pk~~-------------------------------------------------------------------------- 133 (763)
+...++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 210000
Q ss_pred -----------------------------------------------------------C--------------------
Q 004289 134 -----------------------------------------------------------P-------------------- 134 (763)
Q Consensus 134 -----------------------------------------------------------~-------------------- 134 (763)
+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0
Q ss_pred ---------------------CccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCH
Q 004289 135 ---------------------SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDT 188 (763)
Q Consensus 135 ---------------------~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~ 188 (763)
......-..|||--||.+..+.||.++|-.||.|.+.++ +..+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000001249999999999999999999999999988654 788899999999999
Q ss_pred HHHHHHHHHhCCCeeCCeEEEEEeccCchhH
Q 004289 189 RAAEAALRELNSRYIAGKQIKLEPSHLRGLR 219 (763)
Q Consensus 189 esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~r 219 (763)
.+|+.||.+|||+.|+-|+|||.+.+|+++.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999998753
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.4e-15 Score=147.81 Aligned_cols=149 Identities=17% Similarity=0.249 Sum_probs=126.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCC--cccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASK--HCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgk--skGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
..+++|||+|||.++.|.||..+|.|||.|+.|.++.. .-+||||+|+|.++|+.||..-+|..+.|+.|+|+|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999986444 3579999999999999999999999999999999997543
Q ss_pred CCC----------------------CccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHH
Q 004289 132 DNP----------------------SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTR 189 (763)
Q Consensus 132 ~~~----------------------~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~e 189 (763)
... ......+..+.|.+||++-+++||++...+-|+|-...+. +.+++.|+|-..|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~--rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ--RDGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee--cccceeeeeeehh
Confidence 210 0111124489999999999999999999999999776654 3469999999999
Q ss_pred HHHHHHHHhCCCeeC
Q 004289 190 AAEAALRELNSRYIA 204 (763)
Q Consensus 190 sA~kAL~~LnG~~I~ 204 (763)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999876554
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=3.1e-16 Score=174.44 Aligned_cols=165 Identities=22% Similarity=0.314 Sum_probs=140.2
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
..++..||||+-.|.-.++..+|.++|+.+|+|+.|. .+..++|.|||+|.|.+....|+ .|.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 3445567999999999999999999999999999987 37779999999999999999999 79999999999999
Q ss_pred cccCCCCCCCcc----------ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHH
Q 004289 126 HYSIPKDNPSEK----------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRA 190 (763)
Q Consensus 126 ~~a~pk~~~~~~----------~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~es 190 (763)
+......+.... ..+-..|||+||-.++++++|+.+|+.||.|..|.+ ++..+||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 765322221000 001113999999999999999999999999988765 67789999999999999
Q ss_pred HHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 191 AEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 191 A~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
|.+|+..|||.+|.|+.|+|.....+
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999876643
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=165.29 Aligned_cols=162 Identities=16% Similarity=0.348 Sum_probs=137.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcc-cCC--Cccccccc
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKL-TRS--GKLDIHYS 128 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~-l~G--r~L~V~~a 128 (763)
.++||||-|+..++|.||+++|.+||.|++|++ .+.+||||||.|.+.|.|..||++||+.. +.| .+|.|+|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 679999999999999999999999999999984 67899999999999999999999999954 665 45777776
Q ss_pred CCCCCCCcccc---------------------------------------------------------------------
Q 004289 129 IPKDNPSEKEI--------------------------------------------------------------------- 139 (763)
Q Consensus 129 ~pk~~~~~~~~--------------------------------------------------------------------- 139 (763)
.++.++..+..
T Consensus 204 Dtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~ 283 (510)
T KOG0144|consen 204 DTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAA 283 (510)
T ss_pred ccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhh
Confidence 54432000000
Q ss_pred --------------------------------------------------------------------------------
Q 004289 140 -------------------------------------------------------------------------------- 139 (763)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (763)
T Consensus 284 ~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~ 363 (510)
T KOG0144|consen 284 ATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAAS 363 (510)
T ss_pred cccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccccc
Confidence
Q ss_pred -----------------------------------------------------------ccceeEEeccCCCCCHHHHHH
Q 004289 140 -----------------------------------------------------------NQGTLVVFNLDSSVSNDELHH 160 (763)
Q Consensus 140 -----------------------------------------------------------~~~tLfVgNLp~svTeedLre 160 (763)
.-..|||.+||.+.-+.||-.
T Consensus 364 ~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~ 443 (510)
T KOG0144|consen 364 LANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIA 443 (510)
T ss_pred ccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHH
Confidence 013899999999999999999
Q ss_pred HhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 161 IFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 161 lFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.|..||.|++.++ ++-+|-|+||.|++..+|..||..|||+.|+.|+++|...+.+.
T Consensus 444 ~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 444 TFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999998654 67778899999999999999999999999999999999887654
No 38
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=139.07 Aligned_cols=150 Identities=18% Similarity=0.281 Sum_probs=116.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE--eCCCc----ccEEEEEeCCHHHHHHHHHHhhhcccC---CCcccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKH----CGFVTISYYDIRAARNAMKSLQNKLTR---SGKLDI 125 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~--~tgks----kGfAFV~F~d~e~AekAl~~Lng~~l~---Gr~L~V 125 (763)
..|||||.+||.++.-.||..||..|--.+.+. .+.+. +-+|||+|.+..+|+.|+.+|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999886555443 33333 479999999999999999999999886 566777
Q ss_pred cccCCCCC-------C--------------------------------------------Ccc-----------------
Q 004289 126 HYSIPKDN-------P--------------------------------------------SEK----------------- 137 (763)
Q Consensus 126 ~~a~pk~~-------~--------------------------------------------~~~----------------- 137 (763)
++++.-.. . .+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 66432100 0 000
Q ss_pred --------------ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCC-cccEEEEEEcCHHHHHHHHHHhCCCe
Q 004289 138 --------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ-KIHQKYIEFYDTRAAEAALRELNSRY 202 (763)
Q Consensus 138 --------------~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~-skG~aFVeF~d~esA~kAL~~LnG~~ 202 (763)
...+.||||.||..+++||+|+++|+.|-....+++..+ .--.+|++|.+.+.|..||..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 001459999999999999999999999987766666322 23389999999999999999999977
Q ss_pred eC
Q 004289 203 IA 204 (763)
Q Consensus 203 I~ 204 (763)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 64
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.48 E-value=1.3e-13 Score=153.86 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=128.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
|-+.||||||..+++|+.|+.+|+.||.|..|.. ++.++||+||+|.+.++|++|+..|||.+|.|+.|+|..-.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3445999999999999999999999999999872 78999999999999999999999999999999999883311
Q ss_pred CCCCCC--------------------------------------------------------------------ccc---
Q 004289 130 PKDNPS--------------------------------------------------------------------EKE--- 138 (763)
Q Consensus 130 pk~~~~--------------------------------------------------------------------~~~--- 138 (763)
.+-+.. .+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 100000 000
Q ss_pred ----cccceeEEeccCCC--CC--------HHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 139 ----INQGTLVVFNLDSS--VS--------NDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 139 ----~~~~tLfVgNLp~s--vT--------eedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
....++.+.|+=.. .| .||+.+-|.+||+|..|.+...+-|+.||.|.+.+.|..|+++|||..|.
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 01123334443111 11 27788899999999999998888899999999999999999999999999
Q ss_pred CeEEEEEeccCc
Q 004289 205 GKQIKLEPSHLR 216 (763)
Q Consensus 205 Gr~LkVe~a~~k 216 (763)
||.|.+.|-...
T Consensus 517 gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 517 GRMITAKYLPLE 528 (549)
T ss_pred cceeEEEEeehh
Confidence 999999997643
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=3.5e-14 Score=144.99 Aligned_cols=153 Identities=21% Similarity=0.337 Sum_probs=130.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCC--
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP-- 134 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~-- 134 (763)
..||||+||+.+.+.+|..+|..||.|..+.+ -.||+||+|.|..+|+.|+..|+++.|.+..+.|.|+..+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 36899999999999999999999999999987 3478999999999999999999999999988988888742110
Q ss_pred ----C----------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 135 ----S----------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 135 ----~----------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
. ........|+|.|+...+.+.+|.+.|..+|++.+... ..+++||+|.+.++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 0 01122348899999999999999999999999965544 678999999999999999999999
Q ss_pred CeeCCeEEEEEeccC
Q 004289 201 RYIAGKQIKLEPSHL 215 (763)
Q Consensus 201 ~~I~Gr~LkVe~a~~ 215 (763)
.++.++.|.+...-.
T Consensus 156 ~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 156 KKLNGRRISVEKNSR 170 (216)
T ss_pred hhhcCceeeecccCc
Confidence 999999999954443
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.46 E-value=2.4e-13 Score=131.95 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=74.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
...+++|||+|||++++|++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+++.|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345779999999999999999999999999999874 578899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004289 128 SIPKDN 133 (763)
Q Consensus 128 a~pk~~ 133 (763)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876654
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.45 E-value=5.4e-13 Score=144.03 Aligned_cols=164 Identities=24% Similarity=0.362 Sum_probs=136.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhhhcccCC--CcccccccCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSIP 130 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGf-AFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~a~p 130 (763)
.+--.++|+++-.-|+-+.|..+|++||.|..|.+-.|..|| |+|+|.|.+.|+.|..+|+|+.|.. +.|+|.|++-
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 344578899999999999999999999999999977777776 9999999999999999999988763 6677766531
Q ss_pred CCC----------------CCcc-----------------------------------------ccc--cceeEEeccCC
Q 004289 131 KDN----------------PSEK-----------------------------------------EIN--QGTLVVFNLDS 151 (763)
Q Consensus 131 k~~----------------~~~~-----------------------------------------~~~--~~tLfVgNLp~ 151 (763)
..- .+.. ... ...|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 100 0000 000 24677888876
Q ss_pred -CCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 152 -SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 152 -svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.+|.|.|..+|+.||+|.+|++...++..|+|++.|...|+-|++.|+|..++||+|+|.+++...
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 599999999999999999999987788999999999999999999999999999999999998654
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.44 E-value=4.6e-13 Score=130.03 Aligned_cols=77 Identities=22% Similarity=0.433 Sum_probs=71.3
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..+|||+||+.++++++|+++|++||+|++|++ +++.++||||+|.+.++|++|++.||+.+|.|++|+|+++++
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 458999999999999999999999999999876 456789999999999999999999999999999999999886
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
+.
T Consensus 114 ~~ 115 (144)
T PLN03134 114 RP 115 (144)
T ss_pred CC
Confidence 43
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=148.66 Aligned_cols=161 Identities=22% Similarity=0.409 Sum_probs=133.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCccc-EEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC-
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCG-FVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI- 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskG-fAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~- 129 (763)
.++..+.++|+|||..+..++|...|..||+|..+.+. ..| -++|.|.+..+|++|++.|....+...++++.|+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 45566899999999999999999999999999999663 344 49999999999999999999999888888776641
Q ss_pred ------CCCC-------------C------------Cccc-------------cccc-eeEEeccCCCCCHHHHHHHhcc
Q 004289 130 ------PKDN-------------P------------SEKE-------------INQG-TLVVFNLDSSVSNDELHHIFGV 164 (763)
Q Consensus 130 ------pk~~-------------~------------~~~~-------------~~~~-tLfVgNLp~svTeedLrelFs~ 164 (763)
|+.. . .+.+ ...- +|||.||+++++.++|...|..
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 1100 0 0000 0122 4999999999999999999999
Q ss_pred cCceeEeeecCCc--------ccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 165 YGEIKEIRETPQK--------IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 165 fGeVkeIrit~~s--------kG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
+|.|+.|.|..+. .|||||+|.+.++|.+|++.|+|..|.|+.|.|+++.
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999998762222 3899999999999999999999999999999999998
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.39 E-value=2.7e-12 Score=138.73 Aligned_cols=160 Identities=22% Similarity=0.265 Sum_probs=136.3
Q ss_pred CcEEEecCCCCC-CCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC-
Q 004289 56 SRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN- 133 (763)
Q Consensus 56 sRtLfVgNLP~~-vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~- 133 (763)
+..|.|.||..+ ||.+.|..+|.-||+|..|++-.+.+--|+|+|.|...|+.|+..|+|..|.||+|+|.+++...-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 478889999655 999999999999999999998666668999999999999999999999999999999988754321
Q ss_pred -----CCccc-------------------------cccceeEEeccCCCCCHHHHHHHhcccCce-eEeeecCCcccEEE
Q 004289 134 -----PSEKE-------------------------INQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETPQKIHQKY 182 (763)
Q Consensus 134 -----~~~~~-------------------------~~~~tLfVgNLp~svTeedLrelFs~fGeV-keIrit~~skG~aF 182 (763)
..+.+ +++.+|+..|+|.+++||+|+..|..-|-. +..+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 11100 124599999999999999999999977755 55677777888999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCC-eEEEEEeccC
Q 004289 183 IEFYDTRAAEAALRELNSRYIAG-KQIKLEPSHL 215 (763)
Q Consensus 183 VeF~d~esA~kAL~~LnG~~I~G-r~LkVe~a~~ 215 (763)
+++.++|+|..|+-.++...+++ ..|||+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999988886 5999999875
No 46
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.39 E-value=6.4e-12 Score=133.76 Aligned_cols=160 Identities=14% Similarity=0.225 Sum_probs=130.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEE--------EE----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~s--------v~----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
....|||.|||.++|.+|+.++|++||-|.. |+ -.|+.+|=|++.|...++.+.|++.|++..|+|++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3457999999999999999999999997753 22 26889999999999999999999999999999999
Q ss_pred ccccccCCC---------CC-------------------------CCccccccceeEEeccCC----CCC-------HHH
Q 004289 123 LDIHYSIPK---------DN-------------------------PSEKEINQGTLVVFNLDS----SVS-------NDE 157 (763)
Q Consensus 123 L~V~~a~pk---------~~-------------------------~~~~~~~~~tLfVgNLp~----svT-------eed 157 (763)
|+|+.|+-. .. ...+.....||.+.|+=. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999665311 00 011112345899998732 223 467
Q ss_pred HHHHhcccCceeEeee-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 158 LHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 158 LrelFs~fGeVkeIri-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
|++-+++||.|..|.+ ..++.|.+-|.|.+.++|..||+.|+|+.|.||+|..+...
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 7788999999999877 56788999999999999999999999999999999876643
No 47
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=7.4e-13 Score=148.09 Aligned_cols=165 Identities=24% Similarity=0.337 Sum_probs=138.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC--
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP-- 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p-- 130 (763)
..+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|+++|++|+++|++.++.|+.+.......
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 677899999999999999999999999999999999999999999999999999999999999999988877422211
Q ss_pred ----------------CCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHH
Q 004289 131 ----------------KDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAA 194 (763)
Q Consensus 131 ----------------k~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kA 194 (763)
-........++..+|+- |++..+..-++.+|..+|.++. +.++..+..-|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 11112222334566555 9999999999999999999999 88888888999999999999777
Q ss_pred HHHhCCCeeCCeEEEEEeccCchhHH
Q 004289 195 LRELNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 195 L~~LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
+..+ |+.+.++...+.++.+.+...
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~g~~n 254 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPGGVWN 254 (549)
T ss_pred ccCC-ceecCCCCceEEecCCCcccC
Confidence 7645 788889999999999876543
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.35 E-value=1.9e-12 Score=149.90 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=98.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhc--CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskf--G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
..++|||+||+.+++|++|+++|++| |+|..|++ .++||||+|.+.++|++|+++|++..|.|+.|+|.|+.|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 35799999999999999999999999 99999875 46899999999999999999999999999999999998865
Q ss_pred CCCc------------------------cccccceeEEeccCCCCCHHHHHHHhcccCcee
Q 004289 133 NPSE------------------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIK 169 (763)
Q Consensus 133 ~~~~------------------------~~~~~~tLfVgNLp~svTeedLrelFs~fGeVk 169 (763)
.... -.....+++++|++++.+++.+.++|..+|.|.
T Consensus 309 ~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 309 KKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred cccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 4300 011356999999999999999999999998754
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.33 E-value=3.5e-12 Score=105.96 Aligned_cols=66 Identities=20% Similarity=0.446 Sum_probs=61.8
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 59 LLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 59 LfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
|||+|||+++++++|+++|++||.|..+++ .++.+|+|||+|.+.++|++|++.|+++.+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998884 466899999999999999999999999999998875
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.33 E-value=6.3e-12 Score=104.42 Aligned_cols=66 Identities=35% Similarity=0.580 Sum_probs=61.5
Q ss_pred eEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 144 LVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 144 LfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
|||+|||.++++++|+++|+.||.|..+.+ .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988876 345688999999999999999999999999999986
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2.6e-12 Score=125.91 Aligned_cols=77 Identities=31% Similarity=0.447 Sum_probs=72.8
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
..+|||+||+..+++.||..+|.+||.|..|.+...+.|||||||+|+.+|+.|+..|+|..|+|..|+|++++-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 45899999999999999999999999999999988899999999999999999999999999999999999987654
No 52
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=1.9e-11 Score=123.69 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=101.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC-
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI- 129 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~- 129 (763)
.++|||+|||.++++++|+++|.+||.|..+.+ +++++|||||+|.+.++|..|++.+++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999977763 68999999999999999999999999999999999999953
Q ss_pred ---CCCCCCc----------------cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee
Q 004289 130 ---PKDNPSE----------------KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 173 (763)
Q Consensus 130 ---pk~~~~~----------------~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri 173 (763)
++..... .......+++.+++..++..++...|..+|.+..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 2222210 0112459999999999999999999999999977665
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.1e-12 Score=124.53 Aligned_cols=76 Identities=22% Similarity=0.418 Sum_probs=72.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.++||||||+.++++.||..+|.+||+|.+|+++....|||||+|+|+.||+.|+..|+|+.|.|..++|+.+.-+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999887543
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.26 E-value=1.2e-11 Score=136.10 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=71.7
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||+++|+++|+++|+.||+|++|++ ++++++||||+|.++++|++||+.||+.+|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34569999999999999999999999999999876 4566799999999999999999999999999999999998
Q ss_pred cCc
Q 004289 214 HLR 216 (763)
Q Consensus 214 ~~k 216 (763)
++.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 764
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.23 E-value=1.6e-10 Score=123.92 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=135.0
Q ss_pred CCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHH--hhhcccCCCcccc
Q 004289 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKS--LQNKLTRSGKLDI 125 (763)
Q Consensus 48 ~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~--Lng~~l~Gr~L~V 125 (763)
..+....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|++.|++|+.. -+...+.|+.--+
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 34555667889999999999999999999999999998876 45667999999999999999853 2334467888778
Q ss_pred cccCCCCCCCcccc---cccee--EEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 126 HYSIPKDNPSEKEI---NQGTL--VVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 126 ~~a~pk~~~~~~~~---~~~tL--fVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
.|+..++.....+. ....| -|-|--+.+|.|.|.+++...|+|.+|.+..+.--.|.|||++.+.|++|..+|||
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccc
Confidence 88755443222221 12233 34455668999999999999999999988766555899999999999999999999
Q ss_pred CeeCC--eEEEEEeccCch
Q 004289 201 RYIAG--KQIKLEPSHLRG 217 (763)
Q Consensus 201 ~~I~G--r~LkVe~a~~k~ 217 (763)
.+|+. +.|+|+|++|..
T Consensus 182 ADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 182 ADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ccccccceeEEEEecCcce
Confidence 99874 899999999875
No 56
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=1.3e-10 Score=128.83 Aligned_cols=162 Identities=14% Similarity=0.230 Sum_probs=126.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE---eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY---RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~---~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
..-|-+++||+++|++||+++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 45677899999999999999999887 44444 578999999999999999999996 57777888888884443332
Q ss_pred CC-------CccccccceeEEeccCCCCCHHHHHHHhcccCceeE-eee----cCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 133 NP-------SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 133 ~~-------~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVke-Iri----t~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
.. .....+...|-+.+||+.+|++||.++|+..--|.. |.+ -.++.+-|||+|.+.+.|++||. -|.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHH
Confidence 21 111134568999999999999999999997654444 323 33456799999999999999997 466
Q ss_pred CeeCCeEEEEEeccCchhHH
Q 004289 201 RYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 201 ~~I~Gr~LkVe~a~~k~~rr 220 (763)
..|.-+-|+|-.+...+.++
T Consensus 167 e~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HhhccceEEeehhHHHHHHh
Confidence 77888999998887666554
No 57
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.5e-11 Score=113.62 Aligned_cols=76 Identities=20% Similarity=0.422 Sum_probs=70.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
-+.+.||||+||+..++|++|.+||+++|+|+.|.+ +....|||||+|+..++|+.|++.+++..|..++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 356889999999999999999999999999999974 667889999999999999999999999999999999987
Q ss_pred c
Q 004289 128 S 128 (763)
Q Consensus 128 a 128 (763)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2e-10 Score=122.78 Aligned_cols=159 Identities=16% Similarity=0.347 Sum_probs=126.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
-.+|||..+.++.+|+||+..|+.||+|..|+ +...+|||+||+|.+..+-..|+..||-..++|..|+|.-+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 45999999999999999999999999999998 3678999999999999999999999999999998888832110
Q ss_pred CCC-----------------------------------------------------------------------------
Q 004289 131 KDN----------------------------------------------------------------------------- 133 (763)
Q Consensus 131 k~~----------------------------------------------------------------------------- 133 (763)
..+
T Consensus 290 PP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vt 369 (544)
T KOG0124|consen 290 PPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVT 369 (544)
T ss_pred CCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCC
Confidence 000
Q ss_pred ----------------------------------CCcc-----------------------------------cccccee
Q 004289 134 ----------------------------------PSEK-----------------------------------EINQGTL 144 (763)
Q Consensus 134 ----------------------------------~~~~-----------------------------------~~~~~tL 144 (763)
+.++ ...++.+
T Consensus 370 P~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~Vi 449 (544)
T KOG0124|consen 370 PARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVI 449 (544)
T ss_pred CCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEE
Confidence 0000 0013577
Q ss_pred EEecc--CCCCC---HHHHHHHhcccCceeEeeecCCccc---------EEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 004289 145 VVFNL--DSSVS---NDELHHIFGVYGEIKEIRETPQKIH---------QKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210 (763)
Q Consensus 145 fVgNL--p~svT---eedLrelFs~fGeVkeIrit~~skG---------~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkV 210 (763)
+++|+ |.+++ +.+|++.|++||.|.+|-+...+.+ .-||+|....++.+|+.+|+|+.|+|+++..
T Consensus 450 vLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvA 529 (544)
T KOG0124|consen 450 VLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVA 529 (544)
T ss_pred EEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeeh
Confidence 77886 33443 4689999999999999877444332 4799999999999999999999999999987
Q ss_pred Eecc
Q 004289 211 EPSH 214 (763)
Q Consensus 211 e~a~ 214 (763)
+...
T Consensus 530 E~YD 533 (544)
T KOG0124|consen 530 EVYD 533 (544)
T ss_pred hhhh
Confidence 7654
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.9e-10 Score=104.34 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=76.1
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchh
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
.+.|||.|||..+|.|+..++|.+||.|..|++ +...+|.|||-|+|+.+|.+|++.|+|..+.++.|.|-|.++...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 458999999999999999999999999999998 667799999999999999999999999999999999999998876
Q ss_pred HHHH
Q 004289 219 RKCL 222 (763)
Q Consensus 219 rr~~ 222 (763)
.+.+
T Consensus 98 ~~~~ 101 (124)
T KOG0114|consen 98 FKLM 101 (124)
T ss_pred HHHH
Confidence 6544
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=6.8e-11 Score=125.27 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=73.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
..++|+|.|||....|-||+..|++||+|.+|.+ ..-+|||+||+|++.+||++|-.+|+|.++.||+|.|..+.++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 3479999999999999999999999999998884 5668999999999999999999999999999999999998776
Q ss_pred CCCC
Q 004289 132 DNPS 135 (763)
Q Consensus 132 ~~~~ 135 (763)
-...
T Consensus 175 V~n~ 178 (376)
T KOG0125|consen 175 VHNK 178 (376)
T ss_pred hccC
Confidence 4433
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=131.31 Aligned_cols=163 Identities=16% Similarity=0.312 Sum_probs=126.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
....+||++||..+++++++++.+.||+++... .++.++||||.+|.|.--...|+..|+|+.+.+++|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 345899999999999999999999999998765 257899999999999999999999999999999999998875
Q ss_pred CCCCCCccc--------------------cccceeEEeccC--CCC-CH-------HHHHHHhcccCceeEeeecCC---
Q 004289 130 PKDNPSEKE--------------------INQGTLVVFNLD--SSV-SN-------DELHHIFGVYGEIKEIRETPQ--- 176 (763)
Q Consensus 130 pk~~~~~~~--------------------~~~~tLfVgNLp--~sv-Te-------edLrelFs~fGeVkeIrit~~--- 176 (763)
+........ .....|.+-|+= .++ .+ |+++.-|.+||.|+.|.+...
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 433211000 111223333320 011 11 456677789999999987322
Q ss_pred -----cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 177 -----KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 177 -----skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
..|..||||.+.+++++|+.+|+|..+.++.|...|.....
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 24689999999999999999999999999999999987543
No 62
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=105.75 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=73.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
+.-.|.|||+|||.++|.+++.++|.+||.|+.|++ +...+|.|||.|+|+.+|++|++.|.|..+.++.|.|.|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345789999999999999999999999999999995 667899999999999999999999999999999999999876
Q ss_pred CC
Q 004289 131 KD 132 (763)
Q Consensus 131 k~ 132 (763)
.+
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 44
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.5e-10 Score=121.52 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=68.2
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecC--CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP--QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~--~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.++|||+||++.+++++|+++|+.||+|++|++.. ..++||||+|.+.++|+.||. |+|..|.|++|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 45899999999999999999999999999998833 357899999999999999995 9999999999999997643
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=2.6e-10 Score=95.80 Aligned_cols=66 Identities=26% Similarity=0.505 Sum_probs=58.8
Q ss_pred eEEeccCCCCCHHHHHHHhcccCceeEeeecC----CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 144 LVVFNLDSSVSNDELHHIFGVYGEIKEIRETP----QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 144 LfVgNLp~svTeedLrelFs~fGeVkeIrit~----~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
|||+|||+++++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999988733 3478999999999999999999999999999985
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=2e-10 Score=120.54 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=68.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.++|||+|||+.++|++|+++|+.||+|..|++ ....+|||||+|.+.++|+.|+ .|+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999986 2336899999999999999999 59999999999999887543
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=2.8e-10 Score=92.97 Aligned_cols=69 Identities=28% Similarity=0.523 Sum_probs=63.1
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCC---cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ---KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~---skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
+|+|+|||..+++++|+++|+.||.|.++++... .+++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999877433 36899999999999999999999999999999874
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.4e-10 Score=123.06 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=72.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
...++|+|.|||+..-+-||+.+|++||+|.+|.| ...+|||+||+|++.++|++|-++|||..|.||+|+|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 34569999999999999999999999999999887 456799999999999999999999999999999999999886
Q ss_pred c
Q 004289 216 R 216 (763)
Q Consensus 216 k 216 (763)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.11 E-value=1.9e-10 Score=96.73 Aligned_cols=66 Identities=18% Similarity=0.391 Sum_probs=58.4
Q ss_pred EEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 59 LLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 59 LfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
|||+|||+++++++|+++|+.||.|..+++ .+..+|+|||+|.+.++|++|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999998885 244689999999999999999999998999998874
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.5e-10 Score=117.11 Aligned_cols=77 Identities=18% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
.+.+|-|.||+.+++|++|++||.+||.|..|++ ++.+||||||+|.+.++|.+|++.|+|.-+..-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4678999999999999999999999999999983 89999999999999999999999999999999999999999
Q ss_pred CC
Q 004289 130 PK 131 (763)
Q Consensus 130 pk 131 (763)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.2e-10 Score=107.45 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=72.4
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
.+.||||+||...++||+|.++|+++|+|+.|-+ +..+.|||||+|+..++|+.|++-++|..+..++|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4679999999999999999999999999999765 55667999999999999999999999999999999999976
Q ss_pred CchhHH
Q 004289 215 LRGLRK 220 (763)
Q Consensus 215 ~k~~rr 220 (763)
--.+-+
T Consensus 115 GF~eGR 120 (153)
T KOG0121|consen 115 GFVEGR 120 (153)
T ss_pred cchhhh
Confidence 554443
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=4.9e-10 Score=91.49 Aligned_cols=68 Identities=21% Similarity=0.432 Sum_probs=62.1
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRA---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~t---gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
+|||+|||.++++++|+++|++||+|..+.+. +.++|+|||+|.+.++|++|++.+++..+.|+++.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999998753 345799999999999999999999999999988876
No 72
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=6.6e-10 Score=90.09 Aligned_cols=56 Identities=29% Similarity=0.525 Sum_probs=51.6
Q ss_pred HHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 158 LHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 158 LrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
|+++|++||+|+.|.+....++++||+|.+.++|.+|++.|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999986666799999999999999999999999999999999986
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=3.2e-10 Score=115.96 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.+..-.+||||+|++.+..++|++.|++||+|.+..+ ++++|||+||+|.|.++|++|++.- +-.|+||+..|+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccc
Confidence 4555679999999999999999999999999998763 8999999999999999999999743 345788887776
Q ss_pred cc
Q 004289 127 YS 128 (763)
Q Consensus 127 ~a 128 (763)
.+
T Consensus 87 lA 88 (247)
T KOG0149|consen 87 LA 88 (247)
T ss_pred hh
Confidence 65
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.06 E-value=2e-10 Score=126.48 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=84.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-CCCcccEEEEEeCCH--HHHHHHHHHhhhcccCCCcccccccCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDI--RAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-tgkskGfAFV~F~d~--e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
....+||||||++++++++|+.+|..||.|..|.+ ..+.||||||+|.+. .++++||..|+|..|.|+.|+|.-++|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34579999999999999999999999999999984 223399999999987 789999999999999999999987765
Q ss_pred CCC-------CCccccccceeEEeccCCC-CCHHHHHHHhcccCceeEeee
Q 004289 131 KDN-------PSEKEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRE 173 (763)
Q Consensus 131 k~~-------~~~~~~~~~tLfVgNLp~s-vTeedLrelFs~fGeVkeIri 173 (763)
.=. .........++- |+.. .....|+=+|-+.++|+.+-+
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEecccccccccccc
Confidence 311 000000001111 1111 333456667778888876655
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=7e-10 Score=122.25 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=70.8
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeec-CCcccEEEEEEcCH--HHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDT--RAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-~~skG~aFVeF~d~--esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.-+||||||.+.++++||+.+|..||.|++|.+. ...||||||+|.+. .++.+||..|||.++.|+.|+|..|++.-
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~Y 89 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHY 89 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHH
Confidence 3599999999999999999999999999997762 11289999999987 78999999999999999999999999876
Q ss_pred hHH
Q 004289 218 LRK 220 (763)
Q Consensus 218 ~rr 220 (763)
.-|
T Consensus 90 LeR 92 (759)
T PLN03213 90 LAR 92 (759)
T ss_pred HHH
Confidence 444
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.02 E-value=2.8e-10 Score=114.21 Aligned_cols=76 Identities=26% Similarity=0.450 Sum_probs=70.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
-.+|.|.||.+-++.++|+.+|++||.|-+|.| +...+|||||.|.+..+|+.|+++|+|..+.|+.|+|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999877 778899999999999999999999999999999999988864
Q ss_pred c
Q 004289 216 R 216 (763)
Q Consensus 216 k 216 (763)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=3.4e-10 Score=111.85 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=70.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit--~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.+.++|||+|||.++-+.||.++|.+||.|.+|.+. +....||||||+|.++|+.||..-+|..+.|++|+|++++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 346799999999999999999999999999998873 333569999999999999999999999999999999998865
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 3
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=7.2e-10 Score=116.45 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=75.3
Q ss_pred CCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 48 ~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
+......|-+||||+-|+.+++|..|+..|++||+|+.|. ++++++|||||+|.+..+...|.+..+|+.|.|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 3334557889999999999999999999999999999887 59999999999999999999999999999999999
Q ss_pred ccccccCC
Q 004289 123 LDIHYSIP 130 (763)
Q Consensus 123 L~V~~a~p 130 (763)
|-|.+..-
T Consensus 173 i~VDvERg 180 (335)
T KOG0113|consen 173 ILVDVERG 180 (335)
T ss_pred EEEEeccc
Confidence 99987643
No 79
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8.1e-10 Score=113.41 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=72.4
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...+|-|.||+.++++++|+++|.+||.|..|.+ ++..||||||.|.+.++|++||+.|||.-...-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 3458999999999999999999999999988765 88899999999999999999999999999999999999999
Q ss_pred Cc
Q 004289 215 LR 216 (763)
Q Consensus 215 ~k 216 (763)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=6e-10 Score=111.84 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=72.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
+..--.+|-|-||-.-++.++|+.+|++||.|-.|++ +..++|||||.|.+..+|+.|+++|+|.+|.|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3444568999999999999999999999999999985 88899999999999999999999999999999999998
Q ss_pred ccCC
Q 004289 127 YSIP 130 (763)
Q Consensus 127 ~a~p 130 (763)
++.-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8753
No 81
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.7e-09 Score=113.72 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=79.3
Q ss_pred CCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 004289 129 IPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 203 (763)
Q Consensus 129 ~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I 203 (763)
.|..++.....+-.||||+-|+++++|++|+..|+.||.|+.|++ ++.++|||||+|.+..+..+|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 454444444455679999999999999999999999999999875 888999999999999999999999999999
Q ss_pred CCeEEEEEeccCchhH
Q 004289 204 AGKQIKLEPSHLRGLR 219 (763)
Q Consensus 204 ~Gr~LkVe~a~~k~~r 219 (763)
.|+.|.|.+-+....+
T Consensus 169 dgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 169 DGRRILVDVERGRTVK 184 (335)
T ss_pred cCcEEEEEeccccccc
Confidence 9999999997765543
No 82
>smart00360 RRM RNA recognition motif.
Probab=98.97 E-value=1.6e-09 Score=87.91 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=59.6
Q ss_pred EeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 146 VFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 146 VgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
|+|||..+++++|+++|+.||.|.++.+. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999998763 3346899999999999999999999999999999874
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=3.1e-09 Score=87.20 Aligned_cols=70 Identities=30% Similarity=0.546 Sum_probs=64.1
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCC----cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ----KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~----skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
+|+|+|||..+++++|+++|+.||.|..+.+... .++++||+|.+.++|..|++.+++..+.|++++|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999877443 378999999999999999999999999999999874
No 84
>smart00360 RRM RNA recognition motif.
Probab=98.96 E-value=2.1e-09 Score=87.29 Aligned_cols=65 Identities=20% Similarity=0.442 Sum_probs=59.5
Q ss_pred ecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 61 LRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 61 VgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|++|++.+++..+.|++|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999998874 3556899999999999999999999999999998876
No 85
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=9e-09 Score=115.03 Aligned_cols=160 Identities=18% Similarity=0.285 Sum_probs=112.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-------eCCCccc---EEEEEeCCHHHHHHHHHHhhhc-------
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-------RASKHCG---FVTISYYDIRAARNAMKSLQNK------- 116 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-------~tgkskG---fAFV~F~d~e~AekAl~~Lng~------- 116 (763)
.-++.||||+||++++|++|...|..||.+..=. -....+| |+|+.|+++.+.+.-+.+....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 4578999999999999999999999999876432 1233566 9999999999988776653320
Q ss_pred ----ccCCCcccccccCCCC-----CCCccccccceeEEeccCCCCCHHHHHHHhc-ccCceeEeee-----cCCcccEE
Q 004289 117 ----LTRSGKLDIHYSIPKD-----NPSEKEINQGTLVVFNLDSSVSNDELHHIFG-VYGEIKEIRE-----TPQKIHQK 181 (763)
Q Consensus 117 ----~l~Gr~L~V~~a~pk~-----~~~~~~~~~~tLfVgNLp~svTeedLrelFs-~fGeVkeIri-----t~~skG~a 181 (763)
.+..+.+.|..-...+ +....-...+|||||+||.-++-++|..||+ .||.|..+-| .+.++|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 0112222221111111 1112223467999999999999999999999 8999998766 34458899
Q ss_pred EEEEcCHHHHHHHHHH----hCCCeeCCeEEEEEecc
Q 004289 182 YIEFYDTRAAEAALRE----LNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 182 FVeF~d~esA~kAL~~----LnG~~I~Gr~LkVe~a~ 214 (763)
=|.|.+.++-.+||.+ |+..+| .|+|+|++.-
T Consensus 417 RVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkPYv 452 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKPYV 452 (520)
T ss_pred eeeecccHHHHHHHhhheEEEecccc-ceeeeeccee
Confidence 9999999999999974 222222 2566666554
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.9e-10 Score=113.21 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=75.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
...||||||+|..+|+|..|...|=.||+|..|.+ +.++||||||+|...|+|..||..|++.+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999984 7899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004289 129 IPKDN 133 (763)
Q Consensus 129 ~pk~~ 133 (763)
+|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98654
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.92 E-value=3.4e-09 Score=109.89 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=66.4
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeec--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit--~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
.+|||+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|.++++|+.|+ .|+|..|.+++|.|.....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 489999999999999999999999999999873 344679999999999999999 5999999999999988664
No 88
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.92 E-value=1.9e-08 Score=110.04 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.+|+|.|||.++|++.|++-|..||.|+++.+....+..+.|.|.++++|++|+..|+|..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 489999999999999999999999999997773333444599999999999999999999999999999873
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=4e-09 Score=86.49 Aligned_cols=70 Identities=23% Similarity=0.481 Sum_probs=63.3
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCC----CcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRAS----KHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tg----kskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
+|+|++||..+++++|+++|+.||+|..+.+.. +.+|+|||+|.+.++|+.|++.+++..+.++++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999988532 3489999999999999999999999999999988754
No 90
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.8e-09 Score=108.15 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=68.0
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
|..-.+||||+|++.+..|+|++.|++||+|++..+ ++++|||+||+|.|.++|.+|++..| -.|.||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 344568999999999999999999999999999543 78899999999999999999997544 458999999888
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
+.-..
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 87644
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=4.6e-09 Score=106.33 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=70.2
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..+|||+||+.++++++|+++|..||.|..|++ ++..+|+|||+|.+.++|..|++.+++..|.|++|+|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 579999999999999999999999999988765 567789999999999999999999999999999999999775
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.90 E-value=3.3e-08 Score=106.45 Aligned_cols=166 Identities=22% Similarity=0.248 Sum_probs=132.2
Q ss_pred CCCCCCcEEEecCCCCC-CCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 51 NDEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~-vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
.+..+...++|-+|... ++.+-|..+|..||.|..|+....-.|.|+|++.|..+.++|+..||+..+.|.+|.|.+++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 34456678999999865 88899999999999999999767778999999999999999999999999999999886653
Q ss_pred CC------------------------CC---------CCccccccceeEEeccCCCCCHHHHHHHhcccCce-eEeeecC
Q 004289 130 PK------------------------DN---------PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETP 175 (763)
Q Consensus 130 pk------------------------~~---------~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeV-keIrit~ 175 (763)
.. .+ +..-..++.+|+..|.|..+|||.|.++|..-+.. ..|++.+
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 21 11 00111236799999999999999999999865543 3455532
Q ss_pred C---cccEEEEEEcCHHHHHHHHHHhCCCeeCC------eEEEEEeccCc
Q 004289 176 Q---KIHQKYIEFYDTRAAEAALRELNSRYIAG------KQIKLEPSHLR 216 (763)
Q Consensus 176 ~---skG~aFVeF~d~esA~kAL~~LnG~~I~G------r~LkVe~a~~k 216 (763)
. +..-+.+||++.++|..||..+|...|.+ ..|++.|+.++
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 2 23479999999999999999999988876 57888887764
No 93
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.90 E-value=2.6e-09 Score=86.62 Aligned_cols=56 Identities=23% Similarity=0.492 Sum_probs=50.7
Q ss_pred HHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 73 LKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 73 L~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999975555799999999999999999999999999999999885
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.90 E-value=3.4e-09 Score=109.85 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=65.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
..+|||+||++.+||++|+++|+.||+|..|++ .++.++||||+|.++++|+.|+ .|+|..|.+++|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 479999999999999999999999999999985 4566789999999999999999 69999999999998553
No 95
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9e-10 Score=111.31 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=74.2
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
..+||||++|..+|++.-|...|-.||+|++|.+ +.+.|+|+||+|...|+|.+||..||+.++.||.|+|-+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3569999999999999999999999999999886 56779999999999999999999999999999999999999
Q ss_pred CchhH
Q 004289 215 LRGLR 219 (763)
Q Consensus 215 ~k~~r 219 (763)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 97644
No 96
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=1.1e-08 Score=112.45 Aligned_cols=75 Identities=27% Similarity=0.342 Sum_probs=68.9
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEeccC
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHL 215 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~-Gr~LkVe~a~~ 215 (763)
..||||.||.++.|+||.-+|++-|+|-++|+ .+.+||||||.|.+.++|++|++.||..+|. ||.|.|..+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 38999999999999999999999999999886 6788999999999999999999999999985 89999988764
Q ss_pred c
Q 004289 216 R 216 (763)
Q Consensus 216 k 216 (763)
.
T Consensus 164 n 164 (506)
T KOG0117|consen 164 N 164 (506)
T ss_pred c
Confidence 3
No 97
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.83 E-value=5.6e-09 Score=120.64 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=72.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 133 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~ 133 (763)
+||||||.|+.+++|.||+.+|+.||+|.+|.+ ...+|||||.+...++|++|+.+|.+..+.++.|+|.|+..+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 679999999999999999999999999999987 67899999999999999999999999999999999999976654
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.82 E-value=7.9e-09 Score=116.23 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=74.3
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
..+||||+|+++++++|..+|+..|.|..+++ ++..+||+||+|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999876 7888999999999999999999999999999999999999877
Q ss_pred hhHH
Q 004289 217 GLRK 220 (763)
Q Consensus 217 ~~rr 220 (763)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6554
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=1.1e-08 Score=116.00 Aligned_cols=164 Identities=16% Similarity=0.271 Sum_probs=133.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhc-----------C-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQY-----------G-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR 119 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskf-----------G-~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~ 119 (763)
.....+.+||+++|..++++++..+|..- | .|..+++ +..+.|||++|.+.++|..|+ .+++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhh-cccchhhC
Confidence 34456799999999999999999998743 2 4777776 778899999999999999999 57888888
Q ss_pred CCcccccccCCCC-------------------CCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cC
Q 004289 120 SGKLDIHYSIPKD-------------------NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TP 175 (763)
Q Consensus 120 Gr~L~V~~a~pk~-------------------~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~ 175 (763)
|..+++.-..... ...........++|++||..+++++++++...||.++..++ ++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 8887763211100 00111122459999999999999999999999999987543 56
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 176 QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 176 ~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.+++|+|.||.+......|+..|||..+++++|.|..+....
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 789999999999999999999999999999999999988764
No 100
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=6.6e-09 Score=98.35 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=70.3
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.|||.++....++++|.+.|..||+|+.|.+ ++-.|||++|||.+.++|++|+.+|||.++.|..|.|.|+-.++
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 8999999999999999999999999999886 66678999999999999999999999999999999999986554
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=6.1e-09 Score=121.99 Aligned_cols=160 Identities=21% Similarity=0.321 Sum_probs=139.7
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA----SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~t----gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.+...++|||+|||+..+++.+|+..|..+|.|.+|.+. +...-||||.|.+...+-.|+.++.+..|..-.+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 345568899999999999999999999999999998852 2334589999999999999999999999887788887
Q ss_pred ccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-
Q 004289 127 YSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG- 205 (763)
Q Consensus 127 ~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~G- 205 (763)
+..++. .....++|++|..++....|.+.|..||.|..|.+ .+..-|++|.|.+...|+.|++.|.|..|++
T Consensus 447 lG~~ks------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 447 LGQPKS------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred cccccc------ccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCC
Confidence 776532 34568999999999999999999999999999886 4456699999999999999999999999997
Q ss_pred -eEEEEEeccCch
Q 004289 206 -KQIKLEPSHLRG 217 (763)
Q Consensus 206 -r~LkVe~a~~k~ 217 (763)
++++|.|+.+..
T Consensus 520 ~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 520 PRRLRVDLASPPG 532 (975)
T ss_pred CcccccccccCCC
Confidence 889999998776
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.78 E-value=7.6e-09 Score=116.36 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=71.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
+.|||||||++++|++|..+|+..|.|.+++ .+++.+||||++|.+.++|++|++.|+|.++.|++|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999988 48999999999999999999999999999999999999997543
Q ss_pred C
Q 004289 132 D 132 (763)
Q Consensus 132 ~ 132 (763)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=6.9e-10 Score=109.54 Aligned_cols=75 Identities=17% Similarity=0.333 Sum_probs=69.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
-..+.=|||||||.+.||.||...|++||+|..|. -|++++||||+.|+|.++...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34567899999999999999999999999999887 3899999999999999999999999999999999999954
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.75 E-value=1.3e-08 Score=103.90 Aligned_cols=75 Identities=33% Similarity=0.537 Sum_probs=71.2
Q ss_pred eeEEeccCCCCCHHHHHH----HhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 143 TLVVFNLDSSVSNDELHH----IFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 143 tLfVgNLp~svTeedLre----lFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
||||.||...+..++|++ +|++||+|.+|.. +++.+|.|||.|.+++.|..|+++|+|+.+.||+++|.||+.+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999998 9999999999876 7778999999999999999999999999999999999999876
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 91 s 91 (221)
T KOG4206|consen 91 S 91 (221)
T ss_pred c
Confidence 5
No 105
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=2.3e-09 Score=105.91 Aligned_cols=74 Identities=22% Similarity=0.375 Sum_probs=69.1
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.+.-|||||||+.+|+.||.-+|++||+|..|.+ |+.++||||..|.|.++..-|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3558999999999999999999999999999765 8899999999999999999999999999999999999754
No 106
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.5e-08 Score=103.41 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=82.6
Q ss_pred CCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHH
Q 004289 120 SGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAAL 195 (763)
Q Consensus 120 Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL 195 (763)
.|+|.|+.+..... ....++||||-|...-+|||++.+|..||+|.+|.+ .+.+||++||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesr----g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESR----GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccC----CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 46777765543222 224568999999999999999999999999999876 5677999999999999999999
Q ss_pred HHhCCCe-eCC--eEEEEEeccCchhHH--HHhhcC
Q 004289 196 RELNSRY-IAG--KQIKLEPSHLRGLRK--CLANQL 226 (763)
Q Consensus 196 ~~LnG~~-I~G--r~LkVe~a~~k~~rr--~~~qq~ 226 (763)
+.|||.. +-| ..|.|+|+..+.||. +| ||+
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRM-QQm 112 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRM-QQM 112 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHH-HHH
Confidence 9999954 444 789999999888775 45 444
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=2e-08 Score=95.15 Aligned_cols=74 Identities=12% Similarity=0.376 Sum_probs=69.7
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.|||.++...++|++|.+.|..||+|+.+.. ++-.||||+|+|++.+.|++|+.++||..|.+.+|.|.|+.-+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 8999999999999999999999999999873 7889999999999999999999999999999999999997543
No 108
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=1.7e-08 Score=105.96 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=68.5
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
+|||+|||..+++.+|+.+|++||+|.+|.|. |+|+||..+|...|+.||+.|||..|.|..|.|+-++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 69999999999999999999999999999984 6799999999999999999999999999999999998773
No 109
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.68 E-value=2.2e-08 Score=99.18 Aligned_cols=74 Identities=27% Similarity=0.354 Sum_probs=68.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
..||||+||+..++++-|.++|-+.|.|..+++ +...+|||||||.++|+|+=|++.||...++||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 349999999999999999999999999999886 45568999999999999999999999999999999999877
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=98.66 E-value=6e-08 Score=82.56 Aligned_cols=57 Identities=30% Similarity=0.564 Sum_probs=50.4
Q ss_pred HHHHHHHhc----ccCceeEee-e-----c--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 155 NDELHHIFG----VYGEIKEIR-E-----T--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 155 eedLrelFs----~fGeVkeIr-i-----t--~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
+++|+++|+ +||.|..|. + + +.++|++||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999874 2 2 6679999999999999999999999999999999863
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=2.8e-07 Score=99.74 Aligned_cols=162 Identities=11% Similarity=0.174 Sum_probs=118.0
Q ss_pred EEEecCCCCCCCHHHHHHHHhh-----cC--CeEEEE-eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 58 TLLLRKINSNIEDSELKALFEQ-----YG--DVRTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFsk-----fG--~I~sv~-~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
.|-+++||.++++.++.++|.. -| .|.-|+ ..++..|-|||.|..+++|+.|+.. +...++.|-|.+-.+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 6778899999999999999962 12 233333 3788999999999999999999964 4444544444331110
Q ss_pred -----------------C-----C-----CCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeE---eee----cC
Q 004289 130 -----------------P-----K-----DNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE---IRE----TP 175 (763)
Q Consensus 130 -----------------p-----k-----~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVke---Iri----t~ 175 (763)
+ - ..........++|-+++||+..+.|||.++|..|-.-.. |.+ .+
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qG 321 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQG 321 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCC
Confidence 0 0 000111122569999999999999999999998765322 333 46
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhHH
Q 004289 176 QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 176 ~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
+..|-|||+|.+.|+|.+|....+.+....|.|+|-.+.-.+..+
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 667899999999999999999888888889999998877665443
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=6.9e-08 Score=103.57 Aligned_cols=85 Identities=20% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh-cccCCCcccc
Q 004289 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKLDI 125 (763)
Q Consensus 47 G~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng-~~l~Gr~L~V 125 (763)
-..|..+...++|||++|-..++|.+|++.|.+||+|+++.+ -..+++|||+|.+.++|++|..++-+ ..|.|++|.|
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 356667778899999999999999999999999999999987 45677999999999999999876544 5578999999
Q ss_pred cccCCCC
Q 004289 126 HYSIPKD 132 (763)
Q Consensus 126 ~~a~pk~ 132 (763)
.|..++.
T Consensus 298 ~Wg~~~~ 304 (377)
T KOG0153|consen 298 KWGRPKQ 304 (377)
T ss_pred EeCCCcc
Confidence 9998843
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=1.5e-08 Score=102.78 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=113.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
...|||||+|+-..|+|+-|.++|-+-|+|..|.+ ..+.| ||||.|.++-+...|+..++|..+.++.+.|++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~-- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL-- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc--
Confidence 34699999999999999999999999999999985 34455 999999999999999999999999888888744
Q ss_pred CCCCCCccccccceeEEec----cCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 004289 130 PKDNPSEKEINQGTLVVFN----LDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSR 201 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgN----Lp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~ 201 (763)
+.|+ |+..++++.+.+.|+.-|.+..+++ .++.+.++|+.+....+.-.|+....+.
T Consensus 84 ---------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 84 ---------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ---------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 3344 6778999999999999999988876 3446779999998888888888766665
Q ss_pred eeCCeEE
Q 004289 202 YIAGKQI 208 (763)
Q Consensus 202 ~I~Gr~L 208 (763)
+..-+++
T Consensus 149 ~~~~~~~ 155 (267)
T KOG4454|consen 149 ELFQKKV 155 (267)
T ss_pred CcCCCCc
Confidence 5444433
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.57 E-value=1.2e-07 Score=80.81 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=50.8
Q ss_pred CHHHHHHHHh----hcCCeEEEE---e---C--CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 69 EDSELKALFE----QYGDVRTFY---R---A--SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 69 tEeeL~~lFs----kfG~I~sv~---~---t--gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
.+++|+++|+ +||.|..+. + + ++++|||||+|.+.++|++|++.|+|..+.|+.|++
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3688999998 999999884 2 2 778999999999999999999999999999999876
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=2.7e-07 Score=99.13 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=69.8
Q ss_pred ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHH-hCCCeeCCeEEEEEecc
Q 004289 136 EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE-LNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 136 ~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~-LnG~~I~Gr~LkVe~a~ 214 (763)
..|....+|||++|-..+++.+|++.|.+||+|+.|++..+ +++|||+|.+.++|++|..+ +|...|.|++|+|.|++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 33455679999999999999999999999999999998554 56999999999999998766 47678999999999999
Q ss_pred C
Q 004289 215 L 215 (763)
Q Consensus 215 ~ 215 (763)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.48 E-value=2e-07 Score=108.11 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=74.2
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhHH
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
++|||||.|+..+++.||..+|+.||+|.+|.+.. .++||||.....++|.+|+.+|+...+.++.|+|.|+..++.|.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 67999999999999999999999999999998744 68999999999999999999999999999999999999988665
No 117
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.38 E-value=3.7e-07 Score=98.27 Aligned_cols=164 Identities=21% Similarity=0.249 Sum_probs=129.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
....++|++++...+.+.++..++..+|.+.... -...++|++.|.|...+.+..|+.....+.+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3467999999999999999999999999666554 35678999999999999999999765555666655544333
Q ss_pred CCCCC-----CCccc-cccceeE-EeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHH
Q 004289 129 IPKDN-----PSEKE-INQGTLV-VFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 196 (763)
Q Consensus 129 ~pk~~-----~~~~~-~~~~tLf-VgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~ 196 (763)
..... ..... ....+++ |++|+.++++++|+..|..+|+|..+++ ++..+++++|+|.....+.+|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 22221 11111 1233566 9999999999999999999999999887 56668899999999999999998
Q ss_pred HhCCCeeCCeEEEEEeccCchh
Q 004289 197 ELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 197 ~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
. ....+.++++.+++..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 78889999999999887753
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.37 E-value=2.4e-07 Score=95.99 Aligned_cols=160 Identities=18% Similarity=0.243 Sum_probs=120.9
Q ss_pred EEEecCCCCCCCHHH-H--HHHHhhcCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 58 TLLLRKINSNIEDSE-L--KALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 58 tLfVgNLP~~vtEee-L--~~lFskfG~I~sv~----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
.++++++-..+..+- | ...|+.|-.+...+ ..++-++++|+.|.+...-.++-..-+++.+...++++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 667777777777665 3 56777766655544 3677889999999988887777766677777777666644333
Q ss_pred CCCCCc--cccccceeEEeccCCCCCHHHHHHHhcccCceeE---eee--cCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 004289 131 KDNPSE--KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE---IRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYI 203 (763)
Q Consensus 131 k~~~~~--~~~~~~tLfVgNLp~svTeedLrelFs~fGeVke---Iri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I 203 (763)
-+++.. -+.+.-+||.+.|.-+++++.|-+.|.+|-.-.. |+. +++++||+||.|.+..++.+|+++|+|+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 233222 2234559999999999999999999998865322 333 888999999999999999999999999999
Q ss_pred CCeEEEEEeccCch
Q 004289 204 AGKQIKLEPSHLRG 217 (763)
Q Consensus 204 ~Gr~LkVe~a~~k~ 217 (763)
+.++|++.-+.-++
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999987665443
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=86.22 Aligned_cols=82 Identities=18% Similarity=0.307 Sum_probs=72.1
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhc-CCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQY-GDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskf-G~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
.........-+||..+|.-+.+.++..+|.+| |.|+.++. ||.++|||||+|++.+.|+-|-+.||++.|.++.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 33344456689999999999999999999998 77777763 8999999999999999999999999999999999
Q ss_pred ccccccCC
Q 004289 123 LDIHYSIP 130 (763)
Q Consensus 123 L~V~~a~p 130 (763)
|.|++-.|
T Consensus 122 L~c~vmpp 129 (214)
T KOG4208|consen 122 LECHVMPP 129 (214)
T ss_pred eeeEEeCc
Confidence 99999644
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=2.3e-07 Score=108.82 Aligned_cols=138 Identities=9% Similarity=0.155 Sum_probs=118.5
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
++||.||++.+.+.+|...|..+|.+..+. ..++.+|+|||.|.+.++|.+|+.......+.
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------- 735 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------- 735 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-------------
Confidence 899999999999999999999999877665 36889999999999999999999754443332
Q ss_pred CCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 004289 133 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 208 (763)
Q Consensus 133 ~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~L 208 (763)
.-.++|.|+|+..|.++|+.+|..+|.++.+++ .+.++|.++|.|.+..+|.+++..+++..+..+.+
T Consensus 736 --------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~ 807 (881)
T KOG0128|consen 736 --------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNG 807 (881)
T ss_pred --------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCc
Confidence 225899999999999999999999999999765 56678999999999999999998888887877777
Q ss_pred EEEeccCc
Q 004289 209 KLEPSHLR 216 (763)
Q Consensus 209 kVe~a~~k 216 (763)
.|..+.|.
T Consensus 808 ~v~vsnp~ 815 (881)
T KOG0128|consen 808 EVQVSNPE 815 (881)
T ss_pred cccccCCc
Confidence 77776653
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-06 Score=94.19 Aligned_cols=78 Identities=17% Similarity=0.378 Sum_probs=72.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..|...|||..|.+-+++++|.-+|+.||.|.+|.+ ++.+..||||+|.+.+++++|.-.|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 357789999999999999999999999999999974 788999999999999999999999999999999999998
Q ss_pred cCC
Q 004289 128 SIP 130 (763)
Q Consensus 128 a~p 130 (763)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 754
No 122
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=2.3e-06 Score=98.57 Aligned_cols=85 Identities=13% Similarity=0.265 Sum_probs=76.4
Q ss_pred ccCCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHhhhc
Q 004289 45 VAGEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNK 116 (763)
Q Consensus 45 ~~G~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--------tgkskGfAFV~F~d~e~AekAl~~Lng~ 116 (763)
..|....++...++|||+||++.++++.|...|..||+|.++++ ..+.+-|+||.|.+..+|++|++.|+|+
T Consensus 163 ~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 163 RPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI 242 (877)
T ss_pred CCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce
Confidence 34666777788899999999999999999999999999999984 3446779999999999999999999999
Q ss_pred ccCCCcccccccC
Q 004289 117 LTRSGKLDIHYSI 129 (763)
Q Consensus 117 ~l~Gr~L~V~~a~ 129 (763)
.+.+..+++.|++
T Consensus 243 iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 243 IVMEYEMKLGWGK 255 (877)
T ss_pred eeeeeeeeecccc
Confidence 9999999999974
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.14 E-value=4.3e-06 Score=94.15 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=67.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..-.|+|||.+|...+...+|+.||++||+|.-.++ +.-.++|+||++.+.++|.+||..|+.+.|+|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345689999999999999999999999999987763 334578999999999999999999999999999999966
Q ss_pred c
Q 004289 128 S 128 (763)
Q Consensus 128 a 128 (763)
+
T Consensus 482 a 482 (940)
T KOG4661|consen 482 A 482 (940)
T ss_pred c
Confidence 4
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.11 E-value=2.9e-06 Score=85.41 Aligned_cols=91 Identities=19% Similarity=0.353 Sum_probs=60.2
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEec--c--cccccceeEEEEEecCCccchHHHHHHhcCccccCCC
Q 004289 590 DNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLP--I--DFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFN 665 (763)
Q Consensus 590 d~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Ylp--i--Df~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 665 (763)
..++.|.||+||+.+|.+.+++.|+......++|-|.+ . .--..+-...|||||.+.+++..|.+.|+|+.|...+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46889999999999999999998887666665554444 2 2223445789999999999999999999999998765
Q ss_pred Cc-cEEEEEeeecccH
Q 004289 666 SE-KVASLAYARIQGK 680 (763)
Q Consensus 666 s~-K~~~v~yA~iQG~ 680 (763)
.. -++.|.||-.|-.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 44 6799999998754
No 125
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=2.2e-06 Score=88.32 Aligned_cols=71 Identities=21% Similarity=0.403 Sum_probs=66.3
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.+||++||+.+.+.+|.++|..||+|.+|.+ +.+|+||+|.|..+|..|+..||+.+|.+.++.|++++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899999999999999999999999999887 5679999999999999999999999999988999998854
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.09 E-value=2.8e-06 Score=92.24 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=86.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||+.||.++++++|++.|++||.|..+. .+.+.+||+||+|.+.+++++++. ..-+.|.++++.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 466999999999999999999999999887665 378899999999999999999984 56788999999999999
Q ss_pred CCCCCCccccccc-eeEEeccCCCCCHHHHHHHhcccCcee
Q 004289 130 PKDNPSEKEINQG-TLVVFNLDSSVSNDELHHIFGVYGEIK 169 (763)
Q Consensus 130 pk~~~~~~~~~~~-tLfVgNLp~svTeedLrelFs~fGeVk 169 (763)
||+.......... .....|+....+.-.|...|.-|+.+.
T Consensus 175 pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred chhhccccccccccccccccccccccccccchhccccCccc
Confidence 9887543322211 222224554445555666666666553
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=6.8e-07 Score=97.74 Aligned_cols=150 Identities=15% Similarity=0.295 Sum_probs=122.8
Q ss_pred EEEecCCCCCCCHHHHHHHHhhc--CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhc-ccCCCcccccccCCCCCC
Q 004289 58 TLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK-LTRSGKLDIHYSIPKDNP 134 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskf--G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~-~l~Gr~L~V~~a~pk~~~ 134 (763)
.||++||.+.++-++|..+|... +--..+.+ -.||+||.+.|..-|.+|++.++++ .+.|+++.+.++.+|...
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~---k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV---KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee---ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 68999999999999999999743 21112212 4589999999999999999999986 489999999998887543
Q ss_pred CccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCc--ccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 135 SEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK--IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 135 ~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~s--kG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.+.+-|.|+|+..-++.|..+...||.|..|..+... .-..-|+|...+.+..||..|+|..+....++|.|
T Consensus 80 ------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 ------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred ------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 3459999999999999999999999999887653222 22445788999999999999999999999999998
Q ss_pred ccCc
Q 004289 213 SHLR 216 (763)
Q Consensus 213 a~~k 216 (763)
--..
T Consensus 154 iPde 157 (584)
T KOG2193|consen 154 IPDE 157 (584)
T ss_pred Cchh
Confidence 6543
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.5e-06 Score=89.22 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=71.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
++.+.|||--|.+-++++||.-||+.||.|+.|.+ ++.+-.||||||.+.+++++|.=.|+...|..++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34679999999999999999999999999999876 5555569999999999999999999999999999999998
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+.-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8654
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.04 E-value=1.7e-05 Score=81.22 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=66.4
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeE--eeecCCcc----cEEEEEEcCHHHHHHHHHHhCCCeeC---CeEEEEE
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE--IRETPQKI----HQKYIEFYDTRAAEAALRELNSRYIA---GKQIKLE 211 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVke--Irit~~sk----G~aFVeF~d~esA~kAL~~LnG~~I~---Gr~LkVe 211 (763)
.+||||.+||.++...||..+|..|---+. ++.+.+.+ -++||.|.+.++|.+|+++|||..|. +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 679999999999999999999998765554 44444443 58999999999999999999999886 6899999
Q ss_pred eccCchhH
Q 004289 212 PSHLRGLR 219 (763)
Q Consensus 212 ~a~~k~~r 219 (763)
+++....+
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 99876543
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=81.39 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=71.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhccc-CceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVY-GEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~f-GeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
...+.++|..+|.-+-+.++...|.+| |.|+.+++ |+.+||||||||.+.+.|.-|-+.||+..+.++.|+|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 346689999999999999999999988 77888776 889999999999999999999999999999999999999
Q ss_pred ccCc
Q 004289 213 SHLR 216 (763)
Q Consensus 213 a~~k 216 (763)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8887
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.94 E-value=1.2e-05 Score=93.04 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=71.0
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee--------cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--------TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri--------t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
++....|||+||++.++++.|...|..||.|..|++ ....+.++||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 455679999999999999999999999999999886 233467999999999999999999999999999999
Q ss_pred EEeccCc
Q 004289 210 LEPSHLR 216 (763)
Q Consensus 210 Ve~a~~k 216 (763)
+.|++.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999753
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.88 E-value=1.9e-05 Score=89.15 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=67.4
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
+.|+|.+|...+--.||+.||++||+|+-.++ ++..+.|+||++.+.++|.++|+.|+..++.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 49999999999999999999999999988665 444567999999999999999999999999999999998765
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.87 E-value=3.1e-05 Score=81.39 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=67.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
.-+.+|+|.|||+.|++++|++||+.||.+..+-+ .+.+.|.|-|.|...++|++|++.+++..+.|+.+.+....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 33468999999999999999999999998877764 78899999999999999999999999999999998886643
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.85 E-value=4e-05 Score=80.57 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=70.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|+|.|||+.|+++||+++|..||+++.+-+ .+.+.|.|-|.|...++|++|++.+++..+.|++|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 44568999999999999999999999998887655 56667899999999999999999999999999999998877
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 654
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.76 E-value=2.2e-05 Score=81.71 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=65.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
-+||.|.|..+++++.|...|.+|-.....+ -+++++||+||.|.++.++.+||++|+|+.++.++|.++-+..+
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 4999999999999999999999987543332 47999999999999999999999999999999999988655443
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.74 E-value=5.1e-05 Score=87.61 Aligned_cols=169 Identities=12% Similarity=0.015 Sum_probs=121.1
Q ss_pred CCCCCCCCCcEEEecCCCCCCCHHHHHHHHhh-cC---CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQ-YG---DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 48 ~~p~~e~psRtLfVgNLP~~vtEeeL~~lFsk-fG---~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
..+.-.....-+-+...+.+.++.+++++|.- +- .|....+.....|-++|.|....++++|++ -+...+..|.+
T Consensus 303 stpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~ 381 (944)
T KOG4307|consen 303 STPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPF 381 (944)
T ss_pred CCCcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcce
Confidence 33333334455667799999999999999972 22 333333556668999999999999999986 35555666666
Q ss_pred cccccCC------------CC-----------CC----------C--ccccccceeEEeccCCCCCHHHHHHHhcccCce
Q 004289 124 DIHYSIP------------KD-----------NP----------S--EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEI 168 (763)
Q Consensus 124 ~V~~a~p------------k~-----------~~----------~--~~~~~~~tLfVgNLp~svTeedLrelFs~fGeV 168 (763)
.|...-. +. .. . .......+|||..||..+++.++.++|..--.|
T Consensus 382 q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~V 461 (944)
T KOG4307|consen 382 QTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAV 461 (944)
T ss_pred eecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhh
Confidence 5522100 00 00 0 001123599999999999999999999977677
Q ss_pred eE-eee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 169 KE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 169 ke-Iri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
++ |.+ +...++.|||+|..++++.+|+..-+.++++.+.|+|.....+.
T Consensus 462 ed~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 462 EDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred hheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 66 666 34446799999999999999998778888999999998776654
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.74 E-value=2.9e-05 Score=87.39 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=61.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..+|||+|||.++++++|+++|++||+|+...+ .++..+||||+|++.++++.|+.+ +-..+.+++|.|+--.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 346999999999999999999999999998763 244448999999999999999976 4677889999985543
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.73 E-value=4.5e-05 Score=85.94 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=63.6
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee---c--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---T--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri---t--~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.+|||.|||.+++.++|+++|..||.|++.+| . .....||||+|.+..++..||++ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 37999999999999999999999999999655 2 22236999999999999999985 477899999999976654
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00017 Score=65.96 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=59.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhc--CCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccC----CCcccc
Q 004289 57 RTLLLRKINSNIEDSELKALFEQY--GDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTR----SGKLDI 125 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskf--G~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~----Gr~L~V 125 (763)
+||+|+|||...+.++|.+++... |...-++ .+..+.|||||.|.+.++|.+..+.++|+.|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988753 4444444 26778999999999999999999999999886 345566
Q ss_pred cccC
Q 004289 126 HYSI 129 (763)
Q Consensus 126 ~~a~ 129 (763)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.61 E-value=7.2e-05 Score=78.45 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=69.7
Q ss_pred cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 137 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 137 ~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
+......+||+|+++.++.+++...|+.||.|..+.+ .++.|+|+||+|.+.+.++.|+. |+|..|.|+.++|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3455669999999999999999999999999975544 56689999999999999999998 99999999999999
Q ss_pred eccCc
Q 004289 212 PSHLR 216 (763)
Q Consensus 212 ~a~~k 216 (763)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87744
No 141
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.61 E-value=0.00061 Score=76.76 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=105.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEE-E----EeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc---
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRT-F----YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH--- 126 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~s-v----~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~--- 126 (763)
+.-.|-+++||+.|+++||.++|+-.-.|.. + .-.++..|=|||+|++.+.|++|+.. +...|.-|-|.|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 4568999999999999999999996543333 2 12566888999999999999999964 3333433333220
Q ss_pred --------------------------------ccCCCCC---------------------------------------CC
Q 004289 127 --------------------------------YSIPKDN---------------------------------------PS 135 (763)
Q Consensus 127 --------------------------------~a~pk~~---------------------------------------~~ 135 (763)
+.+.+.. ..
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 0000000 00
Q ss_pred cc--c------------ccc-ceeEEeccCCCCCHHHHHHHhcccCce---eEeeecCCcccEEEEEEcCHHHHHHHHHH
Q 004289 136 EK--E------------INQ-GTLVVFNLDSSVSNDELHHIFGVYGEI---KEIRETPQKIHQKYIEFYDTRAAEAALRE 197 (763)
Q Consensus 136 ~~--~------------~~~-~tLfVgNLp~svTeedLrelFs~fGeV---keIrit~~skG~aFVeF~d~esA~kAL~~ 197 (763)
.. . ... ..++...||+..++.++..+|+..-.+ .+|..+++..+-++|+|.+.++|..||.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams- 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG- 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-
Confidence 00 0 001 367778999999999999999864443 2233367778899999999999999985
Q ss_pred hCCCeeCCeEEEEEe
Q 004289 198 LNSRYIAGKQIKLEP 212 (763)
Q Consensus 198 LnG~~I~Gr~LkVe~ 212 (763)
-++..+..+-|++-.
T Consensus 340 kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 340 KDGANMGHRYVELFL 354 (510)
T ss_pred cCCcccCcceeeecc
Confidence 466666666655443
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.61 E-value=0.00011 Score=79.38 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=66.2
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeE--------eee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVke--------Iri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
..|||.|||.++|.+++.++|+++|-|.. |++ .+..||=|+|.|.-.++..-|++.|++..+.|+.|+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 36999999999999999999999999876 444 456688899999999999999999999999999999
Q ss_pred EEeccC
Q 004289 210 LEPSHL 215 (763)
Q Consensus 210 Ve~a~~ 215 (763)
|+.|+-
T Consensus 215 VerAkf 220 (382)
T KOG1548|consen 215 VERAKF 220 (382)
T ss_pred Eehhhh
Confidence 987753
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.56 E-value=0.00028 Score=62.59 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=48.9
Q ss_pred cEEEecCCCCCCCHHHHH----HHHhhcC-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 57 RTLLLRKINSNIEDSELK----ALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~----~lFskfG-~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..|||.|||.+.+-..|+ .|++-+| .|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 368999999999988766 5666776 77776 34899999999999999999999999999999999973
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.52 E-value=4.8e-05 Score=83.08 Aligned_cols=147 Identities=17% Similarity=0.160 Sum_probs=108.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc-
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRA--------SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY- 127 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~t--------gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~- 127 (763)
+.|-|.||.+.++.++++.||.-.|+|..+.+. ......|||.|.|...+..|- .|.+..+-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 379999999999999999999999999988741 224568999999999998887 4666666655554421
Q ss_pred cC------------------C----CC------CCC--ccc---------------------cccceeEEeccCCCCCHH
Q 004289 128 SI------------------P----KD------NPS--EKE---------------------INQGTLVVFNLDSSVSND 156 (763)
Q Consensus 128 a~------------------p----k~------~~~--~~~---------------------~~~~tLfVgNLp~svTee 156 (763)
.. | .+ .+. +.. .-..|++|++|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 10 0 00 000 000 002589999999999999
Q ss_pred HHHHHhcccCceeEeee-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 157 ELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 157 dLrelFs~fGeVkeIri-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
++-+.|..||+|.+.++ .+...-+|-|+|...-....|++ ++|+++.-
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 99999999999998776 33345588899998888888886 66776653
No 145
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00097 Score=73.00 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhh-----cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQ-----YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFsk-----fG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
....|-.++||+..++.+|..+|+- -|.+......++..|.|.|.|.|.|.-+.|++ .+...+.++.+.|--+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 3445667899999999999999983 33444444567888999999999999999996 46667777887773322
Q ss_pred CCCC------------CCccccccceeEEeccCCCCCHHHHHHHhcccCc-------eeEeee-cCCcccEEEEEEcCHH
Q 004289 130 PKDN------------PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGE-------IKEIRE-TPQKIHQKYIEFYDTR 189 (763)
Q Consensus 130 pk~~------------~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGe-------VkeIri-t~~skG~aFVeF~d~e 189 (763)
+.+- ......++-.|-.++||+++++.|+.++|..--. |.-|+. .++..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 2111 0111123447788999999999999999973222 223433 5666789999999999
Q ss_pred HHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 190 AAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 190 sA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
+|+.||. -|...|+-|.|++-.+...+
T Consensus 218 ~aq~aL~-khrq~iGqRYIElFRSTaaE 244 (508)
T KOG1365|consen 218 DAQFALR-KHRQNIGQRYIELFRSTAAE 244 (508)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHhHHH
Confidence 9999997 35556666666665554433
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.40 E-value=0.00036 Score=64.64 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=51.0
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC-----CeeCCeEEEEEeccCch
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS-----RYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG-----~~I~Gr~LkVe~a~~k~ 217 (763)
.|+|.+++..++.++|++.|+.||.|..|.+.. ....|+|.|.+.++|++|+..+.. ..|.+..+.++.-.-.+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGee 81 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEE 81 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHH
Confidence 578889999999999999999999999999844 345999999999999999987743 46788888888777666
Q ss_pred hHHHH
Q 004289 218 LRKCL 222 (763)
Q Consensus 218 ~rr~~ 222 (763)
++..+
T Consensus 82 E~~Yw 86 (105)
T PF08777_consen 82 EEEYW 86 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65533
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.34 E-value=0.0002 Score=75.22 Aligned_cols=78 Identities=12% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
..+...+.+||+|+...++.+++...|+.||.|..+. ..+.+|||+||+|.+.+.+++|++ |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3455678999999999999999999999999996443 356789999999999999999998 9999999999988
Q ss_pred cccC
Q 004289 126 HYSI 129 (763)
Q Consensus 126 ~~a~ 129 (763)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 6643
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.34 E-value=9.5e-05 Score=75.67 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=67.4
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCc---ccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK---IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~s---kG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
..+||||+|+...|+++-|.++|-+-|.|..|.|.... ..||||+|.++-...-|++.|||..+.+..++|.+-+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 35699999999999999999999999999998873222 229999999999999999999999999999999886654
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.96 E-value=0.0029 Score=56.23 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=48.0
Q ss_pred ceeEEeccCCCCCHHH----HHHHhcccC-ceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 142 GTLVVFNLDSSVSNDE----LHHIFGVYG-EIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 142 ~tLfVgNLp~svTeed----LrelFs~fG-eVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..|+|.|||.+.+... |++++.-+| +|.+|. .+.|+|.|.+.+.|.+|.+.|+|.++.|.+|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 3699999999887654 667777665 566662 57999999999999999999999999999999999843
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.83 E-value=0.0014 Score=72.87 Aligned_cols=73 Identities=30% Similarity=0.333 Sum_probs=58.7
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCC------------------cccEEEEEEcCHHHHHHHHHHhC
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQ------------------KIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~------------------skG~aFVeF~d~esA~kAL~~Ln 199 (763)
....+||++.|||.+-..+.|.+||+.+|.|+.|+|..- .+-+|+|||...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 356789999999999999999999999999999998322 13479999999999999998886
Q ss_pred CCeeCCeEEEE
Q 004289 200 SRYIAGKQIKL 210 (763)
Q Consensus 200 G~~I~Gr~LkV 210 (763)
...-+-.-|+|
T Consensus 308 ~e~~wr~glkv 318 (484)
T KOG1855|consen 308 PEQNWRMGLKV 318 (484)
T ss_pred hhhhhhhcchh
Confidence 54444333333
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.79 E-value=0.0016 Score=70.25 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=62.1
Q ss_pred CcEEEecCCCCCCCHHHHH------HHHhhcCCeEEEEeCCCc------cc--EEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 56 SRTLLLRKINSNIEDSELK------ALFEQYGDVRTFYRASKH------CG--FVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~------~lFskfG~I~sv~~tgks------kG--fAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
..-+||-+||+.+.++++. ++|.+||.|..|.+..+. .+ -+||+|.+.|+|.+|+.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 3468999999999888833 799999999999863332 12 259999999999999999999999999
Q ss_pred cccccccCC
Q 004289 122 KLDIHYSIP 130 (763)
Q Consensus 122 ~L~V~~a~p 130 (763)
-|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988643
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.68 E-value=0.0053 Score=66.39 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=66.9
Q ss_pred cccceeEEeccCCCCCHHH------HHHHhcccCceeEeeecCCc------ccE--EEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 139 INQGTLVVFNLDSSVSNDE------LHHIFGVYGEIKEIRETPQK------IHQ--KYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeed------LrelFs~fGeVkeIrit~~s------kG~--aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
...+-+||-+|++.+-.|+ -.++|.+||+|+.|.+..+. .++ .||+|.+.++|.+||.+.+|..+.
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3455789999999988777 24899999999998773322 122 399999999999999999999999
Q ss_pred CeEEEEEeccCchhHHHH
Q 004289 205 GKQIKLEPSHLRGLRKCL 222 (763)
Q Consensus 205 Gr~LkVe~a~~k~~rr~~ 222 (763)
||.|+..|...+-=...+
T Consensus 192 Gr~lkatYGTTKYCtsYL 209 (480)
T COG5175 192 GRVLKATYGTTKYCTSYL 209 (480)
T ss_pred CceEeeecCchHHHHHHH
Confidence 999999998866433344
No 153
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.00053 Score=81.37 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=112.8
Q ss_pred cEEEecCCCCCCCHH-HHHHHHhhcCCeEEEEeCC----Cccc-EEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 57 RTLLLRKINSNIEDS-ELKALFEQYGDVRTFYRAS----KHCG-FVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 57 RtLfVgNLP~~vtEe-eL~~lFskfG~I~sv~~tg----kskG-fAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
+...+.++.+...+. .+++.|+.+|.|+.|+... .+.+ +.++++....+++.|.. ..+.-+.++...|..+.+
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCc
Confidence 466788887777766 5678899999999998532 2233 88999999999999884 566778888888877766
Q ss_pred CCCCCccc------cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 131 KDNPSEKE------INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 131 k~~~~~~~------~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
+....... ....++||.||+..+.+.+|+..|..+|.+..+++ .++.+|+|+|+|...+.|.+|+....
T Consensus 651 ~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 651 EEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred hhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 54211111 11238999999999999999999999998877654 56778999999999999999998655
Q ss_pred CCeeC
Q 004289 200 SRYIA 204 (763)
Q Consensus 200 G~~I~ 204 (763)
+..++
T Consensus 731 ~~~~g 735 (881)
T KOG0128|consen 731 SCFFG 735 (881)
T ss_pred hhhhh
Confidence 55555
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.48 E-value=0.0066 Score=49.45 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=44.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHH
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAM 110 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl 110 (763)
++.|-|.+.+++..+..| ..|..||+|..+..+ ...-+.+|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVL-EHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHHH-HHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 367889999977775555 588899999999984 45679999999999999985
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.48 E-value=0.0037 Score=65.63 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhhcccCCCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeE----eeecCCccc
Q 004289 104 RAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE----IRETPQKIH 179 (763)
Q Consensus 104 e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVke----Irit~~skG 179 (763)
.-|+.|..+|++....++.|+|.|+.. ..|+|.||...++.|.|.+-|+.||.|.. +....+..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 357788889999999999999999843 36999999999999999999999999865 233455566
Q ss_pred EEEEEEcCHHHHHHHHHHhCC
Q 004289 180 QKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 180 ~aFVeF~d~esA~kAL~~LnG 200 (763)
-++|+|...-.|.+|++.+..
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cchhhhhcchhHHHHHHHhcc
Confidence 899999999999999998743
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.45 E-value=0.0024 Score=69.76 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=68.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeE--------ee-----ecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IR-----ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVke--------Ir-----it~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
..+|||-+|+..+++++|.++|.++|.|+. |+ +|...|+-|.|.|.|...|..|+.-++++.+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 459999999999999999999999999865 22 26777899999999999999999999999999999
Q ss_pred EEEEeccCch
Q 004289 208 IKLEPSHLRG 217 (763)
Q Consensus 208 LkVe~a~~k~ 217 (763)
|+|.++..+.
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999887554
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.45 E-value=0.008 Score=55.77 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=39.8
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhc
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK 116 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~ 116 (763)
.|.|.+++..++-++|++.|++||+|..|.. .+..-.|+|.|.+.++|++|+..+...
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 5788899999999999999999999999986 334458999999999999999987765
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.27 E-value=0.004 Score=69.28 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCC-------------------cccEEEEEeCCHHHHHH
Q 004289 48 EHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASK-------------------HCGFVTISYYDIRAARN 108 (763)
Q Consensus 48 ~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgk-------------------skGfAFV~F~d~e~Aek 108 (763)
+.+..+-++|||.+-|||.+-.-+-|.++|..+|.|..|++ |+ .+-+|+|+|...+.|.+
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRI-ckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRI-CKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeee-cCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 34445678999999999999999999999999999999985 22 25679999999999999
Q ss_pred HHHHhhhcc
Q 004289 109 AMKSLQNKL 117 (763)
Q Consensus 109 Al~~Lng~~ 117 (763)
|.+.|+..-
T Consensus 302 A~e~~~~e~ 310 (484)
T KOG1855|consen 302 ARELLNPEQ 310 (484)
T ss_pred HHHhhchhh
Confidence 998775433
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.24 E-value=0.0078 Score=65.38 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=59.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcC--CeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYG--DVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG--~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
-.+|||||-+++||+||.+.+...| .+.+++ ..+.+||||+|...+..+.++.|+.|-.++|+|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3899999999999999999888766 444443 58999999999999999999999999999999876555
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.11 E-value=0.011 Score=48.11 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=42.8
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHH
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAAL 195 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL 195 (763)
+.|-|.+.+.+..++.|+ .|..||+|..+.++ ......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 468888888877655554 77789999999875 45779999999999999995
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.09 E-value=0.017 Score=53.26 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=53.1
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEee------------ecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR------------ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 208 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIr------------it~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~L 208 (763)
...|.|.+.|+. ....+.+.|++||+|.+.. -.+...++-.|+|.++.+|.+||+ .||..|.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 457899999988 5566778999999998875 123456799999999999999997 79999998654
Q ss_pred -EEEeccC
Q 004289 209 -KLEPSHL 215 (763)
Q Consensus 209 -kVe~a~~ 215 (763)
-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 4677643
No 162
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.05 E-value=0.0031 Score=69.64 Aligned_cols=75 Identities=19% Similarity=0.400 Sum_probs=62.6
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEE-ecccccccce-eEEEEEecCCccchHHHHHHhcCccccCCC
Q 004289 590 DNRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIY-LPIDFKNKCN-VGYAFINMTDPSQIVPFYQSFNGKKWEKFN 665 (763)
Q Consensus 590 d~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~Y-lpiDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 665 (763)
+....|.||++|+++|.+.|++.||- +...+.|-| .|-|+....+ .+.|||||..+.++..|.+.|.|+.+-.-+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 34567999999999999999999999 777888875 4567664444 777999999999999999999999886543
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.85 E-value=0.0056 Score=66.32 Aligned_cols=76 Identities=16% Similarity=0.313 Sum_probs=67.7
Q ss_pred CcEEE-ecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 56 SRTLL-LRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 56 sRtLf-VgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
+.++| |++|+.++++++|+..|..+|.|..+++ ++..+|||+|.|.+...+.+++.. +...+.++++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44555 9999999999999999999999999983 788999999999999999999987 8888999999998876
Q ss_pred CCC
Q 004289 130 PKD 132 (763)
Q Consensus 130 pk~ 132 (763)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 653
No 164
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.73 E-value=0.012 Score=65.35 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=62.5
Q ss_pred ceeEEeccCCCCCHHHHHHHhccc--CceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCC-eeCCeEEEEEeccCchh
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR-YIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~f--GeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~-~I~Gr~LkVe~a~~k~~ 218 (763)
..||++||.+.++.+||..+|... +--..+. -+.+|+||.+.|...|.+|++.++|+ ++.|++++|+++-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999743 1111122 24689999999999999999999995 79999999999998876
Q ss_pred HH
Q 004289 219 RK 220 (763)
Q Consensus 219 rr 220 (763)
|.
T Consensus 79 rs 80 (584)
T KOG2193|consen 79 RS 80 (584)
T ss_pred Hh
Confidence 54
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.62 E-value=0.013 Score=64.22 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-------------eCCCcccEEEEEeCCHHHHHHHHHHhhhcccC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-------------RASKHCGFVTISYYDIRAARNAMKSLQNKLTR 119 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-------------~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~ 119 (763)
....-+|||-.||..+++.+|.++|.++|.|..=+ .|.+.||-|.|+|.|..+|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33456999999999999999999999999886422 37889999999999999999999999999999
Q ss_pred CCcccccccCCC
Q 004289 120 SGKLDIHYSIPK 131 (763)
Q Consensus 120 Gr~L~V~~a~pk 131 (763)
+..|.|..+..+
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 998888776443
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.57 E-value=0.0066 Score=63.81 Aligned_cols=68 Identities=25% Similarity=0.450 Sum_probs=58.5
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCc-------------cc----EEEEEEcCHHHHHHHHHHhCCCe
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK-------------IH----QKYIEFYDTRAAEAALRELNSRY 202 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~s-------------kG----~aFVeF~d~esA~kAL~~LnG~~ 202 (763)
..+.||+++||+.+....|++||++||+|-.|.+.+.. +. -|.|||.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56899999999999999999999999999888763221 11 37899999999999999999999
Q ss_pred eCCeE
Q 004289 203 IAGKQ 207 (763)
Q Consensus 203 I~Gr~ 207 (763)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99853
No 167
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.54 E-value=0.024 Score=60.67 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=52.1
Q ss_pred HHHHHHHhcccCceeEeeec---CCc---ccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 155 NDELHHIFGVYGEIKEIRET---PQK---IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 155 eedLrelFs~fGeVkeIrit---~~s---kG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
++++++-+++||+|..|-+. ... .---||+|...++|.+|+-.|||.+|+|+.++..|.....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 57889999999999886651 111 2257999999999999999999999999999999877543
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.52 E-value=0.01 Score=62.36 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeC-------------CCccc----EEEEEeCCHHHHHHHHHHhhhcc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA-------------SKHCG----FVTISYYDIRAARNAMKSLQNKL 117 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~t-------------gkskG----fAFV~F~d~e~AekAl~~Lng~~ 117 (763)
..-.||+++||+.++-.-|+++|+.||+|-.|++. +.... -|.|+|.+-+.|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999841 12222 28899999999999999999999
Q ss_pred cCCCc
Q 004289 118 TRSGK 122 (763)
Q Consensus 118 l~Gr~ 122 (763)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 169
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.44 E-value=0.033 Score=65.27 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeE-eee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVke-Iri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
++.|-+.|+|++++-+||.++|..|-.+.. |.+ .+...|-|.|.|++.++|.+|...|+++.|..++|+|..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 458899999999999999999999976533 332 556678999999999999999999999999999998864
No 170
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.27 E-value=0.1 Score=49.01 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=66.5
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEE
Q 004289 591 NRTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVA 670 (763)
Q Consensus 591 ~rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~ 670 (763)
.+|+|-+=-+|+.++...++..+-+.+.....-+.+--|.. -|.-=+-|-|.+.++|..||+.|||++++.... .+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 35666666889999888777667777777777666666643 477778999999999999999999999988765 459
Q ss_pred EEEe-eecc
Q 004289 671 SLAY-ARIQ 678 (763)
Q Consensus 671 ~v~y-A~iQ 678 (763)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4454
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.23 E-value=0.0092 Score=62.80 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=53.3
Q ss_pred HHHHHHhc-ccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhHH
Q 004289 156 DELHHIFG-VYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 156 edLrelFs-~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
+||...|+ +||+|+++.+ -.+-+|-++|+|...++|++|+..||+..+.|++|..++.--..-+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 44555555 9999999765 34457889999999999999999999999999999999987665444
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.11 E-value=0.079 Score=51.94 Aligned_cols=76 Identities=29% Similarity=0.354 Sum_probs=53.9
Q ss_pred cccceeEEeccC-----CCCCH----HHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 139 INQGTLVVFNLD-----SSVSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 139 ~~~~tLfVgNLp-----~svTe----edLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
+...|+.|.=+. ...-. ++|.+.|..||+|.-||+.. +.-.|+|.+-+.|.+|+. |+|.+|+|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 345677777665 11222 36888899999999888854 478999999999999996 999999999999
Q ss_pred EEeccCchh
Q 004289 210 LEPSHLRGL 218 (763)
Q Consensus 210 Ve~a~~k~~ 218 (763)
|+...|.-.
T Consensus 101 i~LKtpdW~ 109 (146)
T PF08952_consen 101 IRLKTPDWL 109 (146)
T ss_dssp EEE------
T ss_pred EEeCCccHH
Confidence 999887643
No 173
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.09 E-value=0.041 Score=66.27 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCC--CcccccccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSI 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~a~ 129 (763)
...+++.+||++|.+++....|...|..||.|+.|.. .+..-||+|.|.+.+.|+.|++.|.+..|.+ +.++|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4567889999999999999999999999999999876 4556699999999999999999999999975 678888876
Q ss_pred CCC
Q 004289 130 PKD 132 (763)
Q Consensus 130 pk~ 132 (763)
+..
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 543
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.93 E-value=0.067 Score=61.95 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=67.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhc-ccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCee---CCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFG-VYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI---AGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs-~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I---~Gr~LkVe~a~ 214 (763)
..++.|+|.||-..+|.-+|+.++. ..|.|.+.+| .+-|.+|||.|.+.++|.+...+|||... +.|.|.+.|..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 4467999999999999999999999 5666776654 44578999999999999999999999654 46999999998
Q ss_pred CchhH
Q 004289 215 LRGLR 219 (763)
Q Consensus 215 ~k~~r 219 (763)
..+..
T Consensus 521 ~deld 525 (718)
T KOG2416|consen 521 ADELD 525 (718)
T ss_pred hhHHH
Confidence 77644
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.037 Score=63.68 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=55.0
Q ss_pred CcEEEecCCCCCCC--HH----HHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccC-CCccc
Q 004289 56 SRTLLLRKINSNIE--DS----ELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLD 124 (763)
Q Consensus 56 sRtLfVgNLP~~vt--Ee----eL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~-Gr~L~ 124 (763)
...|+|-|+|---. .+ -|..+|+++|+|..++. .+..+||.|++|.+.++|+.|++.|+|+.|. ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45889999984322 22 34478999999999884 5779999999999999999999999998876 34444
Q ss_pred c
Q 004289 125 I 125 (763)
Q Consensus 125 V 125 (763)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.53 E-value=0.11 Score=58.49 Aligned_cols=81 Identities=30% Similarity=0.381 Sum_probs=70.9
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCccchHHHHHHhcCccccCCCCccEEE
Q 004289 592 RTTLMIKNIPNKYTSKMLLAAIDERHKGTYDFIYLPIDFKNKCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEKVAS 671 (763)
Q Consensus 592 rTTvMirNIPnk~t~~~L~~~ide~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 671 (763)
-|+|-|=-+|+.+|..+|+..+...+.-=-|+-.++ | .--|.--+-|-|.+..+|..||+.|||+.++..-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 788999999999999999999998877777888887 3 455666789999999999999999999999887766 999
Q ss_pred EEeee
Q 004289 672 LAYAR 676 (763)
Q Consensus 672 v~yA~ 676 (763)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99965
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.40 E-value=0.088 Score=48.60 Aligned_cols=72 Identities=8% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE------------eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFY------------RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~------------~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
..+.|.|=+.|+. .-..|.+.|++||+|.+.. .......+..|+|.+..+|++||+ .||+.+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888889988 6677789999999999886 123456689999999999999995 6999998754
Q ss_pred c-ccccc
Q 004289 123 L-DIHYS 128 (763)
Q Consensus 123 L-~V~~a 128 (763)
+ -|.|.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3 45555
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.93 E-value=0.028 Score=59.27 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=47.3
Q ss_pred HHHHHHh-hcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 72 ELKALFE-QYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 72 eL~~lFs-kfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
+|...|+ +||+|+++++ .-.-.|-++|.|...++|++|+..|++..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 9999999864 2335788999999999999999999999999999998775
No 179
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.09 Score=60.63 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred cceeEEeccCCC--C----CHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEE
Q 004289 141 QGTLVVFNLDSS--V----SNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA-GKQIK 209 (763)
Q Consensus 141 ~~tLfVgNLp~s--v----TeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~-Gr~Lk 209 (763)
...|+|.|+|.- . -..-|.++|+++|+|..+.+ .+..+||.|+||.+.++|+.|++.|||..|. .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 347888888852 2 22446789999999987554 4557899999999999999999999998876 46666
Q ss_pred EEe
Q 004289 210 LEP 212 (763)
Q Consensus 210 Ve~ 212 (763)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 644
No 180
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.46 E-value=0.17 Score=58.03 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHh-hcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHH
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKS 112 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFs-kfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~ 112 (763)
.-.|.||||||+||.-++.+||..+|+ -||.|..+-+ -+-.+|-|=|+|.+..+-.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 446789999999999999999999999 7999987763 244789999999999999999975
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.34 E-value=0.27 Score=44.00 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=43.0
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhh
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 114 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Ln 114 (763)
..+|. +|..+...||.++|+.||.|.--.+ ....|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhc
Confidence 66676 9999999999999999999987777 44579999999999999998775
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.90 E-value=0.32 Score=47.53 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=57.6
Q ss_pred CCCCCCCcEEEecCCCCCC----CHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 50 LNDEHPSRTLLLRKINSNI----EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~v----tEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
...+.|-.||.|+=|..++ +...+...++.||+|.+|..-| +-.|.|.|.|..+|=+|+.+.+. ...|..+++
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3456677899997655553 4445556778999999987644 45899999999999999999876 566777777
Q ss_pred ccc
Q 004289 126 HYS 128 (763)
Q Consensus 126 ~~a 128 (763)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 664
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.74 E-value=0.24 Score=57.22 Aligned_cols=78 Identities=23% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCCCCCCCcEEEecCCCCCCCHHHHHHHHh--hcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh--cccCCCc
Q 004289 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFE--QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGK 122 (763)
Q Consensus 47 G~~p~~e~psRtLfVgNLP~~vtEeeL~~lFs--kfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng--~~l~Gr~ 122 (763)
|++-...+..+.|+++.||..+-+|+++.||+ .+.++.+|...-.. --||+|++..||+.|.+.|.. ++|.|++
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 44444445556889999999999999999998 58888888863333 468999999999999999887 5588888
Q ss_pred cccc
Q 004289 123 LDIH 126 (763)
Q Consensus 123 L~V~ 126 (763)
|..+
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 7653
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.67 E-value=0.2 Score=51.10 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=45.5
Q ss_pred CHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEEEeccCch
Q 004289 154 SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 154 TeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~Ln--G~~I~Gr~LkVe~a~~k~ 217 (763)
..+.|+++|..|+.+..+...+.- +-..|.|.+.++|.+|...|+ +..+.|+.++|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999998886654433 357789999999999999999 999999999999996554
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.59 E-value=0.087 Score=61.07 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=62.5
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHh-hcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccC---CCcccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFE-QYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLDI 125 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFs-kfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~---Gr~L~V 125 (763)
|....++..|+|.||=.-+|.-+|++|+. ..|.|.+.++ -+-|..|||.|.+.++|.....+|+|..|. .+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34456678999999999999999999999 5666666654 455668999999999999999999998775 455555
Q ss_pred ccc
Q 004289 126 HYS 128 (763)
Q Consensus 126 ~~a 128 (763)
.|.
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 553
No 186
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.56 E-value=0.15 Score=55.76 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=58.8
Q ss_pred eeEEeccCCCCCHHHHHHHhcccC--ceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fG--eVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
++|||||-+.+|++||.+....-| .+.++++ .+.+||||+|-..+..+..+.|+.|-.++|.|..-.|-...
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 899999999999999998887655 3444443 68889999999999999999999999999999655554443
No 187
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.18 E-value=0.45 Score=53.03 Aligned_cols=71 Identities=25% Similarity=0.524 Sum_probs=57.0
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCc--------ccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQK--------IHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~s--------kG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
+.|.|.||.++++.|+++.+|.-.|+|.++++.+.. ...|||.|.|...+..|-. |-.+.+-++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 479999999999999999999999999998875422 3489999999999998865 5555555555555444
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.13 E-value=0.94 Score=44.40 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=57.3
Q ss_pred cccccceeEEeccCCCCC-HHHHH---HHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 137 KEINQGTLVVFNLDSSVS-NDELH---HIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 137 ~~~~~~tLfVgNLp~svT-eedLr---elFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
+++.-.||+|.=|..++. .+||+ +.++.||.|.+|...+ +..|.|.|.|..+|-+|+.++.. ..-|..+++.|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 345567999987766643 34444 5567899999998754 56899999999999999999876 56777888877
Q ss_pred cc
Q 004289 213 SH 214 (763)
Q Consensus 213 a~ 214 (763)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 55
No 189
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=89.81 E-value=0.49 Score=46.50 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=51.8
Q ss_pred CCCCcEEEecCCC-----CCCCHH----HHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 53 EHPSRTLLLRKIN-----SNIEDS----ELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 53 e~psRtLfVgNLP-----~~vtEe----eL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
.+|.-||.|.=+. ...-++ +|.+.|..||+|.-++... +.-+|+|.+-++|-+|+ .++|..+.|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaal-s~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAAL-SLDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHH-HGCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHH-ccCCcEECCEEE
Confidence 3566788887555 123333 6668888999988877523 57899999999999999 589999999999
Q ss_pred cccccC
Q 004289 124 DIHYSI 129 (763)
Q Consensus 124 ~V~~a~ 129 (763)
+|+.-.
T Consensus 100 ~i~LKt 105 (146)
T PF08952_consen 100 KIRLKT 105 (146)
T ss_dssp EEEE--
T ss_pred EEEeCC
Confidence 996643
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.53 E-value=0.21 Score=54.64 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=60.6
Q ss_pred cEEEecCCCCCCCHHHHH---HHHhhcCCeEEEEeCCCc--------ccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 57 RTLLLRKINSNIEDSELK---ALFEQYGDVRTFYRASKH--------CGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~---~lFskfG~I~sv~~tgks--------kGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
+-+||-+|+..+.++++. +.|.+||.|..|.+.... ..-++|+|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888999887777666 589999999998753221 123999999999999999999999999999888
Q ss_pred cccCCC
Q 004289 126 HYSIPK 131 (763)
Q Consensus 126 ~~a~pk 131 (763)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776554
No 191
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.28 E-value=0.84 Score=49.26 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCeEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 71 SELKALFEQYGDVRTFYRA------SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 71 eeL~~lFskfG~I~sv~~t------gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
+++++..++||.|..|.+. ....--.||+|...++|.+|+-.|||..|+|+.++..|.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4677888999999988741 112234899999999999999999999999999988775
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.93 E-value=1 Score=52.35 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhhcccCCCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcc--cCceeEeeecCCcccE
Q 004289 103 IRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGV--YGEIKEIRETPQKIHQ 180 (763)
Q Consensus 103 ~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~--fGeVkeIrit~~skG~ 180 (763)
++-..+++++.-+..+..+-++|... .....|.++.|+..+-.|+++.||.. +-++.+|.+ .. ..-
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~----------~kRcIvilREIpettp~e~Vk~lf~~encPk~iscef-a~-N~n 214 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPN----------HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEF-AH-NDN 214 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccC----------cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee-ee-cCc
Confidence 33334445544445555555554321 22447888999999999999999974 667777765 11 124
Q ss_pred EEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEE
Q 004289 181 KYIEFYDTRAAEAALRELNS--RYIAGKQIKLE 211 (763)
Q Consensus 181 aFVeF~d~esA~kAL~~LnG--~~I~Gr~LkVe 211 (763)
-||+|++..+|+.|.+.|.. ++|.||+|..+
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 58999999999999988754 56777766543
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.92 E-value=2 Score=38.58 Aligned_cols=55 Identities=9% Similarity=0.245 Sum_probs=41.4
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
.+|---.|..+...||.++|+.||.|.--.+ ...-|||...+.+.|..|++.++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4444449999999999999999999855444 245899999999999999998864
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.17 E-value=2.7 Score=35.66 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=40.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhc----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh
Q 004289 57 RTLLLRKINSNIEDSELKALFEQY----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSL 113 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskf----G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~L 113 (763)
.+|+|+++. +++-++|+.+|..| ++.+-=.+ .--.|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWI---dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWI---DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEe---cCCcEEEEECCHHHHHHHHHcC
Confidence 479999996 69999999999999 54332223 2235789999999999999765
No 195
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.43 E-value=0.4 Score=57.80 Aligned_cols=74 Identities=14% Similarity=0.213 Sum_probs=62.4
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCee--CCeEEEEEeccCch
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI--AGKQIKLEPSHLRG 217 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I--~Gr~LkVe~a~~k~ 217 (763)
+.++.|.+...+-.-|..+|..||+|++++.. +.-..+.|+|..++.|..|+++|+|+++ -|-+.+|.+++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 55666777788889999999999999998752 2356899999999999999999999886 47889999988754
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.44 E-value=2.2 Score=43.26 Aligned_cols=75 Identities=11% Similarity=0.147 Sum_probs=49.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcc-cCce---eEee--e-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC----
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGV-YGEI---KEIR--E-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG---- 205 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~-fGeV---keIr--i-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G---- 205 (763)
...|+|++||+.+|++++.+.+.. +++- ..+. . ....-.-|+|.|.+.++...-...++|..+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 348999999999999999997776 6655 2332 1 11112369999999999999999999977643
Q ss_pred -eEEEEEeccC
Q 004289 206 -KQIKLEPSHL 215 (763)
Q Consensus 206 -r~LkVe~a~~ 215 (763)
.+..|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3556666643
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.23 E-value=1.5 Score=44.90 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=45.1
Q ss_pred CHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhh--hcccCCCcccccccCC
Q 004289 69 EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLDIHYSIP 130 (763)
Q Consensus 69 tEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Ln--g~~l~Gr~L~V~~a~p 130 (763)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.++|++|...|+ +..+.|..++|-|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888765 3455568999999999999999999 8899999999988743
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.18 E-value=1.6 Score=42.09 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=76.5
Q ss_pred EEecCCC--CCCCHHHHHHHHhh-cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCC
Q 004289 59 LLLRKIN--SNIEDSELKALFEQ-YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPS 135 (763)
Q Consensus 59 LfVgNLP--~~vtEeeL~~lFsk-fG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~ 135 (763)
..|+.+- ...+-..|...+.+ .+....+.+..-..++..++|.+.++++++++ .....+.+..+.++.-.|..+..
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~ 96 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPS 96 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccc
Confidence 4455442 33566666665553 23322333333367899999999999999986 34445677777776655544433
Q ss_pred cccc--ccceeEEeccCCC-CCHHHHHHHhcccCceeEeeecC
Q 004289 136 EKEI--NQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETP 175 (763)
Q Consensus 136 ~~~~--~~~tLfVgNLp~s-vTeedLrelFs~fGeVkeIrit~ 175 (763)
+... ..--|-|.|||.. .+++-|+++-+..|++.++....
T Consensus 97 ~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 97 EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 3222 2235777899987 78899999999999999998743
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.34 E-value=0.86 Score=50.08 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=62.3
Q ss_pred ceeEEeccCCCCCHHHHH---HHhcccCceeEeeecCCc-----c---cEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 004289 142 GTLVVFNLDSSVSNDELH---HIFGVYGEIKEIRETPQK-----I---HQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLr---elFs~fGeVkeIrit~~s-----k---G~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkV 210 (763)
.-+||-+|+..+-++++. +.|.+||.|..|...... . --++|+|...++|..||...+|....|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467788888776555543 678899999998763322 1 14899999999999999999999999999999
Q ss_pred EeccCchhHH
Q 004289 211 EPSHLRGLRK 220 (763)
Q Consensus 211 e~a~~k~~rr 220 (763)
.+...+..-.
T Consensus 158 ~~gttkycs~ 167 (327)
T KOG2068|consen 158 SLGTTKYCSF 167 (327)
T ss_pred hhCCCcchhH
Confidence 9988876443
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.34 E-value=7.1 Score=42.63 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=56.5
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE-EEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ-IKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~-LkVe~a~~k~ 217 (763)
..-+-|.+.++.-. .-|..+|++||+|..... +..-.+-+|.|..+-+|.|||. .||+.|.|.. |=|..+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 34677778877643 356678999999988653 4566799999999999999997 6899998854 4467666554
No 201
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=79.10 E-value=6.6 Score=33.34 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=39.8
Q ss_pred ceeEEeccCCCCCHHHHHHHhccc----CceeEeeecCCcccEEEEEEcCHHHHHHHHHHh
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVY----GEIKEIRETPQKIHQKYIEFYDTRAAEAALREL 198 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~f----GeVkeIrit~~skG~aFVeF~d~esA~kAL~~L 198 (763)
..|+|.+++ +++.+||+.+|..| +. ..|.... ..-|=|-|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWId--DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWID--DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence 479999985 48899999999998 32 2232211 235778899999999999865
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.67 E-value=1.2 Score=53.82 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=60.4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhccc--CCCcccccccCCCC
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT--RSGKLDIHYSIPKD 132 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l--~Gr~L~V~~a~pk~ 132 (763)
+.++-|.+-..+-..|..++.+||.|.+.++ -+.-..|.|+|...+.|..|+++|+|+++ -|.+.+|.++++-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3445566667888889999999999999886 34455799999999999999999999885 48888888876543
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.10 E-value=4.3 Score=35.08 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCCHHHHHHHhcccCcee-----EeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 152 SVSNDELHHIFGVYGEIK-----EIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 152 svTeedLrelFs~fGeVk-----eIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.++..+|..++..-+.|. .|++ ...|+||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467778888887665543 3555 45699998874 5889999999999999999999875
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.79 E-value=1.6 Score=50.00 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=52.9
Q ss_pred CHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 154 SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 154 TeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
+..+|...|.+||+|..|.+.- .--.|.|+|.+..+|-+|.. .++..|.++.|+|.|-.+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 4588999999999999988632 35689999999999977764 78999999999999998865
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.49 E-value=2.4 Score=50.30 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=61.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
....++||+|+-..+.++-++.+...+|.|..++... |+|++|..+..+.+|+..+....+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456999999999999999999999999998876532 999999999999999999999889887776544
No 206
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=74.81 E-value=3.6 Score=43.95 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=51.7
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhhh
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQN 115 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~----~tgkskGfAFV~F~d~e~AekAl~~Lng 115 (763)
..|||.||...+.-+.|.+.|+.||+|.... ..++..+-++|.|...-.|.+|++....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 6899999999999999999999999886432 4778888999999999999999987643
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.68 E-value=8.1 Score=33.15 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=43.5
Q ss_pred CCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 004289 152 SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210 (763)
Q Consensus 152 svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkV 210 (763)
.++-++++..+..|+-. +|+ .+..|| ||-|.+.++|+++.+..+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47789999999998753 333 233444 68899999999999999999998887765
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.62 E-value=4.8 Score=43.87 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=45.2
Q ss_pred ecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 61 LRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 61 VgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
|-++|+. .-..|..+|++||+|...... ..-.+-.|.|.+.-+|++||. .+|+.|.|.
T Consensus 202 VfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 202 VFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred EeccCcc-chhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 3355543 345677999999999998764 566699999999999999995 577777653
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=73.43 E-value=19 Score=33.84 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=47.2
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCce-eEeeecCC---cccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRETPQ---KIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeV-keIrit~~---skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
...+.+...|..++-++|..+.+.+-+. ..+++..+ .+-.++++|.+.++|..-.+..||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3466666666677778887777666554 34555332 33469999999999999999999998875
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.12 E-value=7.6 Score=33.33 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 67 NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 67 ~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
.++-++++..+.+|+-.+-+. ...|| ||.|.+.++|++|.+..+++.+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~---d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRD---DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcceEEe---cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 578899999999998544332 23344 7889999999999999998877655544
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.71 E-value=27 Score=41.28 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=78.2
Q ss_pred CCCCCCcEEEecCCCCC-CCHHHHHHHHhhc----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSN-IEDSELKALFEQY----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~-vtEeeL~~lFskf----G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
....++++|-|-|+.++ +...+|..+|..| |.|.+|.+ +.+. |. ...|....+.|-++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~I-YpSe------FG--------keRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKI-YPSE------FG--------KERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEe-chhh------hh--------HHHhhhhcccCChhhh
Confidence 34567899999999987 8999999999855 58888887 2221 21 2234444556655544
Q ss_pred cccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 126 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 126 ~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
..+.+...... .+...-++-.++-+.+|+. ....--||.|+|.+++.|.+....++|.++..
T Consensus 234 --~~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~------~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 --FKPVEEYKESE----------SDDEEEEDVDREKLRQYQL------NRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred --ccccccCcccc----------cchhhhhhHHHHHHHHHHh------hhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 12222221111 1111111222333344431 11122389999999999999999999998875
Q ss_pred --eEEEEEec
Q 004289 206 --KQIKLEPS 213 (763)
Q Consensus 206 --r~LkVe~a 213 (763)
..|-+.|-
T Consensus 296 S~~~~DLRFI 305 (650)
T KOG2318|consen 296 SANKLDLRFI 305 (650)
T ss_pred ccceeeeeec
Confidence 45555553
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=66.97 E-value=4.5 Score=48.14 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
.+.-+|||+||...+.++-++.+...+|-|.+++... |+|..|.....+.+|+..+....+++.++.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456999999999999999999999999999887522 999999999999999999998888888876643
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=66.33 E-value=5.9 Score=35.91 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=43.9
Q ss_pred EEEEeCCHHHHHHHHHHhhhc--ccCCCcccccccCCCCC-----CCccccccceeEEeccCCCCCHHHHHHHhc
Q 004289 96 VTISYYDIRAARNAMKSLQNK--LTRSGKLDIHYSIPKDN-----PSEKEINQGTLVVFNLDSSVSNDELHHIFG 163 (763)
Q Consensus 96 AFV~F~d~e~AekAl~~Lng~--~l~Gr~L~V~~a~pk~~-----~~~~~~~~~tLfVgNLp~svTeedLrelFs 163 (763)
|+|+|.+..-|++.++. ..+ .+.++.++|.-..-... ........++|-|.|||..+.+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999863 222 34555555533211111 111123456999999999999999997654
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.45 E-value=1.9e+02 Score=31.92 Aligned_cols=147 Identities=17% Similarity=0.257 Sum_probs=91.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCC------------CcccEEEEEeCCHHHHHHHH----HHhhh
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRAS------------KHCGFVTISYYDIRAARNAM----KSLQN 115 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tg------------kskGfAFV~F~d~e~AekAl----~~Lng 115 (763)
++--+|.|.+.|+..+++--++...|-+||+|++|++-. +......+.|-+.+.+-... +.|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999999999999522 23568999999998765543 22332
Q ss_pred --cccCCCcccccccCCC----C--CCCccc----------------cccceeEEeccCCCCCHHH-HHHHh---cccCc
Q 004289 116 --KLTRSGKLDIHYSIPK----D--NPSEKE----------------INQGTLVVFNLDSSVSNDE-LHHIF---GVYGE 167 (763)
Q Consensus 116 --~~l~Gr~L~V~~a~pk----~--~~~~~~----------------~~~~tLfVgNLp~svTeed-LrelF---s~fGe 167 (763)
+.+....|.+.|..-+ . +..+.+ ...+.|.|.=- ..+.+++ +.+.+ ..=+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 3467777877665321 1 000000 11335555433 3332333 33222 22222
Q ss_pred ----eeEeeec-------CCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 168 ----IKEIRET-------PQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 168 ----VkeIrit-------~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
|+.|.+. .=+++||.+.|-+..-|...+.-|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3335441 1125699999999999988887664
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=57.36 E-value=5 Score=46.10 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=61.5
Q ss_pred CCCCCcEEEecCCCCCC-CHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 52 DEHPSRTLLLRKINSNI-EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~v-tEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
-+...+.|-+.-+|... +-.+|...|.+||+|..|.+... ---|.|+|.+..+|-+|.+ ..+..|.++.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34445566677677665 45688899999999999998444 4479999999999977773 688899999999999776
Q ss_pred CC
Q 004289 131 KD 132 (763)
Q Consensus 131 k~ 132 (763)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=52.37 E-value=42 Score=28.93 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHhhcC-----CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 66 SNIEDSELKALFEQYG-----DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 66 ~~vtEeeL~~lFskfG-----~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..++..+|..++..-+ +|-.|.+ ...|.||+-.. +.|+++++.|++..+.|++++|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 3578888888888664 5556666 34588998765 488999999999999999999865
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.85 E-value=6.1 Score=42.50 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=44.8
Q ss_pred CCCCCcEEEecCCCCC------------CCHHHHHHHHhhcCCeEEEEe----------CCCc-----ccE---------
Q 004289 52 DEHPSRTLLLRKINSN------------IEDSELKALFEQYGDVRTFYR----------ASKH-----CGF--------- 95 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~------------vtEeeL~~lFskfG~I~sv~~----------tgks-----kGf--------- 95 (763)
+++| .||++.+||-. -+++.|+..|+.||+|+.|.+ +++. +||
T Consensus 146 gerp-dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 146 GERP-DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCC-CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 4444 48889888843 367889999999999999872 4443 334
Q ss_pred EEEEeCCHHHHHHHHHHhhhccc
Q 004289 96 VTISYYDIRAARNAMKSLQNKLT 118 (763)
Q Consensus 96 AFV~F~d~e~AekAl~~Lng~~l 118 (763)
|||+|..-..-..||.+|.|..+
T Consensus 225 ayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchH
Confidence 34555555555667777777543
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.75 E-value=61 Score=37.46 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=52.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCc-eeEeeecCC---cccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRETPQ---KIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGe-VkeIrit~~---skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
...|+|-.+|..++-.||..++..+-. |..|++..+ .+-..+|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 668999999999999999999986543 455665332 23368999999999999999999998874
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.58 E-value=56 Score=35.68 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=38.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHH
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRA 105 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~ 105 (763)
.-|+|+||+.++...||+..+.+-+-+---..-.-+.|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 4699999999999999999999877443222334577899999988643
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.77 E-value=97 Score=35.39 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=43.5
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHH
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE 197 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~ 197 (763)
.-.|-|.++|.....+||...|+.|+.- .++|.-..+.++|--|.....|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecceeEEeecchHHHHHHhhc
Confidence 4588999999999999999999999862 2222112245899999999999999863
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=32.28 E-value=28 Score=35.69 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=51.7
Q ss_pred cEEEecCCCCCCCHH-HHH----HHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC-cccccccCC
Q 004289 57 RTLLLRKINSNIEDS-ELK----ALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG-KLDIHYSIP 130 (763)
Q Consensus 57 RtLfVgNLP~~vtEe-eL~----~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr-~L~V~~a~p 130 (763)
.++++.+|+..+-.+ +.+ .+|.+|-+...... -++.+..-|.|.+.++|..|...++...|.|+ .+..-|+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 467778887664333 333 45666665554443 45777889999999999999999999999988 666655543
No 222
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=30.71 E-value=40 Score=41.63 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=25.4
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhhcCCe
Q 004289 53 EHPSRTLLLRKINSN-IEDSELKALFEQYGDV 83 (763)
Q Consensus 53 e~psRtLfVgNLP~~-vtEeeL~~lFskfG~I 83 (763)
.-++|||+|..||.+ .++++|.++|.+-+..
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~ 236 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLKVG 236 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcCee
Confidence 347899999999988 5778899999976533
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.49 E-value=74 Score=32.71 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=49.9
Q ss_pred eeEEeccCCCCCH-----HHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-EEEEEeccCc
Q 004289 143 TLVVFNLDSSVSN-----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIKLEPSHLR 216 (763)
Q Consensus 143 tLfVgNLp~svTe-----edLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr-~LkVe~a~~k 216 (763)
++++.+++..+-. .....+|.+|-+..-.++. ++.+..-|.|.+++.|..|...+++..|.|+ .++.-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 5666777665322 2234555555544333321 1344667889999999999999999999998 8888887765
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 224
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.37 E-value=90 Score=33.99 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=38.2
Q ss_pred EEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcc
Q 004289 96 VTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGV 164 (763)
Q Consensus 96 AFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~ 164 (763)
|||+|.+.++|..|.+.+.... .+.+.+..+.+ .+.|+-.||..+..+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe----------P~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE----------PDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC----------cccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998655433 34455554422 223667788767667777766553
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=24.78 E-value=71 Score=30.34 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=28.3
Q ss_pred EEEecCCCCC---------CCHHHHHHHHhhcCCeE--EEEeCCCcccEEEEEeCCHH-HHHHHH
Q 004289 58 TLLLRKINSN---------IEDSELKALFEQYGDVR--TFYRASKHCGFVTISYYDIR-AARNAM 110 (763)
Q Consensus 58 tLfVgNLP~~---------vtEeeL~~lFskfG~I~--sv~~tgkskGfAFV~F~d~e-~AekAl 110 (763)
++.|-|++.. ++-++|++.|..|..++ .+....-+.|+++|.|..-- --..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 4556666543 35578999999998654 44456668899999997643 334444
No 226
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=24.42 E-value=1.5e+02 Score=34.93 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=68.2
Q ss_pred hhCCCcceEEEecccccc------cceeEEEEEecCCccchHHHHHHhcCccccCCCCcc-------EEEEEeeeccc-H
Q 004289 615 ERHKGTYDFIYLPIDFKN------KCNVGYAFINMTDPSQIVPFYQSFNGKKWEKFNSEK-------VASLAYARIQG-K 680 (763)
Q Consensus 615 e~~~g~yDF~YlpiDf~~------~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K-------~~~v~yA~iQG-~ 680 (763)
....+.-|=|-.|.-+.+ +-.=+--|.||+ ++.+..+...|....|..|.-++ ||-..|...=. .
T Consensus 224 ~Y~~~~tDEFv~p~~i~~~~~~~i~d~DsvIf~NFR-~DRarQl~~~l~~~~f~gF~r~~~~~~~~~vtmt~Y~~~~~~~ 302 (509)
T COG0696 224 SYARGITDEFVKPTVIYGEPVAAIEDGDSVIFFNFR-PDRARQLTRALTNDDFDGFSRDKKVPKNDFVTMTEYDGSDPLP 302 (509)
T ss_pred HHhcCCCcccccceeecCcccccccCCCeEEEeccC-hhHHHHHHHHhccccccccCcccccccCceEEEEecCCCCCcc
Confidence 345677776655554443 123356799998 77888899999888888887543 34555543211 1
Q ss_pred H---------HHHHHhccCcc----cCCCCCccceEEecCCCCCCCccccCCCCCCCCCCCCCC
Q 004289 681 A---------ALIAHFQNSSL----MNEDKRCRPILFNTDGPNAGDQVPFPMGVNFRTRPGKAR 731 (763)
Q Consensus 681 ~---------~l~~~f~~s~v----~~~~~~~rP~~f~~~g~~~g~~~~fp~~~n~~~~~~~~r 731 (763)
- .|.+-+.+--+ ..|++.|-++.|.-+| |.|+||+.-+-+=..++|-.
T Consensus 303 vaF~p~~i~NtlgEv~~~~gl~QlRiAETEKYAHVTfFfnG---G~E~~~~~e~r~li~SpkVa 363 (509)
T COG0696 303 VAFPPENLKNTLGEVLSKHGLTQLRIAETEKYAHVTFFFNG---GVEEPFKGEDRILIPSPKVA 363 (509)
T ss_pred eecccccccccHHHHHHhcCchhhhhhhhccccceEEEecC---ccccccCCCccEeccCCCcc
Confidence 0 11222211111 2367889998877644 77999998775555555543
No 227
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.26 E-value=2.2e+02 Score=24.19 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCeEEEEeCCCc-ccEEEEEeCCHHHHHHHHHHhhh
Q 004289 71 SELKALFEQYGDVRTFYRASKH-CGFVTISYYDIRAARNAMKSLQN 115 (763)
Q Consensus 71 eeL~~lFskfG~I~sv~~tgks-kGfAFV~F~d~e~AekAl~~Lng 115 (763)
.+|++.++++| +...++++.. -++.|+-+.+.+.++++.+.+..
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 45667778999 5555554543 45888888899999999988754
No 228
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.25 E-value=1.1e+02 Score=27.01 Aligned_cols=35 Identities=6% Similarity=0.283 Sum_probs=26.4
Q ss_pred CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhc
Q 004289 82 DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK 116 (763)
Q Consensus 82 ~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~ 116 (763)
.|.++.....-+||.||+=.+..++.+|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 67788877889999999999999999999766553
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=4.3e+02 Score=30.51 Aligned_cols=141 Identities=13% Similarity=0.242 Sum_probs=77.4
Q ss_pred cCCCCCCCCCCcEEEecCCCCC-CCHHHHHHHHhhc----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCC
Q 004289 46 AGEHLNDEHPSRTLLLRKINSN-IEDSELKALFEQY----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS 120 (763)
Q Consensus 46 ~G~~p~~e~psRtLfVgNLP~~-vtEeeL~~lFskf----G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G 120 (763)
+|-.|....++.+|-|-|+.++ +.-.+|...|+.| |+|..|.+ +.+ +|...+ |....+.|
T Consensus 136 ag~~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i-yps------efGkeR--------m~~e~vqG 200 (622)
T COG5638 136 AGAVPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI-YPS------EFGKER--------MAAEHVQG 200 (622)
T ss_pred ccCccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe-chh------hhhHHH--------HhHhhccC
Confidence 4556666778999999999987 8888999888854 46766665 211 122222 22223333
Q ss_pred CcccccccCCCCCCCcc------------ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCH
Q 004289 121 GKLDIHYSIPKDNPSEK------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDT 188 (763)
Q Consensus 121 r~L~V~~a~pk~~~~~~------------~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~ 188 (763)
-+-.| | .|+++.... +.....+.-+.+...+.--.|++.- +..+ .--||.|++.++
T Consensus 201 pprdi-f-~~~d~~~ssqk~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyq-----lerl-----ryYyAvvec~d~ 268 (622)
T COG5638 201 PPRDI-F-TPADNQPSSQKFGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQ-----LERL-----RYYYAVVECEDI 268 (622)
T ss_pred Cchhh-c-cccccCcchhccCCccchhhhhcchhhhhhcccccchhHHHHHHHH-----hhhh-----eeEEEEEEeccc
Confidence 33222 1 122221100 0111122223333344444444321 1112 224899999999
Q ss_pred HHHHHHHHHhCCCeeCC--eEEEEEec
Q 004289 189 RAAEAALRELNSRYIAG--KQIKLEPS 213 (763)
Q Consensus 189 esA~kAL~~LnG~~I~G--r~LkVe~a 213 (763)
+.+......++|.+... ..+-+.|.
T Consensus 269 ~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 269 ETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhHHHHhccCccccccccceeeeeec
Confidence 99999999999987764 44444443
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.99 E-value=1.9e+02 Score=26.09 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=39.3
Q ss_pred EEecCCCCCCCHHHHHHHHhh-cC-CeEEEEeCCCccc--EEEEEeCCHHHHHHHHH
Q 004289 59 LLLRKINSNIEDSELKALFEQ-YG-DVRTFYRASKHCG--FVTISYYDIRAARNAMK 111 (763)
Q Consensus 59 LfVgNLP~~vtEeeL~~lFsk-fG-~I~sv~~tgkskG--fAFV~F~d~e~AekAl~ 111 (763)
-|+=.++.+++..+|++.+++ || +|..|.+.....+ =|||.+....+|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 344457889999999999996 66 6777775333344 49999999888887654
Done!