Query 004289
Match_columns 763
No_of_seqs 456 out of 2124
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.1E-30 3.9E-35 263.6 19.3 166 53-220 12-185 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.2E-29 4E-34 241.7 19.1 157 57-215 1-166 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 6.2E-29 2.1E-33 238.0 19.2 155 55-213 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 7.2E-29 2.5E-33 236.5 19.1 155 55-213 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 5.8E-29 2E-33 244.4 18.0 169 50-220 7-187 (196)
6 2qfj_A FBP-interacting repress 100.0 8.6E-29 2.9E-33 246.9 18.5 164 54-217 26-206 (216)
7 2adc_A Polypyrimidine tract-bi 100.0 1.7E-28 5.9E-33 250.3 20.8 165 52-216 30-228 (229)
8 3pgw_A U1-A; protein-RNA compl 100.0 1.9E-28 6.5E-33 255.8 20.6 163 52-214 5-281 (282)
9 1fje_B Nucleolin RBD12, protei 100.0 2E-28 6.7E-33 237.2 17.8 162 52-216 9-174 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 2.4E-28 8.1E-33 235.2 18.0 155 54-214 2-172 (172)
11 2cjk_A Nuclear polyadenylated 100.0 9.8E-29 3.3E-33 236.8 14.1 155 55-216 2-166 (167)
12 2yh0_A Splicing factor U2AF 65 100.0 3.4E-28 1.2E-32 239.3 17.3 161 55-217 3-195 (198)
13 3nmr_A Cugbp ELAV-like family 100.0 7.1E-28 2.4E-32 231.7 18.6 157 55-214 2-175 (175)
14 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-28 8.8E-33 241.6 15.8 161 56-216 3-197 (198)
15 3tyt_A Heterogeneous nuclear r 100.0 8.4E-28 2.9E-32 243.1 18.6 159 55-213 3-204 (205)
16 3smz_A Protein raver-1, ribonu 99.9 2.4E-27 8.1E-32 247.7 18.8 166 54-220 93-268 (284)
17 3smz_A Protein raver-1, ribonu 99.9 6.5E-26 2.2E-30 236.9 19.8 152 54-217 20-176 (284)
18 2ghp_A U4/U6 snRNA-associated 99.9 4E-26 1.4E-30 239.4 17.7 161 55-216 116-291 (292)
19 3sde_A Paraspeckle component 1 99.9 3.7E-26 1.3E-30 237.7 16.9 156 53-219 19-182 (261)
20 2ghp_A U4/U6 snRNA-associated 99.9 2.7E-25 9.2E-30 233.1 16.4 158 49-218 34-199 (292)
21 2i2y_A Fusion protein consists 99.8 6.4E-20 2.2E-24 175.3 12.3 127 90-217 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 4.9E-19 1.7E-23 170.0 14.9 130 88-217 8-151 (158)
23 4f25_A Polyadenylate-binding p 99.8 4.8E-19 1.7E-23 162.5 9.4 103 55-157 4-113 (115)
24 3lqv_A PRE-mRNA branch site pr 99.7 7.4E-17 2.5E-21 146.9 7.0 103 53-167 5-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.6 3.8E-16 1.3E-20 140.0 10.4 74 142-215 20-98 (99)
26 4fxv_A ELAV-like protein 1; RN 99.6 3.1E-16 1.1E-20 140.6 9.2 76 55-130 18-98 (99)
27 2hvz_A Splicing factor, argini 99.6 4.1E-16 1.4E-20 138.8 9.2 95 57-151 1-101 (101)
28 2lea_A Serine/arginine-rich sp 99.6 1.8E-16 6.2E-21 149.9 6.6 119 94-217 5-128 (135)
29 3s8s_A Histone-lysine N-methyl 99.6 1.8E-15 6E-20 138.4 11.7 82 140-221 5-91 (110)
30 1whw_A Hypothetical protein ri 99.6 2.2E-15 7.6E-20 133.4 11.5 83 53-135 5-92 (99)
31 3r27_A HnRNP L, heterogeneous 99.6 1.3E-15 4.4E-20 137.8 10.1 80 52-132 17-98 (100)
32 1sjq_A Polypyrimidine tract-bi 99.6 1.9E-15 6.6E-20 137.8 10.8 84 52-136 12-97 (105)
33 1wex_A Hypothetical protein (r 99.6 3.2E-15 1.1E-19 135.6 12.3 85 49-134 8-94 (104)
34 2lxi_A RNA-binding protein 10; 99.6 4.4E-16 1.5E-20 137.3 6.3 79 56-134 1-86 (91)
35 3s8s_A Histone-lysine N-methyl 99.6 1.4E-15 4.9E-20 139.0 9.7 79 53-131 3-86 (110)
36 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.6E-15 5.3E-20 147.5 10.5 123 98-220 11-156 (165)
37 2do4_A Squamous cell carcinoma 99.6 2.9E-15 9.8E-20 133.1 11.1 84 50-133 11-98 (100)
38 2cpz_A CUG triplet repeat RNA- 99.6 2.8E-15 9.5E-20 136.6 11.1 87 49-135 18-109 (115)
39 4f25_A Polyadenylate-binding p 99.6 2.3E-15 7.8E-20 138.0 10.1 80 141-220 5-87 (115)
40 1x5u_A Splicing factor 3B subu 99.6 4.3E-15 1.5E-19 132.9 11.6 85 50-134 9-98 (105)
41 3pgw_A U1-A; protein-RNA compl 99.6 2.1E-13 7.3E-18 141.9 26.2 79 139-217 7-91 (282)
42 2cph_A RNA binding motif prote 99.6 5.3E-15 1.8E-19 132.6 11.9 85 50-134 9-100 (107)
43 2dgs_A DAZ-associated protein 99.6 5E-15 1.7E-19 131.2 11.6 83 52-135 6-93 (99)
44 2dgv_A HnRNP M, heterogeneous 99.6 5.3E-15 1.8E-19 129.0 11.4 82 52-133 4-88 (92)
45 2ad9_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 139.2 10.6 91 47-138 22-114 (119)
46 2dnz_A Probable RNA-binding pr 99.6 4.9E-15 1.7E-19 130.0 11.2 81 54-134 3-88 (95)
47 2dgo_A Cytotoxic granule-assoc 99.6 5.9E-15 2E-19 134.3 11.7 85 50-134 9-98 (115)
48 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.1E-15 2.4E-19 131.2 11.9 84 51-134 10-96 (103)
49 2dnh_A Bruno-like 5, RNA bindi 99.6 8E-15 2.7E-19 131.1 12.0 83 52-134 11-100 (105)
50 2x1f_A MRNA 3'-END-processing 99.6 3.9E-15 1.3E-19 131.4 9.7 79 55-133 1-84 (96)
51 2dnm_A SRP46 splicing factor; 99.6 3.9E-15 1.3E-19 132.9 9.9 85 49-133 6-95 (103)
52 2lxi_A RNA-binding protein 10; 99.6 1.3E-15 4.5E-20 134.2 6.6 77 141-217 1-84 (91)
53 1why_A Hypothetical protein ri 99.6 8E-15 2.7E-19 129.6 11.6 80 53-133 14-95 (97)
54 2d9p_A Polyadenylate-binding p 99.6 6.3E-15 2.1E-19 131.6 11.0 85 51-135 10-97 (103)
55 2cq3_A RNA-binding protein 9; 99.6 1E-14 3.5E-19 130.1 12.2 85 51-135 10-97 (103)
56 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.3E-15 1.1E-19 128.8 8.7 78 54-131 4-86 (87)
57 2wbr_A GW182, gawky, LD47780P; 99.6 4.2E-15 1.4E-19 131.3 9.3 81 140-221 6-86 (89)
58 3md1_A Nuclear and cytoplasmic 99.6 4.5E-15 1.6E-19 126.8 9.3 77 56-132 1-82 (83)
59 1x4a_A Splicing factor, argini 99.6 1E-14 3.6E-19 131.6 12.2 83 51-133 17-101 (109)
60 1x5s_A Cold-inducible RNA-bind 99.6 6.1E-15 2.1E-19 131.2 10.5 83 52-134 8-95 (102)
61 2cq1_A PTB-like protein L; RRM 99.6 6E-15 2.1E-19 133.3 10.5 84 50-134 9-94 (101)
62 2cq0_A Eukaryotic translation 99.6 4.8E-15 1.6E-19 132.3 9.7 84 51-134 10-98 (103)
63 1x4d_A Matrin 3; structural ge 99.6 4.5E-15 1.6E-19 134.5 9.5 81 52-133 11-94 (102)
64 2jrs_A RNA-binding protein 39; 99.6 7.2E-15 2.5E-19 133.5 10.7 83 50-132 20-107 (108)
65 2e5h_A Zinc finger CCHC-type a 99.6 5.8E-15 2E-19 129.3 9.6 78 52-129 12-94 (94)
66 2cpf_A RNA binding motif prote 99.6 5.8E-15 2E-19 130.4 9.6 81 54-134 3-91 (98)
67 2dgp_A Bruno-like 4, RNA bindi 99.6 8.5E-15 2.9E-19 131.2 10.8 84 50-133 7-98 (106)
68 2do4_A Squamous cell carcinoma 99.6 1E-14 3.4E-19 129.5 11.1 81 138-218 14-98 (100)
69 3bs9_A Nucleolysin TIA-1 isofo 99.6 9.1E-15 3.1E-19 126.0 10.5 77 140-216 5-86 (87)
70 1p27_B RNA-binding protein 8A; 99.6 7.1E-15 2.4E-19 131.7 10.2 83 50-132 17-104 (106)
71 1x4h_A RNA-binding protein 28; 99.6 1.1E-14 3.8E-19 131.3 11.5 85 50-134 9-104 (111)
72 1whw_A Hypothetical protein ri 99.6 7.9E-15 2.7E-19 129.8 10.3 80 139-218 6-90 (99)
73 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.6E-15 1.6E-19 132.0 8.8 83 52-134 8-95 (102)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.6E-15 2.3E-19 126.4 9.4 77 53-129 4-85 (85)
75 2cqc_A Arginine/serine-rich sp 99.6 6.5E-15 2.2E-19 129.0 9.4 79 52-130 11-94 (95)
76 2dnq_A RNA-binding protein 4B; 99.6 1.1E-14 3.9E-19 126.9 10.9 79 53-134 5-83 (90)
77 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.7E-19 124.5 10.5 76 142-217 2-82 (83)
78 1x4a_A Splicing factor, argini 99.6 1.1E-14 3.8E-19 131.4 11.0 80 138-217 19-100 (109)
79 2dhg_A TRNA selenocysteine ass 99.6 1.3E-14 4.4E-19 129.6 11.3 83 52-134 5-93 (104)
80 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.3E-14 4.5E-19 129.5 11.2 81 138-218 12-95 (103)
81 1x5t_A Splicing factor 3B subu 99.6 4.6E-15 1.6E-19 130.4 8.1 81 54-134 3-89 (96)
82 2cpj_A Non-POU domain-containi 99.6 6.8E-15 2.3E-19 130.5 9.2 81 52-133 11-91 (99)
83 2ywk_A Putative RNA-binding pr 99.6 5.8E-15 2E-19 129.5 8.6 82 49-130 9-94 (95)
84 2d9p_A Polyadenylate-binding p 99.6 9.2E-15 3.1E-19 130.5 10.0 82 138-219 12-96 (103)
85 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.4E-14 4.7E-19 124.4 10.6 76 139-214 5-85 (85)
86 2dgt_A RNA-binding protein 30; 99.6 1E-14 3.6E-19 127.6 10.1 83 49-134 3-85 (92)
87 2kxn_B Transformer-2 protein h 99.6 9.1E-15 3.1E-19 137.2 10.3 83 50-132 40-127 (129)
88 1x4f_A Matrin 3; structural ge 99.6 6.7E-15 2.3E-19 135.7 9.2 81 52-133 21-104 (112)
89 2cpz_A CUG triplet repeat RNA- 99.6 8.7E-15 3E-19 133.4 9.8 80 139-218 23-107 (115)
90 2ytc_A PRE-mRNA-splicing facto 99.6 8.4E-15 2.9E-19 125.9 9.2 79 50-129 6-85 (85)
91 2cqc_A Arginine/serine-rich sp 99.6 1.9E-14 6.5E-19 126.0 11.6 77 139-215 13-94 (95)
92 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.9E-19 130.2 10.3 83 50-134 9-97 (104)
93 2dh8_A DAZ-associated protein 99.6 9.9E-15 3.4E-19 130.7 9.6 85 50-135 10-99 (105)
94 2cph_A RNA binding motif prote 99.5 1.4E-14 4.6E-19 129.9 10.3 81 138-218 12-99 (107)
95 1x5u_A Splicing factor 3B subu 99.5 1.2E-14 4.1E-19 130.0 9.9 79 139-217 13-96 (105)
96 2cqd_A RNA-binding region cont 99.5 1.6E-14 5.5E-19 131.8 11.0 84 50-134 11-99 (116)
97 3r27_A HnRNP L, heterogeneous 99.5 1.2E-14 4E-19 131.5 9.8 78 139-217 19-98 (100)
98 2cq0_A Eukaryotic translation 99.5 1.6E-14 5.5E-19 128.9 10.6 79 139-217 13-96 (103)
99 2lkz_A RNA-binding protein 5; 99.5 5.9E-15 2E-19 131.8 7.7 76 140-215 8-94 (95)
100 2la4_A Nuclear and cytoplasmic 99.5 8.5E-15 2.9E-19 130.2 8.7 77 54-131 25-101 (101)
101 1oo0_B CG8781-PA, drosophila Y 99.5 1.4E-14 4.8E-19 130.8 10.2 81 139-219 24-109 (110)
102 1sjq_A Polypyrimidine tract-bi 99.5 6.8E-15 2.3E-19 134.2 8.1 79 140-219 15-95 (105)
103 2x1f_A MRNA 3'-END-processing 99.5 2E-14 6.8E-19 126.8 10.9 79 141-219 2-85 (96)
104 2dgo_A Cytotoxic granule-assoc 99.5 2E-14 6.8E-19 130.8 11.2 80 139-218 13-97 (115)
105 2dnh_A Bruno-like 5, RNA bindi 99.5 1.7E-14 5.7E-19 129.0 10.4 81 139-219 13-100 (105)
106 2div_A TRNA selenocysteine ass 99.5 1.4E-14 4.9E-19 128.2 9.8 80 53-132 6-95 (99)
107 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.1E-14 3.8E-19 129.5 9.1 80 139-218 10-94 (102)
108 1wf1_A RNA-binding protein RAL 99.5 1.2E-14 3.9E-19 131.7 9.2 95 119-217 6-101 (110)
109 2e5h_A Zinc finger CCHC-type a 99.5 2.7E-14 9.3E-19 125.0 11.3 76 139-214 14-94 (94)
110 1oo0_B CG8781-PA, drosophila Y 99.5 1.4E-14 4.7E-19 130.8 9.6 83 50-132 20-107 (110)
111 2a3j_A U1 small nuclear ribonu 99.5 1.8E-14 6.1E-19 135.4 10.6 82 52-133 25-112 (127)
112 1p27_B RNA-binding protein 8A; 99.5 1.4E-14 4.7E-19 129.8 9.4 79 139-217 21-104 (106)
113 2dnz_A Probable RNA-binding pr 99.5 1.6E-14 5.6E-19 126.6 9.7 78 140-217 4-86 (95)
114 3p5t_L Cleavage and polyadenyl 99.5 5.1E-15 1.7E-19 129.4 6.4 77 57-133 2-85 (90)
115 2dgu_A Heterogeneous nuclear r 99.5 2.2E-14 7.5E-19 128.3 10.6 81 52-135 7-87 (103)
116 2cq1_A PTB-like protein L; RRM 99.5 2.5E-14 8.5E-19 129.2 11.0 79 139-218 13-93 (101)
117 2khc_A Testis-specific RNP-typ 99.5 2.2E-14 7.4E-19 131.2 10.7 81 49-129 33-118 (118)
118 2cq3_A RNA-binding protein 9; 99.5 2.8E-14 9.6E-19 127.3 11.2 80 138-217 12-94 (103)
119 3pgw_S U1-70K; protein-RNA com 99.5 4E-15 1.4E-19 166.7 6.9 145 73-217 9-183 (437)
120 2e5j_A Methenyltetrahydrofolat 99.5 1.8E-14 6.3E-19 127.5 9.8 80 53-132 16-95 (97)
121 2dgs_A DAZ-associated protein 99.5 1.9E-14 6.4E-19 127.6 9.8 79 139-218 8-91 (99)
122 4a8x_A RNA-binding protein wit 99.5 1.7E-14 5.9E-19 124.3 9.3 77 141-217 4-86 (88)
123 2fc9_A NCL protein; structure 99.5 1.1E-14 3.9E-19 129.4 8.5 82 52-133 11-93 (101)
124 1x4h_A RNA-binding protein 28; 99.5 2.5E-14 8.6E-19 129.0 10.7 80 139-218 13-103 (111)
125 2dnq_A RNA-binding protein 4B; 99.5 1.5E-14 5.3E-19 126.1 8.9 76 139-217 6-81 (90)
126 1why_A Hypothetical protein ri 99.5 2.3E-14 7.7E-19 126.7 10.1 78 139-217 15-94 (97)
127 3ex7_B RNA-binding protein 8A; 99.5 2.1E-14 7.3E-19 132.6 10.3 85 50-134 16-105 (126)
128 1x4e_A RNA binding motif, sing 99.5 1.4E-14 5E-19 124.6 8.5 76 54-129 3-83 (85)
129 2la6_A RNA-binding protein FUS 99.5 1.9E-14 6.6E-19 127.6 9.6 79 51-129 8-99 (99)
130 1u6f_A Tcubp1, RNA-binding pro 99.5 2.6E-14 9E-19 134.3 11.0 84 51-134 37-125 (139)
131 1nu4_A U1A RNA binding domain; 99.5 1.1E-14 3.7E-19 128.3 7.8 82 52-133 4-91 (97)
132 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-14 3.6E-19 128.3 7.7 82 52-133 12-93 (96)
133 3p5t_L Cleavage and polyadenyl 99.5 5.4E-15 1.8E-19 129.3 5.8 76 142-217 2-84 (90)
134 1wf1_A RNA-binding protein RAL 99.5 3.1E-14 1.1E-18 128.8 11.0 78 52-132 23-101 (110)
135 2dnm_A SRP46 splicing factor; 99.5 1.7E-14 5.7E-19 128.8 9.0 79 139-217 11-94 (103)
136 1x5s_A Cold-inducible RNA-bind 99.5 1.2E-14 4.3E-19 129.2 8.1 80 139-218 10-94 (102)
137 2cq4_A RNA binding motif prote 99.5 1.4E-14 4.7E-19 131.9 8.5 81 138-219 22-107 (114)
138 2do0_A HnRNP M, heterogeneous 99.5 3.7E-14 1.3E-18 128.6 11.4 81 52-132 11-95 (114)
139 2dgx_A KIAA0430 protein; RRM d 99.5 2.5E-14 8.5E-19 126.7 10.0 78 140-217 8-91 (96)
140 2ywk_A Putative RNA-binding pr 99.5 2.8E-14 9.6E-19 125.1 10.2 77 139-215 14-94 (95)
141 1x5t_A Splicing factor 3B subu 99.5 1.5E-14 5.1E-19 127.1 8.5 79 140-218 4-88 (96)
142 2fy1_A RNA-binding motif prote 99.5 2.2E-14 7.4E-19 131.9 9.8 82 52-133 3-88 (116)
143 2dng_A Eukaryotic translation 99.5 2.7E-14 9.1E-19 127.6 10.1 83 50-134 9-96 (103)
144 3ns6_A Eukaryotic translation 99.5 6.2E-15 2.1E-19 131.8 5.9 78 54-131 4-93 (100)
145 1fjc_A Nucleolin RBD2, protein 99.5 1.7E-14 5.7E-19 127.0 8.7 79 139-217 14-92 (96)
146 2cpe_A RNA-binding protein EWS 99.5 2E-14 6.8E-19 130.4 9.3 84 51-134 10-106 (113)
147 2jrs_A RNA-binding protein 39; 99.5 2.4E-14 8.1E-19 130.1 9.8 80 138-217 23-107 (108)
148 2jvo_A Nucleolar protein 3; nu 99.5 2E-14 7E-19 130.6 9.3 81 136-219 26-106 (108)
149 2dgv_A HnRNP M, heterogeneous 99.5 1.6E-14 5.4E-19 126.0 8.2 79 139-217 6-87 (92)
150 2ad9_A Polypyrimidine tract-bi 99.5 1.4E-14 4.7E-19 135.0 8.3 80 139-219 29-110 (119)
151 1u6f_A Tcubp1, RNA-binding pro 99.5 2.7E-14 9.1E-19 134.2 10.4 82 137-218 38-124 (139)
152 1x4c_A Splicing factor, argini 99.5 3.4E-14 1.2E-18 128.4 10.7 81 52-134 11-96 (108)
153 2err_A Ataxin-2-binding protei 99.5 1.3E-14 4.6E-19 131.6 8.0 80 52-131 25-107 (109)
154 2dnp_A RNA-binding protein 14; 99.5 3.1E-14 1.1E-18 124.1 10.0 79 52-133 5-83 (90)
155 1wex_A Hypothetical protein (r 99.5 2E-14 6.8E-19 130.4 9.0 78 139-217 13-92 (104)
156 2jvr_A Nucleolar protein 3; RN 99.5 2.3E-14 7.7E-19 131.8 9.4 77 141-217 28-106 (111)
157 1p1t_A Cleavage stimulation fa 99.5 1.4E-14 5E-19 129.0 7.9 83 139-221 6-93 (104)
158 1p1t_A Cleavage stimulation fa 99.5 6.5E-15 2.2E-19 131.3 5.6 82 52-133 4-90 (104)
159 4a8x_A RNA-binding protein wit 99.5 2.2E-14 7.5E-19 123.7 8.8 78 55-132 3-86 (88)
160 1x4g_A Nucleolysin TIAR; struc 99.5 3.4E-14 1.1E-18 128.4 10.3 82 52-134 21-102 (109)
161 2dgp_A Bruno-like 4, RNA bindi 99.5 2.3E-14 7.9E-19 128.4 9.2 80 138-217 10-97 (106)
162 2err_A Ataxin-2-binding protei 99.5 2.7E-14 9.3E-19 129.6 9.7 80 137-216 25-107 (109)
163 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-14 5.6E-19 127.6 7.9 73 55-128 6-78 (89)
164 2cpf_A RNA binding motif prote 99.5 1.9E-14 6.4E-19 127.1 8.4 78 140-217 4-89 (98)
165 2khc_A Testis-specific RNP-typ 99.5 3.1E-14 1.1E-18 130.1 10.1 77 138-214 37-118 (118)
166 2cpx_A Hypothetical protein FL 99.5 2.3E-14 8E-19 130.2 9.1 83 52-134 21-108 (115)
167 2do0_A HnRNP M, heterogeneous 99.5 5.9E-14 2E-18 127.3 11.7 79 139-217 13-95 (114)
168 2cqh_A IGF-II mRNA-binding pro 99.5 1.3E-14 4.5E-19 127.1 7.2 80 53-134 5-86 (93)
169 2dnp_A RNA-binding protein 14; 99.5 3.3E-14 1.1E-18 123.9 9.7 77 138-217 6-82 (90)
170 2lkz_A RNA-binding protein 5; 99.5 9.5E-15 3.3E-19 130.5 6.3 78 53-130 6-94 (95)
171 2dgt_A RNA-binding protein 30; 99.5 4.9E-14 1.7E-18 123.3 10.7 77 138-217 7-83 (92)
172 2m2b_A RNA-binding protein 10; 99.5 1.7E-14 5.8E-19 135.0 8.3 84 49-133 16-110 (131)
173 2kvi_A Nuclear polyadenylated 99.5 2.1E-14 7.2E-19 127.0 8.4 80 52-134 6-86 (96)
174 1x4d_A Matrin 3; structural ge 99.5 2.2E-14 7.4E-19 130.0 8.6 77 140-217 14-93 (102)
175 1whx_A Hypothetical protein ri 99.5 1.6E-14 5.6E-19 131.7 7.9 78 53-131 7-84 (111)
176 2la4_A Nuclear and cytoplasmic 99.5 2E-14 6.9E-19 127.8 8.3 76 140-216 26-101 (101)
177 2cpd_A Apobec-1 stimulating pr 99.5 5.7E-14 1.9E-18 124.6 11.1 79 52-133 11-91 (99)
178 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.7E-14 5.9E-19 128.6 7.7 79 52-132 15-99 (100)
179 3ulh_A THO complex subunit 4; 99.5 3.1E-14 1.1E-18 127.7 9.4 79 51-129 24-106 (107)
180 2dis_A Unnamed protein product 99.5 4.1E-14 1.4E-18 127.3 10.3 82 54-135 6-96 (109)
181 2xnq_A Nuclear polyadenylated 99.5 4.1E-14 1.4E-18 125.9 10.0 78 51-131 17-95 (97)
182 2la6_A RNA-binding protein FUS 99.5 4.5E-14 1.5E-18 125.3 10.2 76 139-214 11-99 (99)
183 2fc8_A NCL protein; structure 99.5 2.4E-14 8.2E-19 127.4 8.4 83 52-134 11-95 (102)
184 2cpj_A Non-POU domain-containi 99.5 3.5E-14 1.2E-18 126.0 9.5 78 139-217 13-90 (99)
185 2cpi_A CCR4-NOT transcription 99.5 4.4E-14 1.5E-18 128.5 10.3 79 139-217 13-102 (111)
186 1x5o_A RNA binding motif, sing 99.5 8.2E-14 2.8E-18 126.5 12.1 80 52-131 21-112 (114)
187 2ytc_A PRE-mRNA-splicing facto 99.5 4.2E-14 1.4E-18 121.5 9.7 76 138-214 9-85 (85)
188 2xnq_A Nuclear polyadenylated 99.5 5.8E-14 2E-18 125.0 10.8 76 139-217 20-96 (97)
189 2dgu_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 127.1 9.4 78 139-219 9-86 (103)
190 2cpe_A RNA-binding protein EWS 99.5 3.7E-14 1.3E-18 128.6 9.8 81 138-218 12-105 (113)
191 2cqp_A RNA-binding protein 12; 99.5 4.2E-14 1.4E-18 124.9 9.8 78 139-216 13-95 (98)
192 1x4g_A Nucleolysin TIAR; struc 99.5 3.4E-14 1.2E-18 128.4 9.4 77 140-217 24-100 (109)
193 2cpd_A Apobec-1 stimulating pr 99.5 6.3E-14 2.1E-18 124.3 10.9 76 139-217 13-90 (99)
194 3ns6_A Eukaryotic translation 99.5 1.4E-14 4.9E-19 129.4 6.6 77 141-217 6-94 (100)
195 2e5j_A Methenyltetrahydrofolat 99.5 2.8E-14 9.5E-19 126.3 8.4 79 139-217 17-95 (97)
196 1x4c_A Splicing factor, argini 99.5 4.2E-14 1.4E-18 127.8 9.7 77 139-217 13-94 (108)
197 1x5p_A Negative elongation fac 99.5 7.8E-14 2.7E-18 123.4 11.2 80 52-134 11-90 (97)
198 2dgx_A KIAA0430 protein; RRM d 99.5 5.5E-14 1.9E-18 124.4 10.2 80 55-134 8-93 (96)
199 2jvo_A Nucleolar protein 3; nu 99.5 2.9E-14 9.8E-19 129.6 8.5 81 50-133 25-105 (108)
200 1wi8_A EIF-4B, eukaryotic tran 99.5 4.4E-14 1.5E-18 126.4 9.6 78 139-218 13-96 (104)
201 1nu4_A U1A RNA binding domain; 99.5 3.4E-14 1.2E-18 125.0 8.7 81 139-219 6-92 (97)
202 3zzy_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 133.8 9.5 77 141-217 28-107 (130)
203 2fc9_A NCL protein; structure 99.5 4.4E-14 1.5E-18 125.6 9.3 80 138-217 12-92 (101)
204 3ucg_A Polyadenylate-binding p 99.5 3.5E-14 1.2E-18 122.8 8.5 76 140-216 5-85 (89)
205 2fc8_A NCL protein; structure 99.5 6.8E-14 2.3E-18 124.4 10.4 82 137-218 11-94 (102)
206 2a3j_A U1 small nuclear ribonu 99.5 4.3E-14 1.5E-18 132.8 9.6 81 139-219 27-113 (127)
207 2lea_A Serine/arginine-rich sp 99.5 1.9E-14 6.5E-19 136.0 7.2 88 47-134 38-130 (135)
208 3ucg_A Polyadenylate-binding p 99.5 3.7E-14 1.3E-18 122.7 8.5 76 55-131 5-85 (89)
209 2i2y_A Fusion protein consists 99.5 5.3E-14 1.8E-18 134.2 10.2 82 51-132 68-149 (150)
210 2cqh_A IGF-II mRNA-binding pro 99.5 2.7E-14 9.4E-19 125.0 7.6 78 139-218 6-85 (93)
211 2dng_A Eukaryotic translation 99.5 6.5E-14 2.2E-18 125.1 10.1 78 138-217 12-94 (103)
212 2kxn_B Transformer-2 protein h 99.5 3.8E-14 1.3E-18 133.0 9.0 79 139-217 44-127 (129)
213 2cpi_A CCR4-NOT transcription 99.5 2.7E-14 9.2E-19 129.9 7.7 81 52-132 11-102 (111)
214 3ulh_A THO complex subunit 4; 99.5 8.3E-14 2.8E-18 124.9 10.8 76 139-214 27-106 (107)
215 2nlw_A Eukaryotic translation 99.5 5E-14 1.7E-18 126.8 9.4 80 52-131 11-100 (105)
216 2krb_A Eukaryotic translation 99.5 3.8E-14 1.3E-18 121.3 8.2 70 56-125 1-80 (81)
217 2cqg_A TDP-43, TAR DNA-binding 99.5 9.4E-14 3.2E-18 123.9 11.0 82 51-134 10-96 (103)
218 2jwn_A Embryonic polyadenylate 99.5 1.3E-14 4.5E-19 133.7 5.6 77 140-217 35-116 (124)
219 2cqd_A RNA-binding region cont 99.5 4.6E-14 1.6E-18 128.8 9.1 80 137-217 13-97 (116)
220 2cqp_A RNA-binding protein 12; 99.5 2.1E-14 7.2E-19 126.8 6.6 80 52-131 11-95 (98)
221 1h2v_Z 20 kDa nuclear CAP bind 99.5 5.8E-14 2E-18 134.7 10.2 82 52-133 35-121 (156)
222 1h2v_Z 20 kDa nuclear CAP bind 99.5 7.2E-14 2.5E-18 134.1 10.7 81 139-219 37-122 (156)
223 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8E-14 2.7E-18 130.4 10.7 77 52-128 59-140 (140)
224 2ek1_A RNA-binding protein 12; 99.5 4.4E-14 1.5E-18 123.9 8.4 76 140-215 14-94 (95)
225 2fy1_A RNA-binding motif prote 99.5 4.9E-14 1.7E-18 129.5 9.1 79 139-217 5-87 (116)
226 2ek1_A RNA-binding protein 12; 99.5 1.5E-14 5.1E-19 126.9 5.2 79 52-130 11-94 (95)
227 2jvr_A Nucleolar protein 3; RN 99.5 3.4E-14 1.2E-18 130.5 7.7 78 54-131 26-105 (111)
228 2cpx_A Hypothetical protein FL 99.5 4.1E-14 1.4E-18 128.5 8.2 80 139-218 23-107 (115)
229 2kt5_A RNA and export factor-b 99.5 9.4E-14 3.2E-18 128.3 10.5 83 52-134 31-117 (124)
230 2kn4_A Immunoglobulin G-bindin 99.5 9.7E-14 3.3E-18 133.0 11.0 83 52-134 66-153 (158)
231 2kvi_A Nuclear polyadenylated 99.5 3.9E-14 1.3E-18 125.3 7.6 77 139-218 8-85 (96)
232 2div_A TRNA selenocysteine ass 99.5 4.5E-14 1.5E-18 124.9 8.0 79 139-217 7-95 (99)
233 2dgw_A Probable RNA-binding pr 99.5 5.8E-14 2E-18 122.5 8.5 79 52-132 6-88 (91)
234 2dhg_A TRNA selenocysteine ass 99.5 3.4E-14 1.2E-18 126.8 7.2 81 139-219 7-93 (104)
235 3ex7_B RNA-binding protein 8A; 99.5 5E-14 1.7E-18 130.2 8.4 80 139-218 20-104 (126)
236 3s7r_A Heterogeneous nuclear r 99.5 5.2E-14 1.8E-18 121.6 8.0 76 52-128 7-87 (87)
237 2hvz_A Splicing factor, argini 99.5 2.3E-14 7.9E-19 127.4 5.9 76 142-217 1-76 (101)
238 1whx_A Hypothetical protein ri 99.5 6.1E-14 2.1E-18 127.9 8.8 76 140-216 9-84 (111)
239 2nlw_A Eukaryotic translation 99.5 6.7E-14 2.3E-18 126.1 8.8 78 139-216 13-100 (105)
240 1x4b_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 128.7 7.9 82 136-218 22-108 (116)
241 2cq4_A RNA binding motif prote 99.5 2.2E-14 7.5E-19 130.5 5.6 79 53-132 22-105 (114)
242 2rs2_A Musashi-1, RNA-binding 99.5 6E-14 2E-18 127.5 8.4 81 52-133 21-106 (109)
243 1wg5_A Heterogeneous nuclear r 99.5 1.1E-13 3.6E-18 124.5 9.9 80 52-132 11-95 (104)
244 2kt5_A RNA and export factor-b 99.5 2E-13 6.8E-18 126.1 12.0 79 139-217 33-115 (124)
245 3n9u_C Cleavage and polyadenyl 99.5 8.7E-14 3E-18 134.9 9.9 80 141-220 55-141 (156)
246 3n9u_C Cleavage and polyadenyl 99.5 4.8E-14 1.6E-18 136.7 7.9 77 55-131 54-137 (156)
247 2dh8_A DAZ-associated protein 99.5 5.3E-14 1.8E-18 125.9 7.6 80 138-218 13-97 (105)
248 3lqv_A PRE-mRNA branch site pr 99.5 9.2E-14 3.2E-18 126.4 9.2 79 140-218 7-87 (115)
249 2e44_A Insulin-like growth fac 99.5 1.5E-13 5.2E-18 120.8 10.2 79 54-132 13-93 (96)
250 3s7r_A Heterogeneous nuclear r 99.5 1.5E-13 5.1E-18 118.7 9.9 75 138-213 8-87 (87)
251 1x5p_A Negative elongation fac 99.5 1.9E-13 6.4E-18 120.9 10.7 76 139-217 13-88 (97)
252 1s79_A Lupus LA protein; RRM, 99.5 7.3E-14 2.5E-18 126.3 8.1 77 53-130 8-88 (103)
253 1sjr_A Polypyrimidine tract-bi 99.5 7.8E-14 2.7E-18 136.7 8.7 77 141-217 46-125 (164)
254 1fj7_A Nucleolin RBD1, protein 99.5 3.9E-14 1.3E-18 126.0 5.9 80 53-133 14-97 (101)
255 1s79_A Lupus LA protein; RRM, 99.5 8.3E-14 2.8E-18 125.9 8.1 80 139-219 9-92 (103)
256 1wg1_A KIAA1579 protein, homol 99.5 1.1E-13 3.9E-18 120.4 8.7 75 140-216 4-78 (88)
257 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-13 6.2E-18 134.0 11.1 82 53-134 43-127 (164)
258 1x5o_A RNA binding motif, sing 99.5 2E-13 6.8E-18 124.0 10.7 78 139-216 23-112 (114)
259 2ki2_A SS-DNA binding protein 99.5 2.4E-14 8.2E-19 124.5 4.3 76 57-133 2-82 (90)
260 2cq2_A Hypothetical protein LO 99.5 1E-13 3.5E-18 128.2 8.7 79 52-131 21-106 (114)
261 1wg1_A KIAA1579 protein, homol 99.5 4.7E-14 1.6E-18 122.8 6.1 76 54-131 3-78 (88)
262 2rs2_A Musashi-1, RNA-binding 99.5 1.1E-13 3.6E-18 125.8 8.5 80 138-218 22-106 (109)
263 2e44_A Insulin-like growth fac 99.5 2.4E-13 8.2E-18 119.5 10.2 78 140-217 14-93 (96)
264 2mss_A Protein (musashi1); RNA 99.5 8.2E-14 2.8E-18 117.0 6.9 70 143-213 1-75 (75)
265 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.8E-13 9.5E-18 126.7 11.2 75 139-213 61-140 (140)
266 2mss_A Protein (musashi1); RNA 99.4 6.2E-14 2.1E-18 117.8 6.0 70 58-128 1-75 (75)
267 2m2b_A RNA-binding protein 10; 99.4 4.4E-14 1.5E-18 132.2 5.7 79 138-217 20-109 (131)
268 1x4f_A Matrin 3; structural ge 99.4 7.8E-14 2.7E-18 128.6 7.2 78 139-217 23-103 (112)
269 2dgw_A Probable RNA-binding pr 99.4 2.1E-13 7.3E-18 118.9 9.6 77 139-217 8-88 (91)
270 2cpy_A RNA-binding protein 12; 99.4 1.4E-13 4.6E-18 125.8 8.7 82 139-221 13-99 (114)
271 2dis_A Unnamed protein product 99.4 1.2E-13 4.1E-18 124.3 8.2 79 140-218 7-94 (109)
272 1x4e_A RNA binding motif, sing 99.4 4.1E-14 1.4E-18 121.7 4.9 76 140-215 4-84 (85)
273 2diu_A KIAA0430 protein; struc 99.4 1.9E-13 6.4E-18 122.1 9.2 76 54-134 6-87 (96)
274 2e5i_A Heterogeneous nuclear r 99.4 3E-13 1E-17 126.8 11.0 74 143-217 27-103 (124)
275 3zzy_A Polypyrimidine tract-bi 99.4 1.3E-13 4.3E-18 130.4 8.5 78 56-133 28-108 (130)
276 2ki2_A SS-DNA binding protein 99.4 4.1E-14 1.4E-18 123.0 4.6 75 142-217 2-81 (90)
277 2e5g_A U6 snRNA-specific termi 99.4 3.9E-13 1.3E-17 118.2 10.8 81 53-134 5-85 (94)
278 2cqg_A TDP-43, TAR DNA-binding 99.4 4.3E-13 1.5E-17 119.6 11.3 77 139-217 13-94 (103)
279 1x4b_A Heterogeneous nuclear r 99.4 1.2E-13 3.9E-18 126.1 7.7 80 54-134 25-109 (116)
280 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.8E-13 6.1E-18 133.0 9.4 85 49-133 65-154 (165)
281 2j76_E EIF-4B, EIF4B, eukaryot 99.4 8.4E-14 2.9E-18 124.2 6.4 77 139-217 17-99 (100)
282 1fj7_A Nucleolin RBD1, protein 99.4 5.8E-14 2E-18 124.8 5.2 78 140-218 16-97 (101)
283 1wel_A RNA-binding protein 12; 99.4 6.4E-14 2.2E-18 129.7 5.6 80 140-220 24-108 (124)
284 2db1_A Heterogeneous nuclear r 99.4 2.5E-13 8.5E-18 125.2 9.5 81 139-220 15-102 (118)
285 1uaw_A Mouse-musashi-1; RNP-ty 99.4 6E-14 2.1E-18 118.1 4.9 71 57-128 1-76 (77)
286 2krb_A Eukaryotic translation 99.4 8.4E-14 2.9E-18 119.2 5.8 69 142-210 2-80 (81)
287 2jwn_A Embryonic polyadenylate 99.4 2.2E-13 7.4E-18 125.5 8.5 77 55-132 35-116 (124)
288 2hgl_A HNRPF protein, heteroge 99.4 2.2E-13 7.4E-18 129.6 8.5 80 140-220 43-129 (136)
289 2e5i_A Heterogeneous nuclear r 99.4 6.5E-13 2.2E-17 124.5 11.6 80 53-133 20-104 (124)
290 3d2w_A TAR DNA-binding protein 99.4 1.8E-13 6.3E-18 120.0 7.3 78 52-133 7-86 (89)
291 3d2w_A TAR DNA-binding protein 99.4 4.8E-13 1.6E-17 117.4 9.9 76 139-218 9-86 (89)
292 3egn_A RNA-binding protein 40; 99.4 2.6E-13 8.9E-18 128.3 8.8 81 53-133 42-132 (143)
293 1wel_A RNA-binding protein 12; 99.4 8.4E-14 2.9E-18 128.9 5.2 78 53-131 22-104 (124)
294 1wg5_A Heterogeneous nuclear r 99.4 3.7E-13 1.3E-17 121.0 9.2 78 139-217 13-95 (104)
295 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.2E-13 4.3E-18 116.2 5.6 71 142-213 1-76 (77)
296 3egn_A RNA-binding protein 40; 99.4 2.6E-13 8.8E-18 128.4 8.4 81 139-219 43-133 (143)
297 2lcw_A RNA-binding protein FUS 99.1 1.6E-14 5.6E-19 131.9 0.0 83 52-134 3-98 (116)
298 2cpy_A RNA-binding protein 12; 99.4 1E-13 3.6E-18 126.6 5.3 80 52-132 11-95 (114)
299 3tyt_A Heterogeneous nuclear r 99.4 5E-13 1.7E-17 134.8 10.7 75 141-215 4-79 (205)
300 2hzc_A Splicing factor U2AF 65 99.4 3.3E-13 1.1E-17 116.2 7.9 72 54-127 4-86 (87)
301 2cq2_A Hypothetical protein LO 99.4 4E-13 1.4E-17 124.2 9.0 76 140-216 24-106 (114)
302 2xs2_A Deleted in azoospermia- 99.4 7.3E-14 2.5E-18 124.4 3.7 82 51-134 4-89 (102)
303 1wf0_A TDP-43, TAR DNA-binding 99.4 1.6E-13 5.4E-18 119.2 5.6 79 54-134 3-81 (88)
304 2e5g_A U6 snRNA-specific termi 99.4 4E-13 1.4E-17 118.1 8.2 77 140-217 7-83 (94)
305 1wez_A HnRNP H', FTP-3, hetero 99.4 2.9E-13 9.9E-18 121.8 7.3 79 52-132 11-93 (102)
306 2lmi_A GRSF-1, G-rich sequence 99.4 2.9E-13 9.8E-18 122.3 7.2 83 139-222 9-98 (107)
307 3beg_B Splicing factor, argini 99.4 3.9E-13 1.3E-17 123.2 8.0 74 140-215 15-93 (115)
308 3beg_B Splicing factor, argini 99.4 4E-13 1.4E-17 123.1 8.0 70 54-125 14-83 (115)
309 3q2s_C Cleavage and polyadenyl 99.4 3.5E-13 1.2E-17 138.4 8.1 80 141-220 68-154 (229)
310 2db1_A Heterogeneous nuclear r 99.4 2E-13 6.9E-18 125.8 5.6 77 53-130 14-97 (118)
311 2diu_A KIAA0430 protein; struc 99.4 6.8E-13 2.3E-17 118.5 8.6 70 143-217 11-85 (96)
312 1iqt_A AUF1, heterogeneous nuc 99.4 2E-13 6.7E-18 114.5 4.9 70 58-128 1-75 (75)
313 2lcw_A RNA-binding protein FUS 99.1 3.8E-14 1.3E-18 129.4 0.0 81 139-219 5-98 (116)
314 2bz2_A Negative elongation fac 99.4 7.5E-13 2.6E-17 122.9 8.4 79 52-133 35-113 (121)
315 2f3j_A RNA and export factor b 99.4 8.5E-13 2.9E-17 130.4 9.2 79 53-131 85-167 (177)
316 1fje_B Nucleolin RBD12, protei 99.4 5.5E-13 1.9E-17 128.5 7.5 80 52-131 95-174 (175)
317 3q2s_C Cleavage and polyadenyl 99.4 3.7E-13 1.3E-17 138.3 6.6 76 55-130 67-149 (229)
318 1iqt_A AUF1, heterogeneous nuc 99.4 2.8E-13 9.6E-18 113.6 4.7 70 143-213 1-75 (75)
319 2dnn_A RNA-binding protein 12; 99.4 1.2E-12 4.2E-17 119.7 9.3 75 141-217 16-94 (109)
320 1wez_A HnRNP H', FTP-3, hetero 99.4 5.5E-13 1.9E-17 120.0 6.8 77 139-217 13-93 (102)
321 2lmi_A GRSF-1, G-rich sequence 99.4 3.6E-13 1.2E-17 121.6 5.5 78 53-131 8-92 (107)
322 2hgl_A HNRPF protein, heteroge 99.4 3.3E-13 1.1E-17 128.3 5.2 78 52-130 40-124 (136)
323 2hzc_A Splicing factor U2AF 65 99.4 1.6E-12 5.4E-17 111.9 9.0 72 139-212 4-86 (87)
324 3md3_A Nuclear and cytoplasmic 99.4 1.6E-12 5.6E-17 123.0 9.9 78 52-129 83-165 (166)
325 1fxl_A Paraneoplastic encephal 99.4 2.3E-12 7.7E-17 122.2 10.7 77 141-217 2-83 (167)
326 4f02_A Polyadenylate-binding p 99.4 2.4E-12 8.2E-17 129.5 11.2 81 139-219 13-98 (213)
327 1wf0_A TDP-43, TAR DNA-binding 99.4 4.3E-13 1.5E-17 116.4 4.9 76 140-217 4-79 (88)
328 2qfj_A FBP-interacting repress 99.4 2.2E-12 7.5E-17 128.1 10.7 81 54-134 123-208 (216)
329 2voo_A Lupus LA protein; RNA-b 99.3 3E-12 1E-16 128.1 11.7 116 102-218 63-189 (193)
330 2bz2_A Negative elongation fac 99.3 1.3E-12 4.4E-17 121.3 8.3 77 140-219 38-114 (121)
331 1b7f_A Protein (SXL-lethal pro 99.3 2.3E-12 7.7E-17 122.8 10.2 77 141-217 3-84 (168)
332 2hgn_A Heterogeneous nuclear r 99.3 2.9E-13 1E-17 129.1 3.7 120 94-218 2-125 (139)
333 2xs2_A Deleted in azoospermia- 99.3 8.3E-13 2.8E-17 117.5 6.4 79 138-218 6-88 (102)
334 2hgn_A Heterogeneous nuclear r 99.3 6.7E-13 2.3E-17 126.6 5.1 80 52-133 42-125 (139)
335 2dnn_A RNA-binding protein 12; 99.3 9.6E-13 3.3E-17 120.4 5.9 74 55-130 15-92 (109)
336 2dha_A FLJ20171 protein; RRM d 99.3 1.1E-12 3.7E-17 122.6 6.4 81 141-222 23-111 (123)
337 2f3j_A RNA and export factor b 99.3 2.8E-12 9.5E-17 126.8 9.6 78 140-217 87-168 (177)
338 2yh0_A Splicing factor U2AF 65 99.3 2.8E-12 9.4E-17 125.6 9.4 81 53-133 111-196 (198)
339 3u1l_A PRE-mRNA-splicing facto 99.3 1.7E-12 5.7E-17 134.6 8.2 82 52-134 130-232 (240)
340 2cjk_A Nuclear polyadenylated 99.3 1.5E-12 5.2E-17 124.1 7.2 77 55-132 86-167 (167)
341 2hgm_A HNRPF protein, heteroge 99.3 1.6E-12 5.6E-17 122.1 6.7 78 52-131 38-121 (126)
342 2dnl_A Cytoplasmic polyadenyla 99.3 2.6E-12 8.8E-17 117.3 7.8 73 53-128 5-85 (114)
343 2dit_A HIV TAT specific factor 99.3 6.5E-12 2.2E-16 114.4 10.1 82 52-133 11-104 (112)
344 2g4b_A Splicing factor U2AF 65 99.3 3.5E-12 1.2E-16 122.2 8.5 75 54-128 92-171 (172)
345 3u1l_A PRE-mRNA-splicing facto 99.3 6E-12 2.1E-16 130.4 10.4 103 116-219 109-232 (240)
346 2dha_A FLJ20171 protein; RRM d 99.3 1.2E-12 3.9E-17 122.5 4.5 76 54-130 21-104 (123)
347 1qm9_A Polypyrimidine tract-bi 99.3 1E-11 3.6E-16 122.3 11.5 79 53-131 117-197 (198)
348 3nmr_A Cugbp ELAV-like family 99.3 6.3E-12 2.2E-16 120.2 9.5 77 52-128 91-174 (175)
349 1l3k_A Heterogeneous nuclear r 99.3 8.1E-12 2.8E-16 122.1 10.4 79 138-217 10-93 (196)
350 2adc_A Polypyrimidine tract-bi 99.3 8.6E-12 2.9E-16 126.8 10.3 79 53-131 148-228 (229)
351 3pgw_S U1-70K; protein-RNA com 99.3 5.7E-12 1.9E-16 141.1 9.5 81 53-133 99-184 (437)
352 2hgm_A HNRPF protein, heteroge 99.3 3.1E-12 1.1E-16 120.2 6.1 77 139-217 40-122 (126)
353 3sde_A Paraspeckle component 1 99.2 1.7E-11 5.8E-16 127.2 10.8 76 139-215 20-95 (261)
354 2dnl_A Cytoplasmic polyadenyla 99.2 1.2E-11 4.1E-16 112.9 8.5 76 140-218 7-90 (114)
355 2dit_A HIV TAT specific factor 99.2 2.6E-11 8.9E-16 110.4 10.6 79 139-217 13-103 (112)
356 2pe8_A Splicing factor 45; RRM 99.2 2.4E-11 8.1E-16 110.3 10.0 78 139-216 6-94 (105)
357 2pe8_A Splicing factor 45; RRM 99.2 1.3E-11 4.6E-16 112.0 8.3 78 53-130 5-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.2 1.2E-11 3.9E-16 116.6 6.5 79 142-220 3-100 (136)
359 2voo_A Lupus LA protein; RNA-b 99.2 4.7E-11 1.6E-15 119.5 8.3 75 55-130 108-186 (193)
360 3v4m_A Splicing factor U2AF 65 99.1 5.7E-11 1.9E-15 107.8 7.3 78 53-130 2-96 (105)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.8E-10 9.5E-15 102.6 11.2 66 66-133 27-92 (100)
362 3v4m_A Splicing factor U2AF 65 99.1 1.4E-10 4.8E-15 105.2 9.0 77 140-216 4-97 (105)
363 2j8a_A Histone-lysine N-methyl 99.1 3.5E-11 1.2E-15 113.3 4.6 72 57-128 3-93 (136)
364 3tht_A Alkylated DNA repair pr 99.1 1.6E-10 5.6E-15 125.6 8.5 76 52-128 14-96 (345)
365 1jmt_A Splicing factor U2AF 35 99.1 7.2E-11 2.5E-15 106.8 4.7 68 146-213 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.1 2.8E-10 9.5E-15 123.7 9.8 75 139-214 16-97 (345)
367 2d9o_A DNAJ (HSP40) homolog, s 99.0 3.8E-10 1.3E-14 101.8 8.3 65 151-217 27-91 (100)
368 1jmt_A Splicing factor U2AF 35 99.0 1.3E-10 4.4E-15 105.1 3.6 68 61-128 20-103 (104)
369 3ue2_A Poly(U)-binding-splicin 99.0 1.1E-09 3.6E-14 101.7 8.8 77 140-216 19-109 (118)
370 3s6e_A RNA-binding protein 39; 99.0 1.5E-09 5.3E-14 100.0 9.1 78 140-217 6-94 (114)
371 3ue2_A Poly(U)-binding-splicin 98.9 1.1E-09 3.8E-14 101.5 7.3 76 54-129 18-107 (118)
372 1uw4_A UPF3X; nonsense mediate 98.9 2.6E-09 8.7E-14 94.9 8.3 84 593-678 2-88 (91)
373 3s6e_A RNA-binding protein 39; 98.9 2.5E-09 8.4E-14 98.7 7.9 77 53-129 4-91 (114)
374 1owx_A Lupus LA protein, SS-B, 98.8 2E-08 6.7E-13 93.7 9.4 80 142-222 19-102 (121)
375 2l08_A Regulator of nonsense t 98.8 3.5E-09 1.2E-13 94.8 4.1 84 593-678 10-96 (97)
376 2dnr_A Synaptojanin-1; RRM dom 98.7 2.6E-08 8.8E-13 88.2 8.8 74 139-216 5-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.5 1.8E-07 6.2E-12 83.3 7.1 73 139-215 13-94 (95)
378 1owx_A Lupus LA protein, SS-B, 98.4 7.9E-07 2.7E-11 82.9 8.6 74 53-127 15-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.4 5.5E-07 1.9E-11 79.8 6.9 74 53-130 4-85 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 6.5E-07 2.2E-11 90.3 7.5 65 152-216 140-213 (222)
381 3dxb_A Thioredoxin N-terminall 98.2 1.5E-06 5E-11 87.7 7.5 74 56-129 124-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.1 2.9E-06 9.9E-11 75.6 5.3 74 52-129 11-93 (95)
383 2l9w_A U4/U6 snRNA-associated- 97.9 4.5E-05 1.5E-09 69.6 8.9 74 140-214 20-98 (117)
384 2l9w_A U4/U6 snRNA-associated- 97.6 0.00013 4.3E-09 66.6 7.5 70 55-125 20-94 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.4 0.00085 2.9E-08 60.6 10.3 88 55-154 7-99 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.1 0.0015 5E-08 59.0 8.8 78 141-222 8-90 (104)
387 1wey_A Calcipressin 1; structu 96.7 0.002 7E-08 58.2 5.8 76 141-217 5-85 (104)
388 1wey_A Calcipressin 1; structu 96.4 0.0026 9E-08 57.5 4.8 74 57-131 6-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.1 0.022 7.7E-07 52.7 9.0 76 139-217 22-98 (119)
390 1whv_A Poly(A)-specific ribonu 95.8 0.032 1.1E-06 49.9 8.3 55 56-114 16-70 (100)
391 1uw4_A UPF3X; nonsense mediate 95.4 0.071 2.4E-06 47.1 9.1 72 143-214 3-86 (91)
392 1wwh_A Nucleoporin 35, nucleop 93.9 0.15 5.2E-06 47.1 7.8 67 56-125 24-91 (119)
393 1whv_A Poly(A)-specific ribonu 93.6 0.098 3.4E-06 46.8 5.8 53 143-199 18-70 (100)
394 3pq1_A Poly(A) RNA polymerase; 93.5 0.036 1.2E-06 62.4 3.4 56 140-196 52-107 (464)
395 3pq1_A Poly(A) RNA polymerase; 93.2 0.034 1.2E-06 62.6 2.7 55 56-111 53-107 (464)
396 3ctr_A Poly(A)-specific ribonu 93.1 0.067 2.3E-06 47.9 3.8 53 143-199 8-60 (101)
397 3ctr_A Poly(A)-specific ribonu 93.0 0.078 2.7E-06 47.5 4.2 54 57-114 7-60 (101)
398 3p3d_A Nucleoporin 53; structu 92.6 0.2 6.7E-06 47.1 6.4 73 141-215 7-98 (132)
399 2l08_A Regulator of nonsense t 91.7 0.16 5.3E-06 45.4 4.4 68 54-121 7-81 (97)
400 3p3d_A Nucleoporin 53; structu 83.5 0.79 2.7E-05 43.0 3.7 70 57-128 8-96 (132)
401 3d45_A Poly(A)-specific ribonu 74.9 6.3 0.00021 44.7 8.3 55 57-115 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 63.7 12 0.00041 42.4 7.5 55 142-200 441-495 (507)
403 3lpe_A Putative transcription 32.9 1.8E+02 0.0061 25.0 8.3 34 82-115 39-72 (92)
404 2g0c_A ATP-dependent RNA helic 25.8 44 0.0015 27.3 3.0 58 153-214 13-75 (76)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.1e-30 Score=263.65 Aligned_cols=166 Identities=17% Similarity=0.320 Sum_probs=147.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..|.+||||+|||+++||++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 357899999999999999999999999999999984 578999999999999999999999999999999999998
Q ss_pred cCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 128 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 128 a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
+..... .......+|||+|||.++++++|+++|+.||.|++|++ ...++|||||+|.+.++|++||+.|||..|.
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 765432 22234569999999999999999999999999999887 3446899999999999999999999999999
Q ss_pred CeEEEEEeccCchhHH
Q 004289 205 GKQIKLEPSHLRGLRK 220 (763)
Q Consensus 205 Gr~LkVe~a~~k~~rr 220 (763)
|++|+|++++++.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999987654
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=241.75 Aligned_cols=157 Identities=16% Similarity=0.280 Sum_probs=143.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
|+|||+|||.++++++|+++|++||+|.++++ .++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 79999999999999999999999999999985 46689999999999999999999999999999999999987765
Q ss_pred CCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 133 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 133 ~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
.. ......+|||+|||.++++++|+++|+.||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 42 2345669999999999999999999999999999876 4566889999999999999999999999999999
Q ss_pred EEEEeccC
Q 004289 208 IKLEPSHL 215 (763)
Q Consensus 208 LkVe~a~~ 215 (763)
|+|.|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999874
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=6.2e-29 Score=238.00 Aligned_cols=155 Identities=23% Similarity=0.419 Sum_probs=142.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
++++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999984 56688999999999999999999999999999999999998
Q ss_pred CCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
++... ....+|||+|||..+++++|+++|++||.|..|++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGES----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSST----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCccc----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 76532 34569999999999999999999999999999876 4455799999999999999999999999998
Q ss_pred C--eEEEEEec
Q 004289 205 G--KQIKLEPS 213 (763)
Q Consensus 205 G--r~LkVe~a 213 (763)
| ++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=7.2e-29 Score=236.49 Aligned_cols=155 Identities=23% Similarity=0.408 Sum_probs=141.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
++++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999884 67788999999999999999999999999999999999987
Q ss_pred CCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
++.. .....+|||+|||..+++++|+++|++||.|.++++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6543 334568999999999999999999999999999887 3445899999999999999999999999999
Q ss_pred Ce--EEEEEec
Q 004289 205 GK--QIKLEPS 213 (763)
Q Consensus 205 Gr--~LkVe~a 213 (763)
|+ +|+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 96 4888885
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=5.8e-29 Score=244.42 Aligned_cols=169 Identities=14% Similarity=0.288 Sum_probs=140.9
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 345567899999999999999999999999999999884 567899999999999999999975 88999999999
Q ss_pred ccccCCCCCCCc--cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHH
Q 004289 125 IHYSIPKDNPSE--KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 197 (763)
Q Consensus 125 V~~a~pk~~~~~--~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~ 197 (763)
|.++.++..... ......+|||+|||.++++++|+++|+.||.|+.|++ ++.++|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 999877654322 2234579999999999999999999999999999877 455689999999999999999986
Q ss_pred hCCCeeCCeEEEEEeccCchhHH
Q 004289 198 LNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 198 LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
++..|.|+.|+|.++.++.+.+
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp -SCCEETTEECEEEECC------
T ss_pred -CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999887553
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=8.6e-29 Score=246.85 Aligned_cols=164 Identities=15% Similarity=0.295 Sum_probs=144.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45689999999999999999999999999999986 5678999999999999999999999999999999999887
Q ss_pred CCCCCCC-------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHH
Q 004289 129 IPKDNPS-------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALR 196 (763)
Q Consensus 129 ~pk~~~~-------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~ 196 (763)
..+.... .......+|||+|||.++++++|+++|+.||.|++|++ ++..+|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6543211 11234569999999999999999999999999999887 34558999999999999999999
Q ss_pred HhCCCeeCCeEEEEEeccCch
Q 004289 197 ELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 197 ~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.|||..|.|++|+|.++.++.
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999998764
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.7e-28 Score=250.33 Aligned_cols=165 Identities=20% Similarity=0.226 Sum_probs=148.3
Q ss_pred CCCCCcEEEecCCCC-CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 52 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 52 ~e~psRtLfVgNLP~-~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
...++++|||+|||+ ++++++|+++|++||+|..|++....+|||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 446789999999999 9999999999999999999998666689999999999999999999999999999999999876
Q ss_pred CCCCCcc-------------------------------ccccceeEEeccCCCCCHHHHHHHhcccC-ceeEeeecCCcc
Q 004289 131 KDNPSEK-------------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRETPQKI 178 (763)
Q Consensus 131 k~~~~~~-------------------------------~~~~~tLfVgNLp~svTeedLrelFs~fG-eVkeIrit~~sk 178 (763)
+.....+ .....+|||+|||.++++++|+++|+.|| +|.+|++.+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 189 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 189 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC
Confidence 5221110 11246899999999999999999999999 999999977789
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEeccCc
Q 004289 179 HQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHLR 216 (763)
Q Consensus 179 G~aFVeF~d~esA~kAL~~LnG~~I~-Gr~LkVe~a~~k 216 (763)
++|||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999999 999999999874
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.9e-28 Score=255.83 Aligned_cols=163 Identities=23% Similarity=0.365 Sum_probs=146.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHH----HHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~----~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
+..++++|||+|||.++++++|+ ++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45789999999999999999977 89999999999985 6789999999999999999999999999999999999
Q ss_pred cccCCCCCCC----------------------------------------------------------------------
Q 004289 126 HYSIPKDNPS---------------------------------------------------------------------- 135 (763)
Q Consensus 126 ~~a~pk~~~~---------------------------------------------------------------------- 135 (763)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9987654200
Q ss_pred -------------------------------------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcc
Q 004289 136 -------------------------------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKI 178 (763)
Q Consensus 136 -------------------------------------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~sk 178 (763)
.......+|||+|||.++++++|+++|++||.|++|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 1112346899999999999999999999999999999977778
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEEecc
Q 004289 179 HQKYIEFYDTRAAEAALRELNSRYIA-GKQIKLEPSH 214 (763)
Q Consensus 179 G~aFVeF~d~esA~kAL~~LnG~~I~-Gr~LkVe~a~ 214 (763)
|||||+|.+.++|.+|++.|||..|. |++|+|+|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999987
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2e-28 Score=237.20 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=145.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEE----EeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTF----YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv----~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
...+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|+ +|++..+.|++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 45678999999999999999999999999865431 135889999999999999999999 5999999999999999
Q ss_pred cCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 128 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 128 a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
+.++... ......+|||+|||.++++++|+++|+.||+|..+..++..+|||||+|.+.++|.+|++.|||..|.|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9876543 23456799999999999999999999999999998667788999999999999999999999999999999
Q ss_pred EEEEeccCc
Q 004289 208 IKLEPSHLR 216 (763)
Q Consensus 208 LkVe~a~~k 216 (763)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999876
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.4e-28 Score=235.21 Aligned_cols=155 Identities=15% Similarity=0.270 Sum_probs=140.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhc----C-------CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskf----G-------~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
+++++|||+|||+++++++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357999999999999999999999999 7 8888877 678999999999999999999 89999999999
Q ss_pred ccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHH
Q 004289 123 LDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRE 197 (763)
Q Consensus 123 L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~ 197 (763)
|+|.++.+.... ....+|||+|||.++++++|+++|++||.|..|++ ++.++|+|||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999987654332 33679999999999999999999999999999887 455689999999999999999999
Q ss_pred hCCCeeCCeEEEEEecc
Q 004289 198 LNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 198 LnG~~I~Gr~LkVe~a~ 214 (763)
|||..|.|++|+|++|.
T Consensus 156 l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred cCCCEECCeEEEEEeCC
Confidence 99999999999999973
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=9.8e-29 Score=236.80 Aligned_cols=155 Identities=17% Similarity=0.324 Sum_probs=140.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999984 577899999999999999999984 568999999999886
Q ss_pred CCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
++. ......+|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++ +++..|.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 643 2234569999999999999999999999999999886 35568999999999999999998 8999999
Q ss_pred CeEEEEEeccCc
Q 004289 205 GKQIKLEPSHLR 216 (763)
Q Consensus 205 Gr~LkVe~a~~k 216 (763)
|++|+|.++.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999986
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=3.4e-28 Score=239.31 Aligned_cols=161 Identities=15% Similarity=0.251 Sum_probs=142.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhc----C-------CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskf----G-------~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
.+|+|||+|||+++++++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 57999999999999999999999999 6 7787776 778999999999999999999 899999999999
Q ss_pred cccccCCCCCCC----------------ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEE
Q 004289 124 DIHYSIPKDNPS----------------EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKY 182 (763)
Q Consensus 124 ~V~~a~pk~~~~----------------~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aF 182 (763)
+|.++.++.... .......+|||+|||..+++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999987653211 01134569999999999999999999999999999886 445589999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 183 IEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 183 VeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
|+|.+.++|.+|++.|||..|.|++|+|++++++.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999875
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7.1e-28 Score=231.74 Aligned_cols=157 Identities=16% Similarity=0.316 Sum_probs=137.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CC--CcccEEEEEeCCHHHHHHHHHHhhhcccC---CCccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----AS--KHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 124 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tg--kskGfAFV~F~d~e~AekAl~~Lng~~l~---Gr~L~ 124 (763)
.+++|||+|||+++++++|+++|++||+|..|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999984 22 78999999999999999999999998776 57777
Q ss_pred ccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 125 IHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 125 V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
+.++.++... .....+|||+|||.++++++|+++|++||.|.+|++ .+.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKNN---AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCCS---CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccccc---cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 7776654432 334669999999999999999999999999999887 344688999999999999999999999
Q ss_pred CeeC---CeEEEEEecc
Q 004289 201 RYIA---GKQIKLEPSH 214 (763)
Q Consensus 201 ~~I~---Gr~LkVe~a~ 214 (763)
..+. +++|+|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8876 4999999974
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.6e-28 Score=241.63 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=145.4
Q ss_pred CcEEEecCCCC-CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCC
Q 004289 56 SRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNP 134 (763)
Q Consensus 56 sRtLfVgNLP~-~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~ 134 (763)
+++|||+|||+ ++++++|+++|++||+|..|++....+|||||+|.+.++|++|++.|++..+.|++|+|.++.++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 58999999999 99999999999999999999986666899999999999999999999999999999999998754321
Q ss_pred Ccc-------------------------------ccccceeEEeccCCCCCHHHHHHHhcccC-ceeEeeecCCcccEEE
Q 004289 135 SEK-------------------------------EINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRETPQKIHQKY 182 (763)
Q Consensus 135 ~~~-------------------------------~~~~~tLfVgNLp~svTeedLrelFs~fG-eVkeIrit~~skG~aF 182 (763)
..+ .....+|||+|||..+++++|+++|+.|| .|.+|++.+..+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~af 162 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 162 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEE
Confidence 110 12256899999999999999999999999 9999999777799999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeC-CeEEEEEeccCc
Q 004289 183 IEFYDTRAAEAALRELNSRYIA-GKQIKLEPSHLR 216 (763)
Q Consensus 183 VeF~d~esA~kAL~~LnG~~I~-Gr~LkVe~a~~k 216 (763)
|+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 163 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 163 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999 999999999864
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=8.4e-28 Score=243.05 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=137.3
Q ss_pred CCcEEEecCCC-CCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC
Q 004289 55 PSRTLLLRKIN-SNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 133 (763)
Q Consensus 55 psRtLfVgNLP-~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~ 133 (763)
++++|||+||| .++++++|+++|++||+|.+|++....+|||||+|.+.++|++|++.|+|+.+.|++|+|.|++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998777799999999999999999999999999999999999864321
Q ss_pred CCc------------c---------------------ccccceeEEeccCCCCCHHHHHHHhcccCce--eEeeecC---
Q 004289 134 PSE------------K---------------------EINQGTLVVFNLDSSVSNDELHHIFGVYGEI--KEIRETP--- 175 (763)
Q Consensus 134 ~~~------------~---------------------~~~~~tLfVgNLp~svTeedLrelFs~fGeV--keIrit~--- 175 (763)
... + ..+..+|||+|||+++++++|+++|++||.| ++|++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123479999999999999999999999999 7888633
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCCCeeCCe----EEEEEec
Q 004289 176 QKIHQKYIEFYDTRAAEAALRELNSRYIAGK----QIKLEPS 213 (763)
Q Consensus 176 ~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr----~LkVe~a 213 (763)
..+|+|||+|.+.++|.+||..|||.+|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3468999999999999999999999999985 5666654
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.4e-27 Score=247.75 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=150.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999998873 6778999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccceeEEeccCCCC-CHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 004289 129 IPKDNPSEKEINQGTLVVFNLDSSV-SNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI 203 (763)
Q Consensus 129 ~pk~~~~~~~~~~~tLfVgNLp~sv-TeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I 203 (763)
.++.... ......+|||+|||.++ ++++|+++|+.||.|.+|++ ++.++|+|||+|.+.++|.+|++.|||..|
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 23456799999999996 99999999999999999876 445689999999999999999999999999
Q ss_pred CCeEEEEEeccCchhHH
Q 004289 204 AGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 204 ~Gr~LkVe~a~~k~~rr 220 (763)
.|++|+|.|+.++..++
T Consensus 252 ~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TTEECEEEECCSSSCHH
T ss_pred CCeEEEEEEecCCCccc
Confidence 99999999999998766
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=6.5e-26 Score=236.89 Aligned_cols=152 Identities=16% Similarity=0.285 Sum_probs=141.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 133 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~ 133 (763)
.++++|||+|||.++++++|+++|++|| |..+++ ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 4678999999999999999999999999 999988 8899999999999999999999999999999999999853
Q ss_pred CCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 004289 134 PSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 208 (763)
Q Consensus 134 ~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~L 208 (763)
...+|||+|||.++++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+|++.|+|..|.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2358999999999999999999999999999875 45568999999999999999999999999999999
Q ss_pred EEEeccCch
Q 004289 209 KLEPSHLRG 217 (763)
Q Consensus 209 kVe~a~~k~ 217 (763)
+|.++.++.
T Consensus 168 ~v~~a~~~~ 176 (284)
T 3smz_A 168 YVHWTDAGQ 176 (284)
T ss_dssp EEEECCGGG
T ss_pred EEEECCCCC
Confidence 999998653
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=4e-26 Score=239.42 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=141.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcC-CeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG-~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||+|||.++++++|+++|++|| +|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999985 35689999999999999999999999999999999999998
Q ss_pred CCCCCCc---cccccceeEEeccCCC-CCHHHHHHHhcccCceeEeeec------CCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 130 PKDNPSE---KEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 130 pk~~~~~---~~~~~~tLfVgNLp~s-vTeedLrelFs~fGeVkeIrit------~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
++..... ......+|||+|||.+ +++++|+++|+.||.|..|++. +.++|||||+|.+.++|.+|+ .||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 7765332 2234569999999999 9999999999999999999873 556899999999999999999 999
Q ss_pred CCeeCCeEEEEEeccCc
Q 004289 200 SRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 200 G~~I~Gr~LkVe~a~~k 216 (763)
|..|.|++|+|.|++++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999976
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.7e-26 Score=237.75 Aligned_cols=156 Identities=22% Similarity=0.354 Sum_probs=141.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
..+.++|||+|||+++|+++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 345689999999999999999999999999999998 67899999999999999999999999999999999999854
Q ss_pred CCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhC-CCeeC---
Q 004289 133 NPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELN-SRYIA--- 204 (763)
Q Consensus 133 ~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~Ln-G~~I~--- 204 (763)
..+|||+|||..+++++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|++.|| +..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 458999999999999999999999999999876 45678999999999999999999994 55555
Q ss_pred CeEEEEEeccCchhH
Q 004289 205 GKQIKLEPSHLRGLR 219 (763)
Q Consensus 205 Gr~LkVe~a~~k~~r 219 (763)
+++|.|.++.+...+
T Consensus 168 ~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 168 PRPVIVEPMEQFDDE 182 (261)
T ss_dssp CCBCEEEECCCEESS
T ss_pred CceEEEeeccccCcc
Confidence 899999999887543
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=2.7e-25 Score=233.09 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=135.6
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
.+..+.+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|+ .+++..+.|++|.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 4446677899999999999999999999999999999985 2235899999999999999999 59999999999999
Q ss_pred cccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccC-ceeEeeec----CCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 126 HYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 126 ~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fG-eVkeIrit----~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
.++ ...+|||+|||.++++++|+++|+.|| .|..|++. +..+|||||+|.+.++|.+|++.|+|
T Consensus 113 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 113 SHL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 885 256899999999999999999999999 99998873 34689999999999999999999999
Q ss_pred CeeCCeEEEEEeccCchh
Q 004289 201 RYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 201 ~~I~Gr~LkVe~a~~k~~ 218 (763)
..|.|++|+|.++.+...
T Consensus 182 ~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp CEETTEECEEEECCCC--
T ss_pred CEeCCcEEEEEECCCCcc
Confidence 999999999999987653
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=6.4e-20 Score=175.30 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=113.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-hhcccCCCcccccccCCCC------------CCCccccccceeEEeccCCCCCHH
Q 004289 90 SKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKLDIHYSIPKD------------NPSEKEINQGTLVVFNLDSSVSND 156 (763)
Q Consensus 90 gkskGfAFV~F~d~e~AekAl~~L-ng~~l~Gr~L~V~~a~pk~------------~~~~~~~~~~tLfVgNLp~svTee 156 (763)
.+.+|+++|+|.+.++|++|++.+ ++..+.| .+.+.++..+. ..........+|||+|||.+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 9999999 99999876531 112223446799999999999999
Q ss_pred HHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 157 ELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 157 dLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
+|+++|++||.|++|++...++|||||+|.+.++|.+|++.|||..|.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=4.9e-19 Score=169.99 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=103.9
Q ss_pred eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc-------cccccCCCCC--CCccccccceeEEeccCCCCCHHHH
Q 004289 88 RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL-------DIHYSIPKDN--PSEKEINQGTLVVFNLDSSVSNDEL 158 (763)
Q Consensus 88 ~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L-------~V~~a~pk~~--~~~~~~~~~tLfVgNLp~svTeedL 158 (763)
...+++|||||+|.+.++|++|++.+++.......+ .......... .........+|||+|||.++++++|
T Consensus 8 n~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 87 (158)
T 2kn4_A 8 NGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTL 87 (158)
T ss_dssp ECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHH
T ss_pred cCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 445789999999999999999999988754332222 2222111111 1122234679999999999999999
Q ss_pred HHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 159 HHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 159 relFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
+++|+.||+|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 88 ~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 88 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999887 45678999999999999999999999999999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=4.8e-19 Score=162.52 Aligned_cols=103 Identities=12% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.+.+|||+|||++++|++|+++|++||+|.+|++ .+.++|||||+|.+.++|++|++.|+++.|.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3578999999999999999999999999999884 4567999999999999999999999999999999999999876
Q ss_pred CCCCcc----ccccceeEEeccCCCCCHHH
Q 004289 132 DNPSEK----EINQGTLVVFNLDSSVSNDE 157 (763)
Q Consensus 132 ~~~~~~----~~~~~tLfVgNLp~svTeed 157 (763)
...... .....+|||+|||+++|++-
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 553221 22345899999999999863
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=7.4e-17 Score=146.94 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=92.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
..++++|||+|||.++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456899999999999999999999999999999985 567799999999999999999999999999999999999876
Q ss_pred CCCCCccccccceeEEeccCCCCCHHHHHHHhcccCc
Q 004289 131 KDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGE 167 (763)
Q Consensus 131 k~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGe 167 (763)
+... .+++...++++|.++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4322 466777889999999999985
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=140.03 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=70.1
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
.+|||+|||.++|+++|+++|++||+|++|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+|++|
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 48999999999999999999999999999876 466789999999999999999999999999999999999987
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=140.60 Aligned_cols=76 Identities=22% Similarity=0.440 Sum_probs=71.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3568999999999999999999999999999984 57899999999999999999999999999999999999997
Q ss_pred C
Q 004289 130 P 130 (763)
Q Consensus 130 p 130 (763)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 27
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=138.75 Aligned_cols=95 Identities=21% Similarity=0.310 Sum_probs=82.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCCc
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSE 136 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~ 136 (763)
++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 48999999999999999999999999999997444899999999999999999999999999999999999987664222
Q ss_pred cc------cccceeEEeccCC
Q 004289 137 KE------INQGTLVVFNLDS 151 (763)
Q Consensus 137 ~~------~~~~tLfVgNLp~ 151 (763)
.. ....+|||+||+.
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCCCccccCCCceecCCCCC
Confidence 11 1245899999973
No 28
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=1.8e-16 Score=149.86 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=76.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee
Q 004289 94 GFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 173 (763)
Q Consensus 94 GfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri 173 (763)
-++|++|.|...|.+||..+++....|+. .+.+..+ ........+|||+|||.++++++|+++|+.||+|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36889999999999999999887766544 2233333 233445679999999999999999999999999999887
Q ss_pred -----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 174 -----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 174 -----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
++..+|||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 45668899999999999999999999999999999999998765
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=138.39 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
+..+|||+||++++++++|+++|++||+|++|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4569999999999999999999999999999886 46778999999999999999999999999999999999998
Q ss_pred CchhHHH
Q 004289 215 LRGLRKC 221 (763)
Q Consensus 215 ~k~~rr~ 221 (763)
.+..+++
T Consensus 85 ~~~~~~~ 91 (110)
T 3s8s_A 85 KGQQRMK 91 (110)
T ss_dssp TTHHHHH
T ss_pred CCcHHHH
Confidence 8876653
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=133.36 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=76.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999985 677899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004289 128 SIPKDNPS 135 (763)
Q Consensus 128 a~pk~~~~ 135 (763)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 98876543
No 31
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=137.77 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=73.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcc--cCCCcccccccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYSI 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~--l~Gr~L~V~~a~ 129 (763)
...|+++|||+|||.++++++|+++|++||+|..+++ .+.||||||+|.+.++|++|++.|++.. +.|++|+|.|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4468999999999999999999999999999999987 3578999999999999999999999976 789999999998
Q ss_pred CCC
Q 004289 130 PKD 132 (763)
Q Consensus 130 pk~ 132 (763)
+++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 764
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=137.79 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=75.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh--cccCCCcccccccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLDIHYSI 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng--~~l~Gr~L~V~~a~ 129 (763)
.+.+.++|||+|||++++|++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 45678999999999999999999999999999999973 3589999999999999999998874 78999999999998
Q ss_pred CCCCCCc
Q 004289 130 PKDNPSE 136 (763)
Q Consensus 130 pk~~~~~ 136 (763)
++.....
T Consensus 91 ~~~~~~~ 97 (105)
T 1sjq_A 91 HKELKTD 97 (105)
T ss_dssp SSSCCCT
T ss_pred CCCCCcc
Confidence 8766544
No 33
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=135.65 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcc--cCCCccccc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIH 126 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~--l~Gr~L~V~ 126 (763)
.+....|+++|||+|||++++|++|+++|++||+|..|.+. +.||||||+|.+.++|++|++.|++.. +.|++|+|.
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34456788999999999999999999999999999999863 458999999999999999999998754 899999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
|+.++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876543
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=137.26 Aligned_cols=79 Identities=20% Similarity=0.356 Sum_probs=71.6
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcC-CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhh-hcccCCCccccccc
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQ-NKLTRSGKLDIHYS 128 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG-~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Ln-g~~l~Gr~L~V~~a 128 (763)
+++|||+|||+++||++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8998874 57899999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 004289 129 IPKDNP 134 (763)
Q Consensus 129 ~pk~~~ 134 (763)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=139.00 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=73.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
+.+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.||++.|.|++|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999999999999999984 588999999999999999999999999999999999999
Q ss_pred cCCC
Q 004289 128 SIPK 131 (763)
Q Consensus 128 a~pk 131 (763)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 36
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1.6e-15 Score=147.52 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=73.0
Q ss_pred EEeCCHHHHHHHHHHhhhcccC--CCcccccccCCCC----------------CCCccccccceeEEeccCCCCCHHHHH
Q 004289 98 ISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSIPKD----------------NPSEKEINQGTLVVFNLDSSVSNDELH 159 (763)
Q Consensus 98 V~F~d~e~AekAl~~Lng~~l~--Gr~L~V~~a~pk~----------------~~~~~~~~~~tLfVgNLp~svTeedLr 159 (763)
.+|.+.++|+.|+..|++.... |+.+...+..... ..........+|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987665 5555554422110 011122334589999999999999999
Q ss_pred HHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhHH
Q 004289 160 HIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 160 elFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~rr 220 (763)
++|++||.|+.|++ ++..+|||||+|.+.++|.+||+.|||..|.|++|+|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999887 44568999999999999999999999999999999999998877544
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=133.06 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
.....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334567899999999999999999999999999999985 4678899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 004289 126 HYSIPKDN 133 (763)
Q Consensus 126 ~~a~pk~~ 133 (763)
.|+.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987653
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.60 E-value=2.8e-15 Score=136.63 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=78.3
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
.+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445567799999999999999999999999999998874 67789999999999999999999999999999999
Q ss_pred cccccCCCCCCC
Q 004289 124 DIHYSIPKDNPS 135 (763)
Q Consensus 124 ~V~~a~pk~~~~ 135 (763)
+|.|+.++....
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999998876543
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=2.3e-15 Score=138.01 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=72.0
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
..+|||+|||+++++++|+++|++||.|++|++ ...++|||||+|.+.++|++||+.|+|..|.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 458999999999999999999999999999887 34458899999999999999999999999999999999998876
Q ss_pred hHH
Q 004289 218 LRK 220 (763)
Q Consensus 218 ~rr 220 (763)
++.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=132.90 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345567899999999999999999999999999999985 677899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 004289 125 IHYSIPKDNP 134 (763)
Q Consensus 125 V~~a~pk~~~ 134 (763)
|.|+.++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876553
No 41
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=2.1e-13 Score=141.90 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=72.8
Q ss_pred cccceeEEeccCCCCCHHHHH----HHhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLr----elFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
...++|||+|||.++++++|+ ++|+.||.|++|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 456799999999999999977 89999999999887 567789999999999999999999999999999999999
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
++.+.
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 97765
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.3e-15 Score=132.56 Aligned_cols=85 Identities=18% Similarity=0.381 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe------CCCcccEEEEEeCCHHHHHHHHHHh-hhcccCCCc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGK 122 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~------tgkskGfAFV~F~d~e~AekAl~~L-ng~~l~Gr~ 122 (763)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 335567899999999999999999999999999999985 4567999999999999999999999 899999999
Q ss_pred ccccccCCCCCC
Q 004289 123 LDIHYSIPKDNP 134 (763)
Q Consensus 123 L~V~~a~pk~~~ 134 (763)
|+|.|+.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999887653
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=131.25 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ |++..|.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999985 46789999999999999999998 99999999999999
Q ss_pred ccCCCCCCC
Q 004289 127 YSIPKDNPS 135 (763)
Q Consensus 127 ~a~pk~~~~ 135 (763)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998876543
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=5.3e-15 Score=129.01 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=75.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
...+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3456799999999999999999999999999999885 5678999999999999999999999999999999999999
Q ss_pred CCCCC
Q 004289 129 IPKDN 133 (763)
Q Consensus 129 ~pk~~ 133 (763)
.++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=139.23 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=79.0
Q ss_pred CCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh--cccCCCccc
Q 004289 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN--KLTRSGKLD 124 (763)
Q Consensus 47 G~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng--~~l~Gr~L~ 124 (763)
++......++++|||+|||++++|++|+++|++||+|..|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+
T Consensus 22 ~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 22 GDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4444556788999999999999999999999999999999873 4589999999999999999999986 579999999
Q ss_pred ccccCCCCCCCccc
Q 004289 125 IHYSIPKDNPSEKE 138 (763)
Q Consensus 125 V~~a~pk~~~~~~~ 138 (763)
|.|+.++.......
T Consensus 101 V~~a~~k~~~~~~~ 114 (119)
T 2ad9_A 101 IQFSNHKELKTDSS 114 (119)
T ss_dssp EEECSSSSCCCCCC
T ss_pred EEEccCCCCCcccc
Confidence 99998877655443
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.9e-15 Score=129.96 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999985 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004289 129 IPKDNP 134 (763)
Q Consensus 129 ~pk~~~ 134 (763)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887653
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=5.9e-15 Score=134.31 Aligned_cols=85 Identities=15% Similarity=0.324 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
.....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 335567899999999999999999999999999999885 567799999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 004289 125 IHYSIPKDNP 134 (763)
Q Consensus 125 V~~a~pk~~~ 134 (763)
|.|+.++...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.1e-15 Score=131.21 Aligned_cols=84 Identities=14% Similarity=0.356 Sum_probs=76.0
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..+.+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35567899999999999999999999999999999985 344789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004289 128 SIPKDNP 134 (763)
Q Consensus 128 a~pk~~~ 134 (763)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9886553
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=8e-15 Score=131.15 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCC---Cccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS---GKLD 124 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G---r~L~ 124 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.+ ++|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4456899999999999999999999999999999884 46679999999999999999999999999998 9999
Q ss_pred ccccCCCCCC
Q 004289 125 IHYSIPKDNP 134 (763)
Q Consensus 125 V~~a~pk~~~ 134 (763)
|.|+.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887653
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=3.9e-15 Score=131.43 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
|+++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5799999999999999999999999999999985 46789999999999999999999999999999999999998
Q ss_pred CCCC
Q 004289 130 PKDN 133 (763)
Q Consensus 130 pk~~ 133 (763)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=132.90 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=77.3
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
.+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445667899999999999999999999999999999985 47789999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 004289 124 DIHYSIPKDN 133 (763)
Q Consensus 124 ~V~~a~pk~~ 133 (763)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dnm_A 86 RVQVARYGRR 95 (103)
T ss_dssp EEEECSSCCS
T ss_pred EEEECCcCCC
Confidence 9999987654
No 52
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=134.16 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=69.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccC-ceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEEec
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKLEPS 213 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fG-eVkeIri-----t~~skG~aFVeF~d~esA~kAL~~L-nG~~I~Gr~LkVe~a 213 (763)
+++|||+|||.++|+++|+++|++|| +|++|++ ++.++|||||+|.+.++|++||+.+ ++..|.|++|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35899999999999999999999999 8999876 4667899999999999999999987 467899999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9865
No 53
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8e-15 Score=129.63 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=73.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccC--CCcccccccCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR--SGKLDIHYSIP 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~--Gr~L~V~~a~p 130 (763)
..++++|||+|||.++++++|+++|++||+|..|++.. .+|||||+|.+.++|++|++.|++..+. |++|+|.|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 45679999999999999999999999999999999743 4899999999999999999999999999 99999999987
Q ss_pred CCC
Q 004289 131 KDN 133 (763)
Q Consensus 131 k~~ 133 (763)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-15 Score=131.56 Aligned_cols=85 Identities=14% Similarity=0.311 Sum_probs=77.4
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34557899999999999999999999999999999885 467899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004289 128 SIPKDNPS 135 (763)
Q Consensus 128 a~pk~~~~ 135 (763)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876543
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=130.15 Aligned_cols=85 Identities=15% Similarity=0.311 Sum_probs=76.5
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
....+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35567899999999999999999999999999999985 334699999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 004289 128 SIPKDNPS 135 (763)
Q Consensus 128 a~pk~~~~ 135 (763)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98876543
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=128.79 Aligned_cols=78 Identities=14% Similarity=0.322 Sum_probs=70.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999885 5678999999999999999999999999999999999999
Q ss_pred CCC
Q 004289 129 IPK 131 (763)
Q Consensus 129 ~pk 131 (763)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 57
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.2e-15 Score=131.32 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=72.8
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhH
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 219 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~r 219 (763)
....|||+||++.+|+++|+++|.+||+|+++++.. +||||||||.+.++|++|++.||+..+.|++|+|.++...+..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~~ 84 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQ 84 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHHH
Confidence 356899999999999999999999999999999844 7999999999999999999999999999999999999644433
Q ss_pred HH
Q 004289 220 KC 221 (763)
Q Consensus 220 r~ 221 (763)
+.
T Consensus 85 ~~ 86 (89)
T 2wbr_A 85 SI 86 (89)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 58
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.58 E-value=4.5e-15 Score=126.81 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=72.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
+.+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999884 577899999999999999999999999999999999999987
Q ss_pred CC
Q 004289 131 KD 132 (763)
Q Consensus 131 k~ 132 (763)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=131.60 Aligned_cols=83 Identities=13% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
....+.++|||+|||.++++++|+++|++||+|..|++ +.+++|||||+|.+.++|++|++.|++..|.|++|+|.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34567799999999999999999999999999999885 4567899999999999999999999999999999999999
Q ss_pred CCCCC
Q 004289 129 IPKDN 133 (763)
Q Consensus 129 ~pk~~ 133 (763)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 60
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.1e-15 Score=131.23 Aligned_cols=83 Identities=14% Similarity=0.329 Sum_probs=75.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999985 45689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876653
No 61
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=133.26 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhh--hcccCCCcccccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLDIHY 127 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Ln--g~~l~Gr~L~V~~ 127 (763)
.....++++|||+|||+++++++|+++|++||+|..|.+. +.||||||+|.+.++|++|++.|+ +..+.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3455688999999999999999999999999999999873 459999999999999999999886 4679999999999
Q ss_pred cCCCCCC
Q 004289 128 SIPKDNP 134 (763)
Q Consensus 128 a~pk~~~ 134 (763)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876554
No 62
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.8e-15 Score=132.29 Aligned_cols=84 Identities=18% Similarity=0.364 Sum_probs=76.9
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999984 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 004289 126 HYSIPKDNP 134 (763)
Q Consensus 126 ~~a~pk~~~ 134 (763)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999887653
No 63
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=134.53 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCC-CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcc--cCCCccccccc
Q 004289 52 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYS 128 (763)
Q Consensus 52 ~e~psRtLfVgNLP~-~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~--l~Gr~L~V~~a 128 (763)
...++++|||+|||+ +++|++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++.. |.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 9999999999999999999997 3567999999999999999999999754 99999999999
Q ss_pred CCCCC
Q 004289 129 IPKDN 133 (763)
Q Consensus 129 ~pk~~ 133 (763)
..+..
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 86543
No 64
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=7.2e-15 Score=133.45 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345567899999999999999999999999999999884 467899999999999999999999999999999999
Q ss_pred ccccCCCC
Q 004289 125 IHYSIPKD 132 (763)
Q Consensus 125 V~~a~pk~ 132 (763)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998875
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=129.25 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=72.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4457789999999999999999999999999999985 36789999999999999999999999999999999999
Q ss_pred ccC
Q 004289 127 YSI 129 (763)
Q Consensus 127 ~a~ 129 (763)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=130.42 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR--------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~--------tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46789999999999999999999999999999884 2378899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 004289 126 HYSIPKDNP 134 (763)
Q Consensus 126 ~~a~pk~~~ 134 (763)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876653
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=8.5e-15 Score=131.20 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhccc---CCC
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLT---RSG 121 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l---~Gr 121 (763)
+..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .++
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 345567899999999999999999999999999999985 467899999999999999999999999987 899
Q ss_pred cccccccCCCCC
Q 004289 122 KLDIHYSIPKDN 133 (763)
Q Consensus 122 ~L~V~~a~pk~~ 133 (763)
+|+|.|+.++..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=129.54 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=73.7
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.....+|||+|||.++++++|+++|+.||.|++|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345679999999999999999999999999999887 3456799999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98753
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=9.1e-15 Score=126.01 Aligned_cols=77 Identities=18% Similarity=0.409 Sum_probs=69.8
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
+..+|||+|||.++++++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4569999999999999999999999999999887 45568999999999999999999999999999999999998
Q ss_pred Cc
Q 004289 215 LR 216 (763)
Q Consensus 215 ~k 216 (763)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 70
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.1e-15 Score=131.71 Aligned_cols=83 Identities=12% Similarity=0.317 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 334456789999999999999999999999999999985 477899999999999999999999999999999999
Q ss_pred ccccCCCC
Q 004289 125 IHYSIPKD 132 (763)
Q Consensus 125 V~~a~pk~ 132 (763)
|.|+.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998754
No 71
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=131.27 Aligned_cols=85 Identities=15% Similarity=0.330 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhh------hccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQ------NKLT 118 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Ln------g~~l 118 (763)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+ +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 335567899999999999999999999999999999985 46789999999999999999999999 9999
Q ss_pred CCCcccccccCCCCCC
Q 004289 119 RSGKLDIHYSIPKDNP 134 (763)
Q Consensus 119 ~Gr~L~V~~a~pk~~~ 134 (763)
.|++|+|.|+.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999887654
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.9e-15 Score=129.81 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=73.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|.+|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44679999999999999999999999999999987 4556899999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 98763
No 73
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=132.04 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=76.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999985 46689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.57 E-value=6.6e-15 Score=126.35 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..+.++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999984 566899999999999999999999999999999999998
Q ss_pred cC
Q 004289 128 SI 129 (763)
Q Consensus 128 a~ 129 (763)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 75
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=129.01 Aligned_cols=79 Identities=13% Similarity=0.274 Sum_probs=73.3
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999985 46789999999999999999999999999999999999
Q ss_pred ccCC
Q 004289 127 YSIP 130 (763)
Q Consensus 127 ~a~p 130 (763)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 76
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=126.89 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|+|.|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999984 8999999999999999999999999999999999998876
Q ss_pred CC
Q 004289 133 NP 134 (763)
Q Consensus 133 ~~ 134 (763)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=1.1e-14 Score=124.46 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=70.8
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.+|||+|||.++++++|+++|+.||.|.+|++ ++..+|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 48999999999999999999999999999876 4556899999999999999999999999999999999999976
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=131.45 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=72.9
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
.....+|||+|||.++++++|+++|++||.|+.|++ +...++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345679999999999999999999999999999887 444578999999999999999999999999999999999987
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
+.
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=129.59 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhh-cCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcc-cCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQ-YGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKL-TRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFsk-fG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~-l~Gr~L~V 125 (763)
...+.++|||+|||.++++++|+++|++ ||+|..|++ +++++|||||+|.+.++|++|++.|++.. +.|++|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4567899999999999999999999999 999999985 56789999999999999999999999999 99999999
Q ss_pred cccCCCCCC
Q 004289 126 HYSIPKDNP 134 (763)
Q Consensus 126 ~~a~pk~~~ 134 (763)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876653
No 80
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=129.47 Aligned_cols=81 Identities=28% Similarity=0.363 Sum_probs=73.5
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit---~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
.....+|||+|||..+++++|+++|++||.|+.|++. ...++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 3456799999999999999999999999999998873 3357899999999999999999999999999999999999
Q ss_pred Cchh
Q 004289 215 LRGL 218 (763)
Q Consensus 215 ~k~~ 218 (763)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 8653
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=130.41 Aligned_cols=81 Identities=15% Similarity=0.338 Sum_probs=74.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEE-Ee-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTF-YR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv-~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
.++++|||+|||.++++++|+++|++||+|..+ ++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999887 64 566899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004289 128 SIPKDNP 134 (763)
Q Consensus 128 a~pk~~~ 134 (763)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887654
No 82
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.8e-15 Score=130.54 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 3457789999999999999999999999999999987 456999999999999999999999999999999999999876
Q ss_pred CC
Q 004289 132 DN 133 (763)
Q Consensus 132 ~~ 133 (763)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 83
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=5.8e-15 Score=129.51 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
.+..+.+.++|||+|||+++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|+
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3445667899999999999999999999999999999985 356799999999999999999999999999999999
Q ss_pred ccccCC
Q 004289 125 IHYSIP 130 (763)
Q Consensus 125 V~~a~p 130 (763)
|.|+..
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999753
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-15 Score=130.46 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=74.6
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit---~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
.....+|||+|||.++++++|+++|++||+|..|++. +..++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3456799999999999999999999999999998873 4678999999999999999999999999999999999999
Q ss_pred CchhH
Q 004289 215 LRGLR 219 (763)
Q Consensus 215 ~k~~r 219 (763)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 85
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=1.4e-14 Score=124.37 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=70.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||.|..|++ ++..++||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34679999999999999999999999999999886 3456899999999999999999999999999999999998
Q ss_pred c
Q 004289 214 H 214 (763)
Q Consensus 214 ~ 214 (763)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 86
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=127.64 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+....+.++|||+|||.++++++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..|.|++|+|.|+
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34456678999999999999999999999999999999984 669999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004289 129 IPKDNP 134 (763)
Q Consensus 129 ~pk~~~ 134 (763)
.++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 887553
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=9.1e-15 Score=137.22 Aligned_cols=83 Identities=16% Similarity=0.330 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345667899999999999999999999999999999985 467899999999999999999999999999999999
Q ss_pred ccccCCCC
Q 004289 125 IHYSIPKD 132 (763)
Q Consensus 125 V~~a~pk~ 132 (763)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 88
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=135.68 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=73.5
Q ss_pred CCCCCcEEEecCCCCC-CCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhc--ccCCCccccccc
Q 004289 52 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNK--LTRSGKLDIHYS 128 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~-vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~--~l~Gr~L~V~~a 128 (763)
...++++|||+|||++ +++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++. .|.|++|+|.|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3567899999999998 999999999999999999997 467999999999999999999999764 599999999999
Q ss_pred CCCCC
Q 004289 129 IPKDN 133 (763)
Q Consensus 129 ~pk~~ 133 (763)
..+..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 87654
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=8.7e-15 Score=133.36 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=73.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|+.||.|++|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44579999999999999999999999999999876 4566789999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 97753
No 90
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.4e-15 Score=125.89 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHh-hhcccCCCccccccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSL-QNKLTRSGKLDIHYS 128 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~L-ng~~l~Gr~L~V~~a 128 (763)
+..+.+.++|||+|||.++++++|+++|++||+|..+++ .+++|||||+|.+.++|++|++.| ++..+.|++|+|.|+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV-VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE-ECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 345567899999999999999999999999999999997 347899999999999999999999 999999999999987
Q ss_pred C
Q 004289 129 I 129 (763)
Q Consensus 129 ~ 129 (763)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-14 Score=126.03 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=71.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45679999999999999999999999999999887 3566889999999999999999999999999999999998
Q ss_pred cC
Q 004289 214 HL 215 (763)
Q Consensus 214 ~~ 215 (763)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 92
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=130.24 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA------SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~t------gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
+....+.++|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 44556789999999999999999999999999 9999852 778999999999999999999 999999999999
Q ss_pred cccccCCCCCC
Q 004289 124 DIHYSIPKDNP 134 (763)
Q Consensus 124 ~V~~a~pk~~~ 134 (763)
+|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887653
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=9.9e-15 Score=130.70 Aligned_cols=85 Identities=15% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
.....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|++|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 345667899999999999999999999999999999884 567899999999999999999998 99999999999
Q ss_pred ccccCCCCCCC
Q 004289 125 IHYSIPKDNPS 135 (763)
Q Consensus 125 V~~a~pk~~~~ 135 (763)
|.++.++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99998877643
No 94
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=129.90 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=73.7
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecC------CcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEE
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP------QKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKL 210 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~------~skG~aFVeF~d~esA~kAL~~L-nG~~I~Gr~LkV 210 (763)
.....+|||+|||..+++++|+++|++||.|+.|++.. ..++||||+|.+.++|++|++.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 44567999999999999999999999999999988743 35899999999999999999999 999999999999
Q ss_pred EeccCchh
Q 004289 211 EPSHLRGL 218 (763)
Q Consensus 211 e~a~~k~~ 218 (763)
++++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99998653
No 95
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=130.00 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=73.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45679999999999999999999999999999887 4556889999999999999999999999999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8765
No 96
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=131.77 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 345667899999999999999999999999999999985 467899999999999999999999998 89999999
Q ss_pred ccccCCCCCC
Q 004289 125 IHYSIPKDNP 134 (763)
Q Consensus 125 V~~a~pk~~~ 134 (763)
|.|+.++..+
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999776543
No 97
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=131.53 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=71.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY--IAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~--I~Gr~LkVe~a~~k 216 (763)
.+..+|||+|||.++|+++|+++|++||.|++|++.. .||+|||+|.+.++|.+|++.|++.. |.|++|+|+|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3467999999999999999999999999999998854 68999999999999999999999875 88999999999876
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
+
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 98
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=128.90 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=73.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|+.|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 44679999999999999999999999999999887 4566889999999999999999999999999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9765
No 99
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=131.82 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=68.2
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCc--eeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCC----eeCCeEE
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGE--IKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSR----YIAGKQI 208 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGe--VkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~----~I~Gr~L 208 (763)
.-.||||+|||+++|+++|+++|++||. |.+|++ ++.+||||||+|.+.++|++|++.|||. .|.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3469999999999999999999999995 566765 4677899999999999999999999997 5999999
Q ss_pred EEEeccC
Q 004289 209 KLEPSHL 215 (763)
Q Consensus 209 kVe~a~~ 215 (763)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 100
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.5e-15 Score=130.23 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=72.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...++|||+|||.++++++|+++|++||.|..+++. +++|||||+|.+.++|++|++.|++..+.|++|+|.|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 456899999999999999999999999999999973 78999999999999999999999999999999999998764
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=1.4e-14 Score=130.79 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=73.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34569999999999999999999999999999887 3455899999999999999999999999999999999999
Q ss_pred cCchhH
Q 004289 214 HLRGLR 219 (763)
Q Consensus 214 ~~k~~r 219 (763)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 887644
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.8e-15 Score=134.19 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=71.6
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEEEeccCch
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~Ln--G~~I~Gr~LkVe~a~~k~ 217 (763)
...+|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|++|++.|+ +.+|.|++|+|.+++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 456999999999999999999999999999999855 38999999999999999999886 478999999999999776
Q ss_pred hH
Q 004289 218 LR 219 (763)
Q Consensus 218 ~r 219 (763)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 103
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=2e-14 Score=126.84 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=73.1
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
.++|||+|||.++++++|+++|++||.|.+|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 468999999999999999999999999999887 355689999999999999999999999999999999999998
Q ss_pred chhH
Q 004289 216 RGLR 219 (763)
Q Consensus 216 k~~r 219 (763)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7644
No 104
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=2e-14 Score=130.80 Aligned_cols=80 Identities=19% Similarity=0.411 Sum_probs=73.5
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||..+++++|+++|+.||.|+.|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45679999999999999999999999999999887 4555899999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 98753
No 105
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=1.7e-14 Score=129.05 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=73.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC---eEEEEE
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG---KQIKLE 211 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G---r~LkVe 211 (763)
....+|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.|||..+.| ++|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 44679999999999999999999999999999887 34458899999999999999999999999998 999999
Q ss_pred eccCchhH
Q 004289 212 PSHLRGLR 219 (763)
Q Consensus 212 ~a~~k~~r 219 (763)
+++++.++
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987644
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=128.15 Aligned_cols=80 Identities=10% Similarity=0.287 Sum_probs=73.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeE-EEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc----
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVR-TFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK---- 122 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~-sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~---- 122 (763)
..++++|||+|||+++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 8874 5678999999999999999999999999999999
Q ss_pred ccccccCCCC
Q 004289 123 LDIHYSIPKD 132 (763)
Q Consensus 123 L~V~~a~pk~ 132 (763)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987654
No 107
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=129.50 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=73.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|++|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 44679999999999999999999999999999887 3456899999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 108
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=1.2e-14 Score=131.68 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=81.3
Q ss_pred CCCcccccccCCCCCCCccccccceeEEeccCCC-CCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHH
Q 004289 119 RSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRE 197 (763)
Q Consensus 119 ~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~s-vTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~ 197 (763)
.|.++.+..+.+.... .......+|||+|||.. +++++|+++|++||.|++|++ .++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4677777766554332 22334579999999999 999999999999999999998 789999999999999999999
Q ss_pred hCCCeeCCeEEEEEeccCch
Q 004289 198 LNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 198 LnG~~I~Gr~LkVe~a~~k~ 217 (763)
||+..|.|++|+|++++++.
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998544
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=124.97 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=70.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|..|++. +..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456799999999999999999999999999998873 456789999999999999999999999999999999998
Q ss_pred c
Q 004289 214 H 214 (763)
Q Consensus 214 ~ 214 (763)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 110
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.4e-14 Score=130.83 Aligned_cols=83 Identities=14% Similarity=0.294 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 334556789999999999999999999999999999985 467799999999999999999999999999999999
Q ss_pred ccccCCCC
Q 004289 125 IHYSIPKD 132 (763)
Q Consensus 125 V~~a~pk~ 132 (763)
|.|+.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998764
No 111
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=135.43 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=74.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHH----HHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~----~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
...++++|||+|||+++++++|+ ++|++||+|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34578999999999999999876 69999999999886 5688999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 004289 126 HYSIPKDN 133 (763)
Q Consensus 126 ~~a~pk~~ 133 (763)
.|+.++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987653
No 112
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=129.83 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=72.7
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|+.||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34569999999999999999999999999999887 3566899999999999999999999999999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8765
No 113
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=126.62 Aligned_cols=78 Identities=28% Similarity=0.376 Sum_probs=72.1
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...+|||+|||.++++++|+++|++||+|++|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4569999999999999999999999999999887 34568899999999999999999999999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 765
No 114
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=5.1e-15 Score=129.44 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=66.1
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcC--CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYG--DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG--~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
.+|||+|||.++++++|+++|++|| +|.++++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8888873 67899999999999999999999999999999999999998
Q ss_pred CCCC
Q 004289 130 PKDN 133 (763)
Q Consensus 130 pk~~ 133 (763)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7644
No 115
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=2.2e-14 Score=128.33 Aligned_cols=81 Identities=17% Similarity=0.363 Sum_probs=74.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...+.++|||+|||+++++++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34567999999999999999999999999999999873 789999999999999999999999999999999999887
Q ss_pred CCCC
Q 004289 132 DNPS 135 (763)
Q Consensus 132 ~~~~ 135 (763)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=129.21 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=71.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHh--CCCeeCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL--NSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~L--nG~~I~Gr~LkVe~a~~k 216 (763)
....+|||+|||.++++++|+++|++||+|++|++.. .||||||+|.+.++|.+|++.| ++..|.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 4467999999999999999999999999999998754 3899999999999999999987 567899999999999976
Q ss_pred hh
Q 004289 217 GL 218 (763)
Q Consensus 217 ~~ 218 (763)
..
T Consensus 92 ~~ 93 (101)
T 2cq1_A 92 EL 93 (101)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.54 E-value=2.2e-14 Score=131.15 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
.+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445667899999999999999999999999999999985 46789999999999999999999999999999999
Q ss_pred cccccC
Q 004289 124 DIHYSI 129 (763)
Q Consensus 124 ~V~~a~ 129 (763)
+|+|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999863
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=127.31 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=73.0
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecC---CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP---QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~---~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
.....+|||+|||.++++++|+++|++||.|+.|++.. ..++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34567999999999999999999999999999988732 358899999999999999999999999999999999999
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
++.
T Consensus 92 ~~~ 94 (103)
T 2cq3_A 92 ARV 94 (103)
T ss_dssp SSC
T ss_pred cCC
Confidence 765
No 119
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=4e-15 Score=166.69 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=103.2
Q ss_pred HHHHHhhcCCeEEEEe-------CCCcccEE-----EEEeCCHHHHHHHHHHhhhcccCCC-----------c--ccccc
Q 004289 73 LKALFEQYGDVRTFYR-------ASKHCGFV-----TISYYDIRAARNAMKSLQNKLTRSG-----------K--LDIHY 127 (763)
Q Consensus 73 L~~lFskfG~I~sv~~-------tgkskGfA-----FV~F~d~e~AekAl~~Lng~~l~Gr-----------~--L~V~~ 127 (763)
|.+||.++|+|..|.. ..+..+|+ |+.|.+..++..++..++......+ . ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999988731 11233444 7788776555444332222111100 0 01111
Q ss_pred cCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 004289 128 SIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRY 202 (763)
Q Consensus 128 a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~ 202 (763)
..+............+|||+|||..+|+++|+++|++||.|+.|.+ ++..+|||||+|.+.++|.+||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222223344579999999999999999999999999999887 45568999999999999999999999999
Q ss_pred eCCeEEEEEeccCch
Q 004289 203 IAGKQIKLEPSHLRG 217 (763)
Q Consensus 203 I~Gr~LkVe~a~~k~ 217 (763)
|.|++|+|.++.++.
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=127.47 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
...+++|||+|||.++++++|+++|++||.|....++++++|||||+|.+.++|++|++.|++..|.|++|+|.++.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 44578999999999999999999999999996333467899999999999999999999999999999999999998764
No 121
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=127.56 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=72.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||.|++|++ ++..++||||+|.+.++|++|++ |++..|.|++|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999887 34568999999999999999998 9999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 98753
No 122
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=124.34 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=70.8
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecC-----C-cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP-----Q-KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~-----~-skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
..+|||+|||.++++++|+++|++||.|.+|++.. . .+|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999988721 2 68899999999999999999999999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 123
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=129.38 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=74.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
...+.++|||+|||.++++++|+++|++||+|.-++. +++++|||||+|.+.++|++|++.|++..|.|++|+|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4567899999999999999999999999999955443 678899999999999999999999999999999999999988
Q ss_pred CCC
Q 004289 131 KDN 133 (763)
Q Consensus 131 k~~ 133 (763)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 124
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=128.95 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=73.6
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhC------CCeeCCeE
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELN------SRYIAGKQ 207 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~Ln------G~~I~Gr~ 207 (763)
....+|||+|||.++++++|+++|+.||.|..|++. +..++||||+|.+.++|++|++.|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 446799999999999999999999999999998873 5678999999999999999999999 99999999
Q ss_pred EEEEeccCchh
Q 004289 208 IKLEPSHLRGL 218 (763)
Q Consensus 208 LkVe~a~~k~~ 218 (763)
|+|++++++..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999998754
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=126.05 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=71.6
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|||.++++++|+++|++||+|++|++. ++||||+|.+.++|++|++.||+..|.|++|+|++++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 456799999999999999999999999999999985 7899999999999999999999999999999999998765
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=126.71 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=72.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeC--CeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA--GKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~--Gr~LkVe~a~~k 216 (763)
....+|||+|||.++++++|+++|++||+|++|++... ++||||+|.+.++|++|++.||+..|. |++|+|++++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 34579999999999999999999999999999988544 889999999999999999999999999 999999999986
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 94 ~ 94 (97)
T 1why_A 94 P 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 127
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.53 E-value=2.1e-14 Score=132.65 Aligned_cols=85 Identities=13% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 334556789999999999999999999999999999985 677899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 004289 125 IHYSIPKDNP 134 (763)
Q Consensus 125 V~~a~pk~~~ 134 (763)
|.|+.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=124.57 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=70.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+.++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999984 5678999999999999999999999999999999999875
Q ss_pred C
Q 004289 129 I 129 (763)
Q Consensus 129 ~ 129 (763)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=127.61 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKL 117 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~s--------v~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~ 117 (763)
....+.++|||+|||.++++++|+++|++||.|.. +++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567789999999999999999999999999988 663 56789999999999999999999999999
Q ss_pred cCCCcccccccC
Q 004289 118 TRSGKLDIHYSI 129 (763)
Q Consensus 118 l~Gr~L~V~~a~ 129 (763)
+.|++|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 130
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=134.25 Aligned_cols=84 Identities=17% Similarity=0.338 Sum_probs=76.7
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566799999999999999999999999999999985 4678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 004289 126 HYSIPKDNP 134 (763)
Q Consensus 126 ~~a~pk~~~ 134 (763)
.++.++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887653
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=1.1e-14 Score=128.28 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=74.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHH----HHHhhcCCeEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYR--ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~----~lFskfG~I~sv~~--tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
...++++|||+|||.++++++|+ ++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678999999999999999999 99999999999986 3478899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 004289 126 HYSIPKDN 133 (763)
Q Consensus 126 ~~a~pk~~ 133 (763)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987653
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=128.28 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=76.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.+.+.++|||+|||.++++++|+++|++||+|..+..+++++|||||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44567999999999999999999999999999888778899999999999999999999999999999999999999876
Q ss_pred CC
Q 004289 132 DN 133 (763)
Q Consensus 132 ~~ 133 (763)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 133
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=5.4e-15 Score=129.28 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=65.8
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccC--ceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fG--eVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
.+|||+|||.++++++|+++|++|| +|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 8988876 56778999999999999999999999999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 765
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=3.1e-14 Score=128.83 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=72.4
Q ss_pred CCCCCcEEEecCCCCC-CCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 52 DEHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~-vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
...+.++|||+|||.+ +++++|+++|++||+|..|++ ++|||||+|.+.++|++|++.|++..|.|++|+|.|+.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3445689999999999 999999999999999999998 789999999999999999999999999999999999975
Q ss_pred CC
Q 004289 131 KD 132 (763)
Q Consensus 131 k~ 132 (763)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 135
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=128.78 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=72.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|+.||.|..|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 44679999999999999999999999999999887 3566899999999999999999999999999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 136
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=129.20 Aligned_cols=80 Identities=21% Similarity=0.399 Sum_probs=73.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|+.|++. +..++||||+|.+.++|++|++.||+..|.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346799999999999999999999999999998873 346889999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 137
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=131.85 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=73.6
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
+....+|||+|||.++++++|+++|+.||.|+.|++. +..+|||||+|.+.++|++|| .|||..|.|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3446799999999999999999999999999999873 567899999999999999999 9999999999999999
Q ss_pred ccCchhH
Q 004289 213 SHLRGLR 219 (763)
Q Consensus 213 a~~k~~r 219 (763)
++++..+
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9876644
No 138
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=128.61 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4467899999999999999999999999999998884 456789999999999999999999999999999999999
Q ss_pred cCCCC
Q 004289 128 SIPKD 132 (763)
Q Consensus 128 a~pk~ 132 (763)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 86543
No 139
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=126.68 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=71.3
Q ss_pred ccceeEEeccCCCCCHHHHH----HHhcccCceeEeeecCC--cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 140 NQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRETPQ--KIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLr----elFs~fGeVkeIrit~~--skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
+..+|||+|||.++++++|+ ++|++||+|++|++... .++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45699999999999999999 99999999999988422 2889999999999999999999999999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 88 ~~~~ 91 (96)
T 2dgx_A 88 TGAS 91 (96)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 140
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=125.12 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=70.7
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||..+++++|+++|++||+|++|++. +..++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 446799999999999999999999999999998873 3457899999999999999999999999999999999987
Q ss_pred C
Q 004289 215 L 215 (763)
Q Consensus 215 ~ 215 (763)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=127.12 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.2
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEe-ee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI-RE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeI-ri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
...+|||+|||.++++++|+++|+.||.|..| ++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35699999999999999999999999999888 76 3446899999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88763
No 142
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=131.91 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=75.3
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
+..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999885 567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004289 128 SIPKDN 133 (763)
Q Consensus 128 a~pk~~ 133 (763)
+.++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 143
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.7e-14 Score=127.63 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 33456789999999999999999999999997 998884 4778999999999999999999 8999999999999
Q ss_pred ccccCCCCCC
Q 004289 125 IHYSIPKDNP 134 (763)
Q Consensus 125 V~~a~pk~~~ 134 (763)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999887653
No 144
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=6.2e-15 Score=131.82 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCcEEEecCCCC------CCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCC-C
Q 004289 54 HPSRTLLLRKINS------NIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-G 121 (763)
Q Consensus 54 ~psRtLfVgNLP~------~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G-r 121 (763)
..+++|||+|||. ++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568999999999 9999999999999999999985 48899999999999999999999999999999 9
Q ss_pred cccccccCCC
Q 004289 122 KLDIHYSIPK 131 (763)
Q Consensus 122 ~L~V~~a~pk 131 (763)
+|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998764
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=126.97 Aligned_cols=79 Identities=28% Similarity=0.349 Sum_probs=74.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|||..+++++|+++|+.||.|+.+..++..+|||||+|.+.++|.+|++.|+|..|.|++|+|++++++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4567999999999999999999999999998886678889999999999999999999999999999999999998765
No 146
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=130.42 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=75.8
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeE--------EEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVR--------TFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKL 117 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~--------sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~ 117 (763)
....+.++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 4663 46789999999999999999999999999
Q ss_pred cCCCcccccccCCCCCC
Q 004289 118 TRSGKLDIHYSIPKDNP 134 (763)
Q Consensus 118 l~Gr~L~V~~a~pk~~~ 134 (763)
|.|++|+|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887653
No 147
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=130.05 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=73.3
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.....+|||+|||..+++++|+++|++||.|+.|++ ++..+|||||+|.+.++|++|++.|+|..|.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999886 355689999999999999999999999999999999999
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 148
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=2e-14 Score=130.59 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=72.8
Q ss_pred ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 136 EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 136 ~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..+....+|||+|||.++++++|+++|++||.|+.|++. +|||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 334556799999999999999999999999999999886 89999999999999999999999999999999999998
Q ss_pred chhH
Q 004289 216 RGLR 219 (763)
Q Consensus 216 k~~r 219 (763)
+..+
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7643
No 149
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=1.6e-14 Score=125.99 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=72.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
....+|||+|||.++++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34679999999999999999999999999999877 455689999999999999999999999999999999999987
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 150
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=135.01 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=72.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG--~~I~Gr~LkVe~a~~k 216 (763)
....+|||+|||+++++++|+++|++||+|++|++.. .||||||+|.+.++|.+|++.|++ ..|.|++|+|++++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 3456999999999999999999999999999998854 489999999999999999999874 6899999999999987
Q ss_pred hhH
Q 004289 217 GLR 219 (763)
Q Consensus 217 ~~r 219 (763)
..+
T Consensus 108 ~~~ 110 (119)
T 2ad9_A 108 ELK 110 (119)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 151
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=134.23 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=74.3
Q ss_pred cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 137 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 137 ~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
.....++|||+|||.++++++|+++|+.||+|++|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445679999999999999999999999999999887 34568999999999999999999999999999999999
Q ss_pred eccCchh
Q 004289 212 PSHLRGL 218 (763)
Q Consensus 212 ~a~~k~~ 218 (763)
+++++..
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9998753
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=128.43 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCC-----Cccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-----GKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G-----r~L~V~ 126 (763)
.....++|||+|||+++++++|+++|++||+|..|++... |||||+|.+.++|++||+.|+++.|.| ++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456789999999999999999999999999999997443 999999999999999999999999999 999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99886653
No 153
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=131.63 Aligned_cols=80 Identities=16% Similarity=0.350 Sum_probs=73.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4557799999999999999999999999999999885 3457999999999999999999999999999999999999
Q ss_pred CCC
Q 004289 129 IPK 131 (763)
Q Consensus 129 ~pk 131 (763)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 154
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=124.10 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...+.++|||+|||.++++++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..+.|++|+|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567899999999999999999999999999999984 669999999999999999999999999999999999876
Q ss_pred CC
Q 004289 132 DN 133 (763)
Q Consensus 132 ~~ 133 (763)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 155
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=130.44 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=70.5
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSR--YIAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~--~I~Gr~LkVe~a~~k 216 (763)
.+..+|||+|||.++++++|+++|++||+|++|++.. .|+||||+|.+.++|.+|++.|++. .|.|++|+|+|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 4467999999999999999999999999999998754 4899999999999999999998764 599999999999876
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 5
No 156
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=2.3e-14 Score=131.76 Aligned_cols=77 Identities=19% Similarity=0.104 Sum_probs=70.9
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccC-ceeEeee-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYG-EIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fG-eVkeIri-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
..+|||+|||+++++++|+++|++|| +|..+++ ...++|||||+|.+.++|++||+.|||.+|.|++|+|++++.+.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 46999999999999999999999999 9999988 46789999999999999999999999999999999999998654
No 157
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=129.05 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=75.6
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
...++|||+|||..+++++|+++|+.||.|..|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45679999999999999999999999999999876 3455899999999999999999999999999999999999
Q ss_pred cCchhHHH
Q 004289 214 HLRGLRKC 221 (763)
Q Consensus 214 ~~k~~rr~ 221 (763)
+++..++.
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 99876653
No 158
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.5e-15 Score=131.31 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=74.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.+.+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3446789999999999999999999999999998874 56779999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 004289 127 YSIPKDN 133 (763)
Q Consensus 127 ~a~pk~~ 133 (763)
|+.++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987643
No 159
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=123.67 Aligned_cols=78 Identities=10% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe------CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~------tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
..++|||+|||.++++++|+++|++||+|..+++ .++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999985 1238999999999999999999999999999999999998
Q ss_pred CCCC
Q 004289 129 IPKD 132 (763)
Q Consensus 129 ~pk~ 132 (763)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 160
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=128.41 Aligned_cols=82 Identities=12% Similarity=0.199 Sum_probs=74.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...+.++|||+|||.++++++|+++|++||+|..|++.. .+|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 345678999999999999999999999999999999743 3999999999999999999999999999999999999886
Q ss_pred CCC
Q 004289 132 DNP 134 (763)
Q Consensus 132 ~~~ 134 (763)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 553
No 161
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=2.3e-14 Score=128.36 Aligned_cols=80 Identities=15% Similarity=0.305 Sum_probs=73.0
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCee---CCeEEE
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYI---AGKQIK 209 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I---~Gr~Lk 209 (763)
+....+|||+|||.++++++|+++|++||+|++|++ ++..++||||+|.+.++|++|++.||+..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345679999999999999999999999999999887 345689999999999999999999999988 899999
Q ss_pred EEeccCch
Q 004289 210 LEPSHLRG 217 (763)
Q Consensus 210 Ve~a~~k~ 217 (763)
|++++++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99999765
No 162
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=129.58 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=72.8
Q ss_pred cccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 137 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 137 ~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit---~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
......+|||+|||.++++++|+++|++||+|++|++. ...+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34456799999999999999999999999999998873 335899999999999999999999999999999999999
Q ss_pred cCc
Q 004289 214 HLR 216 (763)
Q Consensus 214 ~~k 216 (763)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 163
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.6e-14 Score=127.55 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..+||||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999997 458999999999999999999999999999999999887
No 164
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-14 Score=127.14 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=71.5
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecC--------CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETP--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~--------~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
...+|||+|||.++++++|+++|++||+|+.|++.. ..++||||+|.+.++|++|++.|||..|.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356999999999999999999999999999988731 567899999999999999999999999999999999
Q ss_pred eccCch
Q 004289 212 PSHLRG 217 (763)
Q Consensus 212 ~a~~k~ 217 (763)
+++++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 998765
No 165
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=3.1e-14 Score=130.10 Aligned_cols=77 Identities=14% Similarity=0.306 Sum_probs=69.9
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.....+|||+|||.++++++|+++|++||+|++|++. +..++||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3446799999999999999999999999999998873 45589999999999999999999999999999999999
Q ss_pred cc
Q 004289 213 SH 214 (763)
Q Consensus 213 a~ 214 (763)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 166
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=130.16 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=74.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCe----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDV----RTFY-RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I----~sv~-~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...++++|||+|||.++++++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34578999999999999999999999999988 4444 478999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887653
No 167
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.9e-14 Score=127.30 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=71.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||.++++++|+++|++||+|++|++ ++..++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34679999999999999999999999999999877 34457899999999999999999999999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 168
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=127.08 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=72.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCC-eEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh-cccCCCcccccccCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGD-VRTFYRASKHCGFVTISYYDIRAARNAMKSLQN-KLTRSGKLDIHYSIP 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~-I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng-~~l~Gr~L~V~~a~p 130 (763)
..+.++|||+|||.++++++|+++|++||+ |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|+|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 356789999999999999999999999999 666655 5789999999999999999999999 999999999999988
Q ss_pred CCCC
Q 004289 131 KDNP 134 (763)
Q Consensus 131 k~~~ 134 (763)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 169
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=123.94 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=71.4
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.....+|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999985 5699999999999999999999999999999999998764
No 170
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=9.5e-15 Score=130.46 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCC--eEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhc----ccCCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGD--VRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNK----LTRSG 121 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~--I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~----~l~Gr 121 (763)
+..-.||||+|||+++|+++|+++|++||. |..|++ ++++||||||+|.+.++|++|++.|++. .+.||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445679999999999999999999999995 456663 6889999999999999999999999997 48899
Q ss_pred cccccccCC
Q 004289 122 KLDIHYSIP 130 (763)
Q Consensus 122 ~L~V~~a~p 130 (763)
+|.|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 171
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=123.34 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=71.5
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.....+|||+|||.++++++|+++|++||.|++|++. ++||||+|.+.++|++|++.||+..|.|++|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999985 5699999999999999999999999999999999998764
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=134.98 Aligned_cols=84 Identities=15% Similarity=0.264 Sum_probs=75.7
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEE--EEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhc----c
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--FYR-----ASKHCGFVTISYYDIRAARNAMKSLQNK----L 117 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~s--v~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~----~ 117 (763)
.+..+.+.++|||+|||++++|++|+++|++||.|.. |++ +++++|||||+|.+. +|++|++.|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445567899999999999999999999999999966 663 688999999999999 999999999999 9
Q ss_pred cCCCcccccccCCCCC
Q 004289 118 TRSGKLDIHYSIPKDN 133 (763)
Q Consensus 118 l~Gr~L~V~~a~pk~~ 133 (763)
|.|++|+|.|+.++..
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999988754
No 173
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-14 Score=127.01 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=72.0
Q ss_pred CCCCCcEEEecCCCC-CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 52 DEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 52 ~e~psRtLfVgNLP~-~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
...++++|||+|||. ++++++|+++|++||+|..|++ .+|||||+|.+.++|++|++.|++..+.|++|+|.|+.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 346789999999998 9999999999999999999998 489999999999999999999999999999999999977
Q ss_pred CCCC
Q 004289 131 KDNP 134 (763)
Q Consensus 131 k~~~ 134 (763)
+...
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 174
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=130.05 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=69.8
Q ss_pred ccceeEEeccCC-CCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEEeccCc
Q 004289 140 NQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS--RYIAGKQIKLEPSHLR 216 (763)
Q Consensus 140 ~~~tLfVgNLp~-svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG--~~I~Gr~LkVe~a~~k 216 (763)
...+|||+|||+ ++++++|+++|++||+|++|++.. .++||||+|.+.++|++|++.|++ ..|.|++|+|.+++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 466999999999 999999999999999999999854 478999999999999999999986 4599999999999864
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 175
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-14 Score=131.72 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=72.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
++..++|||+|||.++++++|+++|++||.|..|.+ .+.+|||||+|.+.++|++|++.|++..|.|++|.|.|+...
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 345689999999999999999999999999999987 468999999999999999999999999999999999998653
No 176
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2e-14 Score=127.81 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=71.3
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
...+|||+|||.++++++|+++|++||.|++|++. ..++||||+|.+.++|++|++.|||..|.|++|+|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35699999999999999999999999999999985 57899999999999999999999999999999999999864
No 177
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=124.59 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=73.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhc--CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQY--GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskf--G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
...++++|||+|||+++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34567999999999999999999999999 99999986 57899999999999999999999999999999999998
Q ss_pred CCCC
Q 004289 130 PKDN 133 (763)
Q Consensus 130 pk~~ 133 (763)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 178
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=128.62 Aligned_cols=79 Identities=14% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe------CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~------tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
...+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445679999999999999999999999999 999985 4667999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 004289 126 HYSIPKD 132 (763)
Q Consensus 126 ~~a~pk~ 132 (763)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 179
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3.1e-14 Score=127.71 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999884 56789999999999999999999999999999999999
Q ss_pred ccC
Q 004289 127 YSI 129 (763)
Q Consensus 127 ~a~ 129 (763)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 180
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=127.31 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCC-eEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhh--hcccCCCccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGD-VRTFYRA------SKHCGFVTISYYDIRAARNAMKSLQ--NKLTRSGKLD 124 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~-I~sv~~t------gkskGfAFV~F~d~e~AekAl~~Ln--g~~l~Gr~L~ 124 (763)
.+.++|||+|||.++++++|+++|++||+ |..+.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999863 4789999999999999999999996 5899999999
Q ss_pred ccccCCCCCCC
Q 004289 125 IHYSIPKDNPS 135 (763)
Q Consensus 125 V~~a~pk~~~~ 135 (763)
|.|+.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 181
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=4.1e-14 Score=125.90 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=71.8
Q ss_pred CCCCCCcEEEecCCCC-CCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 51 NDEHPSRTLLLRKINS-NIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~-~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
....++++|||+|||. ++++++|+++|++||+|..+++ .+|||||+|.+.++|++|++.|++..+.|++|+|.|+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3456789999999998 9999999999999999999998 48999999999999999999999999999999999987
Q ss_pred CC
Q 004289 130 PK 131 (763)
Q Consensus 130 pk 131 (763)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 182
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=125.27 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=70.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeE--------eee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVke--------Iri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
....+|||+|||.++++++|+++|++||.|++ |++ ++..+|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 44679999999999999999999999999998 776 35668999999999999999999999999999
Q ss_pred eEEEEEecc
Q 004289 206 KQIKLEPSH 214 (763)
Q Consensus 206 r~LkVe~a~ 214 (763)
++|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999975
No 183
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=127.38 Aligned_cols=83 Identities=18% Similarity=0.357 Sum_probs=75.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE--eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~--~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
...+.++|||+|||.++++++|+++|+.|+.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 446789999999999999999999999998887776 367889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 004289 130 PKDNP 134 (763)
Q Consensus 130 pk~~~ 134 (763)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87653
No 184
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-14 Score=125.96 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=72.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|||.++++++|+++|++||+|+.|++.. .++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4567999999999999999999999999999998853 58999999999999999999999999999999999998754
No 185
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=128.49 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=71.7
Q ss_pred cccceeEEeccCCCCCHHHHH---HHhcccCceeEeeecC--------CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 139 INQGTLVVFNLDSSVSNDELH---HIFGVYGEIKEIRETP--------QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLr---elFs~fGeVkeIrit~--------~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
....+|||+|||+++++++|+ ++|++||+|.+|++.. ..+|||||+|.+.++|++|++.|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 446699999999999999999 9999999999988732 34589999999999999999999999999999
Q ss_pred EEEEeccCch
Q 004289 208 IKLEPSHLRG 217 (763)
Q Consensus 208 LkVe~a~~k~ 217 (763)
|+|++++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 186
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.2e-14 Score=126.50 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=72.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhccc--------C
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLT--------R 119 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l--------~ 119 (763)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+++.| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456789999999999999999999999999999885 567899999999999999999999999999 5
Q ss_pred CCcccccccCCC
Q 004289 120 SGKLDIHYSIPK 131 (763)
Q Consensus 120 Gr~L~V~~a~pk 131 (763)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 777888888764
No 187
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=121.48 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.3
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEEecc
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALREL-NSRYIAGKQIKLEPSH 214 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~L-nG~~I~Gr~LkVe~a~ 214 (763)
+....+|||+|||.++++++|+++|++||.|.+|++.. .++||||+|.+.++|++|++.| ++..+.|++|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567999999999999999999999999999998854 5899999999999999999999 9999999999999985
No 188
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=5.8e-14 Score=124.96 Aligned_cols=76 Identities=28% Similarity=0.378 Sum_probs=71.1
Q ss_pred cccceeEEeccCC-CCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~-svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|||. ++++++|+++|+.||.|.+|++ .+|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 4467999999998 9999999999999999999998 48999999999999999999999999999999999998753
No 189
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=3.4e-14 Score=127.11 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=72.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchh
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
.+..+|||+|||.++++++|+++|++||.|+.|++. ++||||+|.+.++|++|++.||+..|.|++|+|++++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 446799999999999999999999999999999884 67999999999999999999999999999999999998764
Q ss_pred H
Q 004289 219 R 219 (763)
Q Consensus 219 r 219 (763)
+
T Consensus 86 ~ 86 (103)
T 2dgu_A 86 K 86 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 190
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=128.59 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=73.0
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCcee--------Eeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIK--------EIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIA 204 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVk--------eIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~ 204 (763)
.....+|||+|||.++++++|+++|++||.|+ .|++ ++..++||||+|.+.++|++||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999998 5665 3556899999999999999999999999999
Q ss_pred CeEEEEEeccCchh
Q 004289 205 GKQIKLEPSHLRGL 218 (763)
Q Consensus 205 Gr~LkVe~a~~k~~ 218 (763)
|++|+|++++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999998653
No 191
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.2e-14 Score=124.89 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=70.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|+.||.|+.+++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34569999999999999999999999999976543 4567899999999999999999999999999999999998
Q ss_pred cCc
Q 004289 214 HLR 216 (763)
Q Consensus 214 ~~k 216 (763)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 192
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=128.39 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=72.3
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
...+|||+|||..+++++|+++|++||.|..|++... ++||||+|.+.++|++|++.|+|..|.|++|+|+|++++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 4569999999999999999999999999999998554 8999999999999999999999999999999999999865
No 193
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=124.31 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=71.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhccc--CceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVY--GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~f--GeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
....+|||+|||..+++++|+++|++| |.|..|++ .++||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 446799999999999999999999999 99999987 4789999999999999999999999999999999999976
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 90 ~ 90 (99)
T 2cpd_A 90 D 90 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 194
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=1.4e-14 Score=129.43 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=72.0
Q ss_pred cceeEEeccCC------CCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-eEE
Q 004289 141 QGTLVVFNLDS------SVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQI 208 (763)
Q Consensus 141 ~~tLfVgNLp~------svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G-r~L 208 (763)
..+|||+|||. ++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 9999999999999999999887 36778999999999999999999999999999 999
Q ss_pred EEEeccCch
Q 004289 209 KLEPSHLRG 217 (763)
Q Consensus 209 kVe~a~~k~ 217 (763)
+|.++.+++
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 195
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=126.31 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=71.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|||.++++++|+++|+.||.|....++...++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3456999999999999999999999999996323356779999999999999999999999999999999999998764
No 196
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=127.84 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=71.5
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-----eEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~G-----r~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|+.|++... +||||+|.+.++|++||+.||+.+|.| ++|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 34569999999999999999999999999999998554 999999999999999999999999999 99999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 9865
No 197
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.8e-14 Score=123.42 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...+.++|||+|| ++++++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4457799999996 9999999999999999999998 688999999999999999999999999999999999999876
Q ss_pred CCC
Q 004289 132 DNP 134 (763)
Q Consensus 132 ~~~ 134 (763)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 198
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.5e-14 Score=124.43 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCcEEEecCCCCCCCHHHHH----HHHhhcCCeEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 55 PSRTLLLRKINSNIEDSELK----ALFEQYGDVRTFYRA--SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~----~lFskfG~I~sv~~t--gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
..++|||+|||.++++++|+ ++|++||+|..|++. ...+|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45799999999999999999 999999999999963 222899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004289 129 IPKDNP 134 (763)
Q Consensus 129 ~pk~~~ 134 (763)
.++..+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 199
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=2.9e-14 Score=129.59 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=72.9
Q ss_pred CCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 50 LNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 50 p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
...+.+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|+|.|+.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456678999999999999999999999999999999984 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 004289 130 PKDN 133 (763)
Q Consensus 130 pk~~ 133 (763)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7543
No 200
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=126.42 Aligned_cols=78 Identities=22% Similarity=0.240 Sum_probs=71.6
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit------~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
....+|||+|||.++++++|+++|+.|| |++|++. +..++||||+|.+.++|++|| .||+..|.|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4467999999999999999999999999 9998873 566899999999999999999 9999999999999999
Q ss_pred ccCchh
Q 004289 213 SHLRGL 218 (763)
Q Consensus 213 a~~k~~ 218 (763)
++++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 998754
No 201
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=3.4e-14 Score=125.04 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=73.8
Q ss_pred cccceeEEeccCCCCCHHHHH----HHhcccCceeEeeec--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRET--PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLr----elFs~fGeVkeIrit--~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
....+|||+|||.++++++|+ ++|++||.|..|++. +..+|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446799999999999999999 999999999999873 35689999999999999999999999999999999999
Q ss_pred ccCchhH
Q 004289 213 SHLRGLR 219 (763)
Q Consensus 213 a~~k~~r 219 (763)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987643
No 202
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=3.9e-14 Score=133.85 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=71.4
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~-aFVeF~d~esA~kAL~~LnG~~I~G--r~LkVe~a~~k~ 217 (763)
...|||+||++.+|+++|+++|++||+|++|++..+.+++ |||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 3489999999999999999999999999999886666787 9999999999999999999999998 999999999764
No 203
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=125.60 Aligned_cols=80 Identities=31% Similarity=0.368 Sum_probs=72.1
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
.....+|||+|||.++++++|+++|++||.|.-++. ++..++||||+|.+.++|++|++.||+..|.|++|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345679999999999999999999999999955443 5667899999999999999999999999999999999999876
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 204
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=3.5e-14 Score=122.82 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=70.2
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
..++|||+|||.++++++|+++|+.||.|..|++ ++..++||||+|.+.++|++|+ .|||..|.|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4569999999999999999999999999999876 4556899999999999999999 899999999999999998
Q ss_pred Cc
Q 004289 215 LR 216 (763)
Q Consensus 215 ~k 216 (763)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 205
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.8e-14 Score=124.42 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=73.3
Q ss_pred cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 137 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 137 ~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
......+|||+|||.++++++|+++|+.|+.|.-++. ++..++||||+|.+.++|++||+.||+..|.|++|+|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3455679999999999999999999999988776653 56778999999999999999999999999999999999999
Q ss_pred Cchh
Q 004289 215 LRGL 218 (763)
Q Consensus 215 ~k~~ 218 (763)
++.+
T Consensus 91 ~~~~ 94 (102)
T 2fc8_A 91 PKGE 94 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 206
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=4.3e-14 Score=132.80 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=73.4
Q ss_pred cccceeEEeccCCCCCHHHHH----HHhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELH----HIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLr----elFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
....+|||+|||+.+++++|+ ++|++||+|.+|.+ ++..+|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 345699999999999999876 69999999999877 457799999999999999999999999999999999999
Q ss_pred ccCchhH
Q 004289 213 SHLRGLR 219 (763)
Q Consensus 213 a~~k~~r 219 (763)
++.+...
T Consensus 107 a~~~~~~ 113 (127)
T 2a3j_A 107 SETPQSQ 113 (127)
T ss_dssp CCCCCHH
T ss_pred ccCcchh
Confidence 9987654
No 207
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.9e-14 Score=135.95 Aligned_cols=88 Identities=22% Similarity=0.386 Sum_probs=78.9
Q ss_pred CCCCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 47 GEHLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 47 G~~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
+..+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344555667899999999999999999999999999999985 577899999999999999999999999999999
Q ss_pred cccccccCCCCCC
Q 004289 122 KLDIHYSIPKDNP 134 (763)
Q Consensus 122 ~L~V~~a~pk~~~ 134 (763)
+|+|.|+.++...
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 208
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=3.7e-14 Score=122.68 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=70.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|+ .|++..+.|++|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999874 6778999999999999999999 999999999999999987
Q ss_pred CC
Q 004289 130 PK 131 (763)
Q Consensus 130 pk 131 (763)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=5.3e-14 Score=134.19 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=76.1
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
....+.++|||+|||+++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..|.|++|+|.|+.+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34556799999999999999999999999999999998777899999999999999999999999999999999999987
Q ss_pred CC
Q 004289 131 KD 132 (763)
Q Consensus 131 k~ 132 (763)
+.
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 210
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=125.05 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=70.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCc-eeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC-CeeCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRETPQKIHQKYIEFYDTRAAEAALRELNS-RYIAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGe-VkeIrit~~skG~aFVeF~d~esA~kAL~~LnG-~~I~Gr~LkVe~a~~k 216 (763)
....+|||+|||.++++++|+++|++||. |..+.+ .+++||||+|.+.++|++|++.||| ..|.|++|+|++++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 34679999999999999999999999999 666655 3689999999999999999999999 9999999999999976
Q ss_pred hh
Q 004289 217 GL 218 (763)
Q Consensus 217 ~~ 218 (763)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 211
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=6.5e-14 Score=125.09 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=70.9
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.....+|||+|||.++++++|+++|+.|| |+.|++ ++..+|||||+|.+.++|++|+ .||+..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 999877 3566899999999999999999 8999999999999999
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99765
No 212
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=3.8e-14 Score=132.96 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=72.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|+.|++ ++..+|||||+|.+.++|++||+.|||..|.|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44679999999999999999999999999999887 3467899999999999999999999999999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 213
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=129.89 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCCCcEEEecCCCCCCCHHHHH---HHHhhcCCeEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhhhcccCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELK---ALFEQYGDVRTFYRA--------SKHCGFVTISYYDIRAARNAMKSLQNKLTRS 120 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~---~lFskfG~I~sv~~t--------gkskGfAFV~F~d~e~AekAl~~Lng~~l~G 120 (763)
...+.++|||+|||+++++++|+ ++|++||+|..|++. .+++|||||+|.+.++|++|++.|++..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 999999999999851 2456999999999999999999999999999
Q ss_pred CcccccccCCCC
Q 004289 121 GKLDIHYSIPKD 132 (763)
Q Consensus 121 r~L~V~~a~pk~ 132 (763)
++|+|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 214
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.49 E-value=8.3e-14 Score=124.93 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=70.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||..+++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 44679999999999999999999999999999876 34568899999999999999999999999999999999986
No 215
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=5e-14 Score=126.84 Aligned_cols=80 Identities=10% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCCCC------CHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC-
Q 004289 52 DEHPSRTLLLRKINSNI------EDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG- 121 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~v------tEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr- 121 (763)
....+++|||+|||..+ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44557899999999999 78999999999999999985 567899999999999999999999999999999
Q ss_pred cccccccCCC
Q 004289 122 KLDIHYSIPK 131 (763)
Q Consensus 122 ~L~V~~a~pk 131 (763)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 216
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=121.30 Aligned_cols=70 Identities=11% Similarity=0.265 Sum_probs=65.5
Q ss_pred CcEEEecCCCCCC------CHHHHHHHHhhcCCeEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC-cccc
Q 004289 56 SRTLLLRKINSNI------EDSELKALFEQYGDVRTFYR---ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG-KLDI 125 (763)
Q Consensus 56 sRtLfVgNLP~~v------tEeeL~~lFskfG~I~sv~~---tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr-~L~V 125 (763)
+++|||+|||.++ ++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 77999999999999999985 567899999999999999999999999999999 8887
No 217
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=123.89 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..|.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567789999999999999999999999999999884 57789999999999999999998 467899999999
Q ss_pred cccCCCCCC
Q 004289 126 HYSIPKDNP 134 (763)
Q Consensus 126 ~~a~pk~~~ 134 (763)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887654
No 218
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.49 E-value=1.3e-14 Score=133.72 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=70.7
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...+|||+|||.++++++|+++|++||+|++|++ ++..+|||||+|.+.++|++|+ .|||..|.|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4569999999999999999999999999999876 4566899999999999999999 799999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 219
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=128.76 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=72.4
Q ss_pred cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 137 KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 137 ~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
.+....+|||+|||.++++++|+++|++||.|++|++ ++..++||||+|.+.++|++||+.|++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3455679999999999999999999999999999887 345688999999999999999999998 8999999999
Q ss_pred eccCch
Q 004289 212 PSHLRG 217 (763)
Q Consensus 212 ~a~~k~ 217 (763)
++.++.
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 998654
No 220
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.1e-14 Score=126.82 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=71.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.....++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999886432 357789999999999999999999999999999999999
Q ss_pred ccCCC
Q 004289 127 YSIPK 131 (763)
Q Consensus 127 ~a~pk 131 (763)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98653
No 221
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=5.8e-14 Score=134.74 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=75.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999986 57789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 004289 127 YSIPKDN 133 (763)
Q Consensus 127 ~a~pk~~ 133 (763)
|+.++..
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987554
No 222
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=7.2e-14 Score=134.09 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=74.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|++||+|+.|++ ++..++||||+|.+.++|++||+.||+..|.|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999887 4567899999999999999999999999999999999999
Q ss_pred cCchhH
Q 004289 214 HLRGLR 219 (763)
Q Consensus 214 ~~k~~r 219 (763)
++...+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 223
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=130.39 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=71.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999985 46789999999999999999999999999999999998
Q ss_pred cc
Q 004289 127 YS 128 (763)
Q Consensus 127 ~a 128 (763)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 224
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.49 E-value=4.4e-14 Score=123.89 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=68.3
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...+|||+|||.++++++|+++|++||.|+.+++ ++..++||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4579999999999999999999999999976554 45678999999999999999999999999999999999986
Q ss_pred C
Q 004289 215 L 215 (763)
Q Consensus 215 ~ 215 (763)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 225
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.49 E-value=4.9e-14 Score=129.52 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=72.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||.++++++|+++|++||.|+.|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34569999999999999999999999999999887 44567999999999999999999999999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 226
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.49 E-value=1.5e-14 Score=126.87 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 344569999999999999999999999999886443 256789999999999999999999999999999999999
Q ss_pred ccCC
Q 004289 127 YSIP 130 (763)
Q Consensus 127 ~a~p 130 (763)
++.+
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 227
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=3.4e-14 Score=130.55 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=71.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcC-CeEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG-~I~sv~~-tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...++|||+|||+++++++|+++|++|| +|..+++ ..+++|||||+|.+.++|++|++.|+|..|.|++|+|.++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3467999999999999999999999999 9999987 4678999999999999999999999999999999999998643
No 228
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.1e-14 Score=128.52 Aligned_cols=80 Identities=25% Similarity=0.281 Sum_probs=72.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCcee----Eeee-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIK----EIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVk----eIri-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|+.||.|. .+++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4467999999999999999999999999984 4443 6778999999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98753
No 229
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.48 E-value=9.4e-14 Score=128.31 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
...++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456789999999999999999999999999999885 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004289 128 SIPKDNP 134 (763)
Q Consensus 128 a~pk~~~ 134 (763)
+.++...
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 230
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.48 E-value=9.7e-14 Score=133.00 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=76.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455789999999999999999999999999999984 67799999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
|+.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876543
No 231
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.9e-14 Score=125.29 Aligned_cols=77 Identities=27% Similarity=0.352 Sum_probs=71.4
Q ss_pred cccceeEEeccCC-CCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDS-SVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~-svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|||. .+++++|+++|++||.|.+|++ .++||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4467999999998 9999999999999999999998 48999999999999999999999999999999999998765
Q ss_pred h
Q 004289 218 L 218 (763)
Q Consensus 218 ~ 218 (763)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 232
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=124.92 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=72.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCcee-Eeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE----E
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIK-EIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ----I 208 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVk-eIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~----L 208 (763)
....+|||+|||.++++++|+++|++||+|. .|++ ++..++||||+|.+.++|++|++.|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3467999999999999999999999999999 8876 4566799999999999999999999999999999 9
Q ss_pred EEEeccCch
Q 004289 209 KLEPSHLRG 217 (763)
Q Consensus 209 kVe~a~~k~ 217 (763)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998754
No 233
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.8e-14 Score=122.50 Aligned_cols=79 Identities=9% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
.....++|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44567899999999999999999999999 8988874 57789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 004289 128 SIPKD 132 (763)
Q Consensus 128 a~pk~ 132 (763)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 234
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-14 Score=126.82 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=73.7
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcc-cCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGV-YGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRY-IAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~-fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~-I~Gr~LkVe~ 212 (763)
....+|||+|||.++++++|+++|+. ||.|.+|++ ++..++||||+|.+.++|.+|++.|++.. |.|++|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34569999999999999999999999 999999887 45578999999999999999999999999 9999999999
Q ss_pred ccCchhH
Q 004289 213 SHLRGLR 219 (763)
Q Consensus 213 a~~k~~r 219 (763)
++++..+
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9877643
No 235
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=5e-14 Score=130.20 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=73.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||..+++++|+++|++||.|+.|++ ++..++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34569999999999999999999999999999887 4555899999999999999999999999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
.++..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 87653
No 236
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=5.2e-14 Score=121.58 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=69.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.+.+.++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..|.|++|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999984 57789999999999999999995 57888999999998
Q ss_pred cc
Q 004289 127 YS 128 (763)
Q Consensus 127 ~a 128 (763)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 237
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=127.42 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=71.6
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
.+|||+|||.++++++|+++|++||+|++|++....++||||+|.+.++|++|++.|+|..+.|++|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 3799999999999999999999999999999865579999999999999999999999999999999999999765
No 238
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=127.93 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=71.0
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
...+|||+|||.++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..|.|++|+|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35699999999999999999999999999999875 47899999999999999999999999999999999999764
No 239
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=6.7e-14 Score=126.05 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=71.0
Q ss_pred cccceeEEeccCCCC------CHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-EE
Q 004289 139 INQGTLVVFNLDSSV------SNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QI 208 (763)
Q Consensus 139 ~~~~tLfVgNLp~sv------TeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr-~L 208 (763)
...++|||+|||..+ ++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 345699999999999 78999999999999999887 446689999999999999999999999999998 99
Q ss_pred EEEeccCc
Q 004289 209 KLEPSHLR 216 (763)
Q Consensus 209 kVe~a~~k 216 (763)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999754
No 240
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.6e-14 Score=128.71 Aligned_cols=82 Identities=12% Similarity=0.233 Sum_probs=73.2
Q ss_pred ccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 004289 136 EKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210 (763)
Q Consensus 136 ~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkV 210 (763)
.......+|||+|||.++++++|+++|+.||.|+.|++ ++..+|||||+|.+.++|++||+. ++..|.|++|+|
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 33445679999999999999999999999999999887 345689999999999999999997 999999999999
Q ss_pred EeccCchh
Q 004289 211 EPSHLRGL 218 (763)
Q Consensus 211 e~a~~k~~ 218 (763)
++++++..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99998753
No 241
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-14 Score=130.49 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
+...++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999986 3788999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 004289 128 SIPKD 132 (763)
Q Consensus 128 a~pk~ 132 (763)
+.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87643
No 242
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.48 E-value=6e-14 Score=127.45 Aligned_cols=81 Identities=14% Similarity=0.292 Sum_probs=70.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..|.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4456789999999999999999999999999999985 4778999999999999999999876 589999999999
Q ss_pred ccCCCCC
Q 004289 127 YSIPKDN 133 (763)
Q Consensus 127 ~a~pk~~ 133 (763)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9988754
No 243
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=124.53 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEE-EEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT-FYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~s-v~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.....++|||+|||+++++++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|++. ++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 664 678999999999999999999987 9999999999999
Q ss_pred ccCCCC
Q 004289 127 YSIPKD 132 (763)
Q Consensus 127 ~a~pk~ 132 (763)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 887654
No 244
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.47 E-value=2e-13 Score=126.12 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=72.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||..+++++|+++|+.||+|++|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34569999999999999999999999999999887 34568999999999999999999999999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 245
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=8.7e-14 Score=134.91 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=73.3
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccC--ceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fG--eVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
..+|||+|||.++++++|+++|+.|| +|.+|++ ++..+|||||+|.+.++|++||+.|||..|.|++|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 46999999999999999999999999 9999876 5677899999999999999999999999999999999999
Q ss_pred cCchhHH
Q 004289 214 HLRGLRK 220 (763)
Q Consensus 214 ~~k~~rr 220 (763)
.++..++
T Consensus 135 ~~~~~~~ 141 (156)
T 3n9u_C 135 TRQNLSQ 141 (156)
T ss_dssp CHHHHHH
T ss_pred CCCcchh
Confidence 9876443
No 246
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=4.8e-14 Score=136.74 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcC--CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYG--DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG--~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..++|||+|||+++++++|+++|++|| +|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999884 688999999999999999999999999999999999999
Q ss_pred cCCC
Q 004289 128 SIPK 131 (763)
Q Consensus 128 a~pk 131 (763)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 247
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=125.94 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=72.7
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
+....+|||+|||.++++++|+++|++||+|++|++ ++..++||||+|.+.++|++||+. ++..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345679999999999999999999999999999876 345678999999999999999998 99999999999999
Q ss_pred ccCchh
Q 004289 213 SHLRGL 218 (763)
Q Consensus 213 a~~k~~ 218 (763)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 998763
No 248
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=9.2e-14 Score=126.37 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=72.7
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee--cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE--TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri--t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
...+|||+|||..+++++|+++|+.||.|..|++ .+..+|||||+|.+.++|.+|++.|||..+.|+.|+|.+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3569999999999999999999999999999887 45668999999999999999999999999999999999998754
Q ss_pred h
Q 004289 218 L 218 (763)
Q Consensus 218 ~ 218 (763)
.
T Consensus 87 ~ 87 (115)
T 3lqv_A 87 A 87 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 249
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=120.79 Aligned_cols=79 Identities=23% Similarity=0.299 Sum_probs=71.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-e-CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-R-ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-~-tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...++|||+|||+++++++|+++|++||+|..++ + ..+..|.|||+|.+.++|++|++.|++..|.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4568999999999999999999999999999994 3 4445667999999999999999999999999999999999887
Q ss_pred C
Q 004289 132 D 132 (763)
Q Consensus 132 ~ 132 (763)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 250
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.47 E-value=1.5e-13 Score=118.70 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=67.8
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.....+|||+|||.++++++|+++|++||.|++|++ ++..+|||||+|.+.++|++|++ +++..|.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999887 35668999999999999999996 588899999999987
Q ss_pred c
Q 004289 213 S 213 (763)
Q Consensus 213 a 213 (763)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 251
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.9e-13 Score=120.93 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=70.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
....+|||+|| ++++++|+++|++||+|.+|++ ...++||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 34569999996 8999999999999999999998 4678999999999999999999999999999999999998765
No 252
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.3e-14 Score=126.27 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
+.+.++|||+|||+++|+++|+++|++||+|..|.+ .++++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999985 36789999999999999999998 8999999999999876
Q ss_pred CC
Q 004289 129 IP 130 (763)
Q Consensus 129 ~p 130 (763)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 253
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=7.8e-14 Score=136.67 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=70.7
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeeec-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEeccCch
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-PQKIHQKYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 217 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-~~skG~aFVeF~d~esA~kAL~~LnG~~I~G--r~LkVe~a~~k~ 217 (763)
..+|||+||++.+++++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||.+|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4589999999999999999999999999999884 4457899999999999999999999999976 999999999864
No 254
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=3.9e-14 Score=125.97 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|++|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999999776511 357899999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 004289 129 IPKDN 133 (763)
Q Consensus 129 ~pk~~ 133 (763)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 255
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.3e-14 Score=125.90 Aligned_cols=80 Identities=6% Similarity=0.074 Sum_probs=72.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. +++..|.|+.|+|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 456799999999999999999999999999998873 5578999999999999999999 99999999999999988
Q ss_pred CchhH
Q 004289 215 LRGLR 219 (763)
Q Consensus 215 ~k~~r 219 (763)
...++
T Consensus 88 ~~~~~ 92 (103)
T 1s79_A 88 DYFAK 92 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
No 256
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=1.1e-13 Score=120.35 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=70.0
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
...+|||+|||.++++++|+++|++| +|++|++. ..+|||||+|.+.++|++|++.|||..+.|++|+|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35689999999999999999999999 99999884 78999999999999999999999999999999999998754
No 257
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=1.8e-13 Score=134.04 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=72.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeC-CCcccEEEEEeCCHHHHHHHHHHhhhcccCC--CcccccccC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRA-SKHCGFVTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSI 129 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~t-gkskGfAFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~a~ 129 (763)
+....+|||+||++.+++++|+++|++||+|+.|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3344589999999999999999999999999999963 4468899999999999999999999999965 999999999
Q ss_pred CCCCC
Q 004289 130 PKDNP 134 (763)
Q Consensus 130 pk~~~ 134 (763)
++...
T Consensus 123 ~~~l~ 127 (164)
T 1sjr_A 123 LTSLN 127 (164)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 87643
No 258
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=123.96 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=70.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCee--------CCe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYI--------AGK 206 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I--------~Gr 206 (763)
....+|||+|||.++++++|+++|+.||+|..|++ ++..++||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 44679999999999999999999999999999887 345688999999999999999999999999 578
Q ss_pred EEEEEeccCc
Q 004289 207 QIKLEPSHLR 216 (763)
Q Consensus 207 ~LkVe~a~~k 216 (763)
+|+|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 259
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.4e-14 Score=124.51 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=67.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.+ |++|++.|++..+.|++|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999985 4778999999999999 99999999999999999999999876
Q ss_pred CC
Q 004289 132 DN 133 (763)
Q Consensus 132 ~~ 133 (763)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 260
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1e-13 Score=128.23 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=71.0
Q ss_pred CCCCCcEEEe--cCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhccc-----CCCccc
Q 004289 52 DEHPSRTLLL--RKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT-----RSGKLD 124 (763)
Q Consensus 52 ~e~psRtLfV--gNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l-----~Gr~L~ 124 (763)
...|+++||| +||+.+++|++|+++|++||+|..|.+. ..+|||||+|.+.++|++|++.|+|+.+ .+++|.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4467899999 7799999999999999999999999873 4689999999999999999999999988 688999
Q ss_pred ccccCCC
Q 004289 125 IHYSIPK 131 (763)
Q Consensus 125 V~~a~pk 131 (763)
|.|+...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9987643
No 261
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=4.7e-14 Score=122.80 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...++|||+|||+++++++|+++|++| +|..+++. +++|||||+|.+.++|++|++.|++..+.|++|+|.|+..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 457899999999999999999999999 99999874 89999999999999999999999999999999999998543
No 262
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.46 E-value=1.1e-13 Score=125.82 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=69.8
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.....+|||+|||.++++++|+++|+.||.|.+|++ ++..+|||||+|.+.++|++|++.+ +..|.|++|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999887 3556899999999999999999976 5999999999999
Q ss_pred ccCchh
Q 004289 213 SHLRGL 218 (763)
Q Consensus 213 a~~k~~ 218 (763)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 998754
No 263
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=119.55 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=70.2
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEee-e-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR-E-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIr-i-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
...+|||+|||.++++++|+++|+.||.|++|+ + .....+.|||+|.+.++|.+|++.|||..|.|++|+|+++.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 456999999999999999999999999999995 5 33344569999999999999999999999999999999999874
No 264
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=8.2e-14 Score=117.04 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=65.2
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |++..|.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999887 45568999999999999999998 9999999999999875
No 265
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=126.71 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=68.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||..+++++|+++|++||+|+.|++ ++..+|||||+|.+.++|++|++.|||..|.|++|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45679999999999999999999999999999887 3456899999999999999999999999999999999985
No 266
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=6.2e-14 Score=117.78 Aligned_cols=70 Identities=14% Similarity=0.286 Sum_probs=65.5
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
+|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999984 57789999999999999999997 9999999999999875
No 267
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=132.19 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=71.7
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeE--eee-----cCCcccEEEEEEcCHHHHHHHHHHhCCC----eeCCe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSR----YIAGK 206 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVke--Iri-----t~~skG~aFVeF~d~esA~kAL~~LnG~----~I~Gr 206 (763)
+....+|||+|||+++++++|+++|++||.|.. |++ ++.+||||||+|.+. +|.+|++.|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 665 566789999999999 999999999999 99999
Q ss_pred EEEEEeccCch
Q 004289 207 QIKLEPSHLRG 217 (763)
Q Consensus 207 ~LkVe~a~~k~ 217 (763)
+|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 268
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=7.8e-14 Score=128.57 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=70.3
Q ss_pred cccceeEEeccCCC-CCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEEEeccC
Q 004289 139 INQGTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKLEPSHL 215 (763)
Q Consensus 139 ~~~~tLfVgNLp~s-vTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~Ln--G~~I~Gr~LkVe~a~~ 215 (763)
....+|||+|||++ +++++|+++|++||+|++|++. ..|+||||+|.+.++|++|++.|+ +..|.|++|+|.+++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 34669999999998 9999999999999999999984 468999999999999999999886 4569999999999986
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 269
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=118.89 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||.++++++|+++|+.| .|.+|++ ++..+|||||+|.+.++|++|++ |||..|.|++|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 345699999999999999999999999 9999876 45568899999999999999999 99999999999999998
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 270
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=125.82 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=73.3
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCce-eEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEI-KEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeV-keIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||+++++++|+++|+.||.| ..|++ ++..+|||||+|.+.++|++||+. |+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 446799999999999999999999999999 77776 356789999999999999999986 999999999999999
Q ss_pred cCchhHHH
Q 004289 214 HLRGLRKC 221 (763)
Q Consensus 214 ~~k~~rr~ 221 (763)
.++..++.
T Consensus 92 ~~~~~~~~ 99 (114)
T 2cpy_A 92 TLEDMREI 99 (114)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98776553
No 271
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=124.28 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=71.9
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCc-eeEeeec------CCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEE
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGE-IKEIRET------PQKIHQKYIEFYDTRAAEAALRELN--SRYIAGKQIKL 210 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGe-VkeIrit------~~skG~aFVeF~d~esA~kAL~~Ln--G~~I~Gr~LkV 210 (763)
...+|||+|||.++++++|+++|+.||. |.+|++. +..+|||||+|.+.++|++|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4569999999999999999999999998 9998874 3678999999999999999999996 58999999999
Q ss_pred EeccCchh
Q 004289 211 EPSHLRGL 218 (763)
Q Consensus 211 e~a~~k~~ 218 (763)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998764
No 272
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.1e-14 Score=121.71 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=69.1
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...+|||+|||.++++++|+++|++||.|+.|++ ++..+|||||+|.+.++|++|++.|||..|.|+.|++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4569999999999999999999999999999886 34558999999999999999999999999999999988765
Q ss_pred C
Q 004289 215 L 215 (763)
Q Consensus 215 ~ 215 (763)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 273
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=122.08 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCcE-EEecCCCCCCCHHH----HHHHHhhc-CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 54 HPSRT-LLLRKINSNIEDSE----LKALFEQY-GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 54 ~psRt-LfVgNLP~~vtEee----L~~lFskf-G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
.|+.| |||+|||.++++++ |+++|++| |+|..| ++ |+|||+|.++++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 46777 99999999999998 55899999 599998 23 9999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 004289 128 SIPKDNP 134 (763)
Q Consensus 128 a~pk~~~ 134 (763)
++.+.+.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9887664
No 274
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=3e-13 Score=126.80 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=68.1
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEeccCch
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQ-KYIEFYDTRAAEAALRELNSRYIAG--KQIKLEPSHLRG 217 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~-aFVeF~d~esA~kAL~~LnG~~I~G--r~LkVe~a~~k~ 217 (763)
.|||+||++.+++++|+++|++||+|++|++..+ .|+ |||+|.+.++|.+|+++|||.+|.| ++|+|.+++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6789999999999999999999999999988543 585 9999999999999999999999987 699999999875
No 275
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=1.3e-13 Score=130.38 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=71.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhhhcccCC--CcccccccCCCC
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHYSIPKD 132 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGf-AFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~a~pk~ 132 (763)
--.|||+||++.+|+++|+++|++||+|..|++..+.+|| |||+|.+.++|++|++.|+|..|.+ +.|+|+|++++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 3477899999999999999999999999999976677888 9999999999999999999999988 899999998875
Q ss_pred C
Q 004289 133 N 133 (763)
Q Consensus 133 ~ 133 (763)
-
T Consensus 108 l 108 (130)
T 3zzy_A 108 L 108 (130)
T ss_dssp C
T ss_pred e
Confidence 4
No 276
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=4.1e-14 Score=123.02 Aligned_cols=75 Identities=15% Similarity=0.337 Sum_probs=67.0
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeec-----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET-----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit-----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
++|||+|||.++++++|+++|++||+|++|++. +.++|||||+|.+.+ |.+|++.|||..+.|++|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999998873 556899999999999 99999999999999999999999876
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.9e-13 Score=118.23 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKD 132 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~ 132 (763)
....++|||+|||.++++++|+++|++||+|..|........||||+|.+.++|++|++ |++..|.|+.|+|.++.++.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34568999999999999999999999999999985432222299999999999999999 99999999999999987765
Q ss_pred CC
Q 004289 133 NP 134 (763)
Q Consensus 133 ~~ 134 (763)
..
T Consensus 84 ~~ 85 (94)
T 2e5g_A 84 FQ 85 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 278
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.3e-13 Score=119.55 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=70.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||.++++++|+++|+.||.|+.|++ ++..+|||||+|.+.++|++||+ ++..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 45679999999999999999999999999999876 35668999999999999999998 578999999999999
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9865
No 279
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=126.09 Aligned_cols=80 Identities=13% Similarity=0.311 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|++|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999998884 467899999999999999999987 999999999999999
Q ss_pred CCCCCC
Q 004289 129 IPKDNP 134 (763)
Q Consensus 129 ~pk~~~ 134 (763)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887654
No 280
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.44 E-value=1.8e-13 Score=132.95 Aligned_cols=85 Identities=14% Similarity=0.278 Sum_probs=75.2
Q ss_pred CCCCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcc
Q 004289 49 HLNDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKL 123 (763)
Q Consensus 49 ~p~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L 123 (763)
.+....+.++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++||+.|++..|.|++|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3444566789999999999999999999999999999985 56689999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 004289 124 DIHYSIPKDN 133 (763)
Q Consensus 124 ~V~~a~pk~~ 133 (763)
.|.|+.++..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999987654
No 281
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=8.4e-14 Score=124.16 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=68.7
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeec------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit------~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
....+|||+|||.++++++|+++|+.|| |++|++. +..+|||||+|.+.++|.+|+ .|+|..|.|++|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3467999999999999999999999999 9998873 445899999999999999999 8999999999999999
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98763
No 282
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=5.8e-14 Score=124.82 Aligned_cols=78 Identities=24% Similarity=0.243 Sum_probs=69.9
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEee----ecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR----ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIr----it~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
...+|||+|||.++++++|+++|+.||.|..+. .++.++|||||+|.+.++|++|++ |||..|.|++|+|+++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 456999999999999999999999999987621 256678999999999999999998 999999999999999998
Q ss_pred chh
Q 004289 216 RGL 218 (763)
Q Consensus 216 k~~ 218 (763)
+..
T Consensus 95 ~~~ 97 (101)
T 1fj7_A 95 RDG 97 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.4e-14 Score=129.71 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=71.3
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEee-e----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIR-E----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIr-i----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
...+|||+|||+++++++|+++|+.||.|..+. + ++..+|||||+|.+.++|++||+ ||+..|.|++|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 456999999999999999999999999997632 2 56778999999999999999999 99999999999999999
Q ss_pred CchhHH
Q 004289 215 LRGLRK 220 (763)
Q Consensus 215 ~k~~rr 220 (763)
+++..+
T Consensus 103 ~~~~~~ 108 (124)
T 1wel_A 103 KKGMLE 108 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877543
No 284
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=2.5e-13 Score=125.18 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=71.7
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCc---eeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGe---VkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
....+|||+|||+++|+++|+++|+.||. |+.|++ .++.+|||||+|.+.++|++||+ ||+..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34568999999999999999999999999 777776 35568999999999999999999 99999999999999
Q ss_pred eccCchhHH
Q 004289 212 PSHLRGLRK 220 (763)
Q Consensus 212 ~a~~k~~rr 220 (763)
++.+++...
T Consensus 94 ~a~~~~~~~ 102 (118)
T 2db1_A 94 KSHRTEMDW 102 (118)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 998765433
No 285
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=6e-14 Score=118.10 Aligned_cols=71 Identities=14% Similarity=0.303 Sum_probs=66.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.++ ..+.|++|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999998874 57789999999999999999999999 9999999999886
No 286
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=8.4e-14 Score=119.17 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=63.8
Q ss_pred ceeEEeccCCCC------CHHHHHHHhcccCceeEeee---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-EEEE
Q 004289 142 GTLVVFNLDSSV------SNDELHHIFGVYGEIKEIRE---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK-QIKL 210 (763)
Q Consensus 142 ~tLfVgNLp~sv------TeedLrelFs~fGeVkeIri---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr-~LkV 210 (763)
++|||+|||..+ ++++|+++|++||+|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 77999999999999999887 446689999999999999999999999999999 8876
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=2.2e-13 Score=125.55 Aligned_cols=77 Identities=12% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999884 6778999999999999999999 899999999999999987
Q ss_pred CCC
Q 004289 130 PKD 132 (763)
Q Consensus 130 pk~ 132 (763)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 288
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=2.2e-13 Score=129.56 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=71.5
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCc---eeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGe---VkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
...+|||+|||+++|+++|+++|+.||. |++|++ .++++|||||+|.+.++|++||+ ||+..|.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4569999999999999999999999999 777766 35668999999999999999999 999999999999999
Q ss_pred ccCchhHH
Q 004289 213 SHLRGLRK 220 (763)
Q Consensus 213 a~~k~~rr 220 (763)
+.+++..+
T Consensus 122 a~~~e~~~ 129 (136)
T 2hgl_A 122 SHRTEMDW 129 (136)
T ss_dssp CCHHHHHH
T ss_pred CChHHHHH
Confidence 98766443
No 289
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=6.5e-13 Score=124.50 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=70.5
Q ss_pred CCCCcE--EEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhhhcccCC--Ccccccc
Q 004289 53 EHPSRT--LLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGF-VTISYYDIRAARNAMKSLQNKLTRS--GKLDIHY 127 (763)
Q Consensus 53 e~psRt--LfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGf-AFV~F~d~e~AekAl~~Lng~~l~G--r~L~V~~ 127 (763)
..|+++ |||+||++.+++++|+++|++||+|..|++..+ .|| |||+|.+.++|++|+++|+|..|.| ++|+|.|
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345554 679999999999999999999999999987444 496 9999999999999999999999987 6899999
Q ss_pred cCCCCC
Q 004289 128 SIPKDN 133 (763)
Q Consensus 128 a~pk~~ 133 (763)
++++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 988764
No 290
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=1.8e-13 Score=120.05 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=63.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcc--cCCCcccccccC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKL--TRSGKLDIHYSI 129 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~--l~Gr~L~V~~a~ 129 (763)
...+..+|||+|||++++|++|+++|++||+|.+|++...++|||||+|.+.++|++ +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456778999999999999999999999999999999877899999999999999984 34444 569999999998
Q ss_pred CCCC
Q 004289 130 PKDN 133 (763)
Q Consensus 130 pk~~ 133 (763)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8654
No 291
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=4.8e-13 Score=117.37 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=63.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEEEeccCc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRY--IAGKQIKLEPSHLR 216 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~--I~Gr~LkVe~a~~k 216 (763)
....+|||+|||+++++++|+++|++||+|++|++..++||||||+|.+.++|++ |++.. +.|++|+|.++.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 4466999999999999999999999999999999977789999999999999983 55655 56999999999987
Q ss_pred hh
Q 004289 217 GL 218 (763)
Q Consensus 217 ~~ 218 (763)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 292
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=128.34 Aligned_cols=81 Identities=15% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEE----------EeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTF----------YRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv----------~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
..++++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|++..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4578999999999999999999999999988652 246899999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 004289 123 LDIHYSIPKDN 133 (763)
Q Consensus 123 L~V~~a~pk~~ 133 (763)
|.|.|+.++..
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977544
No 293
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=8.4e-14 Score=128.91 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=69.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEE---EE--eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRT---FY--RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~s---v~--~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
....++|||+|||+++++++|+++|++||.|.. +. .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 445689999999999999999999999998854 22 367889999999999999999998 999999999999999
Q ss_pred cCCC
Q 004289 128 SIPK 131 (763)
Q Consensus 128 a~pk 131 (763)
+.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 294
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.7e-13 Score=120.97 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=70.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeE-eee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVke-Iri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
....+|||+|||+++++++|+++|+.||.|.+ |++ ++..+|||||+|.+.++|++||+. ++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34569999999999999999999999999987 765 566789999999999999999997 999999999999998
Q ss_pred cCch
Q 004289 214 HLRG 217 (763)
Q Consensus 214 ~~k~ 217 (763)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 295
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-13 Score=116.16 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=65.8
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.+|||+|||.++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999999999876 34568999999999999999999999 9999999999986
No 296
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=128.38 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=72.0
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEe--------e--ecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEI--------R--ETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 208 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeI--------r--it~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~L 208 (763)
....+|||+|||..+++++|+++|+.||.|..| + .++..+|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345699999999999999999999999998763 2 367889999999999999999999999999999999
Q ss_pred EEEeccCchhH
Q 004289 209 KLEPSHLRGLR 219 (763)
Q Consensus 209 kVe~a~~k~~r 219 (763)
+|+++++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876543
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-14 Score=131.89 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRT--------FYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLT 118 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~s--------v~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l 118 (763)
...++++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999988 553 467899999999999999999999999999
Q ss_pred CCCcccccccCCCCCC
Q 004289 119 RSGKLDIHYSIPKDNP 134 (763)
Q Consensus 119 ~Gr~L~V~~a~pk~~~ 134 (763)
.|++|+|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887653
No 298
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-13 Score=126.59 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=71.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCe-EEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDV-RTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I-~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
.+.+.++|||+|||+++++++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 66664 577899999999999999999986 9999999999999
Q ss_pred ccCCCC
Q 004289 127 YSIPKD 132 (763)
Q Consensus 127 ~a~pk~ 132 (763)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986643
No 299
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.41 E-value=5e-13 Score=134.83 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=71.4
Q ss_pred cceeEEeccC-CCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLD-SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp-~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..+|||+||| ..+++++|+++|++||.|.+|++...++|||||+|.+.++|++||+.|||..+.|++|+|.+++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4689999999 89999999999999999999999877899999999999999999999999999999999999874
No 300
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=3.3e-13 Score=116.17 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=67.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhc----C-------CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQY----G-------DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskf----G-------~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
.+.++|||+|||+++++++|+++|++| | +|..+++ .+.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 467999999999999999999999999 8 9999987 456999999999999999999 99999999999
Q ss_pred ccccc
Q 004289 123 LDIHY 127 (763)
Q Consensus 123 L~V~~ 127 (763)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99864
No 301
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4e-13 Score=124.22 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.3
Q ss_pred ccceeEE--eccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCee-----CCeEEEEEe
Q 004289 140 NQGTLVV--FNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYI-----AGKQIKLEP 212 (763)
Q Consensus 140 ~~~tLfV--gNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I-----~Gr~LkVe~ 212 (763)
+..+||| +||+.++++++|+++|++||+|.+|.+.. .||||||+|.+.++|++|+++|||.+| .|++|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4568999 77999999999999999999999998753 589999999999999999999999998 689999999
Q ss_pred ccCc
Q 004289 213 SHLR 216 (763)
Q Consensus 213 a~~k 216 (763)
++..
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8754
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=7.3e-14 Score=124.38 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=72.7
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 51 NDEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 51 ~~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
..+.++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..+.|++|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34456789999999999999999999999999999985 56789999999999999999998 8899999999999
Q ss_pred ccCCCCCC
Q 004289 127 YSIPKDNP 134 (763)
Q Consensus 127 ~a~pk~~~ 134 (763)
++.++...
T Consensus 82 ~a~~~~~~ 89 (102)
T 2xs2_A 82 PAIRKQNL 89 (102)
T ss_dssp EEEECC--
T ss_pred ECCcCcch
Confidence 99876653
No 303
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.6e-13 Score=119.15 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=69.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 133 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~ 133 (763)
.++++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|+.. ...+.+++|+|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 46799999999999999999999999999999998777899999999999999865432 3456899999999988765
Q ss_pred C
Q 004289 134 P 134 (763)
Q Consensus 134 ~ 134 (763)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 304
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4e-13 Score=118.14 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=67.5
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
...+|||+|||.++++++|+++|+.||.|.+|........||||+|.+.++|++|++ |||..|.|++|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 456999999999999999999999999999984433222299999999999999999 99999999999999887554
No 305
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.9e-13 Score=121.84 Aligned_cols=79 Identities=8% Similarity=0.147 Sum_probs=69.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
...+.++|||+|||+++++++|+++|++||.| .|++ +++++|||||+|.+.++|++|| .++++.|.++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 44567899999999999999999999999965 6663 6788999999999999999999 5799999999999988
Q ss_pred cCCCC
Q 004289 128 SIPKD 132 (763)
Q Consensus 128 a~pk~ 132 (763)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76654
No 306
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=122.28 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=72.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCc---eeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGE---IKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGe---VkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
....+|||+|||+++++++|+++|+.||. |..|++ .+..+|||||+|.+.++|++||+ +|+..|.|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 34569999999999999999999999998 888876 34568899999999999999999 99999999999999
Q ss_pred eccCchhHHHH
Q 004289 212 PSHLRGLRKCL 222 (763)
Q Consensus 212 ~a~~k~~rr~~ 222 (763)
++.+++..+.+
T Consensus 88 ~a~~~~~~~~~ 98 (107)
T 2lmi_A 88 EINNEDVDALM 98 (107)
T ss_dssp ECCHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99887655444
No 307
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=3.9e-13 Score=123.24 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=65.6
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE-----EEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ-----IKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~-----LkVe~a~ 214 (763)
...+|||+|||.++++++|+++|++||+|+.|++... +||||+|.+.++|++||+.|||.+|.|++ |+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3469999999999999999999999999999998554 99999999999999999999999999998 6666655
Q ss_pred C
Q 004289 215 L 215 (763)
Q Consensus 215 ~ 215 (763)
+
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 308
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=4e-13 Score=123.11 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
...++|||+|||+++++++|+++|++||+|..|++... |||||+|.+.++|++||+.|+++.|.|++|+|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 45689999999999999999999999999999998444 99999999999999999999999999999444
No 309
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.39 E-value=3.5e-13 Score=138.44 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=73.3
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccC--ceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYG--EIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fG--eVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
..+|||+||+.++|+++|+++|++|| +|++|++ ++.+||||||+|.+.++|++||+.||+..|.|++|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45899999999999999999999999 9999886 5677899999999999999999999999999999999999
Q ss_pred cCchhHH
Q 004289 214 HLRGLRK 220 (763)
Q Consensus 214 ~~k~~rr 220 (763)
++....+
T Consensus 148 ~~~~~~~ 154 (229)
T 3q2s_C 148 NKQFLSQ 154 (229)
T ss_dssp CHHHHHH
T ss_pred CCCccch
Confidence 9876543
No 310
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=2e-13 Score=125.79 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=69.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCC---eEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~---I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
....++|||+|||+++++++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ ++++.|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345789999999999999999999999998 766663 47789999999999999999998 9999999999999
Q ss_pred cccCC
Q 004289 126 HYSIP 130 (763)
Q Consensus 126 ~~a~p 130 (763)
.++.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 311
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6.8e-13 Score=118.49 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=64.2
Q ss_pred eeEEeccCCCCCHHH----HHHHhccc-CceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 143 TLVVFNLDSSVSNDE----LHHIFGVY-GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 143 tLfVgNLp~svTeed----LrelFs~f-GeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
+|||+|||..+++++ |+++|+.| |+|.+| ++ |+|||+|.+.++|.+|++.|+|.++.||+|+|.|++.+.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 499999999999988 55899999 599998 33 999999999999999999999999999999999998764
No 312
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=2e-13 Score=114.53 Aligned_cols=70 Identities=14% Similarity=0.355 Sum_probs=64.6
Q ss_pred EEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 58 TLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 58 tLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
+|||+|||.++++++|+++|++||+|..+.+ +++++|||||+|.+.++|++|++ +++..+.|++|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999884 47789999999999999999997 4889999999999764
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=3.8e-14 Score=129.44 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=72.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeE--------eee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKE--------IRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVke--------Iri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
....+|||+|||.++++++|+++|++||.|.. |++ ++..++||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 44679999999999999999999999999988 665 34568899999999999999999999999999
Q ss_pred eEEEEEeccCchhH
Q 004289 206 KQIKLEPSHLRGLR 219 (763)
Q Consensus 206 r~LkVe~a~~k~~r 219 (763)
++|+|++++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999977543
No 314
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=7.5e-13 Score=122.91 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...++++|||+|| ++++++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..|.|++|+|.|+.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457899999996 7999999999999999999988 588999999999999999999999999999999999999876
Q ss_pred CC
Q 004289 132 DN 133 (763)
Q Consensus 132 ~~ 133 (763)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.37 E-value=8.5e-13 Score=130.44 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345689999999999999999999999999999986 3678999999999999999999999999999999999998
Q ss_pred CCC
Q 004289 129 IPK 131 (763)
Q Consensus 129 ~pk 131 (763)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 764
No 316
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=5.5e-13 Score=128.54 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=74.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
...+.++|||+|||.++++++|+++|++||+|+.+..+++++|||||+|.+.++|++|++.|+|..|.|++|+|.|+.+|
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 34567899999999999999999999999999998667889999999999999999999999999999999999999876
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=3.7e-13 Score=138.27 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=70.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcC--CeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYG--DVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG--~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..++|||+|||+++++++|+++|++|| +|..|++ +++++|||||+|.+.++|++||+.|+++.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457999999999999999999999999 9999984 778999999999999999999999999999999999999
Q ss_pred cCC
Q 004289 128 SIP 130 (763)
Q Consensus 128 a~p 130 (763)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 318
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.37 E-value=2.8e-13 Score=113.59 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=64.4
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
+|||+|||.++++++|+++|++||+|.+|++ ++.++|||||+|.+.++|.+|++ +++..|.|++|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999887 35568999999999999999998 5899999999999875
No 319
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=119.67 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=68.0
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
..+|||+|||+++++++|+++|+.| .|.+|++ .++++|||||+|.+.++|++|| .||+..|.|+.|+|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4599999999999999999999999 8988887 3556899999999999999999 69999999999999988754
Q ss_pred h
Q 004289 217 G 217 (763)
Q Consensus 217 ~ 217 (763)
+
T Consensus 94 ~ 94 (109)
T 2dnn_A 94 Q 94 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 320
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.5e-13 Score=119.99 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=67.9
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
....+|||+|||+++++++|+++|+.||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345699999999999999999999999954 7765 55678999999999999999994 89999999999999987
Q ss_pred Cch
Q 004289 215 LRG 217 (763)
Q Consensus 215 ~k~ 217 (763)
+.+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 321
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.36 E-value=3.6e-13 Score=121.60 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=70.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCC---eEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~---I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
....++|||+|||+++++++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346789999999999999999999999998 777774 47789999999999999999998 9999999999999
Q ss_pred cccCCC
Q 004289 126 HYSIPK 131 (763)
Q Consensus 126 ~~a~pk 131 (763)
.++.++
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988653
No 322
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.36 E-value=3.3e-13 Score=128.28 Aligned_cols=78 Identities=8% Similarity=0.037 Sum_probs=69.7
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCC---eEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGD---VRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~---I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
.....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ ++++.|.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456789999999999999999999999998 666653 47889999999999999999998 999999999999
Q ss_pred ccccCC
Q 004289 125 IHYSIP 130 (763)
Q Consensus 125 V~~a~p 130 (763)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 988754
No 323
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=1.6e-12 Score=111.91 Aligned_cols=72 Identities=15% Similarity=0.310 Sum_probs=66.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhccc----C-------ceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVY----G-------EIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~f----G-------eVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
....+|||+|||.++++++|+++|+.| | .|.++++. ..++||||+|.+.++|.+|+ .|||..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 346799999999999999999999999 8 89999874 45899999999999999999 99999999999
Q ss_pred EEEEe
Q 004289 208 IKLEP 212 (763)
Q Consensus 208 LkVe~ 212 (763)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 324
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.6e-12 Score=123.04 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIH 126 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~ 126 (763)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4556789999999999999999999999999999884 56789999999999999999999999999999999999
Q ss_pred ccC
Q 004289 127 YSI 129 (763)
Q Consensus 127 ~a~ 129 (763)
|+.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 325
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=2.3e-12 Score=122.19 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=71.3
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
.++|||+|||.++++++|+++|+.||.|.+|++ ++..+|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999999999877 455679999999999999999999999999999999999987
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 326
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.35 E-value=2.4e-12 Score=129.48 Aligned_cols=81 Identities=27% Similarity=0.303 Sum_probs=72.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.+..+|||+|||.++++++|+++|++||+|++|++ ++..+|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34569999999999999999999999999999886 4667899999999999999999999999999999999999
Q ss_pred cCchhH
Q 004289 214 HLRGLR 219 (763)
Q Consensus 214 ~~k~~r 219 (763)
......
T Consensus 93 ~~~~~~ 98 (213)
T 4f02_A 93 QRDPSL 98 (213)
T ss_dssp CCCTHH
T ss_pred cccccc
Confidence 876543
No 327
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.3e-13 Score=116.37 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=66.3
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
..++|||+|||.++++++|+++|++||.|++|++...++|||||+|.+.++|++|+. ....+.|++|+|.+++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 356999999999999999999999999999999977789999999999999986532 1345689999999998765
No 328
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=2.2e-12 Score=128.07 Aligned_cols=81 Identities=17% Similarity=0.365 Sum_probs=74.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999985 5677999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004289 129 IPKDNP 134 (763)
Q Consensus 129 ~pk~~~ 134 (763)
.++...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 887543
No 329
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=3e-12 Score=128.13 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHh--hhcccCCCcccccccCCCCCCCc-----cccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-
Q 004289 102 DIRAARNAMKSL--QNKLTRSGKLDIHYSIPKDNPSE-----KEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE- 173 (763)
Q Consensus 102 d~e~AekAl~~L--ng~~l~Gr~L~V~~a~pk~~~~~-----~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri- 173 (763)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||.++++++|+++|++||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667788888766 44456666555654422111111 2234579999999999999999999999999999887
Q ss_pred ---cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchh
Q 004289 174 ---TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 174 ---t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
.+..+|||||+|.+.++|.+|++.++ ..+.|++|+|.+++.-.+
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYFA 189 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC--
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHHH
Confidence 35678999999999999999997655 599999999999876543
No 330
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=1.3e-12 Score=121.30 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=70.4
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchhH
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGLR 219 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~r 219 (763)
...+|||+|| ++++++|+++|++||+|++|++. ..+|||||+|.+.++|++|++.|||..|.|++|+|++++++...
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 4569999996 69999999999999999999884 67899999999999999999999999999999999999987644
No 331
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.35 E-value=2.3e-12 Score=122.76 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=71.0
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..+|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 468999999999999999999999999999886 344678999999999999999999999999999999999986
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
+.
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=2.9e-13 Score=129.14 Aligned_cols=120 Identities=10% Similarity=0.046 Sum_probs=69.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCCCCccccccceeEEeccCCCCCHHHHHHHhcccCceeEeee
Q 004289 94 GFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE 173 (763)
Q Consensus 94 GfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri 173 (763)
|+++.+|.-.+.+..++..+... ..+...--.+... ..........+|||+|||+++|+++|+++|+.|| |++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 67777887777776666554432 2332221111111 1112223456999999999999999999999999 668876
Q ss_pred ----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCchh
Q 004289 174 ----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRGL 218 (763)
Q Consensus 174 ----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~~ 218 (763)
.++++|||||+|.+.++|++|| .+|+..|.|+.|+|.++.+++.
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3456889999999999999999 7999999999999999887653
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.34 E-value=8.3e-13 Score=117.53 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=70.8
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPS 213 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a 213 (763)
.....+|||+|||.++++++|+++|+.||.|..|++ ++..+|||||+|.+.++|++|++ ++..+.|++|+|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345679999999999999999999999999999887 44568999999999999999998 999999999999999
Q ss_pred cCchh
Q 004289 214 HLRGL 218 (763)
Q Consensus 214 ~~k~~ 218 (763)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87653
No 334
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.33 E-value=6.7e-13 Score=126.65 Aligned_cols=80 Identities=9% Similarity=0.137 Sum_probs=69.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
.....++|||+|||+++++++|+++|++|| |..|++ .++++|||||+|.+.++|++|| .++++.|.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 557774 4678999999999999999999 7899999999999998
Q ss_pred cCCCCC
Q 004289 128 SIPKDN 133 (763)
Q Consensus 128 a~pk~~ 133 (763)
+.+++.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 335
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=9.6e-13 Score=120.40 Aligned_cols=74 Identities=7% Similarity=0.110 Sum_probs=67.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
..++|||+|||+++++++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .++++.|.|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8888875 4778999999999999999999 6999999999999977643
No 336
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=122.63 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=70.8
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCce----eEeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEI----KEIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeV----keIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
..+|||+|||+++|+++|+++|+.||.| ..|++ +++++|||||+|.+.++|++||+. |+..|.|+.|+|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 4689999999999999999999999975 45655 566789999999999999999985 99999999999999
Q ss_pred ccCchhHHHH
Q 004289 213 SHLRGLRKCL 222 (763)
Q Consensus 213 a~~k~~rr~~ 222 (763)
+.+++.++.+
T Consensus 102 a~~~e~~~~~ 111 (123)
T 2dha_A 102 STAAEVQQVL 111 (123)
T ss_dssp ECHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9877655544
No 337
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=2.8e-12 Score=126.75 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=72.1
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeec----CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRET----PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit----~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
...+|||+|||..+++++|+++|+.||+|+.|++. +..++||||+|.+.++|++|++.|||..|.|++|+|+++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 35699999999999999999999999999998873 55689999999999999999999999999999999999987
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 338
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.32 E-value=2.8e-12 Score=125.63 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=74.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999884 566799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004289 128 SIPKDN 133 (763)
Q Consensus 128 a~pk~~ 133 (763)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987653
No 339
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=1.7e-12 Score=134.59 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCCCcEEEecCCCCCC---------CHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhccc----
Q 004289 52 DEHPSRTLLLRKINSNI---------EDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLT---- 118 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~v---------tEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l---- 118 (763)
.....++|||+||+..+ +|++|+++|++||+|..|++ ..++|||||+|.+.++|+.|+++|+++.|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 45678999999999998 79999999999999999997 46799999999999999999999999999
Q ss_pred --------CCCcccccccCCCCCC
Q 004289 119 --------RSGKLDIHYSIPKDNP 134 (763)
Q Consensus 119 --------~Gr~L~V~~a~pk~~~ 134 (763)
.|+.|.|.|+.++.++
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp STTGGGGGGSCCCEEEECC-----
T ss_pred cccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 340
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.32 E-value=1.5e-12 Score=124.05 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4679999999999999999999999999999984 57789999999999999999997 89999999999999998
Q ss_pred CCC
Q 004289 130 PKD 132 (763)
Q Consensus 130 pk~ 132 (763)
|++
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
No 341
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.31 E-value=1.6e-12 Score=122.08 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=68.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeE--EEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVR--TFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~--sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
.....++|||+|||+++++++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++. ++..|.|+.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567899999999999999999999999 566 7774 477899999999999999999974 779999999999
Q ss_pred cccCCC
Q 004289 126 HYSIPK 131 (763)
Q Consensus 126 ~~a~pk 131 (763)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 342
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.6e-12 Score=117.31 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----C---CCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----A---SKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----t---gkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
...+++|||+|||+++++++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|+ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34678999999999999999999999999999 553 2 6889999999999999999999884 25666666
Q ss_pred cccc
Q 004289 125 IHYS 128 (763)
Q Consensus 125 V~~a 128 (763)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 343
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.5e-12 Score=114.38 Aligned_cols=82 Identities=11% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCCCCcEEEecCCCCCCC-----------HHHHHHHHhhcCCeEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhhhcccC
Q 004289 52 DEHPSRTLLLRKINSNIE-----------DSELKALFEQYGDVRTFYR-ASKHCGFVTISYYDIRAARNAMKSLQNKLTR 119 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vt-----------EeeL~~lFskfG~I~sv~~-tgkskGfAFV~F~d~e~AekAl~~Lng~~l~ 119 (763)
...++++|+|.||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|+|..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 567899999999954433 6899999999999999875 3457999999999999999999999999999
Q ss_pred CCcccccccCCCCC
Q 004289 120 SGKLDIHYSIPKDN 133 (763)
Q Consensus 120 Gr~L~V~~a~pk~~ 133 (763)
|++|+|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999988654
No 344
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.30 E-value=3.5e-12 Score=122.16 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccccccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYS 128 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a 128 (763)
...++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999985 6778999999999999999999999999999999999986
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=6e-12 Score=130.42 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred cccCCCcccccccCCCCCCCccccccceeEEeccCCCC---------CHHHHHHHhcccCceeEeeecCCcccEEEEEEc
Q 004289 116 KLTRSGKLDIHYSIPKDNPSEKEINQGTLVVFNLDSSV---------SNDELHHIFGVYGEIKEIRETPQKIHQKYIEFY 186 (763)
Q Consensus 116 ~~l~Gr~L~V~~a~pk~~~~~~~~~~~tLfVgNLp~sv---------TeedLrelFs~fGeVkeIrit~~skG~aFVeF~ 186 (763)
....|+.....+..........+....+|||+||+..+ ++++|+++|++||+|.+|++. ..+|||||+|.
T Consensus 109 ~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~ 187 (240)
T 3u1l_A 109 LDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFK 187 (240)
T ss_dssp BCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEES
T ss_pred cccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeC
Confidence 44557665555543332222334556799999999998 799999999999999999985 46899999999
Q ss_pred CHHHHHHHHHHhCCCee------------CCeEEEEEeccCchhH
Q 004289 187 DTRAAEAALRELNSRYI------------AGKQIKLEPSHLRGLR 219 (763)
Q Consensus 187 d~esA~kAL~~LnG~~I------------~Gr~LkVe~a~~k~~r 219 (763)
+.++|++|+++|+|..| .|+.|.|.|++.+...
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 99999999999999999 8999999999976543
No 346
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=122.48 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=66.5
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCe----EEEE----eCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDV----RTFY----RASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I----~sv~----~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
...++|||+|||+++++++|+++|++||+| ..|+ .+++++|||||+|.+.++|++|++. +++.|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 3444 2678999999999999999999986 999999999999
Q ss_pred cccCC
Q 004289 126 HYSIP 130 (763)
Q Consensus 126 ~~a~p 130 (763)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 77643
No 347
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.29 E-value=1e-11 Score=122.29 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=73.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcC-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccC-CCcccccccCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSIP 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG-~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~-Gr~L~V~~a~p 130 (763)
..++++|||+|||.++++++|+++|++|| .|..+++....+|||||+|.+.++|++|++.|+|..+. |++|+|.|+.+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 35689999999999999999999999999 99999986667999999999999999999999999999 99999999876
Q ss_pred C
Q 004289 131 K 131 (763)
Q Consensus 131 k 131 (763)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 348
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=6.3e-12 Score=120.22 Aligned_cols=77 Identities=14% Similarity=0.354 Sum_probs=69.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccC---CCccc
Q 004289 52 DEHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SGKLD 124 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~---Gr~L~ 124 (763)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+. +++|.
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3446789999999999999999999999999999884 5667999999999999999999999998776 49999
Q ss_pred cccc
Q 004289 125 IHYS 128 (763)
Q Consensus 125 V~~a 128 (763)
|.|+
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 349
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.29 E-value=8.1e-12 Score=122.11 Aligned_cols=79 Identities=13% Similarity=0.234 Sum_probs=70.1
Q ss_pred ccccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 138 EINQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 138 ~~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
.....+|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|.+||+. ++..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345679999999999999999999999999999876 355689999999999999999975 99999999999999
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 98764
No 350
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=8.6e-12 Score=126.81 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcC-CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccC-CCcccccccCC
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYG-DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR-SGKLDIHYSIP 130 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG-~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~-Gr~L~V~~a~p 130 (763)
..++++|||+|||.++++++|+++|++|| +|..+++..+.+|||||+|.+.++|++|++.|+|..+. |++|+|.|+++
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 35679999999999999999999999999 99999986678999999999999999999999999999 99999999976
Q ss_pred C
Q 004289 131 K 131 (763)
Q Consensus 131 k 131 (763)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 351
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.27 E-value=5.7e-12 Score=141.14 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=74.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~ 127 (763)
..+.++|||+|||.+||+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||+.|+++.|.|++|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999985 677899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004289 128 SIPKDN 133 (763)
Q Consensus 128 a~pk~~ 133 (763)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 352
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.27 E-value=3.1e-12 Score=120.19 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=67.1
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCcee--Eeee----cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIK--EIRE----TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEP 212 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVk--eIri----t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~ 212 (763)
....+|||+|||+++|+++|+++|+.| .|+ +|++ .++++|||||+|.+.++|++||+ +++..|.||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 345689999999999999999999999 566 7776 35568999999999999999998 578999999999999
Q ss_pred ccCch
Q 004289 213 SHLRG 217 (763)
Q Consensus 213 a~~k~ 217 (763)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87554
No 353
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.25 E-value=1.7e-11 Score=127.18 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=70.8
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
....+|||+|||.++|+++|+++|+.||.|.+|++. ..+|||||+|.+.++|.+|+..|+|..|.|++|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 445699999999999999999999999999999984 4689999999999999999999999999999999999875
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=112.87 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=64.5
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeee-----c---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-----T---PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLE 211 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIri-----t---~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe 211 (763)
..++|||+|||.++++++|+++|++||+|. +.+ + +..+|||||+|.+.++|++||+.|+ .+.|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457999999999999999999999999998 554 1 4678999999999999999999985 3788888887
Q ss_pred eccCchh
Q 004289 212 PSHLRGL 218 (763)
Q Consensus 212 ~a~~k~~ 218 (763)
.+.+...
T Consensus 84 ~~~~~~~ 90 (114)
T 2dnl_A 84 SSPTIKD 90 (114)
T ss_dssp CCSSSCS
T ss_pred cCCCcCC
Confidence 6655443
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.6e-11 Score=110.40 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=69.0
Q ss_pred cccceeEEeccCCCCC-----------HHHHHHHhcccCceeEeee-cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 004289 139 INQGTLVVFNLDSSVS-----------NDELHHIFGVYGEIKEIRE-TPQKIHQKYIEFYDTRAAEAALRELNSRYIAGK 206 (763)
Q Consensus 139 ~~~~tLfVgNLp~svT-----------eedLrelFs~fGeVkeIri-t~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr 206 (763)
....+|+|.||-.... +++|+++|++||+|++|.+ ....+|||||+|.+.++|++|++.|||..|.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4567999999944332 5899999999999999876 345789999999999999999999999999999
Q ss_pred EEEEEeccCch
Q 004289 207 QIKLEPSHLRG 217 (763)
Q Consensus 207 ~LkVe~a~~k~ 217 (763)
+|+|.++.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998764
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=2.4e-11 Score=110.34 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=67.8
Q ss_pred cccceeEEeccCC-----CCCHHHHHHHhcccCceeEeeec------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 004289 139 INQGTLVVFNLDS-----SVSNDELHHIFGVYGEIKEIRET------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQ 207 (763)
Q Consensus 139 ~~~~tLfVgNLp~-----svTeedLrelFs~fGeVkeIrit------~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~ 207 (763)
..+.+|+|.||-. +-++++|++.|++||+|.+|++. ++++|++||+|.+.++|.+|++.|||..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3466999999963 23789999999999999998772 356899999999999999999999999999999
Q ss_pred EEEEeccCc
Q 004289 208 IKLEPSHLR 216 (763)
Q Consensus 208 LkVe~a~~k 216 (763)
|+|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999853
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.24 E-value=1.3e-11 Score=111.99 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=68.7
Q ss_pred CCCCcEEEecCCCC-----CCCHHHHHHHHhhcCCeEEEEe------CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 53 EHPSRTLLLRKINS-----NIEDSELKALFEQYGDVRTFYR------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 53 e~psRtLfVgNLP~-----~vtEeeL~~lFskfG~I~sv~~------tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
..++++|+|+||.. +-++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999963 2378999999999999999985 146799999999999999999999999999999
Q ss_pred cccccccCC
Q 004289 122 KLDIHYSIP 130 (763)
Q Consensus 122 ~L~V~~a~p 130 (763)
+|.|.|+.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.2e-11 Score=116.60 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=68.6
Q ss_pred ceeEEecc----CCCCCHHHHHHHhcccCceeEeee-----cCCcccEEEEEEcC----HHH----HHHHHH--HhCCCe
Q 004289 142 GTLVVFNL----DSSVSNDELHHIFGVYGEIKEIRE-----TPQKIHQKYIEFYD----TRA----AEAALR--ELNSRY 202 (763)
Q Consensus 142 ~tLfVgNL----p~svTeedLrelFs~fGeVkeIri-----t~~skG~aFVeF~d----~es----A~kAL~--~LnG~~ 202 (763)
..|||+|| |+.+++++|+++|+.||+|.+|++ ++.++|||||+|.| +++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999876 78889999999996 333 788888 789999
Q ss_pred eCCeEEEEEeccCchhHH
Q 004289 203 IAGKQIKLEPSHLRGLRK 220 (763)
Q Consensus 203 I~Gr~LkVe~a~~k~~rr 220 (763)
|.|++|+|.+-+.....+
T Consensus 83 I~Gr~irV~ln~~g~~~~ 100 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNN 100 (136)
T ss_dssp ETTEEEEEEECCTTHHHH
T ss_pred ecCcEEEEEECcccHHHH
Confidence 999999999988765433
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.15 E-value=4.7e-11 Score=119.46 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=67.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIP 130 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~p 130 (763)
..++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..+.|++|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999985 4778999999999999999999765 4689999999988643
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=5.7e-11 Score=107.75 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=67.9
Q ss_pred CCCCcEEEecCC--CCCCC--------HHHHHHHHhhcCCeEEEEeC-------CCcccEEEEEeCCHHHHHHHHHHhhh
Q 004289 53 EHPSRTLLLRKI--NSNIE--------DSELKALFEQYGDVRTFYRA-------SKHCGFVTISYYDIRAARNAMKSLQN 115 (763)
Q Consensus 53 e~psRtLfVgNL--P~~vt--------EeeL~~lFskfG~I~sv~~t-------gkskGfAFV~F~d~e~AekAl~~Lng 115 (763)
..|++.|.|.|+ |.++. +++|++.|++||+|.+|++. .+++|+|||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999998 44444 36899999999999999952 25789999999999999999999999
Q ss_pred cccCCCcccccccCC
Q 004289 116 KLTRSGKLDIHYSIP 130 (763)
Q Consensus 116 ~~l~Gr~L~V~~a~p 130 (763)
+.+.||+|+|.|+.+
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998743
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.8e-10 Score=102.65 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCCCC
Q 004289 66 SNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPKDN 133 (763)
Q Consensus 66 ~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk~~ 133 (763)
.++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|+|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 56999999999999999999998789999999999999999999997544 6799999999877653
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1.4e-10 Score=105.16 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=66.2
Q ss_pred ccceeEEecc--CCCCC--------HHHHHHHhcccCceeEeeecC-------CcccEEEEEEcCHHHHHHHHHHhCCCe
Q 004289 140 NQGTLVVFNL--DSSVS--------NDELHHIFGVYGEIKEIRETP-------QKIHQKYIEFYDTRAAEAALRELNSRY 202 (763)
Q Consensus 140 ~~~tLfVgNL--p~svT--------eedLrelFs~fGeVkeIrit~-------~skG~aFVeF~d~esA~kAL~~LnG~~ 202 (763)
+++.|+|.|+ +.++. ++||++.|++||+|.+|++.. ..+|++||+|.+.++|.+|+++|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4668999997 33443 379999999999999998732 458999999999999999999999999
Q ss_pred eCCeEEEEEeccCc
Q 004289 203 IAGKQIKLEPSHLR 216 (763)
Q Consensus 203 I~Gr~LkVe~a~~k 216 (763)
+.||+|+|+++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998754
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.5e-11 Score=113.31 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=64.2
Q ss_pred cEEEecCC----CCCCCHHHHHHHHhhcCCeEEEEe-----CCCcccEEEEEeCC----HHH----HHHHHH--Hhhhcc
Q 004289 57 RTLLLRKI----NSNIEDSELKALFEQYGDVRTFYR-----ASKHCGFVTISYYD----IRA----ARNAMK--SLQNKL 117 (763)
Q Consensus 57 RtLfVgNL----P~~vtEeeL~~lFskfG~I~sv~~-----tgkskGfAFV~F~d----~e~----AekAl~--~Lng~~ 117 (763)
..|||+|| |+.++|++|+++|++||+|.+|.+ ++.++|||||+|.| +++ |.+|++ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999983 89999999999996 333 888988 789999
Q ss_pred cCCCccccccc
Q 004289 118 TRSGKLDIHYS 128 (763)
Q Consensus 118 l~Gr~L~V~~a 128 (763)
|.|++|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999874
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.07 E-value=1.6e-10 Score=125.57 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=66.0
Q ss_pred CCCCCcEEEecC--CCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccC---CC--ccc
Q 004289 52 DEHPSRTLLLRK--INSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTR---SG--KLD 124 (763)
Q Consensus 52 ~e~psRtLfVgN--LP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~---Gr--~L~ 124 (763)
...|+++|||+| |+..+||++|+++|++||+|.+|.+. .+||||||+|.+.++|++|+++|||+.+. |+ .|.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 357899999999 57899999999999999999999873 47999999999999999999999998873 34 466
Q ss_pred cccc
Q 004289 125 IHYS 128 (763)
Q Consensus 125 V~~a 128 (763)
|.|.
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6664
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.07 E-value=7.2e-11 Score=106.82 Aligned_cols=68 Identities=31% Similarity=0.500 Sum_probs=59.2
Q ss_pred EeccCCCCCHHHHHHHh------------cccCceeEeeecC----CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 146 VFNLDSSVSNDELHHIF------------GVYGEIKEIRETP----QKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 146 VgNLp~svTeedLrelF------------s~fGeVkeIrit~----~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
+.+|+..+++++|++.| ++||+|++|++.. +++|||||+|.+.++|.+|++.|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 9999999998843 4589999999999999999999999999999999
Q ss_pred EEec
Q 004289 210 LEPS 213 (763)
Q Consensus 210 Ve~a 213 (763)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.06 E-value=2.8e-10 Score=123.73 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=66.3
Q ss_pred cccceeEEec--cCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---Ce--EEEEE
Q 004289 139 INQGTLVVFN--LDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIA---GK--QIKLE 211 (763)
Q Consensus 139 ~~~~tLfVgN--Lp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~---Gr--~LkVe 211 (763)
.+..+|||+| |+..+|+++|+++|++||+|++|.+.. .||||||+|.+.++|++|+++|||.++. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 4567999999 678999999999999999999998754 7899999999999999999999999883 44 68888
Q ss_pred ecc
Q 004289 212 PSH 214 (763)
Q Consensus 212 ~a~ 214 (763)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 875
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.8e-10 Score=101.80 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCch
Q 004289 151 SSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 151 ~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k~ 217 (763)
..+++++|+++|++||+|++|++.+.++|||||+|.+.++|++|++.+++ +.|++|+|+|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 56899999999999999999999888899999999999999999997554 789999999998764
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=1.3e-10 Score=105.15 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=59.6
Q ss_pred ecCCCCCCCHHHHHHHH------------hhcCCeEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 61 LRKINSNIEDSELKALF------------EQYGDVRTFYR----ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 61 VgNLP~~vtEeeL~~lF------------skfG~I~sv~~----tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
+.+|+..+++++|++.| ++||+|..|++ .++++|||||+|.+.++|++|++.|+|+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677778888877666 99999999996 345799999999999999999999999999999999
Q ss_pred cccc
Q 004289 125 IHYS 128 (763)
Q Consensus 125 V~~a 128 (763)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.98 E-value=1.1e-09 Score=101.69 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=65.3
Q ss_pred ccceeEEeccCC--C---CCHHHHHHHhcccCceeEeeec---------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 004289 140 NQGTLVVFNLDS--S---VSNDELHHIFGVYGEIKEIRET---------PQKIHQKYIEFYDTRAAEAALRELNSRYIAG 205 (763)
Q Consensus 140 ~~~tLfVgNLp~--s---vTeedLrelFs~fGeVkeIrit---------~~skG~aFVeF~d~esA~kAL~~LnG~~I~G 205 (763)
++++|+|.|+-. + -.++||++.|++||+|.+|++. +..+|++||+|.+.++|.+|+++|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 466899999832 2 2368999999999999998762 2346899999999999999999999999999
Q ss_pred eEEEEEeccCc
Q 004289 206 KQIKLEPSHLR 216 (763)
Q Consensus 206 r~LkVe~a~~k 216 (763)
|+|+|.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998753
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.96 E-value=1.5e-09 Score=100.04 Aligned_cols=78 Identities=21% Similarity=0.193 Sum_probs=65.6
Q ss_pred ccceeEEeccCCCC----------CHHHHHHHhcccCceeEeeecCC-cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 004289 140 NQGTLVVFNLDSSV----------SNDELHHIFGVYGEIKEIRETPQ-KIHQKYIEFYDTRAAEAALRELNSRYIAGKQI 208 (763)
Q Consensus 140 ~~~tLfVgNLp~sv----------TeedLrelFs~fGeVkeIrit~~-skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~L 208 (763)
++++|.+.|+=..- .++||++.|++||.|++|.+... .+|++||+|.+.++|.+|++.|||..+.||+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45678888864321 23689999999999999988433 48999999999999999999999999999999
Q ss_pred EEEeccCch
Q 004289 209 KLEPSHLRG 217 (763)
Q Consensus 209 kVe~a~~k~ 217 (763)
+|+|+....
T Consensus 86 ~v~~~~~~~ 94 (114)
T 3s6e_A 86 TAAYVPLPT 94 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEEEcHHH
Confidence 999997554
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.94 E-value=1.1e-09 Score=101.53 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=65.9
Q ss_pred CCCcEEEecCCCC--CC---CHHHHHHHHhhcCCeEEEEe---------CCCcccEEEEEeCCHHHHHHHHHHhhhcccC
Q 004289 54 HPSRTLLLRKINS--NI---EDSELKALFEQYGDVRTFYR---------ASKHCGFVTISYYDIRAARNAMKSLQNKLTR 119 (763)
Q Consensus 54 ~psRtLfVgNLP~--~v---tEeeL~~lFskfG~I~sv~~---------tgkskGfAFV~F~d~e~AekAl~~Lng~~l~ 119 (763)
.|+++|+|.|+-. ++ -++||++.|++||+|.+|++ +++++|+|||+|.+.++|++|++.|+|+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4799999999942 22 36899999999999999984 1346799999999999999999999999999
Q ss_pred CCcccccccC
Q 004289 120 SGKLDIHYSI 129 (763)
Q Consensus 120 Gr~L~V~~a~ 129 (763)
||.|+|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999874
No 372
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.91 E-value=2.6e-09 Score=94.90 Aligned_cols=84 Identities=20% Similarity=0.346 Sum_probs=73.6
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eecccccccce-eEEEEEecCCccchHHHHHHhcCccccCCCC-ccE
Q 004289 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFI-YLPIDFKNKCN-VGYAFINMTDPSQIVPFYQSFNGKKWEKFNS-EKV 669 (763)
Q Consensus 593 TTvMirNIPnk~t~~~L~~~ide~~~g~yDF~-YlpiDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s-~K~ 669 (763)
|.|.||++|..+|++.++++|... .++||+ |.|-+...+-+ -+.|||||.+++++..|.+.|+|+.|...+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999975 378988 67988876644 6999999999999999999999999997654 455
Q ss_pred EEEEeeecc
Q 004289 670 ASLAYARIQ 678 (763)
Q Consensus 670 ~~v~yA~iQ 678 (763)
+.|+||-.|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999887
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.89 E-value=2.5e-09 Score=98.67 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=65.4
Q ss_pred CCCCcEEEecCCCCCCC----------HHHHHHHHhhcCCeEEEEeCC-CcccEEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 53 EHPSRTLLLRKINSNIE----------DSELKALFEQYGDVRTFYRAS-KHCGFVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 53 e~psRtLfVgNLP~~vt----------EeeL~~lFskfG~I~sv~~tg-kskGfAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
..|++.|.+.|+=..-+ ++||++.|++||.|..|++.. ..+|||||+|.+.++|++|++.|||+.+.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45789999999843222 347789999999999999733 3589999999999999999999999999999
Q ss_pred cccccccC
Q 004289 122 KLDIHYSI 129 (763)
Q Consensus 122 ~L~V~~a~ 129 (763)
.|.|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999874
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=2e-08 Score=93.74 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=70.9
Q ss_pred ceeEEeccCCC-CCHHHHHHHhcccCceeEeeecCCcccEEEEEEcC-HHHHHHHHHHhC--CCeeCCeEEEEEeccCch
Q 004289 142 GTLVVFNLDSS-VSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYD-TRAAEAALRELN--SRYIAGKQIKLEPSHLRG 217 (763)
Q Consensus 142 ~tLfVgNLp~s-vTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d-~esA~kAL~~Ln--G~~I~Gr~LkVe~a~~k~ 217 (763)
..|+|+||+.+ +++++|+++|+.||+|++|.+..... .|||+|.+ .++|.+|+++|+ +..|.|..++++...-.+
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Gee 97 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEV 97 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHH
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHH
Confidence 48999999999 99999999999999999999854433 79999999 899999999995 788999999999988877
Q ss_pred hHHHH
Q 004289 218 LRKCL 222 (763)
Q Consensus 218 ~rr~~ 222 (763)
+++.+
T Consensus 98 E~~yw 102 (121)
T 1owx_A 98 EKEAL 102 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
No 375
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.76 E-value=3.5e-09 Score=94.75 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=72.5
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eecccccccce-eEEEEEecCCccchHHHHHHhcCccccCCCCc-cE
Q 004289 593 TTLMIKNIPNKYTSKMLLAAIDERHKGTYDFI-YLPIDFKNKCN-VGYAFINMTDPSQIVPFYQSFNGKKWEKFNSE-KV 669 (763)
Q Consensus 593 TTvMirNIPnk~t~~~L~~~ide~~~g~yDF~-YlpiDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~-K~ 669 (763)
-.|.||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ ...|||||++++++..|.+.|+|+.|...+.. -.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46999999999999999999997544 5777 78999887655 58999999999999999999999999976544 45
Q ss_pred EEEEeeecc
Q 004289 670 ASLAYARIQ 678 (763)
Q Consensus 670 ~~v~yA~iQ 678 (763)
+.|+||..|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 899999887
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.6e-08 Score=88.23 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=63.2
Q ss_pred cccceeEEeccCC----CCCH----HHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 004289 139 INQGTLVVFNLDS----SVSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKL 210 (763)
Q Consensus 139 ~~~~tLfVgNLp~----svTe----edLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkV 210 (763)
++..||+|.-.+. ++-+ .+|.+.|..||+|..+++... .+||+|.+.++|.+|++ |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 3456899988772 3444 779999999999999998553 39999999999999998 9999999999999
Q ss_pred EeccCc
Q 004289 211 EPSHLR 216 (763)
Q Consensus 211 e~a~~k 216 (763)
.++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999875
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.8e-07 Score=83.30 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=61.9
Q ss_pred cccceeEEeccCCC-----CCH----HHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 004289 139 INQGTLVVFNLDSS-----VSN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIK 209 (763)
Q Consensus 139 ~~~~tLfVgNLp~s-----vTe----edLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~Lk 209 (763)
++..||+|.-++.+ +-+ .+|.+.|..||+|..+|+.... +||+|.+.++|.+||+ |||.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 44569999988743 333 6689999999999999985543 9999999999999998 999999999999
Q ss_pred EEeccC
Q 004289 210 LEPSHL 215 (763)
Q Consensus 210 Ve~a~~ 215 (763)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 998654
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=7.9e-07 Score=82.88 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=61.8
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCC-HHHHHHHHHHhh--hcccCCCcccccc
Q 004289 53 EHPSRTLLLRKINSN-IEDSELKALFEQYGDVRTFYRASKHCGFVTISYYD-IRAARNAMKSLQ--NKLTRSGKLDIHY 127 (763)
Q Consensus 53 e~psRtLfVgNLP~~-vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d-~e~AekAl~~Ln--g~~l~Gr~L~V~~ 127 (763)
-.+...|||+||+.+ +++++|+++|++||+|..|.+. ...-.|||.|.+ .++|+.|++.|+ +..|.+..+.+..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 456689999999999 9999999999999999999962 233379999999 899999999985 5667776666543
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=5.5e-07 Score=79.76 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCCcEEEecCCC----CCCCH----HHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCccc
Q 004289 53 EHPSRTLLLRKIN----SNIED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLD 124 (763)
Q Consensus 53 e~psRtLfVgNLP----~~vtE----eeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~ 124 (763)
.+|.-||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|++ |+|..+.||.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 3566789998776 24444 67889999999999999733 338999999999999997 999999999999
Q ss_pred ccccCC
Q 004289 125 IHYSIP 130 (763)
Q Consensus 125 V~~a~p 130 (763)
|+++.|
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 998765
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.33 E-value=6.5e-07 Score=90.27 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=57.9
Q ss_pred CCCHHHHHHHhcccCceeEeeec---------CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccCc
Q 004289 152 SVSNDELHHIFGVYGEIKEIRET---------PQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHLR 216 (763)
Q Consensus 152 svTeedLrelFs~fGeVkeIrit---------~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~k 216 (763)
+-.+++|++.|++||+|.+|.+. ++.+|++||+|.+.++|.+|++.|||+.+.||+|++.|+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 34578999999999999998762 267899999999999999999999999999999999998743
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.23 E-value=1.5e-06 Score=87.71 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=61.6
Q ss_pred CcEEEecCCC-----CCCCHHHHHHHHhhcCCeEEEEe---------CCCcccEEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 56 SRTLLLRKIN-----SNIEDSELKALFEQYGDVRTFYR---------ASKHCGFVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 56 sRtLfVgNLP-----~~vtEeeL~~lFskfG~I~sv~~---------tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
++.+.+.++- .+-.+++|++.|++||+|.++++ +++++|++||+|.+.++|++|++.|+|..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455554442 23467899999999999999985 237899999999999999999999999999999
Q ss_pred cccccccC
Q 004289 122 KLDIHYSI 129 (763)
Q Consensus 122 ~L~V~~a~ 129 (763)
.|.+.|..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99998864
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=2.9e-06 Score=75.59 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCCCCcEEEecCCCCC-----CCH----HHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCc
Q 004289 52 DEHPSRTLLLRKINSN-----IED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGK 122 (763)
Q Consensus 52 ~e~psRtLfVgNLP~~-----vtE----eeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~ 122 (763)
..+|.-||+|.-++.. +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+|++ |+|+.+.||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 3457789999988743 333 5688999999999999862222 9999999999999998 9999999999
Q ss_pred ccccccC
Q 004289 123 LDIHYSI 129 (763)
Q Consensus 123 L~V~~a~ 129 (763)
|+|++-.
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998743
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=4.5e-05 Score=69.58 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=66.3
Q ss_pred ccceeEEeccCCCCCHHHHHHHhccc-----CceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVY-----GEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~f-----GeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
+.++|-+-|||..+++..|+.+.+.| |.|+.|.+.++ -+=|+|+|.|...|.+|.-+|+|.+|.|++|++.-..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 35689999999999999999999999 99998887654 4579999999999999999999999999999997543
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00013 Score=66.65 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=64.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhhc-----CCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccc
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQY-----GDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDI 125 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFskf-----G~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V 125 (763)
..|+|-+-|||..+++..|+.+.+.| |+|+.+.... ..+-|+|+|.|...|-+|.-+|+|..|.|++|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 36899999999999999999999999 9999998733 4467999999999999999999999999999988
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00085 Score=60.58 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHHhh-----cCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccC
Q 004289 55 PSRTLLLRKINSNIEDSELKALFEQ-----YGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSI 129 (763)
Q Consensus 55 psRtLfVgNLP~~vtEeeL~~lFsk-----fG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~ 129 (763)
..++|.|.|||+.++++.|.-+|+. =|+|..++... +-|+|+|.+.+.|++.++ -..+.|.+..|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 3579999999999999999999996 25999988644 789999999999999995 34678899999996654
Q ss_pred CCCCCCccccccceeEEeccCCCCC
Q 004289 130 PKDNPSEKEINQGTLVVFNLDSSVS 154 (763)
Q Consensus 130 pk~~~~~~~~~~~tLfVgNLp~svT 154 (763)
++ ...+|++.+|++.++
T Consensus 83 ~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CC--------CCCCCCCCSCCCCCC
T ss_pred CC--------CcceEeeecCCCCCC
Confidence 43 355799999998765
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.0015 Score=59.04 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=65.1
Q ss_pred cceeEEeccCCCCCHHHHHHHhcc-----cCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGV-----YGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~-----fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
..+|.|.|||+.+.++.|.-.|+. =|+|..|...+ +-|+|+|.+.+.|++.|+ -....|.+.+|.|.+..+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 458999999999999999999986 36888888755 789999999999999986 225678999999999887
Q ss_pred chhHHHH
Q 004289 216 RGLRKCL 222 (763)
Q Consensus 216 k~~rr~~ 222 (763)
+..+|.+
T Consensus 84 ~~~~r~l 90 (104)
T 2dhx_A 84 RAPARLL 90 (104)
T ss_dssp CCCCCCC
T ss_pred CCcceEe
Confidence 7765533
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.69 E-value=0.002 Score=58.24 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=62.3
Q ss_pred cceeEEeccCCCC-CH----HHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEeccC
Q 004289 141 QGTLVVFNLDSSV-SN----DELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSHL 215 (763)
Q Consensus 141 ~~tLfVgNLp~sv-Te----edLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~~ 215 (763)
.++|+|.||+.++ .. +.++++|..|+++......+--| -..|.|.+.++|.+|-..|++..+.|++|+|-++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4589999998865 32 56789999999887765533333 568999999999999999999999999999999985
Q ss_pred ch
Q 004289 216 RG 217 (763)
Q Consensus 216 k~ 217 (763)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.44 E-value=0.0026 Score=57.51 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=62.1
Q ss_pred cEEEecCCCCCC-CH----HHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCCCcccccccCCC
Q 004289 57 RTLLLRKINSNI-ED----SELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRSGKLDIHYSIPK 131 (763)
Q Consensus 57 RtLfVgNLP~~v-tE----eeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~Gr~L~V~~a~pk 131 (763)
.+|+|.||+.+| +. +.++++|.+|+++.+... -++-.=..|.|.+.++|.+|-..|++..+.|++++|-|+.+-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 589999999876 33 466789999999988764 345456799999999999999999999999999999998754
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.06 E-value=0.022 Score=52.69 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=62.4
Q ss_pred cccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-eEEEEEeccCch
Q 004289 139 INQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-KQIKLEPSHLRG 217 (763)
Q Consensus 139 ~~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~G-r~LkVe~a~~k~ 217 (763)
.....|.|.+.|+.. ...+.+.|++||+|.+... .....+-.|+|.+..+|++||. .||..|.| ..|=|.+...+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCHH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCHH
Confidence 446689999999985 5667788999999999886 4556899999999999999997 69999985 667777766544
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.77 E-value=0.032 Score=49.93 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=45.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhh
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 114 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Ln 114 (763)
.+.++| ++|+.+.-.||.++|+.||.|.--.+ ..-.|||.|.+++.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 357777 99999999999999999995543333 24579999999999999998765
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.38 E-value=0.071 Score=47.07 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=56.1
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeee-------cCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-----eEEEE
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRE-------TPQKIHQKYIEFYDTRAAEAALRELNSRYIAG-----KQIKL 210 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIri-------t~~skG~aFVeF~d~esA~kAL~~LnG~~I~G-----r~LkV 210 (763)
+|+|++||+.+|++++.+.++.+.++..... .+..-.-|+|.|.+.+++..-.+.++|..+-+ .+-.|
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~V 82 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIV 82 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEE
Confidence 6999999999999999999999887765443 11122479999999999999999999987753 24455
Q ss_pred Eecc
Q 004289 211 EPSH 214 (763)
Q Consensus 211 e~a~ 214 (763)
++|-
T Consensus 83 E~AP 86 (91)
T 1uw4_A 83 EFAP 86 (91)
T ss_dssp EECS
T ss_pred EEcC
Confidence 6553
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.91 E-value=0.15 Score=47.12 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=54.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhhcccCC-Ccccc
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQNKLTRS-GKLDI 125 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng~~l~G-r~L~V 125 (763)
.+-|.|-+.|+.. -+.|...|++||+|.+... .....+..|.|.+..+|++||. .||+.+.+ ..|=|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 5688888999885 6777789999999999887 3456799999999999999995 58888864 33444
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.64 E-value=0.098 Score=46.79 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=42.9
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
.++| +.|+.+...||.++|+.||.|.--.+ ....|||-|.+++.|..|++.+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 5555 99999999999999999985422122 24589999999999999999764
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.45 E-value=0.036 Score=62.36 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=44.1
Q ss_pred ccceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHH
Q 004289 140 NQGTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALR 196 (763)
Q Consensus 140 ~~~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~ 196 (763)
.++.|+|. .+..+++.+|.+.|++||.|..+........|+.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 46799997 799999999999999999999998877777799999999999997764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.23 E-value=0.034 Score=62.57 Aligned_cols=55 Identities=11% Similarity=0.295 Sum_probs=42.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 004289 56 SRTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMK 111 (763)
Q Consensus 56 sRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~ 111 (763)
.|+|||. .|..+++.+|.++|++||+|..+.......-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 5799997 899999999999999999999998754445699999999999987764
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.08 E-value=0.067 Score=47.95 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=43.1
Q ss_pred eeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhC
Q 004289 143 TLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELN 199 (763)
Q Consensus 143 tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~Ln 199 (763)
.++| +.|..+...||.++|+.||.|.--.+ ....|||-|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999995432122 24589999999999999999875
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.04 E-value=0.078 Score=47.54 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=44.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhh
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQ 114 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Ln 114 (763)
..++| ++|+.+.-.||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 35666 99999999999999999995544334 34589999999999999998765
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.57 E-value=0.2 Score=47.12 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=56.4
Q ss_pred cceeEEeccCCCCCHHHHHHHhcccCceeE-eeec----------------C--CcccEEEEEEcCHHHHHHHHHHhCCC
Q 004289 141 QGTLVVFNLDSSVSNDELHHIFGVYGEIKE-IRET----------------P--QKIHQKYIEFYDTRAAEAALRELNSR 201 (763)
Q Consensus 141 ~~tLfVgNLp~svTeedLrelFs~fGeVke-Irit----------------~--~skG~aFVeF~d~esA~kAL~~LnG~ 201 (763)
...|.|.+.|++.+. .+.+.|++||.|.+ +..+ + ...++..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 346888888777554 56668999999987 3221 1 135688999999999999997 7999
Q ss_pred eeCCeEEEEEeccC
Q 004289 202 YIAGKQIKLEPSHL 215 (763)
Q Consensus 202 ~I~Gr~LkVe~a~~ 215 (763)
.|.|.-|=|.+.++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888988863
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.69 E-value=0.16 Score=45.43 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=51.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-eCCC------cccEEEEEeCCHHHHHHHHHHhhhcccCCC
Q 004289 54 HPSRTLLLRKINSNIEDSELKALFEQYGDVRTFY-RASK------HCGFVTISYYDIRAARNAMKSLQNKLTRSG 121 (763)
Q Consensus 54 ~psRtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-~tgk------skGfAFV~F~d~e~AekAl~~Lng~~l~Gr 121 (763)
+.+-+|.|+.||+.+||+++.+.+...-++...+ +.++ .-.-|||.|.+.++.....+..+|+.+.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3466899999999999999988887665543222 1111 123599999999999999999999887543
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=83.49 E-value=0.79 Score=43.03 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=50.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEE-eC-------------C-----CcccEEEEEeCCHHHHHHHHHHhhhcc
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFY-RA-------------S-----KHCGFVTISYYDIRAARNAMKSLQNKL 117 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~-~t-------------g-----kskGfAFV~F~d~e~AekAl~~Lng~~ 117 (763)
..|.|=+.|++. ...+.+.|++||.|.+-. .. . ....+..|+|.+..+|++|+. .||+.
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 456677787555 456668999999998732 11 0 135688999999999999995 69998
Q ss_pred cCCCccccccc
Q 004289 118 TRSGKLDIHYS 128 (763)
Q Consensus 118 l~Gr~L~V~~a 128 (763)
|.|.-|=|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 98875555443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.86 E-value=6.3 Score=44.71 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=46.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhcCCeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh
Q 004289 57 RTLLLRKINSNIEDSELKALFEQYGDVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115 (763)
Q Consensus 57 RtLfVgNLP~~vtEeeL~~lFskfG~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng 115 (763)
..++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.++|..+++++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 478887 9999999999999999997655555 445799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.72 E-value=12 Score=42.37 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=44.7
Q ss_pred ceeEEeccCCCCCHHHHHHHhcccCceeEeeecCCcccEEEEEEcCHHHHHHHHHHhCC
Q 004289 142 GTLVVFNLDSSVSNDELHHIFGVYGEIKEIRETPQKIHQKYIEFYDTRAAEAALRELNS 200 (763)
Q Consensus 142 ~tLfVgNLp~svTeedLrelFs~fGeVkeIrit~~skG~aFVeF~d~esA~kAL~~LnG 200 (763)
..++|+ ++..+...+|.++|+.||.|.-.++ ....+||.|.+.+.|..++++++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 366666 8999999999999999996533333 346799999999999999998853
No 403
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.86 E-value=1.8e+02 Score=24.99 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=27.2
Q ss_pred CeEEEEeCCCcccEEEEEeCCHHHHHHHHHHhhh
Q 004289 82 DVRTFYRASKHCGFVTISYYDIRAARNAMKSLQN 115 (763)
Q Consensus 82 ~I~sv~~tgkskGfAFV~F~d~e~AekAl~~Lng 115 (763)
+|.++.+.....||.||++...++...+++...+
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 4777777667999999999999888888865443
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.84 E-value=44 Score=27.30 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=36.8
Q ss_pred CCHHHHHHHhcccCc-----eeEeeecCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q 004289 153 VSNDELHHIFGVYGE-----IKEIRETPQKIHQKYIEFYDTRAAEAALRELNSRYIAGKQIKLEPSH 214 (763)
Q Consensus 153 vTeedLrelFs~fGe-----VkeIrit~~skG~aFVeF~d~esA~kAL~~LnG~~I~Gr~LkVe~a~ 214 (763)
+...+|...+..-+. |-.|++ ...|.||+-.. +.|.++++.|++..+.|++++|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i---~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITI---MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEE---CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEE---eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 445555555543333 333555 34589998874 56788899999999999999998765
Done!