Query 004290
Match_columns 763
No_of_seqs 447 out of 3257
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 20:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1310 WD40 repeat protein [G 100.0 3.1E-75 6.7E-80 578.5 43.3 738 1-763 1-758 (758)
2 KOG0271 Notchless-like WD40 re 100.0 1.2E-49 2.6E-54 380.3 25.7 332 42-697 107-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.4E-46 1.4E-50 359.9 24.3 205 47-310 172-376 (459)
4 KOG0271 Notchless-like WD40 re 100.0 8.1E-45 1.7E-49 347.3 19.5 345 83-716 106-456 (480)
5 KOG0286 G-protein beta subunit 100.0 1E-40 2.3E-45 309.0 31.2 216 41-311 46-261 (343)
6 KOG0315 G-protein beta subunit 100.0 1.6E-40 3.5E-45 300.7 30.4 189 62-310 10-198 (311)
7 KOG0319 WD40-repeat-containing 100.0 7.3E-40 1.6E-44 338.5 28.3 401 28-714 84-592 (775)
8 KOG0293 WD40 repeat-containing 100.0 1.7E-39 3.6E-44 313.8 25.6 208 41-310 215-426 (519)
9 KOG1334 WD40 repeat protein [G 100.0 2.7E-40 5.9E-45 326.2 19.1 400 9-741 101-501 (559)
10 KOG0282 mRNA splicing factor [ 100.0 6.3E-39 1.4E-43 316.7 20.0 210 41-310 205-416 (503)
11 KOG0265 U5 snRNP-specific prot 100.0 2.5E-37 5.5E-42 287.8 27.6 209 41-310 38-247 (338)
12 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-38 5.6E-43 307.2 21.2 261 90-715 172-434 (459)
13 KOG0295 WD40 repeat-containing 100.0 4.7E-37 1E-41 292.9 24.0 222 30-311 88-324 (406)
14 KOG0284 Polyadenylation factor 100.0 1.5E-37 3.2E-42 300.4 18.7 199 50-310 96-295 (464)
15 KOG0318 WD40 repeat stress pro 100.0 2.2E-36 4.9E-41 301.0 26.2 250 37-313 46-354 (603)
16 KOG0279 G protein beta subunit 100.0 5.7E-35 1.2E-39 269.5 30.3 214 40-312 5-225 (315)
17 KOG0316 Conserved WD40 repeat- 100.0 2.1E-35 4.4E-40 265.4 26.1 208 41-311 8-215 (307)
18 KOG0315 G-protein beta subunit 100.0 1.1E-34 2.3E-39 263.0 29.0 233 20-310 12-246 (311)
19 KOG0263 Transcription initiati 100.0 4.2E-36 9E-41 314.6 20.7 196 44-311 372-567 (707)
20 KOG0266 WD40 repeat-containing 100.0 1.4E-34 3.1E-39 313.7 31.6 212 41-311 149-366 (456)
21 KOG0318 WD40 repeat stress pro 100.0 1.4E-33 3.1E-38 281.1 35.4 262 25-311 167-519 (603)
22 KOG0285 Pleiotropic regulator 100.0 7.7E-35 1.7E-39 276.7 24.0 212 38-311 139-350 (460)
23 KOG0645 WD40 repeat protein [G 100.0 7.6E-34 1.7E-38 260.9 29.0 219 40-310 4-226 (312)
24 KOG0281 Beta-TrCP (transducin 100.0 1.1E-35 2.3E-40 281.2 15.4 195 49-311 196-390 (499)
25 KOG0319 WD40-repeat-containing 100.0 5.1E-34 1.1E-38 295.4 27.5 234 27-310 302-536 (775)
26 KOG0306 WD40-repeat-containing 100.0 1.3E-34 2.9E-39 299.6 22.4 434 26-713 85-636 (888)
27 KOG0296 Angio-associated migra 100.0 5.4E-33 1.2E-37 265.5 29.5 212 41-312 55-266 (399)
28 KOG1446 Histone H3 (Lys4) meth 100.0 3.4E-32 7.4E-37 256.6 33.4 216 38-311 2-219 (311)
29 cd00200 WD40 WD40 domain, foun 100.0 2.3E-32 4.9E-37 281.4 34.6 207 43-310 2-208 (289)
30 KOG0273 Beta-transducin family 100.0 8E-33 1.7E-37 272.4 28.4 228 44-334 173-414 (524)
31 KOG0286 G-protein beta subunit 100.0 4.8E-33 1E-37 258.2 24.6 227 24-311 73-305 (343)
32 PLN00181 protein SPA1-RELATED; 100.0 5.2E-32 1.1E-36 316.3 38.0 204 46-310 479-691 (793)
33 KOG0313 Microtubule binding pr 100.0 2.8E-32 6.2E-37 261.7 25.2 229 48-311 103-332 (423)
34 KOG0279 G protein beta subunit 100.0 5.6E-32 1.2E-36 249.7 26.2 228 21-311 31-264 (315)
35 KOG0278 Serine/threonine kinas 100.0 1.1E-32 2.4E-37 249.9 18.6 206 43-311 7-215 (334)
36 KOG0306 WD40-repeat-containing 100.0 1.6E-31 3.5E-36 276.8 28.2 215 44-310 367-581 (888)
37 KOG0276 Vesicle coat complex C 100.0 9E-32 2E-36 273.0 25.4 212 40-310 3-216 (794)
38 KOG0291 WD40-repeat-containing 100.0 1.2E-30 2.7E-35 270.4 32.6 256 28-311 117-424 (893)
39 KOG0295 WD40 repeat-containing 100.0 9.8E-32 2.1E-36 256.7 21.3 188 85-332 101-288 (406)
40 KOG0292 Vesicle coat complex C 100.0 2.6E-31 5.6E-36 279.3 25.7 225 45-310 4-237 (1202)
41 KOG0263 Transcription initiati 100.0 1.1E-31 2.3E-36 281.6 21.1 210 41-311 442-651 (707)
42 KOG0640 mRNA cleavage stimulat 100.0 1.7E-30 3.6E-35 242.7 22.7 215 44-312 106-338 (430)
43 KOG0275 Conserved WD40 repeat- 100.0 7E-31 1.5E-35 246.3 18.6 205 48-310 211-424 (508)
44 KOG0288 WD40 repeat protein Ti 100.0 3E-31 6.4E-36 257.3 16.5 205 42-311 167-373 (459)
45 KOG0283 WD40 repeat-containing 100.0 1.7E-30 3.8E-35 275.0 22.0 215 41-310 257-533 (712)
46 KOG0277 Peroxisomal targeting 100.0 3.1E-30 6.7E-35 234.9 20.6 202 54-311 12-223 (311)
47 KOG0291 WD40-repeat-containing 100.0 2.2E-28 4.8E-33 253.8 36.6 383 27-708 34-431 (893)
48 KOG0284 Polyadenylation factor 100.0 6.9E-31 1.5E-35 254.3 16.1 160 91-311 94-254 (464)
49 KOG1407 WD40 repeat protein [F 100.0 5.4E-29 1.2E-33 227.8 26.7 206 44-310 14-220 (313)
50 KOG0265 U5 snRNP-specific prot 100.0 2.5E-29 5.5E-34 234.5 23.2 162 90-310 44-205 (338)
51 KOG0268 Sof1-like rRNA process 100.0 3.4E-30 7.4E-35 245.8 17.6 202 42-310 58-260 (433)
52 KOG0281 Beta-TrCP (transducin 100.0 2E-30 4.3E-35 245.6 14.3 218 24-311 213-430 (499)
53 KOG1063 RNA polymerase II elon 100.0 3.2E-29 6.9E-34 258.0 23.5 442 22-701 163-650 (764)
54 KOG1408 WD40 repeat protein [F 100.0 2.7E-29 5.9E-34 258.2 22.3 103 599-703 614-717 (1080)
55 KOG0276 Vesicle coat complex C 100.0 3.7E-29 8E-34 254.2 20.8 251 26-336 33-284 (794)
56 KOG0274 Cdc4 and related F-box 100.0 4.5E-28 9.7E-33 261.3 29.5 200 44-311 201-402 (537)
57 KOG0285 Pleiotropic regulator 100.0 7.5E-29 1.6E-33 236.1 20.3 163 90-312 148-310 (460)
58 KOG0266 WD40 repeat-containing 100.0 5.1E-28 1.1E-32 262.6 28.7 165 90-311 156-320 (456)
59 KOG0641 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 206.7 32.3 223 39-311 22-263 (350)
60 KOG0772 Uncharacterized conser 100.0 3.3E-28 7.1E-33 242.1 23.8 232 42-312 159-397 (641)
61 PLN00181 protein SPA1-RELATED; 100.0 2.4E-27 5.2E-32 277.2 34.7 188 71-310 457-649 (793)
62 KOG0645 WD40 repeat protein [G 100.0 2.5E-27 5.5E-32 218.1 26.1 228 22-310 31-262 (312)
63 KOG0292 Vesicle coat complex C 100.0 1.8E-28 3.9E-33 258.0 21.1 161 90-310 6-166 (1202)
64 KOG0296 Angio-associated migra 100.0 1.7E-27 3.7E-32 228.0 25.6 251 21-311 79-358 (399)
65 KOG0273 Beta-transducin family 100.0 1.2E-27 2.5E-32 236.1 24.0 249 23-336 252-508 (524)
66 KOG1539 WD repeat protein [Gen 100.0 1E-26 2.2E-31 244.3 29.8 257 26-311 222-525 (910)
67 KOG0321 WD40 repeat-containing 100.0 2E-27 4.4E-32 242.5 23.8 235 49-310 46-302 (720)
68 KOG0643 Translation initiation 100.0 2.5E-26 5.5E-31 210.9 27.1 237 45-336 5-246 (327)
69 KOG0316 Conserved WD40 repeat- 100.0 3.7E-27 8E-32 212.4 20.5 250 23-336 34-285 (307)
70 PTZ00421 coronin; Provisional 100.0 1.1E-25 2.3E-30 243.0 32.4 212 49-311 19-247 (493)
71 KOG0300 WD40 repeat-containing 100.0 1.2E-26 2.6E-31 217.5 21.4 224 38-312 136-389 (481)
72 KOG1273 WD40 repeat protein [G 100.0 3.3E-26 7.1E-31 214.8 23.8 202 53-310 26-227 (405)
73 KOG0973 Histone transcription 99.9 1.8E-26 3.8E-31 250.8 25.1 237 50-331 13-275 (942)
74 cd00200 WD40 WD40 domain, foun 99.9 8.5E-26 1.8E-30 232.3 29.2 163 87-310 4-166 (289)
75 KOG0305 Anaphase promoting com 99.9 2.3E-26 5E-31 238.2 24.5 242 6-310 174-420 (484)
76 KOG0277 Peroxisomal targeting 99.9 3.5E-27 7.6E-32 215.1 15.2 228 24-308 79-308 (311)
77 KOG0305 Anaphase promoting com 99.9 2.3E-25 4.9E-30 230.9 28.8 195 54-312 181-379 (484)
78 KOG0301 Phospholipase A2-activ 99.9 1.9E-25 4.2E-30 230.4 27.9 205 39-310 3-209 (745)
79 PTZ00421 coronin; Provisional 99.9 1.9E-25 4.2E-30 241.0 28.8 231 44-332 69-314 (493)
80 KOG0274 Cdc4 and related F-box 99.9 1.2E-25 2.5E-30 242.7 26.9 219 24-312 224-444 (537)
81 KOG0310 Conserved WD40 repeat- 99.9 6.7E-26 1.5E-30 225.3 22.9 201 50-312 26-228 (487)
82 KOG0283 WD40 repeat-containing 99.9 7E-26 1.5E-30 240.3 24.1 175 85-311 259-483 (712)
83 KOG0289 mRNA splicing factor [ 99.9 2.6E-25 5.6E-30 217.4 25.7 202 51-311 220-421 (506)
84 KOG0313 Microtubule binding pr 99.9 3.2E-25 6.9E-30 213.5 23.0 182 91-312 103-292 (423)
85 KOG0294 WD40 repeat-containing 99.9 7.4E-25 1.6E-29 206.1 24.6 206 40-310 33-238 (362)
86 KOG0647 mRNA export protein (c 99.9 6.3E-25 1.4E-29 205.4 23.8 201 49-311 26-230 (347)
87 KOG0278 Serine/threonine kinas 99.9 1.6E-26 3.5E-31 209.9 12.7 211 38-312 47-257 (334)
88 KOG1539 WD repeat protein [Gen 99.9 4.7E-25 1E-29 231.9 25.1 253 24-312 178-481 (910)
89 KOG0282 mRNA splicing factor [ 99.9 6.3E-26 1.4E-30 225.0 16.1 260 17-333 226-486 (503)
90 PTZ00420 coronin; Provisional 99.9 2.4E-24 5.1E-29 233.2 29.4 247 25-332 51-317 (568)
91 KOG4227 WD40 repeat protein [G 99.9 6.5E-25 1.4E-29 211.3 21.9 247 13-310 21-275 (609)
92 PTZ00420 coronin; Provisional 99.9 8.7E-24 1.9E-28 228.9 33.3 192 68-310 50-249 (568)
93 KOG0299 U3 snoRNP-associated p 99.9 1.9E-24 4.2E-29 213.3 25.3 208 43-312 135-359 (479)
94 KOG1407 WD40 repeat protein [F 99.9 6.7E-25 1.5E-29 201.1 20.1 161 90-309 17-177 (313)
95 KOG1036 Mitotic spindle checkp 99.9 1.8E-23 4E-28 196.7 27.7 196 50-310 13-208 (323)
96 KOG1063 RNA polymerase II elon 99.9 2E-23 4.3E-28 215.6 28.4 244 26-309 32-391 (764)
97 KOG0308 Conserved WD40 repeat- 99.9 1.3E-24 2.9E-29 222.6 19.6 215 48-310 19-244 (735)
98 KOG0264 Nucleosome remodeling 99.9 7.1E-24 1.5E-28 209.6 24.0 184 90-311 121-305 (422)
99 KOG0288 WD40 repeat protein Ti 99.9 3.7E-25 7.9E-30 215.2 14.5 263 14-337 183-447 (459)
100 KOG1332 Vesicle coat complex C 99.9 3E-24 6.4E-29 195.0 19.4 175 86-310 4-194 (299)
101 KOG0289 mRNA splicing factor [ 99.9 6.5E-24 1.4E-28 207.6 23.2 223 26-310 239-463 (506)
102 KOG0643 Translation initiation 99.9 2.6E-24 5.6E-29 197.8 19.1 268 7-310 9-318 (327)
103 KOG4283 Transcription-coupled 99.9 1.3E-23 2.9E-28 195.5 23.8 222 46-312 39-279 (397)
104 KOG0293 WD40 repeat-containing 99.9 3.7E-24 7.9E-29 207.9 20.4 165 90-310 221-385 (519)
105 KOG0268 Sof1-like rRNA process 99.9 1.6E-24 3.5E-29 207.2 16.3 221 23-311 84-304 (433)
106 KOG0650 WD40 repeat nucleolar 99.9 4E-23 8.6E-28 209.7 26.7 218 42-311 392-639 (733)
107 KOG0275 Conserved WD40 repeat- 99.9 3.1E-24 6.7E-29 201.8 15.7 257 22-333 229-491 (508)
108 KOG1446 Histone H3 (Lys4) meth 99.9 4.2E-22 9E-27 188.6 29.5 160 90-311 11-172 (311)
109 KOG0264 Nucleosome remodeling 99.9 1.7E-23 3.7E-28 206.9 19.7 243 27-310 146-405 (422)
110 KOG2106 Uncharacterized conser 99.9 8.8E-22 1.9E-26 196.1 31.3 270 43-333 97-419 (626)
111 KOG0310 Conserved WD40 repeat- 99.9 1.1E-23 2.4E-28 209.6 17.1 248 28-337 48-295 (487)
112 KOG2096 WD40 repeat protein [G 99.9 2.5E-22 5.4E-27 189.1 25.0 224 43-310 79-309 (420)
113 KOG2445 Nuclear pore complex c 99.9 2.9E-22 6.3E-27 188.1 25.2 194 85-310 5-208 (361)
114 KOG0294 WD40 repeat-containing 99.9 2.5E-22 5.3E-27 189.2 24.6 182 65-310 4-198 (362)
115 KOG0640 mRNA cleavage stimulat 99.9 1.2E-23 2.5E-28 197.1 15.5 89 620-712 258-348 (430)
116 KOG1332 Vesicle coat complex C 99.9 4.6E-23 9.9E-28 187.3 18.4 239 23-310 28-287 (299)
117 KOG0299 U3 snoRNP-associated p 99.9 1.1E-22 2.4E-27 200.9 19.6 237 47-334 199-438 (479)
118 KOG0300 WD40 repeat-containing 99.9 8.5E-23 1.8E-27 191.7 17.6 246 23-332 165-455 (481)
119 KOG0308 Conserved WD40 repeat- 99.9 5.4E-23 1.2E-27 210.8 17.4 238 24-312 43-288 (735)
120 KOG2919 Guanine nucleotide-bin 99.9 6.4E-22 1.4E-26 186.8 23.0 209 52-311 51-283 (406)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-21 8E-26 200.2 31.5 186 62-311 1-189 (300)
122 KOG1445 Tumor-specific antigen 99.9 3.4E-21 7.4E-26 196.4 29.8 217 39-312 68-296 (1012)
123 KOG0639 Transducin-like enhanc 99.9 2.1E-22 4.6E-27 200.1 20.4 212 38-310 408-623 (705)
124 KOG0269 WD40 repeat-containing 99.9 2E-22 4.3E-27 210.8 20.4 207 51-311 40-252 (839)
125 KOG0772 Uncharacterized conser 99.9 1E-22 2.3E-27 203.2 17.2 265 23-341 184-477 (641)
126 KOG2106 Uncharacterized conser 99.9 3.5E-21 7.5E-26 191.9 27.7 234 44-335 239-505 (626)
127 KOG0641 WD40 repeat protein [G 99.9 7.7E-21 1.7E-25 170.4 26.4 209 47-310 86-304 (350)
128 KOG4328 WD40 protein [Function 99.9 2.2E-21 4.9E-26 191.5 24.7 218 40-309 176-399 (498)
129 KOG0321 WD40 repeat-containing 99.9 1.7E-21 3.8E-26 199.5 23.3 267 9-311 55-349 (720)
130 KOG0647 mRNA export protein (c 99.9 2.9E-21 6.3E-26 181.0 22.8 161 90-311 24-186 (347)
131 KOG0646 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 196.0 19.1 197 62-310 50-248 (476)
132 KOG0973 Histone transcription 99.9 2E-21 4.3E-26 211.8 23.5 236 41-310 60-356 (942)
133 KOG0269 WD40 repeat-containing 99.9 2E-22 4.4E-27 210.7 14.6 223 52-331 89-319 (839)
134 KOG0302 Ribosome Assembly prot 99.9 1.3E-21 2.9E-26 188.4 18.2 217 44-311 145-380 (440)
135 KOG0301 Phospholipase A2-activ 99.9 4.9E-21 1.1E-25 198.2 22.9 163 83-308 5-168 (745)
136 KOG0267 Microtubule severing p 99.9 1.2E-22 2.7E-27 210.6 11.1 185 60-311 2-186 (825)
137 KOG1274 WD40 repeat protein [G 99.9 2.3E-20 4.9E-25 199.3 28.5 207 48-310 11-219 (933)
138 KOG0646 WD40 repeat protein [G 99.9 1.3E-20 2.7E-25 186.9 19.7 245 50-332 81-330 (476)
139 KOG0267 Microtubule severing p 99.9 3.1E-22 6.8E-27 207.6 8.7 216 23-301 45-260 (825)
140 KOG2055 WD40 repeat protein [G 99.9 3.5E-20 7.7E-25 183.2 22.6 202 50-310 213-418 (514)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-19 8.2E-24 185.0 31.3 228 24-311 7-239 (300)
142 KOG1408 WD40 repeat protein [F 99.9 1.5E-20 3.2E-25 194.4 19.0 213 50-311 459-673 (1080)
143 KOG0307 Vesicle coat complex C 99.9 6.4E-21 1.4E-25 208.7 16.4 209 54-310 10-241 (1049)
144 KOG0270 WD40 repeat-containing 99.8 2.5E-20 5.5E-25 183.6 17.1 234 24-312 198-452 (463)
145 KOG2048 WD40 repeat protein [G 99.8 3.8E-18 8.3E-23 176.7 33.3 254 24-331 43-301 (691)
146 KOG2445 Nuclear pore complex c 99.8 6.5E-19 1.4E-23 165.7 24.7 259 47-310 10-319 (361)
147 KOG0322 G-protein beta subunit 99.8 5.7E-20 1.2E-24 169.1 17.2 229 41-310 5-236 (323)
148 KOG2048 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 180.5 28.7 211 49-311 24-235 (691)
149 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-19 2.5E-24 184.3 18.6 236 33-311 277-521 (577)
150 KOG0302 Ribosome Assembly prot 99.8 6.7E-20 1.4E-24 176.8 15.5 228 38-302 199-432 (440)
151 KOG1036 Mitotic spindle checkp 99.8 7.8E-19 1.7E-23 165.7 22.0 263 26-342 33-295 (323)
152 KOG1034 Transcriptional repres 99.8 5.6E-19 1.2E-23 167.6 20.9 226 46-308 34-278 (385)
153 KOG2096 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 163.5 21.6 193 74-310 63-259 (420)
154 KOG1009 Chromatin assembly com 99.8 2E-18 4.3E-23 168.5 21.5 213 50-298 13-249 (434)
155 KOG1274 WD40 repeat protein [G 99.8 5.5E-18 1.2E-22 181.3 26.7 161 90-311 10-170 (933)
156 KOG4378 Nuclear protein COP1 [ 99.8 3.9E-19 8.5E-24 176.8 16.5 264 8-333 34-305 (673)
157 KOG1188 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 160.5 22.4 199 63-312 41-245 (376)
158 KOG4378 Nuclear protein COP1 [ 99.8 5.9E-18 1.3E-22 168.5 21.9 223 28-310 12-240 (673)
159 KOG4283 Transcription-coupled 99.8 9.2E-18 2E-22 156.8 21.6 180 47-250 98-280 (397)
160 KOG0270 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 168.8 16.9 202 54-312 177-407 (463)
161 KOG1007 WD repeat protein TSSC 99.8 1.4E-17 3.1E-22 155.2 19.0 237 38-310 110-362 (370)
162 KOG0307 Vesicle coat complex C 99.8 3.2E-18 6.9E-23 187.8 15.3 262 18-334 29-309 (1049)
163 KOG0644 Uncharacterized conser 99.8 1.5E-18 3.2E-23 182.9 12.0 180 28-247 168-347 (1113)
164 KOG0303 Actin-binding protein 99.8 1.7E-17 3.6E-22 161.2 18.2 231 43-332 74-320 (472)
165 KOG0290 Conserved WD40 repeat- 99.8 1.6E-17 3.6E-22 155.0 17.3 233 48-332 94-346 (364)
166 KOG2055 WD40 repeat protein [G 99.8 3E-17 6.6E-22 162.6 19.9 237 19-310 226-468 (514)
167 KOG1538 Uncharacterized conser 99.8 7.6E-17 1.6E-21 165.9 23.0 176 52-292 14-189 (1081)
168 KOG1273 WD40 repeat protein [G 99.8 9.4E-17 2E-21 151.6 20.0 269 23-339 40-311 (405)
169 KOG1007 WD repeat protein TSSC 99.8 1.5E-16 3.3E-21 148.4 20.8 215 44-310 57-290 (370)
170 KOG1517 Guanine nucleotide bin 99.7 1.3E-16 2.9E-21 172.5 23.2 221 48-310 1062-1288(1387)
171 KOG0639 Transducin-like enhanc 99.7 1.2E-17 2.5E-22 166.6 12.8 221 24-308 483-703 (705)
172 KOG1034 Transcriptional repres 99.7 2.9E-17 6.2E-22 156.1 14.4 240 48-311 87-339 (385)
173 KOG1963 WD40 repeat protein [G 99.7 6.5E-15 1.4E-19 157.9 33.5 239 26-312 35-378 (792)
174 KOG0642 Cell-cycle nuclear pro 99.7 4.2E-17 9E-22 165.8 16.1 140 90-250 291-430 (577)
175 COG2319 FOG: WD40 repeat [Gene 99.7 7.9E-15 1.7E-19 160.1 35.8 208 45-311 60-273 (466)
176 KOG4328 WD40 protein [Function 99.7 7.9E-17 1.7E-21 159.6 17.1 261 27-337 209-480 (498)
177 KOG1240 Protein kinase contain 99.7 1.9E-15 4.1E-20 166.3 26.3 226 37-312 1035-1276(1431)
178 KOG1188 WD40 repeat protein [G 99.7 2.4E-16 5.3E-21 150.8 16.3 250 27-310 49-347 (376)
179 KOG0650 WD40 repeat nucleolar 99.7 5.1E-16 1.1E-20 158.5 19.6 187 88-310 395-596 (733)
180 COG2319 FOG: WD40 repeat [Gene 99.7 5.4E-14 1.2E-18 153.5 37.1 228 26-313 85-318 (466)
181 KOG0303 Actin-binding protein 99.7 9.4E-16 2E-20 149.2 16.6 177 90-317 78-257 (472)
182 KOG1587 Cytoplasmic dynein int 99.7 4.8E-14 1E-18 151.5 31.2 205 72-309 222-428 (555)
183 PRK11028 6-phosphogluconolacto 99.7 9.1E-14 2E-18 146.3 31.6 195 65-310 5-206 (330)
184 KOG0290 Conserved WD40 repeat- 99.7 2.7E-15 5.8E-20 140.4 17.4 205 48-300 148-357 (364)
185 KOG1009 Chromatin assembly com 99.7 3.7E-15 8.1E-20 145.9 17.2 257 21-311 29-374 (434)
186 KOG1587 Cytoplasmic dynein int 99.7 3.1E-14 6.8E-19 152.9 25.7 238 29-311 223-474 (555)
187 KOG0644 Uncharacterized conser 99.6 5.1E-16 1.1E-20 164.0 9.6 157 90-306 187-343 (1113)
188 KOG1538 Uncharacterized conser 99.6 1.2E-14 2.5E-19 150.0 19.0 221 27-311 32-295 (1081)
189 KOG1445 Tumor-specific antigen 99.6 6E-15 1.3E-19 151.3 14.5 206 50-312 627-847 (1012)
190 KOG1523 Actin-related protein 99.6 1.1E-13 2.4E-18 131.7 21.9 227 49-312 9-239 (361)
191 KOG0771 Prolactin regulatory e 99.6 1.1E-14 2.3E-19 143.9 15.3 202 54-310 148-355 (398)
192 KOG2919 Guanine nucleotide-bin 99.6 2.8E-14 6E-19 135.6 17.2 239 51-340 105-359 (406)
193 KOG1524 WD40 repeat-containing 99.6 4.6E-15 1E-19 149.6 12.6 193 37-306 91-283 (737)
194 PRK11028 6-phosphogluconolacto 99.6 1.9E-12 4.1E-17 136.2 32.0 241 26-310 10-259 (330)
195 KOG1310 WD40 repeat protein [G 99.6 7.3E-13 1.6E-17 134.3 23.8 223 23-251 67-308 (758)
196 KOG4497 Uncharacterized conser 99.6 2.1E-13 4.5E-18 129.9 18.7 210 55-310 13-241 (447)
197 PRK01742 tolB translocation pr 99.6 2.1E-13 4.6E-18 148.0 21.5 174 71-311 183-363 (429)
198 KOG1517 Guanine nucleotide bin 99.6 2.2E-13 4.8E-18 148.0 21.0 265 2-311 1103-1383(1387)
199 KOG0649 WD40 repeat protein [G 99.6 3.8E-13 8.3E-18 122.9 19.0 231 52-330 12-255 (325)
200 KOG0322 G-protein beta subunit 99.5 5.1E-14 1.1E-18 130.2 12.7 247 15-308 22-322 (323)
201 KOG4227 WD40 repeat protein [G 99.5 7.2E-13 1.6E-17 128.8 20.9 273 24-310 74-388 (609)
202 KOG1240 Protein kinase contain 99.5 1.8E-12 3.9E-17 143.4 26.3 193 77-311 1034-1227(1431)
203 KOG2110 Uncharacterized conser 99.5 5.8E-12 1.3E-16 122.5 25.5 217 51-310 88-331 (391)
204 PRK01742 tolB translocation pr 99.5 5.8E-13 1.3E-17 144.6 20.7 235 28-332 184-426 (429)
205 KOG0771 Prolactin regulatory e 99.5 3.3E-13 7.3E-18 133.4 15.6 74 625-702 283-357 (398)
206 KOG1963 WD40 repeat protein [G 99.5 3.2E-12 7E-17 137.5 23.6 178 48-254 203-383 (792)
207 KOG2110 Uncharacterized conser 99.5 2.3E-11 5.1E-16 118.3 26.8 194 53-311 49-250 (391)
208 KOG1354 Serine/threonine prote 99.5 4.7E-12 1E-16 121.7 21.6 234 50-312 25-304 (433)
209 KOG2394 WD40 protein DMR-N9 [G 99.5 3.9E-12 8.4E-17 129.1 20.7 70 634-703 339-456 (636)
210 KOG0649 WD40 repeat protein [G 99.5 2.4E-12 5.3E-17 117.8 17.4 211 41-310 53-275 (325)
211 KOG1409 Uncharacterized conser 99.5 3.3E-12 7.2E-17 122.8 18.1 245 38-312 12-273 (404)
212 KOG3881 Uncharacterized conser 99.5 9.9E-12 2.1E-16 121.7 20.9 78 623-704 247-325 (412)
213 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 124.7 23.7 229 30-312 32-261 (703)
214 PF02239 Cytochrom_D1: Cytochr 99.4 5.9E-11 1.3E-15 124.6 26.9 198 63-312 6-205 (369)
215 KOG1523 Actin-related protein 99.4 3.9E-12 8.5E-17 121.2 15.5 206 25-248 29-238 (361)
216 PRK04922 tolB translocation pr 99.4 4.2E-11 9.2E-16 130.4 23.8 234 28-331 184-432 (433)
217 PRK03629 tolB translocation pr 99.4 1.9E-10 4.1E-15 124.7 27.5 175 73-311 180-365 (429)
218 KOG1272 WD40-repeat-containing 99.4 1.5E-12 3.2E-17 129.8 9.3 214 52-331 131-344 (545)
219 PRK05137 tolB translocation pr 99.4 1.3E-10 2.9E-15 126.7 25.2 224 41-332 192-433 (435)
220 KOG2394 WD40 protein DMR-N9 [G 99.3 1.7E-11 3.7E-16 124.5 15.3 181 60-289 183-384 (636)
221 KOG2139 WD40 repeat protein [G 99.3 5.8E-11 1.3E-15 115.0 18.1 197 50-299 98-300 (445)
222 PRK03629 tolB translocation pr 99.3 1.8E-10 3.9E-15 124.8 24.0 222 44-332 192-428 (429)
223 PRK02889 tolB translocation pr 99.3 2.1E-10 4.5E-15 124.5 23.2 227 42-332 187-425 (427)
224 KOG2111 Uncharacterized conser 99.3 2.6E-10 5.7E-15 109.0 20.6 180 72-311 75-258 (346)
225 KOG1524 WD40 repeat-containing 99.3 2.4E-11 5.2E-16 123.2 14.0 202 63-342 76-277 (737)
226 KOG3881 Uncharacterized conser 99.3 9.2E-11 2E-15 115.0 17.4 231 47-331 102-341 (412)
227 PRK04922 tolB translocation pr 99.3 3.3E-10 7.2E-15 123.4 23.4 176 72-311 184-370 (433)
228 PRK02889 tolB translocation pr 99.2 1E-09 2.2E-14 119.2 23.1 176 72-311 176-362 (427)
229 PF08662 eIF2A: Eukaryotic tra 99.2 3.8E-10 8.2E-15 107.5 16.9 151 97-310 9-180 (194)
230 KOG2139 WD40 repeat protein [G 99.2 3.6E-10 7.7E-15 109.7 16.1 201 93-341 98-300 (445)
231 KOG1334 WD40 repeat protein [G 99.2 2.3E-10 5E-15 115.1 14.9 287 22-339 158-454 (559)
232 PF08662 eIF2A: Eukaryotic tra 99.2 6E-10 1.3E-14 106.1 17.3 148 55-246 10-179 (194)
233 KOG2111 Uncharacterized conser 99.2 5.2E-09 1.1E-13 100.3 22.9 184 26-249 73-259 (346)
234 KOG1272 WD40-repeat-containing 99.2 4.8E-11 1E-15 119.2 7.2 219 51-336 171-394 (545)
235 TIGR02800 propeller_TolB tol-p 99.2 5.3E-09 1.1E-13 114.2 23.8 203 42-310 181-398 (417)
236 KOG0974 WD-repeat protein WDR6 99.1 1.6E-09 3.4E-14 119.2 18.6 76 620-702 215-291 (967)
237 KOG2321 WD40 repeat protein [G 99.1 8.4E-10 1.8E-14 113.3 15.2 195 61-310 145-344 (703)
238 PF02239 Cytochrom_D1: Cytochr 99.1 8E-09 1.7E-13 108.6 23.3 187 25-252 13-208 (369)
239 KOG0309 Conserved WD40 repeat- 99.1 3.7E-10 8E-15 118.9 12.0 208 50-311 24-234 (1081)
240 KOG0974 WD-repeat protein WDR6 99.1 2.4E-09 5.2E-14 117.8 17.9 196 56-312 93-291 (967)
241 KOG2315 Predicted translation 99.1 2.6E-08 5.6E-13 102.7 24.2 220 51-333 35-282 (566)
242 PRK05137 tolB translocation pr 99.1 1.1E-08 2.3E-13 111.8 23.2 203 72-340 182-395 (435)
243 KOG1354 Serine/threonine prote 99.1 7.3E-09 1.6E-13 100.1 18.9 197 92-310 24-245 (433)
244 KOG4497 Uncharacterized conser 99.1 2.4E-09 5.2E-14 102.7 14.5 268 51-340 49-380 (447)
245 PRK04792 tolB translocation pr 99.1 1.4E-08 3.1E-13 110.5 22.8 221 45-331 212-446 (448)
246 PRK00178 tolB translocation pr 99.1 1.8E-08 3.9E-13 110.2 23.8 224 43-332 191-428 (430)
247 KOG0280 Uncharacterized conser 99.1 1.5E-08 3.2E-13 96.1 18.4 187 49-291 68-265 (339)
248 KOG0280 Uncharacterized conser 99.0 9E-09 1.9E-13 97.6 14.8 161 53-248 124-286 (339)
249 PF10282 Lactonase: Lactonase, 99.0 7.1E-07 1.5E-11 94.1 30.8 231 38-310 25-276 (345)
250 PRK04792 tolB translocation pr 99.0 1.1E-07 2.3E-12 103.8 25.2 174 73-310 199-383 (448)
251 PF10282 Lactonase: Lactonase, 99.0 1.4E-06 3E-11 91.9 32.8 208 65-310 2-223 (345)
252 KOG1409 Uncharacterized conser 99.0 1.8E-08 4E-13 97.5 16.5 195 24-249 42-273 (404)
253 COG5354 Uncharacterized protei 99.0 2.8E-07 6.2E-12 94.0 25.6 223 49-335 31-288 (561)
254 PRK00178 tolB translocation pr 99.0 2.3E-07 5.1E-12 101.4 26.5 175 73-311 180-365 (430)
255 COG5170 CDC55 Serine/threonine 99.0 1.3E-08 2.9E-13 96.9 14.1 239 49-316 25-316 (460)
256 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.4E-14 109.0 9.5 213 43-310 728-949 (1034)
257 PF00400 WD40: WD domain, G-be 98.9 2E-09 4.4E-14 72.9 6.1 39 659-697 1-39 (39)
258 PRK01029 tolB translocation pr 98.9 2.4E-07 5.1E-12 100.2 25.1 229 45-332 179-425 (428)
259 KOG1064 RAVE (regulator of V-A 98.9 4.3E-09 9.4E-14 121.1 11.6 192 48-311 2206-2400(2439)
260 TIGR02800 propeller_TolB tol-p 98.9 1.3E-07 2.8E-12 103.3 22.9 201 72-338 170-381 (417)
261 KOG0309 Conserved WD40 repeat- 98.9 8.3E-09 1.8E-13 108.9 11.9 163 52-249 69-235 (1081)
262 KOG4547 WD40 repeat-containing 98.9 6.8E-08 1.5E-12 100.5 17.4 194 59-310 2-221 (541)
263 KOG1912 WD40 repeat protein [G 98.9 8.9E-07 1.9E-11 94.6 25.2 233 37-310 42-305 (1062)
264 KOG4547 WD40 repeat-containing 98.9 5.5E-08 1.2E-12 101.1 16.1 64 635-700 152-221 (541)
265 PLN02919 haloacid dehalogenase 98.9 1.3E-06 2.9E-11 104.1 29.8 68 635-703 811-892 (1057)
266 PLN02919 haloacid dehalogenase 98.9 2.7E-06 5.8E-11 101.5 31.9 232 54-311 571-835 (1057)
267 KOG4532 WD40-like repeat conta 98.8 7.4E-07 1.6E-11 83.6 20.5 212 55-319 72-292 (344)
268 KOG2314 Translation initiation 98.8 2.3E-06 5E-11 88.3 24.1 110 53-180 213-336 (698)
269 PRK01029 tolB translocation pr 98.7 5E-06 1.1E-10 90.0 25.0 70 635-705 334-409 (428)
270 PF00400 WD40: WD domain, G-be 98.7 4.1E-08 8.9E-13 66.4 5.5 38 41-78 2-39 (39)
271 KOG0882 Cyclophilin-related pe 98.7 2.5E-07 5.4E-12 92.8 12.8 278 24-326 26-321 (558)
272 KOG3914 WD repeat protein WDR4 98.7 8.3E-07 1.8E-11 88.3 16.0 162 52-255 64-232 (390)
273 PF15492 Nbas_N: Neuroblastoma 98.6 2.1E-05 4.4E-10 75.6 24.4 230 56-311 3-261 (282)
274 KOG1064 RAVE (regulator of V-A 98.6 8.4E-08 1.8E-12 110.9 9.7 153 51-255 2252-2407(2439)
275 KOG1832 HIV-1 Vpr-binding prot 98.6 3.2E-08 7E-13 106.5 6.0 213 29-312 1080-1294(1516)
276 KOG4714 Nucleoporin [Nuclear s 98.6 3.3E-07 7.1E-12 85.6 11.7 170 41-247 80-255 (319)
277 KOG2315 Predicted translation 98.6 6.1E-06 1.3E-10 85.6 21.7 196 49-311 164-392 (566)
278 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00014 3.1E-09 74.9 30.5 72 635-707 255-338 (352)
279 KOG2041 WD40 repeat protein [G 98.6 6E-06 1.3E-10 87.5 20.6 159 50-247 14-187 (1189)
280 TIGR03300 assembly_YfgL outer 98.6 5.9E-05 1.3E-09 81.0 29.2 195 61-312 64-262 (377)
281 TIGR02658 TTQ_MADH_Hv methylam 98.6 2.5E-05 5.5E-10 80.4 24.7 246 28-317 27-338 (352)
282 COG2706 3-carboxymuconate cycl 98.6 0.0001 2.2E-09 73.0 27.0 252 48-345 37-314 (346)
283 COG2706 3-carboxymuconate cycl 98.5 0.00015 3.2E-09 71.9 27.8 201 71-311 15-223 (346)
284 TIGR03300 assembly_YfgL outer 98.5 4E-05 8.6E-10 82.3 26.7 191 61-312 104-300 (377)
285 COG5170 CDC55 Serine/threonine 98.5 1.6E-06 3.5E-11 82.9 13.2 195 92-310 25-253 (460)
286 KOG4714 Nucleoporin [Nuclear s 98.5 8.4E-07 1.8E-11 83.0 10.8 165 61-244 143-316 (319)
287 PF15492 Nbas_N: Neuroblastoma 98.5 3.1E-05 6.8E-10 74.3 20.8 196 52-257 45-270 (282)
288 KOG4532 WD40-like repeat conta 98.5 1.3E-05 2.8E-10 75.5 17.5 199 64-310 130-332 (344)
289 KOG2695 WD40 repeat protein [G 98.5 5.4E-07 1.2E-11 87.5 8.7 157 66-256 228-386 (425)
290 KOG4190 Uncharacterized conser 98.4 6.5E-07 1.4E-11 91.8 9.1 182 85-312 728-909 (1034)
291 PRK04043 tolB translocation pr 98.4 9.9E-05 2.1E-09 79.4 26.3 193 52-311 189-402 (419)
292 COG4946 Uncharacterized protei 98.4 4.1E-05 8.9E-10 77.7 20.1 120 48-182 357-481 (668)
293 KOG1275 PAB-dependent poly(A) 98.3 1.4E-05 3.1E-10 87.4 15.9 186 61-307 146-340 (1118)
294 KOG3914 WD repeat protein WDR4 98.3 3.1E-06 6.7E-11 84.3 9.7 99 69-183 129-228 (390)
295 KOG1912 WD40 repeat protein [G 98.3 6.5E-05 1.4E-09 80.8 18.7 246 50-339 15-290 (1062)
296 KOG1645 RING-finger-containing 98.2 5.3E-05 1.1E-09 75.6 16.6 86 41-129 184-270 (463)
297 COG4946 Uncharacterized protei 98.2 0.00013 2.7E-09 74.3 19.0 149 58-250 327-481 (668)
298 KOG2695 WD40 repeat protein [G 98.2 4E-06 8.6E-11 81.7 7.6 162 99-312 217-379 (425)
299 COG5354 Uncharacterized protei 98.2 0.00025 5.5E-09 73.0 20.6 246 51-338 72-376 (561)
300 KOG2066 Vacuolar assembly/sort 98.2 3.4E-05 7.4E-10 83.6 15.0 191 50-309 39-233 (846)
301 KOG2314 Translation initiation 98.2 0.00021 4.6E-09 74.2 19.9 254 52-339 251-555 (698)
302 KOG0882 Cyclophilin-related pe 98.2 2.9E-05 6.2E-10 78.4 13.1 220 49-313 8-235 (558)
303 PF04762 IKI3: IKI3 family; I 98.1 0.00012 2.5E-09 86.1 19.6 219 49-311 208-458 (928)
304 KOG1275 PAB-dependent poly(A) 98.1 4.9E-05 1.1E-09 83.3 14.5 200 5-246 130-342 (1118)
305 PF08450 SGL: SMP-30/Gluconola 98.1 0.00093 2E-08 66.9 22.3 189 53-298 42-244 (246)
306 PF08450 SGL: SMP-30/Gluconola 98.1 0.0014 3.1E-08 65.5 23.5 217 55-330 4-233 (246)
307 PRK04043 tolB translocation pr 98.0 0.00061 1.3E-08 73.4 21.5 202 72-341 169-387 (419)
308 KOG2066 Vacuolar assembly/sort 98.0 0.00036 7.8E-09 76.0 18.6 166 45-247 53-234 (846)
309 KOG2041 WD40 repeat protein [G 98.0 6.1E-05 1.3E-09 80.2 12.1 170 92-310 13-187 (1189)
310 KOG1008 Uncharacterized conser 98.0 7E-06 1.5E-10 86.4 4.4 167 47-247 99-276 (783)
311 PF04762 IKI3: IKI3 family; I 97.9 0.0025 5.3E-08 75.2 25.8 264 27-311 236-521 (928)
312 smart00320 WD40 WD40 repeats. 97.9 3E-05 6.5E-10 51.4 5.8 39 659-697 2-40 (40)
313 PF07433 DUF1513: Protein of u 97.9 0.0045 9.7E-08 61.7 22.5 217 53-312 7-250 (305)
314 PF06977 SdiA-regulated: SdiA- 97.9 0.0015 3.2E-08 64.2 18.5 228 43-306 14-247 (248)
315 PF11768 DUF3312: Protein of u 97.8 0.0017 3.7E-08 68.9 18.8 129 38-182 194-333 (545)
316 KOG1008 Uncharacterized conser 97.8 1.5E-05 3.3E-10 83.9 3.4 211 49-310 55-276 (783)
317 PRK11138 outer membrane biogen 97.8 0.069 1.5E-06 57.6 31.7 202 61-313 68-278 (394)
318 KOG2114 Vacuolar assembly/sort 97.7 0.0037 8.1E-08 68.9 20.3 216 52-322 27-255 (933)
319 PF07433 DUF1513: Protein of u 97.7 0.0042 9.2E-08 61.9 18.7 164 56-252 56-253 (305)
320 PF11768 DUF3312: Protein of u 97.6 0.00022 4.8E-09 75.5 9.6 74 48-126 257-330 (545)
321 PF13360 PQQ_2: PQQ-like domai 97.6 0.035 7.6E-07 55.1 25.0 146 70-254 1-148 (238)
322 PF13360 PQQ_2: PQQ-like domai 97.5 0.0055 1.2E-07 60.9 18.0 195 61-313 35-234 (238)
323 smart00320 WD40 WD40 repeats. 97.5 0.00024 5.3E-09 46.8 4.8 38 41-78 3-40 (40)
324 KOG1920 IkappaB kinase complex 97.5 0.023 5.1E-07 65.3 22.6 212 51-312 69-325 (1265)
325 KOG3617 WD40 and TPR repeat-co 97.4 0.0062 1.3E-07 66.8 16.3 110 54-179 19-132 (1416)
326 KOG3621 WD40 repeat-containing 97.3 0.0069 1.5E-07 65.5 15.8 123 49-179 32-155 (726)
327 KOG1832 HIV-1 Vpr-binding prot 97.3 0.0003 6.5E-09 76.9 5.5 186 85-336 1094-1281(1516)
328 KOG1645 RING-finger-containing 97.3 0.003 6.6E-08 63.5 12.0 97 74-183 175-271 (463)
329 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.022 4.7E-07 47.4 13.9 101 53-173 2-109 (111)
330 KOG3617 WD40 and TPR repeat-co 97.0 0.012 2.5E-07 64.8 13.5 71 53-126 62-132 (1416)
331 COG3204 Uncharacterized protei 97.0 0.21 4.6E-06 49.0 20.5 182 46-247 81-264 (316)
332 KOG2114 Vacuolar assembly/sort 96.9 0.045 9.7E-07 60.8 17.0 185 101-332 31-225 (933)
333 PF08553 VID27: VID27 cytoplas 96.8 0.094 2E-06 59.8 19.2 212 63-310 494-725 (794)
334 PF08596 Lgl_C: Lethal giant l 96.7 0.079 1.7E-06 56.3 17.4 225 35-308 71-334 (395)
335 KOG1920 IkappaB kinase complex 96.7 0.25 5.3E-06 57.4 21.4 209 93-339 68-307 (1265)
336 KOG4640 Anaphase-promoting com 96.7 0.0089 1.9E-07 63.9 9.5 93 51-157 21-115 (665)
337 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.12 2.5E-06 43.2 14.0 103 96-241 2-109 (111)
338 PRK02888 nitrous-oxide reducta 96.6 0.06 1.3E-06 59.1 15.1 165 58-247 200-405 (635)
339 PF04841 Vps16_N: Vps16, N-ter 96.5 1.3 2.7E-05 47.9 24.7 65 56-125 34-109 (410)
340 PF14583 Pectate_lyase22: Olig 96.4 0.51 1.1E-05 49.0 20.1 173 57-247 42-223 (386)
341 COG3391 Uncharacterized conser 96.4 0.89 1.9E-05 48.6 23.3 204 53-312 76-286 (381)
342 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.71 1.5E-05 44.3 19.2 61 62-126 63-124 (354)
343 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.13 2.8E-06 54.5 16.4 183 59-249 1-221 (353)
344 cd00216 PQQ_DH Dehydrogenases 96.3 2.6 5.6E-05 46.8 30.4 64 62-128 61-131 (488)
345 PRK11138 outer membrane biogen 96.2 0.23 5E-06 53.6 17.4 180 64-308 207-393 (394)
346 PF06433 Me-amine-dh_H: Methyl 96.1 0.96 2.1E-05 46.1 19.5 58 650-708 270-329 (342)
347 PF06977 SdiA-regulated: SdiA- 96.0 1.1 2.5E-05 44.1 19.8 183 90-310 18-202 (248)
348 KOG3621 WD40 repeat-containing 96.0 0.052 1.1E-06 59.0 11.1 122 148-310 34-155 (726)
349 COG0823 TolB Periplasmic compo 96.0 0.34 7.3E-06 52.1 17.5 124 45-180 187-316 (425)
350 PF03178 CPSF_A: CPSF A subuni 95.9 0.28 6.1E-06 51.2 16.2 186 72-310 2-203 (321)
351 PF08553 VID27: VID27 cytoplas 95.9 0.27 5.9E-06 56.2 16.7 199 32-247 506-725 (794)
352 PF02897 Peptidase_S9_N: Proly 95.9 1.7 3.7E-05 47.2 22.8 117 52-180 125-262 (414)
353 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 3.1 6.6E-05 44.4 24.2 87 618-708 302-407 (415)
354 KOG4640 Anaphase-promoting com 95.9 0.03 6.5E-07 60.0 8.3 76 94-183 21-97 (665)
355 PF03178 CPSF_A: CPSF A subuni 95.7 1.2 2.6E-05 46.4 19.9 155 53-246 29-202 (321)
356 PF12894 Apc4_WD40: Anaphase-p 95.7 0.035 7.6E-07 38.5 5.3 34 50-84 11-44 (47)
357 COG0823 TolB Periplasmic compo 95.6 0.56 1.2E-05 50.5 17.1 200 73-336 174-384 (425)
358 KOG0553 TPR repeat-containing 95.4 0.15 3.3E-06 50.2 10.4 107 359-475 77-183 (304)
359 KOG4234 TPR repeat-containing 95.3 0.14 3E-06 47.1 9.3 120 363-488 95-215 (271)
360 COG3391 Uncharacterized conser 95.3 5 0.00011 42.9 23.1 229 52-336 32-267 (381)
361 PF04053 Coatomer_WDAD: Coatom 95.1 0.8 1.7E-05 49.5 16.1 147 44-246 26-173 (443)
362 PF00930 DPPIV_N: Dipeptidyl p 95.1 2.9 6.3E-05 44.2 20.3 92 25-122 20-128 (353)
363 PHA02713 hypothetical protein; 95.0 1.3 2.8E-05 50.0 18.4 63 61-127 303-377 (557)
364 PF04053 Coatomer_WDAD: Coatom 95.0 0.41 8.9E-06 51.7 13.8 142 93-310 32-174 (443)
365 KOG4649 PQQ (pyrrolo-quinoline 95.0 1.8 3.9E-05 41.7 16.0 103 62-181 23-126 (354)
366 PF05096 Glu_cyclase_2: Glutam 94.9 4.3 9.4E-05 40.0 19.5 214 39-299 32-250 (264)
367 PF06433 Me-amine-dh_H: Methyl 94.9 2.2 4.7E-05 43.6 17.4 246 28-323 67-334 (342)
368 KOG2395 Protein involved in va 94.9 1.2 2.5E-05 47.4 15.7 149 108-310 347-501 (644)
369 KOG2444 WD40 repeat protein [G 94.8 0.085 1.8E-06 49.7 6.6 107 62-180 70-179 (238)
370 PRK02888 nitrous-oxide reducta 94.7 1.3 2.7E-05 49.2 16.3 100 72-179 296-405 (635)
371 PF12894 Apc4_WD40: Anaphase-p 94.6 0.11 2.4E-06 36.1 5.3 32 669-700 11-42 (47)
372 cd00216 PQQ_DH Dehydrogenases 94.3 11 0.00023 42.0 27.7 30 638-667 405-434 (488)
373 PF04841 Vps16_N: Vps16, N-ter 94.3 8.3 0.00018 41.6 21.7 35 216-251 217-251 (410)
374 KOG2395 Protein involved in va 94.2 3.5 7.6E-05 44.0 17.4 143 65-246 349-500 (644)
375 PF00780 CNH: CNH domain; Int 94.2 7 0.00015 39.6 21.1 160 60-250 5-169 (275)
376 KOG4441 Proteins containing BT 94.1 2.3 5E-05 47.9 17.5 108 60-181 283-407 (571)
377 KOG4441 Proteins containing BT 94.0 3.8 8.1E-05 46.3 18.9 137 28-181 301-455 (571)
378 COG3490 Uncharacterized protei 93.8 1.8 4E-05 42.3 13.4 61 57-122 120-186 (366)
379 PF08596 Lgl_C: Lethal giant l 93.8 0.54 1.2E-05 50.0 11.2 164 52-246 3-173 (395)
380 KOG2079 Vacuolar assembly/sort 93.8 0.15 3.2E-06 58.3 7.1 73 50-125 130-203 (1206)
381 KOG2444 WD40 repeat protein [G 93.7 0.12 2.6E-06 48.7 5.2 69 636-704 111-182 (238)
382 COG3386 Gluconolactonase [Carb 93.7 5.4 0.00012 40.9 17.7 193 53-299 68-275 (307)
383 PF12234 Rav1p_C: RAVE protein 93.6 1.9 4.1E-05 48.2 15.2 123 51-177 30-155 (631)
384 KOG2079 Vacuolar assembly/sort 93.4 0.2 4.3E-06 57.3 7.2 73 624-702 131-206 (1206)
385 COG3490 Uncharacterized protei 93.3 9 0.0002 37.8 18.0 229 54-312 71-313 (366)
386 PHA02713 hypothetical protein; 93.2 1.9 4.2E-05 48.6 14.9 147 61-249 351-536 (557)
387 KOG4499 Ca2+-binding protein R 93.0 8.8 0.00019 36.7 16.5 160 64-254 73-249 (310)
388 PRK13616 lipoprotein LpqB; Pro 92.7 9.6 0.00021 43.1 19.4 114 51-174 350-472 (591)
389 PF10168 Nup88: Nuclear pore c 92.4 26 0.00056 40.6 24.2 87 94-183 85-184 (717)
390 PF11635 Med16: Mediator compl 92.4 25 0.00054 41.4 22.9 235 65-304 65-345 (753)
391 PF10168 Nup88: Nuclear pore c 92.3 5.4 0.00012 46.0 16.9 101 214-316 83-186 (717)
392 PF07569 Hira: TUP1-like enhan 92.2 0.56 1.2E-05 45.5 7.8 65 634-699 17-95 (219)
393 PHA03098 kelch-like protein; P 92.1 9.2 0.0002 43.1 18.8 106 61-181 294-417 (534)
394 PF10313 DUF2415: Uncharacteri 91.8 0.52 1.1E-05 31.7 4.8 33 148-180 1-35 (43)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.5 27 0.00059 39.1 28.8 31 638-668 471-501 (527)
396 PF15390 DUF4613: Domain of un 91.5 2.3 5E-05 46.1 11.7 120 51-181 57-189 (671)
397 PF05694 SBP56: 56kDa selenium 91.0 14 0.0003 39.2 16.6 213 61-314 86-347 (461)
398 PF10313 DUF2415: Uncharacteri 90.9 1 2.2E-05 30.4 5.4 32 51-82 1-35 (43)
399 KOG3630 Nuclear pore complex, 90.7 3.3 7.2E-05 48.3 12.7 156 94-297 101-261 (1405)
400 PHA02790 Kelch-like protein; P 90.7 18 0.00039 40.1 18.7 105 61-180 271-386 (480)
401 KOG4499 Ca2+-binding protein R 89.7 7.6 0.00016 37.1 12.1 153 50-235 108-273 (310)
402 COG3204 Uncharacterized protei 88.8 27 0.00058 34.9 19.4 218 49-310 42-264 (316)
403 PHA03098 kelch-like protein; P 88.8 13 0.00029 41.8 16.3 65 61-128 342-417 (534)
404 KOG4460 Nuclear pore complex, 88.0 4.2 9.1E-05 43.3 10.2 100 215-316 103-205 (741)
405 PF14870 PSII_BNR: Photosynthe 87.9 34 0.00074 35.0 18.0 115 48-174 142-257 (302)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 87.8 6.5 0.00014 42.0 11.8 86 38-126 295-399 (415)
407 PRK13616 lipoprotein LpqB; Pro 87.8 16 0.00035 41.4 15.7 113 53-177 399-524 (591)
408 TIGR02604 Piru_Ver_Nterm putat 87.4 16 0.00035 38.8 15.0 73 94-178 14-99 (367)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.0 58 0.0012 36.6 22.8 60 648-708 440-499 (527)
410 PF05694 SBP56: 56kDa selenium 86.8 9.9 0.00022 40.2 12.1 130 54-183 184-347 (461)
411 PF05096 Glu_cyclase_2: Glutam 86.8 32 0.00069 34.1 15.0 142 62-234 100-249 (264)
412 PF15390 DUF4613: Domain of un 86.6 15 0.00032 40.2 13.4 158 50-246 19-186 (671)
413 PF10647 Gmad1: Lipoprotein Lp 86.3 30 0.00066 34.4 15.3 116 52-179 25-145 (253)
414 PRK10115 protease 2; Provision 86.3 73 0.0016 37.1 23.1 71 52-127 128-209 (686)
415 PF08728 CRT10: CRT10; InterP 86.3 51 0.0011 37.8 18.1 160 62-246 49-246 (717)
416 KOG1897 Damage-specific DNA bi 86.3 76 0.0016 37.2 27.3 78 635-715 782-872 (1096)
417 TIGR03118 PEPCTERM_chp_1 conse 86.0 41 0.00089 33.9 22.4 124 52-180 24-172 (336)
418 PF00780 CNH: CNH domain; Int 85.9 41 0.00089 33.8 17.3 161 107-312 7-168 (275)
419 KOG3630 Nuclear pore complex, 85.1 5 0.00011 46.9 9.7 116 51-178 101-228 (1405)
420 COG3386 Gluconolactonase [Carb 84.7 26 0.00057 35.9 14.1 123 51-181 111-245 (307)
421 KOG2247 WD40 repeat-containing 84.6 0.19 4.2E-06 52.5 -1.3 151 49-241 33-183 (615)
422 PF07569 Hira: TUP1-like enhan 84.4 5.9 0.00013 38.5 8.9 65 58-125 18-95 (219)
423 KOG4648 Uncharacterized conser 84.3 3 6.4E-05 42.0 6.7 111 364-484 98-208 (536)
424 PHA02790 Kelch-like protein; P 84.3 33 0.00072 38.0 16.0 104 61-181 318-426 (480)
425 PF10214 Rrn6: RNA polymerase 83.8 95 0.0021 36.7 20.2 91 214-313 144-236 (765)
426 KOG0543 FKBP-type peptidyl-pro 82.9 20 0.00043 37.5 12.1 123 365-491 210-341 (397)
427 TIGR02604 Piru_Ver_Nterm putat 82.9 29 0.00062 36.9 14.3 109 51-167 14-142 (367)
428 PF11715 Nup160: Nucleoporin N 82.9 3.1 6.7E-05 47.1 7.3 71 637-707 156-256 (547)
429 TIGR02276 beta_rpt_yvtn 40-res 82.7 5.7 0.00012 26.4 5.9 31 637-667 1-32 (42)
430 PF02897 Peptidase_S9_N: Proly 82.2 4.6 0.0001 43.8 8.1 67 635-703 131-214 (414)
431 KOG1916 Nuclear protein, conta 81.6 1.4 3E-05 49.9 3.6 118 46-177 128-264 (1283)
432 KOG1983 Tomosyn and related SN 81.2 24 0.00052 42.7 14.0 66 638-704 723-792 (993)
433 KOG1916 Nuclear protein, conta 81.2 0.52 1.1E-05 53.0 0.3 63 635-698 191-264 (1283)
434 PF08728 CRT10: CRT10; InterP 78.7 34 0.00074 39.1 13.2 117 52-177 102-245 (717)
435 KOG4460 Nuclear pore complex, 78.3 77 0.0017 34.3 14.6 34 218-251 168-203 (741)
436 PLN03088 SGT1, suppressor of 78.0 35 0.00075 36.1 12.8 113 366-488 5-117 (356)
437 KOG4642 Chaperone-dependent E3 78.0 13 0.00027 35.9 8.1 93 362-465 9-102 (284)
438 TIGR03074 PQQ_membr_DH membran 77.0 1.6E+02 0.0035 34.7 23.5 96 31-128 155-281 (764)
439 PF14761 HPS3_N: Hermansky-Pud 76.9 29 0.00064 33.0 10.3 112 63-180 29-165 (215)
440 KOG0547 Translocase of outer m 76.3 9.9 0.00021 40.5 7.6 91 363-464 115-206 (606)
441 PF14727 PHTB1_N: PTHB1 N-term 76.1 1.2E+02 0.0026 32.7 16.8 165 107-310 37-205 (418)
442 PF12657 TFIIIC_delta: Transcr 75.6 17 0.00037 33.7 8.6 32 671-702 87-124 (173)
443 KOG2377 Uncharacterized conser 75.4 16 0.00035 38.4 8.8 119 49-180 65-187 (657)
444 TIGR02276 beta_rpt_yvtn 40-res 74.8 14 0.0003 24.5 5.9 40 289-329 1-41 (42)
445 KOG0548 Molecular co-chaperone 72.5 26 0.00056 37.9 9.7 108 369-486 364-471 (539)
446 COG5167 VID27 Protein involved 72.4 87 0.0019 33.8 13.2 131 33-180 493-634 (776)
447 PF14583 Pectate_lyase22: Olig 70.9 1.5E+02 0.0032 31.4 22.6 114 55-180 85-224 (386)
448 TIGR03606 non_repeat_PQQ dehyd 70.8 1.7E+02 0.0036 32.0 15.8 55 638-693 368-429 (454)
449 smart00564 PQQ beta-propeller 69.8 9.9 0.00021 23.6 3.9 25 640-664 7-31 (33)
450 KOG2280 Vacuolar assembly/sort 69.5 2.1E+02 0.0046 32.7 16.9 50 72-126 64-113 (829)
451 KOG0376 Serine-threonine phosp 68.0 32 0.0007 36.8 9.2 120 367-496 8-127 (476)
452 PF14727 PHTB1_N: PTHB1 N-term 67.8 1.8E+02 0.004 31.3 19.2 157 61-248 36-206 (418)
453 PF12768 Rax2: Cortical protei 67.0 64 0.0014 32.6 10.9 95 73-181 17-126 (281)
454 PF08801 Nucleoporin_N: Nup133 66.3 69 0.0015 34.8 12.2 31 216-247 190-220 (422)
455 COG5276 Uncharacterized conser 64.4 1.6E+02 0.0035 29.6 20.2 159 93-312 86-244 (370)
456 KOG1900 Nuclear pore complex, 64.3 66 0.0014 39.0 11.6 185 49-247 77-273 (1311)
457 TIGR03074 PQQ_membr_DH membran 63.5 2.9E+02 0.0063 32.6 16.8 45 638-685 690-741 (764)
458 PF07995 GSDH: Glucose / Sorbo 63.0 83 0.0018 32.9 11.4 58 637-694 269-330 (331)
459 PF07676 PD40: WD40-like Beta 63.0 30 0.00064 22.5 5.4 34 663-696 2-38 (39)
460 PF12768 Rax2: Cortical protei 62.9 14 0.00029 37.4 5.3 60 643-702 9-75 (281)
461 TIGR03118 PEPCTERM_chp_1 conse 62.9 1.8E+02 0.0039 29.5 25.3 59 632-690 254-324 (336)
462 PF11715 Nup160: Nucleoporin N 61.4 16 0.00034 41.4 6.2 38 51-88 215-256 (547)
463 PF12234 Rav1p_C: RAVE protein 60.2 58 0.0013 36.9 10.0 63 636-698 38-103 (631)
464 PF12657 TFIIIC_delta: Transcr 60.0 66 0.0014 29.8 9.1 30 281-310 87-122 (173)
465 PF14781 BBS2_N: Ciliary BBSom 58.5 1.3E+02 0.0028 26.4 11.9 111 55-180 3-127 (136)
466 KOG1900 Nuclear pore complex, 57.8 2.4E+02 0.0052 34.6 14.6 34 277-310 240-273 (1311)
467 PF01011 PQQ: PQQ enzyme repea 57.6 32 0.0007 22.4 4.7 27 641-667 2-28 (38)
468 COG4257 Vgb Streptogramin lyas 55.9 2.2E+02 0.0048 28.4 16.4 193 51-310 62-263 (353)
469 KOG2377 Uncharacterized conser 54.6 2.5E+02 0.0054 30.1 12.5 114 54-179 26-141 (657)
470 PLN02153 epithiospecifier prot 54.5 2.7E+02 0.006 29.0 19.0 64 61-127 85-169 (341)
471 PF10647 Gmad1: Lipoprotein Lp 54.3 2.3E+02 0.0051 28.1 17.6 119 52-174 67-192 (253)
472 PRK13684 Ycf48-like protein; P 53.6 2.8E+02 0.0061 28.9 17.9 111 50-174 172-284 (334)
473 KOG0551 Hsp90 co-chaperone CNS 52.9 55 0.0012 33.4 7.3 88 367-460 85-172 (390)
474 COG5276 Uncharacterized conser 52.9 2.6E+02 0.0056 28.2 22.8 117 51-183 87-204 (370)
475 PF10214 Rrn6: RNA polymerase 52.8 4.6E+02 0.01 31.1 23.3 146 91-250 77-236 (765)
476 PF12341 DUF3639: Protein of u 52.1 38 0.00083 20.4 3.8 25 217-244 3-27 (27)
477 PF13449 Phytase-like: Esteras 51.8 2.5E+02 0.0054 29.2 12.7 131 147-299 19-166 (326)
478 PF14870 PSII_BNR: Photosynthe 51.1 2.9E+02 0.0063 28.3 19.8 161 90-306 141-301 (302)
479 KOG1897 Damage-specific DNA bi 50.2 5.1E+02 0.011 30.9 19.2 155 52-246 776-942 (1096)
480 PF07676 PD40: WD40-like Beta 49.3 63 0.0014 20.9 5.2 30 146-175 7-38 (39)
481 KOG2247 WD40 repeat-containing 49.2 5.2 0.00011 42.4 -0.2 148 93-302 34-181 (615)
482 KOG2280 Vacuolar assembly/sort 48.8 4.8E+02 0.01 30.1 17.2 54 115-181 62-115 (829)
483 TIGR03548 mutarot_permut cycli 48.2 3.3E+02 0.0072 28.1 17.6 107 61-181 72-197 (323)
484 PF14269 Arylsulfotran_2: Aryl 47.0 61 0.0013 33.2 7.1 72 621-699 144-220 (299)
485 KOG0918 Selenium-binding prote 46.1 3.8E+02 0.0083 28.3 13.7 113 71-183 228-347 (476)
486 PF01436 NHL: NHL repeat; Int 45.1 42 0.00092 20.1 3.4 25 53-77 4-28 (28)
487 COG5167 VID27 Protein involved 43.6 33 0.00072 36.8 4.5 59 638-698 572-631 (776)
488 PLN02193 nitrile-specifier pro 42.4 5.1E+02 0.011 28.6 17.5 65 61-127 175-254 (470)
489 PF14781 BBS2_N: Ciliary BBSom 42.4 2.4E+02 0.0052 24.8 11.9 78 98-181 3-84 (136)
490 PF01731 Arylesterase: Arylest 42.0 50 0.0011 26.5 4.3 29 282-310 56-85 (86)
491 PF13570 PQQ_3: PQQ-like domai 41.8 39 0.00084 22.2 3.2 21 638-658 20-40 (40)
492 COG3823 Glutamine cyclotransfe 41.7 3.2E+02 0.007 26.1 14.2 64 61-126 55-120 (262)
493 PF03022 MRJP: Major royal jel 41.6 4E+02 0.0086 27.1 15.8 77 52-128 2-99 (287)
494 PF01731 Arylesterase: Arylest 41.2 1E+02 0.0022 24.8 5.9 33 147-179 53-85 (86)
495 PLN00033 photosystem II stabil 41.0 4.9E+02 0.011 28.0 17.9 153 53-243 241-396 (398)
496 PLN00033 photosystem II stabil 40.7 4.9E+02 0.011 27.9 13.6 110 51-175 281-396 (398)
497 PF03088 Str_synth: Strictosid 40.0 80 0.0017 25.5 5.3 53 643-696 31-85 (89)
498 PF03088 Str_synth: Strictosid 39.7 1.8E+02 0.0039 23.5 7.2 39 71-113 36-74 (89)
499 KOG0548 Molecular co-chaperone 39.5 2.2E+02 0.0047 31.2 9.7 109 367-485 6-114 (539)
500 KOG3522 Predicted guanine nucl 38.9 2.6E+02 0.0056 32.5 10.5 149 64-249 549-700 (925)
No 1
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-75 Score=578.47 Aligned_cols=738 Identities=36% Similarity=0.501 Sum_probs=575.6
Q ss_pred CCCCCCCCCchhhhhhccccCCCcccccccc-cchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC
Q 004290 1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQ-MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY 79 (763)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~ 79 (763)
|.++-|+++++.++|..|....... .+++. ..+.+++++.+.++|+||+++|+||+|+.+|.+|+|||.|-.+.|||.
T Consensus 1 M~~vs~s~~~i~rql~~r~~~~~h~-~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~ 79 (758)
T KOG1310|consen 1 MSGVSLSDGNILRQLDYRDAFQLHI-SRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDP 79 (758)
T ss_pred CCceeccchhHhhhccccccchhhh-HHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecc
Confidence 7788899999988887776544432 23322 778899999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC
Q 004290 80 SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159 (763)
Q Consensus 80 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 159 (763)
...+.++.+..+|...|++++|.|..++.++++|+.|..|+++|+...++...+.+..++...+..|...|..|+..|.+
T Consensus 80 ~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~ 159 (758)
T KOG1310|consen 80 FEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG 159 (758)
T ss_pred hhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC
Confidence 99999999999999999999999998889999999999999999998777777777788889999999999999999988
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004290 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (763)
Q Consensus 160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~ 239 (763)
++.|+++++||+|+.+|+|....+......+..+... ........++.++|.++.+|++|+.|-.
T Consensus 160 PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny---------------~~~lielk~ltisp~rp~~laVGgsdpf 224 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY---------------NPQLIELKCLTISPSRPYYLAVGGSDPF 224 (758)
T ss_pred CceEEEecCCcceeeecccCCccCCccccccHHHHHh---------------chhhheeeeeeecCCCCceEEecCCCch
Confidence 8999999999999999999987664333222222111 1223567899999999999999999999
Q ss_pred EEEEeCCC-CCCCcccCC----CCCCCCccccccccccc-CCCCCc-c--ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 240 ARLYDRRM-LPPLTSCQK----RMSPPPCVNYFCPMHLS-EHGRSS-L--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 240 i~iwd~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~g~~~-~--~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.++||.|. .+....-.. +..+..|+++|+|.|+. ..|... . .++.++|+|+|..|++......|++||++.
T Consensus 225 arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 225 ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 99999554 333322222 12233589999999993 333111 1 267889999999999999999999999999
Q ss_pred CCccceEeec------CCCCeeeeec-c--CCCCcccCCCC-CcccccccccccccccCchhhhHHHHHHHhhhhcCCCh
Q 004290 311 AGGRAMRYTV------GDASKIMSFT-P--TLNGLELQPPI-HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHP 380 (763)
Q Consensus 311 ~~~~~~~~~~------~~~~~~~~~~-p--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (763)
++.+...+.. +.....+.|. | ..+.+.+.... ....+......+......++...+.+...+.+.+|...
T Consensus 305 ~~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrsp~~a~~~~~~eL~e~ie~~~~egnd~ 384 (758)
T KOG1310|consen 305 DKSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRSPYTAAQPRFYELPENIEKFKTEGNDG 384 (758)
T ss_pred CCCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccCcccccccchhhchHHHHHHHhhccch
Confidence 7655444333 1111222222 1 01111111111 01111111122233445555666777777777666654
Q ss_pred hhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHH
Q 004290 381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEA 460 (763)
Q Consensus 381 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (763)
...+...+.+..-....+.-+....++.+|++++++|.|.+|.|+|++||+.++.++|...++|+++.+++..|.+++++
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 44443333333222222233445679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCC
Q 004290 461 LDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540 (763)
Q Consensus 461 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~ 540 (763)
.++...++..||...-....+..+..++..+...+...... ...+|.++.+.+++.....+.+.+.......+
T Consensus 465 l~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e~~~-------~~~ri~t~~~~~~r~~~~~~~~~~~~~l~s~d 537 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSEMIR-------AFARIDTDLSSVRRFFWIHKVLRGCLLLISSD 537 (758)
T ss_pred hhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchhhhh-------hhheeccchhhhhhhhhhhhhhhhhhhhhccc
Confidence 99999999999966555667777777887776554443322 34567777777788888888888888899999
Q ss_pred CCchhhhhccccCCCCCCCCcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEe
Q 004290 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYV 620 (763)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (763)
+..+.|.|.+...+..+.+.+..+++.-.|+|.++++..+++...+..-..+...-.++..+|...|......++.++|.
T Consensus 538 ~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~ssl~nDe~dyq~E~sydy~~rYv 617 (758)
T KOG1310|consen 538 IYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSSLNNDEDDYQDEESYDYASRYV 617 (758)
T ss_pred ccccccCCCCCCceeccccccccccccccccccCccccccccccccccccccccccccccccchhhcccchhhhHHhhhc
Confidence 99999999999999999999999899999999999988777643333333334444555677888888899999999999
Q ss_pred eecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCC
Q 004290 621 GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 621 gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~ 700 (763)
||||..++|+.++|++..|.|+++||+||+.+||+..+|.++.++.|..+.|+|++-||..++|||+|+|.+||||++..
T Consensus 618 GHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a 697 (758)
T KOG1310|consen 618 GHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEA 697 (758)
T ss_pred cccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCCCCChhhHHHHHHHHHHHhhcccccCCcHHHHHHhhhhccccCCCCCCCccCC
Q 004290 701 SVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 763 (763)
Q Consensus 701 ~~~~~~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (763)
-++..... -.+|-...+.+.++.|+++..+.+..++.-+.+-++++| |..|.+++++|+|+
T Consensus 698 ~p~~~as~-~h~pns~~iv~~~e~n~Q~~sR~~~~~l~~~~~~~fr~~-~~~g~~h~~~~t~~ 758 (758)
T KOG1310|consen 698 TPPSGASR-NHRPNSYAIVATNEMNRQQGSRDSYITLRMLSHLAFRAH-LDDGFGHEVLDTDA 758 (758)
T ss_pred CCCccccc-ccCCchhhhhhhhhhhhhhhccCCcchHHHHHHHHHHHh-hcccCCcccccCCC
Confidence 66655433 344555566777888887777655555666677777777 99999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-49 Score=380.29 Aligned_cols=332 Identities=20% Similarity=0.313 Sum_probs=280.6
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
+-..+.||.++|.|++|+|+|..||||+.|.++|+||+.+...+.+. .+|...|.|++|+|+ |..|++|+.||+|++
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIRL 183 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEEE
Confidence 33457899999999999999999999999999999999999999999 899999999999999 899999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC----CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
||..+++ .....+.+|...|++++|.|- ...+|++++.||.|+|||+..++
T Consensus 184 wdpktg~---------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---------------- 238 (480)
T KOG0271|consen 184 WDPKTGQ---------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---------------- 238 (480)
T ss_pred ecCCCCC---------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce----------------
Confidence 9998754 336788999999999999873 34689999999999999998765
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
.+....+|+.+|+|+.|.-+ .+|++|+.|++|++|+...+.....+ .||
T Consensus 239 ---------~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~l--------------------kGH 287 (480)
T KOG0271|consen 239 ---------CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCREL--------------------KGH 287 (480)
T ss_pred ---------EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhh--------------------ccc
Confidence 23334578999999999875 49999999999999999987655443 445
Q ss_pred CccceeEEEEc-----------CCCC-------------------------EEEEEeCCCeEEEEECCCCC-ccceEeec
Q 004290 278 SSLHLTHVTFS-----------PNGE-------------------------EVLLSYSGEHVYLMDVNHAG-GRAMRYTV 320 (763)
Q Consensus 278 ~~~~i~~v~~s-----------pdg~-------------------------~l~~~s~d~~i~iwd~~~~~-~~~~~~~~ 320 (763)
.. +|+.++.+ |.++ .|++|+.|.++++|+....+ ......+|
T Consensus 288 ah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 288 AH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred ch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence 44 57777655 3333 49999999999999987755 44567778
Q ss_pred CCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCC
Q 004290 321 GDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP 400 (763)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 400 (763)
...++.+.|+|+..-++..+
T Consensus 367 q~lVn~V~fSPd~r~IASaS------------------------------------------------------------ 386 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASAS------------------------------------------------------------ 386 (480)
T ss_pred hhheeeEEECCCccEEEEee------------------------------------------------------------
Confidence 88888899999744322111
Q ss_pred ccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHH
Q 004290 401 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480 (763)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~ 480 (763)
T Consensus 387 -------------------------------------------------------------------------------- 386 (480)
T KOG0271|consen 387 -------------------------------------------------------------------------------- 386 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCC
Q 004290 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG 560 (763)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (763)
T Consensus 387 -------------------------------------------------------------------------------- 386 (480)
T KOG0271|consen 387 -------------------------------------------------------------------------------- 386 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCC
Q 004290 561 RDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGD 640 (763)
Q Consensus 561 ~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~ 640 (763)
....+++|...+++++..|.||...++.++ +|.|.+
T Consensus 387 ----------------------------------------FDkSVkLW~g~tGk~lasfRGHv~~VYqva----wsaDsR 422 (480)
T KOG0271|consen 387 ----------------------------------------FDKSVKLWDGRTGKFLASFRGHVAAVYQVA----WSADSR 422 (480)
T ss_pred ----------------------------------------cccceeeeeCCCcchhhhhhhccceeEEEE----eccCcc
Confidence 111233455556778889999999999998 999999
Q ss_pred EEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290 641 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (763)
Q Consensus 641 ~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~ 697 (763)
+|+|||.|.+++|||+.+.++..-|.||.+.|.+|.|+|||..++|||.|..+|+|.
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.4e-46 Score=359.90 Aligned_cols=205 Identities=25% Similarity=0.332 Sum_probs=184.8
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
-|-+.+|..+.|+.|++.|||||.+|.++||+..+...+.++ .+|...|.++.|+|..++..++||+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 467889999999999999999999999999999999889999 8999999999999983367999999999999999996
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
. .++..+.+|...|..++|+| +|++|+|++.|.+-++||++++...
T Consensus 251 e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El----------------------- 296 (459)
T KOG0272|consen 251 E----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL----------------------- 296 (459)
T ss_pred C----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-----------------------
Confidence 2 56899999999999999999 7799999999999999999998632
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
....+|...|.+|+|+|+ |.++++|+.|..-||||+|++..+..+ .||.. .|.+|.
T Consensus 297 --L~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L--------------------~gH~k-~I~~V~ 352 (459)
T KOG0272|consen 297 --LLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFL--------------------AGHIK-EILSVA 352 (459)
T ss_pred --HhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEe--------------------ccccc-ceeeEe
Confidence 233578899999999998 789999999999999999999655433 45655 599999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC
Q 004290 287 FSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 287 ~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|+|+|..|++|+.|++++|||++.
T Consensus 353 fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 353 FSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred ECCCceEEeecCCCCcEEEeeecc
Confidence 999999999999999999999987
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-45 Score=347.30 Aligned_cols=345 Identities=19% Similarity=0.230 Sum_probs=262.1
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004290 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 162 (763)
++...+ .||.++|.|+.|+|+ +..|++|+.|.++|+||+.+. .+..+.++|...|.|++|+| ++..
T Consensus 106 rCssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsP-Dgk~ 171 (480)
T KOG0271|consen 106 RCSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSP-DGKK 171 (480)
T ss_pred eecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECC-Ccch
Confidence 344556 799999999999998 899999999999999999983 56899999999999999999 7799
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC----CCcEEEEEeCCC
Q 004290 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----RPHLLLVGGSDA 238 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~----~~~~l~sgs~Dg 238 (763)
|++|+.||+|++||..++++. ...+++|...|++++|.|- ...+||+++.||
T Consensus 172 iASG~~dg~I~lwdpktg~~~------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQI------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred hhccccCCeEEEecCCCCCcc------------------------cccccCcccceeEEeecccccCCCccceecccCCC
Confidence 999999999999999998754 2334578899999999874 246899999999
Q ss_pred cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEe
Q 004290 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (763)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~ 318 (763)
.|+|||+..++.+..+ .||.. +|+||+|--+| +|++++.|++|++|+...+.......
T Consensus 228 ~vrIWd~~~~~~~~~l--------------------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTL--------------------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred CEEEEEccCceEEEEe--------------------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc
Confidence 9999999876544322 66777 69999998776 69999999999999999987777777
Q ss_pred ecCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCC
Q 004290 319 TVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI 398 (763)
Q Consensus 319 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 398 (763)
+|.+-++.++.+-+.- .-...|-+.+..++ ...+... .|++-|+.++
T Consensus 286 GHahwvN~lalsTdy~-----LRtgaf~~t~~~~~-----~~se~~~----------------~Al~rY~~~~------- 332 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYV-----LRTGAFDHTGRKPK-----SFSEEQK----------------KALERYEAVL------- 332 (480)
T ss_pred ccchheeeeeccchhh-----hhccccccccccCC-----ChHHHHH----------------HHHHHHHHhh-------
Confidence 8888777777664311 00111111111100 0000000 0000000000
Q ss_pred CCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhH
Q 004290 399 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (763)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~ 478 (763)
T Consensus 333 -------------------------------------------------------------------------------- 332 (480)
T KOG0271|consen 333 -------------------------------------------------------------------------------- 332 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCC
Q 004290 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGD 558 (763)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (763)
..+
T Consensus 333 -------------------~~~---------------------------------------------------------- 335 (480)
T KOG0271|consen 333 -------------------KDS---------------------------------------------------------- 335 (480)
T ss_pred -------------------ccC----------------------------------------------------------
Confidence 000
Q ss_pred CCcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCC-CCCCCCCCc-ccccccceEEeeecccccceeeeeccc
Q 004290 559 EGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS-QNDRIPYQP-ETVIDMKQRYVGHCNVGTDIKQASFLG 636 (763)
Q Consensus 559 ~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~gh~~~~~~i~~~~~~s 636 (763)
+...+++ ......+|. ....+++.++.||...+..+. ||
T Consensus 336 -----------------------------------~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fS 376 (480)
T KOG0271|consen 336 -----------------------------------GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FS 376 (480)
T ss_pred -----------------------------------cceeEEecCCceEEEecccccccchhhhhchhhheeeEE----EC
Confidence 0000111 111122222 234447788999999998887 99
Q ss_pred CCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCChh
Q 004290 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 716 (763)
Q Consensus 637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~~ 716 (763)
||++||||+|.|.+|++||..+|+.+.+|+||-+.|-.|+||.|.++|+|||.|.++|||++++.+....+.||...+.+
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988753
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-40 Score=308.98 Aligned_cols=216 Identities=23% Similarity=0.335 Sum_probs=188.6
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
+..++|+||...|.++.|++|.++|+|+|.||.+.|||.-+...++.+ .-....|..++|+|. ++++++|+.|+...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNKCS 122 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCceeE
Confidence 445899999999999999999999999999999999999998888888 667889999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
||++.+.+... .....+.+.+|.+.+.|..|-+ + ..|+|++.|.++.+||+++++.
T Consensus 123 iy~ls~~d~~g----~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~------------------ 178 (343)
T KOG0286|consen 123 IYPLSTRDAEG----NVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQ------------------ 178 (343)
T ss_pred EEecccccccc----cceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceE------------------
Confidence 99999652221 1234567899999999999987 4 4667999999999999999873
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
+..+.+|.+.|.++++.|.+++.|++|+-|+..++||+|.+.. ++.| .||..
T Consensus 179 -------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-------------~qtF-------~ghes- 230 (343)
T KOG0286|consen 179 -------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-------------VQTF-------EGHES- 230 (343)
T ss_pred -------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce-------------eEee-------ccccc-
Confidence 3344589999999999996699999999999999999998754 4444 67777
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|++|+|.|+|.-+++|+.|++.++||++..
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 5999999999999999999999999999984
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=300.69 Aligned_cols=189 Identities=18% Similarity=0.307 Sum_probs=158.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
.-+|||++.|.+||+|...+|.+.+++ +...+.|+.+...|+ +..|++++ .-.||+||+++.+. .|+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np--------~Pv~ 77 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNP--------NPVA 77 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCC--------Ccee
Confidence 358999999999999999999999999 667789999999999 67888777 46899999997542 4799
Q ss_pred eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
++.+|...|+.+.|.. ++++++|||+||+++|||+|..... +. -.+..+|+++
T Consensus 78 t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~q-----------R~---------------~~~~spVn~v 130 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQ-----------RN---------------YQHNSPVNTV 130 (311)
T ss_pred EEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccc-----------hh---------------ccCCCCcceE
Confidence 9999999999999998 7799999999999999999985421 11 1245789999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~ 301 (763)
..+|. ...|++|..+|.|++||+........ ..| .....|.++...|||.+|+++...|
T Consensus 131 vlhpn-QteLis~dqsg~irvWDl~~~~c~~~-------------liP-------e~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 131 VLHPN-QTELISGDQSGNIRVWDLGENSCTHE-------------LIP-------EDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred EecCC-cceEEeecCCCcEEEEEccCCccccc-------------cCC-------CCCcceeeEEEcCCCcEEEEecCCc
Confidence 99997 46899999999999999997532221 111 1112599999999999999999999
Q ss_pred eEEEEECCC
Q 004290 302 HVYLMDVNH 310 (763)
Q Consensus 302 ~i~iwd~~~ 310 (763)
..++|++-+
T Consensus 190 ~cyvW~l~~ 198 (311)
T KOG0315|consen 190 NCYVWRLLN 198 (311)
T ss_pred cEEEEEccC
Confidence 999999877
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.3e-40 Score=338.54 Aligned_cols=401 Identities=21% Similarity=0.224 Sum_probs=293.5
Q ss_pred cccccchhhhhccccceeecc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC
Q 004290 28 HSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 106 (763)
.-+++|+ +.+.++++.++. |+++|..++|+|.|.+|++|+.|+.|+|||+..+.+.+.| .||.+.|.++.|+|+.+
T Consensus 84 ~llrv~~--L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 84 QLLRVWS--LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWN 160 (775)
T ss_pred ceEEEEE--cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccc
Confidence 3455555 666789999998 9999999999999999999999999999999999999999 89999999999999875
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC--
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP-- 184 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~-- 184 (763)
..+|++|..|++|++||++... .++..+..|...|++++|.+ ++..++++|.|..+.+||+.+.+...
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred hhheeecCCCceEEEEEcccCc---------hHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhhee
Confidence 6789999999999999999632 24788899999999999999 46778899999999999996644320
Q ss_pred -------------C---------------------------------CCCCC------------------cccceEEEec
Q 004290 185 -------------P---------------------------------AGSSH------------------QECRNILLDL 200 (763)
Q Consensus 185 -------------~---------------------------------~~~~~------------------~~~~~~~~~~ 200 (763)
. ....+ .+....+++.
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 0 00000 0111111111
Q ss_pred CCC---------------------------------cee-------eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290 201 RCG---------------------------------AKR-------SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 201 ~~~---------------------------------~~~-------~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
.+. ..+ .....++|...|.+++...+ |.+|++|+.|+++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~-g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS-GDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc-CcEEEEecCCceE
Confidence 000 000 00012678888889884443 5799999999999
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCCccceEee
Q 004290 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 319 (763)
++|.+.+..... .|+.. ..||.+ .|.+|+++..+ .+|+++|.|+++++|++...+.......
T Consensus 390 ilWr~~~~~~~~---------~~~a~-------~~gH~~-svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 390 ILWRLNNNCSKS---------LCVAQ-------ANGHTN-SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred EEEEecCCcchh---------hhhhh-------hccccc-ccceeeecccCccEEEEecCCceEEEecCCCcccccccce
Confidence 999885432111 11111 156777 59999998765 6788999999999999987331100000
Q ss_pred cCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCC
Q 004290 320 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG 399 (763)
Q Consensus 320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 399 (763)
| .+.....
T Consensus 453 ---------~--------------------------------------------------------~~~~t~~------- 460 (775)
T KOG0319|consen 453 ---------L--------------------------------------------------------TCRYTER------- 460 (775)
T ss_pred ---------e--------------------------------------------------------hhhHHHH-------
Confidence 0 0000000
Q ss_pred CccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHH
Q 004290 400 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (763)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~ 479 (763)
+|+...+.....|+..-+++
T Consensus 461 ------------------------------------------------------------aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 461 ------------------------------------------------------------AHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred ------------------------------------------------------------hhcccccceEecCCCceEEe
Confidence 00111111111122111111
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCC
Q 004290 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE 559 (763)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (763)
+
T Consensus 481 ~------------------------------------------------------------------------------- 481 (775)
T KOG0319|consen 481 G------------------------------------------------------------------------------- 481 (775)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCC
Q 004290 560 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG 639 (763)
Q Consensus 560 ~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~ 639 (763)
+.....++|..........+.||+..+.|++ |++++
T Consensus 482 ----------------------------------------SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----Fs~~d 517 (775)
T KOG0319|consen 482 ----------------------------------------SQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----FSKND 517 (775)
T ss_pred ----------------------------------------ccccceeeecccCceEEEEeeCCccceEEEE----ecccc
Confidence 1233344555555667889999999999999 99999
Q ss_pred CEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCC
Q 004290 640 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD 714 (763)
Q Consensus 640 ~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~ 714 (763)
+.|||+|.|++|+||.+.++.++++|.||+..|..++|-.++..|+|+|.||.||||++++.++..++.+|..++
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999884
No 8
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-39 Score=313.78 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=168.7
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
+..++|+.|++.|.-+.||++|++|||++.|.++.||++.... ..+++ .+|..+|..+.|+|+ +++|++|+.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence 4557789999999999999999999999999999999986543 35666 799999999999999 79999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
.+.+||+.++.. ...+ .+|...+.+.+|.| ++..|++|+.|++|..||+.....-
T Consensus 292 ~~~lwDv~tgd~----------~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~------------- 347 (519)
T KOG0293|consen 292 VLSLWDVDTGDL----------RHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG------------- 347 (519)
T ss_pred heeeccCCcchh----------hhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------
Confidence 999999998543 2222 23568899999999 6688999999999999999875421
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
-|. ......|.+++..++ |+++++.+.|..|++|+..+...+... ..
T Consensus 348 ~W~------------gvr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~li--------------------se 394 (519)
T KOG0293|consen 348 NWE------------GVRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLI--------------------SE 394 (519)
T ss_pred ccc------------ccccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhccc--------------------cc
Confidence 010 001245889999998 789999999999999998865432111 11
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+. +|++.++|.||+++++.-.+..|++||+..
T Consensus 395 ~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 395 EQ--PITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred cC--ceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 22 599999999999999999999999999985
No 9
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=326.19 Aligned_cols=400 Identities=32% Similarity=0.537 Sum_probs=321.9
Q ss_pred CchhhhhhccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004290 9 GSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (763)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~ 88 (763)
++.-.-+.+|+++.+..+.+.+-....+++++.+...|.+|.++|+.|.|+..|..|+|||.|.+|.+||+..+.....+
T Consensus 101 w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f 180 (559)
T KOG1334|consen 101 WQSGTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF 180 (559)
T ss_pred cchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc
Confidence 44455677889998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC
Q 004290 89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (763)
Q Consensus 89 ~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~ 168 (763)
..+|...|+...|.|.++..-+++++.||.|++=.+..... + +-...+..|.++|+.++..|..+.-|.|++.
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-~------e~t~rl~~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY-V------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc-e------ecceecccccCccceeeecCCCCCccccccc
Confidence 89999999999999998788999999999999887764322 1 2234556799999999999999999999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
|+.+.-+|++...... .+. .+. .........++|+.+|.+.+.|++|+.|..+|+||.+..
T Consensus 254 D~~v~~~Dlr~~~pa~-----------~~~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVPAE-----------KFV-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred ccceeeeeeccCCccc-----------eee-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 9999999999876331 111 000 001113467899999998889999999999999999976
Q ss_pred CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeee
Q 004290 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (763)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 328 (763)
+.-.. ...+..|+|.|+....+. .|++++|+.++..|+++..|-.|++|.-..+.- .
T Consensus 315 ~~e~~-------n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G--------~------ 371 (559)
T KOG1334|consen 315 DKEEN-------NGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLFNKSMGDG--------S------ 371 (559)
T ss_pred hhccc-------cchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEeccccccC--------C------
Confidence 53321 135678889998773333 599999999999999999999999994333210 0
Q ss_pred eccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhh
Q 004290 329 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC 408 (763)
Q Consensus 329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (763)
.
T Consensus 372 -~------------------------------------------------------------------------------ 372 (559)
T KOG1334|consen 372 -E------------------------------------------------------------------------------ 372 (559)
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (763)
Q Consensus 409 ~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (763)
++|..
T Consensus 373 ---------------------------p~~~s------------------------------------------------ 377 (559)
T KOG1334|consen 373 ---------------------------PDPSS------------------------------------------------ 377 (559)
T ss_pred ---------------------------CCCCc------------------------------------------------
Confidence 00000
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccc
Q 004290 489 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL 568 (763)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (763)
T Consensus 378 -------------------------------------------------------------------------------- 377 (559)
T KOG1334|consen 378 -------------------------------------------------------------------------------- 377 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCC
Q 004290 569 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD 648 (763)
Q Consensus 569 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D 648 (763)
....-..+.|+||+|..| ||.++||+|...|++|||++
T Consensus 378 -----------------------------------------~~~~~~k~vYKGHrN~~T-VKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 378 -----------------------------------------PREQYVKRVYKGHRNSRT-VKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred -----------------------------------------chhhccchhhcccccccc-cceeeeccCccceEEecCcc
Confidence 000013345999999999 99999999999999999999
Q ss_pred CcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCChhhHHHHHHHHHHH
Q 004290 649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRK 728 (763)
Q Consensus 649 g~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~~~~~~~~~~n~~~ 728 (763)
|.|+|||..++++|+.++|....|+||..||..++|||+|+|.-||||.+.+.+..... ..+++++++|...
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~--------~~lk~vi~rN~~~ 487 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEP--------TLLKQVIKRNKRE 487 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccCh--------hhHHHHHhhhccc
Confidence 99999999999999999999889999999999999999999999999999777755432 2577899988876
Q ss_pred hhc-ccccCCcHHH
Q 004290 729 LSR-NREHSLSYEL 741 (763)
Q Consensus 729 ~~~-~~~~~~~~~~ 741 (763)
..+ .....++++.
T Consensus 488 ~~ed~~~~t~~~d~ 501 (559)
T KOG1334|consen 488 RDEDSLTVTDPFDQ 501 (559)
T ss_pred cccccccccCcHHH
Confidence 443 3334466663
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.3e-39 Score=316.72 Aligned_cols=210 Identities=19% Similarity=0.307 Sum_probs=179.2
Q ss_pred ccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290 41 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
+.++.+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++ .+|..+|.+++|+++ |..|+|++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc--CCeeeeeeccee
Confidence 67899999999999999999 899999999999999999976 8899999 899999999999999 899999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
|++||++++. ++..+. -...++|+.|+|++.+.|++|+.|+.|+.||+|+++.
T Consensus 282 lKlwDtETG~----------~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---------------- 334 (503)
T KOG0282|consen 282 LKLWDTETGQ----------VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---------------- 334 (503)
T ss_pred eeeeccccce----------EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----------------
Confidence 9999999843 345554 4557899999998889999999999999999999873
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
+.....|...|..+.|-+. +.++++.+.|+.++||+.+..-++..... ...|
T Consensus 335 ---------vqeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~-----------------~~~h- 386 (503)
T KOG0282|consen 335 ---------VQEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIAD-----------------PEMH- 386 (503)
T ss_pred ---------HHHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcc-----------------hhhc-
Confidence 3333457788999999997 78999999999999999997654322210 0112
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
...+|..+|+++++++=+.|+.|.+|.+..
T Consensus 387 --smP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 387 --TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred --cCcceecCCCCCeehhhccCceEEEEeccc
Confidence 377899999999999999999999998655
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=287.77 Aligned_cols=209 Identities=24% Similarity=0.322 Sum_probs=179.3
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
.++..+.||++.|+.+.|+|+|..||||+.|..|.+|++.... -..++ .+|.+.|..+.|.++ +..|++++.|++|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTV 114 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceE
Confidence 3456678999999999999999999999999999999965443 34445 799999999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+.||++++ +.++.+++|.+.|+.+.-...+..++.|++.||++++||+|+...+..
T Consensus 115 ~~wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t-------------- 170 (338)
T KOG0265|consen 115 RGWDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT-------------- 170 (338)
T ss_pred EEEecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--------------
Confidence 99999984 347889999999999996666778999999999999999998763310
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
......++++.|... +..+.+|+-|+.|++||++.......+ .||..
T Consensus 171 ------------~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D 217 (338)
T KOG0265|consen 171 ------------FENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD 217 (338)
T ss_pred ------------cccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC
Confidence 123567899999987 689999999999999999987654433 56777
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.|+.+..+|+|.++++.+.|.++++||++.
T Consensus 218 -tIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 218 -TITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred -ceeeEEeccCCCccccccccceEEEEEecc
Confidence 699999999999999999999999999987
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-38 Score=307.15 Aligned_cols=261 Identities=19% Similarity=0.258 Sum_probs=235.3
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEEEeC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE 168 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s~s~ 168 (763)
.+-+.+|..+.|+++ +..|+||+.+|.+++|...+. ..+.+|.+|...|.++.|+|. +...++||+.
T Consensus 172 ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~----------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQC----------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred ccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCc----------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence 467789999999999 799999999999999999863 448899999999999999997 4678999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
||++++|++.+..+ +....+|...|..++|+|+ |++|++++.|.+-|+||++++
T Consensus 240 Dgtvklw~~~~e~~-------------------------l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 240 DGTVKLWKLSQETP-------------------------LQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred CCceeeeccCCCcc-------------------------hhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccc
Confidence 99999999987653 4445678889999999997 899999999999999999987
Q ss_pred CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeee
Q 004290 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (763)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 328 (763)
..+. ...||.. .|.+++|.|||..+++|+.|..-+|||++++.
T Consensus 294 ~ElL--------------------~QEGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---------------- 336 (459)
T KOG0272|consen 294 SELL--------------------LQEGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---------------- 336 (459)
T ss_pred hhhH--------------------hhccccc-ccceeEecCCCceeeccCccchhheeecccCc----------------
Confidence 6432 1267777 59999999999999999999999999999953
Q ss_pred eccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhh
Q 004290 329 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC 408 (763)
Q Consensus 329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (763)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0272|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (763)
Q Consensus 409 ~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (763)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0272|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccc
Q 004290 489 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL 568 (763)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (763)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0272|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCC
Q 004290 569 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD 648 (763)
Q Consensus 569 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~D 648 (763)
+++.+.||...|..+. |+|+|..|||||.|
T Consensus 337 ----------------------------------------------~im~L~gH~k~I~~V~----fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 337 ----------------------------------------------CIMFLAGHIKEILSVA----FSPNGYHLATGSSD 366 (459)
T ss_pred ----------------------------------------------EEEEecccccceeeEe----ECCCceEEeecCCC
Confidence 4456889999999888 99999999999999
Q ss_pred CcEEEEEcCcCcEEEEEecCCcceEEEEeeC-CCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCCh
Q 004290 649 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP-FDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (763)
Q Consensus 649 g~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp-~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~ 715 (763)
++++|||+.--+++.++.+|...|+.|.|+| .|++|+|+|.|+++|||...+..++.++.||.+.+.
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 9999999999999999999999999999999 679999999999999999999999999999999875
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=292.95 Aligned_cols=222 Identities=16% Similarity=0.264 Sum_probs=188.5
Q ss_pred cccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcE
Q 004290 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL 109 (763)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 109 (763)
.+.....+.+..+...+.||..+|+.+-|+|+-.++|+++.|++|++||..++++...+ .||...|.++.|+.. |.+
T Consensus 88 ~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~ 164 (406)
T KOG0295|consen 88 KRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKY 164 (406)
T ss_pred ccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccE
Confidence 33344456667777888999999999999999999999999999999999999998888 899999999999998 899
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (763)
Q Consensus 110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 189 (763)
|++++.|-.+++||..+. .++++.+.+|...|.++.|-| .+.++++++.|.+|++|++.++-
T Consensus 165 l~tcSsDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~-------- 226 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGY-------- 226 (406)
T ss_pred EEecCCccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccce--------
Confidence 999999999999999863 255788889999999999999 45899999999999999999875
Q ss_pred CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
.+..+++|...|..++.+.+ |.++|+++.|.++++|-+.+++....+
T Consensus 227 -----------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~k~~l--------------- 273 (406)
T KOG0295|consen 227 -----------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQCKAEL--------------- 273 (406)
T ss_pred -----------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccchhhhhh---------------
Confidence 34455678889999999997 789999999999999999987543332
Q ss_pred ccccCCCCCccceeEEEEcCC---------------CCEEEEEeCCCeEEEEECCCC
Q 004290 270 MHLSEHGRSSLHLTHVTFSPN---------------GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 270 ~~~~~~g~~~~~i~~v~~spd---------------g~~l~~~s~d~~i~iwd~~~~ 311 (763)
++|.. +|-+++|.|. +.++.+++.|++|++||+.++
T Consensus 274 -----R~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 274 -----REHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred -----hcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 23333 4777777652 358999999999999999884
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=300.37 Aligned_cols=199 Identities=24% Similarity=0.402 Sum_probs=170.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
+-+|+.|.|.|+|+.|++|+..|.+.+|+..+ -....+.+.|..+|.++.|+++ +..++||+.+|.|++|+...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnm--- 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNM--- 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccch---
Confidence 45799999999999999999999999999733 2223344799999999999999 89999999999999999985
Q ss_pred CCCCCCCCCCceeeeccc-CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
.-++.+.+|. ..|++++|+| +...|+|++.||+|+|||.+..+..
T Consensus 170 --------nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee------------------------- 215 (464)
T KOG0284|consen 170 --------NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE------------------------- 215 (464)
T ss_pred --------hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh-------------------------
Confidence 3356666665 9999999999 5578889999999999999887632
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
....+|.-.|.+++|+|.. .++|+|+.|..|++||.+++..+.++ ++|.+ .|..+.|.
T Consensus 216 ~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f~ 273 (464)
T KOG0284|consen 216 RVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKFN 273 (464)
T ss_pred heeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEEc
Confidence 1114678899999999984 69999999999999999999766554 66777 59999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC
Q 004290 289 PNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 289 pdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|++++|++++.|..+++||+++
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred CCCCeeEEccCCceEEEEehhH
Confidence 9999999999999999999986
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-36 Score=301.02 Aligned_cols=250 Identities=14% Similarity=0.191 Sum_probs=179.1
Q ss_pred hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
+.+......+.+|...++-..|+|.|.++|||...|+|||||....+ .++.-.+.-.++|..+.|+++ ++.|+..++
T Consensus 46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGE 123 (603)
T KOG0318|consen 46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGE 123 (603)
T ss_pred CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEec
Confidence 34445567788999999999999999999999999999999987633 222222444566666666666 344444332
Q ss_pred C----CcEEEEECCCCCCCCC-------------------------------CCCCCCCceeeecccCceeEEEEecCCC
Q 004290 116 D----AEVRLFNLSRFSGRGL-------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 116 d----g~I~iwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
. |.+.+||..+.-+... .....+...++..|...|+|+.|+| ++
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG 202 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DG 202 (603)
T ss_pred CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CC
Confidence 1 2345555443222110 0001233455667999999999999 57
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
.+|+|++.||+|.+||=.+++.. ..+....+|.+.|.+++|+|| +..|++++.|.++
T Consensus 203 ~~Fat~gsDgki~iyDGktge~v----------------------g~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKV----------------------GELEDSDAHKGSIFALSWSPD-STQFLTVSADKTI 259 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEE----------------------EEecCCCCccccEEEEEECCC-CceEEEecCCceE
Confidence 99999999999999998888632 234445689999999999998 7899999999999
Q ss_pred EEEeCCCCCCCcccCCCCC-------------------CCCcccccccccc----cCCCCCccceeEEEEcCCCCEEEEE
Q 004290 241 RLYDRRMLPPLTSCQKRMS-------------------PPPCVNYFCPMHL----SEHGRSSLHLTHVTFSPNGEEVLLS 297 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~----~~~g~~~~~i~~v~~spdg~~l~~~ 297 (763)
+|||+.+.+.+.++..... ....+.++.+.+. ...||.. .|++++.+|++++|++|
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEee
Confidence 9999999887766643322 0111222222221 1257877 69999999999999999
Q ss_pred eCCCeEEEEECCCCCc
Q 004290 298 YSGEHVYLMDVNHAGG 313 (763)
Q Consensus 298 s~d~~i~iwd~~~~~~ 313 (763)
+.||.|.-|++.++..
T Consensus 339 syDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTS 354 (603)
T ss_pred ccCceEEEEecCCccc
Confidence 9999999999998654
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-35 Score=269.50 Aligned_cols=214 Identities=22% Similarity=0.284 Sum_probs=181.5
Q ss_pred cccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290 40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~-----~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+.+..+|++|++.|+.++..+. ...|++++.|.++.+|++. .|..++.+ .||...|..+..+++ +++.+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEec
Confidence 4566789999999999999886 5789999999999999875 35667778 799999999999999 7999999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
+.|+++++||+..+ ++.+.|.+|...|.+++|+| +...++||+.|++|++|++.....
T Consensus 82 swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck----------- 139 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK----------- 139 (315)
T ss_pred cccceEEEEEecCC----------cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE-----------
Confidence 99999999999974 44788999999999999999 557888999999999999876531
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (763)
..+ .. ..+...|.|+.|+|.. .-+|++++.|++|++||+++.+....+
T Consensus 140 -~t~---~~---------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~------------------ 188 (315)
T KOG0279|consen 140 -YTI---HE---------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF------------------ 188 (315)
T ss_pred -EEE---ec---------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc------------------
Confidence 111 11 1226799999999973 458999999999999999987755443
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.||.. .++.+++||||..+++|+.||.+.+||++.++
T Consensus 189 --~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 189 --IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred --ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 45666 59999999999999999999999999999854
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=265.38 Aligned_cols=208 Identities=23% Similarity=0.337 Sum_probs=179.9
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
+..+.|..|+++|+.+.|+-||++.++++.|++|++|+...+.+++++ .+|...|..++.+.+ +..|++|+.|+.|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEE
Confidence 346778899999999999999999999999999999999999999999 899999999999999 68999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
+||++++ +.++.+.+|...|+.++|+. +...+++|+.|.++++||.|+....
T Consensus 85 vwDV~TG----------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e----------------- 136 (307)
T KOG0316|consen 85 VWDVNTG----------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE----------------- 136 (307)
T ss_pred EEEcccC----------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC-----------------
Confidence 9999984 44889999999999999997 6689999999999999999987532
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
++.........|.++..+. ..|++|+.||++|.||+|.++..... .|+
T Consensus 137 ------PiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy--------------------~g~--- 184 (307)
T KOG0316|consen 137 ------PIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY--------------------FGH--- 184 (307)
T ss_pred ------ccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh--------------------cCC---
Confidence 2222233456788888875 48999999999999999998643211 122
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+|+++.|++|++.+++++-|+++++.|-.++
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchh
Confidence 6999999999999999999999999987774
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=263.01 Aligned_cols=233 Identities=15% Similarity=0.256 Sum_probs=190.6
Q ss_pred cCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceE
Q 004290 20 TDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVF 97 (763)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~ 97 (763)
+..+.+.|++|++|+ ..+.++.++++-..+.|+.|...|+++.||.++. ..||+||+.++. .+.+| .+|+..|+
T Consensus 12 iLvsA~YDhTIRfWq--a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVt 87 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQ--ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVT 87 (311)
T ss_pred EEEeccCcceeeeee--hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceE
Confidence 345688999999999 6778899999977889999999999999999887 589999998765 57778 79999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
++.|..+ |+.+++|+.||+++|||++... .+....|..+|+++..+| +...|++|..+|.|++||+
T Consensus 88 aVgF~~d--grWMyTgseDgt~kIWdlR~~~-----------~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 88 AVGFQCD--GRWMYTGSEDGTVKIWDLRSLS-----------CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEEeec--CeEEEecCCCceEEEEeccCcc-----------cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEc
Confidence 9999999 8999999999999999999732 233335789999999999 5567779999999999999
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
+....... -.|....+|.++...|+ |.+++.+...|..++|++-..+....+.
T Consensus 154 ~~~~c~~~------------------------liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l~-- 206 (311)
T KOG0315|consen 154 GENSCTHE------------------------LIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASELE-- 206 (311)
T ss_pred cCCccccc------------------------cCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccce--
Confidence 98753211 01223467899999997 7899999999999999998754333221
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.+-. ..|.. .|..+.+|||+++|++++.|.+++||++.+
T Consensus 207 -----------P~~k~-~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 207 -----------PVHKF-QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred -----------Ehhhe-ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 11111 33544 699999999999999999999999998877
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-36 Score=314.57 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=152.5
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
.++..-...++|+.|++|+.+||.|-.|..|++|.+... .++.+ . + ..+.. .+=+.+.|-.+.+.|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l-k-~------~~~l~-----~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL-K-D------ASDLS-----NIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc-c-c------hhhhc-----cccccccchhhhhcc
Confidence 444444567999999999999999999999999998754 33333 1 1 11221 222334444456666
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
.... .....+-+|.++|+...|+| +.++|+++++|++|++|.+.+....
T Consensus 438 ~~~~----------~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~-------------------- 486 (707)
T KOG0263|consen 438 DDSS----------GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL-------------------- 486 (707)
T ss_pred ccCC----------ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE--------------------
Confidence 5542 22566889999999999999 5689999999999999999987632
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
....+|..+|..+.|+|. |.+||+++.|++.++|.....++++.+ .||-+ .|.
T Consensus 487 -----V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRif--------------------aghls-DV~ 539 (707)
T KOG0263|consen 487 -----VIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIF--------------------AGHLS-DVD 539 (707)
T ss_pred -----EEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhh--------------------ccccc-ccc
Confidence 223478999999999996 899999999999999999887665544 45555 499
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|+.|+|+..|+++||.|.+|++||+.++
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCC
Confidence 9999999999999999999999999885
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=313.72 Aligned_cols=212 Identities=26% Similarity=0.421 Sum_probs=180.9
Q ss_pred ccceeeccc-cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 41 ~~~~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
.....+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+ .++.+ .+|...|.+++|+|+ +.++++++.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCc
Confidence 345556555 7899999999999999999999999999998777 66666 799999999999999 78999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
+|+|||+... + ..++++++|...|++++|+|++ +++++|+.|++|++||+++++.
T Consensus 226 tiriwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~--------------- 280 (456)
T KOG0266|consen 226 TLRIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC--------------- 280 (456)
T ss_pred eEEEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---------------
Confidence 9999999432 1 3478999999999999999966 9999999999999999998752
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC--CcccCCCCCCCCcccccccccccCC
Q 004290 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
+....+|...|++++|+++ +++|++++.|+.|+|||+.++.. +..+ .
T Consensus 281 ----------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--------------------~ 329 (456)
T KOG0266|consen 281 ----------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLL--------------------S 329 (456)
T ss_pred ----------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecc--------------------c
Confidence 2233467889999999997 78999999999999999999873 2222 1
Q ss_pred CCCcc-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 276 GRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 276 g~~~~-~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
++... +++.++|+|++.+|++++.|+.+++||+..+
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 22222 5999999999999999999999999999884
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-33 Score=281.06 Aligned_cols=262 Identities=18% Similarity=0.282 Sum_probs=194.1
Q ss_pred ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--cCCCCceEEEEEe
Q 004290 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFV 102 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~--~~h~~~V~~v~~~ 102 (763)
+-|..+.+++ -..+|.-.+++.|...|+|+.|+|||+++||++.||+|.|||=.+|+.+..+. .+|.+.|+++.|+
T Consensus 167 sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs 244 (603)
T KOG0318|consen 167 SDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS 244 (603)
T ss_pred cCCCeEEEee--CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence 3456666666 34456667889999999999999999999999999999999999999999883 2899999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCC---------------------------------CCCCCCCCceeeecccCc
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRG---------------------------------LDDNAITPSALYQCHTRR 149 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~~ 149 (763)
|+ +..|++++.|.+++|||+.+.+... +......++..+.+|...
T Consensus 245 PD--s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 245 PD--STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred CC--CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 99 6999999999999999998643211 011223467788899999
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE-------------------ec----------
Q 004290 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL-------------------DL---------- 200 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------------~~---------- 200 (763)
|+++..+| ++.+|++|+.||.|.-||..++.........|......+. ++
T Consensus 323 ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 323 ITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred eeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 99999999 5599999999999999999988765333233321111110 00
Q ss_pred -------------CCC---------ceeeccCC-----CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290 201 -------------RCG---------AKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (763)
Q Consensus 201 -------------~~~---------~~~~~~~~-----~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 253 (763)
..+ ....+... ..-.....+++++|+ ++.+++|+.|+.|+||.+........
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCcccce
Confidence 000 00000000 011223568899997 78999999999999999986543211
Q ss_pred cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .+ ..|.. +|++|+||||+.||+++...+.+.+||+.+.
T Consensus 481 ~----------------~~--~~h~a-~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 481 A----------------KL--LEHRA-AITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred e----------------ee--ecccC-CceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 0 00 12444 6999999999999999999999999999884
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.7e-35 Score=276.68 Aligned_cols=212 Identities=19% Similarity=0.282 Sum_probs=184.1
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
-.+++.+.++||.+.|.|+++.|-.++++||+.|++++|||+.+|+...++ .||...|..+++++. -.+|++++.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~gedk 215 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAGEDK 215 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEecCCC
Confidence 456888999999999999999999999999999999999999999999999 899999999999998 58999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
.|+.||++. .+.++.+.+|-..|+|++.+| .-..|+||+.|.++++||+|+..
T Consensus 216 ~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~---------------- 268 (460)
T KOG0285|consen 216 QVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA---------------- 268 (460)
T ss_pred eeEEEechh----------hhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc----------------
Confidence 999999996 255888899999999999999 45789999999999999999875
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
.+....+|..+|.++.+.|.++ .+++|+.|++|++||++.++...++ . |
T Consensus 269 ---------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tl--------------------t-~ 317 (460)
T KOG0285|consen 269 ---------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITL--------------------T-H 317 (460)
T ss_pred ---------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEee--------------------e-c
Confidence 2344567899999999999865 7999999999999999998755433 1 2
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....|.+++.+|....+++++.| .|+.|++..+
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEG 350 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence 23359999999998877777766 5777877663
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.6e-34 Score=260.91 Aligned_cols=219 Identities=21% Similarity=0.309 Sum_probs=183.5
Q ss_pred cccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
+-.++.++||++.|..++|+|- |.+||||+.|+.|+||+... -.+...+..+|+..|.+++|+|. |++|++|+.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeec
Confidence 5667889999999999999997 89999999999999999884 34566666789999999999999 799999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
|.++.||.-..+. ++++.++.+|...|.+++|++ ++++|++|+.|+.|-||.+..... .+|
T Consensus 82 D~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------fec-- 142 (312)
T KOG0645|consen 82 DATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------FEC-- 142 (312)
T ss_pred cceEEEeecCCCc--------eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------EEE--
Confidence 9999999877543 466899999999999999999 779999999999999999875431 222
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
+...+.|+..|..+.|+|. ..+|++++.|++|++|+-.....- .|++.+ .
T Consensus 143 ------------~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW----------~c~~tl-------~ 192 (312)
T KOG0645|consen 143 ------------IAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW----------ECVQTL-------D 192 (312)
T ss_pred ------------EeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCe----------eEEEEe-------c
Confidence 3334568889999999997 579999999999999987632211 233332 5
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
||.+ .|.+++|+|.|..|++++.|++|+||...+
T Consensus 193 g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 193 GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred Cccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 5666 599999999999999999999999997554
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=281.18 Aligned_cols=195 Identities=17% Similarity=0.324 Sum_probs=165.9
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
....|.|+.+. ...+++|..|.+|+|||..+..+++.+ .||++.|.|+.|. .+.|++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG- 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC-
Confidence 45679999974 567999999999999999999999888 8999999999997 469999999999999999983
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
+++.++.+|...|..+.|+. .+++|++.|.+|.+||+.....+ ...
T Consensus 268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i----------------------t~r 313 (499)
T KOG0281|consen 268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI----------------------TLR 313 (499)
T ss_pred ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH----------------------HHH
Confidence 56889999999999999974 58999999999999999886521 112
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
....+|...|+.+.|+. +++++++.|.+|++|++.+++.+.++ +||.. .|-|+.+
T Consensus 314 rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkR-GIAClQY- 368 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKR-GIACLQY- 368 (499)
T ss_pred HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--------------------hcccc-cceehhc-
Confidence 22346888999999975 59999999999999999998665544 66766 3877766
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC
Q 004290 289 PNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 289 pdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|+++++|+.|.+|++||+..|
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred -cCeEEEecCCCceEEEEecccc
Confidence 6899999999999999999885
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=295.38 Aligned_cols=234 Identities=18% Similarity=0.236 Sum_probs=188.1
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEe-CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISW-NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~f-sp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
+..+.+++ ...+++.+.+-|..+.|..++| .|+..+||.++..+.+|++++.+..+. +..||+..|.++.....
T Consensus 302 eQnl~l~d--~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~- 376 (775)
T KOG0319|consen 302 EQNLFLYD--EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSS- 376 (775)
T ss_pred cceEEEEE--ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeeccc-
Confidence 34455553 5677788888899999999998 567899999999999999999888776 44899999999995444
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
|.+|+||+.|.++++|.++..... ..++....+|.+.|.+++++..+..+|+++|.|+++++|++...+....
T Consensus 377 -g~llat~sKD~svilWr~~~~~~~------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 377 -GDLLATGSKDKSVILWRLNNNCSK------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred -CcEEEEecCCceEEEEEecCCcch------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 689999999999999999543222 2456777899999999999887888999999999999999988442200
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
...+ ........|...|++++++|+ .++|||||.|.+.+||++..+..+.++
T Consensus 450 --------~~~~--------~~~~t~~aHdKdIN~Vaia~n-dkLiAT~SqDktaKiW~le~~~l~~vL----------- 501 (775)
T KOG0319|consen 450 --------PIVL--------TCRYTERAHDKDINCVAIAPN-DKLIATGSQDKTAKIWDLEQLRLLGVL----------- 501 (775)
T ss_pred --------ccee--------hhhHHHHhhcccccceEecCC-CceEEecccccceeeecccCceEEEEe-----------
Confidence 0010 011122457889999999997 589999999999999999966544433
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.||.. .|.+|.|+|..+.|+++|.|.+|+||.+.+
T Consensus 502 ---------sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 502 ---------SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred ---------eCCcc-ceEEEEeccccceeEeccCCceEEEEEecc
Confidence 56777 499999999999999999999999999887
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=299.55 Aligned_cols=434 Identities=19% Similarity=0.232 Sum_probs=314.4
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
.+..+++|+...+ ....+|.||+..|+++.|...|..|||||.|+.|.+||+-...-+..+ .||...|+.+-|...
T Consensus 85 aDGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~- 160 (888)
T KOG0306|consen 85 ADGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG- 160 (888)
T ss_pred cCceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC-
Confidence 4678899984433 778889999999999999999999999999999999999887778888 899999999999986
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC----
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS---- 181 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~---- 181 (763)
.+++++.+.|+.|++||+.+. .+..+.-.|.+.|..+++.+ ..+++++.|+.+++|++....
T Consensus 161 -~~~lvS~sKDs~iK~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 161 -DSFLVSVSKDSMIKFWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred -CeEEEEeccCceEEEEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccccc
Confidence 589999999999999999973 45777888999999999976 688899999999999992100
Q ss_pred --------------------CC---------------------------------------------CC-----------
Q 004290 182 --------------------SC---------------------------------------------PP----------- 185 (763)
Q Consensus 182 --------------------~~---------------------------------------------~~----------- 185 (763)
.. ..
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 00 00
Q ss_pred ----------------------CCCCCcc--------cceEEEecCC-Cc------eeeccCCCCCccceEEEEEeCCCC
Q 004290 186 ----------------------AGSSHQE--------CRNILLDLRC-GA------KRSLADPPKQTLSLKSCDISSTRP 228 (763)
Q Consensus 186 ----------------------~~~~~~~--------~~~~~~~~~~-~~------~~~~~~~~~~~~~v~~i~~~p~~~ 228 (763)
...+... ....++.+.. .. ...-....+|...|.+++++.+
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-- 384 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-- 384 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC--
Confidence 0000000 0011111111 00 0011234678899999999996
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 229 ~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
+.++..+..+.|+||+..+++.+.++. .. .+.+..|.|.++++++|...|.+.+||+
T Consensus 385 ~~~~~Sga~~SikiWn~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred ceeeeecCCCcEEEEEccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEEEe
Confidence 355555567899999999987665542 11 4889999999999999999999999999
Q ss_pred CCCCccceEeecCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhH
Q 004290 309 NHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACN 388 (763)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 388 (763)
.+.........|...++.++.+|++.+....+...
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk--------------------------------------------- 476 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK--------------------------------------------- 476 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCc---------------------------------------------
Confidence 99876667778888999999998866543332211
Q ss_pred HHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHh
Q 004290 389 EVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (763)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 468 (763)
..+-|+.
T Consensus 477 --------------------------tVkfWdf----------------------------------------------- 483 (888)
T KOG0306|consen 477 --------------------------TVKFWDF----------------------------------------------- 483 (888)
T ss_pred --------------------------EEEEEeE-----------------------------------------------
Confidence 0111221
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCCC-CCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhh
Q 004290 469 CLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGA-RSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEV 547 (763)
Q Consensus 469 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 547 (763)
..... .++.++ ....+..+++.+.+.++--+ .|+|+
T Consensus 484 -----------------------~l~~~--~~gt~~k~lsl~~~rtLel~ddvL~v~----~Spdg-------------- 520 (888)
T KOG0306|consen 484 -----------------------KLVVS--VPGTQKKVLSLKHTRTLELEDDVLCVS----VSPDG-------------- 520 (888)
T ss_pred -----------------------EEEec--cCcccceeeeeccceEEeccccEEEEE----EcCCC--------------
Confidence 00000 000000 01112222333322111000 00000
Q ss_pred hccccCCCCCCCCcccccccccCCcceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeeccccc
Q 004290 548 EVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGT 627 (763)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~ 627 (763)
..-.++.-+..+.+.-..+.+..-.+.||..++.
T Consensus 521 ----------------------------------------------k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 521 ----------------------------------------------KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL 554 (888)
T ss_pred ----------------------------------------------cEEEEEeccCeEEEEEecceeeeeeeccccccee
Confidence 0000112334444555667778888999999999
Q ss_pred ceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCcccc
Q 004290 628 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS 707 (763)
Q Consensus 628 ~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~ 707 (763)
|+. +|||++.|+|||.|++|+||-++-|.|-+.|.||.+.|++|+|-|...++.|+|.|+.||-||-..-+.+..+
T Consensus 555 smD----IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 555 SMD----ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred EEe----ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 004290 708 GGAAGP 713 (763)
Q Consensus 708 ~g~~~~ 713 (763)
.||...
T Consensus 631 ~~H~~e 636 (888)
T KOG0306|consen 631 DGHHSE 636 (888)
T ss_pred ccchhe
Confidence 888765
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-33 Score=265.54 Aligned_cols=212 Identities=17% Similarity=0.262 Sum_probs=179.9
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
.-+..|.+|++.|.+++.+|+.+++|||+.|....||++.++.....+ .+|+..|+++.|+.+ +.+||||..+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEE
Confidence 456789999999999999999999999999999999999999988888 899999999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
||...++.. ...+..--..|-=|.|+| -+.+|+.|+.||.+.+|.+.+...+
T Consensus 132 v~~~stg~~----------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~----------------- 183 (399)
T KOG0296|consen 132 VFKVSTGGE----------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALC----------------- 183 (399)
T ss_pred EEEcccCce----------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCccee-----------------
Confidence 999998542 334444456677789999 6789999999999999999875321
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
..+.+|..++++-.|.|+ |+.++++..||+|++||+.+++++..+.. ....
T Consensus 184 --------kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~--------------------~e~~ 234 (399)
T KOG0296|consen 184 --------KVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQ--------------------AEGL 234 (399)
T ss_pred --------eEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecc--------------------cccC
Confidence 223467889999999998 89999999999999999999987654421 1122
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
..+++.+...+..++.|+.++.+++-+..+++
T Consensus 235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cCCccccccccceeEeccCCccEEEEccccce
Confidence 46778888999999999999999999888865
No 28
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-32 Score=256.63 Aligned_cols=216 Identities=22% Similarity=0.351 Sum_probs=173.5
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC--
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-- 115 (763)
+++++.+.|+.-.+.|++|.|+++|.+|++++.|.+++|||..+++.++++ ..+...|..++|... ...++.++.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~--~~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH--SNTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC--CceEEEccCCC
Confidence 456778888888899999999999999999999999999999999999999 567778899999877 456666665
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
|.+|+..++.. .+.++.|.||...|++|+.+|.+ ..|++++.|++|++||+|..++. .
T Consensus 79 d~tIryLsl~d----------NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq-----------g 136 (311)
T KOG1446|consen 79 DDTIRYLSLHD----------NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ-----------G 136 (311)
T ss_pred CCceEEEEeec----------CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc-----------e
Confidence 89999999987 35699999999999999999954 88899999999999999977633 1
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
.+. ...-..++|+|+ |-++|++.....|++||+|+... .+...|....
T Consensus 137 ~l~----------------~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dk-----------gPF~tf~i~~---- 184 (311)
T KOG1446|consen 137 LLN----------------LSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDK-----------GPFTTFSITD---- 184 (311)
T ss_pred EEe----------------cCCCcceeECCC-CcEEEEecCCCeEEEEEecccCC-----------CCceeEccCC----
Confidence 111 112346799997 78889988888999999997532 1111221110
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.....++.|.|||||++|+.++..+.+++.|.-+|
T Consensus 185 -~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 185 -NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred -CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 11225999999999999999999999999988774
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-32 Score=281.39 Aligned_cols=207 Identities=27% Similarity=0.417 Sum_probs=173.3
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
+++|++|.++|++++|+|++++|++++.|+.|++|++.+++....+ ..|...+..+.|+|+ +++|++++.|+.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 4567899999999999999999999999999999999988877777 689999999999999 6899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
|+... .....+..|...|.++.|+|+ +.++++++.|+.|++||+++.+..
T Consensus 79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~------------------- 128 (289)
T cd00200 79 DLETG----------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL------------------- 128 (289)
T ss_pred EcCcc----------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence 99863 236677789889999999994 678888888999999999865421
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i 282 (763)
.....+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+ ..+.. .|
T Consensus 129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i 180 (289)
T cd00200 129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV 180 (289)
T ss_pred ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence 111245667999999997 678888888999999999876544322 12332 59
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
++++|+|+++.|++++.|+.|++||+..
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999999999999999999999999876
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-33 Score=272.40 Aligned_cols=228 Identities=17% Similarity=0.230 Sum_probs=180.4
Q ss_pred eeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCC--eEE------EEEc-----cCCCCceEEEEEeeCCCCcE
Q 004290 44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--KLL------HSIE-----TGHSANVFCTKFVPETSDEL 109 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~--~~~------~~~~-----~~h~~~V~~v~~~p~~~~~~ 109 (763)
+.++ |+.+|.+.+|+|-.. +|++|+.|-+.++|++... ... +.+. ......|++++|+.+ |.+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~ 249 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTL 249 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCe
Confidence 4455 999999999999665 9999999999999998741 111 0010 122367999999999 899
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (763)
Q Consensus 110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 189 (763)
||+|+.||.++||+... ..+.++..|+++|.+|.|+. .+.+|++++.|+++.+||..+++..+
T Consensus 250 LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q----- 312 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQ----- 312 (524)
T ss_pred EEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEE-----
Confidence 99999999999999984 44788999999999999998 67899999999999999998876321
Q ss_pred CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
.. .-|..+-..+.|-.+ .-|++++.|+.|+++.+....++.++
T Consensus 313 -------~f-------------~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~--------------- 355 (524)
T KOG0273|consen 313 -------QF-------------EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF--------------- 355 (524)
T ss_pred -------ee-------------eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee---------------
Confidence 01 112233356777764 58999999999999999876554443
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (763)
Q Consensus 270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (763)
.||.+ .|.++.|.|.|..|++++.|++++||.............+...+..+.|+|...
T Consensus 356 -----~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 356 -----IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred -----ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 55666 699999999999999999999999999888776666677777777788888643
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-33 Score=258.22 Aligned_cols=227 Identities=19% Similarity=0.331 Sum_probs=192.7
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEccCCCCceE
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR------KLLHSIETGHSANVF 97 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~------~~~~~~~~~h~~~V~ 97 (763)
.+-+.++-+|+.+.........| -...|..++|+|.|+++|+|+.|+...||++.+. ...+.+ .+|++.+.
T Consensus 73 aSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylS 149 (343)
T KOG0286|consen 73 ASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLS 149 (343)
T ss_pred eccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee-cCccceeE
Confidence 45678889999777664444444 4789999999999999999999999999999855 233445 89999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
|+.|.++ ..|+|++.|.++.+||++++ ..+..|.+|.+.|.+|.++|.+++.|++|+-|++.++||+
T Consensus 150 cC~f~dD---~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 150 CCRFLDD---NHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred EEEEcCC---CceEecCCCceEEEEEcccc----------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 9999987 68999999999999999984 3478899999999999999988899999999999999999
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
|.+. ....+++|...|+++.|.|+ |.-|++|+.|+++|+||+|..+.+..+..+
T Consensus 217 R~~~-------------------------c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 217 RSGQ-------------------------CVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred cCcc-------------------------eeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence 9985 24456688999999999997 789999999999999999987765544311
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....+|++|+||..|++|++|+.|.++.+||.-.+
T Consensus 271 -------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 271 -------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred -------------------cccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 11226999999999999999999999999997663
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.2e-32 Score=316.32 Aligned_cols=204 Identities=18% Similarity=0.266 Sum_probs=163.7
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
+.+|.+.|.+++|+|+|++||+|+.|+.|+|||+.+. . ....+ .+...|.+++|+|.. +.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence 4569999999999999999999999999999997542 1 12233 345689999999864 68999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
+|++||+.+. ..+..+.+|.+.|++++|+|.++.+|+||+.||+|++||++++... ..+
T Consensus 556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~~~ 614 (793)
T PLN00181 556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------GTI 614 (793)
T ss_pred eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------EEE
Confidence 9999999863 3467788999999999999867789999999999999999876521 111
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCC
Q 004290 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
. +...+.++.|++.++.+|++|+.|+.|++||+++... +..+ .+
T Consensus 615 --------------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------------~~ 659 (793)
T PLN00181 615 --------------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------------IG 659 (793)
T ss_pred --------------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--------------------cC
Confidence 0 1235889999776689999999999999999986531 1111 34
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.. .|+++.|. ++.+|++++.|+.|++||+..
T Consensus 660 h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 660 HSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 554 59999997 778999999999999999876
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.8e-32 Score=261.73 Aligned_cols=229 Identities=18% Similarity=0.238 Sum_probs=172.8
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC-CCCcEEEEEeCCCcEEEEECCC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
.|.+.|.++... ++.++||++||.++|||.. |+++..+ .+|.++|.+++|.-. .....|++++.|.++++|-.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 388999998877 7899999999999999975 7788888 799999998888654 2134699999999999999987
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
+... ...+....||...|-++...+ ++..|++|+.|.+|++|+......-.............-.....+...
T Consensus 179 ~~~~------~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 179 GENK------VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred chhh------hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 5432 234455569999999999998 678999999999999999333221100000000000011111122233
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
++....+|..+|.++.|++ ...+++++.|.+|+.||+.++....++ ..+..++++.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~----------------------~~~ksl~~i~ 307 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL----------------------TTNKSLNCIS 307 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee----------------------ecCcceeEee
Confidence 5566678999999999998 469999999999999999998755433 1122599999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 287 FSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 287 ~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
++|...+|++|+.|..|++||.+++
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred cccccceeeecCCCCceeecCCCCC
Confidence 9999999999999999999999884
No 34
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-32 Score=249.75 Aligned_cols=228 Identities=19% Similarity=0.251 Sum_probs=188.5
Q ss_pred CCCcccccccccchhh---hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE
Q 004290 21 DTRPDVNHSLQMHSSL---VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97 (763)
Q Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~ 97 (763)
..+...++.+-.|+.. .+...+++.|+||...|+.+..++||++.++++.|+++++||+.+++..+.| .+|...|.
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVl 109 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVL 109 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceE
Confidence 3344556666666533 3445678999999999999999999999999999999999999999999888 89999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc--cCceeEEEEecCC-CCEEEEEeCCCcEEE
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQ 174 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~-~~~l~s~s~dg~i~i 174 (763)
+++|+|+ .+++++|+.|++|++|+.-. .+..++..+ .+.|.|+.|+|.. .-+|++++.|++|++
T Consensus 110 sva~s~d--n~qivSGSrDkTiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 110 SVAFSTD--NRQIVSGSRDKTIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV 176 (315)
T ss_pred EEEecCC--CceeecCCCcceeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence 9999999 69999999999999999984 224444333 7899999999963 468999999999999
Q ss_pred EECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
||+++.+. ...+.+|...++.++++|| |.++++|+.||.+.+||++.++.+.++
T Consensus 177 Wnl~~~~l-------------------------~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 177 WNLRNCQL-------------------------RTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EccCCcch-------------------------hhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEec
Confidence 99998763 2344578899999999998 789999999999999999988765443
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. +.. .|.+++|+|+..+|+.+ .+..|+|||+.++
T Consensus 231 ~---------------------a~~-~v~sl~fspnrywL~~a-t~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 231 E---------------------AFD-IVNSLCFSPNRYWLCAA-TATSIKIWDLESK 264 (315)
T ss_pred c---------------------CCC-eEeeEEecCCceeEeec-cCCceEEEeccch
Confidence 1 333 59999999997655554 4556999999985
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=249.91 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=175.0
Q ss_pred ceeeccccCceEEEEeCC---CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 43 ERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp---~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
-.+..||+.+|-.++||| +|-+|++++.|+.=.+-+-++|.-+.+| .+|.+.|++...+.+ ...-++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchh
Confidence 356789999999999986 8999999999999999999999999999 799999999999988 6888999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++||.-++. .+..|. |+..|..++|+. +.++|+||+.++.++|||+...+..
T Consensus 84 kvw~a~tgd----------elhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap---------------- 135 (334)
T KOG0278|consen 84 KVWDAVTGD----------ELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP---------------- 135 (334)
T ss_pred hhhhhhhhh----------hhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCC----------------
Confidence 999998754 266665 899999999998 6688899999999999999987643
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
.....+|...|..+-|... .+.|++++.|++||+||.+++..+.++.. .
T Consensus 136 --------p~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------~ 184 (334)
T KOG0278|consen 136 --------PKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------N 184 (334)
T ss_pred --------chhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------------C
Confidence 2233467888999999986 47899999999999999999987655421 1
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|+++.++++|++| +....+.|.+||..+.
T Consensus 185 s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSF 215 (334)
T ss_pred CCCcceeeccCCCEE-EEecCceeEEeccccc
Confidence 159999999999965 5555678999998884
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=276.77 Aligned_cols=215 Identities=20% Similarity=0.322 Sum_probs=173.0
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
.++.||...|.+++||.+...++||+. +.++||+..+.++++++. .+.+.+..|.|. ++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT---CGYILASKFVPG--DRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec---cccEEEEEecCC--CceEEEeccCCceEEEE
Confidence 457799999999999999998988876 599999999999999993 238899999999 79999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
+... ..+....+|.+.|.+|+.+| ++..++|||.|.+|++||..-.... ...+..+..+...
T Consensus 441 laS~----------~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~-------~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 441 LASA----------SLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSV-------PGTQKKVLSLKHT 502 (888)
T ss_pred eehh----------hhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEecc-------Ccccceeeeeccc
Confidence 9873 33667789999999999999 5678889999999999997643211 0011111111111
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
.. -.-...|.|+.++|+ +.+|+++--|++|+||-+.+.+..- ..+||.- ||.
T Consensus 503 rt------Lel~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFfl--------------------sLYGHkL-PV~ 554 (888)
T KOG0306|consen 503 RT------LELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFFL--------------------SLYGHKL-PVL 554 (888)
T ss_pred eE------EeccccEEEEEEcCC-CcEEEEEeccCeEEEEEecceeeee--------------------eeccccc-cee
Confidence 11 112457899999997 7999999999999999999875432 2277877 799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 284 HVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
++.+|||++++++|+.|.+|++|-++-
T Consensus 555 smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred EEeccCCcCeEEeccCCCceEEecccc
Confidence 999999999999999999999996654
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-32 Score=273.03 Aligned_cols=212 Identities=14% Similarity=0.292 Sum_probs=184.3
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
++..++|..|...|.++.|+|....++.+-.+|.|.|||.++...++.| .-..-+|.+..|.+. .+.+++|+.|..|
T Consensus 3 l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~I 79 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQI 79 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCceE
Confidence 3445566779999999999999999999999999999999999999999 667789999999998 6999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+||+.++. +.+..|.+|.+.|++|+.+|..+ +++|+|.|-+|++||....=.
T Consensus 80 rVfnynt~----------ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa----------------- 131 (794)
T KOG0276|consen 80 RVFNYNTG----------EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWA----------------- 131 (794)
T ss_pred EEEecccc----------eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCcee-----------------
Confidence 99999983 45899999999999999999664 677999999999999887532
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
....+.+|.-.|++++|+|.+.+.||+++-|++|++|.+....+..++ .||..
T Consensus 132 -------~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHek 184 (794)
T KOG0276|consen 132 -------CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHEK 184 (794)
T ss_pred -------eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------ecccc
Confidence 233456788899999999999999999999999999999876544433 56766
Q ss_pred cceeEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004290 280 LHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 280 ~~i~~v~~spd--g~~l~~~s~d~~i~iwd~~~ 310 (763)
.|++|.|-+- ..+|++|+.|.+|++||..+
T Consensus 185 -GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 185 -GVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred -CcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 4999999874 47999999999999999988
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-30 Score=270.45 Aligned_cols=256 Identities=15% Similarity=0.182 Sum_probs=188.5
Q ss_pred cccccchhh------hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEE
Q 004290 28 HSLQMHSSL------VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCT 99 (763)
Q Consensus 28 ~~~~~~~~~------~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v 99 (763)
+-+++|..- ...+.+.+++.||-+.|.++.|+.|.++|++|+.|.+++||+++..+. .+.+ .+|...|-++
T Consensus 117 n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~Vvac 195 (893)
T KOG0291|consen 117 NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVAC 195 (893)
T ss_pred ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEE
Confidence 455565531 233456678899999999999999999999999999999999987654 4555 7999999999
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC---------------CCC--CCC-------ceeeecccCceeEEEE
Q 004290 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD---------------DNA--ITP-------SALYQCHTRRVKKLAV 155 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---------------~~~--~~~-------~~~~~~h~~~v~~l~~ 155 (763)
-|..+ ...+++.+.||.+.+|........... ..+ ... ..-+......|++.+|
T Consensus 196 fF~~~--~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 196 FFGAN--SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF 273 (893)
T ss_pred EeccC--cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence 99998 578999999999999998832111100 000 000 0111222367999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc--------------------cceEEEecCCCceeeccCCCCCc
Q 004290 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE--------------------CRNILLDLRCGAKRSLADPPKQT 215 (763)
Q Consensus 156 sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (763)
++ +.++++++-..|...+|.+.....+....-+... .+..+|..... ..+...++|.
T Consensus 274 H~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~ 350 (893)
T KOG0291|consen 274 HK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHS 350 (893)
T ss_pred cC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccc
Confidence 99 7789999999999999998876654221111111 11222322211 1234457889
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~ 295 (763)
..+++++++|| |+++|+|+.||.|+|||.+++-+ .-+| ..|.+ .|+.++|+..|+.|+
T Consensus 351 ~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC-------------~vTF-------teHts-~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 351 DRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFC-------------FVTF-------TEHTS-GVTAVQFTARGNVLL 408 (893)
T ss_pred cceeeEEECCC-CcEEEeccCCCcEEEEeccCceE-------------EEEe-------ccCCC-ceEEEEEEecCCEEE
Confidence 99999999998 79999999999999999998743 3333 34666 599999999999999
Q ss_pred EEeCCCeEEEEECCCC
Q 004290 296 LSYSGEHVYLMDVNHA 311 (763)
Q Consensus 296 ~~s~d~~i~iwd~~~~ 311 (763)
+++-||+|+.||+...
T Consensus 409 ssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRY 424 (893)
T ss_pred EeecCCeEEeeeeccc
Confidence 9999999999999884
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-32 Score=256.71 Aligned_cols=188 Identities=16% Similarity=0.188 Sum_probs=158.4
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 164 (763)
...+ .+|..+|+.+.|+|. -.++++++.|++|++||..++ ++...+++|.+.+.+|+|+. .+.+++
T Consensus 101 ~~~l-~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg----------~~e~~LrGHt~sv~di~~~a-~Gk~l~ 166 (406)
T KOG0295|consen 101 VQKL-AGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETG----------ELERSLRGHTDSVFDISFDA-SGKYLA 166 (406)
T ss_pred hhhh-hccccceeeeeeccC--ceEEEEecCCceEEEEEccch----------hhhhhhhccccceeEEEEec-CccEEE
Confidence 3344 689999999999999 688999999999999999984 44788999999999999998 679999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd 244 (763)
+++.|=.+++||..+... .+....+|...|.+++|-|. ++++++++.|.+|++|+
T Consensus 167 tcSsDl~~~LWd~~~~~~------------------------c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFR------------------------CIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE 221 (406)
T ss_pred ecCCccchhheeHHHHHH------------------------HHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence 999999999999887432 23334467778999999997 69999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCC
Q 004290 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 324 (763)
+.++-.+. +| .+|.. +|..++...||..+++++.|.+|++|-+.++........+.+++
T Consensus 222 ~~tg~cv~-------------t~-------~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 222 CDTGYCVK-------------TF-------PGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred cccceeEE-------------ec-------cCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 99985444 33 44555 79999999999999999999999999999976666777777788
Q ss_pred eeeeeccC
Q 004290 325 KIMSFTPT 332 (763)
Q Consensus 325 ~~~~~~p~ 332 (763)
..++|.|.
T Consensus 281 Eci~wap~ 288 (406)
T KOG0295|consen 281 ECIAWAPE 288 (406)
T ss_pred EEEEeccc
Confidence 88887773
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-31 Score=279.28 Aligned_cols=225 Identities=18% Similarity=0.270 Sum_probs=183.2
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
.|+..+..|..++|+|...+++++-..|.|++||.+-+.++..| ..|.++|..++|+|. ..+|+||+.|.+|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence 45566788999999999999999999999999999999999999 799999999999999 799999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
.+ .+++.++.+|.+.|+.+.|++.- -+|+|+|.|.+|+||+..+.++
T Consensus 81 k~----------rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~---------------------- 127 (1202)
T KOG0292|consen 81 KT----------RRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC---------------------- 127 (1202)
T ss_pred cc----------ceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----------------------
Confidence 87 35689999999999999999944 5788999999999999988763
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC----CCCCCC-cccccc----cccccCC
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----RMSPPP-CVNYFC----PMHLSEH 275 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~----~~~~~~-~~~~~~----~~~~~~~ 275 (763)
+....+|.-.|+|.+|+|. ..+++++|-|.+|||||+...+.....+. ...... ....|. .......
T Consensus 128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 3334478889999999997 57999999999999999876543322221 000000 000110 0111225
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
||.. .|+-++|+|.-..|++|+.|..|++|.++.
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence 7877 499999999999999999999999998876
No 41
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.1e-31 Score=281.57 Aligned_cols=210 Identities=22% Similarity=0.348 Sum_probs=191.3
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
...++|-||.++|..+.|+|+.++|+++|+|++||+|.+.+..++..+ .||..+|+++.|+|. |.+|||++.|++.+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCceee
Confidence 445679999999999999999999999999999999999999999888 799999999999999 89999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
+|.... ..|++.+.+|-..|.|+.|+| +..+++|||.|.+|++||+.++..
T Consensus 519 LWs~d~----------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~------------------ 569 (707)
T KOG0263|consen 519 LWSTDH----------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS------------------ 569 (707)
T ss_pred eeeccc----------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE------------------
Confidence 999987 367999999999999999999 779999999999999999998862
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
+..+.+|..+|.+++|+|+ |.+|++|+.|+.|.+||+.++..+..+ .+|.+
T Consensus 570 -------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht~- 620 (707)
T KOG0263|consen 570 -------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHTG- 620 (707)
T ss_pred -------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hcccC-
Confidence 2333579999999999996 899999999999999999998766544 55744
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|.+|.||.+|..|++++.|++|++||+...
T Consensus 621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 621 TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 6999999999999999999999999999874
No 42
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=242.71 Aligned_cols=215 Identities=21% Similarity=0.351 Sum_probs=176.5
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-----------------C-eEEEEEccCCCCceEEEEEeeCC
Q 004290 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-----------------R-KLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-----------------~-~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
..+..|++++++.+|+|||.++|+|+.|..|+|.|++. + -.++++ ..|...|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR- 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch-
Confidence 45778999999999999999999999999999999872 1 245666 689999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
..+|++|+.|++|++||+...... +..+.+ ....+|.+|.|+| ++.+++.|....++++||+.+.++-
T Consensus 184 -e~ILiS~srD~tvKlFDfsK~saK-------rA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcf-- 251 (430)
T KOG0640|consen 184 -ETILISGSRDNTVKLFDFSKTSAK-------RAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCF-- 251 (430)
T ss_pred -hheEEeccCCCeEEEEecccHHHH-------HHHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEe--
Confidence 699999999999999999864321 112223 3456899999999 7789999999999999999987632
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
... .-..+|+..|+++.+++. +++.++++.||.|++||--+.+ |++
T Consensus 252 ------------vsa--------nPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r-------------Cv~ 297 (430)
T KOG0640|consen 252 ------------VSA--------NPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR-------------CVR 297 (430)
T ss_pred ------------eec--------CcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH-------------HHH
Confidence 111 112358899999999997 7899999999999999987764 444
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
++. ..|.+..|.+..|..+|+||++++.|..+++|.+.++.
T Consensus 298 t~~------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 298 TIG------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHH------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 432 33555579999999999999999999999999999964
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7e-31 Score=246.34 Aligned_cols=205 Identities=23% Similarity=0.459 Sum_probs=171.5
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-------cCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-------~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
|.+..+.|..|||||++|++|+.||-|.+||..+|+..+.+. --+..+|.|+.|+.+ ...|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEE
Confidence 456778999999999999999999999999999987654331 257789999999999 59999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+|.+.++ .+++.|. +|...|+|+.|+.++ ..+++++.|.++++.-+.+++.
T Consensus 289 vWri~tG----------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~----------------- 340 (508)
T KOG0275|consen 289 VWRIETG----------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC----------------- 340 (508)
T ss_pred EEEEecc----------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh-----------------
Confidence 9999984 3467775 899999999999955 6667999999999999998873
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
+..+.+|...|+...|.++ |..+++++.||+|++|+..+.. |+.+|.+.. ..
T Consensus 341 --------LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d 392 (508)
T KOG0275|consen 341 --------LKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD 392 (508)
T ss_pred --------HHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence 4566789999999999997 7899999999999999999864 555554433 22
Q ss_pred cceeEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290 280 LHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 280 ~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~ 310 (763)
.+|++|..-|. -..++++...++|+|.++..
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 36999988885 46788888899999998766
No 44
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3e-31 Score=257.34 Aligned_cols=205 Identities=20% Similarity=0.297 Sum_probs=167.6
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++ .+..++|++++|.++ +..+++++.|+.+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNL 243 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCce
Confidence 445678899999999999998999999999999999998766 55566 688899999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++|++... ....++.+|.+.|+++.|.. +...+++|+.|.+|+.||+....+......
T Consensus 244 r~Wnvd~~----------r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----------- 301 (459)
T KOG0288|consen 244 RLWNVDSL----------RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP----------- 301 (459)
T ss_pred eeeeccch----------hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-----------
Confidence 99999973 44788999999999999987 434488999999999999998653211111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
...++.|+.++ ..+++|-.|+.||+||.++.....+.+ .+
T Consensus 302 ---------------~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~--------------------~g-- 341 (459)
T KOG0288|consen 302 ---------------GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVP--------------------LG-- 341 (459)
T ss_pred ---------------cccccceEecc---eeeeecccccceEEEeccCCceeeEee--------------------cC--
Confidence 12344555543 478999999999999999876554331 11
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+.|++|..+++|..|++++.|.++.+.|+++.
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 15999999999999999999999999999984
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=275.04 Aligned_cols=215 Identities=20% Similarity=0.332 Sum_probs=170.8
Q ss_pred ccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--------------------------------C-----
Q 004290 41 SQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R----- 82 (763)
Q Consensus 41 ~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--------------------------------~----- 82 (763)
...+++. +|++.|.++.||+||+|||+||+|+.|+||.+.. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4445667 8999999999999999999999999999998654 0
Q ss_pred -----------------------eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290 83 -----------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 83 -----------------------~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
+.++.+ .||.+.|.++.|+.+ ++|++++.|++||+|++... .+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~----------~C 402 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK----------EC 402 (712)
T ss_pred cccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc----------ce
Confidence 011112 699999999999987 79999999999999999962 55
Q ss_pred ceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290 140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (763)
Q Consensus 140 ~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (763)
+..|. |.+.|+||+|+|.+.++|++|+-||.|+||++...+ ...|. .-..-|+
T Consensus 403 L~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-------------Vv~W~-------------Dl~~lIT 455 (712)
T KOG0283|consen 403 LKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-------------VVDWN-------------DLRDLIT 455 (712)
T ss_pred eeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-------------eEeeh-------------hhhhhhe
Confidence 77775 999999999999999999999999999999998765 12221 1235799
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEe
Q 004290 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSY 298 (763)
Q Consensus 220 ~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s 298 (763)
+++|.|+ |+..++|+.+|.+++|+.+..+......-.....+ . ..+. .||++.|.|.. ..|++.+
T Consensus 456 Avcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K----------k-~~~~--rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 456 AVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK----------K-KQGK--RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred eEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc----------c-ccCc--eeeeeEecCCCCCeEEEec
Confidence 9999998 89999999999999999998765433321111110 0 1122 59999999843 4689999
Q ss_pred CCCeEEEEECCC
Q 004290 299 SGEHVYLMDVNH 310 (763)
Q Consensus 299 ~d~~i~iwd~~~ 310 (763)
.|..|+|||.+.
T Consensus 522 nDSrIRI~d~~~ 533 (712)
T KOG0283|consen 522 NDSRIRIYDGRD 533 (712)
T ss_pred CCCceEEEeccc
Confidence 999999999876
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-30 Score=234.87 Aligned_cols=202 Identities=17% Similarity=0.244 Sum_probs=158.8
Q ss_pred EEEEeCC-CCCEEEEE-------eCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 54 NAISWNS-KGSLLISG-------SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 54 ~~l~fsp-~g~~Lasg-------s~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
.++.||| -.++||.+ ...|++.|.++...+-+..+. ..-...++.++|+++. .+.+++++.||+++|||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEecc
Confidence 5788999 23334433 236889999986444333331 1345789999999987 889999999999999997
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
..+. .|+..++.|...|.++.|++.....+++++.|++||+||...++
T Consensus 91 ~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----------------------- 138 (311)
T KOG0277|consen 91 TMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----------------------- 138 (311)
T ss_pred CCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-----------------------
Confidence 6543 57999999999999999999888899999999999999987664
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
.+.++.+|..-|...+|+|..+++|++++.|+++++||++.......+ ..|.. .|.+
T Consensus 139 --Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i--------------------~ah~~-Eil~ 195 (311)
T KOG0277|consen 139 --SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI--------------------EAHNS-EILC 195 (311)
T ss_pred --ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE--------------------Eeccc-eeEe
Confidence 344466788999999999999999999999999999999853211111 22432 5999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004290 285 VTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~sp-dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+.|+. +.+.|++|+.|+.|++||+++-
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhc
Confidence 99997 5567788888999999999883
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.2e-28 Score=253.85 Aligned_cols=383 Identities=14% Similarity=0.147 Sum_probs=276.5
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC
Q 004290 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 106 (763)
-+++.+++ .++.+-...--.+...|.+++.||+|.+|++..+.|.+.+-++.....++.+ ....+|.|+.|+|+
T Consensus 34 GNrvsv~d--LknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f--~fk~~v~~i~fSPn-- 107 (893)
T KOG0291|consen 34 GNRVSVFD--LKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF--NFKRGVGAIKFSPN-- 107 (893)
T ss_pred CCEEEEEE--ccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE--eecCccceEEECCC--
Confidence 45555655 2332222222246788999999999999999999999999999988888877 45688999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
|.++|.|. .+.+.||........ ..+.....+.+.+|...|.+|.|+. +.++|++|+.|-++++|+++..+..
T Consensus 108 g~~fav~~-gn~lqiw~~P~~~~~--~~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~--- 180 (893)
T KOG0291|consen 108 GKFFAVGC-GNLLQIWHAPGEIKN--EFNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNL--- 180 (893)
T ss_pred CcEEEEEe-cceeEEEecCcchhc--ccCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEecccccc---
Confidence 78888776 478999988743221 1222334567789999999999998 7799999999999999999887632
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC----------C
Q 004290 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ----------K 256 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~----------~ 256 (763)
......+|...|.++-|..+ ...+++.+.||.+.+|-.........-. .
T Consensus 181 --------------------~~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~ 239 (893)
T KOG0291|consen 181 --------------------FTYALNGHKDYVVACFFGAN-SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE 239 (893)
T ss_pred --------------------ceEeccCCCcceEEEEeccC-cceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence 12233468899999999987 5789999999999999876321100000 0
Q ss_pred CCCCCCc-----ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 257 RMSPPPC-----VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 257 ~~~~~~~-----~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
...+.+. .......|... .....|++.+|++....|+++-..|...+|++..........-....+..++|+.
T Consensus 240 ~~~~~Eek~~~~~~~k~~k~~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~ 317 (893)
T KOG0291|consen 240 MDEDGEEKTHKIFWYKTKKHYLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS 317 (893)
T ss_pred ccccchhhhcceEEEEEEeeeec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc
Confidence 0000000 00111112111 1113599999999999999999999999999988543332222334444444443
Q ss_pred CCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHH
Q 004290 332 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRA 411 (763)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (763)
.+.-+++.+..
T Consensus 318 tGDWiA~g~~k--------------------------------------------------------------------- 328 (893)
T KOG0291|consen 318 TGDWIAFGCSK--------------------------------------------------------------------- 328 (893)
T ss_pred cCCEEEEcCCc---------------------------------------------------------------------
Confidence 32222111110
Q ss_pred HHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004290 412 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 491 (763)
Q Consensus 412 ~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 491 (763)
T Consensus 329 -------------------------------------------------------------------------------- 328 (893)
T KOG0291|consen 329 -------------------------------------------------------------------------------- 328 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccccCC
Q 004290 492 ETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 571 (763)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 571 (763)
T Consensus 329 -------------------------------------------------------------------------------- 328 (893)
T KOG0291|consen 329 -------------------------------------------------------------------------------- 328 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeccCCCccccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeecccCCCCEEEEecCCCcE
Q 004290 572 LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRW 651 (763)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i 651 (763)
.++..+|....-.++.+-.||.+.++++. +||||++||+|++||.|
T Consensus 329 ------------------------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~----YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 329 ------------------------------LGQLLVWEWQSESYVLKQQGHSDRITSLA----YSPDGQLIATGAEDGKV 374 (893)
T ss_pred ------------------------------cceEEEEEeeccceeeeccccccceeeEE----ECCCCcEEEeccCCCcE
Confidence 11111222223336667789999999988 99999999999999999
Q ss_pred EEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290 652 FIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 652 ~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
+|||..+|-|+-++.-|++.|++++|+..++.|+|+|.||+||.||+....+.++|.
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 999999999999999999999999999999999999999999999999998888875
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=6.9e-31 Score=254.32 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=132.1
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004290 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
.-..+|..+.|.|+ |+.|++|+..|.+.+|+... ......+.+|..+|++|.|++ ++.+++||..+|
T Consensus 94 Kvkc~V~~v~WtPe--GRRLltgs~SGEFtLWNg~~----------fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG 160 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPE--GRRLLTGSQSGEFTLWNGTS----------FNFETILQAHDSPVRTMKWSH-NGTWMISGDKGG 160 (464)
T ss_pred ccccceeeEEEcCC--CceeEeecccccEEEecCce----------eeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCc
Confidence 34568999999999 89999999999999999865 233445678999999999999 779999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC-CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
.|++|+..... +... ..|...|++++|+|. ...|++++.||+|+|||.+..+
T Consensus 161 ~iKyWqpnmnn--------------------------Vk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 161 MIKYWQPNMNN--------------------------VKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred eEEecccchhh--------------------------hHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCc
Confidence 99999976543 1111 234588999999996 5799999999999999999765
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.-..+ .||.- .|.+++|+|.-..|++++.|+.|++||.+++
T Consensus 214 ee~vL--------------------~GHgw-dVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 214 EERVL--------------------RGHGW-DVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhee--------------------ccCCC-CcceeccCCccceeEEccCCceeEeecCCCc
Confidence 33222 44544 4999999999999999999999999999985
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=227.75 Aligned_cols=206 Identities=19% Similarity=0.336 Sum_probs=167.4
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
+++++|.+.|.+|+|+.+|..||+|+.|+++.+|+++..+..... ..+|.+.|-.++|+|.+ .++|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 778899999999999999999999999999999999887544332 26899999999999986 7899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
|++.+ ++......- +.-.-+.|+| ++.+++.++.|..|...|.++.+..
T Consensus 93 d~r~~----------k~~~~i~~~-~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~------------------- 141 (313)
T KOG1407|consen 93 DIRSG----------KCTARIETK-GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIV------------------- 141 (313)
T ss_pred EeccC----------cEEEEeecc-CcceEEEEcC-CCCEEEEecCcccEEEEEeccccee-------------------
Confidence 99974 334444433 3334578999 6689999999999999999987632
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004290 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i 282 (763)
........++-++|+-+ +++|+....-|.|.|......+++.++ ..|.. ..
T Consensus 142 -------~~~~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si--------------------~AH~s-nC 192 (313)
T KOG1407|consen 142 -------NEEQFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSI--------------------KAHPS-NC 192 (313)
T ss_pred -------ehhcccceeeeeeecCC-CCEEEEecCCceEEEEecccccccccc--------------------ccCCc-ce
Confidence 11123456788899854 578887777899999998887766554 34554 48
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 283 THVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+|.|+|+|+|+++|+.|..+.+||+..
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhH
Confidence 8899999999999999999999999876
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.5e-29 Score=234.54 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=137.2
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.+|++.|+.+.|+|+ |.+|+||+.|..|.+|++... + +-..++++|++.|..+.|.+ +++.+++++.|
T Consensus 44 ~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~gd---c------eN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtD 111 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYGD---C------ENFWVLKGHSGAVMELHGMR-DGSHILSCGTD 111 (338)
T ss_pred CCCcceEEEEEECCC--CCeEeecCCcceEEEEecccc---c------cceeeeccccceeEeeeecc-CCCEEEEecCC
Confidence 699999999999998 899999999999999997631 1 23567889999999999999 66889999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
++|+.||+++++. +..+..|...|++++-+..+..++.+|+.|+++++||+|+..
T Consensus 112 k~v~~wD~~tG~~-------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 112 KTVRGWDAETGKR-------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ceEEEEeccccee-------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 9999999999873 333456777888888655567789999999999999999876
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+.++. ...+++++.|..++..+++|+-|+.|++||++.
T Consensus 167 ~~~t~~----------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 167 AIKTFE----------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hhhccc----------------------cceeEEEEEecccccceeeccccCceeeecccc
Confidence 554431 122599999999999999999999999999987
No 51
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=245.83 Aligned_cols=202 Identities=17% Similarity=0.246 Sum_probs=164.9
Q ss_pred cceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 42 QERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
.+..|.||.++|.|++=+|.. ..+|||+.||.|+|||+.+..++.++ ..|.+.|..+++.. ..+++++.|++|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~----~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ----TSFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc----cceEEecCCccee
Confidence 456679999999999999977 78999999999999999999999999 89999999999986 4789999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
.|.+.- .++.++.+ ...+..|.-+. ....|+|||+ .|-|||.....++
T Consensus 133 ~wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv----------------- 180 (433)
T KOG0268|consen 133 QWKIDG-----------PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPV----------------- 180 (433)
T ss_pred eeeccC-----------Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCcc-----------------
Confidence 999884 34666653 44566676665 4578989886 6999998766533
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
....-....|.++.|+|....+|+++.+|+.|.+||+|..+++..+...+
T Consensus 181 --------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---------------------- 230 (433)
T KOG0268|consen 181 --------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---------------------- 230 (433)
T ss_pred --------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec----------------------
Confidence 11122356789999999888899999999999999999998776543211
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.-+.++|+|.+-.+++++.|..++.||++.
T Consensus 231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 231 RTNTICWNPEAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred cccceecCccccceeeccccccceehhhhh
Confidence 357799999887788888999999999887
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2e-30 Score=245.58 Aligned_cols=218 Identities=18% Similarity=0.300 Sum_probs=187.7
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
+.-+++|++|+ .....+.+.|.||++.|.|+.|. .+.|++|+.|.+|+|||+++|+++.++ .+|...|..+.|+.
T Consensus 213 GlrDnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n 287 (499)
T KOG0281|consen 213 GLRDNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN 287 (499)
T ss_pred ccccCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC
Confidence 34578999999 77888999999999999999985 569999999999999999999999998 79999999999984
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
.++++++.|.+|.+||+..+.. ..+.+.+.+|...|+.+.|+. +++++++.|.+|++|++.+.+.
T Consensus 288 ----g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef- 352 (499)
T KOG0281|consen 288 ----GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF- 352 (499)
T ss_pred ----CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee-
Confidence 5999999999999999997542 244678899999999999953 6999999999999999998763
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
+....+|...|.|+.+. +.++++|++|.+||+||+..|..+..+
T Consensus 353 ------------------------vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvL--------- 396 (499)
T KOG0281|consen 353 ------------------------VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL--------- 396 (499)
T ss_pred ------------------------ehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHH---------
Confidence 33445677788888875 579999999999999999998655443
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.||.. -|.++.| |.+.+++|..||+|++||+..+
T Consensus 397 -----------eGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 397 -----------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -----------hchHH-hhhheee--cCceeeeccccceEEEEecccc
Confidence 56776 4999999 5578999999999999999985
No 53
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=3.2e-29 Score=257.98 Aligned_cols=442 Identities=17% Similarity=0.169 Sum_probs=294.0
Q ss_pred CCcccccccccchhhhhccccceeeccccCceEEEEeCCCC---CEEEEEeCCCcEEEEeCCCCe---------------
Q 004290 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRK--------------- 83 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g---~~Lasgs~D~~v~iWd~~~~~--------------- 83 (763)
.....+..+.++.....+++.+.+|+||.+.|.+|+|...+ -+|||+|+|..||||.+.-+.
T Consensus 163 a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~ 242 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLS 242 (764)
T ss_pred EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccccc
Confidence 34566778888887788899999999999999999998744 489999999999999864221
Q ss_pred ---------EEE------EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 84 ---------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 84 ---------~~~------~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
.+. .+..||...|.++.|+|. +..|++++.|.++.+|......+...+. -.+..+.+...
T Consensus 243 ~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~---vRlGe~gg~a~ 317 (764)
T KOG1063|consen 243 NLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDV---VRLGEVGGSAG 317 (764)
T ss_pred CCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEE---EEeeccccccc
Confidence 111 223599999999999999 7899999999999999988754422100 01222334455
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 228 (763)
.-....|+| +++.+++-+.-|..++|-..... +|. ......+|...|++++|+|. |
T Consensus 318 GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~---------------~w~-------~~~~iSGH~~~V~dv~W~ps-G 373 (764)
T KOG1063|consen 318 GFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKT---------------FWT-------QEPVISGHVDGVKDVDWDPS-G 373 (764)
T ss_pred ceeeEEEcC-CCCEEEEecccCcEEEEeccCcc---------------cee-------eccccccccccceeeeecCC-C
Confidence 678889999 66888899999999999833322 111 12233478899999999997 7
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCC--cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290 229 HLLLVGGSDAFARLYDRRMLPPL--TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (763)
Q Consensus 229 ~~l~sgs~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iw 306 (763)
.+|++.+.|.+-|+|-.- ++.. ..+..+ ..+|| .++|++|-+....+++|.....+++|
T Consensus 374 eflLsvs~DQTTRlFa~w-g~q~~wHEiaRP---------------QiHGy---Dl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 374 EFLLSVSLDQTTRLFARW-GRQQEWHEIARP---------------QIHGY---DLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred CEEEEeccccceeeeccc-ccccceeeeccc---------------ccccc---cceeeehccCCceeeecccceeeeee
Confidence 899999999999999665 2211 111100 00333 49999999865557777778888999
Q ss_pred ECCCCCccceEeecCCCCeeeeeccCCCCcccCCCCCcccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHH
Q 004290 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEA 386 (763)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 386 (763)
+....-. ..
T Consensus 435 ~aPk~fv--------------------------------------------------~~--------------------- 443 (764)
T KOG1063|consen 435 EAPKSFV--------------------------------------------------KS--------------------- 443 (764)
T ss_pred cCcHHHH--------------------------------------------------HH---------------------
Confidence 7654210 00
Q ss_pred hHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHH
Q 004290 387 CNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA 466 (763)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 466 (763)
+..+-.....+ ..
T Consensus 444 l~~i~g~~~~~--~~----------------------------------------------------------------- 456 (764)
T KOG1063|consen 444 LMAICGKCFKG--SD----------------------------------------------------------------- 456 (764)
T ss_pred HHHHhCccccC--ch-----------------------------------------------------------------
Confidence 00000000000 00
Q ss_pred HhccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhh
Q 004290 467 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEE 546 (763)
Q Consensus 467 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 546 (763)
..|+ ...-+.+.|++...-...+. ++ .+.....|
T Consensus 457 ---~~p~----------------------------------gA~VpaLGLSnKa~~~~e~~----~G-----~~~~~~~e 490 (764)
T KOG1063|consen 457 ---ELPD----------------------------------GANVPALGLSNKAFFPGETN----TG-----GEAAVCAE 490 (764)
T ss_pred ---hccc----------------------------------ccccccccccCCCCcccccc----cc-----cccceeee
Confidence 0000 01111122222111110000 00 00000011
Q ss_pred hhccccCCCCCCCCcccccccccCCcceeeeccCCCccccccCCCC-CCCCCC------CCCCCCCCCCcccccccceEE
Q 004290 547 VEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGS-SGSPSS------SSQNDRIPYQPETVIDMKQRY 619 (763)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 619 (763)
...........+ +..+...+.-.|+..++|-+..+.+-.+...+ .+...+ ..++..+++|....+..++.+
T Consensus 491 -t~~~~~p~~L~e-PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L 568 (764)
T KOG1063|consen 491 -TPLAAAPCELTE-PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL 568 (764)
T ss_pred -cccccCchhccC-CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence 111122223334 34445555667777788888777666544422 232222 236778888999999999999
Q ss_pred eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcE----EEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEE
Q 004290 620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRL----IKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKI 695 (763)
Q Consensus 620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~----~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~Irv 695 (763)
.+|...||.++ |||||+||+|.|.|+++.+|..+.... ...++.|++.|+++.|+|+..+|||+|.|.+|+|
T Consensus 569 ~~HsLTVT~l~----FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 569 EGHSLTVTRLA----FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred cccceEEEEEE----ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 99999999999 999999999999999999999874432 3458899999999999999999999999999999
Q ss_pred EcCCCC
Q 004290 696 WTPSAS 701 (763)
Q Consensus 696 W~~~~~ 701 (763)
|.....
T Consensus 645 W~~~~~ 650 (764)
T KOG1063|consen 645 WEEPDL 650 (764)
T ss_pred EeccCc
Confidence 999888
No 54
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=258.18 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=91.3
Q ss_pred CCCCCCCCCCcccccccceEEeeeccc-ccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEe
Q 004290 599 SSQNDRIPYQPETVIDMKQRYVGHCNV-GTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC 677 (763)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~gh~~~-~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~ 677 (763)
.|....+.+......+.++.|+|-.+. ++.|+.. ..|.|-|||+...|+++.++|.-+|+++.++.||.+.|++|.|
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~--lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI--LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEE--ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence 467777788888889999999985555 5656655 7999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEeCCCcEEEEcCCCCCC
Q 004290 678 HPFDCVVATSGIDNTIKIWTPSASVP 703 (763)
Q Consensus 678 sp~~~~laS~s~D~~IrvW~~~~~~~ 703 (763)
.+|.++|+|++.||.|.||.+.....
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred cccchhheeecCCceEEEEECchhHh
Confidence 99999999999999999999876443
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-29 Score=254.15 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=212.1
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
++..+.||.. ++...++.++--.-+|++..|-+-.+++++|+.|..|+||+..+++.++.| ..|..-|.|++.+|.
T Consensus 33 ynG~V~IWny--etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt- 108 (794)
T KOG0276|consen 33 YNGDVQIWNY--ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT- 108 (794)
T ss_pred ecCeeEEEec--ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence 5688999984 445567888878889999999999999999999999999999999999999 899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
..+++|+|.|-+|++||.+.. +.+.+++.+|...|.+++|+|.+.+.|+|++-|++|++|.+.++.+
T Consensus 109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--- 175 (794)
T KOG0276|consen 109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--- 175 (794)
T ss_pred -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC---
Confidence 699999999999999999852 5678999999999999999999999999999999999999987652
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (763)
..+..+|...|+|+.|-+.+ .-+|++|+.|.+|+|||.++.+++.++
T Consensus 176 ----------------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL---------- 223 (794)
T KOG0276|consen 176 ----------------------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL---------- 223 (794)
T ss_pred ----------------------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh----------
Confidence 33445788899999998842 139999999999999999987544433
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (763)
Q Consensus 265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 336 (763)
.||.+ .|..+.|+|.-..+++|+.||+++||+..+-+.........+.+..++..+....+
T Consensus 224 ----------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i 284 (794)
T KOG0276|consen 224 ----------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKI 284 (794)
T ss_pred ----------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeE
Confidence 66777 59999999999999999999999999998855444444444555666655554443
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=261.33 Aligned_cols=200 Identities=22% Similarity=0.335 Sum_probs=170.1
Q ss_pred eeecc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290 44 RELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 44 ~~l~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
+.+.+ |...|.+..|. ..++++++.|.+|++||..++..+.. + .||.+.|.+++|... +.+|++|+.|.++++
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERV 275 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEe
Confidence 34444 56778888888 66799999999999999999999888 6 899999999999985 789999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
||..++ .+..++.+|.+.|.+|...+ .++++|+.|.+|++|++.++...
T Consensus 276 Wd~~sg----------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l------------------ 324 (537)
T KOG0274|consen 276 WDCSTG----------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL------------------ 324 (537)
T ss_pred EecCCC----------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceE------------------
Confidence 998873 45899999999999999854 68889999999999999977522
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
....+|..+|+++..+ +.++++|+.|++|++||+.+++.+.++ .||.. .
T Consensus 325 -------~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~ 373 (537)
T KOG0274|consen 325 -------NLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-R 373 (537)
T ss_pred -------EEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-e
Confidence 2223478999999998 359999999999999999988765544 56766 6
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|.++.+.+. ..+++|+.|+.|++||+.+.
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCch
Confidence 999988776 78999999999999999883
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=7.5e-29 Score=236.06 Aligned_cols=163 Identities=20% Similarity=0.314 Sum_probs=143.7
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.+|.+.|.|+++.|. +..|++|+.|++|+|||+.++ ....++.+|...|..+++++.. -|+++++.|
T Consensus 148 ~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg----------~LkltltGhi~~vr~vavS~rH-pYlFs~ged 214 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATG----------QLKLTLTGHIETVRGVAVSKRH-PYLFSAGED 214 (460)
T ss_pred hhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccC----------eEEEeecchhheeeeeeecccC-ceEEEecCC
Confidence 799999999999999 799999999999999999984 3467788999999999999954 577799999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
+.|++||+...+ .+....+|...|.|++.+|. -+.|++|+.|.++|+||+|+..
T Consensus 215 k~VKCwDLe~nk-------------------------vIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 215 KQVKCWDLEYNK-------------------------VIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred CeeEEEechhhh-------------------------hHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccc
Confidence 999999999876 34455678899999999997 5799999999999999999876
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+..+ .||.. +|..|.+.|-...+++|+.|++|++||+..++
T Consensus 269 ~V~~l--------------------~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 269 SVHVL--------------------SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred eEEEe--------------------cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 55443 56777 69999999988889999999999999998864
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.1e-28 Score=262.57 Aligned_cols=165 Identities=22% Similarity=0.371 Sum_probs=139.2
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..+...|.++.|+|+ |..+++++.|+.+++|+...... .....+.+|...|.+++|+| ++.++++++.|
T Consensus 156 ~~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D 224 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDD 224 (456)
T ss_pred ccccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECC-CCcEEEEecCC
Confidence 344789999999999 78999999999999999954221 13566689999999999999 66899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
++|++||+.... ..+....+|...|++++|+|+ ++++++|+.|++|||||+++++
T Consensus 225 ~tiriwd~~~~~------------------------~~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 225 KTLRIWDLKDDG------------------------RNLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ceEEEeeccCCC------------------------eEEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCe
Confidence 999999994442 123344578999999999998 4999999999999999999976
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....+ .+|.+ .|++++|++++.+|++++.|+.|++||+.++
T Consensus 280 ~~~~l--------------------~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 280 CVRKL--------------------KGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred EEEee--------------------eccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 54443 45666 6999999999999999999999999999985
No 59
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=206.68 Aligned_cols=223 Identities=17% Similarity=0.310 Sum_probs=162.7
Q ss_pred ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC------C--------eEEEEEccCCCCceEEEEEeeC
Q 004290 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------R--------KLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~------~--------~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
.+..+.+|. ....|.+++|+|.|.+.|.|+..++.+|--... + ..+.+-...|.+.|.|.+|+|.
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 345566665 567899999999999999999999999875421 1 1223333578999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCCEEEEEeC-CCcEEEEECCCC
Q 004290 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASE-DGTLRQHDFRQG 180 (763)
Q Consensus 105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~~l~s~s~-dg~i~iwd~~~~ 180 (763)
|.+|++|+.|++|++..++...... ..+-..+.-|.+.|..|+|-.+ ++.++++++. |..|++-|...+
T Consensus 101 --geliatgsndk~ik~l~fn~dt~~~-----~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 101 --GELIATGSNDKTIKVLPFNADTCNA-----TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred --cCeEEecCCCceEEEEecccccccc-----cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 8999999999999998887543322 1334567789999999999642 3457777664 666777777666
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE-EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
+.. .-..+|++-|.++ .|+ +-+|++|+.|.+||+||+|-...+.++...
T Consensus 174 ~~~-------------------------~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~-- 223 (350)
T KOG0641|consen 174 QGF-------------------------HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND-- 223 (350)
T ss_pred Ccc-------------------------eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--
Confidence 522 2223455555554 343 569999999999999999976544433211
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+...|.....|.+|+..|.|++|++|..|....+||++.+
T Consensus 224 ------------~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 224 ------------FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred ------------ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 1223344457999999999999999999999999999874
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.3e-28 Score=242.14 Aligned_cols=232 Identities=16% Similarity=0.239 Sum_probs=173.5
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
....|++|+..|.++++.|.|-.|+||+.|.+|++||+.... ..+.+.......|.++.|++. +..|++.+...
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCc
Confidence 345578999999999999999999999999999999997542 334444455668999999998 67787777788
Q ss_pred cEEEEECCCCCCCCC--CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 118 EVRLFNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
.++|+|-.-...... ....+.-+..-++|...++|.+|+|.+...|+|++.||++++||+...+.. .
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-----------~ 305 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-----------L 305 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-----------e
Confidence 999999763211000 000112234557899999999999999999999999999999999887632 1
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
.++..+ ...+....+++|+|+|+ +.+||+|+.||.|.+|+.+....... +....
T Consensus 306 qVik~k--------~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~-----------------~~vk~ 359 (641)
T KOG0772|consen 306 QVIKTK--------PAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPV-----------------MKVKD 359 (641)
T ss_pred eEEeec--------cCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccc-----------------eEeee
Confidence 111111 11244678899999998 78999999999999999875432211 11111
Q ss_pred CCCc-cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 276 GRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 276 g~~~-~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.|.. ..|++|.||+||++|++-+.|+++++||++..+
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 2222 249999999999999999999999999999864
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.4e-27 Score=277.20 Aligned_cols=188 Identities=15% Similarity=0.242 Sum_probs=142.7
Q ss_pred CCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc
Q 004290 71 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (763)
Q Consensus 71 D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h 146 (763)
+|.+++|+..+......+. ..|...|.+++|+|+ +++|++|+.|+.|+||++........ ....+...+. +
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence 6788999988765544332 348999999999999 79999999999999999864210000 0011223333 4
Q ss_pred cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 147 ~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
...|.+++|+|..+.+|++++.||+|++||+.+++. +....+|...|++++|+|.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------------------~~~~~~H~~~V~~l~~~p~ 586 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------------------VTEMKEHEKRVWSIDYSSA 586 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-------------------------EEEecCCCCCEEEEEEcCC
Confidence 567999999987778999999999999999987642 1222457788999999986
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEE
Q 004290 227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL 305 (763)
Q Consensus 227 ~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~i 305 (763)
++.+|++|+.|+.|++||++++..+..+ ..+. .|.++.|+ ++|.+|++|+.|+.|++
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------~~~~--~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTI--------------------KTKA--NICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------ecCC--CeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 5789999999999999999976543222 1121 48999995 57999999999999999
Q ss_pred EECCC
Q 004290 306 MDVNH 310 (763)
Q Consensus 306 wd~~~ 310 (763)
||+.+
T Consensus 645 wD~~~ 649 (793)
T PLN00181 645 YDLRN 649 (793)
T ss_pred EECCC
Confidence 99876
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=218.14 Aligned_cols=228 Identities=16% Similarity=0.239 Sum_probs=186.0
Q ss_pred CCcccccccccchhh-hhccccceee-ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceE
Q 004290 22 TRPDVNHSLQMHSSL-VRRLSQEREL-EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVF 97 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~~~~~~~~l-~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~ 97 (763)
.+.+.++.+++|+.- ..++.+...| .+|+..|++++|+|.|++||+||.|.++.||.-..+ +++.++ .||...|.
T Consensus 31 Ascg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK 109 (312)
T KOG0645|consen 31 ASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVK 109 (312)
T ss_pred EeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-ecccccee
Confidence 356778999999865 4456777666 479999999999999999999999999999986644 577788 89999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
|++|+++ |.+||+|+.|+.|-||.+.... .+++...+..|...|..+.|+| ...+|+|++.|.+|++|+-
T Consensus 110 ~Vaws~s--G~~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 110 CVAWSAS--GNYLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred EEEEcCC--CCEEEEeeCCCeEEEEEecCCC-------cEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEee
Confidence 9999999 8999999999999999998532 2577899999999999999999 5689999999999999986
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
.... .-..+....+|...|.+++|+|. |+.|++++.|++++||-..+.-.
T Consensus 180 ~~dd----------------------dW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~~------- 229 (312)
T KOG0645|consen 180 EDDD----------------------DWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDLS------- 229 (312)
T ss_pred cCCC----------------------CeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCcc-------
Confidence 5321 01122334467778999999997 68999999999999998663210
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
..|.. .+..+.|. + ..|++++.|+.|++|.-..
T Consensus 230 -----------------~~~sr-~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 230 -----------------GMHSR-ALYDVPWD-N-GVIASGGGDDAIRLFKESD 262 (312)
T ss_pred -----------------hhccc-ceEeeeec-c-cceEeccCCCEEEEEEecC
Confidence 11322 58889998 4 4699999999999996554
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-28 Score=258.04 Aligned_cols=161 Identities=12% Similarity=0.195 Sum_probs=140.8
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
...+..|-.++|+|. ...++++-..|.|++||.+.+ .++..|..|.++|+.++|+| .+-+|+|||.|
T Consensus 6 EskSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~----------tli~rFdeHdGpVRgv~FH~-~qplFVSGGDD 72 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMG----------TLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDD 72 (1202)
T ss_pred hcccccccceecCCC--CCEEEEeecCceeeeehhhhh----------hHHhhhhccCCccceeeecC-CCCeEEecCCc
Confidence 345678999999999 689999999999999999963 45888999999999999999 55799999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
-+|++|+..+.+ .+....+|...|..+.|++..+ +|+++|.|.+||||+..+.+
T Consensus 73 ykIkVWnYk~rr-------------------------clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 73 YKIKVWNYKTRR-------------------------CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred cEEEEEecccce-------------------------ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc
Confidence 999999988765 3455567899999999999854 99999999999999999886
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+..+ .||.. .|.|.+|+|....++++|-|.+|++||+..
T Consensus 127 ~iavl--------------------tGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 127 CIAVL--------------------TGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred eEEEE--------------------ecCce-EEEeeccCCccceEEEecccceEEEEeecc
Confidence 55443 56777 499999999999999999999999999977
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=228.01 Aligned_cols=251 Identities=16% Similarity=0.193 Sum_probs=193.6
Q ss_pred CCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEE
Q 004290 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (763)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~ 100 (763)
..+++-+..-.+|+ +.+.....++.||++.|+++.||.+|.+||||..+|.|+||+..++.....+ ......|.=+.
T Consensus 79 ~aTGGgDD~AflW~--~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~dieWl~ 155 (399)
T KOG0296|consen 79 VATGGGDDLAFLWD--ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDIEWLK 155 (399)
T ss_pred EEecCCCceEEEEE--ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCceEEEE
Confidence 34556667777887 6666789999999999999999999999999999999999999999988888 34556788899
Q ss_pred EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
|+|. +.+|+.|+.||.|.+|.+... ...+.+.+|..++++=.|.| +++.++++..||+|++||+.++
T Consensus 156 WHp~--a~illAG~~DGsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 156 WHPR--AHILLAGSTDGSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred eccc--ccEEEeecCCCcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCC
Confidence 9998 899999999999999999863 23678899999999999999 5788999999999999999998
Q ss_pred CCCCCCC--------------------CCCcccceEEEecCCCceeeccC------CCCCccceEEEE---EeCCCCcEE
Q 004290 181 SSCPPAG--------------------SSHQECRNILLDLRCGAKRSLAD------PPKQTLSLKSCD---ISSTRPHLL 231 (763)
Q Consensus 181 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~---~~p~~~~~l 231 (763)
++..... .+..++...+.....+++..... .+.+...+.|+. |+.. -.++
T Consensus 223 ~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~-lpL~ 301 (399)
T KOG0296|consen 223 QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK-LPLA 301 (399)
T ss_pred ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc-cchh
Confidence 7642211 11122333333333333322222 123333344444 4443 3478
Q ss_pred EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 232 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 232 ~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|+|+-||+|-|||+...+....+. |.. .|+.+.|-+ ..+|++++.+|.|++||.+++
T Consensus 302 A~G~vdG~i~iyD~a~~~~R~~c~---------------------he~-~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAASTLRHICE---------------------HED-GVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred hcccccceEEEEecccchhheecc---------------------CCC-ceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 999999999999999766443331 444 499999999 789999999999999999985
No 65
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-27 Score=236.13 Aligned_cols=249 Identities=18% Similarity=0.247 Sum_probs=213.0
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
++.++..+++|. ....++.+|..|+++|.+|.|+.+|++|++++.|+++.|||..+++....+ .-|..+-..+.|-
T Consensus 252 tG~~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 252 TGSEDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQ 327 (524)
T ss_pred EeecCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEe
Confidence 466788888887 567788899999999999999999999999999999999999999988888 6788887889998
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
.+ .-|++++.|+.|+++.+.. ..|..++.+|.++|.+|.|+| .+.+|+|++.|++++||......
T Consensus 328 ~~---~~F~ts~td~~i~V~kv~~----------~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~- 392 (524)
T KOG0273|consen 328 SN---DEFATSSTDGCIHVCKVGE----------DRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSN- 392 (524)
T ss_pred cC---ceEeecCCCceEEEEEecC----------CCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCc-
Confidence 76 7899999999999999986 367899999999999999999 66999999999999999977654
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--------CcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--------~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
.+..+..|...|+.+.|+|.+ +..+++++.|++|++||+..+.++.++
T Consensus 393 ------------------------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 393 ------------------------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred ------------------------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 233445677788888888863 458999999999999999999877655
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004290 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (763)
..|.. +|.+|+|+|+|+||++|+.||.|.+|++++++ ....+..+..+..++|+....
T Consensus 449 --------------------~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 449 --------------------MKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGD 506 (524)
T ss_pred --------------------ccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCC
Confidence 23444 69999999999999999999999999999954 566666677788899988765
Q ss_pred Cc
Q 004290 335 GL 336 (763)
Q Consensus 335 ~~ 336 (763)
.+
T Consensus 507 kl 508 (524)
T KOG0273|consen 507 KL 508 (524)
T ss_pred EE
Confidence 44
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=244.32 Aligned_cols=257 Identities=15% Similarity=0.198 Sum_probs=194.0
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
.+.++.+.. ++..+.+.+|+...+.|+.++|..||+ +||+|+..|.+-+||++..+.+..+...|.+.|....|.|.
T Consensus 222 ~~G~ViifN--lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 222 ENGTVIIFN--LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred cCceEEEEE--cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence 456666665 677788888885569999999999996 67788888999999999999888886789999999999998
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 004290 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (763)
Q Consensus 105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~ 184 (763)
...+++++.|+.+++|=..++++.. +.++.-.+|..+..+|.|.-..+..+.+++.|++.+.+++.....-.
T Consensus 300 --epVl~ta~~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 300 --EPVLVTAGADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred --CceEeeccCCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 6999999999999999888766643 45777789999999999997688999999999999999876532210
Q ss_pred CCCC------------C-----------------------------C-cccceEEEecCCCceeeccC----CCCCccce
Q 004290 185 PAGS------------S-----------------------------H-QECRNILLDLRCGAKRSLAD----PPKQTLSL 218 (763)
Q Consensus 185 ~~~~------------~-----------------------------~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~v 218 (763)
.... . | .......|..+........- +..-...+
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 0000 0 0 01111223333222211111 11133568
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 004290 219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (763)
Q Consensus 219 ~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s 298 (763)
++++.++. |+..+.|.+.|.|-+|++++|-...++... ..|.. +|++|+...-++.+++++
T Consensus 452 ~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-----------------~ah~~-~V~gla~D~~n~~~vsa~ 512 (910)
T KOG1539|consen 452 TAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-----------------PAHKG-EVTGLAVDGTNRLLVSAG 512 (910)
T ss_pred EEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccC-----------------ccccC-ceeEEEecCCCceEEEcc
Confidence 89999997 799999999999999999988654443200 12444 699999999999999999
Q ss_pred CCCeEEEEECCCC
Q 004290 299 SGEHVYLMDVNHA 311 (763)
Q Consensus 299 ~d~~i~iwd~~~~ 311 (763)
.+|.+++||....
T Consensus 513 ~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 513 ADGILKFWDFKKK 525 (910)
T ss_pred CcceEEEEecCCc
Confidence 9999999999884
No 67
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=2e-27 Score=242.54 Aligned_cols=235 Identities=20% Similarity=0.257 Sum_probs=160.3
Q ss_pred ccCceEE--EEeCC---CCCEEEEEeCCCcEEEEeCCCCeE------EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 49 HQGCVNA--ISWNS---KGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 49 H~~~V~~--l~fsp---~g~~Lasgs~D~~v~iWd~~~~~~------~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
|.-++.- ..|++ ...+||.+.+||.|.++|...... ++.. ..|...|+.+.|.|. ..+|++++.|.
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDs 122 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDS 122 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCc
Confidence 4444444 67765 346899999999999999865322 2333 689999999999996 78999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
++++||+....... ...+.+|.+.|.+++|.|.++..|++|+.||.|.|||++-...-.. ...+ +.+
T Consensus 123 T~r~Wdvk~s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~----e~~~-~~~ 189 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL----EEFD-NRI 189 (720)
T ss_pred eeeeeeeccceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH----HHHh-hhh
Confidence 99999999743221 3348899999999999999999999999999999999997652100 0001 111
Q ss_pred EecCCC-------ceeeccCCCCCccceEE---EEEeCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290 198 LDLRCG-------AKRSLADPPKQTLSLKS---CDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 198 ~~~~~~-------~~~~~~~~~~~~~~v~~---i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
++...+ ..+.+.....+...|.+ +.+..| ...||+++. |+.|+|||++........... . ...
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~----~-~~~ 263 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPR----G-SDK 263 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeecccccccccCCC----c-ccC
Confidence 111111 01112222233333333 344444 468888887 999999999987654332211 0 111
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+ +. +......+++++....|.+|++.+.|+.|++|++.+
T Consensus 264 ~-~t----~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 264 Y-PT----HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred c-cC----cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 1 01 112223588899999999999999999999999988
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-26 Score=210.94 Aligned_cols=237 Identities=20% Similarity=0.319 Sum_probs=191.0
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
.|+||+.+++.+.++.+|.+|+|++.|.++.||=..+|+.+.++ .||.+.|+|++..-+ .+.+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~--s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD--SKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC--cceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999999999999999 899999999999998 599999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
.+++ .+..++ -..+|..+.|++ ++++++.+. ..+.|.++|++...... ...+
T Consensus 82 ~tGk----------~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----~s~e------- 138 (327)
T KOG0643|consen 82 ETGK----------QLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDI----DSEE------- 138 (327)
T ss_pred CCCc----------EEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhh----cccC-------
Confidence 9853 255554 567899999999 556665554 34689999998654110 0000
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
++...+.+...++.+-|.|. ++.|++|..||.|.+||+++++.+-... ..|..
T Consensus 139 -------p~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~ 191 (327)
T KOG0643|consen 139 -------PYLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS 191 (327)
T ss_pred -------ceEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence 01111223467899999997 6899999999999999999975432110 22444
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 336 (763)
.|+.++++||..++++++.|.+-++||+.+ -..+..+....+++..+++|...-+
T Consensus 192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred -ccccccccCCcceEEecccCccceeeeccc-eeeEEEeeecccccceecccccceE
Confidence 599999999999999999999999999999 5677888888899999999965443
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.7e-27 Score=212.38 Aligned_cols=250 Identities=22% Similarity=0.286 Sum_probs=210.2
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
+.+.++.+++|. ..+..+++++.||...|..++.+.|...+++|+.|+.|.+||+.+|+.++.+ .+|.+.|+.++|+
T Consensus 34 tcGsdrtvrLWN--p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 34 TCGSDRTVRLWN--PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFN 110 (307)
T ss_pred EcCCCceEEeec--ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEec
Confidence 367789999998 5667899999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
.+ ...+++|+.|.++++||.+... .+|++.+....+.|.++... ++.|++|+.||+++.||+|.++.
T Consensus 111 ee--sSVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 111 EE--SSVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred Cc--ceEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeeccee
Confidence 98 6999999999999999999744 47799999999999999985 37899999999999999999874
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
.. .....+|++++|+++ ++..++++.|+++|+.|..+++.+..+
T Consensus 178 ~s---------------------------Dy~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY-------- 221 (307)
T KOG0316|consen 178 SS---------------------------DYFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY-------- 221 (307)
T ss_pred eh---------------------------hhcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh--------
Confidence 31 012357999999997 789999999999999999999876554
Q ss_pred cccccccccccCCCCCcc-ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCC-CeeeeeccCCCCc
Q 004290 263 CVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGL 336 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~-~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~ 336 (763)
.||.+. .-...++......+++|+.||.|++||+...........++.+ +..++++|.....
T Consensus 222 ------------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 222 ------------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred ------------cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 333321 2445667777789999999999999999996655544444444 5678888865544
No 70
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.1e-25 Score=242.97 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=162.2
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-------------EEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-------------~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
|-..|+....++++..+++++.+..+..|+...+..+. .+ .+|.+.|++++|+|.. +.+|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence 34456667777887778888888888888865544321 23 6899999999999932 689999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
|++|++||+...... .....++..+.+|...|.+++|+|.+.++|++++.|++|++||+++++..
T Consensus 97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------ 161 (493)
T PTZ00421 97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------ 161 (493)
T ss_pred CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence 999999999753210 01124567889999999999999976689999999999999999876521
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
.....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+ .
T Consensus 162 -------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~ 207 (493)
T PTZ00421 162 -------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E 207 (493)
T ss_pred -------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence 112346678999999997 789999999999999999987644322 2
Q ss_pred CCCccceeEEEEcCCCCEEEEEe----CCCeEEEEECCCC
Q 004290 276 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNHA 311 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s----~d~~i~iwd~~~~ 311 (763)
+|....+..+.|.+++..|++++ .|+.|++||+++.
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 34433356788999988887764 3799999999873
No 71
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=217.50 Aligned_cols=224 Identities=23% Similarity=0.310 Sum_probs=184.8
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
-+..++++|.||+++|+.++-......+.+++.|.+.+||.++++.|+.++ .||.+.|++++|++. +.++++++.|+
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~ 212 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDE 212 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCc
Confidence 456788999999999999999888889999999999999999999999999 899999999999998 79999999999
Q ss_pred cEEEEECC----CCCCCC-------------------CC------C-CCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290 118 EVRLFNLS----RFSGRG-------------------LD------D-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 118 ~I~iwd~~----~~~~~~-------------------~~------~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
+.+||... .++... .+ . .-..|+..+.+|...|.+..|-. ++..+++++
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaS 291 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTAS 291 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeee
Confidence 99999822 111000 00 0 01235677889999999999988 788999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.|.+..+||+++++.. ....+|...++.++-+|. ..++++++.|-+.|+||++.
T Consensus 292 WDRTAnlwDVEtge~v-------------------------~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVV-------------------------NILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred ccccceeeeeccCcee-------------------------ccccCcchhccccccCCc-ceEEEEeccCceeEeccchh
Confidence 9999999999998743 333467778888999997 57899999999999999993
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
. + ..+..| +||.. .|+++.|..+.+ +++|+.|.+|++||+++..
T Consensus 346 a--I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 346 A--I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred h--c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 2 1 123333 67877 599999998866 8999999999999999854
No 72
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=214.78 Aligned_cols=202 Identities=12% Similarity=0.172 Sum_probs=156.4
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
-+|+.|++.|.+||+|..||.|.|||+.|...-+.+ .+|..+|.+++|+++ |++|+|+|.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs---- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS---- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC----
Confidence 789999999999999999999999999998765556 899999999999999 8999999999999999999743
Q ss_pred CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (763)
+++.+. ...+|....|+|.+.+.++++-.+..-.+-++..++... .. ......
T Consensus 99 ------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-------------Lp--~d~d~d----- 151 (405)
T KOG1273|consen 99 ------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-------------LP--KDDDGD----- 151 (405)
T ss_pred ------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-------------cc--CCCccc-----
Confidence 355554 678999999999887887777777666677766543210 00 000000
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC
Q 004290 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (763)
Q Consensus 213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~ 292 (763)
......+..|.+. |+++++|...|.+.+||..+.+.+..+... ....|..+.|+..|+
T Consensus 152 -ln~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~rit--------------------s~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 152 -LNSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRIT--------------------SVQAIKQIIVSRKGR 209 (405)
T ss_pred -cccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeeec--------------------hheeeeEEEEeccCc
Confidence 0111122357775 899999999999999999988655443211 111488999999999
Q ss_pred EEEEEeCCCeEEEEECCC
Q 004290 293 EVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 293 ~l~~~s~d~~i~iwd~~~ 310 (763)
.|+..+.|..|+.|++..
T Consensus 210 ~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecCCceEEEEehhh
Confidence 999999999999999875
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.8e-26 Score=250.84 Aligned_cols=237 Identities=15% Similarity=0.222 Sum_probs=180.4
Q ss_pred cCceEEEEeCCCCCEEEEEe--CCCcEEEEeCCC------------CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 50 QGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs--~D~~v~iWd~~~------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
...|.+++.+|+|..+|||+ .|+.++||+.+. .+.+..+ ..|.+.|+|+.|+|+ |.+||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~lAsGSD 89 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYLASGSD 89 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeEeeccC
Confidence 56699999999999999999 899999998652 2344555 689999999999999 899999999
Q ss_pred CCcEEEEECCCC-C-------CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290 116 DAEVRLFNLSRF-S-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 116 dg~I~iwd~~~~-~-------~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 187 (763)
|+.|.||..... . +.......++....+.+|...|..++|+| ++.++++++.|++|.+||.++.+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~----- 163 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL----- 163 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee-----
Confidence 999999998831 0 11223344667888999999999999999 679999999999999999998742
Q ss_pred CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004290 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (763)
+....+|...|..+.|+|- |++||+-+.|++|+||+..+......+..+.
T Consensus 164 --------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf--------- 213 (942)
T KOG0973|consen 164 --------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPF--------- 213 (942)
T ss_pred --------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccch---------
Confidence 2334568889999999998 7999999999999999977644333222111
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
...+... .+..+.|||||.+|++... -.++.|.+-.+-+......+|..+..++.|+|
T Consensus 214 -----~~~~~~T-~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 214 -----EESPLTT-FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred -----hhCCCcc-eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 1111111 4888999999999998754 23566666555444555556666666666666
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=8.5e-26 Score=232.28 Aligned_cols=163 Identities=25% Similarity=0.392 Sum_probs=131.6
Q ss_pred EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004290 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (763)
Q Consensus 87 ~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~ 166 (763)
++ .+|..+|.+++|+|+ +++|++++.||.|++|++... .....+..|...+..+.|+| ++.+++++
T Consensus 4 ~~-~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 69 (289)
T cd00200 4 TL-KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETG----------ELLRTLKGHTGPVRDVAASA-DGTYLASG 69 (289)
T ss_pred Hh-cccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCC----------CcEEEEecCCcceeEEEECC-CCCEEEEE
Confidence 44 589999999999999 799999999999999999863 23567778999999999999 55789999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
+.||.|++||+..++.. .....+...+.++.|+|+ +.++++++.|+.|++||++
T Consensus 70 ~~~~~i~i~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 70 SSDKTIRLWDLETGECV-------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred cCCCeEEEEEcCcccce-------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECC
Confidence 99999999999875421 111234567999999997 6788888889999999998
Q ss_pred CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+++....+ .+|.. .|++++|+|++.++++++.|+.|++||+.+
T Consensus 124 ~~~~~~~~--------------------~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 124 TGKCLTTL--------------------RGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred CcEEEEEe--------------------ccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 65433222 12333 599999999999888888899999999875
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=238.21 Aligned_cols=242 Identities=16% Similarity=0.230 Sum_probs=198.2
Q ss_pred CCCCchhhhhhccccCCCc-ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290 6 FHDGSIYDMLDTRHTDTRP-DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84 (763)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~ 84 (763)
+-+++++.|+.+-..+.-+ .....+.+|+........+..+. ...|+++.|+++|.+||+|..+|.|.|||..+.+.
T Consensus 174 l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 174 LQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred ccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 4567777777777554433 35568899997777766655554 88999999999999999999999999999999999
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 164 (763)
+..+...|...|-+++|.. ..+.+|+.|+.|.++|++..+. ....+.+|...|..+.|++ ++.+++
T Consensus 252 ~~~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~-d~~~lA 317 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSP-DGNQLA 317 (484)
T ss_pred cccccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECC-CCCeec
Confidence 9999433999999999993 5899999999999999997542 2335889999999999999 679999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--CCCcEEE
Q 004290 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARL 242 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--~Dg~i~i 242 (763)
+|+.|+.+.|||.....+. .....|...|.+++|+|-...+||+|+ .|+.|++
T Consensus 318 SGgnDN~~~Iwd~~~~~p~-------------------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPK-------------------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred cCCCccceEeccCCCcccc-------------------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 9999999999999555422 222357899999999999889999975 7999999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC--CCeEEEEECCC
Q 004290 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNH 310 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~--d~~i~iwd~~~ 310 (763)
||..++..+..+ ..+..|.+|.|++..+.|+++.. ++.|.||+..+
T Consensus 373 wn~~~g~~i~~v----------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 373 WNTNTGARIDSV----------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred EEcCCCcEeccc----------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 999988766443 22336999999999988887765 77899998776
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.5e-27 Score=215.05 Aligned_cols=228 Identities=18% Similarity=0.293 Sum_probs=193.9
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
..-+..+++|+ ....-++++.+++|+..|.++.|++ ++..++++|.|++|+||+...+..+.++ .+|...|....|+
T Consensus 79 a~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 79 ASGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFS 156 (311)
T ss_pred EecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecC
Confidence 44578999999 5556679999999999999999998 5667888899999999999999999999 8999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|.. .+++++++.|+++++||++.+. + ...+..|...|.++.|+..+..+++||+.|+.|++||+|.-+.
T Consensus 157 p~~-~nlfas~Sgd~~l~lwdvr~~g---------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 157 PHI-PNLFASASGDGTLRLWDVRSPG---------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred CCC-CCeEEEccCCceEEEEEecCCC---------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence 986 8999999999999999998752 2 2348889999999999998999999999999999999998763
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
+ +....+|...|..++|+|....+|++++.|-++||||.......
T Consensus 226 p------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~----------- 270 (311)
T KOG0277|consen 226 P------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA----------- 270 (311)
T ss_pred c------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-----------
Confidence 2 44446789999999999998899999999999999999854422
Q ss_pred cccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004290 263 CVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~ 308 (763)
+.+. ..|.. -+..+.|++ ++.++++.+.|+.++||+.
T Consensus 271 -~e~~-------~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 -IETV-------DHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -hhhh-------hccce-EEeccccccccCceeeecccccceeeecc
Confidence 1111 12333 589999997 5678899999999999984
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-25 Score=230.88 Aligned_cols=195 Identities=18% Similarity=0.284 Sum_probs=156.5
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 54 ~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 133 (763)
+-+.|+ ..+.||.|.. ..|.+|+..++...... ..+...|+++.|+++ |.+|+.|..+|.|.|||....
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~------ 249 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQ------ 249 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhc------
Confidence 346777 4556777654 58999999998865555 334899999999999 899999999999999999863
Q ss_pred CCCCCCceeeec-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290 134 DNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (763)
Q Consensus 134 ~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (763)
+.+..+.+ |...|-+++|. ...+.+|+.|+.|..+|++..+... ....
T Consensus 250 ----k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~------------------------~~~~ 298 (484)
T KOG0305|consen 250 ----KKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV------------------------STLQ 298 (484)
T ss_pred ----cccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh------------------------hhhh
Confidence 23566777 99999999997 4688899999999999999886431 1245
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CC
Q 004290 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NG 291 (763)
Q Consensus 213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg 291 (763)
+|...|..+.|+++ +.+||+|+.|+.+.|||.....+...+ .+|.. .|.+++|+| ..
T Consensus 299 ~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------~~H~a-AVKA~awcP~q~ 356 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTF--------------------TEHTA-AVKALAWCPWQS 356 (484)
T ss_pred cccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEE--------------------eccce-eeeEeeeCCCcc
Confidence 68889999999998 799999999999999999655433322 34655 699999999 45
Q ss_pred CEEEEEeC--CCeEEEEECCCCC
Q 004290 292 EEVLLSYS--GEHVYLMDVNHAG 312 (763)
Q Consensus 292 ~~l~~~s~--d~~i~iwd~~~~~ 312 (763)
..||+|+. |++|++||+.++.
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCc
Confidence 66777765 9999999999853
No 78
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-25 Score=230.43 Aligned_cols=205 Identities=20% Similarity=0.268 Sum_probs=166.0
Q ss_pred ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEccCCCCceEE-EEEeeCCCCcEEEEEeCC
Q 004290 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFC-TKFVPETSDELVVSGAGD 116 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-~~~~~h~~~V~~-v~~~p~~~~~~l~s~s~d 116 (763)
.+++.++|.||...|..+++.+.. .++++|.||++++|+-..++.+. ....+|.+-|.+ ++|.+. ++-.+++|+.|
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~~l~~g~~D 80 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKGRLVVGGMD 80 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCcceEeeccc
Confidence 357788999999999999987544 78899999999999986665443 223677777777 888873 25679999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
.+|.+|.... ..|+..+++|...|.+++... ++. ++|||.|.++++|-...-.
T Consensus 81 ~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~--------------- 133 (745)
T KOG0301|consen 81 TTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV--------------- 133 (745)
T ss_pred ceEEEEecCC----------CCchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh---------------
Confidence 9999999986 367999999999999998765 334 8899999999999764421
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
...++|...|.++++-|. +.+++||.|.+|++|.-.+ ++++| .|
T Consensus 134 ------------~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~~~---------------~l~tf-------~g 177 (745)
T KOG0301|consen 134 ------------YSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKGGT---------------LLKTF-------SG 177 (745)
T ss_pred ------------cccCCcchheeeeeecCC--CcEEeccCcceeeeccCCc---------------hhhhh-------cc
Confidence 224679999999999996 3999999999999997642 23343 56
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.+ .|+.+++-+++. +++++.||.|++|++..
T Consensus 178 HtD-~VRgL~vl~~~~-flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 178 HTD-CVRGLAVLDDSH-FLSCSNDGSIRLWDLDG 209 (745)
T ss_pred chh-heeeeEEecCCC-eEeecCCceEEEEeccC
Confidence 777 499999999865 78999999999999844
No 79
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.9e-25 Score=241.01 Aligned_cols=231 Identities=17% Similarity=0.275 Sum_probs=174.8
Q ss_pred eeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 44 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
..|.||.+.|++++|+| ++++||+|+.|++|+|||+.++. .+..+ .+|...|.+++|+|.. +.+|++++.
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~ 146 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGA 146 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeC
Confidence 35889999999999999 88999999999999999997652 45566 7999999999999984 579999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
|++|+|||+.++ ..+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..
T Consensus 147 DgtVrIWDl~tg----------~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------ 203 (493)
T PTZ00421 147 DMVVNVWDVERG----------KAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------ 203 (493)
T ss_pred CCEEEEEECCCC----------eEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE------------
Confidence 999999999863 33667888999999999999 6789999999999999999987522
Q ss_pred EEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEEe----CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004290 196 ILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sgs----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (763)
. ....|.. .+..+.|.++. ..+++++ .|+.|++||+++...... ..
T Consensus 204 --~-----------tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~------------~~--- 254 (493)
T PTZ00421 204 --S-----------SVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPYS------------TV--- 254 (493)
T ss_pred --E-----------EEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCcee------------Ee---
Confidence 0 0112222 23466788874 4555543 479999999987542110 00
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccce-EeecCCCCeeeeeccC
Q 004290 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPT 332 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~p~ 332 (763)
..+....+....|++++.+|++++ .|+.|++||+.++..... .+....+.+.++|.|.
T Consensus 255 ----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 ----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 011112366678999999999888 499999999998653222 2334556777888875
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=242.66 Aligned_cols=219 Identities=26% Similarity=0.352 Sum_probs=181.5
Q ss_pred cccccccccchhhhhcccccee-eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 24 PDVNHSLQMHSSLVRRLSQERE-LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
...+..|++|+ ......+.. |.||.+.|.+++|..-+.+|++|+.|.+++|||+.+|++.+.+ .+|.+.|.++...
T Consensus 224 ~s~~~tl~~~~--~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 224 GSDDSTLHLWD--LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID 300 (537)
T ss_pred cCCCceeEEee--cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc
Confidence 44567777777 333445555 9999999999999887899999999999999999999999999 7999999999888
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
+. .+++|+.|.+|++|+++++ ..+..+.+|.++|++|..+ +.++++|+.|++|++||+++.+.
T Consensus 301 ~~----~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 301 PF----LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred Cc----eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee
Confidence 64 8899999999999999973 4478888899999999996 57999999999999999997752
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC-CCCcccCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPP 261 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~-~~~~~~~~~~~~~ 261 (763)
+....+|...|+++.+.+. +.+++|+.|++|++||+++. +.+.++
T Consensus 364 -------------------------l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl------- 409 (537)
T KOG0274|consen 364 -------------------------LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL------- 409 (537)
T ss_pred -------------------------eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh-------
Confidence 3445578999999988874 69999999999999999987 444333
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+|.. -+..+. ..+++|++++.|++|++||..+++
T Consensus 410 -------------~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 410 -------------QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred -------------cCCcc-cccccc--cccceeEeccccccEEEeecccCc
Confidence 34544 254443 467889999999999999988853
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.7e-26 Score=225.26 Aligned_cols=201 Identities=18% Similarity=0.302 Sum_probs=163.7
Q ss_pred cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 50 ~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
...|.+++|+|... -+|+.+. -.|.||+..+....+++ ......|.++.|..| |.+|+.|...|.|+|||..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~-- 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKS-- 99 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEecccc--
Confidence 36799999999553 3444333 48999999888777777 567788999999999 89999999999999999654
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
...++.+.+|..+|..+.|+|++...|++|+.|+.+++||+.+.. .+
T Consensus 100 --------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------------------v~ 146 (487)
T KOG0310|consen 100 --------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------------------VQ 146 (487)
T ss_pred --------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------------------EE
Confidence 134788899999999999999999999999999999999998763 12
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
....+|+..|.|.+|+|.++.++++|+.||+||+||++... .+.++ .|. .+|..|.|
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---------------------nhg-~pVe~vl~ 204 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---------------------NHG-CPVESVLA 204 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---------------------cCC-CceeeEEE
Confidence 34457899999999999888899999999999999999763 22211 122 26999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 288 SPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
-|.|..+++++ ...|++||+.++.
T Consensus 205 lpsgs~iasAg-Gn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 205 LPSGSLIASAG-GNSVKVWDLTTGG 228 (487)
T ss_pred cCCCCEEEEcC-CCeEEEEEecCCc
Confidence 99999777665 4589999999753
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7e-26 Score=240.27 Aligned_cols=175 Identities=17% Similarity=0.245 Sum_probs=140.1
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC----------------------------C-----CC
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS----------------------------G-----RG 131 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~----------------------------~-----~~ 131 (763)
.+.+...|.+.|+++.|+++ |++||+|+.|+.|+||.+.... . ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred eeccccccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 34452389999999999999 8999999999999999987500 0 00
Q ss_pred C-----------------CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 132 L-----------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 132 ~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
. -....+|+..+.+|.+.|.+|.|+. + ++|++++.|++|++|++...+ |.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~-----------CL 403 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKE-----------CL 403 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheeccccc-C-CeeEeccccccEEeecCCCcc-----------ee
Confidence 0 0012356778899999999999997 3 688899999999999998765 33
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
.++ .|...|+|++|+|.+.++|++|+-|+.||||++...+.+.-.
T Consensus 404 ~~F---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-------------------- 448 (712)
T KOG0283|consen 404 KVF---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-------------------- 448 (712)
T ss_pred eEE---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh--------------------
Confidence 444 378899999999998999999999999999999876533211
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.-.. -||+++|.|||++.++|+-+|.+++|++..-
T Consensus 449 -Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 449 -DLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred -hhhh-hheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 0111 4999999999999999999999999998873
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=217.36 Aligned_cols=202 Identities=19% Similarity=0.320 Sum_probs=173.1
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
..+.++...|....+++|+.|..+.++|...++.+..+ .||...|+.+.|+|+ ...+++++.|..|+||.+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s-- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS-- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence 56888888888788999999999999999999999888 899999999999999 6899999999999999998643
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
.......|..+|+.+..+| .+.||++++.||+..+.|++++... ....+
T Consensus 295 --------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t~vs~----------- 343 (506)
T KOG0289|consen 295 --------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------TVVSD----------- 343 (506)
T ss_pred --------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------EEEee-----------
Confidence 2455678999999999999 7799999999999999999998633 11111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd 290 (763)
......+++++|+|| |.+|++|..|+.|+|||+.+...+..| .||.+ +|..++|+.+
T Consensus 344 -~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN 400 (506)
T KOG0289|consen 344 -ETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN 400 (506)
T ss_pred -ccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence 122356899999998 799999999999999999987655444 34555 6999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q 004290 291 GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 291 g~~l~~~s~d~~i~iwd~~~~ 311 (763)
|-||++++.|+.|++||++.-
T Consensus 401 GY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ceEEEEEecCCeEEEEEehhh
Confidence 999999999999999999883
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=3.2e-25 Score=213.48 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=131.7
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeC
Q 004290 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASE 168 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~ 168 (763)
.|...|.++...+ ..|++|+.||.+++||..- +....+.+|.++|.+++|.-.+. ..|++++.
T Consensus 103 ~hdDWVSsv~~~~----~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS----KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred cchhhhhhhcccC----ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 5778888887773 6999999999999999983 45888999999999998864332 36999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
|.++++|-+..+.... ..+..-.+|...|-++...++ +..+++|+.|..|+||+..+.
T Consensus 168 Dqtl~Lw~~~~~~~~~---------------------~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKV---------------------KALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred CceEEEEEecCchhhh---------------------hHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCC
Confidence 9999999988876431 112222378999999999997 789999999999999993321
Q ss_pred C--CCcccCCCCC----CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 249 P--PLTSCQKRMS----PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 249 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
. .+........ ..+..... .......||.. +|.+|.|++ ...+++++.|.+|+.||+.+++
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r-~P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTR-TPLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ccccccccchhhhhhhhhhhccccc-CceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 1 1111110000 00000011 11122257887 699999998 5679999999999999999964
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=206.09 Aligned_cols=206 Identities=21% Similarity=0.352 Sum_probs=165.8
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
+.++..+..|.+.|++|+.+ |.++||||.|-+|+|||+.+...+..+ ..|.+.|+++.|.+......|++|+.||.|
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCCcE
Confidence 45677889999999999986 899999999999999999999988888 689999999999998433489999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
.+|+... +.++..+++|.+.|+.|+.+| .+.+.++.+.|+.+++||+-.++.. .+..
T Consensus 110 ~iw~~~~----------W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a------------~v~~ 166 (362)
T KOG0294|consen 110 IIWRVGS----------WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVA------------FVLN 166 (362)
T ss_pred EEEEcCC----------eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccc------------eeec
Confidence 9999986 577899999999999999999 6789999999999999999888632 1111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
+ ......+.|+|. |.+|++++.+ .|-||.+.+-.....+.. .
T Consensus 167 L--------------~~~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~----------------------~ 208 (362)
T KOG0294|consen 167 L--------------KNKATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN----------------------P 208 (362)
T ss_pred c--------------CCcceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc----------------------c
Confidence 1 112234899997 7888888765 678998886544332210 0
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
..+.++.|- ++.+|++|..|+.|.+||.++
T Consensus 209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred ccceeeeec-CCceEEEecCCceEEEeccCC
Confidence 136666665 456799999999999999876
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.3e-25 Score=205.38 Aligned_cols=201 Identities=16% Similarity=0.223 Sum_probs=157.7
Q ss_pred ccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 49 HQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 49 H~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
-.+.|.+|+||| ...+|+.||.|++||+|+++. |..+.+....|.++|.+++|+.+ |..+++|+.|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEccC
Confidence 467899999999 556777999999999999987 45555544689999999999999 79999999999999999997
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCC--EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
++ ...+..|.++|..+.|-+ +.. .|+||+.|++|+.||+|...++...
T Consensus 104 ~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------------------ 153 (347)
T KOG0647|consen 104 GQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL------------------ 153 (347)
T ss_pred CC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee------------------
Confidence 43 677788999999999987 444 8999999999999999987643110
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
.....++++..-. .+++++..++.|.+|++++........ ...+ ...+.+
T Consensus 154 --------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~-------------~SpL------k~Q~R~ 203 (347)
T KOG0647|consen 154 --------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRI-------------ESPL------KWQTRC 203 (347)
T ss_pred --------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhh-------------cCcc------cceeeE
Confidence 0123455554432 389999999999999998764322110 0001 125899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|+..+|....+.|+-.|.+.|..++.+
T Consensus 204 va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 204 VACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred EEEEecCCceEeeeecceEEEEecCCC
Confidence 999999888899999999999988874
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=209.93 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=177.2
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
.+..-+.+|.||++.|++...+.+..+-|+++.|-+.+|||.-+|..++.| .|.--|.+++|+.+ .++|++|+.++
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~d--s~~lltgg~ek 122 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQD--SNYLLTGGQEK 122 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEeccc--chhhhccchHH
Confidence 345667899999999999999999999999999999999999999999998 57778999999999 59999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
.++|||++.++ .+...+.+|.+.|..+.|.- ..+.|++.+.|++||+||.++++..+
T Consensus 123 llrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~------------- 179 (334)
T KOG0278|consen 123 LLRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQ------------- 179 (334)
T ss_pred HhhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEE-------------
Confidence 99999999764 34677889999999999988 45777788999999999999987431
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
.+ .-..+|+++.++++ + .+++....+.|.+||..+...+..+..+
T Consensus 180 ---------sL----~~~s~VtSlEvs~d-G-~ilTia~gssV~Fwdaksf~~lKs~k~P-------------------- 224 (334)
T KOG0278|consen 180 ---------SL----EFNSPVTSLEVSQD-G-RILTIAYGSSVKFWDAKSFGLLKSYKMP-------------------- 224 (334)
T ss_pred ---------EE----ecCCCCcceeeccC-C-CEEEEecCceeEEeccccccceeeccCc--------------------
Confidence 01 11346889999997 4 4566667789999999987766544211
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
..|++..++|+...+++|+.|..++.||..++.
T Consensus 225 --~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 225 --CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --cccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 149999999999999999999999999999953
No 88
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=4.7e-25 Score=231.93 Aligned_cols=253 Identities=17% Similarity=0.198 Sum_probs=191.4
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
+.-..++++|. +++.+.+++++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+.+|. .-.++|+++.|..
T Consensus 178 Gs~~G~lql~N--vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrt 254 (910)
T KOG1539|consen 178 GSSQGRLQLWN--VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRT 254 (910)
T ss_pred eecCCcEEEEE--eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEecc
Confidence 34567888888 88999999999999999999999988999999999999999999999999993 2259999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce-eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|+ ..++++|+..|.+.+||++... .+. ....|.+.|....|-| +..++++++.|..+++|=..++.
T Consensus 255 DG-~p~las~~~~G~m~~wDLe~kk----------l~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~d- 321 (910)
T KOG1539|consen 255 DG-NPLLASGRSNGDMAFWDLEKKK----------LINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGD- 321 (910)
T ss_pred CC-CeeEEeccCCceEEEEEcCCCe----------eeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCC-
Confidence 96 6678888888999999999632 133 3347889999999999 66799999999999999766554
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC------
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK------ 256 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~------ 256 (763)
+..+.+....+|..+..+|.|.-.++..+.+++.|++++.+++.....-.++..
T Consensus 322 --------------------g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 322 --------------------GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred --------------------CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 122345555678999999999977789999999999999998754332111111
Q ss_pred ------C---CCCCCcccccc----------------------------c----cc-ccCC--CCCccceeEEEEcCCCC
Q 004290 257 ------R---MSPPPCVNYFC----------------------------P----MH-LSEH--GRSSLHLTHVTFSPNGE 292 (763)
Q Consensus 257 ------~---~~~~~~~~~~~----------------------------~----~~-~~~~--g~~~~~i~~v~~spdg~ 292 (763)
. ..-.+.+..|. . .| +... ......+++|+.+++|+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0 00000000000 0 00 0000 01223689999999999
Q ss_pred EEEEEeCCCeEEEEECCCCC
Q 004290 293 EVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 293 ~l~~~s~d~~i~iwd~~~~~ 312 (763)
+.+.|+..|.|.+|++.++-
T Consensus 462 F~~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred eEEEeccCCeEEEEEcccCe
Confidence 99999999999999999964
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=6.3e-26 Score=224.99 Aligned_cols=260 Identities=17% Similarity=0.236 Sum_probs=211.7
Q ss_pred ccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCce
Q 004290 17 TRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96 (763)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V 96 (763)
..+|..+.+++..+++|+.+- ..+++++|.||..+|.+++|+++|..++|+|.|+.|++||+++|+++..+. -...+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~ 302 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVP 302 (503)
T ss_pred eeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCc
Confidence 446667788999999999666 568999999999999999999999999999999999999999999999983 34578
Q ss_pred EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (763)
Q Consensus 97 ~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd 176 (763)
+|+.|+|+. .+.|++|+.|+.|+.||++.+ +.++.+..|-+.|..+.|-+ ++..|++.+.|++++||+
T Consensus 303 ~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 303 TCVKFHPDN-QNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWE 370 (503)
T ss_pred eeeecCCCC-CcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEE
Confidence 999999994 589999999999999999984 45788899999999999999 668999999999999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~ 256 (763)
.+.+-.+..+ ... ......++..+|. +.++++-+.|+.|.+|.+...-.+..
T Consensus 371 ~~~~v~ik~i----------------------~~~--~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nk--- 422 (503)
T KOG0282|consen 371 NRIPVPIKNI----------------------ADP--EMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNK--- 422 (503)
T ss_pred cCCCccchhh----------------------cch--hhccCcceecCCC-CCeehhhccCceEEEEecccccccCH---
Confidence 9887543111 111 1234568899997 68999999999999998664321110
Q ss_pred CCCCCCcccccccccccCCCCCc-cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290 257 RMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~-~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
-+.| .||.- +.-..|.|||||++|++|..||.+.+||.++.+.......+..+...+.|+|..
T Consensus 423 -------kK~f-------eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 423 -------KKRF-------EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred -------hhhh-------cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 0111 23321 135779999999999999999999999999977666666777888889999953
No 90
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.4e-24 Score=233.24 Aligned_cols=247 Identities=14% Similarity=0.189 Sum_probs=176.3
Q ss_pred ccccccccchhhhhccccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEEccCCCCc
Q 004290 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSAN 95 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~--------~~~~~~~~h~~~ 95 (763)
+....+++|+. .+...+..|.+|.+.|.+++|+|+ +.+||||+.|++|+|||+.++. .+..+ .+|...
T Consensus 51 G~~gvI~L~~~--~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~ 127 (568)
T PTZ00420 51 GLIGAIRLENQ--MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKK 127 (568)
T ss_pred CceeEEEeeec--CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCc
Confidence 34556677663 334677889999999999999996 7899999999999999997642 23345 789999
Q ss_pred eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
|.+++|+|+. ..+|++++.|++|+|||++++. ....+. |...|.+++|+| ++.+|++++.|+.|++|
T Consensus 128 V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~----------~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIw 194 (568)
T PTZ00420 128 ISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEK----------RAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHII 194 (568)
T ss_pred EEEEEECCCC-CeEEEEEeCCCeEEEEECCCCc----------EEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEE
Confidence 9999999983 3456899999999999998732 233444 667899999999 67899999999999999
Q ss_pred ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc-----eEEEEEeCCCCcEEEEEeCCC----cEEEEeCC
Q 004290 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS-----LKSCDISSTRPHLLLVGGSDA----FARLYDRR 246 (763)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~i~~~p~~~~~l~sgs~Dg----~i~iwd~~ 246 (763)
|+++++.+. ...+|... +....|+++ +.+|++++.|+ .|+|||++
T Consensus 195 D~Rsg~~i~-------------------------tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 195 DPRKQEIAS-------------------------SFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred ECCCCcEEE-------------------------EEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECC
Confidence 999876320 01122222 233456676 56888877664 79999999
Q ss_pred CCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc-cceEeecCCCC
Q 004290 247 MLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDAS 324 (763)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~-~~~~~~~~~~~ 324 (763)
... ++..... ..+.. .+...-..++|.++++|+.|+.|++|++..+.. ....+....+.
T Consensus 249 ~~~~pl~~~~l------------------d~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~ 309 (568)
T PTZ00420 249 NTTSALVTMSI------------------DNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPF 309 (568)
T ss_pred CCCCceEEEEe------------------cCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCc
Confidence 632 2221100 11111 233343455688999999999999999987532 22234455667
Q ss_pred eeeeeccC
Q 004290 325 KIMSFTPT 332 (763)
Q Consensus 325 ~~~~~~p~ 332 (763)
+.++|.|.
T Consensus 310 ~g~~f~Pk 317 (568)
T PTZ00420 310 RSFGFLPK 317 (568)
T ss_pred cceEEccc
Confidence 78888885
No 91
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.5e-25 Score=211.29 Aligned_cols=247 Identities=19% Similarity=0.287 Sum_probs=171.9
Q ss_pred hhhhccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC------CCeEEE
Q 004290 13 DMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKLLH 86 (763)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~------~~~~~~ 86 (763)
.+|-+|+++..+...+.++- .+..+.-+.+.+.+|.++|++|.|+.++++||+|+.|..++||+++ +.+.+.
T Consensus 21 ~FL~QR~i~~~~~~~k~F~~--~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~ 98 (609)
T KOG4227|consen 21 SFLCQREIGSVKSVVKTFRP--DFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG 98 (609)
T ss_pred eeeeecccCCChhhhhhhch--hhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce
Confidence 34556777665543322222 1223344556788999999999999999999999999999999986 345666
Q ss_pred EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEE
Q 004290 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 87 ~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~ 164 (763)
.....|...|+|++|... +.++.+|..+++|...|+++.. .+.++. ...+.|+.|..+|. .+.|+
T Consensus 99 ~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~q----------si~V~~~~~~~~~VY~m~~~P~-DN~~~ 165 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETKQ----------SIYVANENNNRGDVYHMDQHPT-DNTLI 165 (609)
T ss_pred eccCccccceEEEEEccC--CeeEecCCCcceeEeeecccce----------eeeeecccCcccceeecccCCC-CceEE
Confidence 664567799999999988 6999999999999999999743 233332 23458999999996 58899
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd 244 (763)
+.+.+|.|.+||.+........ +. .........++.|+|..+.+|++.+..+-+.+||
T Consensus 166 ~~t~~~~V~~~D~Rd~~~~~~~----------~~------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQNPISL----------VL------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred EEecCceEEEEeccCCCCCCce----------ee------------ecCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 9999999999999987632110 10 0112234678899999899999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+++.+.- +..+ ...+..... .....++.|+|+|..|++--....-.+||+.+
T Consensus 224 ~R~~~~~------------~~~~-~~~~~L~~~-~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 224 RRMQARP------------VYQR-SMFKGLPQE-NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred eccccch------------HHhh-hccccCccc-chhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 9975421 1110 000000011 11357788999998877654443444444433
No 92
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=8.7e-24 Score=228.85 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=147.9
Q ss_pred EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (763)
Q Consensus 68 gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (763)
|+.++.|++|+......+..+ .+|...|.+++|+|+. +.+|++|+.|++|+|||+........ ....++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCC
Confidence 667889999998887777778 7999999999999974 68999999999999999985321100 0013455678999
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
..|.+++|+|.+..+|++++.|++|++||+++++.. .. + .+...|.+++|+|+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd- 178 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK- 178 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC-
Confidence 999999999966567789999999999999987521 00 0 12346899999997
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc----ceeEEEEcCCCCEEEEEeCCC--
Q 004290 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL----HLTHVTFSPNGEEVLLSYSGE-- 301 (763)
Q Consensus 228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~i~~v~~spdg~~l~~~s~d~-- 301 (763)
+.+|++++.|+.|+|||+++++.+.++ .+|.+. .+....|++++.+|++++.|+
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 789999999999999999987654332 223321 133345679999999988764
Q ss_pred --eEEEEECCC
Q 004290 302 --HVYLMDVNH 310 (763)
Q Consensus 302 --~i~iwd~~~ 310 (763)
.|+|||++.
T Consensus 239 ~R~VkLWDlr~ 249 (568)
T PTZ00420 239 MREMKLWDLKN 249 (568)
T ss_pred ccEEEEEECCC
Confidence 799999986
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=213.26 Aligned_cols=208 Identities=20% Similarity=0.267 Sum_probs=171.0
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEc----------------cCCCCceEEEEEeeCC
Q 004290 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIE----------------TGHSANVFCTKFVPET 105 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~----------------~~h~~~V~~v~~~p~~ 105 (763)
+..+..|.-+|.+|+++|++++.++++.|++|.=|++.+++.. ..+. .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D- 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD- 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence 6677889999999999999999999999999999999888744 1111 268889999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
+++|++|+.|..|.||+.++. ++++.+++|.+.|.+++|-. +...+++++.|++|++|++....
T Consensus 214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s---- 277 (479)
T KOG0299|consen 214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS---- 277 (479)
T ss_pred -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH----
Confidence 899999999999999999983 55788999999999999987 77888899999999999988754
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
.+.+.-+|...|.+|..... +..+-+|+.|+++++|++.....+.
T Consensus 278 ---------------------~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqli------------- 322 (479)
T KOG0299|consen 278 ---------------------YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLI------------- 322 (479)
T ss_pred ---------------------HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceee-------------
Confidence 23344567888888887775 5677777799999999996432211
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
| .++.+ .+-+++|-.+. ++++|+.+|.|.+|++...+
T Consensus 323 -f-------rg~~~-sidcv~~In~~-HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 323 -F-------RGGEG-SIDCVAFINDE-HFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred -e-------eCCCC-CeeeEEEeccc-ceeeccCCceEEEeeecccC
Confidence 1 33443 49999998764 58999999999999998854
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=6.7e-25 Score=201.05 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=128.4
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.+|...|.+++|+-+ |..|++|+.|+++++|++..... .......+|.+.|-.++|+|..+.+|++++.|
T Consensus 17 ~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~--------~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRF--------RKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEEccc--CceeeecccCCceEEEEecchhh--------hhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 689999999999999 89999999999999999986421 22445678999999999999999999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
++|++||++.++++..+. ....-.-+.|+|+ +.++++++.|..|.+.|.++.+
T Consensus 87 k~ir~wd~r~~k~~~~i~--------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~ 139 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIE--------------------------TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYK 139 (313)
T ss_pred ceEEEEEeccCcEEEEee--------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccc
Confidence 999999999998541110 1122346789997 6899999999999999999876
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
.+...+. ...++.++|+-++.+++....-|+|.|-...
T Consensus 140 ~~~~~~~----------------------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 140 IVNEEQF----------------------KFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred eeehhcc----------------------cceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 5543211 1137889999888888888778888876543
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.8e-23 Score=196.66 Aligned_cols=196 Identities=21% Similarity=0.250 Sum_probs=156.0
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
.+.|.+|.|+|.+..|+.++.||.+++||+........+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc-
Confidence 678999999999888888899999999999988666665 68899999999987 689999999999999999754
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
...+..|..+|.||.+++ ....+++||.|++|++||.|......
T Consensus 87 ----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~------------------------- 130 (323)
T KOG1036|consen 87 ----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVG------------------------- 130 (323)
T ss_pred ----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccc-------------------------
Confidence 455677999999999998 55788899999999999999743210
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC
Q 004290 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (763)
Q Consensus 210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp 289 (763)
.......|.++... ++.|++|+.|..+.+||+|+........ . .+. ...+.+|++-|
T Consensus 131 -~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-------------e-----S~l-kyqtR~v~~~p 187 (323)
T KOG1036|consen 131 -TFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-------------E-----SSL-KYQTRCVALVP 187 (323)
T ss_pred -ccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-------------c-----ccc-eeEEEEEEEec
Confidence 00122367777775 4699999999999999999875332110 0 111 12599999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC
Q 004290 290 NGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 290 dg~~l~~~s~d~~i~iwd~~~ 310 (763)
++.-.++++-||.|.+=.++.
T Consensus 188 n~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred CCCceEEEeecceEEEEccCC
Confidence 988899999999988755554
No 96
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2e-23 Score=215.57 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=169.1
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCC---EEEEEeCCCcEEEEeCCCCe--EEEEEc-----------
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK--LLHSIE----------- 89 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~---~Lasgs~D~~v~iWd~~~~~--~~~~~~----------- 89 (763)
....|.+++.... -....+.||..+|+|+.|-|+.+ +|++|+.|++|++|.++... ++..+.
T Consensus 32 a~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a 109 (764)
T KOG1063|consen 32 AGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA 109 (764)
T ss_pred CCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe
Confidence 3455666663322 45678899999999999999877 89999999999999876211 111110
Q ss_pred ------------------------------------------------------------------------------cC
Q 004290 90 ------------------------------------------------------------------------------TG 91 (763)
Q Consensus 90 ------------------------------------------------------------------------------~~ 91 (763)
.|
T Consensus 110 ~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~G 189 (764)
T KOG1063|consen 110 RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEG 189 (764)
T ss_pred eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeec
Confidence 47
Q ss_pred CCCceEEEEEeeCCC-CcEEEEEeCCCcEEEEECCCCCCCC-----------CCCCCCCCc----------eeeecccCc
Q 004290 92 HSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLSRFSGRG-----------LDDNAITPS----------ALYQCHTRR 149 (763)
Q Consensus 92 h~~~V~~v~~~p~~~-~~~l~s~s~dg~I~iwd~~~~~~~~-----------~~~~~~~~~----------~~~~~h~~~ 149 (763)
|...|.+++|..... .-+|+|+|.|..||||.+....... .+....... ..+.+|.+.
T Consensus 190 H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDW 269 (764)
T KOG1063|consen 190 HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDW 269 (764)
T ss_pred cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccc
Confidence 777788888876532 4589999999999999987543111 000000111 223489999
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 229 (763)
|+++.|+| .+..|++++.|.++.+|.-....-+ -+-.. .+-...+......++.|+|+ ++
T Consensus 270 V~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGi------------Wv~~v------RlGe~gg~a~GF~g~lw~~n-~~ 329 (764)
T KOG1063|consen 270 VYSVWWHP-EGLDLLSASADKSMIIWKPDENTGI------------WVDVV------RLGEVGGSAGGFWGGLWSPN-SN 329 (764)
T ss_pred eEEEEEcc-chhhheecccCcceEEEecCCccce------------EEEEE------EeecccccccceeeEEEcCC-CC
Confidence 99999999 5567789999999999976654311 01111 12222244567889999997 68
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 230 ~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
.+++-+.-|..++|-..... +........||.. .|+.|+|+|.|.+|++.+.|.+-++|-.-
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~-----------------~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKT-----------------FWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred EEEEecccCcEEEEeccCcc-----------------ceeeccccccccc-cceeeeecCCCCEEEEeccccceeeeccc
Confidence 99999999999999822211 1111112256766 49999999999999999999999999665
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=222.59 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=170.6
Q ss_pred cccCceE---EEEeC-CCCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 48 GHQGCVN---AISWN-SKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 48 gH~~~V~---~l~fs-p~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
.|...|+ .+..+ |.+++|+|||.||.|++|+..... .+..+ ..|...|+.+...-+ ++.|+|+|.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence 3555566 45554 467789999999999999986432 35666 789999999999988 78999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
+|++|+...... -+..++..|.+.|.|+++-..+..++||||-|+.|.+||+.++... .+
T Consensus 96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~------------l~ 155 (735)
T KOG0308|consen 96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT------------LV 155 (735)
T ss_pred eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh------------hh
Confidence 999999986431 3477888999999999994447789999999999999999987420 00
Q ss_pred EecCCCceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290 198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
............ ++..+|++++.++. +..|++|+..+.+++||.++.+.+..+ .|
T Consensus 156 ---~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG 211 (735)
T KOG0308|consen 156 ---ASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG 211 (735)
T ss_pred ---hhccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence 000001112222 67789999999997 689999999999999999998765444 57
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.. .|..+..++||..+++++.||+|++||+..
T Consensus 212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 877 599999999999999999999999999876
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=7.1e-24 Score=209.59 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=142.9
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..|.+.|+.+++.|.. ..++++.+..+.|.|||...............|...+.+|...-++|+|++.....+++++.|
T Consensus 121 i~h~gEVnRaRymPQn-p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQN-PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCC-CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3689999999999985 788999999999999999875544332224456678899999899999999888899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
++|++||+........ .......+.+|...|..++|+|...++|++++.|+.+.|||+|+.+
T Consensus 200 ~~i~lwdi~~~~~~~~------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 200 HTICLWDINAESKEDK------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred CcEEEEeccccccCCc------------------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999999987653100 0112233457888999999999988999999999999999999631
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~ 311 (763)
.- ......+|.. .|++++|.|- +..||+|+.|++|.+||+++.
T Consensus 262 ~~------------------~~~~~~ah~~-~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 262 SK------------------PSHSVKAHSA-EVNCVAFNPFNEFILATGSADKTVALWDLRNL 305 (422)
T ss_pred CC------------------CcccccccCC-ceeEEEeCCCCCceEEeccCCCcEEEeechhc
Confidence 10 0011134555 6999999995 556777888999999999983
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=215.21 Aligned_cols=263 Identities=22% Similarity=0.293 Sum_probs=210.5
Q ss_pred hhhccccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC
Q 004290 14 MLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS 93 (763)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~ 93 (763)
.+..+....++++++.|++|.....+...+.+|.|-.+.|+.+.|.++++.+++++.|+.+++|++...+...++ .+|+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHt 261 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHT 261 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-cccc
Confidence 344445566788999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004290 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~ 173 (763)
..|+++.|... ...+++|+.|.+|++||+.. ..| ..+.. ....+..|..+ ...+++|-.|++|+
T Consensus 262 dkVt~ak~~~~--~~~vVsgs~DRtiK~WDl~k--~~C--------~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 262 DKVTAAKFKLS--HSRVVSGSADRTIKLWDLQK--AYC--------SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVR 325 (459)
T ss_pred cceeeehhhcc--ccceeeccccchhhhhhhhh--hhe--------ecccc-ccccccceEec---ceeeeecccccceE
Confidence 99999999988 35599999999999999996 222 33332 23456677765 36788999999999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (763)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 253 (763)
+||++..... ...+. .+.|+++..+++ +..+.+++.|.++.+.|+++......
T Consensus 326 fwD~Rs~~~~-------------------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 326 FWDIRSADKT-------------------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred EEeccCCcee-------------------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE
Confidence 9999987632 11112 247999999997 67888889999999999998765544
Q ss_pred cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC--CCeeeeecc
Q 004290 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD--ASKIMSFTP 331 (763)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~p 331 (763)
+..... .....++.++|||++.|+++|+.||.|+||++.+++........+. .+..++|.|
T Consensus 379 ~sA~g~-----------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 379 FSAEGF-----------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred eecccc-----------------ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence 321100 1112389999999999999999999999999999886555444443 478899999
Q ss_pred CCCCcc
Q 004290 332 TLNGLE 337 (763)
Q Consensus 332 ~~~~~~ 337 (763)
.+.++.
T Consensus 442 sG~~Ll 447 (459)
T KOG0288|consen 442 SGSGLL 447 (459)
T ss_pred CCchhh
Confidence 766654
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-24 Score=194.96 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=136.5
Q ss_pred EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE-ecCCCCEEE
Q 004290 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-EVGNPHVVW 164 (763)
Q Consensus 86 ~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-sp~~~~~l~ 164 (763)
.++...|...|..+...-. |..|+||+.|++|+|+.++.... ..++..+.+|.++|..++| +|.-+.+|+
T Consensus 4 q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~-------s~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQ-------SKLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred eehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCC-------ceeeeEecCCCCCeeEEeecccccCcEee
Confidence 3455679999988888777 79999999999999999997432 2458899999999999999 566778999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEE
Q 004290 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY 243 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iw 243 (763)
+++.||.|.||.-..++- ........|...|++++|.|.+ +-.|+++++||.|.|.
T Consensus 75 ScsYDgkVIiWke~~g~w-----------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl 131 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRW-----------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL 131 (299)
T ss_pred EeecCceEEEEecCCCch-----------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence 999999999998776531 1234455788999999999964 5679999999999999
Q ss_pred eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC---C-----------CEEEEEeCCCeEEEEECC
Q 004290 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---G-----------EEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd---g-----------~~l~~~s~d~~i~iwd~~ 309 (763)
+.+....- +..... ..|.- .|++|+|.|- | +.|++|+.|+.|+||+..
T Consensus 132 ~~~~~g~w-----------~t~ki~------~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 132 TYDSSGGW-----------TTSKIV------FAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred EEcCCCCc-----------cchhhh------hcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 98864110 000110 22433 4999999986 4 569999999999999877
Q ss_pred C
Q 004290 310 H 310 (763)
Q Consensus 310 ~ 310 (763)
+
T Consensus 194 ~ 194 (299)
T KOG1332|consen 194 S 194 (299)
T ss_pred C
Confidence 6
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=6.5e-24 Score=207.62 Aligned_cols=223 Identities=18% Similarity=0.233 Sum_probs=183.2
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
.++.+-+.+ ..+.+.+.+|+||...|+.+.|+|+...+++++.|..|+||........... ..|..+|+.+..+|.
T Consensus 239 ~d~~av~~d--~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t- 314 (506)
T KOG0289|consen 239 EDKTAVLFD--KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT- 314 (506)
T ss_pred CCCceEEEe--cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC-
Confidence 444555555 4555678899999999999999999999999999999999999877766666 789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
|.||++++.|++..+.|++.+.. +.... ...-.+++.+|+| ++.+|.+|..||.|+|||+..+.
T Consensus 315 -geYllsAs~d~~w~Fsd~~~g~~----------lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~-- 380 (506)
T KOG0289|consen 315 -GEYLLSASNDGTWAFSDISSGSQ----------LTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT-- 380 (506)
T ss_pred -CcEEEEecCCceEEEEEccCCcE----------EEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--
Confidence 89999999999999999997431 22221 1223589999999 77999999999999999998875
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
.+..+++|..+|.+|+|+.+ |.+||+++.|+.|++||+|..+.+.++..+
T Consensus 381 -----------------------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~------ 430 (506)
T KOG0289|consen 381 -----------------------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD------ 430 (506)
T ss_pred -----------------------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc------
Confidence 24556789999999999996 899999999999999999988765544211
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
....+.++.|.+.|.+|++++.|=.|++++-.+
T Consensus 431 --------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 431 --------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred --------------ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 111499999999999999998887888776554
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.6e-24 Score=197.78 Aligned_cols=268 Identities=18% Similarity=0.234 Sum_probs=207.2
Q ss_pred CCCchhhhhhccccCCC--cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290 7 HDGSIYDMLDTRHTDTR--PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84 (763)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~ 84 (763)
|...++++.++|+-+.- ..-+....+|- .-..+.+.+++||++.|+|+..+-+.++|++|+.|.+++|||+++|++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~--s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWY--SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEE--ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 46677888888876553 44566666665 556788999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeC-----CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 159 (763)
+..+ ....+|..+.|++. |++++.+.. .+.|.++|++..... ....+|...+..+...++.+.|.| -
T Consensus 87 la~~--k~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~-l 158 (327)
T KOG0643|consen 87 LATW--KTNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGP-L 158 (327)
T ss_pred EEEe--ecCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecc-c
Confidence 9988 35678999999999 677766553 467999999864321 122356788888899999999999 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004290 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (763)
Q Consensus 160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~ 239 (763)
+.+|++|.+||.|.+||+++++.. +.....|...|+.++++|+ ..+|++++.|.+
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~------------------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKEL------------------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTT 213 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCcee------------------------eechhhhccccccccccCC-cceEEecccCcc
Confidence 689999999999999999998632 2223346778999999998 689999999999
Q ss_pred EEEEeCCCCCCCcccCCCCC-------C---------C---Ccccc-----------cccccc-----cCCCCCccceeE
Q 004290 240 ARLYDRRMLPPLTSCQKRMS-------P---------P---PCVNY-----------FCPMHL-----SEHGRSSLHLTH 284 (763)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~-------~---------~---~~~~~-----------~~~~~~-----~~~g~~~~~i~~ 284 (763)
-++||.++.+.+.++..... | . ..+.+ |....+ ...||-+ +|++
T Consensus 214 akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINs 292 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINS 292 (327)
T ss_pred ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-Ccce
Confidence 99999999887666543211 0 0 00000 000000 1156777 7999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|+|+|+|+..++|+.||.|++.-...
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999986554
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.3e-23 Score=195.50 Aligned_cols=222 Identities=15% Similarity=0.241 Sum_probs=169.2
Q ss_pred eccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe------------EE--EEEccCCCCceEEEEEeeCCCCcEE
Q 004290 46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK------------LL--HSIETGHSANVFCTKFVPETSDELV 110 (763)
Q Consensus 46 l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~------------~~--~~~~~~h~~~V~~v~~~p~~~~~~l 110 (763)
-+-|.+.|++|...+ .|+++++|+.||.|.|||+++.. ++ +.-..+|...|.++.|.|-. ..+|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Ccee
Confidence 356899999999988 68999999999999999997532 11 11124788999999999974 5689
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 188 (763)
.+++.|.++++||.++.+ ....|+ ..+.|++-+++|-.. -++++|..|-.|++.|+.++...
T Consensus 118 tssSFDhtlKVWDtnTlQ----------~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----- 181 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQ----------EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----- 181 (397)
T ss_pred ecccccceEEEeecccce----------eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----
Confidence 999999999999999832 233343 667899999988532 36778888899999999988622
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCccccc
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYF 267 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 267 (763)
....+|...|.++.|+|...-.|++|+.||.||+||+|... .+..+.... ..
T Consensus 182 --------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn-------~k 234 (397)
T KOG4283|consen 182 --------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN-------TK 234 (397)
T ss_pred --------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc-------Cc
Confidence 23357889999999999877789999999999999999652 222222111 00
Q ss_pred cccccc-CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 268 CPMHLS-EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 268 ~~~~~~-~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+..+. ...|.+ .|++++|..++.++++.+.|..+++|+..++.
T Consensus 235 ~~p~~~~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 235 RPPILKTNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred cCccccccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence 111111 123444 69999999999999999999999999998864
No 104
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=207.89 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=135.4
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..|+..|+-+.|+++ |++|||++.|.+..||.+..... .+..+++.+|..+|..+.|+| +.+++++|+.|
T Consensus 221 ~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~-------~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~ 290 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVH-------FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFD 290 (519)
T ss_pred hhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcc-------eeeeeeeecccCceEEEEECC-CCCeEEecCch
Confidence 789999999999999 89999999999999999885322 355788899999999999999 55888899999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
..+.+||+.++.... ....++...+.+++|.|+ +..|++|+.|+.|..||+....
T Consensus 291 e~~~lwDv~tgd~~~------------------------~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRH------------------------LYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred HheeeccCCcchhhh------------------------hcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcch
Confidence 999999999987431 111124578899999998 7899999999999999997432
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+.. +.|-+...|.+++..+||+++++.+.|..|++++..+
T Consensus 346 -~~~--------------------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 346 -LGN--------------------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -hhc--------------------ccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 111 1223333599999999999999999999999998766
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=207.22 Aligned_cols=221 Identities=16% Similarity=0.275 Sum_probs=182.1
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
++++|..+++|+ +..-.++.+|+.|.+.|+.|++.. ..++++++|++|+.|.++. ..++++ ...+.+..+.-+
T Consensus 84 SGs~DG~VkiWn--lsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti--lg~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWN--LSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI--LGKSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEe--hhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee--eccccccccccc
Confidence 578999999999 666678999999999999999986 6788999999999999875 466666 234567777777
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
.. +..++||+. .|.|||.+. ..|+..+.--.+.|.++.|+|....+|++|+.|+.|.+||+|+.++
T Consensus 157 ~~--~~~FaTcGe--~i~IWD~~R----------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 157 RK--NSVFATCGE--QIDIWDEQR----------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred cc--cccccccCc--eeeeccccc----------CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 76 688999986 599999986 3568888877889999999998888999999999999999999875
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
.. .++.+. .-+.|+|+| +...|++|+.|..++.||+|..+.-
T Consensus 223 l~----------KVi~~m----------------RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p----------- 264 (433)
T KOG0268|consen 223 LK----------KVILTM----------------RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP----------- 264 (433)
T ss_pred cc----------eeeeec----------------cccceecCc-cccceeeccccccceehhhhhhccc-----------
Confidence 52 222222 346799999 5889999999999999999976521
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+..+ .+|-+ .|..|.|||.|+.+++|+-|.+|+||.++.+
T Consensus 265 -~~v~-------~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 265 -LNVH-------KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred -chhh-------cccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence 1111 34555 5999999999999999999999999999885
No 106
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4e-23 Score=209.69 Aligned_cols=218 Identities=16% Similarity=0.255 Sum_probs=156.9
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
+...++||++.|.+|...|.|.+||+|+.||+|+||.+.||.|++++. ..+.|.|++|+|..+-..||++ ....+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA-~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVA-VGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEE-ecCceEE
Confidence 446789999999999999999999999999999999999999999983 5678999999998733344444 4444767
Q ss_pred EECCCCCCCC-------C--C---C------CCC---------CCceeeecccCceeEEEEecCCCCEEEEEeCC---Cc
Q 004290 122 FNLSRFSGRG-------L--D---D------NAI---------TPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT 171 (763)
Q Consensus 122 wd~~~~~~~~-------~--~---~------~~~---------~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d---g~ 171 (763)
.+..-+.... + . . ..+ .-+.....|...|+.|.|+- .|.+|++...+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcce
Confidence 6655331100 0 0 0 000 01234446889999999998 66898887654 46
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
|.|.++...... .-+....+.|.++.|+|..+ +|++++ -..|||||+.....+
T Consensus 548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELV 600 (733)
T ss_pred EEEEeccccccc-------------------------CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHH
Confidence 888888765421 11223356788999999854 566655 468999999875433
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
..+. ....+|..++.+|.|..|+.++.|+.+..||+.-.
T Consensus 601 KkL~---------------------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 601 KKLL---------------------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred HHHh---------------------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 2221 11126999999999999999999999999998763
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.1e-24 Score=201.82 Aligned_cols=257 Identities=18% Similarity=0.233 Sum_probs=206.7
Q ss_pred CCcccccccccchhhhhcccccee------eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc
Q 004290 22 TRPDVNHSLQMHSSLVRRLSQERE------LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~------l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~ 95 (763)
.+.+.+.-|.+|+....+++.-.. |.-|.++|.|+.||.|.++||+|+.||.|+||.+++|.|++.|...|+..
T Consensus 229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkG 308 (508)
T KOG0275|consen 229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKG 308 (508)
T ss_pred eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccC
Confidence 345677888899877666543333 33478899999999999999999999999999999999999998899999
Q ss_pred eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
|+|+.|+.+ +..+++++.|.+++|.-+..+ +++..+.+|...|+...|.+ +++.+++++.||+|++|
T Consensus 309 vt~l~FSrD--~SqiLS~sfD~tvRiHGlKSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 309 VTCLSFSRD--NSQILSASFDQTVRIHGLKSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVW 375 (508)
T ss_pred eeEEEEccC--cchhhcccccceEEEeccccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEe
Confidence 999999999 789999999999999999873 45899999999999999999 67899999999999999
Q ss_pred ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~ 255 (763)
+..+.++.. .+ ...+...+|+++..-|.++..++++...++|.|.++.. +.
T Consensus 376 ~~KtteC~~-----------Tf------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Qv----- 426 (508)
T KOG0275|consen 376 HGKTTECLS-----------TF------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QV----- 426 (508)
T ss_pred cCcchhhhh-----------hc------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eE-----
Confidence 999877431 11 11234568899999998899999999999999998863 33
Q ss_pred CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
++.|..+.. .++..-+.+.||.|.++++.+.|+.++.|.+.+++.......+...+-.++.+|-.
T Consensus 427 --------VrsfsSGkR-----EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHq 491 (508)
T KOG0275|consen 427 --------VRSFSSGKR-----EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQ 491 (508)
T ss_pred --------EeeeccCCc-----cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCccc
Confidence 333322221 11246677899999999999999999999999987655555555555556666643
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.2e-22 Score=188.64 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=128.1
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE- 168 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~- 168 (763)
..-...|+++.|+++ |.++++++.|.+|+|||...+ ..+.++..++-.|..+.|.... ..++.++.
T Consensus 11 ~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g----------~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk 77 (311)
T KOG1446|consen 11 RETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSG----------KQVKTINSKKYGVDLACFTHHS-NTVIHSSTK 77 (311)
T ss_pred ccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCC----------ceeeEeecccccccEEEEecCC-ceEEEccCC
Confidence 345678999999999 899999999999999999974 3366777777788888987634 44445554
Q ss_pred -CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 169 -DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 169 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
|.+|+..++.+++ .+..+++|...|++++.+|- ++.+++++.|++||+||+|.
T Consensus 78 ~d~tIryLsl~dNk-------------------------ylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNK-------------------------YLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRV 131 (311)
T ss_pred CCCceEEEEeecCc-------------------------eEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeEecC
Confidence 8899999998875 46677899999999999997 58999999999999999996
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+...-+. .. .-..++|.|.|-++|++...+.|++||++..
T Consensus 132 ~~cqg~l~----------------------~~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 132 KKCQGLLN----------------------LS-GRPIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred CCCceEEe----------------------cC-CCcceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 54321110 00 2344789999999999999889999999984
No 109
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=1.7e-23 Score=206.91 Aligned_cols=243 Identities=19% Similarity=0.272 Sum_probs=188.9
Q ss_pred ccccccchhhhh--------ccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeE------EEEEccC
Q 004290 27 NHSLQMHSSLVR--------RLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL------LHSIETG 91 (763)
Q Consensus 27 ~~~~~~~~~~~~--------~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~------~~~~~~~ 91 (763)
...+.+++.... ..++-..|.||++.=.+|+|++.. -.|++|+.|++|++||+..... ....+.+
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~ 225 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG 225 (422)
T ss_pred CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec
Confidence 345666664322 234455899999988899999854 4789999999999999975322 2334479
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc
Q 004290 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~ 171 (763)
|...|..++|+|.. ..+|++++.|+.+.|||.++.. .++.....+|.+.|+|++|+|.++.+|||||.|++
T Consensus 226 h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 226 HEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred CCcceehhhccccc-hhhheeecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 99999999999986 7899999999999999999621 25577788999999999999999999999999999
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
|.+||+|+... .+..+.+|...|..+.|+|.....||+++.|+.+.|||+......
T Consensus 297 V~LwDlRnL~~------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 297 VALWDLRNLNK------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEEeechhccc------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 99999998763 355566789999999999998899999999999999999864432
Q ss_pred cccCC-CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 004290 252 TSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNH 310 (763)
Q Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~-~s~d~~i~iwd~~~ 310 (763)
..... ...|++.+ +.-.||.. .|+.+.|+|+..++++ .+.|+.+.||.+..
T Consensus 353 q~~eda~dgppEll-------F~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELL-------FIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCccee-------EEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22111 11111111 11146666 5999999999887654 56699999999875
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=8.8e-22 Score=196.11 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=184.9
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCC--------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290 43 ERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~--------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
.+.+.||+..|.|++.+|+.-++++|-.-| .|+|||..+-..+..+ ......|.|++|++.+.|.+|+...
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEec
Confidence 455679999999999999999999876555 4999998888878777 4667789999999976566666643
Q ss_pred --CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC--------
Q 004290 115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP-------- 184 (763)
Q Consensus 115 --~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~-------- 184 (763)
.+..+.+||...+. .....+.-...|....|+|.+++++++++. +.+.+|+++.+....
T Consensus 176 ~s~~h~lSVWdWqk~~----------~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ 244 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKA----------KLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKR 244 (626)
T ss_pred CCCccccchhhchhhh----------ccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccc
Confidence 35568899998632 234455566778888999999999988875 889999998875431
Q ss_pred --------------CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290 185 --------------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 185 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
...++.......+|+........ ... .|.+.|.+++.-.+ | .|++|+.|..|..|| ...+.
T Consensus 245 ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k-~~~-aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 245 EKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK-QVH-AHDGGVFSLCMLRD-G-TLLSGGKDRKIILWD-DNYRK 319 (626)
T ss_pred cceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe-Eee-ecCCceEEEEEecC-c-cEeecCccceEEecc-ccccc
Confidence 11222233445555553332221 122 78899999999986 4 677799999999999 44444
Q ss_pred CcccCCCCC--CCCccccc-------------ccc------cccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290 251 LTSCQKRMS--PPPCVNYF-------------CPM------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 251 ~~~~~~~~~--~~~~~~~~-------------~~~------~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
+.....+.. +.+.+..- ..+ .+...||.. ....++.+|+...+++++.|+.+++|+
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--
Confidence 333322221 11111000 000 011245655 588999999999999999999999999
Q ss_pred CCCccceEeecCCCCeeeeeccCC
Q 004290 310 HAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
..++.-......+.....|+|.+
T Consensus 397 -~~k~~wt~~~~d~~~~~~fhpsg 419 (626)
T KOG2106|consen 397 -DHKLEWTKIIEDPAECADFHPSG 419 (626)
T ss_pred -CCceeEEEEecCceeEeeccCcc
Confidence 23344444456667777788753
No 111
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=209.62 Aligned_cols=248 Identities=21% Similarity=0.306 Sum_probs=195.3
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004290 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 107 (763)
.+++++. .......+++.-..+.|.++.|..||++||.|...|.|+|+|..+...++.+ .+|..+|..+.|+|.. +
T Consensus 48 ~rvqly~--~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~ 123 (487)
T KOG0310|consen 48 VRVQLYS--SVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-N 123 (487)
T ss_pred cEEEEEe--cchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-C
Confidence 3455554 3444455556667789999999999999999999999999997665566666 7999999999999985 7
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 187 (763)
..|++|+.|+.+++||+.+.. ....+.+|++.|.|.+|+|.++++++|||.||+|++||++.....
T Consensus 124 t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---- 189 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---- 189 (487)
T ss_pred eEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce----
Confidence 899999999999999999732 245788999999999999998899999999999999999986411
Q ss_pred CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004290 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (763)
+.. -.|..+|-++.+-|. |.+|++++ ...|++||+-++..+....
T Consensus 190 ---------v~e------------lnhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll~~~------------ 234 (487)
T KOG0310|consen 190 ---------VVE------------LNHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLLTSM------------ 234 (487)
T ss_pred ---------eEE------------ecCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceehhhh------------
Confidence 111 135678999999996 67787776 4689999999664331110
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcc
Q 004290 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (763)
Q Consensus 268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 337 (763)
..|.. .|||+++..++..|++++-|+.|++||+.+ -.......-..++-.++.+|+...+.
T Consensus 235 -------~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 235 -------FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred -------hcccc-eEEEEEeecCCceEeecccccceEEEEccc-eEEEEeeecccceeeEEecCCCceEE
Confidence 11333 599999999999999999999999999766 44555566677777888888655553
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=189.06 Aligned_cols=224 Identities=16% Similarity=0.193 Sum_probs=156.9
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
+..|+||.+.|++++|+.||++|||++.|+.|+||++..- ++++.- -.-+..+.+.|.|+. ..+++++....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc-~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDC-KSVVVSVKRGN 155 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCc-ceEEEEEccCC
Confidence 3467899999999999999999999999999999998752 222221 112356889999996 56777777778
Q ss_pred cEEEEECCCCCCCCCC--CCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 118 EVRLFNLSRFSGRGLD--DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
++++|.+......... ...+.-...-+.|.-.|..+-... ++.+|++++.|..|.+|+++ ++.+..+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~i--------- 224 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSI--------- 224 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeee---------
Confidence 8999988753221100 000011112234666677776654 77899999999999999998 5433111
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
......-+..+.+|+ |..+++++.-.-|++|.+--.+.- ++ .+..+. +...
T Consensus 225 ----------------dtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG-~f------qev~rv-----f~Lk 275 (420)
T KOG2096|consen 225 ----------------DTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDG-TF------QEVKRV-----FSLK 275 (420)
T ss_pred ----------------ccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCc-ch------hhhhhh-----heec
Confidence 111233467889997 799999999999999987533210 00 011111 2226
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
||.. .|+.++|+|+.+.+++.+.||+++|||++-
T Consensus 276 GH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 276 GHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 7877 599999999999999999999999999876
No 113
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.9e-22 Score=188.06 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=129.4
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe-cCCCCEE
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVV 163 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~l 163 (763)
+..|..+|..-|.++.|.+. |+.+++|+.|++|+|||.+...+. +.+....+.|.+.|..|.|. |.=|+.+
T Consensus 5 ~~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceE
Confidence 34455789999999999999 899999999999999998764433 46677889999999999994 5557899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEE
Q 004290 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARL 242 (763)
Q Consensus 164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~i 242 (763)
++++.|+++.||.-..... ++...-| ............|+.+.|.|.. |-.||+++.||++||
T Consensus 77 A~cS~Drtv~iWEE~~~~~---------~~~~~~W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSE---------EAHGRRW-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred EEEecCCceeeeeeccccc---------cccccee-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 9999999999997532210 0100001 1112222345789999999953 567999999999999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC---CCEEEEEeCC-----CeEEEEECCC
Q 004290 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNH 310 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd---g~~l~~~s~d-----~~i~iwd~~~ 310 (763)
|+...--.+....... .+... ..+.+....+..||.|+|. ..+|++|+.+ +.++||....
T Consensus 141 YEA~dp~nLs~W~Lq~-------Ei~~~-~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 141 YEAPDPMNLSQWTLQH-------EIQNV-IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EecCCccccccchhhh-------hhhhc-cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9986543322211000 00000 0011222225788999874 4567777654 3666665544
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.5e-22 Score=189.22 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=137.0
Q ss_pred EEEEeCCCcEEEEeCCCC------------eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 65 LISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 65 Lasgs~D~~v~iWd~~~~------------~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
|+.|++...|.-+++.-. ..+..+ ..|.++|++++.+ +.++++|+.|-+|+|||++..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~----- 73 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKR----- 73 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEec----ceeEeccCCCCcEEEEeccch-----
Confidence 556666655555544211 123334 6899999999997 689999999999999999973
Q ss_pred CCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290 133 DDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
..+..+..|.+.|+++.|.+.- ...|++|+.||.|.+|+..... .+...
T Consensus 74 -----~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-------------------------~~~sl 123 (362)
T KOG0294|consen 74 -----KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-------------------------LLKSL 123 (362)
T ss_pred -----hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-------------------------Eeeee
Confidence 3367788899999999998732 1267899999999999988764 23344
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
.+|...|+.++.+|. +++-++.+.|+.+++||+-.++.-..+.- ++ .-+.|.|+|.|
T Consensus 124 K~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-------------------~~---~at~v~w~~~G 180 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLNL-------------------KN---KATLVSWSPQG 180 (362)
T ss_pred cccccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeecc-------------------CC---cceeeEEcCCC
Confidence 567888999999997 68888999999999999988764322210 01 14559999999
Q ss_pred CEEEEEeCCCeEEEEECCC
Q 004290 292 EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~ 310 (763)
.+++.++.+ .|-+|.+.+
T Consensus 181 d~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 181 DHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred CEEEEEecc-EEEEEeccc
Confidence 988877665 678887766
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=197.09 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=81.3
Q ss_pred eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEE-ecC-CcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290 620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-LGD-EAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (763)
Q Consensus 620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l-~gH-~~~V~~v~~sp~~~~laS~s~D~~IrvW~ 697 (763)
.+|...+++++ +|+.|++-++||.||.|+|||--+++|++++ ++| ...|+++.|..+++++.|+|.|.+||+|.
T Consensus 258 ~qht~ai~~V~----Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 258 DQHTGAITQVR----YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred cccccceeEEE----ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 35888899888 9999999999999999999999999999998 568 56899999999999999999999999999
Q ss_pred CCCCCCccccCCCCC
Q 004290 698 PSASVPSIVSGGAAG 712 (763)
Q Consensus 698 ~~~~~~~~~~~g~~~ 712 (763)
+.++.++..+.|...
T Consensus 334 i~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGT 348 (430)
T ss_pred ecCCceEEEEecCCc
Confidence 999999998876643
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.6e-23 Score=187.26 Aligned_cols=239 Identities=16% Similarity=0.165 Sum_probs=187.2
Q ss_pred Ccccccccccchhhhhcc-ccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceE
Q 004290 23 RPDVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVF 97 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~ 97 (763)
+...|+.++|...--... +++.+|+||.++|..++|-. -|.+|||++.||.|.||.-++++- .... ..|...|+
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVN 106 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVN 106 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccce
Confidence 456788899887544443 78899999999999999965 799999999999999999988853 3344 67999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC--C-----------CEEE
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--P-----------HVVW 164 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~-----------~~l~ 164 (763)
+++|.|..-|-.|++++.||.|.|.+.+...+ +.......+|.-.|+++.|.|.. + ..|+
T Consensus 107 sV~wapheygl~LacasSDG~vsvl~~~~~g~-------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred eecccccccceEEEEeeCCCcEEEEEEcCCCC-------ccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 99999987688999999999999999987422 23355667899999999999841 1 4699
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC---cEEEEEeCCCcEE
Q 004290 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFAR 241 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~---~~l~sgs~Dg~i~ 241 (763)
+|+.|..|+||+....+-. .-..+.+|...|..++|.|..+ .+||+++.||++.
T Consensus 180 SgGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9999999999998875311 1122467899999999999642 5899999999999
Q ss_pred EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
||-.+....-.+ ..-+ +.... .+..+.||+.|..|++++.|+.|.+|.-+.
T Consensus 237 Iwt~~~e~e~wk---------------~tll--~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWK---------------KTLL--EEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCccc---------------cccc--ccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 998773211000 0000 01122 599999999999999999999999997655
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=200.92 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=189.7
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
++|...|.+++.|+||++||+|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-.. ...|++++.|+.|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecC--ccceeeeecCCceEEEehhH
Confidence 389999999999999999999999999999999999999998 899999999999988 58899999999999999996
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
...+.++.+|.+.|..|.... -...+.+|+.|+++++|++......
T Consensus 276 ----------~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql----------------------- 321 (479)
T KOG0299|consen 276 ----------LSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL----------------------- 321 (479)
T ss_pred ----------hHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-----------------------
Confidence 345788899999999997765 4456656669999999999544321
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
.+.++...+-|++|-.+ ..|++|+.+|.|.+|++-+.+++.+....+...+.. .+-.+. .+|++|+
T Consensus 322 ---ifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~--------~~~~~~-~Witsla 387 (479)
T KOG0299|consen 322 ---IFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL--------DPVNGN-FWITSLA 387 (479)
T ss_pred ---eeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCc--------cccccc-cceeeeE
Confidence 12245678899999875 689999999999999999988876654332211100 001111 3899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCc---cceEeecCCCCeeeeeccCCC
Q 004290 287 FSPNGEEVLLSYSGEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPTLN 334 (763)
Q Consensus 287 ~spdg~~l~~~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~p~~~ 334 (763)
..|...++++|+.+|.|++|.+..+.. +.........++.++|+++++
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 999999999999999999999998743 223333466778888888766
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.5e-23 Score=191.75 Aligned_cols=246 Identities=21% Similarity=0.306 Sum_probs=201.8
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC------CC---------------
Q 004290 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS--------------- 81 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~------~~--------------- 81 (763)
+.+.++...||. ++..+++..+.||.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 165 tASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~ 242 (481)
T KOG0300|consen 165 TASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEH 242 (481)
T ss_pred ecccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence 456789999998 8899999999999999999999999999999999999999972 10
Q ss_pred ---------------C----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290 82 ---------------R----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (763)
Q Consensus 82 ---------------~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (763)
+ ..+..+ .+|...|.++.|... ++.+++++.|++..+||++++ +++..
T Consensus 243 sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~ 309 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNI 309 (481)
T ss_pred ccccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceecc
Confidence 0 123344 789999999999998 899999999999999999984 56889
Q ss_pred eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEE
Q 004290 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (763)
Q Consensus 143 ~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (763)
+.+|....+.++-+| ...++++.+.|-+.++||++..- ..+..+++|+..|+++.
T Consensus 310 LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 310 LTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVV 364 (481)
T ss_pred ccCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEE
Confidence 999999999999999 67899999999999999998432 34556778999999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290 223 ISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (763)
Q Consensus 223 ~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~ 301 (763)
|+-+ ..+++|+.|.+|++||++++. ++.++ ....+++.++.+..++.|+.-..+.
T Consensus 365 F~~d--d~vVSgSDDrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 365 FNTD--DRVVSGSDDRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred EecC--CceeecCCCceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCc
Confidence 9986 589999999999999999764 22222 1122689999999999898888999
Q ss_pred eEEEEECCCCCcc----ceEeecCCCCeeeeeccC
Q 004290 302 HVYLMDVNHAGGR----AMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 302 ~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~p~ 332 (763)
.|++||++..... ....++...+.+.+|.-.
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999999884421 123445556667777653
No 119
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.4e-23 Score=210.84 Aligned_cols=238 Identities=20% Similarity=0.208 Sum_probs=192.5
Q ss_pred cccccccccchhhhhccc----cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceE
Q 004290 24 PDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVF 97 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~----~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~ 97 (763)
++-|..|++|+.--...+ .+..++.|.+.|+.+....+|+.|+|+|.|-+|++|+...+ -++.++ ..|...|.
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVk 121 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVK 121 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchhe
Confidence 444667777774443332 46788999999999999999999999999999999999877 577777 78999999
Q ss_pred EEEE-eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290 98 CTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 98 ~v~~-~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
|+++ .++ ..++|||+.|+.|.+||++.+..+............+. ++..+|++++.++ .+..|++|+..+.+++|
T Consensus 122 cla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 122 CLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLW 198 (735)
T ss_pred eeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEe
Confidence 9999 666 68999999999999999997533211111112233344 8999999999998 66899999999999999
Q ss_pred ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~ 255 (763)
|.++.+.+ ....+|+..|.++-.+++ |..++++++||+|++||+.-.+.+.++
T Consensus 199 Dprt~~ki-------------------------mkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~- 251 (735)
T KOG0308|consen 199 DPRTCKKI-------------------------MKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATY- 251 (735)
T ss_pred ccccccce-------------------------eeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeE-
Confidence 99998632 223478899999999997 799999999999999999976544333
Q ss_pred CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.-|..+ |+++..+|+-.++++|+.|+.|+.=|+++..
T Consensus 252 -------------------~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 252 -------------------IVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred -------------------EeccCc-eEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 335553 9999999999999999999999999999853
No 120
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=6.4e-22 Score=186.79 Aligned_cols=209 Identities=18% Similarity=0.270 Sum_probs=150.8
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEEccCCCCceEEEEEe-------eCCCCcEEEE
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVS 112 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~------------~~~~~~~~~h~~~V~~v~~~-------p~~~~~~l~s 112 (763)
-...+.|+|||.-|++-+.|..+.+|++... +....+.......|...+|. |+ ..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeee
Confidence 3557899999999999999999999998521 01111111234678888887 44 579999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---ceeEEEEecCCCCEEEEEeCCCcEEEEEC-CCCCCCCCCCC
Q 004290 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGS 188 (763)
Q Consensus 113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~ 188 (763)
.+.+.-|++||.-+++.++ ....-.|.+ ...+++|+|++ ..|+ ++....|++||+ |.+..+.....
T Consensus 129 ssr~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccccCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhh
Confidence 9999999999999866433 111222433 35689999955 5553 567799999999 55543311100
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (763)
. .....+..+-+.+++|+|.+...+++|+.-..+-||.-..+.++..+
T Consensus 199 ~------------------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-------------- 246 (406)
T KOG2919|consen 199 V------------------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-------------- 246 (406)
T ss_pred h------------------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee--------------
Confidence 0 01122445678899999998889999999999999887776554333
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 004290 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (763)
Q Consensus 269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~ 311 (763)
.||.+ .||.++|+++|+.|++|.. |..|.+||++..
T Consensus 247 ------ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 247 ------GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ------cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 45666 5999999999999999998 889999999884
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=3.7e-21 Score=200.17 Aligned_cols=186 Identities=12% Similarity=0.186 Sum_probs=131.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
+.+++|++.|+.|++||+.+++.+..+ ..+. .+.+++|+|+ +..+ ++++.++.|++||..++. ..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~~-~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~----------~~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVGQ-RPRGITLSKD--GKLLYVCASDSDTIQVIDLATGE----------VI 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECCC-CCCceEECCC--CCEEEEEECCCCeEEEEECCCCc----------EE
Confidence 457889999999999999999988888 4443 4678999999 5655 677789999999998632 23
Q ss_pred eeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (763)
Q Consensus 141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (763)
..+..+. .+..++|+|++..++++++.++.|++||+++.+.. ..+ + ....+.+
T Consensus 67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~-----------~-~~~~~~~ 119 (300)
T TIGR03866 67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEI-----------P-VGVEPEG 119 (300)
T ss_pred EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEe-----------e-CCCCcce
Confidence 3344333 35678999955445556667899999999875421 000 0 1123567
Q ss_pred EEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-
Q 004290 221 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY- 298 (763)
Q Consensus 221 i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s- 298 (763)
++|+|+ +.++++++.++ .+.+||.+++....... .+. .+..++|+|+|++|++++
T Consensus 120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~-------------------~~~---~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVL-------------------VDQ---RPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------cCC---CccEEEECCCCCEEEEEcC
Confidence 999997 67888887765 57788987654321110 001 256789999999886665
Q ss_pred CCCeEEEEECCCC
Q 004290 299 SGEHVYLMDVNHA 311 (763)
Q Consensus 299 ~d~~i~iwd~~~~ 311 (763)
.++.|++||+.++
T Consensus 177 ~~~~v~i~d~~~~ 189 (300)
T TIGR03866 177 IGGTVSVIDVATR 189 (300)
T ss_pred CCCEEEEEEcCcc
Confidence 5999999999885
No 122
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=3.4e-21 Score=196.40 Aligned_cols=217 Identities=18% Similarity=0.244 Sum_probs=152.2
Q ss_pred ccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEE-----EEccCCCCceEEEEEeeCCCCcEEEE
Q 004290 39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH-----SIETGHSANVFCTKFVPETSDELVVS 112 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~-----~~~~~h~~~V~~v~~~p~~~~~~l~s 112 (763)
+-+.+..|.+|.+.|+.+.|+| +..+||+||.|..|+||.+..|-... ....+..-.|.++.|+|.. +.+|++
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa-Dgil~s 146 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA-DGILAS 146 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc-CceEEe
Confidence 3456778899999999999999 56789999999999999998543211 1213344578999999986 556666
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004290 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (763)
Q Consensus 113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 192 (763)
++ -|.++|||+.+. +.+..+.+|.+.|.++.|+. ++.++++++.|+.|+|||-|..-...+...+|..
T Consensus 147 ~a-~g~v~i~D~stq----------k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 147 GA-HGSVYITDISTQ----------KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cc-CceEEEEEcccC----------ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCcccccccccc
Confidence 55 699999999973 44778899999999999998 7799999999999999999987544333232222
Q ss_pred cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCC-CcccCCCCCCCCccccc
Q 004290 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPP-LTSCQKRMSPPPCVNYF 267 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 267 (763)
. .=..+.|.-+ -..|++.+.+ ..|++||.+.... +.++..
T Consensus 215 ~-----------------------rdsRv~w~Gn-~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel----------- 259 (1012)
T KOG1445|consen 215 M-----------------------RDSRVLWAGN-WERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL----------- 259 (1012)
T ss_pred c-----------------------hhheeeeccc-hhhhhhcccchhhheeeeeeeccccCCcceeEEe-----------
Confidence 1 1112344443 2345554443 5689999986431 111110
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (763)
Q Consensus 268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~ 312 (763)
.....|.---|.||.++|+.++. +.+++++.+....
T Consensus 260 ---------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 260 ---------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred ---------ecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 11112555568999988887775 8899999998743
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=2.1e-22 Score=200.07 Aligned_cols=212 Identities=19% Similarity=0.293 Sum_probs=166.4
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEc-cCCCCceEEEEEeeCCCCcEEEEE
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-TGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+..+.+++|. |..-|.++.+|...+++.||+. |.|+|||+.... .+..+. ......|.++..+|+ ++.|++|
T Consensus 408 rharq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivG 483 (705)
T KOG0639|consen 408 RHARQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVG 483 (705)
T ss_pred chHHhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEec
Confidence 4456666664 8888999999999999999987 799999997532 222221 124567899999999 7999999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
+.-.++.|||+..+..+. ...+..-.-.++.++.+| +.++.++++.||.|.|||+++..
T Consensus 484 GeastlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~------------ 542 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT------------ 542 (705)
T ss_pred cccceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce------------
Confidence 999999999999754322 233333445678899999 66888899999999999999865
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
.+..+++|+..+.||.++++ |..|-+|+-|++||.||+|.+..+...
T Consensus 543 -------------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqh------------------- 589 (705)
T KOG0639|consen 543 -------------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH------------------- 589 (705)
T ss_pred -------------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhh-------------------
Confidence 34556789999999999997 789999999999999999988654322
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
...+ .|.++-++|++.+|++|..++.+.+-....
T Consensus 590 --dF~S-QIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 590 --DFSS-QIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred --hhhh-hheecccCCCccceeeecccCcEEEEecCC
Confidence 1222 599999999999999999988877765544
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-22 Score=210.76 Aligned_cols=207 Identities=16% Similarity=0.242 Sum_probs=161.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEc--cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIE--TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~~~~~~~--~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
...++|+.+++-..++.++.. .++|+.+... ++...+. +.-...+..|+|...- .++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~-~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLY-SNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccch-hhhheeecCCCcEEEEec
Confidence 345677788888888888764 7888877532 2222220 1111345678898543 789999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
...... ..+..|..|...++++.|++..+++|+|||.||+|++||+|..+..
T Consensus 118 nk~~rn-------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--------------------- 169 (839)
T KOG0269|consen 118 NKSIRN-------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--------------------- 169 (839)
T ss_pred Cccccc-------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---------------------
Confidence 964221 3467889999999999999999999999999999999999987632
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
..+.+....|..++|+|..+++|+++...|.+++||+|.-. +|...+ ..|.+ +|.+
T Consensus 170 ----~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------r~~~k~-------~AH~G-pV~c 225 (839)
T KOG0269|consen 170 ----STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------RCEKKL-------TAHNG-PVLC 225 (839)
T ss_pred ----ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------hHHHHh-------hcccC-ceEE
Confidence 22233567899999999989999999999999999999532 343333 44666 7999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+.|+|++.+|++|+.|++|+|||+.+.
T Consensus 226 ~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 226 LNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred EeecCCCceeeecCCCccEEEEeccCC
Confidence 999999999999999999999999874
No 125
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1e-22 Score=203.18 Aligned_cols=265 Identities=15% Similarity=0.196 Sum_probs=195.2
Q ss_pred Ccccccccccchh-----hhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------
Q 004290 23 RPDVNHSLQMHSS-----LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI--------- 88 (763)
Q Consensus 23 ~~~~~~~~~~~~~-----~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~--------- 88 (763)
+++++..+++|+. .++.++.+.-.+.| .|++++|++.|..|+..+..-+++|+|-...+.+...
T Consensus 184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm 261 (641)
T KOG0772|consen 184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM 261 (641)
T ss_pred eccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh
Confidence 4678899999983 23334444444444 7999999999998888888889999997644332221
Q ss_pred --ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-----cccCceeEEEEecCCCC
Q 004290 89 --ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-----CHTRRVKKLAVEVGNPH 161 (763)
Q Consensus 89 --~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~ 161 (763)
..||...++|.+|+|.. ...|++++.||+++|||+.....+ +++++ +-.-+++.++|+| ++.
T Consensus 262 ~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q---------~qVik~k~~~g~Rv~~tsC~~nr-dg~ 330 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQ---------LQVIKTKPAGGKRVPVTSCAWNR-DGK 330 (641)
T ss_pred hccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhh---------eeEEeeccCCCcccCceeeecCC-Ccc
Confidence 16899999999999996 789999999999999999975432 22232 3345789999999 668
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc--ceEEEEEeCCCCcEEEEEeCCCc
Q 004290 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAF 239 (763)
Q Consensus 162 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~l~sgs~Dg~ 239 (763)
+|++|+.||.|.+|+.+....- . .+.....|.. .|+||.|+++ |++|++-+.|++
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v~---------p-------------~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~t 387 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTVR---------P-------------VMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDT 387 (641)
T ss_pred hhhhcccCCceeeeecCCcccc---------c-------------ceEeeeccCCCCceeEEEeccc-cchhhhccCCCc
Confidence 8999999999999998654311 0 1111223444 8999999998 799999999999
Q ss_pred EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCeEEEEECCCCCc
Q 004290 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGG 313 (763)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~------d~~i~iwd~~~~~~ 313 (763)
+++||+|..+. ++..+... ....+-+.++|||+.+.|++|+. -+.+++||..+...
T Consensus 388 LKvWDLrq~kk------------pL~~~tgL------~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 388 LKVWDLRQFKK------------PLNVRTGL------PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred eeeeecccccc------------chhhhcCC------CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 99999997652 22221110 11124688999999999999875 46899999999777
Q ss_pred cceEeecCCCCeeeeeccCCCCcccCCC
Q 004290 314 RAMRYTVGDASKIMSFTPTLNGLELQPP 341 (763)
Q Consensus 314 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 341 (763)
.+.+...+..+-...|+|..+.+-....
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecC
Confidence 7777666777777889998877755443
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=3.5e-21 Score=191.91 Aligned_cols=234 Identities=16% Similarity=0.236 Sum_probs=175.0
Q ss_pred eeeccc-cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290 44 RELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 44 ~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
..++++ +..|.|++|.++|. +++|..+|.|.||+..+.+..+.. ..|.+.|.+++...+ | .|+||+.|+.|..|
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~-~aH~ggv~~L~~lr~--G-tllSGgKDRki~~W 313 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV-HAHDGGVFSLCMLRD--G-TLLSGGKDRKIILW 313 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe-eecCCceEEEEEecC--c-cEeecCccceEEec
Confidence 345554 36799999999998 679999999999999888888877 499999999999988 4 56669999999999
Q ss_pred ECCCCCCCCCCC------------------------------CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290 123 NLSRFSGRGLDD------------------------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 123 d~~~~~~~~~~~------------------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
|-.-.+.+..+. ..........+|.+....++.+| +..+++|++.|+.+
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceE
Confidence 944322211100 00011223456888999999999 55788899999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
++|+ ..+ ..|.. .-..++.|+.|+|. + .+|+|+..|...+.|..+...+.
T Consensus 393 ~lW~--~~k--------------~~wt~------------~~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 393 RLWN--DHK--------------LEWTK------------IIEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred EEcc--CCc--------------eeEEE------------EecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEE
Confidence 9999 222 12211 11356789999997 4 99999999999999999854332
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEee--cCCCCeeeeec
Q 004290 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT--VGDASKIMSFT 330 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~ 330 (763)
.. -. +.+++.|+|+|+|.+|+.|+.|+.|+||.+...+......+ ++.++..+.|+
T Consensus 443 ~~---------------------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 443 IH---------------------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred EE---------------------ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 11 11 33699999999999999999999999999988765554433 45777778888
Q ss_pred cCCCC
Q 004290 331 PTLNG 335 (763)
Q Consensus 331 p~~~~ 335 (763)
++++-
T Consensus 501 ~Ds~~ 505 (626)
T KOG2106|consen 501 SDSQF 505 (626)
T ss_pred CCCce
Confidence 87543
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.7e-21 Score=170.43 Aligned_cols=209 Identities=23% Similarity=0.338 Sum_probs=162.8
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-----EEEccCCCCceEEEEEeeC--CCCcEEEEEeC-CCc
Q 004290 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVFCTKFVPE--TSDELVVSGAG-DAE 118 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-----~~~~~~h~~~V~~v~~~p~--~~~~~l~s~s~-dg~ 118 (763)
+-|.+.|.|.+|+|+|++||+|+.|++|++.-+....+. ..+ .-|.+.|..++|..+ +.+.+|++++. |..
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 468999999999999999999999999999876543321 234 569999999999754 33667887654 666
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEE-EEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL-AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
|++-|..++ ...+.+.+|.+.|..+ .| ++.+|++|+.|.+|++||++-+... +.+
T Consensus 165 iy~tdc~~g----------~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v-----------~~l 220 (350)
T KOG0641|consen 165 IYITDCGRG----------QGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCV-----------NTL 220 (350)
T ss_pred EEEeecCCC----------CcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeecccee-----------eec
Confidence 777777663 3478899999999887 44 5689999999999999999987532 111
Q ss_pred E-ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290 198 L-DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 198 ~-~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
- +.+.+ .-....|.+++..|. |.+|++|-.|....+||+|.+..+..+ +.
T Consensus 221 ~~~~~~~--------glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq~f--------------------~p 271 (350)
T KOG0641|consen 221 DNDFHDG--------GLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQRF--------------------HP 271 (350)
T ss_pred cCcccCC--------CcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceeeee--------------------CC
Confidence 1 01111 112357899999997 799999999999999999988665443 33
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.. .|.+|.|+|.-.|+++++.|..|++-|+..
T Consensus 272 hsa-dir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 272 HSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred Ccc-ceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 555 599999999999999999999999999876
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.2e-21 Score=191.45 Aligned_cols=218 Identities=17% Similarity=0.266 Sum_probs=166.2
Q ss_pred cccceeeccccCceEEEEeCCCC--CEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290 40 LSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g--~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+....+.+-|.+.|++++|+|.. +++|+|..-|+|-+||+.+. ..+..+ ..|..+|.++.|+|.+ ...+++.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ss 253 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSS 253 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeee
Confidence 34456667789999999999965 58889999999999999532 234455 7899999999999986 7899999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
|.||+|++-|++.... +.+..+......+.++.|+..++..+ .+..=|...+||+|++...
T Consensus 254 SyDGtiR~~D~~~~i~--------e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~---------- 314 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNIS--------EEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE---------- 314 (498)
T ss_pred ccCceeeeeeecchhh--------HHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc----------
Confidence 9999999999996432 22333333455677788888555444 5555569999999998632
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
......|...|++++++|..+.+||+++.|++++|||+|......+ | .+.
T Consensus 315 --------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p-~ls 364 (498)
T KOG4328|consen 315 --------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------P-FLS 364 (498)
T ss_pred --------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------------c-cee
Confidence 1112235558999999999999999999999999999997654321 0 111
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
...|.. .|.++.|||.+-.|++.+.|..|+|||..
T Consensus 365 t~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 123544 59999999998889999999999999875
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=199.49 Aligned_cols=267 Identities=18% Similarity=0.266 Sum_probs=179.3
Q ss_pred CchhhhhhccccCCCcccccccccchhhhhccc----cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290 9 GSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84 (763)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~ 84 (763)
+.++.-+..+++......++.+.+++.-...++ .++....|...|..+.|-|....|++++.|.++++||+++.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 455555666666555555666666664333333 2356678999999999999777899999999999999999988
Q ss_pred EEE--EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC------------C---C--CCCCCceeeec
Q 004290 85 LHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL------------D---D--NAITPSALYQC 145 (763)
Q Consensus 85 ~~~--~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~------------~---~--~~~~~~~~~~~ 145 (763)
+.. + .||.+.|.+++|.|.. ...|++|+.||.|.|||++....... . . ...+-+...+.
T Consensus 135 ~G~~~~-~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 135 VGGRLN-LGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ecceee-cccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 776 5 7999999999999985 78999999999999999985321000 0 0 00011222334
Q ss_pred ccCceeE---EEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290 146 HTRRVKK---LAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 146 h~~~v~~---l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
+...|.+ +.+.. +...|++++. |+.|++||+++.......... ....+.........+.++
T Consensus 213 ~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~--------------~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPR--------------GSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred ccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCC--------------cccCccCcccceeeeEEE
Confidence 4444444 44444 5578888887 999999999998643111100 001111112234567888
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc-ceeEEEEcCCCCEEEEEeCC
Q 004290 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSG 300 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~v~~spdg~~l~~~s~d 300 (763)
..+.. |.+|++.+.|+.|.+|+++....-- +..| .|+... .-..-..+|++.+|++|+.|
T Consensus 278 ~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP-----------~~~~-------sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 278 ILDSS-GTYLFASCTDNSIYFYNMRSLSISP-----------VAEF-------SGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred EecCC-CCeEEEEecCCcEEEEeccccCcCc-----------hhhc-------cCcccceeeeeeecCCCCceEeccCCC
Confidence 88886 5677777789999999999754211 1111 111110 11223468999999999999
Q ss_pred CeEEEEECCCC
Q 004290 301 EHVYLMDVNHA 311 (763)
Q Consensus 301 ~~i~iwd~~~~ 311 (763)
...++|.+.+.
T Consensus 339 ~~ayiw~vs~~ 349 (720)
T KOG0321|consen 339 EQAYIWVVSSP 349 (720)
T ss_pred cceeeeeecCc
Confidence 99999998884
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.9e-21 Score=181.01 Aligned_cols=161 Identities=18% Similarity=0.296 Sum_probs=124.3
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..-...|.+++|+|.. ..+++.+|.|++||+|+++.. +.. .+ +....|.++|.+++|+. ++..+++|+.|
T Consensus 24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~-g~~------~~-ka~~~~~~PvL~v~Wsd-dgskVf~g~~D 93 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNS-GQL------VP-KAQQSHDGPVLDVCWSD-DGSKVFSGGCD 93 (347)
T ss_pred CCcccchheeEecccc-CceEEecccCCceEEEEEecC-Ccc------cc-hhhhccCCCeEEEEEcc-CCceEEeeccC
Confidence 4567889999999953 678889999999999999963 221 22 44567999999999998 66888899999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc--EEEEEeCCCcEEEEeCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH--LLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--~l~sgs~Dg~i~iwd~~~ 247 (763)
+.+++||+.+++.. ....|..+|.++.|-+. .. +|++||.|.+|+.||+|.
T Consensus 94 k~~k~wDL~S~Q~~--------------------------~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 94 KQAKLWDLASGQVS--------------------------QVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred CceEEEEccCCCee--------------------------eeeecccceeEEEEecC-CCcceeEecccccceeecccCC
Confidence 99999999998632 11247788999999874 34 899999999999999998
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
..++.++..+ + .+.++.. -..+++++..+..|.+|++.++
T Consensus 147 ~~pv~t~~LP----------------e------RvYa~Dv--~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 147 SNPVATLQLP----------------E------RVYAADV--LYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred CCeeeeeecc----------------c------eeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence 7665544211 1 2333322 3467899999999999999874
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.4e-22 Score=196.02 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=154.8
Q ss_pred CCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 62 GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 62 g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
+++++++.. -..|.+|.+......... .--.++|.+++-+|. |.+|+.|...|.|++|.+.++ ..+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG----------~LL 116 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSG----------ILL 116 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhh-cccccceeeeecCCC--ceEEEeecccCcEEEEEeccc----------cHH
Confidence 356666643 457889998765544322 235678999999999 788888889999999999984 447
Q ss_pred eeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (763)
Q Consensus 141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (763)
..+.+|-..|+|+.|+- ++.+|+|||.||.|.+|++..--. .........+..+..|+.+|++
T Consensus 117 ~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~----------------a~~~~~~~p~~~f~~HtlsITD 179 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVS----------------ADNDHSVKPLHIFSDHTLSITD 179 (476)
T ss_pred HHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecc----------------cccCCCccceeeeccCcceeEE
Confidence 78899999999999997 678999999999999998764321 1111234456667789999999
Q ss_pred EEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290 221 CDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 221 i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
+...+.+ ..+++++|.|.++++||+..+..+.++..+ ..+++++.+|-++.+++|+.
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------------------~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----------------------SSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------------------CcceeEEEcccccEEEecCC
Confidence 9887641 358999999999999999998766554211 15999999999999999999
Q ss_pred CCeEEEEECCC
Q 004290 300 GEHVYLMDVNH 310 (763)
Q Consensus 300 d~~i~iwd~~~ 310 (763)
+|.|.+.++..
T Consensus 238 ~G~I~~~~~~~ 248 (476)
T KOG0646|consen 238 EGKIFQNLLFK 248 (476)
T ss_pred cceEEeeehhc
Confidence 99999998877
No 132
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=2e-21 Score=211.80 Aligned_cols=236 Identities=20% Similarity=0.321 Sum_probs=181.3
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEEccCCCCceEEEEEe
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~------------------~~~~~~~~~~h~~~V~~v~~~ 102 (763)
+.+-.+..|.++|+|+.|+|||++||+||+|+.|.||+... .+++..+ .+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence 45566778999999999999999999999999999999872 1245555 7999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|+ +.+|++++.|++|.|||..+. +.+..+.+|.+.|..+.|.| -+++|+|-+.|++|++|.+.+...
T Consensus 139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence 98 799999999999999999983 45889999999999999999 669999999999999999766432
Q ss_pred CCCCCCCCc---------------------------ccceEEEecCCCceeeccCCCCCccceEEEEEeCC----C----
Q 004290 183 CPPAGSSHQ---------------------------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----R---- 227 (763)
Q Consensus 183 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~----~---- 227 (763)
...+...-. .....+.-+..+....-..+-+|..++.++.|+|. .
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 211000000 00011111111222233445688899999999983 1
Q ss_pred ----Cc----EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290 228 ----PH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 228 ----~~----~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
++ .+|+|+.|++|-||.....+++..+ +.-.+..|..++|+|||..|+++|.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--------------------~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--------------------HNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhh--------------------hhhhcCceeeeeEcCCCCeEEEEec
Confidence 22 7899999999999998766554332 1112225999999999999999999
Q ss_pred CCeEEEEECCC
Q 004290 300 GEHVYLMDVNH 310 (763)
Q Consensus 300 d~~i~iwd~~~ 310 (763)
||+|.++....
T Consensus 346 DGtV~~i~Fee 356 (942)
T KOG0973|consen 346 DGTVALIHFEE 356 (942)
T ss_pred CCeEEEEEcch
Confidence 99999999877
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2e-22 Score=210.71 Aligned_cols=223 Identities=16% Similarity=0.275 Sum_probs=177.5
Q ss_pred ceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 52 ~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.+..|+|+. +.++||+++..|.|.+||+.. .+.+..| ..|+..++++.|++.. ..+|++|+.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence 456678875 568999999999999999987 4455556 7999999999999986 789999999999999999974
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
+ ...++.+....|+.|.|+|..+..|+++...|.+++||+|....+
T Consensus 167 ~----------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------ 212 (839)
T KOG0269|consen 167 K----------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------ 212 (839)
T ss_pred c----------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence 3 256677788999999999988999999999999999999998643
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
...+..|.++|.|+.|+|+ ..+||+|+.|+.|+|||+.+....... ++ +...+|..|+|
T Consensus 213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~--------tI------------nTiapv~rVkW 271 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKH--------TI------------NTIAPVGRVKW 271 (839)
T ss_pred HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCcccee--------EE------------eecceeeeeee
Confidence 3334568999999999995 789999999999999999865422110 11 22336999999
Q ss_pred cCCCCEEEEE-eC--CCeEEEEECCCCCccceEee-cCCCCeeeeecc
Q 004290 288 SPNGEEVLLS-YS--GEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTP 331 (763)
Q Consensus 288 spdg~~l~~~-s~--d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~p 331 (763)
-|..++.++. +. |-.|++||++.+..+...+. +......++|..
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 9987765544 43 88999999999765554443 455666666654
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=188.42 Aligned_cols=217 Identities=20% Similarity=0.280 Sum_probs=169.7
Q ss_pred eeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCC----------------CeEEEEEccCCCCceEEEEEeeCC
Q 004290 44 RELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~----------------~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
...-+|.+.|+-+.-++- ..+.|+-+..|.|+|||+.. .+.+.++ .+|...=+.++|+|-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc
Confidence 334468899998888874 45778888999999999742 3456777 7899999999999964
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
...|+||..-+.|++|...++....- ...|.+|...|-.|+|+|....+|+|||.||+|+|||+|.+...
T Consensus 224 -~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-- 293 (440)
T KOG0302|consen 224 -TGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-- 293 (440)
T ss_pred -ccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--
Confidence 45788998889999999998543321 35567899999999999998899999999999999999998522
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
.......|...|+.|.|+...+ +||+|+.||+++|||+|..+.- ..+.
T Consensus 294 ---------------------~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------~pVA 341 (440)
T KOG0302|consen 294 ---------------------AAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------QPVA 341 (440)
T ss_pred ---------------------ceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------Ccce
Confidence 1111145778999999999755 9999999999999999975422 1222
Q ss_pred ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~ 311 (763)
.| .-|.. +|++|.|+|. ...|++++.|..|.|||+.-.
T Consensus 342 ~f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 342 TF-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eE-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 22 22444 7999999995 456777888999999999763
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=4.9e-21 Score=198.16 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=128.6
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeE-EEEecCCCC
Q 004290 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-LAVEVGNPH 161 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~ 161 (763)
+..+.+ .+|...|..+++.+. ..++++|.||++++|+-.... +.....+.+|.+.|.. +++-+.++.
T Consensus 5 ~ls~~l-~gH~~DVr~v~~~~~---~~i~s~sRd~t~~vw~~~~~~--------~l~~~~~~~~~g~i~~~i~y~e~~~~ 72 (745)
T KOG0301|consen 5 KLSHEL-EGHKSDVRAVAVTDG---VCIISGSRDGTVKVWAKKGKQ--------YLETHAFEGPKGFIANSICYAESDKG 72 (745)
T ss_pred eeEEEe-ccCccchheeEecCC---eEEeecCCCCceeeeeccCcc--------cccceecccCcceeeccceeccccCc
Confidence 344556 799999999998876 689999999999999987532 2234567788888887 888765556
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEE
Q 004290 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (763)
Q Consensus 162 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~ 241 (763)
.+++|+.|.+|.+|.+.+..+ +....+|...|.+++...+ + .+++||.|.+++
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P-------------------------~~~LkgH~snVC~ls~~~~-~-~~iSgSWD~Tak 125 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEP-------------------------LYTLKGHKSNVCSLSIGED-G-TLISGSWDSTAK 125 (745)
T ss_pred ceEeecccceEEEEecCCCCc-------------------------hhhhhccccceeeeecCCc-C-ceEecccccceE
Confidence 788999999999999887653 4455678889999987775 3 499999999999
Q ss_pred EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
+|-..... .. ..||.. .|++|++-|++ .+++|+.|.+|++|.-
T Consensus 126 vW~~~~l~---------------~~-------l~gH~a-sVWAv~~l~e~-~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 126 VWRIGELV---------------YS-------LQGHTA-SVWAVASLPEN-TYVTGSADKTIKLWKG 168 (745)
T ss_pred Eecchhhh---------------cc-------cCCcch-heeeeeecCCC-cEEeccCcceeeeccC
Confidence 99765321 11 156776 59999999998 6899999999999954
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-22 Score=210.60 Aligned_cols=185 Identities=19% Similarity=0.341 Sum_probs=150.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
|-+.+++....+..+++||.+. + ..|...|.++..-.. ++.+++|+.|..+-+|.+... .+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~------~-~~hsaav~~lk~~~s--~r~~~~Gg~~~k~~L~~i~kp----------~~ 62 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE------F-VAHSAAVGCLKIRKS--SRSLVTGGEDEKVNLWAIGKP----------NA 62 (825)
T ss_pred Ccccccceeeeeeccccccchh------h-hhhhhhhceeeeecc--ceeeccCCCceeeccccccCC----------ch
Confidence 3445566666677788898653 2 468888888888444 789999999999999999863 33
Q ss_pred ceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290 140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (763)
Q Consensus 140 ~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (763)
+..+.+|..+|.+|.|++ ...+|++|+.+|+|++||+...+ .+....+|...+.
T Consensus 63 i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk-------------------------~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAK-------------------------IVRTLTGHLLNIT 116 (825)
T ss_pred hheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhh-------------------------hhhhhhccccCcc
Confidence 667899999999999999 66899999999999999999765 2334456788899
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 220 ~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
++.|+|. +.+++.|+.|+.+++||.+... |..++ .+|.. .|..+.|+|+|++++.++.
T Consensus 117 sv~f~P~-~~~~a~gStdtd~~iwD~Rk~G-------------c~~~~-------~s~~~-vv~~l~lsP~Gr~v~~g~e 174 (825)
T KOG0267|consen 117 SVDFHPY-GEFFASGSTDTDLKIWDIRKKG-------------CSHTY-------KSHTR-VVDVLRLSPDGRWVASGGE 174 (825)
T ss_pred eeeeccc-eEEeccccccccceehhhhccC-------------ceeee-------cCCcc-eeEEEeecCCCceeeccCC
Confidence 9999997 7899999999999999999543 34333 34444 4899999999999999999
Q ss_pred CCeEEEEECCCC
Q 004290 300 GEHVYLMDVNHA 311 (763)
Q Consensus 300 d~~i~iwd~~~~ 311 (763)
|..++|||+..+
T Consensus 175 d~tvki~d~~ag 186 (825)
T KOG0267|consen 175 DNTVKIWDLTAG 186 (825)
T ss_pred cceeeeeccccc
Confidence 999999998774
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.3e-20 Score=199.29 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=164.3
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
+|+.+-+.|+|.|+|++|++++.||.|++|+.... +....+ .-+...|.+++.. ..+|++|+.+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY----SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec----ccceEEeeccceEEEeeCCC
Confidence 68999999999999999999999999999998765 444444 2367778877765 45899999999999999987
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
+.. -..+....-++++++|+- ++.+++.||.|-.|++-++.....
T Consensus 86 ~~~----------~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~------------------------ 130 (933)
T KOG1274|consen 86 GEE----------DTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ------------------------ 130 (933)
T ss_pred CCc----------cceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch------------------------
Confidence 543 223444567899999998 779999999999999999887652
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC-ccceeEE
Q 004290 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHV 285 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~v 285 (763)
.....+|..+|.++.|+|. +++||+.+-||.|++||+.++....++...... .+.. ...++.+
T Consensus 131 -~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~--------------n~~~~s~i~~~~ 194 (933)
T KOG1274|consen 131 -EKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD--------------NEFILSRICTRL 194 (933)
T ss_pred -heeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCcc--------------ccccccceeeee
Confidence 2233578899999999997 799999999999999999988655444221110 1111 2258889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 286 TFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 286 ~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+|+|+|..|+....|+.|++|+..+
T Consensus 195 aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999999999999999998877
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=186.91 Aligned_cols=245 Identities=20% Similarity=0.316 Sum_probs=184.5
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
.++|.+++-+|+|.+|+.|...+.|++|.+.+|..+..+ .+|-..|+|+.|+-+ +.+|+||+.||.|.+|.+...-.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence 468999999999999999989999999999999999888 899999999999999 89999999999999999864211
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
.. ......++..+..|.-+|+++...+. -...++|+|.|.++++||+..+..+ ...
T Consensus 158 a~-~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lti-------- 214 (476)
T KOG0646|consen 158 AD-NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LTI-------- 214 (476)
T ss_pred cc-cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EEE--------
Confidence 11 11134678999999999999998873 1247889999999999999988643 111
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc--cCCC-CCCCCcccccccccccCCCCCc-cceeE
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--CQKR-MSPPPCVNYFCPMHLSEHGRSS-LHLTH 284 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~i~~ 284 (763)
.-...+++++.+|. ...+++|+.+|.|.+.++........ .... .......+ ...||.+ ..|+|
T Consensus 215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-------~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-------VLVGHENESAITC 282 (476)
T ss_pred ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceee-------eeccccCCcceeE
Confidence 01357899999997 68999999999999998876542100 0000 00000011 1134554 46999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
++++-||..|++|+.||.|.+||+.+............+++-+.+.|.
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999999999999999999985433333324455555666554
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.1e-22 Score=207.62 Aligned_cols=216 Identities=23% Similarity=0.393 Sum_probs=183.3
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
.++-+.++.+|. +.+...+..|.+|..+|.+|.|+++..+|+.|+.+|+|++||++..+.++++ .+|...+.++.|+
T Consensus 45 ~Gg~~~k~~L~~--i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 45 TGGEDEKVNLWA--IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFH 121 (825)
T ss_pred cCCCceeecccc--ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeec
Confidence 344556666665 6666777789999999999999999999999999999999999999999998 8999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|. +.++++|+.|+.+++||.+. ..|...+.+|...|..++|+| ++.+++++++|.+++|||+..++.
T Consensus 122 P~--~~~~a~gStdtd~~iwD~Rk----------~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 122 PY--GEFFASGSTDTDLKIWDIRK----------KGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL 188 (825)
T ss_pred cc--eEEeccccccccceehhhhc----------cCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccc
Confidence 99 79999999999999999996 245888999999999999999 779999999999999999988863
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
+..+..|...+.++.|+|. ..+++.|+.|+++++||+++.+.+....
T Consensus 189 -------------------------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~------- 235 (825)
T KOG0267|consen 189 -------------------------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK------- 235 (825)
T ss_pred -------------------------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC-------
Confidence 3445567888999999997 5789999999999999999765443221
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~ 301 (763)
.. ...|.+++|.|+++.+++|....
T Consensus 236 -------------~~-~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 -------------PE-TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -------------Cc-cCCceeeeecCCceeeecCchhh
Confidence 11 22599999999999888776543
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=183.18 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=158.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEECCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~~ 126 (763)
.++|++|.|+|...+|++|+.|++++||.+... ..++.+ .-...+|.+++|.|+ |. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeeccc
Confidence 578999999999999999999999999988643 355555 345789999999999 56 899999999999999987
Q ss_pred CCCCCCCCCCCCCceeeeccc-CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290 127 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
.+- ..+....++. ..+.....+| ++++|+..|..|.|.+....+++.+..
T Consensus 290 ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s-------------------- 340 (514)
T KOG2055|consen 290 AKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITS-------------------- 340 (514)
T ss_pred ccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhhe--------------------
Confidence 543 2234444443 4567778889 568999999999999999888774410
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v 285 (763)
-...+.|..++|+.+ ++.|++++.+|.|.+||++....+..+.. .|. ..-+++
T Consensus 341 ------~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf~D------------------~G~--v~gts~ 393 (514)
T KOG2055|consen 341 ------FKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRFVD------------------DGS--VHGTSL 393 (514)
T ss_pred ------eeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEEee------------------cCc--cceeee
Confidence 012467899999987 68899999999999999998654433311 111 135788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 286 TFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 286 ~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.+++|.||++|+..|.|.|||.++
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eecCCCceEEeccCcceEEEeccch
Confidence 8999999999999999999999877
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=3.8e-19 Score=185.01 Aligned_cols=228 Identities=12% Similarity=0.162 Sum_probs=152.7
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
...+..+.+|+ ..+.+.+..+.+|.. +.+++|+|+|+.| ++++.++.|++||..+++.+..+ ..+. .+..+.|+
T Consensus 7 ~~~d~~v~~~d--~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~~ 81 (300)
T TIGR03866 7 NEKDNTISVID--TATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFALH 81 (300)
T ss_pred ecCCCEEEEEE--CCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEEC
Confidence 34466788887 345567778876654 7889999999876 57778999999999999887777 3343 35678999
Q ss_pred eCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCC
Q 004290 103 PETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQG 180 (763)
Q Consensus 103 p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~ 180 (763)
|+ ++.+ ++++.++.|++||+.+. ..+..+. +...+.+++|+| ++.++++++.++ .+.+||.++.
T Consensus 82 ~~--g~~l~~~~~~~~~l~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 82 PN--GKILYIANEDDNLVTVIDIETR----------KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred CC--CCEEEEEcCCCCeEEEEECCCC----------eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCC
Confidence 99 5655 45567899999999862 2233343 234568899999 567777777765 4677898765
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE-EEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~-sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
+.. ..+. ....+.+++|+|+ +.+|+ ++..++.|++||+++++.+..+.....
T Consensus 148 ~~~-----------~~~~---------------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 148 EIV-----------DNVL---------------VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred eEE-----------EEEE---------------cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 421 0000 0123457899998 56664 555699999999998765433211000
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 004290 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHA 311 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~~ 311 (763)
... ........++|+|++++++++ +.++.|.+||+.++
T Consensus 201 -----------~~~---~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 201 -----------GVH---PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred -----------ccc---cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 000 001124568899999986665 45778999998763
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=194.36 Aligned_cols=213 Identities=15% Similarity=0.235 Sum_probs=167.4
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
.-+|++++.+|+|++||+|..-|.++|+++..-+.+..+ ..|...|.|+.|+. .-...+|++++.|+.|+|+|+...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn- 536 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN- 536 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-
Confidence 456999999999999999999999999999998888888 79999999999984 322578999999999999999863
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
..+++++.+|...|+++.|.-.+. ..+++++.|+.|.+ +......-. ..+ .
T Consensus 537 --------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g----------~~f---------~ 588 (1080)
T KOG1408|consen 537 --------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG----------RLF---------P 588 (1080)
T ss_pred --------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc----------eec---------c
Confidence 356889999999999999987443 46889999988754 333211000 000 0
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
-.........++.++..|. .+++++++.|..|+|||+.+++....|... ++|.+ ..-.|..
T Consensus 589 r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv~l 649 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKVIL 649 (1080)
T ss_pred ccccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEEEE
Confidence 0011123456889999997 689999999999999999999866554321 34544 4778999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC
Q 004290 288 SPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|.|.||++++.|.++.++|..++
T Consensus 650 DPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 650 DPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred CCCccEEEEeecCCceEEEEeccc
Confidence 999999999999999999998885
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.4e-21 Score=208.65 Aligned_cols=209 Identities=17% Similarity=0.266 Sum_probs=149.4
Q ss_pred EEEEeCCCCC-EEEEE----------eCCCcEEEEeCCC--Ce----EEEEEccCCCCceEEEEEeeCCCCc--EEEEEe
Q 004290 54 NAISWNSKGS-LLISG----------SDDTHINVWSYSS--RK----LLHSIETGHSANVFCTKFVPETSDE--LVVSGA 114 (763)
Q Consensus 54 ~~l~fsp~g~-~Lasg----------s~D~~v~iWd~~~--~~----~~~~~~~~h~~~V~~v~~~p~~~~~--~l~s~s 114 (763)
..++|+|.+. +||+| +.+.++-||.+.. .. .+..+ ......+.++|.+.+++. +|+.|.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeeccc
Confidence 4578999886 56554 3345566665542 22 22333 234567899999984221 599999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.||.|.+||..... ...+...+.....|.+.|..+.|++..++++++|+.||.|.|||+.+.+......
T Consensus 88 edG~I~ly~p~~~~----~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------- 156 (1049)
T KOG0307|consen 88 EDGNIVLYDPASII----ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------- 156 (1049)
T ss_pred cCCceEEecchhhc----cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-------
Confidence 99999999998620 1112355777889999999999999888899999999999999999865331110
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
.......|.+++|+.....+|++++.+|++.|||+|..+.+..+..
T Consensus 157 ----------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~------------------ 202 (1049)
T KOG0307|consen 157 ----------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD------------------ 202 (1049)
T ss_pred ----------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc------------------
Confidence 1123567999999987778999999999999999998765543321
Q ss_pred CCCCccceeEEEEcCCC-CEEEEEeCCC---eEEEEECCC
Q 004290 275 HGRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNH 310 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg-~~l~~~s~d~---~i~iwd~~~ 310 (763)
.+.+ ..+..|+|+|+. ..|++++.|. .|.+||++.
T Consensus 203 ~~~~-~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 203 TPGR-MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred CCCc-cceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 1111 258899999986 4566666643 789999877
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.5e-20 Score=183.60 Aligned_cols=234 Identities=19% Similarity=0.274 Sum_probs=180.4
Q ss_pred cccccccccchhhhhc-ccccee------------------eccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCe
Q 004290 24 PDVNHSLQMHSSLVRR-LSQERE------------------LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK 83 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~~------------------l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~ 83 (763)
+.++..|.||+..+.. ..+... -.+|++.|.+|+|+.+ .+.|||||.|.+|++||+.+++
T Consensus 198 Gtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~ 277 (463)
T KOG0270|consen 198 GTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK 277 (463)
T ss_pred eccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC
Confidence 3467788888854422 222222 2379999999999875 4689999999999999999999
Q ss_pred EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004290 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (763)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 163 (763)
+..++ ..|.+.|.+++|+|.. ...|++|+.|++|.+.|.+.... .-..++ ..+.|-.++|.|.....|
T Consensus 278 p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~---------s~~~wk-~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 278 PKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSN---------SGKEWK-FDGEVEKVAWDPHSENSF 345 (463)
T ss_pred cceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccc---------cCceEE-eccceEEEEecCCCceeE
Confidence 99998 6899999999999986 89999999999999999995321 112222 457899999999888899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (763)
Q Consensus 164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw 243 (763)
+++..||+|+-+|+|.... .++....|...|.++++++..+.++++++.|+.|++|
T Consensus 346 ~~~tddG~v~~~D~R~~~~------------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGK------------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred EEecCCceEEeeecCCCCC------------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 9999999999999998753 2444557889999999999889999999999999999
Q ss_pred eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCE-EEEEeCCCeEEEEECCCCC
Q 004290 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~-l~~~s~d~~i~iwd~~~~~ 312 (763)
++..-.+.... .+...-+...|.++.|+-.+ |+.|+..+.+++||+.+..
T Consensus 402 ~~~~~~~~~v~-------------------~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 402 KFDVDSPKSVK-------------------EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eecCCCCcccc-------------------cccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99854421111 11111113566677776554 5566667889999998854
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.8e-18 Score=176.71 Aligned_cols=254 Identities=14% Similarity=0.209 Sum_probs=192.5
Q ss_pred cccccccccchhhhhccccceeecccc-CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
.+.+..|.||. ....+-+..++.|+. ..|.+++|+ ++..|+|.+.+|.|.-||+.+++.+..+ ....+.|++++.+
T Consensus 43 sRt~g~IEiwN-~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~ 119 (691)
T KOG2048|consen 43 SRTDGNIEIWN-LSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAIN 119 (691)
T ss_pred eccCCcEEEEc-cCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeC
Confidence 45677888887 334667788888875 579999999 4556889999999999999999999998 7888999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|. +..++.|+.||.+..++..... .+....+...+++|.+++|+| ++..+++|+.||.|++||+.++..
T Consensus 120 p~--~~~l~IgcddGvl~~~s~~p~~--------I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 120 PE--NTILAIGCDDGVLYDFSIGPDK--------ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred Cc--cceEEeecCCceEEEEecCCce--------EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCce
Confidence 99 6999999999977777776522 233445556679999999999 557789999999999999998763
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
. .+.+..... -......-|+++.|-.+ ..|++|.+-|+|.+||...+..+..+
T Consensus 189 ~------------~~~~~~~d~-----l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~-------- 241 (691)
T KOG2048|consen 189 L------------HIITMQLDR-----LSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH-------- 241 (691)
T ss_pred E------------EEeeecccc-----cccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh--------
Confidence 2 111111110 00113456788888865 59999999999999999988765443
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccc----eEeecCCCCeeeeecc
Q 004290 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA----MRYTVGDASKIMSFTP 331 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~p 331 (763)
.-|.. .|.+++..+++.++++++.|+.|..|...+.+... ....+++.++.++..+
T Consensus 242 ------------~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 242 ------------SCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred ------------hhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 11333 59999999999999999999999999888865422 2333455566666554
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.5e-19 Score=165.75 Aligned_cols=259 Identities=16% Similarity=0.215 Sum_probs=179.3
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
.+|.+-|+++.|.+-|+.+|+|+.|++|+|||.... .+.... ..|.+.|..+.|.+..-|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 479999999999999999999999999999997533 344455 689999999999765459999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCC-------------CCCC
Q 004290 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCP-------------PAGS 188 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~-------------~~~~ 188 (763)
.-...+..+ ....+....++..-...|++|.|.|.. +-.+++++.||.+|||+.-...... ....
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 864322111 011234456677778899999999943 4578999999999999876543220 0000
Q ss_pred CCc---------------------------ccceEEEecCCCc--eeeccCCCCCccceEEEEEeCCCC---cEEEEEeC
Q 004290 189 SHQ---------------------------ECRNILLDLRCGA--KRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS 236 (763)
Q Consensus 189 ~~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~---~~l~sgs~ 236 (763)
.+. -....++....+. -..+...++++.+|++|+|.|.-| .+||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 011 1123344433333 234567788999999999999643 47999999
Q ss_pred CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC-CCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|| |+||.+....... .......+.....+....+.. .+|.+ .|..+.|.-.|..|.+.+.||+|++|..+-
T Consensus 248 Dg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 9999998532110 000001111111111111222 34554 699999999999999999999999997765
No 147
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=5.7e-20 Score=169.09 Aligned_cols=229 Identities=12% Similarity=0.133 Sum_probs=142.2
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
.+...|++|.+.|+++.|-.++. |.+|..-|.|++|++.+.+.+..+...|...|+.+.-.|+ ..+.+-+.|..+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLI 80 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEE
Confidence 46678899999999999987766 8899999999999999998887773367888999988886 6889999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+|++... .....|.-.++++.|.+. -+...+... ..-.++-+..... ........++..+.+
T Consensus 81 lw~ia~s-------------~~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~-h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 81 LWTIAYS-------------AFISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDET-HKQDGGDTTQVQIAD 143 (323)
T ss_pred EEEccCc-------------ceEEEeeeeccccccccc---eeccCCCcchhheecCCcccchh-hhhccCccceeEccC
Confidence 9999852 223446666777777652 122222211 1112222211110 000001111111111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCc--EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPH--LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
-. .....+.+++..+....+. ++++|-.+|.+.+||+.++..+..+...- +.......|
T Consensus 144 d~---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~----------kv~~~~ash 204 (323)
T KOG0322|consen 144 DS---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS----------KVESPNASH 204 (323)
T ss_pred ch---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc----------ccccchhhc
Confidence 11 1123456777765443333 56788899999999999875443332110 000111224
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.. +|.++.|.+.-..=++++.+..+..|+++.
T Consensus 205 ~q-pvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 205 KQ-PVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred cC-cceeeeechhhcCCcCCCccccceeeeecc
Confidence 44 699999887655556677777777777765
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=180.53 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=161.0
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC-CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
-..+|.+|||+.+.+.||.+-.||.|-||++...-....+..+ ....|.+++|++. ..|++.+.+|.|.-||+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecccC
Confidence 3578999999999999999999999999999987544433244 4578999999954 68899999999999999973
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
++...+....+.|.+|+.+| ....++.|+.||.++.++...++.. +
T Consensus 101 ----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~--------------~--------- 146 (691)
T KOG2048|consen 101 ----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT--------------Y--------- 146 (691)
T ss_pred ----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE--------------E---------
Confidence 44667777889999999999 5588889999998887877665421 1
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
-..+...+..|.+++|+|+ +..+++|+.||.|++||..+++.+...... ...+. .+ ...-|++|.|
T Consensus 147 ~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-----------~d~l~-k~-~~~iVWSv~~ 212 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQ-----------LDRLS-KR-EPTIVWSVLF 212 (691)
T ss_pred EeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeec-----------ccccc-cC-CceEEEEEEE
Confidence 1112234678999999998 678999999999999999988755411100 00000 11 2224899999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC
Q 004290 288 SPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
-.++. |++|..-|+|.+||...+
T Consensus 213 Lrd~t-I~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 213 LRDST-IASGDSAGTVTFWDSIFG 235 (691)
T ss_pred eecCc-EEEecCCceEEEEcccCc
Confidence 87765 899999999999998774
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.1e-19 Score=184.26 Aligned_cols=236 Identities=21% Similarity=0.317 Sum_probs=168.5
Q ss_pred chhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--------CeEEEEEccCCCCceEEEEEeeC
Q 004290 33 HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------RKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 33 ~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--------~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
.+++.+++.+-.+++.|.++|+.++|.|....|++++.|++|++|+++. -+.+.+| .+|.++|.|+++.++
T Consensus 277 k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 277 KKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN 355 (577)
T ss_pred hhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC
Confidence 3456667777779999999999999999999999999999999999932 2467888 799999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCCCCCCC-CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDN-AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+..+++|+.||+|+.|++. ......+.. .......+.||.+.|+.+++++ ....|++++.||++++|+......+
T Consensus 356 --~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~ 431 (577)
T KOG0642|consen 356 --GEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPC 431 (577)
T ss_pred --ceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCcc
Confidence 7999999999999999876 322221111 1123467889999999999998 5577889999999999998776542
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
.. ..+.......++.|-.......++...-+.--++++...+.+..+.....+.
T Consensus 432 ~f------------------------~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~-- 485 (577)
T KOG0642|consen 432 TF------------------------GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG-- 485 (577)
T ss_pred cc------------------------CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc--
Confidence 11 0111122234555544333344444444555555555554443332211111
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
......++.|.++|.+...+++..|+.|+++|..++
T Consensus 486 ------------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 486 ------------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred ------------ccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 011125889999999999999999999999998874
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=6.7e-20 Score=176.77 Aligned_cols=228 Identities=18% Similarity=0.271 Sum_probs=169.5
Q ss_pred hccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEE---EEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+..+++.++.+|.+.=.+|+|||-. ..|+||.--+.|++|...++.-. ..| .+|+..|..++|+|.. ...|+||
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence 5568899999999999999999932 24788888889999999887532 234 5799999999999986 7899999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
|.||+|+|||++.+.. .+....++|.+.|+.|.|+-..+ +|++|+.||+++|||+|+-+.-
T Consensus 277 S~DgsIrIWDiRs~~~--------~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~---------- 337 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPK--------KAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG---------- 337 (440)
T ss_pred ecCceEEEEEecCCCc--------cceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------
Confidence 9999999999997532 22344489999999999998554 9999999999999999987622
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
..+..+..|..+|++|.|+|.....|++++.|..|.|||+.............. ..++...|.-+.
T Consensus 338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~--~~L~dlPpQLLF 403 (440)
T KOG0302|consen 338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA--EGLQDLPPQLLF 403 (440)
T ss_pred ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc--cchhcCCceeEE
Confidence 234555678999999999998888999999999999999975443111111000 012222222222
Q ss_pred CC-CCCccceeEEEEcCCCC-EEEEEeCCCe
Q 004290 274 EH-GRSSLHLTHVTFSPNGE-EVLLSYSGEH 302 (763)
Q Consensus 274 ~~-g~~~~~i~~v~~spdg~-~l~~~s~d~~ 302 (763)
-+ |.. .|..|.|++.-. +|++.+.||.
T Consensus 404 VHqGQk--e~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred Eecchh--HhhhheeccCCCCeEEEecccce
Confidence 22 222 388899998654 5566666764
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7.8e-19 Score=165.66 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=187.7
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
-+..+++++.... .+...|+ |..++.+++|.+ ...+++|+.||.|+++|+.++..... ..|..+|.|+.+++.
T Consensus 33 WDgslrlYdv~~~--~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~- 105 (323)
T KOG1036|consen 33 WDGSLRLYDVPAN--SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYE- 105 (323)
T ss_pred ccCcEEEEeccch--hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee--ccCCCceEEEEeecc-
Confidence 4566677764333 3334444 889999999987 55688999999999999998876543 579999999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
...+++|++|++|++||.+... +...+. ....|.++... ++.|+.|+.|..|.+||+|+.....+
T Consensus 106 -~~~vIsgsWD~~ik~wD~R~~~----------~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 106 -VGCVISGSWDKTIKFWDPRNKV----------VVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred -CCeEEEcccCccEEEEeccccc----------cccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhh
Confidence 6899999999999999999621 233333 33478888874 47888999999999999998763311
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
. ....-...+.|+++.|. +.-+++++-||.|.+=.+...+..... ....+|-+
T Consensus 171 ~-----------------------reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~sk---kyaFkCHr 223 (323)
T KOG1036|consen 171 R-----------------------RESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSK---KYAFKCHR 223 (323)
T ss_pred h-----------------------ccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhh---ceeEEeee
Confidence 0 11123567899999995 667899999999887666543211100 00001111
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (763)
.. .....--.+|++++|+|-...|++|+.||.|.+||+.+.+...........+..++|+-++..+++....
T Consensus 224 ~~-----~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 224 LS-----EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred cc-----cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 10 0001112379999999999999999999999999999966554444445668889999888877766553
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5.6e-19 Score=167.58 Aligned_cols=226 Identities=15% Similarity=0.211 Sum_probs=162.7
Q ss_pred eccccCceEEEEeCC-----CCCEEEEEeCCCcEEEEeCCCCe---EEEEEcc-CCCCceEEEEEeeCCC--CcEEEEEe
Q 004290 46 LEGHQGCVNAISWNS-----KGSLLISGSDDTHINVWSYSSRK---LLHSIET-GHSANVFCTKFVPETS--DELVVSGA 114 (763)
Q Consensus 46 l~gH~~~V~~l~fsp-----~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~-~h~~~V~~v~~~p~~~--~~~l~s~s 114 (763)
.++|+.+|..++|++ +...+|+++. ..+.|+...... .++.+.. .|....+.++|+-+.+ ..++|.|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999996 3356777766 488999887543 3333322 3778889999987653 46889999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.-|.|+|.|+... ++...+.+|.+.|+.|.++|..++++++++.|.+|++|++++..++
T Consensus 113 ~~GvIrVid~~~~----------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv----------- 171 (385)
T KOG1034|consen 113 YLGVIRVIDVVSG----------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV----------- 171 (385)
T ss_pred ceeEEEEEecchh----------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-----------
Confidence 9999999999973 4477889999999999999999999999999999999999987632
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC--CCCCCccccc-----
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--MSPPPCVNYF----- 267 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~----- 267 (763)
. .+....+|...|.++.|+++ +.+|++++.|..|++|++...+....+... ..+......|
T Consensus 172 ~-----------VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 172 A-----------VFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred E-----------EecccccccCcEEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 1 22334578899999999997 689999999999999999854422222110 0011111111
Q ss_pred -ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290 268 -CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 268 -~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
.|......-|+. .|-|+.|- |.++++-+-++.|.+|..
T Consensus 240 ~fp~fst~diHrn-yVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 240 HFPDFSTTDIHRN-YVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred ccccccccccccc-hHHHHHHH--hhheeecccCceEEEEec
Confidence 111111123444 47777774 578888888999999965
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=163.49 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=132.3
Q ss_pred EEEEeCCCCeEEEEE----ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290 74 INVWSYSSRKLLHSI----ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (763)
Q Consensus 74 v~iWd~~~~~~~~~~----~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (763)
.+-|+.......+.+ +.+|...|++++|+.+ |..|++++.|+.|++|+++....+. .++++.-. .-+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~e-----Hr~~R~nv-e~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKE-----HRCIRQNV-EYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhh-----hhHhhccc-cCCC
Confidence 455666554433222 3799999999999999 8999999999999999998532111 11222211 1235
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 229 (763)
.+.++|.|+-..+++++-...++++|-+...+-- ......+-+| .+.....|...+..+-.... +.
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG------~~~~~~v~~D-------~~~f~~kh~v~~i~iGiA~~-~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG------SGSHHFVHID-------NLEFERKHQVDIINIGIAGN-AK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccC------CCCccccccc-------ccccchhcccceEEEeecCC-ce
Confidence 6889999988788888888889999987765421 0000011111 12233456667777766664 78
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 230 ~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
+|++++.|..|.+|+++ |+.+..+..... .-+..+.||+|++|++++-.--|++|.+-
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~---------------------~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQS---------------------SNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred EEEEecCCCcEEEEecC-Cceeeeeccccc---------------------cccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 99999999999999999 776655432111 24557899999999999988889999765
Q ss_pred C
Q 004290 310 H 310 (763)
Q Consensus 310 ~ 310 (763)
-
T Consensus 259 f 259 (420)
T KOG2096|consen 259 F 259 (420)
T ss_pred e
Confidence 4
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=2e-18 Score=168.51 Aligned_cols=213 Identities=17% Similarity=0.283 Sum_probs=152.7
Q ss_pred cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCe---------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 50 ~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
..+|.++.|.++.. .||||+.|..|+||-+..+. .+..+ ..|...|+++.|+|+ |.+|+||+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence 46799999999776 99999999999999876421 22334 789999999999999 8999999999999
Q ss_pred EEEECCCCC------CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290 120 RLFNLSRFS------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 120 ~iwd~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
.+|-...-. ........+.....+.+|...|+.++|+| ++.++++++.|..+++||+..++..
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~---------- 158 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL---------- 158 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE----------
Confidence 999877210 00111122344567788999999999999 6689999999999999999998732
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC--------CCCCccc
Q 004290 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--------SPPPCVN 265 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~ 265 (763)
.....|...+..++|.|. .+++++=+.|...+++.+...+.+....... ......+
T Consensus 159 ---------------~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 159 ---------------AILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred ---------------eeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 223356778889999997 6899999999888888777655433222100 0011111
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s 298 (763)
.|....+ .. -...++|+|||.+|++..
T Consensus 223 LfhDeTl-----ks-FFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 223 LFHDETL-----KS-FFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecCch-----hh-hhhhcccCCCCcEEEccc
Confidence 1111101 11 256688999999888765
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.5e-18 Score=181.32 Aligned_cols=161 Identities=17% Similarity=0.300 Sum_probs=128.3
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..|...-+.++|.|+ |.+|++|+.||.|++|+...... .| ..+.-+...|.+++... ..|++|+.+
T Consensus 10 yaht~G~t~i~~d~~--gefi~tcgsdg~ir~~~~~sd~e--------~P-~ti~~~g~~v~~ia~~s---~~f~~~s~~ 75 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD--GEFICTCGSDGDIRKWKTNSDEE--------EP-ETIDISGELVSSIACYS---NHFLTGSEQ 75 (933)
T ss_pred hhccCceEEEEEcCC--CCEEEEecCCCceEEeecCCccc--------CC-chhhccCceeEEEeecc---cceEEeecc
Confidence 468888999999999 78999999999999999886321 11 12222777888888743 588899999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
++|.+|.+..++.- ..+. .-+.++++++|+.+ |+++|.|+.|-.|++-++....
T Consensus 76 ~tv~~y~fps~~~~-----------~iL~--------------Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 76 NTVLRYKFPSGEED-----------TILA--------------RFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSS 129 (933)
T ss_pred ceEEEeeCCCCCcc-----------ceee--------------eeeccceEEEEecC-CcEEEeecCceeEEEEeccccc
Confidence 99999998887622 0111 12467899999996 7899999999999999998765
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....+ .||.. +|.+|.|+|.+.+|++++.||.|++|++.++
T Consensus 130 ~~~~l--------------------rgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 130 QEKVL--------------------RGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred hheee--------------------cccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 43332 56766 6999999999999999999999999999985
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.9e-19 Score=176.85 Aligned_cols=264 Identities=18% Similarity=0.249 Sum_probs=197.7
Q ss_pred CCchhhhhhccccCC---Ccccccccccchhhhhc--cccceeecccc-CceEEEEeCCCCCEEEEEeCCCcEEEEeCCC
Q 004290 8 DGSIYDMLDTRHTDT---RPDVNHSLQMHSSLVRR--LSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSS 81 (763)
Q Consensus 8 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~l~gH~-~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~ 81 (763)
.++..++.+++.... +-.-++.+.+|...-+. +..+..+.|.. .+|.|..++ .++++|+..++|+|||++.
T Consensus 34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHH
Confidence 445667777766522 23356777777655442 33444455542 345555544 8999999999999999995
Q ss_pred CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCC
Q 004290 82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNP 160 (763)
Q Consensus 82 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~ 160 (763)
+.++.++.+|...|+++.++-. +.+|++++..|.|.|..+.++.. ...|... ...|+-+.|+|...
T Consensus 111 -kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~----------tt~f~~~sgqsvRll~ys~skr 177 (673)
T KOG4378|consen 111 -KLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQK----------TTTFTIDSGQSVRLLRYSPSKR 177 (673)
T ss_pred -HHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCcc----------ccceecCCCCeEEEeecccccc
Confidence 4444555899999999999988 79999999999999999987432 2334322 45667899999887
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
.+|.+++.+|.|.+||+....+. ......|..+...|+|+|.+..+|++.+.|..|
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPI------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcc------------------------cchhhhccCCcCcceecCCccceEEEecccceE
Confidence 88999999999999999876532 233345788889999999999999999999999
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc-ceEee
Q 004290 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYT 319 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~-~~~~~ 319 (763)
.+||.+.......+ .+ ..+.+.|+|+++|.+|++|...|.|+.||++..+.+ .....
T Consensus 234 ~~yD~~s~~s~~~l----------~y------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 234 NIYDIRSQASTDRL----------TY------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred EEeeccccccccee----------ee------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 99999965433221 11 115899999999999999999999999999986643 34555
Q ss_pred cCCCCeeeeeccCC
Q 004290 320 VGDASKIMSFTPTL 333 (763)
Q Consensus 320 ~~~~~~~~~~~p~~ 333 (763)
+...+..++|-|..
T Consensus 292 h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 292 HDASVTRVAFQPSP 305 (673)
T ss_pred cccceeEEEeeecc
Confidence 66778888887754
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8.8e-18 Score=160.51 Aligned_cols=199 Identities=14% Similarity=0.228 Sum_probs=151.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (763)
..+|++-..|.|++||..+++.+..| .++...++.++|......+.+.+|+.||+|++||++..... ....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~--------a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES--------ARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--------hhee
Confidence 57888888999999999999999999 89999999999998533789999999999999999975432 2445
Q ss_pred eeccc-CceeEEEEecCCCCEEEEEeC----CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc
Q 004290 143 YQCHT-RRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (763)
Q Consensus 143 ~~~h~-~~v~~l~~sp~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (763)
+..+. .+..+++... ..+++++|.. +-.|.+||+|..+... -.....|...
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD 167 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD 167 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence 55555 4566777665 4577777653 6789999999987420 1112357889
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEE
Q 004290 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL 296 (763)
Q Consensus 218 v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~ 296 (763)
|+++.|+|.++++|++||.||.|.+||+..-..-. ..+..+ .+.. .|..+.|..++ +.|.+
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD---------aL~~vi--------N~~s-SI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED---------ALLHVI--------NHGS-SIHLIGWLSKKYKRIMC 229 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchh---------hHHHhh--------cccc-eeeeeeeecCCcceEEE
Confidence 99999999999999999999999999997532110 001110 1222 49999999887 45888
Q ss_pred EeCCCeEEEEECCCCC
Q 004290 297 SYSGEHVYLMDVNHAG 312 (763)
Q Consensus 297 ~s~d~~i~iwd~~~~~ 312 (763)
-+..+...+|+++.+.
T Consensus 230 lTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGS 245 (376)
T ss_pred EEccCceeEEEccCCC
Confidence 9999999999999864
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=5.9e-18 Score=168.53 Aligned_cols=223 Identities=13% Similarity=0.204 Sum_probs=154.4
Q ss_pred cccccchhhhhccccceeeccc--cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEEEEe
Q 004290 28 HSLQMHSSLVRRLSQERELEGH--QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH--~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~ 102 (763)
.++++|+... +...-.+..| .-.|.++.|+.... ..|+.+.|+.+++|.-... +....- ......-+|++..
T Consensus 12 d~~kl~D~s~--~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 12 DKTKLSDFSD--LETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACA 88 (673)
T ss_pred CceEEeeccc--ccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhh
Confidence 4667777333 3222233323 23499999987664 2345567889999974432 221111 1112244555555
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
.. ..++++|+..+.|+|||++.. .+.+.+++|...|++|.++. ...+|++++..|.|.|..+.++..
T Consensus 89 s~--S~y~~sgG~~~~Vkiwdl~~k----------l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 89 SQ--SLYEISGGQSGCVKIWDLRAK----------LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred hc--ceeeeccCcCceeeehhhHHH----------HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc
Confidence 44 479999999999999999951 34677899999999999988 558999999999999999988763
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
.... ..+....|.-+.|+|....+|.+++.+|.|.+||+....++..+.
T Consensus 156 tt~f------------------------~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~------- 204 (673)
T KOG4378|consen 156 TTTF------------------------TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS------- 204 (673)
T ss_pred ccce------------------------ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-------
Confidence 3111 011233566889999877788999999999999998766543332
Q ss_pred cccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004290 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~ 310 (763)
..|.. +...|+|+|.. ..|++.+.|..|++||+..
T Consensus 205 ------------~~HsA-P~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 205 ------------EAHSA-PCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred ------------hhccC-CcCcceecCCccceEEEecccceEEEeeccc
Confidence 22444 68899999965 4566677799999999986
No 159
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=9.2e-18 Score=156.81 Aligned_cols=180 Identities=20% Similarity=0.294 Sum_probs=148.5
Q ss_pred ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC-CcEEEEEeCCCcEEEEEC
Q 004290 47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 47 ~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~~l~s~s~dg~I~iwd~ 124 (763)
.+|+..|.++.|-| |..++.+++.|.+++|||..+-+....| ...+.|.+-+++|-.. -.++++|..|-.|++-|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 57899999999999 5668889999999999999998888777 4678899999998532 246778888999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
..+ .+.+.+.+|.+.|.++.|+|.....|+||+.||.|++||+|...-+ ....|.+...
T Consensus 176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-----------f~~lD~hn~k 234 (397)
T KOG4283|consen 176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-----------FRVLDQHNTK 234 (397)
T ss_pred cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-----------eEEeecccCc
Confidence 974 3478999999999999999988889999999999999999987533 2223333322
Q ss_pred e-eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290 205 K-RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 205 ~-~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
. ..+...+.|.+.|+.++|..+ +.++++.+.|..+++|+..++..
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCcc
Confidence 2 234446788999999999997 78999999999999999998863
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.3e-18 Score=168.82 Aligned_cols=202 Identities=18% Similarity=0.281 Sum_probs=159.0
Q ss_pred EEEEeCC-------CCCEEEEEeCCCcEEEEeCCCCeE--------------E-----E-EEccCCCCceEEEEEeeCCC
Q 004290 54 NAISWNS-------KGSLLISGSDDTHINVWSYSSRKL--------------L-----H-SIETGHSANVFCTKFVPETS 106 (763)
Q Consensus 54 ~~l~fsp-------~g~~Lasgs~D~~v~iWd~~~~~~--------------~-----~-~~~~~h~~~V~~v~~~p~~~ 106 (763)
.|++|.. -|+++|.|..|..|.|||+.-... . + ....+|+..|.++.|+...
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~- 255 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF- 255 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc-
Confidence 4666643 368999999999999999852110 0 0 0114799999999999875
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
.+.|+|||.|.+|++||+.++ +|..++..|.+.|.++.|+|..+.++++|+.|++|.+.|.|.....
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--- 322 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--- 322 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---
Confidence 789999999999999999984 4577888899999999999999999999999999999999974422
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCccc
Q 004290 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVN 265 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 265 (763)
...|. -.+.|-.++|+|.....++++..||+|+-+|+|... ++.++
T Consensus 323 --------~~~wk--------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~----------- 369 (463)
T KOG0270|consen 323 --------GKEWK--------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL----------- 369 (463)
T ss_pred --------CceEE--------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-----------
Confidence 12221 135678899999888999999999999999999752 22222
Q ss_pred ccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~~ 312 (763)
..|.. .|.+|++++.- .+|++++.|+.|++|++....
T Consensus 370 ---------~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 370 ---------KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ---------EeccC-CcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 44666 69999999865 457778889999999997743
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.4e-17 Score=155.23 Aligned_cols=237 Identities=17% Similarity=0.270 Sum_probs=174.2
Q ss_pred hccccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEc----cCCCCceEEEEEeeCCCCcEEE
Q 004290 38 RRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELVV 111 (763)
Q Consensus 38 ~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~-~~~~~----~~h~~~V~~v~~~p~~~~~~l~ 111 (763)
.+++++..|. .|-+.|.|+.|.|++..||+-. |..|.+|+++.+.. +..+. .+|....++-+|+|..+++.++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3456666665 6778999999999999998876 78999999988765 33332 2456678899999976688888
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004290 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 191 (763)
+.+ |+++..||+++... ....-.+|...|..|.|+|+...+|+||+.||.|++||.|..+.
T Consensus 189 tt~-d~tl~~~D~RT~~~---------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--------- 249 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKK---------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--------- 249 (370)
T ss_pred EeC-CCcEEEEEccchhh---------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---------
Confidence 875 89999999997431 13334679999999999998888999999999999999998763
Q ss_pred ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC----CCC----Cc
Q 004290 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM----SPP----PC 263 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~----~~~----~~ 263 (763)
.+...++|.-.|.++.|+|...+++++|++|..|.+|.......-..+.... .+. +-
T Consensus 250 ---------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 250 ---------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER 314 (370)
T ss_pred ---------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence 3566678899999999999888899999999999999887544222111110 000 01
Q ss_pred ccccccccccC-CCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 004290 264 VNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (763)
Q Consensus 264 ~~~~~~~~~~~-~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~ 310 (763)
++.+..+.+.. ..|.. .|.+++||.-..+++++ +.||.+.|=.+..
T Consensus 315 ~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 315 VKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 11111111211 23555 59999999877776655 5699998876654
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.2e-18 Score=187.78 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=187.9
Q ss_pred cccCCCcccccccccchhhhhcc----ccceeeccccCceEEEEeCCCCCE----EEEEeCCCcEEEEeCCC---C---e
Q 004290 18 RHTDTRPDVNHSLQMHSSLVRRL----SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSS---R---K 83 (763)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~gH~~~V~~l~fsp~g~~----Lasgs~D~~v~iWd~~~---~---~ 83 (763)
..++.+.+.+.++.++......- +++..+.. ....+.|+|.+.|.. ||.|.+||.|.+||... + .
T Consensus 29 q~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~ 107 (1049)
T KOG0307|consen 29 QQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE 107 (1049)
T ss_pred hccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH
Confidence 34455555666667766544443 35555543 456899999997754 89999999999999865 2 2
Q ss_pred EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee-eecccCceeEEEEecCCCCE
Q 004290 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~ 162 (763)
.+.+. ..|.+.|..+.|++.. +++|++|+.||.|.|||+...+. +... -..-.+.|.+|+|+....++
T Consensus 108 ~la~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~t---------P~~~~~~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 108 VLATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPET---------PFTPGSQAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred HHhhh-cccCCceeeeeccccC-CceeeccCCCCcEEEeccCCcCC---------CCCCCCCCCcccceEeccchhhhHH
Confidence 34444 6899999999999996 77999999999999999997431 1111 12246789999999888889
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---Cc
Q 004290 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AF 239 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~ 239 (763)
|++++.+|.+.|||+|..+.+..... . .....+..++|+|++...+++++.| -.
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~ls~----------------------~-~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKLSD----------------------T-PGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred hhccCCCCCceeccccCCCccccccc----------------------C-CCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 99999999999999999865421111 1 1124577899999988888888876 45
Q ss_pred EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCCCccceEe
Q 004290 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (763)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~~~~~~~~ 318 (763)
|.+||+|.-. ..++.+ .+|.. .|.++.|++.+ ++|++++.|+.|.+|+.++++......
T Consensus 234 iqlWDlR~as------------sP~k~~-------~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 234 IQLWDLRFAS------------SPLKIL-------EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eEeecccccC------------Cchhhh-------ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 9999998532 112222 45665 49999999966 888899999999999999966443333
Q ss_pred ecCCCCeeeeeccCCC
Q 004290 319 TVGDASKIMSFTPTLN 334 (763)
Q Consensus 319 ~~~~~~~~~~~~p~~~ 334 (763)
..+.=...+.|.|...
T Consensus 294 ~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNP 309 (1049)
T ss_pred CCCcceeeeeecCCCc
Confidence 3333344455665443
No 163
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=182.89 Aligned_cols=180 Identities=24% Similarity=0.361 Sum_probs=146.0
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004290 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 107 (763)
..+.....++++.+.++.|.||...|.|+.|...|.++++|+.|..|+||..+++.++... .||.+.|+.++.+.+ .
T Consensus 168 ~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n 244 (1113)
T KOG0644|consen 168 FSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--N 244 (1113)
T ss_pred eeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--h
Confidence 4555556788999999999999999999999999999999999999999999999999999 899999999999988 6
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 187 (763)
.++++++.|..|++|.+..+ .++..+.+|++.|++|+|+|. .+.+.||++++||.+-.-..
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~---- 305 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRI---- 305 (1113)
T ss_pred hhhhhcccCceEEEEecCCC----------chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccc----
Confidence 89999999999999999873 568899999999999999993 37889999999999821100
Q ss_pred CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
+..+ .. .......+.++.|... +..+++|+.|+.-+.|.+..
T Consensus 306 ----------y~pr-----p~--~~~~~~~~~s~~~~~~-~~~f~Tgs~d~ea~n~e~~~ 347 (1113)
T KOG0644|consen 306 ----------YVPR-----PL--KFTEKDLVDSILFENN-GDRFLTGSRDGEARNHEFEQ 347 (1113)
T ss_pred ----------cCCC-----CC--Ccccccceeeeecccc-ccccccccCCcccccchhhH
Confidence 0000 00 0011234556666664 67899999999888887653
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.7e-17 Score=161.22 Aligned_cols=231 Identities=17% Similarity=0.260 Sum_probs=167.6
Q ss_pred ceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290 43 ERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
.-.+.||+++|..++|+| +...|||||+|.+|.||++..+. .+..+ .+|...|.-++|+|.- .+.|++++
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag 151 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAG 151 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhcc
Confidence 345689999999999999 66789999999999999987542 34455 7999999999999986 78999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.|.+|.+||+.++.. +..+. |.+.|++|.|+- ++.+|+|.+.|+.|+|||.++++.....
T Consensus 152 ~Dn~v~iWnv~tgea----------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~-------- 211 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA----------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG-------- 211 (472)
T ss_pred CCceEEEEeccCCce----------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec--------
Confidence 999999999998532 44455 999999999998 7799999999999999999998743111
Q ss_pred eEEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEEe---CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004290 195 NILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sgs---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (763)
..|.+ .-..+.|-.+ +.++-+|. ++..+-+||..+...-..+ ..+
T Consensus 212 -----------------~~heG~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~el--- 260 (472)
T KOG0303|consen 212 -----------------VAHEGAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QEL--- 260 (472)
T ss_pred -----------------ccccCCCcceeEEecc-CceeeeccccccccceeccCcccccCccee----------EEe---
Confidence 11111 1223345554 55555553 5788999998876422111 000
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCc---cceEeecCCCCeeeeeccC
Q 004290 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~p~ 332 (763)
..+..|.---|.||...|+.++. |+.|+.|.+..... ....+...++.+.+.|.|.
T Consensus 261 ------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 261 ------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ------ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 11113555568899998887776 99999999988441 1223444566667777764
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=155.01 Aligned_cols=233 Identities=16% Similarity=0.265 Sum_probs=174.8
Q ss_pred cccCceEEEEeCCCC-----CEEEEEeCCCcEEEEeCCCC--eE-EEE-E----ccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290 48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSSR--KL-LHS-I----ETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 48 gH~~~V~~l~fsp~g-----~~Lasgs~D~~v~iWd~~~~--~~-~~~-~----~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
.|..+++.+.|.|+. .+|||.+. .+|||.+... +. ... + ...+..++++..|+.-. .++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 588999999999976 47887664 8999998732 11 111 1 13466899999999753 68999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
-|.+..|||++++.. ......+.+|...|+.|+|...+..+|+++|.||.|++||+|..+..
T Consensus 171 iDTTCTiWdie~~~~-------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------- 232 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS-------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------- 232 (364)
T ss_pred ccCeEEEEEEeeccc-------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence 999999999997511 12244567899999999999877789999999999999999987632
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
..+.+.+....++..++|++.+++++|+-..| ..|.|.|+|.-. ..+..
T Consensus 233 -----------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~------------tpva~------- 282 (364)
T KOG0290|consen 233 -----------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC------------TPVAR------- 282 (364)
T ss_pred -----------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC------------cceeh-------
Confidence 12233333356788999999999999987766 569999999632 11111
Q ss_pred CCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCCCc-----cceEeecCCCCeeeeeccC
Q 004290 274 EHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~p~ 332 (763)
.++|.. .|++++|.|. ...|.+++.|..+.+||+..... +...+..+..++.+.|+|.
T Consensus 283 L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 283 LRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred hhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence 156776 5999999995 56788999999999999987543 3344556777777888764
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-17 Score=162.63 Aligned_cols=237 Identities=10% Similarity=0.146 Sum_probs=176.1
Q ss_pred ccCCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEE--EEccCCC-C
Q 004290 19 HTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLH--SIETGHS-A 94 (763)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~--~~~~~h~-~ 94 (763)
.+...++.++.++|+.-.-++...++.+.--..+|.+++|.|+|. .+++++.-..+..||+++.+... .. .++. .
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~ 304 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEK 304 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC-CCcccc
Confidence 344457788999999988888888888887789999999999998 89999999999999999876433 22 3443 4
Q ss_pred ceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290 95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (763)
Q Consensus 95 ~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i 174 (763)
.+.....+|+ +++|+..+..|.|.+.-..++ +.+.+++ ..+.|..++|+. ++..|++++.+|.|.+
T Consensus 305 ~~e~FeVShd--~~fia~~G~~G~I~lLhakT~----------eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 305 SMERFEVSHD--SNFIAIAGNNGHIHLLHAKTK----------ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYV 370 (514)
T ss_pred hhheeEecCC--CCeEEEcccCceEEeehhhhh----------hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEE
Confidence 5677888999 689999999999999988873 3466665 678899999998 5577778888999999
Q ss_pred EECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
||++.... ...+.+ .....-++++.+++ +.+||+|+..|.|.|||..+.-.-
T Consensus 371 ~nl~~~~~-----------~~rf~D-------------~G~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~~s--- 422 (514)
T KOG2055|consen 371 WNLRQNSC-----------LHRFVD-------------DGSVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCFAS--- 422 (514)
T ss_pred EecCCcce-----------EEEEee-------------cCccceeeeeecCC-CceEEeccCcceEEEeccchhhcc---
Confidence 99998752 233332 11123357777786 789999999999999997753211
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC--CCeEEEEECCC
Q 004290 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNH 310 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~--d~~i~iwd~~~ 310 (763)
..|.++..+. .... .|++++|+||++.|+.+|. +..+++--+.+
T Consensus 423 ----~~PkPik~~d-------NLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 423 ----TNPKPIKTVD-------NLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ----CCCCchhhhh-------hhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 0111222210 0111 5999999999999988876 56666665544
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=7.6e-17 Score=165.91 Aligned_cols=176 Identities=18% Similarity=0.326 Sum_probs=135.0
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
+|+.++|-|||..|+.+..| .+.|||...|..+.++ .+|...|+|++|+.+ |..++||+.|+.|.+|+....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE---- 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE---- 85 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEeccccc----
Confidence 89999999999988877654 8999999999999999 899999999999999 899999999999999998741
Q ss_pred CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
-+..+ .|.+.|.||.|+| -.+.++|++- ...-+|........ .
T Consensus 86 -------G~LkY-SH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~V~---------------------------K 128 (1081)
T KOG1538|consen 86 -------GILKY-SHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKSVS---------------------------K 128 (1081)
T ss_pred -------ceeee-ccCCeeeEeecCc-hHHHhhhcch-hhccccChhhhhHH---------------------------h
Confidence 13333 5999999999999 5578888875 34667876544311 0
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
......+.+++|..+ |.+|+.|-.+|+|.|-+......+ . +...|..+.+|.+++|+|..
T Consensus 129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~-~------------------I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKV-K------------------IERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hhhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcce-E------------------EeCCCCCCCCceEEEecCCC
Confidence 012356889999997 799999999999998754322111 1 11123344479999999964
Q ss_pred C
Q 004290 292 E 292 (763)
Q Consensus 292 ~ 292 (763)
.
T Consensus 189 g 189 (1081)
T KOG1538|consen 189 G 189 (1081)
T ss_pred C
Confidence 3
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.4e-17 Score=151.58 Aligned_cols=269 Identities=14% Similarity=0.141 Sum_probs=184.0
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004290 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
.+-.+.++.||+ +.+....+.|.+|..+|.+++||+||++|+|+|.|..|++||+..|.+++.+ -..++|+.+.|+
T Consensus 40 vGc~nG~vvI~D--~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~h 115 (405)
T KOG1273|consen 40 VGCANGRVVIYD--FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWH 115 (405)
T ss_pred eeccCCcEEEEE--ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeec
Confidence 355688999999 5566688999999999999999999999999999999999999999999888 467899999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|.. .+..+..-.+..-.+-++..+...++- ...-..-.....+..|.+ .|+++++|...|.+.++|..+.+.
T Consensus 116 p~k-~n~~va~~~~~sp~vi~~s~~~h~~Lp------~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 116 PRK-RNKCVATIMEESPVVIDFSDPKHSVLP------KDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred ccc-CCeEEEEEecCCcEEEEecCCceeecc------CCCccccccccccccccC-CCCEEEEecCcceEEEEecchhee
Confidence 985 445555555555666666643221110 000000111122335777 779999999999999999988763
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCC-ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.. .+... ...|..+.|+-. +..|+.-+.|..||.|+++.......- ..+
T Consensus 188 va-------------------------s~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~---~e~- 237 (405)
T KOG1273|consen 188 VA-------------------------SFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRD---GEV- 237 (405)
T ss_pred ee-------------------------eeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCcc---CCc-
Confidence 20 00111 246778888875 789999999999999998843221100 000
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCccceEeec-CCCCeeeeeccCCCCcccC
Q 004290 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLNGLELQ 339 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~ 339 (763)
+....+... -...+..+++|+.+|.|+.+++. -..+|||....|.......+. |+..-.+.|+|....++..
T Consensus 238 e~~~K~qDv------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 238 EPEHKLQDV------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred ChhHHHHHH------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 001111000 11124788999999999998886 678999999987644444443 3556667788865555444
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.5e-16 Score=148.41 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=154.9
Q ss_pred eeeccccCceEEEEeCC-CCCEEEEEeCC-------CcEEEEeCCCC---------eEEEEEccCCCCceEEEEEeeCCC
Q 004290 44 RELEGHQGCVNAISWNS-KGSLLISGSDD-------THINVWSYSSR---------KLLHSIETGHSANVFCTKFVPETS 106 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp-~g~~Lasgs~D-------~~v~iWd~~~~---------~~~~~~~~~h~~~V~~v~~~p~~~ 106 (763)
+.|.-|.+.|..++-+| +.++|+|+-.+ ..+-||.+... +++..+...+-+.|.|+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-- 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-- 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC--
Confidence 45667889999999999 55677777542 24779988642 3444454456679999999998
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
+..+++-. |..|.+|++.......... +...-.+|....++-+|+| -+++.+++. .|+++..||+|+.+..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev----~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~-- 206 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEV----LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN-- 206 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheee----cccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh--
Confidence 67887776 8899999999755422100 0111123667788889999 455666554 5799999999987632
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
......|...|..+.|+|....+|++++.||.|||||.|+-+. .+.
T Consensus 207 ----------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~------------pv~ 252 (370)
T KOG1007|consen 207 ----------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF------------PVQ 252 (370)
T ss_pred ----------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc------------ccc
Confidence 1112346667899999998888999999999999999997431 111
Q ss_pred ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~ 310 (763)
.+ .+|.. +|.+|.|.|. .++|++++.|..|.+|...+
T Consensus 253 el-------~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 253 EL-------PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cc-------CCCce-EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 11 44555 7999999995 46788889999999997765
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.3e-16 Score=172.50 Aligned_cols=221 Identities=16% Similarity=0.265 Sum_probs=148.3
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
+..+.-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ....|+.+.+..+.+..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445678889998888999887789999999999998877322 2357899999877657899999999999999865
Q ss_pred CCC-CCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290 126 RFS-GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 126 ~~~-~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
... +....+..+..+... .+-.+.=.-+.|....+.++++ |.-..|+|||....+.+ .++..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~--------------~diP~- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVV--------------ADIPY- 1205 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeE--------------eeccc-
Confidence 432 111000011111111 1111222345787766655544 45789999999876533 22111
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc-cce
Q 004290 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHL 282 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i 282 (763)
+....|+++.-+-.+++.|++|..||.||+||.|+-..- ..+..+ +.|.. .+|
T Consensus 1206 ---------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------s~v~~~-------R~h~~~~~I 1259 (1387)
T KOG1517|consen 1206 ---------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------SLVCVY-------REHNDVEPI 1259 (1387)
T ss_pred ---------CCCccceeecccccCCceEEEeecCCceEEeecccCCcc----------ccceee-------cccCCcccc
Confidence 123456666666556899999999999999999975321 011111 12222 138
Q ss_pred eEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 004290 283 THVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 283 ~~v~~spdg~-~l~~~s~d~~i~iwd~~~ 310 (763)
..+.+.+.|- .|++|+.||.|++||++.
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 9999998764 499999999999999998
No 171
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=1.2e-17 Score=166.65 Aligned_cols=221 Identities=12% Similarity=0.145 Sum_probs=184.1
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004290 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
++...++.||+....+.+.-.+|..-.-.+.+|+.+||.++.+++..||.|.|||+.+...++.| +||...+.||..++
T Consensus 483 GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~ 561 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISK 561 (705)
T ss_pred ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecC
Confidence 44567899999888888888888877778999999999999999999999999999999999999 89999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+ |..|-+|+-|.+||.||++++.. +... .....|.++..+| .+.+++.|-+++.+.+......+..
T Consensus 562 d--GtklWTGGlDntvRcWDlregrq----------lqqh-dF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 562 D--GTKLWTGGLDNTVRCWDLREGRQ----------LQQH-DFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred C--CceeecCCCccceeehhhhhhhh----------hhhh-hhhhhheecccCC-CccceeeecccCcEEEEecCCccce
Confidence 9 89999999999999999997321 2211 2357899999999 6689999999999988877665421
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004290 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
....|...|.++.|.+. |+++++.+.|+.+..|...-+..+...
T Consensus 628 --------------------------qlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFqs--------- 671 (705)
T KOG0639|consen 628 --------------------------QLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS--------- 671 (705)
T ss_pred --------------------------eecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceeec---------
Confidence 01135667899999997 799999999999999998877654322
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
.....|.++.+|.|.+||++|+.|....+|.+
T Consensus 672 -------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 -------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 22235999999999999999999998888865
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.74 E-value=2.9e-17 Score=156.07 Aligned_cols=240 Identities=15% Similarity=0.190 Sum_probs=164.7
Q ss_pred cccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004290 48 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 48 gH~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
.|......++|+-+ ..+||.|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|.. .++++++|.|..|++|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEe
Confidence 37788888999753 358999999999999999999999888 8999999999999985 78999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC-----CCCCcccceEEE
Q 004290 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA-----GSSHQECRNILL 198 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~ 198 (763)
+++....+ ...-..+|.+.|.++.|++ ++.+|+++|.|.+|++|++...+....+ ......... +-
T Consensus 165 I~~~~Cv~-------VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p-fp 235 (385)
T KOG1034|consen 165 IQTDVCVA-------VFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP-FP 235 (385)
T ss_pred ccCCeEEE-------EecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc-CC
Confidence 99743211 1344578999999999999 5679999999999999999855422000 000000000 00
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCC-cccccccccccCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPP-CVNYFCPMHLSEHG 276 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 276 (763)
. ..-+.....+...|...|.|+.|- ++++++-+-++.|..|..- ..+.+... .|++ +...+... .
T Consensus 236 t-~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~v----kp~es~~Ti~~~~-----~ 302 (385)
T KOG1034|consen 236 T-PKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNV----KPPESATTILGEF-----D 302 (385)
T ss_pred c-cccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhcc----CCCccceeeeeEe-----c
Confidence 0 000000111334577788888886 4689999999999999883 32222211 1111 11111000 1
Q ss_pred CCccceeEEE--EcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 277 RSSLHLTHVT--FSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 277 ~~~~~i~~v~--~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.....|+-+. |.|-+++|+.|...|.|++||+...
T Consensus 303 ~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 1122355554 5577899999999999999999884
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.5e-15 Score=157.89 Aligned_cols=239 Identities=19% Similarity=0.253 Sum_probs=182.5
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEc-------------
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE------------- 89 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g---~~Lasgs~D~~v~iWd~~~~~~~~~~~------------- 89 (763)
+...++++. ..+..+++.|.+|..+++.+.+.|.. .++.+++.||.|++||...+..++++.
T Consensus 35 ~~~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~ 112 (792)
T KOG1963|consen 35 TGNFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPA 112 (792)
T ss_pred eCCEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechh
Confidence 345677766 66778888999999999999998854 467799999999999988776655542
Q ss_pred --------------------------------------------------------------------------------
Q 004290 90 -------------------------------------------------------------------------------- 89 (763)
Q Consensus 90 -------------------------------------------------------------------------------- 89 (763)
T Consensus 113 ~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~ 192 (792)
T KOG1963|consen 113 QADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT 192 (792)
T ss_pred HhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc
Confidence
Q ss_pred ---------cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004290 90 ---------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 90 ---------~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
..|...+++.+++|+ ++++++|..||.|.+|.--..+.. ......+.-|...|++++|++ ++
T Consensus 193 ~~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~-~G 263 (792)
T KOG1963|consen 193 KHTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSS-DG 263 (792)
T ss_pred eeeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEec-CC
Confidence 245666889999999 799999999999999975531111 123566778999999999999 66
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004290 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
.+|+|||..|.+.+|-+.+++.. ..|.-..+|..+.++|+ +.+.++...|+.|
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~kq--------------------------fLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI 316 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGKKQ--------------------------FLPRLGSPILHIVVSPD-SDLYSLVLEDNQI 316 (792)
T ss_pred ceEeecccceEEEEEeecCCCcc--------------------------cccccCCeeEEEEEcCC-CCeEEEEecCceE
Confidence 88999999999999999988621 22344678999999997 7899999999999
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+-.+.+.....++.....+.... ..+..+ -.+.++++|.-+.++-.+..+.|-+||+.+..
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~---------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPST---------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EEEeccchhhhhhccCccCCCccc---------cccccc-cceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 999887766544443222211110 011222 37889999977788999999999999998854
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.2e-17 Score=165.83 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=107.8
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..|...|..+.|.|. ...|++++.|++|++|++.. .........+++.+|.+|.++|.|+++.+ ++..+++|+.|
T Consensus 291 ~s~~d~ir~l~~~~s--ep~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D 365 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPS--EPVLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID 365 (577)
T ss_pred ecchhhhhhhhcCCC--CCeEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence 568889999999998 68999999999999999943 22223334578999999999999999988 77899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
|+|+.|++....-. .-. ++ .........+|+..|+.+++++. .+.|++++.||++|+|+.....
T Consensus 366 g~I~~w~~p~n~dp-~ds----------~d----p~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDP-DDS----------YD----PSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ceeeeeccCCCCCc-ccc----------cC----cchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcC
Confidence 99999988732211 000 00 00111233478899999999997 5789999999999999987655
Q ss_pred C
Q 004290 250 P 250 (763)
Q Consensus 250 ~ 250 (763)
+
T Consensus 430 ~ 430 (577)
T KOG0642|consen 430 P 430 (577)
T ss_pred c
Confidence 3
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=7.9e-15 Score=160.09 Aligned_cols=208 Identities=28% Similarity=0.438 Sum_probs=156.0
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccC-CCCceEEEEE-eeCCCCc-EEEEEeC-CCcE
Q 004290 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV 119 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~-h~~~V~~v~~-~p~~~~~-~l~s~s~-dg~I 119 (763)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .+ +...+..+.+ .++ +. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPD--GNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCC--cceEEeccCCCCccE
Confidence 567899999999999999999999999999999999886 66666 34 3347778877 666 45 5555444 9999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
.+|+.... ......+..|...|..++|+|+ +.++++++. |+.+++|++.....
T Consensus 137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------- 190 (466)
T COG2319 137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKP---------------- 190 (466)
T ss_pred EEEEecCC---------CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCce----------------
Confidence 99999851 1336778889999999999994 457777775 99999999987431
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
+.....|...|.+++|+|++..++++++.|+.|++||...+..+.. ...+|.
T Consensus 191 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-------------------~~~~~~ 242 (466)
T COG2319 191 ---------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-------------------TLSGHS 242 (466)
T ss_pred ---------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-------------------ecCCCC
Confidence 1112236788999999987432555559999999998875433221 012343
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.. . ...|+|++.++++++.|+.+++|++...
T Consensus 243 ~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 243 DS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred cc-e-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 32 2 2289999988899999999999999874
No 176
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=7.9e-17 Score=159.60 Aligned_cols=261 Identities=16% Similarity=0.167 Sum_probs=184.4
Q ss_pred ccccccchhh--hhccccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEEEE
Q 004290 27 NHSLQMHSSL--VRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKF 101 (763)
Q Consensus 27 ~~~~~~~~~~--~~~~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~ 101 (763)
-.+|-+|+.- .+...-+..+..|.++|.+|.|+|. -..+.+.|+||+|++-|+++... +... ..-...+.++.|
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~ 287 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDF 287 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-Cccceeeeeccc
Confidence 3566667642 3445667788999999999999994 46788999999999999987643 2222 123445678888
Q ss_pred eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
+.+ ...++.+..=|...+||.+..... ...+.-|...|++|+++|..+.+|+|+|.|++++|||+|.-.
T Consensus 288 ~~e--~~~vl~~~~~G~f~~iD~R~~~s~---------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 288 SAE--SRSVLFGDNVGNFNVIDLRTDGSE---------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred cCC--CccEEEeecccceEEEEeecCCcc---------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence 888 466677776679999999985422 344566888999999999999999999999999999999864
Q ss_pred CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC----CCCCCcccCCC
Q 004290 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQKR 257 (763)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~----~~~~~~~~~~~ 257 (763)
.... .+.....|...|.+..|+|.++. |++.+.|..|||||.. ...+..++.
T Consensus 357 ~K~s---------------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-- 412 (498)
T KOG4328|consen 357 GKAS---------------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-- 412 (498)
T ss_pred CCCC---------------------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee--
Confidence 2210 12233457889999999999765 9999999999999984 222222211
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec--CCCCeeeeeccCCCC
Q 004290 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNG 335 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~p~~~~ 335 (763)
|-...|..- ......|.|+..++++|-.-..|-|||-..+........+ ........|+|....
T Consensus 413 -------------Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~ 478 (498)
T KOG4328|consen 413 -------------HNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDT 478 (498)
T ss_pred -------------ccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccc
Confidence 111111111 2455689999999999988888999998885422222222 233456778886554
Q ss_pred cc
Q 004290 336 LE 337 (763)
Q Consensus 336 ~~ 337 (763)
+.
T Consensus 479 ~~ 480 (498)
T KOG4328|consen 479 LA 480 (498)
T ss_pred ee
Confidence 43
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-15 Score=166.32 Aligned_cols=226 Identities=18% Similarity=0.175 Sum_probs=156.2
Q ss_pred hhccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCC-------eEEEEEccCCCCceEEEEEeeCCCCc
Q 004290 37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDE 108 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~-------~~~~~~~~~h~~~V~~v~~~p~~~~~ 108 (763)
.-++.++..|..|...|..++.++.. .+++|||.||+|++||...- +...++ ......+.++.+.+. ++
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~~ 1111 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--GD 1111 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--CC
Confidence 34567788899999999999998754 99999999999999998631 223333 235678999999998 79
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEE-EEecCCCC-EEEEEeCCCcEEEEECCCCCCCCC
Q 004290 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKL-AVEVGNPH-VVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l-~~sp~~~~-~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
.+|.++.||.|++.++......... ......... ..+.+.+| +|...... .++.+..-+.|..||++.....
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-- 1186 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-- 1186 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--
Confidence 9999999999999999863211100 011111111 12334443 55544444 7778888899999999986522
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
| ....+...+.|++++.+|. ++++++|+..|.+.+||+|=+.++....
T Consensus 1187 ------------w---------~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~---------- 1234 (1431)
T KOG1240|consen 1187 ------------W---------RLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWE---------- 1234 (1431)
T ss_pred ------------H---------hhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeeccc----------
Confidence 1 1111234568999999997 6899999999999999999765544332
Q ss_pred ccccccccCCCCCccceeEEEEcCC---CCEEEEEe--CCCeEEEEECCCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSY--SGEHVYLMDVNHAG 312 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spd---g~~l~~~s--~d~~i~iwd~~~~~ 312 (763)
+++. .+|+.|..+|- ....++++ ..+.|.+|++.++.
T Consensus 1235 ---------~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1235 ---------HPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ---------Cccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 1222 25777777763 34444444 47899999999964
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=150.75 Aligned_cols=250 Identities=16% Similarity=0.180 Sum_probs=177.7
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCC-CceEEEEEe
Q 004290 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKFV 102 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~-~~V~~v~~~ 102 (763)
+..+++++. .+.+.+.++++|...++.++|.. .+..+.+|+.||+|++||++.......+. ..+. .+..|++..
T Consensus 49 ngsv~lyd~--~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDK--GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred CCeEEEEec--cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 567888873 44788999999999999999987 46788999999999999999876554442 3344 355566665
Q ss_pred eCCCCcEEEEEeC----CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290 103 PETSDELVVSGAG----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 103 p~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
-. ++++++|.. +-.|.+||++..+.. .-.-...|.+.|++|.|+|.++++|+||+.||.|.+||+.
T Consensus 127 ck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 127 CK--KNIIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred Cc--CCeEEeccccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 45 678888764 677999999974310 1234568999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC
Q 004290 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (763)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~ 258 (763)
....- + .+...-.+...|.++.|....-+.|.+-+...+..+|++..+.....+..+.
T Consensus 197 ~d~Ee--------D--------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 197 KDNEE--------D--------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CCcch--------h--------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc
Confidence 75311 0 1111123456788999998755679999999999999999887555444331
Q ss_pred C-------------------C---------CCc---cccc-----cccc-----ccCCCCCccceeEEEEcCCCCEEEEE
Q 004290 259 S-------------------P---------PPC---VNYF-----CPMH-----LSEHGRSSLHLTHVTFSPNGEEVLLS 297 (763)
Q Consensus 259 ~-------------------~---------~~~---~~~~-----~~~~-----~~~~g~~~~~i~~v~~spdg~~l~~~ 297 (763)
. | ..+ ...| ++.. ...+|+...-|+++.|...+.++++|
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeecc
Confidence 1 0 000 0000 0000 01133333358888888889999999
Q ss_pred eCCCeEEEEECCC
Q 004290 298 YSGEHVYLMDVNH 310 (763)
Q Consensus 298 s~d~~i~iwd~~~ 310 (763)
+.||.+.+|....
T Consensus 335 GEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 335 GEDGLLQAWKVED 347 (376)
T ss_pred CCCceEEEEecCC
Confidence 9999999998643
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.1e-16 Score=158.48 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=124.1
Q ss_pred EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004290 88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 88 ~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
++.+|++.|.++...|. |..|++|+.||+|+||.+.++ .++..+. ..+.|.||+|+|.....++.+.
T Consensus 395 vyrGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~Tg----------Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATG----------RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eEeccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecc----------eEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 34799999999999998 899999999999999999983 3466664 5668999999996655555566
Q ss_pred CCCcEEEEECCCCCCCCC------CCC----CCcccceEEEecCC--CceeeccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004290 168 EDGTLRQHDFRQGSSCPP------AGS----SHQECRNILLDLRC--GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG 235 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~------~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs 235 (763)
....+.|-+..-+..+.. ... .........|.-.. .....++....|...|+.+.|+.. |.||++..
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~ 540 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVM 540 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEec
Confidence 666677776554432200 000 00111122222110 001112233346678999999996 79999987
Q ss_pred CC---CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 236 SD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 236 ~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+ ..|.|.++.......-| ....+.|.++.|+|...+|++++. ..|+|||+..
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF---------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k 596 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPF---------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK 596 (733)
T ss_pred cCCCcceEEEEecccccccCch---------------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhH
Confidence 64 46888888764322111 012225999999999999888875 5789998876
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=5.4e-14 Score=153.51 Aligned_cols=228 Identities=27% Similarity=0.423 Sum_probs=167.0
Q ss_pred cccccccchhhhhccccceeecccc-CceEEEEe-CCCCC-EEEEEeC-CCcEEEEeCCC-CeEEEEEccCCCCceEEEE
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTK 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~f-sp~g~-~Lasgs~-D~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~ 100 (763)
.+..+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+.+||... ......+ ..|...|.+++
T Consensus 85 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 162 (466)
T COG2319 85 SDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLA 162 (466)
T ss_pred CCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEE
Confidence 45666777633333 3556666644 37888888 88887 5555444 99999999998 6667777 78999999999
Q ss_pred EeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 101 FVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
|+|+ +..+++++. |+.+++|++... ..+..+.+|...|.+++|+|++..++++++.|+.|++||...
T Consensus 163 ~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 163 FSPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred ECCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 9999 678888885 999999999862 346777789999999999985543666669999999998774
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
+..... ....|.... -..|+|++ .++++++.|+.+++||.+.....
T Consensus 231 ~~~~~~------------------------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~-------- 276 (466)
T COG2319 231 GKLLRS------------------------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL-------- 276 (466)
T ss_pred CcEEee------------------------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE--------
Confidence 432100 112233332 22799974 78889999999999999975430
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004290 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~ 313 (763)
...+ .+|.. .|.++.|.|++..+++++.|+.+.+|+..+...
T Consensus 277 ----~~~~-------~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 277 ----LRTL-------SGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ----EEEE-------ecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 1111 22323 699999999999999988899999998887553
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.68 E-value=9.4e-16 Score=149.17 Aligned_cols=177 Identities=20% Similarity=0.233 Sum_probs=142.2
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.||+++|..++|+|.+ +..|||||.|.+|.||.+..... ...-.+++..+.+|...|-.|+|+|.-.+.|+|++.|
T Consensus 78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l---~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGL---TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC-CceeecCCCCceEEEEECCCccc---ccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 6999999999999986 88999999999999999975321 1122367889999999999999999888999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
.+|.+||+.+++.. .. ..|..-|+++.|+.+ |.+|++.+.|..|||||.++++
T Consensus 154 n~v~iWnv~tgeal-------------------------i~-l~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL-------------------------IT-LDHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceEEEEeccCCcee-------------------------ee-cCCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence 99999999998732 11 127788999999997 7899999999999999999987
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceE
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMR 317 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~ 317 (763)
.+..- .+|.+..-..+.|-.+|..+-+|-. +..+-+||..+-..+...
T Consensus 207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence 65332 2355545667789899995545533 789999999886655433
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=4.8e-14 Score=151.51 Aligned_cols=205 Identities=19% Similarity=0.159 Sum_probs=136.4
Q ss_pred CcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCce
Q 004290 72 THINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (763)
Q Consensus 72 ~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 150 (763)
+.+.||++.... .-..+ .-...|.|++|+|.. ..+++.|..+|.|.+||++.+..... .........|..++
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCceEEE--ecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCe
Confidence 468999998763 23333 456789999999986 88999999999999999997553211 11122334689999
Q ss_pred eEEEEecCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004290 151 KKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (763)
Q Consensus 151 ~~l~~sp~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 229 (763)
..+.|..... .-|++++.||.|..|+++.-..+....... ... ...........+++++|.+.+++
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~---------~~~----~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE---------SKK----HKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc---------ccc----ccccccccccceeeEeeccCCCc
Confidence 9999976221 347899999999999888765432111100 000 00001123457899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004290 230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 230 ~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
.|++|+.+|.|.-=+....+.-.. ..+ ..+.....|.+ +|+++.++|=+..++.++.|-+|+||.-.
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~-----------~~~-~~~~~~~~h~g-~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPE-----------VSY-KGHSTFITHIG-PVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred eEEEEcCCcEEEEEeccCCccccc-----------ccc-cccccccccCc-ceEeeecCCCccceeeeeccceeEecccc
Confidence 999999999988744443321110 000 11111122434 69999999988877777779999999765
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=9.1e-14 Score=146.26 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=120.5
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--EEEEEccCCCCceEEEEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 65 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 65 Lasgs~D~~v~iWd~~~-~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
+++...|+.|.+||+.+ ++ .+..+ .+.+....++++|+ +++|++++ .++.|.+|++.. .+.. ...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence 34457789999999964 33 44444 23456788999999 67776654 588999999972 2211 112
Q ss_pred eeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290 141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (763)
Q Consensus 141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (763)
.... ..+....|+|+|++ +++++++ .++.|.+|++.+...... . +...+ +.....
T Consensus 74 ~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~-----------~~~~~-~~~~~~ 129 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------P-----------IQIIE-GLEGCH 129 (330)
T ss_pred eeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------c-----------eeecc-CCCccc
Confidence 2221 23456789999954 5555554 589999999964321100 0 00000 112356
Q ss_pred EEEEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 004290 220 SCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (763)
Q Consensus 220 ~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s 298 (763)
.++++|+ ++++ ++...++.|.+||+.+...+..... .. ... ..| .....++|+|+|++|+++.
T Consensus 130 ~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~--------~~---~~~-~~g---~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 130 SANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEP--------AE---VTT-VEG---AGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred EeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCC--------Cc---eec-CCC---CCCceEEECCCCCEEEEEe
Confidence 7889997 4555 5555679999999986322210000 00 000 001 1256789999999998887
Q ss_pred C-CCeEEEEECCC
Q 004290 299 S-GEHVYLMDVNH 310 (763)
Q Consensus 299 ~-d~~i~iwd~~~ 310 (763)
. ++.|.+|+++.
T Consensus 194 ~~~~~v~v~~~~~ 206 (330)
T PRK11028 194 ELNSSVDVWQLKD 206 (330)
T ss_pred cCCCEEEEEEEeC
Confidence 7 99999999975
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=2.7e-15 Score=140.40 Aligned_cols=205 Identities=15% Similarity=0.240 Sum_probs=154.8
Q ss_pred cccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 48 gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
.+..++++..|+. +-++|.++|-|-+..|||++++.. +++-+..|...|+.++|...+ -+.|++++.||.||+||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence 4567899999987 678999999999999999999733 444446899999999999965 789999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
+...... .+..-..-..+...++|++.++++++|-..|. .|.|.|+|....
T Consensus 227 R~leHST-------IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--------------------- 278 (364)
T KOG0290|consen 227 RSLEHST-------IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--------------------- 278 (364)
T ss_pred cccccce-------EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---------------------
Confidence 9743211 11111222567889999999999999987764 699999998753
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
.+....+|...|+.|+|.|..+..|++++.|..+-|||+...-.- .... +.+. ... +..|+
T Consensus 279 ---pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~d-Pila---------y~a-~~EVN 339 (364)
T KOG0290|consen 279 ---PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGED-PILA---------YTA-GGEVN 339 (364)
T ss_pred ---ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc-----CCCC-chhh---------hhc-cceee
Confidence 355566789999999999998999999999999999999864210 0000 0000 111 12499
Q ss_pred EEEEcC-CCCEEEEEeCC
Q 004290 284 HVTFSP-NGEEVLLSYSG 300 (763)
Q Consensus 284 ~v~~sp-dg~~l~~~s~d 300 (763)
.+.|++ .+.+|+.+...
T Consensus 340 qi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecccCCCEEEEEecC
Confidence 999996 56777776653
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=3.7e-15 Score=145.86 Aligned_cols=257 Identities=20% Similarity=0.283 Sum_probs=174.5
Q ss_pred CCCcccccccccchhhhh-------ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--------C----
Q 004290 21 DTRPDVNHSLQMHSSLVR-------RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S---- 81 (763)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-------~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--------~---- 81 (763)
..++..++.+++|..... +++....|..|+..|+++.|+|+|++||||+.+|.|.+|... +
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 345677889999974332 345566788999999999999999999999999999999765 2
Q ss_pred -C--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC
Q 004290 82 -R--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 158 (763)
Q Consensus 82 -~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 158 (763)
. -.+.....+|...|..++|+|+ +.++++++.|..+++||+..+ .....+..|...+..++|.|
T Consensus 109 ~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G----------~l~~~~~dh~~yvqgvawDp- 175 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAG----------QLLAILDDHEHYVQGVAWDP- 175 (434)
T ss_pred CccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccc----------eeEeeccccccccceeecch-
Confidence 1 1333444789999999999999 799999999999999999974 34677889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCC--------CCCcc-----------------------c--------------
Q 004290 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAG--------SSHQE-----------------------C-------------- 193 (763)
Q Consensus 159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~-----------------------~-------------- 193 (763)
-..++++-+.|...+.+.+...+...... ..+.+ .
T Consensus 176 l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 176 LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence 55888888888877777665543220000 00000 0
Q ss_pred ----ceEEEec-CCCceeeccCCCCCccceEEEEEeCC-----------------CCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290 194 ----RNILLDL-RCGAKRSLADPPKQTLSLKSCDISST-----------------RPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 194 ----~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~p~-----------------~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
.+.-+.+ +..-.+.+...+.-..++..+.|+|- ....+|+++ ...|.+||.++..++
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~ 334 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPL 334 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccce
Confidence 0000000 00111122222333334444454442 012345554 457899999876544
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.... .-|-. .|+.++|++||..|+.++.||...+-.+...
T Consensus 335 ~~v~-------------------nihy~-~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 335 AVVD-------------------NIHYS-AITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEEe-------------------eeeee-eecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 3221 11222 5999999999999999999998887766653
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=3.1e-14 Score=152.94 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=163.2
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeE-----EEEEccCCCCceEEEEEe
Q 004290 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFV 102 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~-----~~~~~~~h~~~V~~v~~~ 102 (763)
.+.+|+.--. ..+...+.. ...|+|++|+| +..+||.|..+|+|.+||+..+.. +......|..+|+.+.|.
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred eEEEEecCCC-CCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 4555652222 455555553 56799999999 668899999999999999987654 223335799999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd 176 (763)
.+..+.-|++++.||.|..|+++....... ..+..... .-...+++++|.|.++..|+.|+++|.|.--+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e----~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVE----GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchh----hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence 874345699999999999998875332110 00011111 12346899999999999999999999998744
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccC
Q 004290 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQ 255 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~ 255 (763)
....+... ... ...+..+..|.++|+++.++|-....|++++ |.+++||... ...++..+.
T Consensus 377 r~g~~~~~----------~~~-------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 377 RKGYTPAP----------EVS-------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred ccCCcccc----------ccc-------ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh
Confidence 33332110 000 0123344567889999999998776777776 9999999877 433332221
Q ss_pred CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004290 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNHA 311 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~-~s~d~~i~iwd~~~~ 311 (763)
.+.. .|++++|||.-.-+++ +..||.|.+||+...
T Consensus 439 --------------------~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 439 --------------------SSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --------------------hccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 1222 4999999998765554 555999999999873
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=5.1e-16 Score=163.99 Aligned_cols=157 Identities=20% Similarity=0.323 Sum_probs=118.7
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.+|...|+|+.|... |.++++|+.|..|+||...+. .++....||.+.|+.++.+. +..++++++.|
T Consensus 187 lgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~----------~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D 253 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA----------RCLASCRGHSGDITDLAVSS-NNTMIAAASND 253 (1113)
T ss_pred Hhhhhheeeeeeccc--cceEeecCccceeeeeeccch----------hhhccCCCCccccchhccch-hhhhhhhcccC
Confidence 589999999999998 899999999999999998762 45788999999999999987 55789999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
..|++|-+..+.+ +....+|++.|++|+|+|.. +.+.||++++||.+ ..
T Consensus 254 ~vIrvWrl~~~~p-------------------------vsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~ 302 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAP-------------------------VSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LE 302 (1113)
T ss_pred ceEEEEecCCCch-------------------------HHHHhccccceeeeccCccc-----cCCCCCceEecccc-cc
Confidence 9999999998763 33445789999999999962 67899999999998 22
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iw 306 (763)
++...+. .+...+. .-+.++.|..++.-+++++.|+.-..|
T Consensus 303 ~~~y~pr--------------p~~~~~~--~~~~s~~~~~~~~~f~Tgs~d~ea~n~ 343 (1113)
T KOG0644|consen 303 PRIYVPR--------------PLKFTEK--DLVDSILFENNGDRFLTGSRDGEARNH 343 (1113)
T ss_pred ccccCCC--------------CCCcccc--cceeeeeccccccccccccCCcccccc
Confidence 2211111 1111111 135666666666666666666554444
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=150.03 Aligned_cols=221 Identities=14% Similarity=0.206 Sum_probs=156.8
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc-----------
Q 004290 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN----------- 95 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~----------- 95 (763)
..++.+++ .....++.+|+||++.|+|++|+.||+++|||+.|+.|.||+..-...+ . ..|...
T Consensus 32 g~rlliyD--~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k--YSH~D~IQCMsFNP~~h 106 (1081)
T KOG1538|consen 32 GSRLLVYD--TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K--YSHNDAIQCMSFNPITH 106 (1081)
T ss_pred CCEEEEEe--CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e--eccCCeeeEeecCchHH
Confidence 35666666 6677889999999999999999999999999999999999986422111 1 134444
Q ss_pred ----------------------------eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290 96 ----------------------------VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (763)
Q Consensus 96 ----------------------------V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (763)
|.+++|..+ |++|+.|-.+|+|.|-+-..... ..+..-.+..
T Consensus 107 ~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--GqylalG~~nGTIsiRNk~gEek--------~~I~Rpgg~N 176 (1081)
T KOG1538|consen 107 QLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--GQYLALGMFNGTISIRNKNGEEK--------VKIERPGGSN 176 (1081)
T ss_pred HhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC--CcEEEEeccCceEEeecCCCCcc--------eEEeCCCCCC
Confidence 445555555 78899998999998875542110 1122233567
Q ss_pred CceeEEEEecCCC----CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004290 148 RRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (763)
Q Consensus 148 ~~v~~l~~sp~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (763)
.+|.+++|+|..+ .+++......++.++.+.... + .....-.....|+.+
T Consensus 177 spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-I-------------------------gk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 177 SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-I-------------------------GKDRALNFDPCCISY 230 (1081)
T ss_pred CCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-e-------------------------cccccCCCCchhhee
Confidence 8999999999543 366666677777777665432 1 001112334568889
Q ss_pred eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004290 224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (763)
Q Consensus 224 ~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i 303 (763)
.|+ |.+++.|+.|+.+++|-.. |-.+.++ |....+|+.|+..|++++++.|+.||+|
T Consensus 231 f~N-GEy~LiGGsdk~L~~fTR~-GvrLGTv---------------------g~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 231 FTN-GEYILLGGSDKQLSLFTRD-GVRLGTV---------------------GEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred ccC-CcEEEEccCCCceEEEeec-CeEEeec---------------------cccceeEEEEEEccCCceEEEEEccCee
Confidence 996 7899999999999999654 3222221 2233489999999999999999999999
Q ss_pred EEEECCCC
Q 004290 304 YLMDVNHA 311 (763)
Q Consensus 304 ~iwd~~~~ 311 (763)
-.|++...
T Consensus 288 ACyNl~fS 295 (1081)
T KOG1538|consen 288 ACYNLIFS 295 (1081)
T ss_pred ehhhhHHh
Confidence 99998763
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=6e-15 Score=151.29 Aligned_cols=206 Identities=17% Similarity=0.238 Sum_probs=147.1
Q ss_pred cCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290 50 QGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 50 ~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
...|+.+.|.| |...||.+++||.|+||.+..+. .-..+ ..|...|+++.|+|-- .+.|++++.|-+|++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIEL 704 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchh-hhHhhhhhccceeee
Confidence 35699999999 77899999999999999987542 22334 7899999999999975 689999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
||+.+.. ....+.+|.+.|..++|+| +++.+++.+.||+|++|.-++.+.......+...
T Consensus 705 WDl~~~~----------~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--------- 764 (1012)
T KOG1445|consen 705 WDLANAK----------LYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG--------- 764 (1012)
T ss_pred eehhhhh----------hhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCcc---------
Confidence 9999843 2456889999999999999 7799999999999999999988755332222111
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCC--CcccCCCCCCCCcccccccccccCC
Q 004290 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
..-..|.|.-+ +.++++.+.| ..|.+||..+... +.+...+..|
T Consensus 765 --------------tRgARi~wacd-gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap--------------- 814 (1012)
T KOG1445|consen 765 --------------TRGARILWACD-GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP--------------- 814 (1012)
T ss_pred --------------CcceeEEEEec-CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC---------------
Confidence 12234556665 5777776655 5688998876531 1111000000
Q ss_pred CCCccceeEEEEcCCCCE-EEEEeCCCeEEEEECCCCC
Q 004290 276 GRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~-l~~~s~d~~i~iwd~~~~~ 312 (763)
.+.--.+.+|... +++|-.|..|++|.+-...
T Consensus 815 -----s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 815 -----SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred -----ccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 0111124455554 4556669999999997743
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=1.1e-13 Score=131.67 Aligned_cols=227 Identities=15% Similarity=0.187 Sum_probs=169.6
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
-..+|+|.+|++|+..+|.+-....|-||...... ..+++ ..|...|++++|+|. .+.|++|+.|+.-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence 35789999999999999999999999999887654 56777 789999999999999 6899999999999999985
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
.+ ..+.+...+..+...++++.|+| ..+.|++|+.-+.|.||-++.... .|-
T Consensus 86 ~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWV------ 137 (361)
T KOG1523|consen 86 SG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWV------ 137 (361)
T ss_pred CC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eeh------
Confidence 32 12567788888999999999999 679999999999999998776431 110
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc-cCCCCCccceeE
Q 004290 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTH 284 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~i~~ 284 (763)
.-.........|++++|+|. +-+|++|+.|+..|+|..--.. +..+..+.+--..+.-+.+ .+.....++|..
T Consensus 138 -sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK~----Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~ 211 (361)
T KOG1523|consen 138 -SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIKG----VDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG 211 (361)
T ss_pred -hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeeec----cccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence 00111234567999999996 6799999999999999753211 1111111100000000111 112244457999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+.|+|+|..|+-.+.|..+.+-|...+.
T Consensus 212 v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 212 VLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999999999988864
No 191
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.1e-14 Score=143.88 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=148.3
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 54 ~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 133 (763)
.+++|+.+|..|++|+.||++|||++.....+... ..|...|.++.|+|+ +.+|++-+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~---- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA---- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence 78999999999999999999999998888777776 688899999999999 7999999999 999999998522
Q ss_pred CCCCCCceee--ecccCceeEEEEecCC---C-CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 134 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 134 ~~~~~~~~~~--~~h~~~v~~l~~sp~~---~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
+... ..-......+.|+.++ . .+++....-+.|+.||+.....- ....
T Consensus 220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~ 273 (398)
T KOG0771|consen 220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR 273 (398)
T ss_pred ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence 1111 1222344556776633 1 22333344567777776654310 0000
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
..........|.+++.+++ |+++|.|+.||.|-|++..+.+.+.-. .+.|.. .||.|.|
T Consensus 274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~v-------------------k~aH~~-~VT~ltF 332 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYV-------------------KEAHLG-FVTGLTF 332 (398)
T ss_pred hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEee-------------------hhhhee-eeeeEEE
Confidence 1111122347899999997 799999999999999999987644322 133544 5999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC
Q 004290 288 SPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+||.+++++.+.|..+.+..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999999999887765
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=2.8e-14 Score=135.60 Aligned_cols=239 Identities=16% Similarity=0.142 Sum_probs=168.6
Q ss_pred CceEEEEeC-------CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCC---ceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 51 GCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSA---NVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 51 ~~V~~l~fs-------p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~---~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
+.|...+|- |+..++|+.+.+.-|.+||.-+|+....+. ..|.. .-.+++|+|+ |.+|+.| ..+.|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRCI 181 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEeec-ccceE
Confidence 457777775 577899999999999999999998776652 12333 3468999999 7888766 57899
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++||+..+...+.... ...+...+..+.|.+++|+|.+...++.++.-..+-|+.-....++
T Consensus 182 rvFdt~RpGr~c~vy~--t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl---------------- 243 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYT--TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL---------------- 243 (406)
T ss_pred EEeeccCCCCCCcchh--hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------------
Confidence 9999965433321000 0011123457889999999998889999999888888776655432
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCC
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
....+|.+.|+.++|.++ |+.|++|.. |..|-.||+|... ++..+ .+|
T Consensus 244 ---------~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L--------------------~rh 293 (406)
T KOG2919|consen 244 ---------QLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYAL--------------------ERH 293 (406)
T ss_pred ---------eeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhh--------------------hhh
Confidence 222367889999999998 678888874 6789999999643 22221 112
Q ss_pred Ccc--ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ccceEeecCCCCeeeeeccCCCCcccCC
Q 004290 278 SSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLELQP 340 (763)
Q Consensus 278 ~~~--~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (763)
... .---....|++++|++|+.||.|++||+.... ............+.++++|....++...
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 111 12234456899999999999999999999944 3555556677778888888755544443
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=4.6e-15 Score=149.56 Aligned_cols=193 Identities=17% Similarity=0.315 Sum_probs=146.7
Q ss_pred hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d 116 (763)
.+..++.+.+..|.+.|.+-.|+|||.-|+|+++||.|++|.- +|....++ .....+|.|++|.|++ ...+.+.+
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g-- 165 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG-- 165 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecC--
Confidence 3556778888999999999999999999999999999999984 45444344 4566789999999996 55666554
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
+.+.|=-+... ..+-..++|.+-|.++.|+| ..+++++|++|-..++||-...
T Consensus 166 ~h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~---------------- 218 (737)
T KOG1524|consen 166 GHISIKPLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA---------------- 218 (737)
T ss_pred CeEEEeecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc----------------
Confidence 34444444321 22455789999999999999 5589999999999999996543
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
.+.....|..+|++++|+|+ ..++.++. .++|+=.++.
T Consensus 219 ----------~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~~----------------------------- 256 (737)
T KOG1524|consen 219 ----------NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPRV----------------------------- 256 (737)
T ss_pred ----------ccccCChhccceeeeeeccc--cceeeeee-eeeeecCCCc-----------------------------
Confidence 23444567889999999997 57777764 4555322222
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iw 306 (763)
+.|..++||+||..++.|+..|.+.+=
T Consensus 257 ---GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 257 ---GSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---cceEEEEEcCCCceeeccccCceEEEe
Confidence 159999999999999999998876543
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=1.9e-12 Score=136.23 Aligned_cols=241 Identities=8% Similarity=0.104 Sum_probs=147.5
Q ss_pred cccccccchhhh-hccccceeeccccCceEEEEeCCCCCEEEEEe-CCCcEEEEeCC-CCeE--EEEEccCCCCceEEEE
Q 004290 26 VNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTK 100 (763)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs-~D~~v~iWd~~-~~~~--~~~~~~~h~~~V~~v~ 100 (763)
.++.|.+|+... .+++.+..+. +.+....++++|++++|+.++ .++.|.+|++. +++. +... .....+..+.
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~ 86 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHIS 86 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEE
Confidence 346677776421 3445666665 346678899999999887664 57899999996 3432 2333 2334577899
Q ss_pred EeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 101 FVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
|+|+ +++|++++. ++.|.+|++... +.. ...+..+. +...+..++++|++..++++...++.|.+||+.+
T Consensus 87 ~~~~--g~~l~v~~~~~~~v~v~~~~~~-g~~-----~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 87 TDHQ--GRFLFSASYNANCVSVSPLDKD-GIP-----VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ECCC--CCEEEEEEcCCCeEEEEEECCC-CCC-----CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 9999 677777664 889999999742 211 01122222 3345678899995544556666779999999976
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCC-CCcccCCC
Q 004290 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKR 257 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~-~~~~~~~~ 257 (763)
...+..... .. +.... ......++|+|+ +++++++.. ++.|.+||+.... .+....
T Consensus 158 ~g~l~~~~~-------~~----------~~~~~--g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~-- 215 (330)
T PRK11028 158 DGHLVAQEP-------AE----------VTTVE--GAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQ-- 215 (330)
T ss_pred CCcccccCC-------Cc----------eecCC--CCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEE--
Confidence 332100000 00 00000 123467899997 677777765 8999999997421 111000
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~ 310 (763)
.+... |.... +. . ....+.|+|+|++|+++.. ++.|.+|++..
T Consensus 216 -----~~~~~-p~~~~--~~-~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 216 -----TLDMM-PADFS--DT-R-WAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred -----EEecC-CCcCC--CC-c-cceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 00000 00000 01 1 2456899999999999865 78999999865
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.3e-13 Score=134.29 Aligned_cols=223 Identities=14% Similarity=0.163 Sum_probs=146.4
Q ss_pred Ccccccccccchhhhhccccceee-ccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCC---------Ce-EEEEEc
Q 004290 23 RPDVNHSLQMHSSLVRRLSQEREL-EGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSS---------RK-LLHSIE 89 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~---------~~-~~~~~~ 89 (763)
+++-+-++-+|+.+ ..|+++.+ +||...|.++.|-| +.++++||+.|..|+|+|+.. .+ ....+
T Consensus 67 SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~- 143 (758)
T KOG1310|consen 67 SGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW- 143 (758)
T ss_pred ecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-
Confidence 45667889999977 34555554 69999999999999 567899999999999999974 11 22333
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..|...|.-++-.|++ .+.+-+++.||+|+-+|++.+.....+......+..+....-...|+.++|..+.+|+.|+.|
T Consensus 144 ~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 144 SCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred hhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 6899999999999984 589999999999999999974321111100111112222334578999999999999999999
Q ss_pred CcEEEEECCCCCCCCCC-----CCCCcccceEEEecCCCceeeccC-CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290 170 GTLRQHDFRQGSSCPPA-----GSSHQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw 243 (763)
-..++||.|...+.... ......|..+-+ +..++.+.... .......++-+.|+|+ |.-|++.-....|+++
T Consensus 223 pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-f~p~hlkn~~gn~~~~~~~~t~vtfnpN-GtElLvs~~gEhVYlf 300 (758)
T KOG1310|consen 223 PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-FSPGHLKNSQGNLDRYITCCTYVTFNPN-GTELLVSWGGEHVYLF 300 (758)
T ss_pred chhhhhhhhhhccCCCCCccccCCCCcccchhhe-ecCccccCcccccccceeeeEEEEECCC-CcEEEEeeCCeEEEEE
Confidence 99999997654432111 111122222111 11111100000 0011123567789997 5566666666789999
Q ss_pred eCCCCCCC
Q 004290 244 DRRMLPPL 251 (763)
Q Consensus 244 d~~~~~~~ 251 (763)
|+...+..
T Consensus 301 dvn~~~~~ 308 (758)
T KOG1310|consen 301 DVNEDKSP 308 (758)
T ss_pred eecCCCCc
Confidence 99987644
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=129.93 Aligned_cols=210 Identities=11% Similarity=0.086 Sum_probs=133.4
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 134 (763)
-++|||+|+++|+++.- .+.|=|.++-+..+.+ .--..|..+.|..++ -.+|.....|+.|.+|++..++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew----- 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEW----- 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeeccee-----
Confidence 46899999999999875 8888888876654443 124578889999885 55666677899999999997543
Q ss_pred CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC--------CCcccceEEEecCCCc--
Q 004290 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS--------SHQECRNILLDLRCGA-- 204 (763)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 204 (763)
...+......+.++.|+|++.+++.+...|-.|.+|.+.+.+....... .+.+.+...+-.+...
T Consensus 84 -----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 84 -----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred -----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence 3455666788999999997778888889999999999988763210000 0000000000000000
Q ss_pred ---------eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004290 205 ---------KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 205 ---------~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
-..+..+.-.+...+.+.|+|+ |+.|| +||---.-.+. .
T Consensus 159 yv~i~~c~~W~ll~~f~~dT~DltgieWsPd-g~~la---------Vwd~~Leykv~----------------------a 206 (447)
T KOG4497|consen 159 YVQISSCKAWILLKEFKLDTIDLTGIEWSPD-GNWLA---------VWDNVLEYKVY----------------------A 206 (447)
T ss_pred HHHHHhhHHHHHHHhcCCCcccccCceECCC-CcEEE---------Eecchhhheee----------------------e
Confidence 0001112223345567777776 45554 34322110000 0
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
=+.+..+..+.|+|.+++|++|+.|+.+++-+--+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 02222589999999999999999999999876544
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.1e-13 Score=148.03 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=110.0
Q ss_pred CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (763)
Q Consensus 71 D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (763)
+..|.|||..... ...+ ..|...+.+..|+|+ |+.|+.++.+ ..|++||+.++.. ..+..+.+
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~g-- 248 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR--------KVVASFRG-- 248 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce--------EEEecCCC--
Confidence 4689999987554 4445 567888999999999 7888887654 3699999986431 11233333
Q ss_pred CceeEEEEecCCCCEEEE-EeCCCcEEEE--ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290 148 RRVKKLAVEVGNPHVVWS-ASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (763)
Q Consensus 148 ~~v~~l~~sp~~~~~l~s-~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 224 (763)
....++|+|++ +.|+. .+.+|.+.|| |+.+++.. .+ ..+...+.+.+|+
T Consensus 249 -~~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~~-----------------------~l---t~~~~~~~~~~wS 300 (429)
T PRK01742 249 -HNGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTPS-----------------------QL---TSGAGNNTEPSWS 300 (429)
T ss_pred -ccCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCeE-----------------------ee---ccCCCCcCCEEEC
Confidence 34468999954 55544 4578876665 55443310 11 1123346788999
Q ss_pred CCCCcEEE-EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004290 225 STRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (763)
Q Consensus 225 p~~~~~l~-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i 303 (763)
|+ ++.|+ ++..++..+||++...... .... ++.. ..+.|+|||++|+.++.++ +
T Consensus 301 pD-G~~i~f~s~~~g~~~I~~~~~~~~~------------~~~l--------~~~~---~~~~~SpDG~~ia~~~~~~-i 355 (429)
T PRK01742 301 PD-GQSILFTSDRSGSPQVYRMSASGGG------------ASLV--------GGRG---YSAQISADGKTLVMINGDN-V 355 (429)
T ss_pred CC-CCEEEEEECCCCCceEEEEECCCCC------------eEEe--------cCCC---CCccCCCCCCEEEEEcCCC-E
Confidence 98 55555 5556788899987642210 0000 0111 2467999999998887765 5
Q ss_pred EEEECCCC
Q 004290 304 YLMDVNHA 311 (763)
Q Consensus 304 ~iwd~~~~ 311 (763)
.+||+.++
T Consensus 356 ~~~Dl~~g 363 (429)
T PRK01742 356 VKQDLTSG 363 (429)
T ss_pred EEEECCCC
Confidence 55888764
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.2e-13 Score=148.00 Aligned_cols=265 Identities=15% Similarity=0.249 Sum_probs=186.5
Q ss_pred CCCCCCCCchhhhhhccccCC----Ccccccccccchhhhhcc---cccee---ecccc----CceEEEEeCCCCCEEEE
Q 004290 2 ENFPFHDGSIYDMLDTRHTDT----RPDVNHSLQMHSSLVRRL---SQERE---LEGHQ----GCVNAISWNSKGSLLIS 67 (763)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~---l~gH~----~~V~~l~fsp~g~~Las 67 (763)
++..|.+...++|..-++.+. .+..+..|++|+.+.... +++.- |.++. +.=.-++|.....+|++
T Consensus 1103 ~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1103 DNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV 1182 (1387)
T ss_pred cCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe
Confidence 445566777777777666554 578899999999887653 33322 22221 11133567775555555
Q ss_pred EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (763)
Q Consensus 68 gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (763)
++.-..|+|||.....+...+..+....|+++.-+... |++++.|-.||.|++||.+..... ..+...+.|.
T Consensus 1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHN 1254 (1387)
T ss_pred cCCeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccC
Confidence 55578999999999999988877777788888777665 799999999999999999975433 2366778888
Q ss_pred Cc--eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC
Q 004290 148 RR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (763)
Q Consensus 148 ~~--v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p 225 (763)
.. |..+.+.+.+-..+++|+.||.|++||+|...... +.+ +.....-...++++..++
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~~--------iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FLT--------IVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cce--------eeeccccCccceeeeecc
Confidence 87 99999988554569999999999999999853110 000 000000012488999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004290 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (763)
Q Consensus 226 ~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i 305 (763)
+ ..++|+|+. +.|+||++...+ +..+. +.+.. .+...+.+.+++|+|---+|++|+.|.+|.|
T Consensus 1315 h-apiiAsGs~-q~ikIy~~~G~~-l~~~k-----------~n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1315 H-APIIASGSA-QLIKIYSLSGEQ-LNIIK-----------YNPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred C-CCeeeecCc-ceEEEEecChhh-hcccc-----------cCccc---ccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 7 579999998 999999987433 22211 00111 1222335899999999999999999999999
Q ss_pred EECCCC
Q 004290 306 MDVNHA 311 (763)
Q Consensus 306 wd~~~~ 311 (763)
|....+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987664
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.8e-13 Score=122.92 Aligned_cols=231 Identities=15% Similarity=0.196 Sum_probs=155.2
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCC---------Ce-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~---------~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
.|.+-+|+|.+++|+.|+.+|+|-+..+.. ++ .+..+ ++|.++|+.++|.- .+|++|+ ||.|+=
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEEE
Confidence 466778999999999999999999998753 22 34444 79999999999993 5788877 599999
Q ss_pred EECCCCCCCCCCC---CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 122 FNLSRFSGRGLDD---NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 122 wd~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
|..+......-.. ....|.++-.-.-..|++|-..|..+.+| .++.|+.++.||+++++
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~----------------- 147 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGR----------------- 147 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCE-----------------
Confidence 9887532210000 00111222111234689999999665555 55589999999999986
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
......+|+..|.++.--..+ ..+++|+.||++|+||.++++.+..+..-..+ .+ + +.|.
T Consensus 148 --------i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-~~--------l--Rp~~ 207 (325)
T KOG0649|consen 148 --------IQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-NL--------L--RPDW 207 (325)
T ss_pred --------EEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccCh-hh--------c--Cccc
Confidence 223445788899999884433 47999999999999999998866554321111 11 1 2245
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 330 (763)
+.+|.+++-+. .+|++| ..-.+.+|.++... ....+.....+..+.|.
T Consensus 208 g~wigala~~e--dWlvCG-gGp~lslwhLrsse-~t~vfpipa~v~~v~F~ 255 (325)
T KOG0649|consen 208 GKWIGALAVNE--DWLVCG-GGPKLSLWHLRSSE-STCVFPIPARVHLVDFV 255 (325)
T ss_pred CceeEEEeccC--ceEEec-CCCceeEEeccCCC-ceEEEecccceeEeeee
Confidence 55687777654 566655 45678999999954 34444444444445544
No 200
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=5.1e-14 Score=130.21 Aligned_cols=247 Identities=15% Similarity=0.145 Sum_probs=166.3
Q ss_pred hhccccCCCcccccccccchhhhhccccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-------
Q 004290 15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH------- 86 (763)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~------- 86 (763)
.+..+...+.....-+++|. .++.+..-.++ -|...|+.+.--|+ ..|.+=+.|+.+.+|++.-+..+.
T Consensus 22 fqa~~rL~sg~~~G~V~~w~--lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~n 98 (323)
T KOG0322|consen 22 FQANERLMSGLSVGIVKMWV--LQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVN 98 (323)
T ss_pred hccchhhhcccccceEEEEE--eecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecc
Confidence 33334444455566777887 44445555666 46788999998887 567888999999999986522110
Q ss_pred -------EEc--------------------------------------cCCCCceEEEEEeeCCC-CcEEEEEeCCCcEE
Q 004290 87 -------SIE--------------------------------------TGHSANVFCTKFVPETS-DELVVSGAGDAEVR 120 (763)
Q Consensus 87 -------~~~--------------------------------------~~h~~~V~~v~~~p~~~-~~~l~s~s~dg~I~ 120 (763)
.+. .+..+.+.|..+..+.. .-+++.|-++|.|.
T Consensus 99 slgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv 178 (323)
T KOG0322|consen 99 SLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVV 178 (323)
T ss_pred ccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEE
Confidence 000 12224455555433221 23566777899999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
+||+.++.........++.......|.++|.++.|.+.- ..=++|+.+..+..|.+.......+. .....+
T Consensus 179 ~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~--------~~e~~l 249 (323)
T KOG0322|consen 179 IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQI--------RKEITL 249 (323)
T ss_pred EEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccc--------cceEEe
Confidence 999998533222222334455567899999999998733 33347888889999988765311000 001111
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
....|..+.+-|| ++++|+++.|+.||||.-++++++..+ .-|+.
T Consensus 250 -------------knpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa- 294 (323)
T KOG0322|consen 250 -------------KNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA- 294 (323)
T ss_pred -------------cCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-
Confidence 1234677888897 689999999999999999999876544 12554
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
.|++|+|+|+...+++++.|++|.+|++
T Consensus 295 gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 5999999999999999999999999986
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.2e-13 Score=128.80 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=182.6
Q ss_pred cccccccccch---hhhhcc-ccceeeccc-cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC---Cc
Q 004290 24 PDVNHSLQMHS---SLVRRL-SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS---AN 95 (763)
Q Consensus 24 ~~~~~~~~~~~---~~~~~~-~~~~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~---~~ 95 (763)
++-++...+|. ...++. |++.....| ...|.||+|....++|.+|..+++|.+-|+++.+.+..+ .|. +.
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~--~~~~~~~~ 151 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA--NENNNRGD 151 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee--cccCcccc
Confidence 44456666664 345555 777766554 489999999999999999999999999999999988877 344 58
Q ss_pred eEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290 96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 96 V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
|+.+..+|. .+.|++.+.++.|.+||.+...... . ...........+.+.|+|..+.+|++.+..+-+-+|
T Consensus 152 VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~------~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 152 VYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPI------S-LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVF 222 (609)
T ss_pred eeecccCCC--CceEEEEecCceEEEEeccCCCCCC------c-eeeecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence 999999999 7999999999999999998643111 1 122233455678899999999999999999999999
Q ss_pred ECCCCCCCCCCCC------C-Ccccc-------------------eEEEecCCCceeeccCC--C---CCccceEEEEEe
Q 004290 176 DFRQGSSCPPAGS------S-HQECR-------------------NILLDLRCGAKRSLADP--P---KQTLSLKSCDIS 224 (763)
Q Consensus 176 d~~~~~~~~~~~~------~-~~~~~-------------------~~~~~~~~~~~~~~~~~--~---~~~~~v~~i~~~ 224 (763)
|++.......... . ..... .+++++.......+..- + .....+.+++|.
T Consensus 223 D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~ 302 (609)
T KOG4227|consen 223 DRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI 302 (609)
T ss_pred eeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee
Confidence 9998764311100 0 00001 12223222111111111 1 122356788888
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC--CCcccccccc-cccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004290 225 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP--PPCVNYFCPM-HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (763)
Q Consensus 225 p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~ 301 (763)
.+ ..+++|+.+-.|+||.+........+...... ......+..+ .....||.. -++.|.|+|...+|++++-.+
T Consensus 303 ~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~ 379 (609)
T KOG4227|consen 303 DD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVEN 379 (609)
T ss_pred cc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccchhh
Confidence 75 46999999999999998754433322111110 0001111111 122367887 489999999998888888899
Q ss_pred eEEEEECCC
Q 004290 302 HVYLMDVNH 310 (763)
Q Consensus 302 ~i~iwd~~~ 310 (763)
.++||.-..
T Consensus 380 ~~KlWS~~r 388 (609)
T KOG4227|consen 380 SFKLWSDHR 388 (609)
T ss_pred heecccccc
Confidence 999996544
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=1.8e-12 Score=143.39 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=133.2
Q ss_pred EeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe
Q 004290 77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (763)
Q Consensus 77 Wd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 156 (763)
|+. .|..+..+ ..|...|..++.++.. +.+|+|||.||+|++||.+...+.. ...+...++.--..++.++.+.
T Consensus 1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 665 46777777 7899999999999885 6999999999999999998644331 1122333444456788899888
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc-EEEEEe
Q 004290 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG 235 (763)
Q Consensus 157 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~-~l~sgs 235 (763)
+ +++.+|.++.||.|++.++....... ..+.. ..+.........|..-+|...... .++.+.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~~----------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVATQ----------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEcccccccc------ceeee----------eecccccCCCceEEeecccccccceeEEEEE
Confidence 8 67889999999999999987742110 00000 000011111122333344443344 788888
Q ss_pred CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.-+.|..||+++...+..+... ...+.|++++.+|.+.++++|+..|.+.+||++-.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~-------------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-------------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred eccceEEecchhhhhHHhhhcC-------------------ccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 8999999999987655443211 12225999999999999999999999999999873
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=5.8e-12 Score=122.49 Aligned_cols=217 Identities=20% Similarity=0.319 Sum_probs=149.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEEEEeeCCCCcEEEEEe--CCCcEEEEECCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSR 126 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~l~s~s--~dg~I~iwd~~~ 126 (763)
..|.+|.++ -++|+.+=.+ .|.|||+.+.+.++++... +...+. +++|+.++.+|+.-+ ..|.|.+||+.+
T Consensus 88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~--AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC--ALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceE--eeccCCCCceEEecCCCCCceEEEEEccc
Confidence 457777765 4567777665 5999999999999998544 333444 455543356777633 368899999987
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
.++...+.+|++.+-+|+|++ +|.+|||+++.|+ |||+.+.+++. ++.++.|-
T Consensus 163 ----------l~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k--------------l~eFRRG~- 216 (391)
T KOG2110|consen 163 ----------LQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK--------------LYEFRRGT- 216 (391)
T ss_pred ----------ceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE--------------eeeeeCCc-
Confidence 356788899999999999999 7799999999997 78999988763 34444332
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC---------------CC-------c
Q 004290 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP---------------PP-------C 263 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~---------------~~-------~ 263 (763)
....|.+++|+|+ +.+|++.++.++|+||.+.... ......+... |. .
T Consensus 217 --------~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~ 286 (391)
T KOG2110|consen 217 --------YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ 286 (391)
T ss_pred --------eeeEEEEEEECCC-CCeEEEecCCCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence 1457899999998 6899999999999999987643 1111100000 00 0
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+.|...++...+.. .+..+.-.+....+.+++.||.++.|.+.-
T Consensus 287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 111222222222222 244444346788999999999999998876
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.8e-13 Score=144.62 Aligned_cols=235 Identities=12% Similarity=0.097 Sum_probs=150.3
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeE--EEEEccCCCCceEEEEEe
Q 004290 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKL--LHSIETGHSANVFCTKFV 102 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~ 102 (763)
..|.+++..- ...+.+..|...|.+.+|+|||+.||.++.+ ..|++||+.+++. +..+ .+| ...++|+
T Consensus 184 ~~i~i~d~dg---~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~---~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYDG---FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGH---NGAPAFS 256 (429)
T ss_pred EEEEEECCCC---CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCc---cCceeEC
Confidence 4566665322 2245677888899999999999999987654 3699999988754 3222 333 4468999
Q ss_pred eCCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 103 PETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 103 p~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
|+ ++.|+.+ +.+|.+.||.+....+ ....+..+...+....|+|++..+++++..+|...+|++....
T Consensus 257 PD--G~~La~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 257 PD--GSRLAFASSKDGVLNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred CC--CCEEEEEEecCCcEEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 99 6777765 4688776664432111 1344555677788999999554455555567888998875432
Q ss_pred CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.. ...+ . +.. ...+|+|+ +++|+..+.++ +.+||+.+++.....
T Consensus 326 ~~---------------------~~~l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt------- 369 (429)
T PRK01742 326 GG---------------------ASLV-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLS------- 369 (429)
T ss_pred CC---------------------eEEe-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEec-------
Confidence 11 0001 0 111 34679997 67887777765 455999876421100
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC--CCCccceEeecCCCCeeeeeccC
Q 004290 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
... ....+.|+|||++|+.++.++.+.+|.+. ++........+.......+|+|.
T Consensus 370 -------------~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 370 -------------STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -------------CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 001 13457799999999999999988888764 33333333334455666778875
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.3e-13 Score=133.44 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=66.6
Q ss_pred cccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEE-ecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCC
Q 004290 625 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV 702 (763)
Q Consensus 625 ~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l-~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~ 702 (763)
.++++. -|.||+|+|-|+.||.|-|++..+.+.++.. ++|...|+.|+|+|+.+++++.+.|..+.|-.+.-..
T Consensus 283 siSsl~----VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 283 SISSLA----VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred cceeEE----EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 455566 7999999999999999999999999988766 6899999999999999999999999999998877654
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.2e-12 Score=137.51 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=127.2
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
.|.-.++|.++||+++++|+|..||+|.+|.--. .....++..-|...|+++.|+++ |.+|+||+..+.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEEEEEee
Confidence 4677799999999999999999999999996432 22333343678899999999999 899999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
.+++ .+-+..-..+|..+.++| ++.+.+....|..|.+....+......+ ++-..+- ..
T Consensus 281 ~T~~-----------kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tI-sgi~~~~------~~-- 339 (792)
T KOG1963|consen 281 ETGK-----------KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTI-SGIKPPT------PS-- 339 (792)
T ss_pred cCCC-----------cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhc-cCccCCC------cc--
Confidence 9854 233455678999999999 5677778888999999877554422110 0000000 00
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
.......-.+.++++|. .+.++-.+..+.|.+||+-+...+..+
T Consensus 340 -----~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 340 -----TKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred -----ccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeE
Confidence 00112334567778884 567777788888888888776655443
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=2.3e-11 Score=118.33 Aligned_cols=194 Identities=11% Similarity=0.149 Sum_probs=141.2
Q ss_pred eEEEEeCCCCCEEEEEeCC--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 53 VNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
|--+-|+ ..++|..+.+ +.+++.+++.+..+..+. ...+|.+|.++.+ .|+++-.+ .|+|||++..
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~M--- 116 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDM--- 116 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc----eEEEEEcc-cEEEEecccc---
Confidence 4445555 3466655544 459999999888888773 4567999999865 55555554 4999999972
Q ss_pred CCCCCCCCCceeee---cccCceeEEEEecCCCCEEEE-Ee-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290 131 GLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 131 ~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~s-~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
+.+.++. .+...+..+.+++. ..+++- ++ ..|.|.+||+.+-+.
T Consensus 117 -------klLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl~~----------------------- 165 (391)
T KOG2110|consen 117 -------KLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINLQP----------------------- 165 (391)
T ss_pred -------eeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEccccee-----------------------
Confidence 3344443 34445555555552 235543 22 358999999877542
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
+.....|.+.+.+++|+++ |.+||+++..|+ ||||.+.+++.+..|... .....|.+
T Consensus 166 --v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG-------------------~~~~~IyS 223 (391)
T KOG2110|consen 166 --VNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRG-------------------TYPVSIYS 223 (391)
T ss_pred --eeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCC-------------------ceeeEEEE
Confidence 2233468899999999997 799999999998 899999999888776432 22336999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
++|+|++.+|.+.+..++|++|.+...
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999999999874
No 208
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=4.7e-12 Score=121.65 Aligned_cols=234 Identities=15% Similarity=0.245 Sum_probs=154.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEccCCC------------CceEEEEEeeCCCCcEEEEE
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHS------------ANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~----~~~~~~~h~------------~~V~~v~~~p~~~~~~l~s~ 113 (763)
.+-|.++.|...|.+||+|..+|.|.++.-+.... ..+..+.|. ..|..+.|.++.+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46789999999999999999999999997553321 222224443 56889999998777788888
Q ss_pred eCCCcEEEEECCCCCCCCCC-------------------------CCCCCCceee-ecccCceeEEEEecCCCCEEEEEe
Q 004290 114 AGDAEVRLFNLSRFSGRGLD-------------------------DNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~-------------------------~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
..|++|++|.+......... .....|.+.+ .+|.--|++|.++. +...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 89999999999864332200 0001112222 35778899999998 44566554
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.|=.|.+|++.-.... .-+.|.++.... .-+..|++..|+|..-++|+-.++.|+||+-|+|.
T Consensus 183 DdLRINLWnlei~d~s-----------FnIVDIKP~nmE------eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQS-----------FNIVDIKPANME------ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceeeeeccccccCCc-----------eeEEEccccCHH------HHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6788999998765422 334444432221 12456889999998888999999999999999995
Q ss_pred CCCCcc----cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 248 LPPLTS----CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 248 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
...... +..+.. +.....| . +--. .|..+.|+++|+|+++-. --+|++||++...
T Consensus 246 ~aLCd~hsKlfEeped-p~~rsff-s------eiIs-SISDvKFs~sGryilsRD-yltvk~wD~nme~ 304 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPED-PSSRSFF-S------EIIS-SISDVKFSHSGRYILSRD-YLTVKLWDLNMEA 304 (433)
T ss_pred hhhhcchhhhhccccC-CcchhhH-H------HHhh-hhhceEEccCCcEEEEec-cceeEEEeccccC
Confidence 432111 111111 1111111 0 0111 488999999999987542 2689999997743
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=3.9e-12 Score=129.10 Aligned_cols=70 Identities=21% Similarity=0.456 Sum_probs=62.8
Q ss_pred cccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCC---------------------------------
Q 004290 634 FLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF--------------------------------- 680 (763)
Q Consensus 634 ~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~--------------------------------- 680 (763)
+|||||+|||+|++|--|.||.+...++|..-+||.++|+.|+|-|-
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence 39999999999999999999999999999999999999999999831
Q ss_pred --C-------------CeEEEEeCCCcEEEEcCCCCCC
Q 004290 681 --D-------------CVVATSGIDNTIKIWTPSASVP 703 (763)
Q Consensus 681 --~-------------~~laS~s~D~~IrvW~~~~~~~ 703 (763)
+ -.|.|.|.|-.++|||+.....
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 1588999999999999987743
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.4e-12 Score=117.76 Aligned_cols=211 Identities=18% Similarity=0.229 Sum_probs=145.0
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE------E-EEEccCCC-----CceEEEEEeeCCCCc
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------L-HSIETGHS-----ANVFCTKFVPETSDE 108 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~------~-~~~~~~h~-----~~V~~v~~~p~~~~~ 108 (763)
.++...++|.++|+.++|. ..+|++|+. |.|+-|.+..... + .....-|. -.|+++-..|.. +
T Consensus 53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--n 127 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--N 127 (325)
T ss_pred cceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--C
Confidence 4455669999999999998 456777765 9999998754321 1 11111222 468999999984 5
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 188 (763)
-++.++.|+.++.||++++ +..+.+++|++.|.++.--..++ .++||++||++++||+++.+....+..
T Consensus 128 Si~~AgGD~~~y~~dlE~G----------~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDG----------RIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred cEEEecCCeEEEEEEecCC----------EEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEecc
Confidence 5556668999999999974 34788999999999998854354 455999999999999999885422111
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (763)
- . ..-...+.....|.+++.+. .+|++|+ ...+.+|.++..+....++-
T Consensus 197 y-----------k----~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t~vfpi------------ 245 (325)
T KOG0649|consen 197 Y-----------K----NPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSESTCVFPI------------ 245 (325)
T ss_pred c-----------c----ChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCceEEEec------------
Confidence 0 0 00111122345677888765 4888776 46789999998765433321
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
..++..+.|-.| .+++++..+.|.-|.+..
T Consensus 246 ----------pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 246 ----------PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ----------ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 114677777554 678888888899998765
No 211
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=3.3e-12 Score=122.79 Aligned_cols=245 Identities=19% Similarity=0.191 Sum_probs=178.9
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEe-CCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd-~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d 116 (763)
.+..+++.++||.+.|+....-|...-+++.+.|.++|||- .+.++.-..+......+++++.+.++ ...|+.|-..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEec
Confidence 45567788999999999999989888899999999999995 44555555554445688999999999 5899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC-----------
Q 004290 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP----------- 185 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------- 185 (763)
|++.-+.+..- -++....+....|..++..+.|+- ...++++.+.|..+.---.+.+..+..
T Consensus 90 gtvtefs~sed------fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 90 GTVTEFALSED------FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred ceEEEEEhhhh------hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 99998887641 222345667778999999999987 567888999988775544444443210
Q ss_pred -----CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC
Q 004290 186 -----AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (763)
Q Consensus 186 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (763)
...+....+.....+.......+....+|...+++++|.|. ..+|.+|..|..+.+||+--.+-.
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~--------- 232 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGT--------- 232 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcce---------
Confidence 00111112222222222333445566789999999999996 679999999999999999754311
Q ss_pred CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.....||.. .|..+...+--+.|++++.||.|.+|+++...
T Consensus 233 ----------~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 233 ----------AYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ----------eeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 112245655 48888888888889999999999999998843
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=9.9e-12 Score=121.72 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=69.6
Q ss_pred cccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEE-EecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCC
Q 004290 623 CNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKM-LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 701 (763)
Q Consensus 623 ~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~-l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~ 701 (763)
.+.++++. .-|+|++|++|..-|.+..+|..+++++.. |+|-.+.|+++..||..++|||+|.|+-|||+|+++.
T Consensus 247 E~~is~~~----l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 247 ENPISSTG----LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cCcceeee----ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 34455555 778999999999999999999999999877 9999999999999999999999999999999999996
Q ss_pred CCc
Q 004290 702 VPS 704 (763)
Q Consensus 702 ~~~ 704 (763)
..+
T Consensus 323 kll 325 (412)
T KOG3881|consen 323 KLL 325 (412)
T ss_pred hhh
Confidence 544
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.2e-11 Score=124.66 Aligned_cols=229 Identities=16% Similarity=0.183 Sum_probs=148.4
Q ss_pred cccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc
Q 004290 30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108 (763)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 108 (763)
++-.-...+++.++..|. |....+.|..+|||+|| |||...-.|++||+.+-... |..+-...|..+....+. -.
T Consensus 32 lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD-~S 107 (703)
T KOG2321|consen 32 LKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDD-YS 107 (703)
T ss_pred HhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccc-hh
Confidence 333344566677777775 78888999999999965 68889999999999865433 322223334333333331 44
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 188 (763)
.++--..|++|.+..--- .+.-..-...-.+|+++..+-.++ .++....|+-+++..+.-+
T Consensus 108 K~v~L~~DR~IefHak~G-------------~hy~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL----- 168 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAKYG-------------RHYRTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFL----- 168 (703)
T ss_pred hheEeecCceeeehhhcC-------------eeeeeecCcCCccccccCCCccEE-EeecCcceEEEEccccccc-----
Confidence 555556677776654331 000001122335566654344455 4445567999999988633
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (763)
..+......+++|..++.+ .+|++|+.+|.|..||.|+...+.++..... +
T Consensus 169 --------------------~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----v---- 219 (703)
T KOG2321|consen 169 --------------------NPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASS----V---- 219 (703)
T ss_pred --------------------cccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccc----c----
Confidence 1112234678999999974 6999999999999999998876655432211 0
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+.+. .+.....|+++.|+.+|-.+++|+.+|.|+|||++...
T Consensus 220 ~s~p--g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 220 NSHP--GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred CCCc--cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 0111 11222359999999999999999999999999999843
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=5.9e-11 Score=124.58 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=121.0
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290 63 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 63 ~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
+++ ++-..++.|.|.|..+.+.+.++..+ ...-..+.|+|+ ++++++++.||.|.++|+.+. +.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~----------~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATG----------KVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT---SSEEEEEETTSEEEEEETTSS----------SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCC--CCEEEEEcCCCeEEEEECCcc----------cEEE
Confidence 444 45667899999999999999999433 333456789999 799999999999999999973 3355
Q ss_pred eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004290 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
.+.. .....++++++++..++++....+.+.++|.++.+... .+ ..+.. . .......+.++
T Consensus 73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~-----------~I---~~~~~---~-~~~~~~Rv~aI 133 (369)
T PF02239_consen 73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK-----------TI---PTGGM---P-VDGPESRVAAI 133 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE-----------EE---E--EE-----TTTS---EEEE
T ss_pred EEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee-----------ec---ccccc---c-ccccCCCceeE
Confidence 5653 44578899999554344455578999999998876331 00 00000 0 00023456777
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CC
Q 004290 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SG 300 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d 300 (763)
..+|.++.++++--.-+.|.+.|....+.+.. ... ..........|+|+++|++++. .+
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-----------~~i---------~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-----------TTI---------KVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-----------EEE---------E--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccccccce-----------eee---------cccccccccccCcccceeeeccccc
Confidence 77886443444444458888888776432210 000 0011356788999999987765 47
Q ss_pred CeEEEEECCCCC
Q 004290 301 EHVYLMDVNHAG 312 (763)
Q Consensus 301 ~~i~iwd~~~~~ 312 (763)
+.|-++|..+++
T Consensus 194 n~i~viD~~~~k 205 (369)
T PF02239_consen 194 NKIAVIDTKTGK 205 (369)
T ss_dssp TEEEEEETTTTE
T ss_pred ceeEEEeeccce
Confidence 899999998854
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=3.9e-12 Score=121.24 Aligned_cols=206 Identities=15% Similarity=0.163 Sum_probs=152.1
Q ss_pred ccccccccchhhhhc-cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC-CCCe--EEEEEccCCCCceEEEE
Q 004290 25 DVNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTK 100 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~-~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~-~~~~--~~~~~~~~h~~~V~~v~ 100 (763)
.-++.+.|+...-.. ++..++|+.|...|++|+|+|..+.|++|+.|....||.. ..++ ....+ ..+....+++.
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~ 107 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVK 107 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEe
Confidence 346788999887777 8999999999999999999999999999999999999998 4443 33334 46788999999
Q ss_pred EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
|+|. ++.|++|+.-+.|.||-++..+.- +-..+.-+.+...|.++.|+| ++-++++|+.|+.+++|..--.
T Consensus 108 WsP~--enkFAVgSgar~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 108 WSPK--ENKFAVGSGARLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred ecCc--CceEEeccCccEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeee
Confidence 9999 799999999999999999863211 111223455778899999999 6689999999999999964322
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
..-... ...-|+.+...-..+.+.....+.+..+.|+|+ |+.|+-.+.|..+.+-|....
T Consensus 179 ~Vdekp-------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 179 GVDEKP-------APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccccCC-------CCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence 110000 000011111001112222245678999999997 789999999999999988754
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4.2e-11 Score=130.36 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=143.0
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
..|.+++.. ....+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... + ....+...+.+|+|+
T Consensus 184 ~~l~i~D~~---g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSD---GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCC---CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC
Confidence 345555532 23345566777889999999999999987743 469999998876543 2 234445568899999
Q ss_pred CCCcEE-EEEeCCC--cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCc--EEEEECC
Q 004290 105 TSDELV-VSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGT--LRQHDFR 178 (763)
Q Consensus 105 ~~~~~l-~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~--i~iwd~~ 178 (763)
|+.| ++.+.++ .|++||+..+. ...+..+.......+|+|++ ..|+.++ .+|. |+++|+.
T Consensus 259 --G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 259 --GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred --CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECC
Confidence 5655 4556665 48999987632 33344455556778999954 5555444 4555 5666665
Q ss_pred CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCCCCcccC
Q 004290 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~~~ 255 (763)
+++.. .+.. ........+|+|+ +++|+..+.++ .|.+||+.+++.. .+
T Consensus 325 ~g~~~-----------------------~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L- 375 (433)
T PRK04922 325 GGSAE-----------------------RLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-TL- 375 (433)
T ss_pred CCCeE-----------------------Eeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-EC-
Confidence 54311 1110 0112346799997 56776655433 5999999876422 11
Q ss_pred CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
. .+. ......|+|||++|+..+. .+.|+++++.... ..............+|+|
T Consensus 376 ------------t------~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 376 ------------T------PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP 432 (433)
T ss_pred ------------C------CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence 0 011 1345689999999887776 3468888886532 222222233444555655
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.9e-10 Score=124.70 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=106.5
Q ss_pred cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (763)
Q Consensus 73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (763)
.|.+||....... .+ ..+...+.+.+|+|+ |+.|+..+. +..|.+|++..+... .+..+ .+.
T Consensus 180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~--------~l~~~---~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVR--------QVASF---PRH 244 (429)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeE--------EccCC---CCC
Confidence 6889998765433 33 346678999999999 788876542 457999999764311 12223 333
Q ss_pred eeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
+..++|+|++..++++.+.+| .|++||+.+++.. .+. .+...+....|+|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt---~~~~~~~~~~wSPD- 297 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVT---DGRSNNTEPTWFPD- 297 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------Ecc---CCCCCcCceEECCC-
Confidence 556899996544555555555 4888998776421 111 11224567899998
Q ss_pred CcEEEEEeC-CCcEEEE--eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---C
Q 004290 228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E 301 (763)
Q Consensus 228 ~~~l~sgs~-Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~ 301 (763)
++.|+..+. ++...|| |+.++... .+ ...+. ......|+|||++|+..+.+ .
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l------------------t~~~~---~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQ-RI------------------TWEGS---QNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeE-Ee------------------ecCCC---CccCEEECCCCCEEEEEEccCCCc
Confidence 566665554 4555555 55543211 00 00111 24568899999999877653 3
Q ss_pred eEEEEECCCC
Q 004290 302 HVYLMDVNHA 311 (763)
Q Consensus 302 ~i~iwd~~~~ 311 (763)
.|++||+.++
T Consensus 356 ~I~~~dl~~g 365 (429)
T PRK03629 356 HIAKQDLATG 365 (429)
T ss_pred eEEEEECCCC
Confidence 5777777653
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=1.5e-12 Score=129.80 Aligned_cols=214 Identities=15% Similarity=0.188 Sum_probs=165.8
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
+-..+.++.+|.+|+.|+..|.|-.+|+.++.....+ .-...|.++.|..+ .++||++ ....++|||-.-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn--eq~~AVA-QK~y~yvYD~~G----- 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN--EQFFAVA-QKKYVYVYDNNG----- 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc--hHHHHhh-hhceEEEecCCC-----
Confidence 4467889999999999999999999999999988887 34567999999988 4566555 578899999773
Q ss_pred CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
..++.++.| ..|..|.|-| ...+|++++..|.++.-|+.+++.+.. +
T Consensus 201 ------tElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~-------------------------~ 247 (545)
T KOG1272|consen 201 ------TELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS-------------------------I 247 (545)
T ss_pred ------cEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHH-------------------------H
Confidence 235666644 4699999999 558899999999999999999875421 1
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
....+.+..++-+|.+ ..+-+|...|+|.+|...+..++..+ --|.+ +|.+|++.++|
T Consensus 248 ~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~~G 305 (545)
T KOG1272|consen 248 RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDRGG 305 (545)
T ss_pred HccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECCCC
Confidence 1234566778888974 68899999999999999887655333 11444 69999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 292 EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
+|+++++.|..++|||++.......... ......+++|.
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 9999999999999999999664433333 44444455543
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.3e-10 Score=126.69 Aligned_cols=224 Identities=11% Similarity=0.081 Sum_probs=141.1
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCC
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~d 116 (763)
...+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++... + ..+.+.+.+.+|+|+ |+.| ++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V-GNFPGMTFAPRFSPD--GRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e-ecCCCcccCcEECCC--CCEEEEEEecC
Confidence 344567788889999999999999987764 4689999999886543 3 355667889999999 5655 466666
Q ss_pred Cc--EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCc
Q 004290 117 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 117 g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~ 191 (763)
+. |.+||+..+. ...+..+........|+|+ ++.|+..+ .+| .|+++|+..++.
T Consensus 268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~--------- 326 (435)
T PRK05137 268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP--------- 326 (435)
T ss_pred CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe---------
Confidence 66 6667776532 3445555666778899995 45555544 344 577778765431
Q ss_pred ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCcccccc
Q 004290 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 268 (763)
..+.. ....+....|+|+ ++.|+....+ ..|.+||+..+.. .. +.
T Consensus 327 --------------~~lt~---~~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~~-------------lt 374 (435)
T PRK05137 327 --------------RRISF---GGGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-RI-------------LT 374 (435)
T ss_pred --------------EEeec---CCCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce-Ee-------------cc
Confidence 11111 1223456789998 5677665543 3577888754321 10 00
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCC------CeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 269 ~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
.+. .+..+.|+|||++|+..+.+ ..++++++..+... .. .........+|+|.
T Consensus 375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l-~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EV-PTPGDASDPAWSPL 433 (435)
T ss_pred ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ec-cCCCCccCcccCCC
Confidence 111 25668899999998876652 36888888764432 22 12223444556653
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=124.49 Aligned_cols=181 Identities=18% Similarity=0.266 Sum_probs=127.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC----
Q 004290 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---- 132 (763)
Q Consensus 60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~---- 132 (763)
|.+--|+.|-.-|.|.+.|....+..+.+. .-....|+|++|.|.. ..+++.+-.+|.+.++|....-+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence 456667788788899998876533222110 1134789999999986 67888888899999998753211100
Q ss_pred --------------CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 133 --------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 133 --------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
......|+..+.--.+.|+..+|+| ++.+||+.+.||.+||||..+.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl--------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL--------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence 0011133444444466899999999 7899999999999999999887632
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
.....--+.+.|++|+|| +++|++|+.|..|.||.+...+.+.. .+||.
T Consensus 326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVAR--------------------GqGHk 374 (636)
T KOG2394|consen 326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVAR--------------------GQGHK 374 (636)
T ss_pred ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEe--------------------ccccc
Confidence 011112356899999998 79999999999999999987654432 15676
Q ss_pred ccceeEEEEcC
Q 004290 279 SLHLTHVTFSP 289 (763)
Q Consensus 279 ~~~i~~v~~sp 289 (763)
+ +|+.|+|.|
T Consensus 375 S-WVs~VaFDp 384 (636)
T KOG2394|consen 375 S-WVSVVAFDP 384 (636)
T ss_pred c-ceeeEeecc
Confidence 6 688888873
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=5.8e-11 Score=115.05 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=137.2
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
+-.+..++|++.-.-+|++..|-.|++||-.. ++...+.......|+|++|-|.+ +.-|+.|+.. -|.||.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecc-eeEEEEcCcccc
Confidence 35688999999666788999999999999765 55555544556789999999997 7788888865 589998874221
Q ss_pred CCC--CCCCCCC--ceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 130 RGL--DDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 130 ~~~--~~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
... ......+ +....+| .+|++|.|.+ ++..+++++. |..|.|||..++...+..
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------ 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI------------------ 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc------------------
Confidence 110 0001111 2223445 6899999999 4567777764 678999999998744211
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
+...+.+.-+.|+|+ +.+|+++.-|+..++|... +..... .. -..+.|.
T Consensus 235 -------~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~wt~er-------------w~---------lgsgrvq 284 (445)
T KOG2139|consen 235 -------PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSWTKER-------------WI---------LGSGRVQ 284 (445)
T ss_pred -------ccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccceecc-------------ee---------ccCCcee
Confidence 123456788999998 7899999999999999543 322110 00 1111599
Q ss_pred EEEEcCCCCEEEEEeC
Q 004290 284 HVTFSPNGEEVLLSYS 299 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~ 299 (763)
..+|+|+|++|+.+..
T Consensus 285 tacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS 300 (445)
T ss_pred eeeecCCCCEEEEEEc
Confidence 9999999998776654
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.8e-10 Score=124.80 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=136.0
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEe---CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCC--
Q 004290 44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDA-- 117 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs---~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg-- 117 (763)
+.+..+...+.+.+|||||+.||..+ .+..|.+||+.+++..... ...+.+....|+|+ |+.|+.. +.++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD--G~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD--GSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence 34455667899999999999998654 2457999999887643322 23334557899999 6766654 4455
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEE--ECCCCCCCCCCCCCCcccc
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH--DFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~~~~~~~ 194 (763)
.|.+||+..+. ...+..+...+....|+|+ ++.|+..+ .++...+| |+.+++.
T Consensus 268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~------------ 323 (429)
T PRK03629 268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAP------------ 323 (429)
T ss_pred EEEEEECCCCC-----------EEEccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCe------------
Confidence 48889987632 2333344456788999995 45554444 34554555 5544421
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCccccccccc
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (763)
..+.. .........|+|+ +++|+..+.+ ..|.+||+.++... .+ .
T Consensus 324 -----------~~lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L-------------t--- 371 (429)
T PRK03629 324 -----------QRITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-------------T--- 371 (429)
T ss_pred -----------EEeec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-Ee-------------C---
Confidence 11110 1122446789998 5677665443 35888998876421 10 0
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 272 ~~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
... ......|+|||++|+.++.++ .++++++.. ........+.......+|+|.
T Consensus 372 ---~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 372 ---DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ---CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCCC
Confidence 001 133567999999999998865 377888855 333333334445566677763
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.1e-10 Score=124.49 Aligned_cols=227 Identities=10% Similarity=0.070 Sum_probs=139.8
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCC
Q 004290 42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA 117 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg 117 (763)
..+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... + ....+.+.+..|+|+ ++.|+ +.+.++
T Consensus 187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~g 262 (427)
T PRK02889 187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRDG 262 (427)
T ss_pred CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccCC
Confidence 334556678889999999999999877643 459999999887543 2 233455678999999 66665 667888
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccce
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRN 195 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 195 (763)
...||.+....+ ....+..+........|+|++..++++...+|...+|.+. .++.
T Consensus 263 ~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~------------- 320 (427)
T PRK02889 263 NSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA------------- 320 (427)
T ss_pred CceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-------------
Confidence 877777653211 1334444555567789999554444444445666777654 2220
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (763)
..+.. .+ ......+|+|+ +++|+..+.++ .|.+||+.+++... + .
T Consensus 321 ----------~~lt~-~g--~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~-l-------------t---- 368 (427)
T PRK02889 321 ----------QRVTF-TG--SYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA-L-------------T---- 368 (427)
T ss_pred ----------EEEec-CC--CCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE-c-------------c----
Confidence 01110 01 12235689997 67877666554 59999998764211 0 0
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
.+. ......|+|||++|+.++.++ .+++.++.. ........+.......+|+|.
T Consensus 369 --~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 --DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --CCC---CccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecCCCCCCCCccCCC
Confidence 000 135578999999999887643 466666643 333333333445566677764
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=2.6e-10 Score=109.01 Aligned_cols=180 Identities=9% Similarity=0.175 Sum_probs=129.4
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc--Cc
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RR 149 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~ 149 (763)
..|.|||=...+++.++ ....+|.++.+.++ .|+..- .+.|+||.+...- +.++.+.... ..
T Consensus 75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~---------k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNP---------KLLHVIETRSNPKG 138 (346)
T ss_pred ceEEEEecccCcEEEEE--EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCCh---------hheeeeecccCCCc
Confidence 46999997777788777 46789999999987 444443 6789999998421 2233333222 22
Q ss_pred eeEEEEecCCCCEEEE-EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC
Q 004290 150 VKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 228 (763)
+.++.-+. +..+||. |-.-|.|+|-|+...+.- .-...+.|...|.|++++-+ |
T Consensus 139 lC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~s~Iacv~Ln~~-G 193 (346)
T KOG2111|consen 139 LCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHDSDIACVALNLQ-G 193 (346)
T ss_pred eEeecCCC-CceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcccCceeEEEEcCC-c
Confidence 33333222 2234433 334689999998876521 01122468889999999997 7
Q ss_pred cEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004290 229 HLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (763)
Q Consensus 229 ~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd 307 (763)
.++|++|..|+ |||||..++..+.++. +|.....|.+++|||++.+|+++|..|+|+||.
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~R-------------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELR-------------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeee-------------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 89999999998 8999999998776553 344444699999999999999999999999999
Q ss_pred CCCC
Q 004290 308 VNHA 311 (763)
Q Consensus 308 ~~~~ 311 (763)
+...
T Consensus 255 l~~~ 258 (346)
T KOG2111|consen 255 LRDT 258 (346)
T ss_pred eecC
Confidence 9874
No 225
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=123.18 Aligned_cols=202 Identities=15% Similarity=0.182 Sum_probs=140.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004290 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 142 (763)
..|+.++.||.+.|.+- .++.-..+ ..|.+.|.+-.|+|+ |.-|++++.||.|++|.-.- -...+
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG-----------MLRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG-----------MLRST 140 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc-----------hHHHH
Confidence 57888899999999873 45555566 789999999999999 79999999999999998652 12334
Q ss_pred eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEE
Q 004290 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (763)
Q Consensus 143 ~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 222 (763)
+.....+|+|++|.|+..+.+++.+ +.+.|=-+..... .+- -..|.+-|.++.
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k------------~i~-------------WkAHDGiiL~~~ 193 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK------------IIR-------------WRAHDGLVLSLS 193 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc------------eeE-------------EeccCcEEEEee
Confidence 4556789999999997777776655 4555544433221 111 235778899999
Q ss_pred EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCe
Q 004290 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (763)
Q Consensus 223 ~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~ 302 (763)
|+|. .+++++|+.|...+|||........+ ..|.. +|++|+|.|+ +.++.++ -++
T Consensus 194 W~~~-s~lI~sgGED~kfKvWD~~G~~Lf~S---------------------~~~ey-~ITSva~npd-~~~~v~S-~nt 248 (737)
T KOG1524|consen 194 WSTQ-SNIIASGGEDFRFKIWDAQGANLFTS---------------------AAEEY-AITSVAFNPE-KDYLLWS-YNT 248 (737)
T ss_pred cCcc-ccceeecCCceeEEeecccCcccccC---------------------Chhcc-ceeeeeeccc-cceeeee-eee
Confidence 9997 68999999999999999864321111 11333 6999999999 4344443 334
Q ss_pred EEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCCC
Q 004290 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (763)
Q Consensus 303 i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 342 (763)
+++=..+ .+.+-.++|+|++..++.....
T Consensus 249 ~R~~~p~-----------~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 249 ARFSSPR-----------VGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred eeecCCC-----------ccceEEEEEcCCCceeeccccC
Confidence 4422222 2345568899987776555443
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=9.2e-11 Score=115.05 Aligned_cols=231 Identities=11% Similarity=0.095 Sum_probs=155.0
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC--CcEE
Q 004290 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVR 120 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--g~I~ 120 (763)
.+-++.|..++.. || .|++|-.+|.+.+|..+.+. .+..+ ..+ ..+..|.-+|.. ..++++|+.. ..++
T Consensus 102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATG-PGLYDVRQTDTD-PYIVATGGKENINELK 176 (412)
T ss_pred ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee-ecC-CceeeeccCCCC-CceEecCchhccccee
Confidence 3344555555543 33 57778888999999988432 22333 222 567778777764 5678889998 8899
Q ss_pred EEECCCCCCCCCCCCCCCCceeeec--ccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
|||+.... +.+.... +-...-+ -.-.++++.|-+.. ...|++++.-+.+++||.+.+..+
T Consensus 177 iwdle~~~-qiw~aKN--vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP-------------- 239 (412)
T KOG3881|consen 177 IWDLEQSK-QIWSAKN--VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP-------------- 239 (412)
T ss_pred eeecccce-eeeeccC--CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--------------
Confidence 99999641 1110000 0000000 12346778888731 578999999999999999976533
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
+..+.-...+++++...|. ++.+++|..-+.+..||++.+..+.... .|.
T Consensus 240 ----------V~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------------------kg~ 289 (412)
T KOG3881|consen 240 ----------VAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGL-------------------KGI 289 (412)
T ss_pred ----------eeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeecccc-------------------CCc
Confidence 3333334668999999997 7899999999999999999886543210 223
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
.+ .|++|..+|.+++|++++-|..|+|+|+.+.+.....|. ....+.+-+.+
T Consensus 290 tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 290 TG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred cC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 33 599999999999999999999999999999443333333 33344444444
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3.3e-10 Score=123.38 Aligned_cols=176 Identities=9% Similarity=0.070 Sum_probs=111.0
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
..|.+||..... .+.+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+..+. ...+..+.+
T Consensus 184 ~~l~i~D~~g~~-~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGYN-PQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRG 248 (433)
T ss_pred EEEEEECCCCCC-ceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCC
Confidence 468999986443 3445 456778999999999 7888877643 469999997643 222333344
Q ss_pred ceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
....++|+|++..++++.+.+| .|++||+.+++.. .+. .+.......+|+|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD 302 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD 302 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence 5567899996655666666666 4889998776421 111 11122356789998
Q ss_pred CCcEEEEEe-CCCc--EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--
Q 004290 227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (763)
Q Consensus 227 ~~~~l~sgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~-- 301 (763)
++.|+..+ .++. |.++|+.+++... + ...+. ....++|+|||++|+..+.++
T Consensus 303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~~-l------------------t~~g~---~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 303 -GKSIYFTSDRGGRPQIYRVAASGGSAER-L------------------TFQGN---YNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCeEE-e------------------ecCCC---CccCEEECCCCCEEEEEECCCCc
Confidence 56666555 4455 5556665543110 0 00111 244689999999998776533
Q ss_pred -eEEEEECCCC
Q 004290 302 -HVYLMDVNHA 311 (763)
Q Consensus 302 -~i~iwd~~~~ 311 (763)
.|++||+.++
T Consensus 360 ~~I~v~d~~~g 370 (433)
T PRK04922 360 YRIAVMDLSTG 370 (433)
T ss_pred eeEEEEECCCC
Confidence 6888888663
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1e-09 Score=119.19 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=107.6
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
..|.+||.. +.....+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+..+. ...+....+
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g 240 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKG 240 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 457777764 4444444 467778999999999 7888877643 359999998643 222333445
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
.+...+|+|++..++++.+.+|...+|.+. .+.. ..+.. +........|+|+
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----------------------~~lt~---~~~~~~~~~wSpD 294 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-----------------------RRLTQ---SSGIDTEPFFSPD 294 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-----------------------EECCC---CCCCCcCeEEcCC
Confidence 567889999655555677888887776543 3221 01111 1123456789998
Q ss_pred CCcEEEEEe-CCCcEEEEeCC--CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--
Q 004290 227 RPHLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (763)
Q Consensus 227 ~~~~l~sgs-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~-- 301 (763)
++.|+..+ .++...||.+. .+... . + .+ .+. .....+|+|||++|+..+.++
T Consensus 295 -G~~l~f~s~~~g~~~Iy~~~~~~g~~~-~----------l-t~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 295 -GRSIYFTSDRGGAPQIYRMPASGGAAQ-R----------V-TF-------TGS---YNTSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred -CCEEEEEecCCCCcEEEEEECCCCceE-E----------E-ec-------CCC---CcCceEECCCCCEEEEEEccCCc
Confidence 56665444 45667777654 22110 0 0 00 111 134578999999998777643
Q ss_pred -eEEEEECCCC
Q 004290 302 -HVYLMDVNHA 311 (763)
Q Consensus 302 -~i~iwd~~~~ 311 (763)
.|++||+.++
T Consensus 352 ~~I~v~d~~~g 362 (427)
T PRK02889 352 FKLYVQDLATG 362 (427)
T ss_pred EEEEEEECCCC
Confidence 6888888764
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.23 E-value=3.8e-10 Score=107.51 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=99.4
Q ss_pred EEEEEeeCCCCcEEEEEeC----------CCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEE
Q 004290 97 FCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWS 165 (763)
Q Consensus 97 ~~v~~~p~~~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s 165 (763)
..+.|+|. |++|+.-.. -+...+|.++... .+...+. ...++|.+++|+|++..+++.
T Consensus 9 ~~~~W~~~--G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------~~~~~i~l~~~~~I~~~~WsP~g~~favi 77 (194)
T PF08662_consen 9 AKLHWQPS--GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------IPVESIELKKEGPIHDVAWSPNGNEFAVI 77 (194)
T ss_pred EEEEeccc--CCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------CccceeeccCCCceEEEEECcCCCEEEEE
Confidence 45778888 555444322 1335666664422 1233332 234579999999955443333
Q ss_pred -EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEE
Q 004290 166 -ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFAR 241 (763)
Q Consensus 166 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~ 241 (763)
|..++.|.+||++... +.. . ....++.+.|+|+ |++|++++.+ |.|.
T Consensus 78 ~g~~~~~v~lyd~~~~~---------------i~~-----------~--~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 78 YGSMPAKVTLYDVKGKK---------------IFS-----------F--GTQPRNTISWSPD-GRFLVLAGFGNLNGDLE 128 (194)
T ss_pred EccCCcccEEEcCcccE---------------eEe-----------e--cCCCceEEEECCC-CCEEEEEEccCCCcEEE
Confidence 4467899999996221 111 1 1345688999997 7889888754 6699
Q ss_pred EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCeEEEEECCC
Q 004290 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH 310 (763)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~------d~~i~iwd~~~ 310 (763)
+||.++.+.+.+. .|. .++.++|+|||++|++++. |+.++||+...
T Consensus 129 ~wd~~~~~~i~~~---------------------~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKKKISTF---------------------EHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCEEeecc---------------------ccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 9999976554332 122 3889999999999999875 78999999865
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.6e-10 Score=109.69 Aligned_cols=201 Identities=10% Similarity=0.067 Sum_probs=140.3
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCc
Q 004290 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGT 171 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~ 171 (763)
...+..++|++. -..++++..|-.|++||-... +...++ .....|++|+|-|.....|+.|+. +-
T Consensus 98 ~~dlr~~aWhqH--~~~fava~nddvVriy~ksst-----------~pt~Lks~sQrnvtclawRPlsaselavgCr-~g 163 (445)
T KOG2139|consen 98 EIDLRGVAWHQH--IIAFAVATNDDVVRIYDKSST-----------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AG 163 (445)
T ss_pred hcceeeEeechh--hhhhhhhccCcEEEEeccCCC-----------CCceecchhhcceeEEEeccCCcceeeeeec-ce
Confidence 345788999997 578999999999999998751 122222 234579999999988888888887 55
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCC
Q 004290 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP 250 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~ 250 (763)
|.+|......+...... ........+...++| .+|++++|+++ +..+++++ .|..|+|||..+++.
T Consensus 164 IciW~~s~tln~~r~~~-----------~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIR-----------MMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred eEEEEcCcccccccccc-----------cccccchhheeCCCC-ceeeEEEEcCC-CCEEeecccCcceEEEEcCCCCCc
Confidence 88998776543321110 111112234444555 78999999998 56777776 467899999998764
Q ss_pred CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (763)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 330 (763)
+.-. ..|.. .++-+.|||||.+|++++-|+..++|+................+...+|+
T Consensus 231 ~pL~-------------------~~glg--g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 231 IPLI-------------------PKGLG--GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred cccc-------------------ccCCC--ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 3211 11222 48899999999999999999999999766644444444444477888999
Q ss_pred cCCCCcccCCC
Q 004290 331 PTLNGLELQPP 341 (763)
Q Consensus 331 p~~~~~~~~~~ 341 (763)
|.+.-+-+...
T Consensus 290 pcGsfLLf~~s 300 (445)
T KOG2139|consen 290 PCGSFLLFACS 300 (445)
T ss_pred CCCCEEEEEEc
Confidence 98777655443
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.3e-10 Score=115.15 Aligned_cols=287 Identities=15% Similarity=0.131 Sum_probs=193.0
Q ss_pred CCcccccccccchhhhhccccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCC-CCeEE--EEEccCCCCce
Q 004290 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYS-SRKLL--HSIETGHSANV 96 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~-~~~~~--~~~~~~h~~~V 96 (763)
.+.+-++.+-+|+....+ ....-..||...|....|-| +..-|++++.||+|++=.+. ++.+. ..+ ..|.++|
T Consensus 158 ~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~v 235 (559)
T KOG1334|consen 158 ASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPV 235 (559)
T ss_pred eccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCcc
Confidence 345667888889865544 33344568999999999988 34679999999999998764 33332 333 6799999
Q ss_pred EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---ceeEEEEecCCCCEEEEEeCCCcEE
Q 004290 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLR 173 (763)
Q Consensus 97 ~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~s~s~dg~i~ 173 (763)
..++.-|++ ..-|.+++.|+.+.-+|++..... ..+..-..+.. ..+.++..|.+...|++++.|..++
T Consensus 236 hklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa-------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~R 307 (559)
T KOG1334|consen 236 HKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPA-------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFAR 307 (559)
T ss_pred ceeeecCCC-CCcccccccccceeeeeeccCCcc-------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhh
Confidence 999999997 788999999999999999863221 11222233333 5788999998888999999999999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004290 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (763)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 253 (763)
+||.+.-.........+..|...+.. .....|++++|+.+++ -|+++-.|-.|+++....+.--.
T Consensus 308 vYD~R~~~~e~~n~~~~~f~p~hl~~-------------d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~- 372 (559)
T KOG1334|consen 308 VYDQRRIDKEENNGVLDKFCPHHLVE-------------DDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSE- 372 (559)
T ss_pred hhcccchhhccccchhhhcCCccccc-------------cCcccceeEEecCCcc-ceeeeecccceEEeccccccCCC-
Confidence 99998765332222222222222211 2345789999998754 55566678889999544332100
Q ss_pred cCCCCCCCCcccccccccccCCCCCcc-ceeEEE-EcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 254 CQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVT-FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~v~-~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
+.+..+ ...+.+... .||.+. .|..|- |-|...|+++|+.-|.|.||+-.+++......+..+.++++--+|
T Consensus 373 -p~~~s~---~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 373 -PDPSSP---REQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred -CCCCcc---hhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 000000 011111111 345432 366665 468899999999999999999999776666777777788887777
Q ss_pred CCCCcccC
Q 004290 332 TLNGLELQ 339 (763)
Q Consensus 332 ~~~~~~~~ 339 (763)
-...++..
T Consensus 447 ~~PvLAsS 454 (559)
T KOG1334|consen 447 HLPVLASS 454 (559)
T ss_pred CCchhhcc
Confidence 65555433
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=6e-10 Score=106.11 Aligned_cols=148 Identities=14% Similarity=0.225 Sum_probs=101.7
Q ss_pred EEEeCCCCCEEEEEeC---C-------CcEEEEeCCC-CeEEEEEccCCCCceEEEEEeeCCCCcEEEE--EeCCCcEEE
Q 004290 55 AISWNSKGSLLISGSD---D-------THINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVS--GAGDAEVRL 121 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~---D-------~~v~iWd~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s--~s~dg~I~i 121 (763)
.+.|+|+|++|+.-.. | +...||-+.. +..+..+.....++|.+++|+|+ ++.|+. |..++.|.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 5889999987764322 1 2355555532 23344442344567999999999 566544 446789999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC---CCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
||++. .++..+ +...++.|.|+| .++++++++. .|.|.+||+++.+.+
T Consensus 88 yd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i--------------- 138 (194)
T PF08662_consen 88 YDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKI--------------- 138 (194)
T ss_pred EcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEe---------------
Confidence 99973 334554 356788999999 6688888764 467999999966532
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC------CCcEEEEeCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~------Dg~i~iwd~~ 246 (763)
... ....++.++|+|+ |++|+++.. |+.++||+..
T Consensus 139 ----------~~~--~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 ----------STF--EHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ----------ecc--ccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence 111 1234689999998 788888764 7889999985
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=5.2e-09 Score=100.28 Aligned_cols=184 Identities=20% Similarity=0.291 Sum_probs=131.7
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeC
Q 004290 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
...++-|||...+ +++.+|. -..+|.++.+.++ +|+..-. +.|.||... +.+.++.+.. ...+=--++..|.
T Consensus 73 ~pNkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et-~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 73 PPNKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIET-RSNPKGLCSLCPT 145 (346)
T ss_pred CCceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeec-ccCCCceEeecCC
Confidence 3578889994443 4555655 4678999999864 5666654 689999998 5566666632 1111113445555
Q ss_pred CCCcEEEE-EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-EEEEECCCCCC
Q 004290 105 TSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSS 182 (763)
Q Consensus 105 ~~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-i~iwd~~~~~~ 182 (763)
.+..+||. |-.-|.|+|-|+..... .+-..+.+|...|.||+.+- .|.++||+|..|+ |||||..+++.
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE
Confidence 43455555 34569999999986321 12467789999999999998 6799999999998 89999999874
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
+ ..++.|. ....|.+++|+|+ ..+||++|..|++.||.++...
T Consensus 217 l--------------~E~RRG~---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 217 L--------------QELRRGV---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred e--------------eeeecCC---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence 4 2233322 3467999999997 7899999999999999998643
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.16 E-value=4.8e-11 Score=119.21 Aligned_cols=219 Identities=16% Similarity=0.195 Sum_probs=160.2
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
..|.++.|-.+..++|.+-. ..+.|||- .|..++.+ ..| ..|..+.|.|. --+|++++..|.++.-|+.++.
T Consensus 171 Etv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHCl-k~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~Gk-- 242 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCL-KRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGK-- 242 (545)
T ss_pred hhhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeeh-hhc-Cchhhhcccch--hheeeecccCCceEEEeechhh--
Confidence 45777888778888887754 68999995 56777777 334 57999999999 4788899999999999999853
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
.+..+..-.+.+..|+-+|.+ .++-+|...|+|.+|.....+++ .-
T Consensus 243 --------lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePL-------------------------vK 288 (545)
T KOG1272|consen 243 --------LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL-------------------------VK 288 (545)
T ss_pred --------hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchH-------------------------HH
Confidence 366676778889999999955 67888999999999998776643 22
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004290 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd 290 (763)
...|.++|.+|++.+. |.|+||.+.|..++|||+|+...+.++.. ..+...++||..
T Consensus 289 iLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------------p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------------PHPASNLSLSQK 345 (545)
T ss_pred HHhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec----------------------CCCccccccccc
Confidence 2347889999999997 89999999999999999998754433211 114677888876
Q ss_pred CCEEEEEeCCCeEEEEECCCC---Cc--cceEeecCCCCeeeeeccCCCCc
Q 004290 291 GEEVLLSYSGEHVYLMDVNHA---GG--RAMRYTVGDASKIMSFTPTLNGL 336 (763)
Q Consensus 291 g~~l~~~s~d~~i~iwd~~~~---~~--~~~~~~~~~~~~~~~~~p~~~~~ 336 (763)
| +++.+....|.||.=... .. +......+..+..+.|.|.-..+
T Consensus 346 g--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvL 394 (545)
T KOG1272|consen 346 G--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVL 394 (545)
T ss_pred c--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHee
Confidence 5 556666678999943221 11 22222224566777787754433
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=5.3e-09 Score=114.19 Aligned_cols=203 Identities=13% Similarity=0.089 Sum_probs=128.1
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCC
Q 004290 42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA 117 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg 117 (763)
..+.+..+...+.+.+|+|||++||.++.+ ..|++||+.+++.... ..+.+.+.+++|+|+ ++.|+ +.+.++
T Consensus 181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spD--g~~l~~~~~~~~ 256 (417)
T TIGR02800 181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPD--GSKLAVSLSKDG 256 (417)
T ss_pred CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCC--CCEEEEEECCCC
Confidence 345566677789999999999999987653 4799999998865433 245566778999999 56554 555544
Q ss_pred --cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCcc
Q 004290 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQE 192 (763)
Q Consensus 118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~ 192 (763)
.|++||+.++. ...+..+........|+|++ ..|+.++ .++ .|+++|+.+++..
T Consensus 257 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~--------- 315 (417)
T TIGR02800 257 NPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR--------- 315 (417)
T ss_pred CccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE---------
Confidence 58888887532 23333444455677899954 5554443 344 4777777654310
Q ss_pred cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
.+. .+...+....|+|+ +++|+.++.++ .|.+||+.++... .+
T Consensus 316 --------------~l~---~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l--------------- 361 (417)
T TIGR02800 316 --------------RLT---FRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-VL--------------- 361 (417)
T ss_pred --------------Eee---cCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-Ec---------------
Confidence 010 01223456789997 67787777765 7888888764311 00
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCC---eEEEEECCC
Q 004290 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNH 310 (763)
Q Consensus 270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~---~i~iwd~~~ 310 (763)
...+ ......|+|||++|+..+.++ .+++.+...
T Consensus 362 ---~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 362 ---TDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred ---cCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 0000 133457999999998887743 455555443
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=1.6e-09 Score=119.22 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred eeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCCeEEEEeCCCcEEEEcC
Q 004290 620 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698 (763)
Q Consensus 620 ~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~~laS~s~D~~IrvW~~ 698 (763)
-||...+..+. |.|+ +|+|++.|.+.++|+.. ++.+.++.+| .+.++.++.++....++|+|.|+.+|+|++
T Consensus 215 fgHsaRvw~~~----~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 215 FGHSARVWACC----FLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccceeEEEE----eccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 36777665443 7887 99999999999999665 6666799999 568999999999999999999999999998
Q ss_pred CCCC
Q 004290 699 SASV 702 (763)
Q Consensus 699 ~~~~ 702 (763)
...-
T Consensus 288 ~~r~ 291 (967)
T KOG0974|consen 288 NGRG 291 (967)
T ss_pred hccc
Confidence 7654
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=8.4e-10 Score=113.27 Aligned_cols=195 Identities=15% Similarity=0.206 Sum_probs=142.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
...+++.| ....|.-++++.|+.+..+ ....+.+++|..++. ..+|++|+.+|.|.+||.+..+.... ....
T Consensus 145 scDly~~g-sg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~----l~~~ 216 (703)
T KOG2321|consen 145 SCDLYLVG-SGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT----LDAA 216 (703)
T ss_pred CccEEEee-cCcceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee----eecc
Confidence 34444444 4457888999999998888 566689999999998 57999999999999999997542211 1111
Q ss_pred eeeecccC-----ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290 141 ALYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (763)
Q Consensus 141 ~~~~~h~~-----~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (763)
.....|.+ .|+++.|+. ++-.+++|..+|.|.|||+|..++.. .-..+..
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~------------------------~kdh~~e 271 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLL------------------------VKDHGYE 271 (703)
T ss_pred cccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCcee------------------------ecccCCc
Confidence 22223433 499999986 57899999999999999999987541 1112345
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~ 295 (763)
.+|..+.|.+.+..--++......++|||-.+++....+. ....++.+|+-|++.+++
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCFVPGSGMFF 329 (703)
T ss_pred cceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------------------ccCCcCceeeecCCceEE
Confidence 6788999987644445555667889999999988664432 111489999999999999
Q ss_pred EEeCCCeEEEEECCC
Q 004290 296 LSYSGEHVYLMDVNH 310 (763)
Q Consensus 296 ~~s~d~~i~iwd~~~ 310 (763)
++-.+..+..|=+..
T Consensus 330 ~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 330 TANESSKMHTYYIPS 344 (703)
T ss_pred EecCCCcceeEEccc
Confidence 998888777765555
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.14 E-value=8e-09 Score=108.56 Aligned_cols=187 Identities=12% Similarity=0.164 Sum_probs=120.1
Q ss_pred ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
+-...+.+-+ ..+.+.+.++......-..+.|+|||+++.+++.|+.|.++|+.+++.+.++..+ ....+++++++
T Consensus 13 ~~~~~v~viD--~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~D 88 (369)
T PF02239_consen 13 RGSGSVAVID--GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPD 88 (369)
T ss_dssp GGGTEEEEEE--TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--T
T ss_pred cCCCEEEEEE--CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCC
Confidence 3345555555 5566778888765444456889999999999999999999999999999998433 45788999999
Q ss_pred CCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeec-------ccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290 105 TSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (763)
Q Consensus 105 ~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd 176 (763)
|++++++. ..+.+.++|.++. ++++.+.. ...++..|..+|..+.++++.-+-+.|.+.|
T Consensus 89 --G~~~~v~n~~~~~v~v~D~~tl----------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 89 --GKYVYVANYEPGTVSVIDAETL----------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp --TTEEEEEEEETTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred --CCEEEEEecCCCceeEeccccc----------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 78877665 6899999999873 33444432 2346778878885555665555568888888
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEeCCCCCCCc
Q 004290 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd~~~~~~~~ 252 (763)
....+.. ...... .........|+|+ ++++++ ...++.|-++|..+++.+.
T Consensus 157 y~d~~~~----------~~~~i~--------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 157 YSDPKNL----------KVTTIK--------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp TTTSSCE----------EEEEEE----------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ecccccc----------ceeeec--------------ccccccccccCcc-cceeeecccccceeEEEeeccceEEE
Confidence 7765421 000110 1224567889997 566555 4567789999998876543
No 239
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=3.7e-10 Score=118.85 Aligned_cols=208 Identities=15% Similarity=0.192 Sum_probs=143.3
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
.+++..+..+|.|+-+|.++.-| +.+-|+... ...+-+..--.-.|-.+.|+|.....+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46789999999999999988765 456676643 2222221112345778889987544555555556667799998755
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
.+. ....+-+|...|+.+.|+|+.+..+++++.|-.+..||+++.....
T Consensus 103 ~~a-------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~------------------------ 151 (1081)
T KOG0309|consen 103 SNA-------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF------------------------ 151 (1081)
T ss_pred ccc-------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce------------------------
Confidence 433 2456778999999999999999999999999999999999876331
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC-cccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
.....-......++|+-.+++.+| .+..+.|++||.+.+... ..+ .+|-. .|+.+.|
T Consensus 152 ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~--------------------K~~vs-~vn~~~f 209 (1081)
T KOG0309|consen 152 YSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSL--------------------KGHVS-SVNSIDF 209 (1081)
T ss_pred eeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEe--------------------cccce-eeehHHH
Confidence 111111223456788877665554 456778999999987522 111 22333 3777777
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCC
Q 004290 288 SP-NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 288 sp-dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.. ....+.+.+.|++|++||....
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhhhhhhhcccCCCCceeeeccccc
Confidence 64 3345888999999999998774
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=2.4e-09 Score=117.77 Aligned_cols=196 Identities=11% Similarity=0.135 Sum_probs=149.4
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE---EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF---CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 56 l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~---~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
..+.-+.+.++.+..+..+-+||...+.....+......... -+-++++ .-++++|+.-+.|.+|+....+
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn---- 166 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDN---- 166 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccC----
Confidence 344445678888888999999999988777666221111111 2333455 4689999999999999998311
Q ss_pred CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004290 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (763)
.+. .+.+|.+.|.++.|+- ++.+++++|+|.++++|++.+.+... ...-
T Consensus 167 -----~p~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~f 215 (967)
T KOG0974|consen 167 -----KPI-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTGF 215 (967)
T ss_pred -----Ccc-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------cccc
Confidence 222 5789999999999998 77999999999999999999987431 1223
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC
Q 004290 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (763)
Q Consensus 213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~ 292 (763)
+|...|..++|.|. .+++++.|.+.++|+..-. .+.. + .+|....|..++..++..
T Consensus 216 gHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~-~l~~-------------y-------~~h~g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 216 GHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT-QLEV-------------Y-------DEHSGKGIWKIAVPIGVI 271 (967)
T ss_pred cccceeEEEEeccc---eeEEeccceEEEEEecccc-eehh-------------h-------hhhhhcceeEEEEcCCce
Confidence 68889999999994 8999999999999965432 1111 1 446666799999999999
Q ss_pred EEEEEeCCCeEEEEECCCCC
Q 004290 293 EVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 293 ~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+++++.|+.+++|++....
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEeeccCcchhhhhhhccc
Confidence 99999999999999998743
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2.6e-08 Score=102.69 Aligned_cols=220 Identities=12% Similarity=0.189 Sum_probs=127.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-----eC-----CCcEE
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-----AG-----DAEVR 120 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-----s~-----dg~I~ 120 (763)
..++..+++++|+++|.+.. ..|+|++..++..+.+.. . ..++++.|+|. +.+|.+= -. .-.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~-~--~~~~~L~fSP~--g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE-L--KKTYDLLFSPK--GNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec-c--ceeeeeeeccc--ccccccccccccccCCCCCCCcee
Confidence 34788999999998887654 689999999886555442 2 27899999999 6777762 11 23467
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
+|++.+.-. ...+..-...-.+..|++++ .+. .--..+.+++|++...+.+
T Consensus 109 v~~vet~~~----------~s~~q~k~Q~~W~~qfs~dE-sl~-arlv~nev~f~~~~~f~~~----------------- 159 (566)
T KOG2315|consen 109 VYNVETGVQ----------RSQIQKKMQNGWVPQFSIDE-SLA-ARLVSNEVQFYDLGSFKTI----------------- 159 (566)
T ss_pred eeeecccee----------hhheehhhhcCcccccccch-hhh-hhhhcceEEEEecCCccce-----------------
Confidence 999887211 11121111122578888844 332 2233468999998775422
Q ss_pred CCCceeeccCCCCCccceEEEEEeCC-CCcEEEE-----EeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290 201 RCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~~l~s-----gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
...-+...|+.+.++|. .+..+|+ ++.-..||||.......-..+ . .+.|
T Consensus 160 ---------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-------a-~ksF------- 215 (566)
T KOG2315|consen 160 ---------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-------A-NKSF------- 215 (566)
T ss_pred ---------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------h-hccc-------
Confidence 01113456778888885 2334443 345577999987632211110 0 1111
Q ss_pred CCCCccceeEEEEcCCCCEEE--EEeC-C---------CeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290 275 HGRSSLHLTHVTFSPNGEEVL--LSYS-G---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg~~l~--~~s~-d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
... .=-.+.|.+-|.-|+ +.+. | .++++.+++ +..........+++-.+.|+|.+
T Consensus 216 --Fka-dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 216 --FKA-DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSG 282 (566)
T ss_pred --ccc-ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCC
Confidence 001 123356766554322 2222 3 478888888 34444555556778888888854
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.1e-08 Score=111.78 Aligned_cols=203 Identities=15% Similarity=0.160 Sum_probs=130.4
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
..|.+||..... ...+ ..|...+.+.+|+|+ |+.|+..+. +..|.+||+.++. ...+..+.+
T Consensus 182 ~~l~~~d~dg~~-~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG 246 (435)
T ss_pred eEEEEECCCCCC-cEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence 478899986543 3445 467789999999999 788877664 4679999998643 233445666
Q ss_pred ceeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
.+...+|+|++..++++.+.++. |++||+.+++.. .+. .+........|+|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt---~~~~~~~~~~~spD 300 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLT---DSPAIDTSPSYSPD 300 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ecc---CCCCccCceeEcCC
Confidence 77889999966556667777665 777788765421 111 11223456799998
Q ss_pred CCcEEEEEeC-CC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---
Q 004290 227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (763)
Q Consensus 227 ~~~~l~sgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--- 300 (763)
++.|+..+. ++ .|.+||+..+.... + . . .. ..+....|+|||++|+....+
T Consensus 301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l-------------t------~-~~-~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 301 -GSQIVFESDRSGSPQLYVMNADGSNPRR-I-------------S------F-GG-GRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred -CCEEEEEECCCCCCeEEEEECCCCCeEE-e-------------e------c-CC-CcccCeEECCCCCEEEEEEcCCCc
Confidence 566666553 33 57777876543210 0 0 0 11 135668899999999887653
Q ss_pred CeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCC
Q 004290 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (763)
Q Consensus 301 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (763)
..|.+||+.++... ....+.......|+|+.+.+.+..
T Consensus 358 ~~i~~~d~~~~~~~--~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 358 FSIGVMKPDGSGER--ILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred eEEEEEECCCCceE--eccCCCCCCCCeECCCCCEEEEEE
Confidence 37888998664322 222233456678888877665543
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=7.3e-09 Score=100.07 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=117.2
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc------------cCceeEEEEecCC
Q 004290 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH------------TRRVKKLAVEVGN 159 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~sp~~ 159 (763)
...-|.++.|... |.+|++|..+|.|.++.-....... ......+..| ...|..+.|.++.
T Consensus 24 eadiis~vef~~~--Ge~LatGdkgGRVv~f~r~~~~~~e-----y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 24 EADIISAVEFDHY--GERLATGDKGGRVVLFEREKLYKGE-----YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hhcceeeEEeecc--cceEeecCCCCeEEEeecccccccc-----eeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 3456889999998 8999999999999999766432100 1122333333 3468889998743
Q ss_pred -CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc----ccce---E-EE---ecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290 160 -PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ----ECRN---I-LL---DLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 160 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~~---~-~~---~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
...|+..+.|++|++|-++............. .... . +. ++.......-.....|..-|++|.++.+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD- 175 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD- 175 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-
Confidence 34666778899999999876543220000000 0000 0 00 0000001111233568889999999997
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCeEEEE
Q 004290 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLM 306 (763)
Q Consensus 228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iw 306 (763)
...+++ ..|=.|.+|.+.--..-..+. -..|..... . ..-|++..|+|. ...++-++..|+|++-
T Consensus 176 ~Et~lS-ADdLRINLWnlei~d~sFnIV----------DIKP~nmEe--L-teVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 176 KETFLS-ADDLRINLWNLEIIDQSFNIV----------DIKPANMEE--L-TEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceEee-ccceeeeeccccccCCceeEE----------EccccCHHH--H-HHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 445554 567889999987432111110 000111000 1 115899999995 4567778889999999
Q ss_pred ECCC
Q 004290 307 DVNH 310 (763)
Q Consensus 307 d~~~ 310 (763)
|++.
T Consensus 242 DmR~ 245 (433)
T KOG1354|consen 242 DMRQ 245 (433)
T ss_pred echh
Confidence 9987
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.08 E-value=2.4e-09 Score=102.65 Aligned_cols=268 Identities=15% Similarity=0.173 Sum_probs=160.2
Q ss_pred CceEEEEeCCCCCEEEE-EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 51 GCVNAISWNSKGSLLIS-GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Las-gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
+.|.-+.|..|..+++. ...|+.|.+|++...+--.++ ......+.+++|+|++ ..+|.+...+-.|.+|.+.+.++
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCc-ceEeeeecceeEEEEEEecccee
Confidence 56778899988776554 567889999999999888888 5667789999999994 47788888899999999997443
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CC-------------cEEEEECCCCCCCCCCCCCCcccce
Q 004290 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DG-------------TLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg-------------~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
. -++--+..+..++|+| ++++.+.++. |. .++-+++.+-........ ...+..
T Consensus 127 ~-----------~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~l 193 (447)
T KOG4497|consen 127 Y-----------LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWL 193 (447)
T ss_pred E-----------EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEE
Confidence 2 1222233456777877 5566554443 11 112233332221111111 111222
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC----------------
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------- 259 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~---------------- 259 (763)
.+|+.--..... .-.....+..++|+|. ++.|++|+.|+.+||.+--+.+.+..+...-.
T Consensus 194 aVwd~~Leykv~---aYe~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 194 AVWDNVLEYKVY---AYERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred EEecchhhheee---eeeeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence 222211000000 0011246889999997 68999999999999877665554433321000
Q ss_pred ---CCCcc----------------------------cccccccccCCCCCccceeEEEEcCCCCEEEEEeC--CCeEEEE
Q 004290 260 ---PPPCV----------------------------NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLM 306 (763)
Q Consensus 260 ---~~~~~----------------------------~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~--d~~i~iw 306 (763)
.-.|+ ....|..-.+ .....+..++|++|..|+++-.+ -+.+-+|
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W 347 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLW 347 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC--CcccccceeeecCCceEEeeecCCCCceEEEE
Confidence 00011 1111111111 11224788999999999888765 4689999
Q ss_pred ECCCCCccceEeecCCCCeeeeeccCCCCcccCC
Q 004290 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (763)
Q Consensus 307 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 340 (763)
|++.. +.....-..++++..-|.|.-..+....
T Consensus 348 dlq~l-~l~avLiQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 348 DLQNL-KLHAVLIQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred echhh-hhhhhhhhccceeEEEeCCCCceEEEEc
Confidence 99984 3444444567778888888655554433
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.4e-08 Score=110.49 Aligned_cols=221 Identities=11% Similarity=0.081 Sum_probs=126.2
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCCc--
Q 004290 45 ELEGHQGCVNAISWNSKGSLLISGSDD-T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE-- 118 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D-~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg~-- 118 (763)
.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++..... ...+......|+|+ ++.|+ +.+.++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPD--G~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPD--GKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence 344455678899999999999876543 2 5888999887653322 22333457899999 56555 5566775
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceE
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
|.++|+..+. ...+..+.......+|+|++..++++...++. |+++|+.+++..
T Consensus 288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~------------- 343 (448)
T PRK04792 288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS------------- 343 (448)
T ss_pred EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------------
Confidence 6677776532 33344455566778999965445555544444 555666654311
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCc--EEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
.+.. .+ ......+|+|+ +++|+..+ .++. |.++|+.+++.. .+ ..
T Consensus 344 ----------~Lt~-~g--~~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~l-------------t~---- 391 (448)
T PRK04792 344 ----------RLTF-EG--EQNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-VL-------------TS---- 391 (448)
T ss_pred ----------EEec-CC--CCCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeE-Ec-------------cC----
Confidence 1110 01 11234689998 45665544 3444 455677665321 00 00
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCccceEeecCCCCeeeeecc
Q 004290 274 EHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
. . ......|+|||++|+..+. ++ .+++++... ................+|+|
T Consensus 392 -~-~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 392 -T-R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -C-C---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence 0 0 0123469999999887765 33 477778754 33332222333445566666
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.8e-08 Score=110.15 Aligned_cols=224 Identities=13% Similarity=0.079 Sum_probs=133.5
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE-EEeCCC-
Q 004290 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA- 117 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~-s~s~dg- 117 (763)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... + ....+.+....|+|+ |+.|+ +.+.++
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence 34555677889999999999999876643 368999999886543 2 233345567899999 66665 555555
Q ss_pred -cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccc
Q 004290 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 118 -~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.|.+||+.++. ...+..+........|+|++..++++...+| .|+++|+.+++..
T Consensus 267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------- 324 (430)
T PRK00178 267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------- 324 (430)
T ss_pred ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 57888887632 2334445555667899996544555544444 4666777655411
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CC--cEEEEeCCCCCCCcccCCCCCCCCccccccccc
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (763)
.+.. .+ .......|+|+ ++.|+..+. ++ .|.+||+.+++... + .
T Consensus 325 ------------~lt~-~~--~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~~-l-------------t--- 371 (430)
T PRK00178 325 ------------RVTF-VG--NYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVRI-L-------------T--- 371 (430)
T ss_pred ------------Eeec-CC--CCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEEE-c-------------c---
Confidence 0000 00 11234679997 566665554 33 47888988754210 0 0
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 272 ~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
.+. ......|+|||++|+.++.+ ..|+++++.... ..............+|+|.
T Consensus 372 ---~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 372 ---DTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ---CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCCCCCcCCCccCCC
Confidence 000 11235799999999887753 357777775532 2122222333455556653
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=1.5e-08 Score=96.10 Aligned_cols=187 Identities=14% Similarity=0.235 Sum_probs=136.2
Q ss_pred ccCceEEEEeCC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCC------CceEEEEEeeCCCCcEEEEEeCCCc
Q 004290 49 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETGHS------ANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 49 H~~~V~~l~fsp---~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~------~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
.+..+..+.|+- +|. .|+-+-.+|.|.++..........+ .+-. ....++.|++. +..++++-.+|.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~ 144 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDISTS--GTKIFVSDSRGS 144 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeecc--CceEEEEcCCCc
Confidence 345677888864 555 5667778899999987655444333 2211 12457888888 688999988999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
+.+-+..... .+..+..+.|.-++....|+..+++++++||.|+.+..||+|.++. .+|
T Consensus 145 ~~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-------------~i~ 203 (339)
T KOG0280|consen 145 ISGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-------------FIW 203 (339)
T ss_pred EEEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-------------eee
Confidence 9866655422 2345678899999999999988899999999999999999995441 111
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
.....|...|.+|.-+|..+.++++|+.|..|++||.| +++++... .
T Consensus 204 ----------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------------------~ 251 (339)
T KOG0280|consen 204 ----------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------------------K 251 (339)
T ss_pred ----------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------------------c
Confidence 12335778899999998889999999999999999999 44444221 1
Q ss_pred CccceeEEEEcCCC
Q 004290 278 SSLHLTHVTFSPNG 291 (763)
Q Consensus 278 ~~~~i~~v~~spdg 291 (763)
-.+.|+.+.++|.-
T Consensus 252 v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEI 265 (339)
T ss_pred cccceEEEEecchh
Confidence 12359999999853
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=9e-09 Score=97.56 Aligned_cols=161 Identities=16% Similarity=0.086 Sum_probs=118.9
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
..++.|++.+..++++-.+|.+.+-+....... +.. +.|..+++-++|+... .+++.+|+.|+.+..||++.+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcc-
Confidence 347788898999999999999986554443322 244 7899999999999875 68999999999999999995431
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004290 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
. ..+..+-|...|.+|.-+|..+.+++||+.|-.|++||.|....+...
T Consensus 201 ~-------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~------------------------ 249 (339)
T KOG0280|consen 201 F-------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK------------------------ 249 (339)
T ss_pred e-------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc------------------------
Confidence 1 123356789999999999988899999999999999999965433111
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
. ...+.|..+.++|.....++.++.-+-.+|-+....
T Consensus 250 ~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 250 A-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred C-ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 0 123678888888865445555555556667666643
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.00 E-value=7.1e-07 Score=94.06 Aligned_cols=231 Identities=10% Similarity=0.101 Sum_probs=134.1
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeC----CCcEEEEeCCCC--e--EEEEEccCCCCceEEEEEeeCCCCcE
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDEL 109 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~----D~~v~iWd~~~~--~--~~~~~~~~h~~~V~~v~~~p~~~~~~ 109 (763)
.++..+..+. -......|+++|++++|.+... ++.|..|.+... + .+... .........++++|+ +++
T Consensus 25 g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~ 100 (345)
T PF10282_consen 25 GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRF 100 (345)
T ss_dssp TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSE
T ss_pred CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCE
Confidence 4444444433 2344567899999999988876 578999988753 3 33333 223455678999999 688
Q ss_pred EEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeee----------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290 110 VVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 110 l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
|+++.. +|.|.++++... +... .....+. .-....+++.|+|++..++++.-....|.+|++.
T Consensus 101 l~vany~~g~v~v~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 101 LYVANYGGGSVSVFPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp EEEEETTTTEEEEEEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred EEEEEccCCeEEEEEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 888774 899999999863 2110 1111111 1234578899999554444444445689999987
Q ss_pred CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCC
Q 004290 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKR 257 (763)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~ 257 (763)
...... . ......+ ........++|+|++...+++.-.++.|.+|++.... .+..
T Consensus 175 ~~~~~l-------~-~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~---- 230 (345)
T PF10282_consen 175 DDTGKL-------T-PVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE---- 230 (345)
T ss_dssp TTS-TE-------E-EEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE----
T ss_pred CCCceE-------E-Eeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE----
Confidence 764110 0 0000011 1223467899999854444555677889999988221 1110
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~ 310 (763)
+...........+.. ....|+++|||++|+++.. .+.|.+|+++.
T Consensus 231 ------~~~~~~~~~~~~~~~--~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 231 ------IQTISTLPEGFTGEN--APAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp ------EEEEESCETTSCSSS--SEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred ------EEEeeeccccccccC--CceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 011000000011111 4788999999999998876 78999999854
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.1e-07 Score=103.75 Aligned_cols=174 Identities=7% Similarity=0.044 Sum_probs=100.6
Q ss_pred cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC--cEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (763)
Q Consensus 73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (763)
.|.++|...... +.+ ..+...+.+..|+|+ |+.|+..+. ++ .|.+||+..+.. ..+....+.
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~-----------~~lt~~~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR-----------EKVTSFPGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe-----------EEecCCCCC
Confidence 577778765443 334 356678899999999 677776654 33 588888876321 112222333
Q ss_pred eeEEEEecCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290 150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
....+|+|++..++++.+.+|. |+++|+.+++.. .+. .+.......+|+|+
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt---~~~~~~~~p~wSpD- 316 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RIT---RHRAIDTEPSWHPD- 316 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC-
Confidence 4568999966556566677775 777787765411 111 11223456789998
Q ss_pred CcEEEEEe-CCCc--EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC--
Q 004290 228 PHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE-- 301 (763)
Q Consensus 228 ~~~l~sgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~-- 301 (763)
++.|+..+ .++. |.++|+.+++... + ...+. .....+|+|||++|+..+. ++
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L------------------t~~g~---~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGKVSR-L------------------TFEGE---QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEE-E------------------ecCCC---CCcCeeECCCCCEEEEEEecCCce
Confidence 45555444 3444 5566666553210 0 00111 1334689999999887665 33
Q ss_pred eEEEEECCC
Q 004290 302 HVYLMDVNH 310 (763)
Q Consensus 302 ~i~iwd~~~ 310 (763)
.|.++|+.+
T Consensus 375 ~I~~~dl~~ 383 (448)
T PRK04792 375 NIARQDLET 383 (448)
T ss_pred EEEEEECCC
Confidence 344455544
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=1.4e-06 Score=91.85 Aligned_cols=208 Identities=14% Similarity=0.139 Sum_probs=119.9
Q ss_pred EEEEeCC----CcEEEEeC--CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC----CCcEEEEECCCCCCCCCCC
Q 004290 65 LISGSDD----THINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 65 Lasgs~D----~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~ 134 (763)
++.|+.. +.|.+|++ ++++....-..........++++|+ +++|.++.. ++.|..|++....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~---- 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGT---- 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTE----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcce----
Confidence 4556655 68888887 4554332211123455677899998 688888876 578999998863221
Q ss_pred CCCCCceeeecccCceeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (763)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (763)
...+............++++|++ .+++++ ..+|.|.++++.....+. ....++... +. .......
T Consensus 76 --L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~--------~~~~~~~~~-g~--g~~~~rq 141 (345)
T PF10282_consen 76 --LTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLG--------EVVQTVRHE-GS--GPNPDRQ 141 (345)
T ss_dssp --EEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEE--------EEEEEEESE-EE--ESSTTTT
T ss_pred --eEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccc--------eeeeecccC-CC--CCccccc
Confidence 12344444344566789999955 555555 468999999998742110 000011000 00 0000112
Q ss_pred CccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290 214 QTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
......++.|+|+ ++++++.. ....|++|++..... +... .. +. -..+..-..++|+|++
T Consensus 142 ~~~h~H~v~~~pd-g~~v~v~dlG~D~v~~~~~~~~~~~l~~~----------~~-----~~--~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 142 EGPHPHQVVFSPD-GRFVYVPDLGADRVYVYDIDDDTGKLTPV----------DS-----IK--VPPGSGPRHLAFSPDG 203 (345)
T ss_dssp SSTCEEEEEE-TT-SSEEEEEETTTTEEEEEEE-TTS-TEEEE----------EE-----EE--CSTTSSEEEEEE-TTS
T ss_pred ccccceeEEECCC-CCEEEEEecCCCEEEEEEEeCCCceEEEe----------ec-----cc--cccCCCCcEEEEcCCc
Confidence 2345678999998 56666554 456899999976541 1100 00 00 0112247789999999
Q ss_pred CEEEEEeC-CCeEEEEECCC
Q 004290 292 EEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 292 ~~l~~~s~-d~~i~iwd~~~ 310 (763)
+++++... ++.|.+|++..
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp SEEEEEETTTTEEEEEEEET
T ss_pred CEEEEecCCCCcEEEEeecc
Confidence 99988776 88999998884
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=1.8e-08 Score=97.47 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=134.7
Q ss_pred cccccccccchhhh--hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC----CCeEEEEEccCCCCceE
Q 004290 24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS----SRKLLHSIETGHSANVF 97 (763)
Q Consensus 24 ~~~~~~~~~~~~~~--~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~----~~~~~~~~~~~h~~~V~ 97 (763)
.+.++.+++|...- +.+.-++ ..-..+++++++.++...|+.|-.+|++.-+.+. ....++.. ..|...|.
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~ 118 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVS 118 (404)
T ss_pred ccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhccee
Confidence 34566666665221 1122222 1235689999999999999999999999988654 33344444 68999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC-------------------------------CCCCCCCCceeeecc
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------------------LDDNAITPSALYQCH 146 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~~~h 146 (763)
.+-|+-. ...+++.+.|..+.---.+.+.+.. ...+...++..+.+|
T Consensus 119 ~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 119 AIVFSLT--HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eEEecCC--ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 9999877 4788888888766433222211100 012233556778899
Q ss_pred cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 147 ~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
.+.+++++|.| ...++.+|..|..|.+||+-..+-. .....+|...|..+..-+.
T Consensus 197 ~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~------------------------~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 197 TGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGT------------------------AYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccceEEEEEcC-CCcEEEeccccCceEEEeccCCcce------------------------eeeeccchhhhhhhhhhhh
Confidence 99999999999 6688889999999999999766522 2233345566666666664
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCC
Q 004290 227 RPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 227 ~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
-..+.+++.||.|.+|++....
T Consensus 252 -t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 252 -TRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -heeeeeccCCCeEEEEecccee
Confidence 5789999999999999987543
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.99 E-value=2.8e-07 Score=93.98 Aligned_cols=223 Identities=14% Similarity=0.167 Sum_probs=136.3
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC-----------
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA----------- 117 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg----------- 117 (763)
-.-++..++|||.|.+|++... ..|.+|+-.....+..+ .| ..|..+.|+|. +.+|++=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence 4567899999999999998766 46899998877766665 24 46899999999 79999876544
Q ss_pred ----cEEEEECCCCCCCCCCCCCCCCceeeecccCc--ee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004290 118 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (763)
Q Consensus 118 ----~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 190 (763)
.+.+||...+ ..+..+.....+ .. -+.|+.++ .+++-. ....++|+++ +......
T Consensus 105 ~~~n~~~vwd~~sg----------~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~----- 166 (561)
T COG5354 105 TSKNNVFVWDIASG----------MIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEH----- 166 (561)
T ss_pred cccCceeEEeccCc----------eeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccC-----
Confidence 3899999863 224555544444 44 56788744 555443 3357899997 3321100
Q ss_pred cccceEEEecCCCceeeccCCCCCccceEEEEEeCC-CCcEEEE-----EeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004290 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (763)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~~l~s-----gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (763)
-+ ..-....|....|+|. ++..||. .+.++.++||.+.....+.+.
T Consensus 167 -----p~-------------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk---------- 218 (561)
T COG5354 167 -----PF-------------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK---------- 218 (561)
T ss_pred -----ch-------------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----------
Confidence 00 0001234666677775 2223332 457788999988755433211
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004290 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
. +. ...=..+.|.+.|.+|+.-.. ...++|+++.... .........++-.++|.|.+
T Consensus 219 -~-----lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 219 -N-----LF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred -e-----eE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccC
Confidence 0 00 001234678888887765321 3568888887532 22222445666777777764
Q ss_pred CC
Q 004290 334 NG 335 (763)
Q Consensus 334 ~~ 335 (763)
..
T Consensus 287 ~~ 288 (561)
T COG5354 287 SR 288 (561)
T ss_pred Cc
Confidence 43
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2.3e-07 Score=101.41 Aligned_cols=175 Identities=10% Similarity=0.075 Sum_probs=105.2
Q ss_pred cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004290 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (763)
Q Consensus 73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (763)
.|.++|.+.+.. ..+ ..+...+....|+|+ |+.|+..+.+ ..|.+||+.++.. ..+....+.
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL 244 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence 478888875543 344 356778999999999 6888776543 3588999986431 222223344
Q ss_pred eeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
+....|+|++..++++...+| .|++||+.+++.. .+.. +........|+|+
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spD- 297 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKD- 297 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCC-
Confidence 557899996544555666665 5788888776421 1110 1122345689998
Q ss_pred CcEEEEEe-CCC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-C--
Q 004290 228 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E-- 301 (763)
Q Consensus 228 ~~~l~sgs-~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-~-- 301 (763)
++.|+..+ .++ .|.++|+.+++... + . + .+. ......|+|||++|+..+.+ +
T Consensus 298 g~~i~f~s~~~g~~~iy~~d~~~g~~~~-l----------t-~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 298 GRTLYFTSDRGGKPQIYKVNVNGGRAER-V----------T-F-------VGN---YNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEE-e----------e-c-------CCC---CccceEECCCCCEEEEEEccCCce
Confidence 45554444 444 46666776554210 0 0 0 111 13456899999999877653 3
Q ss_pred eEEEEECCCC
Q 004290 302 HVYLMDVNHA 311 (763)
Q Consensus 302 ~i~iwd~~~~ 311 (763)
.|++||+.++
T Consensus 356 ~l~~~dl~tg 365 (430)
T PRK00178 356 HVAAQDLQRG 365 (430)
T ss_pred EEEEEECCCC
Confidence 4677777663
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-08 Score=96.87 Aligned_cols=239 Identities=15% Similarity=0.217 Sum_probs=151.8
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEE----EEccCCC------------CceEEEEEeeCCCCcEEE
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLH----SIETGHS------------ANVFCTKFVPETSDELVV 111 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~----~~~~~h~------------~~V~~v~~~p~~~~~~l~ 111 (763)
..+-|+++.|...|.+|++|...|.|.++.-+... |-. .| ++|. ..|..+.|..+++...++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35679999999999999999999999999865432 222 23 4443 468889998776455677
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCC--------------------------------CCCCceee-ecccCceeEEEEecC
Q 004290 112 SGAGDAEVRLFNLSRFSGRGLDDN--------------------------------AITPSALY-QCHTRRVKKLAVEVG 158 (763)
Q Consensus 112 s~s~dg~I~iwd~~~~~~~~~~~~--------------------------------~~~~~~~~-~~h~~~v~~l~~sp~ 158 (763)
..+.|++|++|.+....-.....+ ...+.+.. ..|.-.|+++.|+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 777899999999986421110000 00111222 45777889999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004290 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (763)
Q Consensus 159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg 238 (763)
+...+++ +.|=.|.+|++.....+ ..+.+.++.... .-+..|++..|+|..-+.|.-.++.|
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~s-----------FnIVDiKP~nme------eLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGS-----------FNIVDIKPHNME------ELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred chheeee-ccceeeeeccccccCCc-----------eEEEeccCccHH------HHHHHHhhcccCHhHcceEEEecCCC
Confidence 4455545 46788999998765422 233443332211 12456889999998778888899999
Q ss_pred cEEEEeCCCCCCCcc---cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccc
Q 004290 239 FARLYDRRMLPPLTS---CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (763)
Q Consensus 239 ~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~ 315 (763)
.|++-|+|....... +......+-.+..| .+... .|..+.|+++|+++++-. --+|+|||++..+.+.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff-------~eivs-SISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pi 315 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFF-------EEIVS-SISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPI 315 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhH-------HHHhh-hhcceEEcCCCcEEEEec-cceEEEEecccccCCc
Confidence 999999994331100 00000000000000 11111 488999999999877543 4589999999866443
Q ss_pred e
Q 004290 316 M 316 (763)
Q Consensus 316 ~ 316 (763)
.
T Consensus 316 k 316 (460)
T COG5170 316 K 316 (460)
T ss_pred e
Confidence 3
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.5e-09 Score=108.95 Aligned_cols=213 Identities=18% Similarity=0.236 Sum_probs=142.1
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-------~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
+..+.||+..|+.++--.+.+-+++++.|++|++|.++. ..+..++ +.|+.+|.++.|..+ .+.++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--
Confidence 346789999999998888888999999999999999863 2356666 799999999999988 5677765
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE-EEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV-VWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
||.|++||.-.+. .+.... -..-.+..+.|.|+.- - +..+ ++-++...+|+++|.|..+-. |
T Consensus 803 D~giHlWDPFigr--~Laq~~---dapk~~a~~~ikcl~n-v-~~~iliAgcsaeSTVKl~DaRsce~~---------~- 865 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGR--LLAQME---DAPKEGAGGNIKCLEN-V-DRHILIAGCSAESTVKLFDARSCEWT---------C- 865 (1034)
T ss_pred cCcceeecccccc--hhHhhh---cCcccCCCceeEeccc-C-cchheeeeccchhhheeeecccccce---------e-
Confidence 8999999986532 110000 0011122233444421 1 3334 444478899999999886521 1
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
- -.+...++-...+.+++..|. |++++++-+.|.|.+.|.|+++.+.... |.+|
T Consensus 866 --E--------~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswr----pmec----------- 919 (1034)
T KOG4190|consen 866 --E--------LKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWR----PMEC----------- 919 (1034)
T ss_pred --e--------EEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCC----cccc-----------
Confidence 1 122333444567889999996 7999999999999999999997664431 0011
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCeEEE-EECCC
Q 004290 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL-MDVNH 310 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i-wd~~~ 310 (763)
....++ .|..+.|+....|.++.+ |-...
T Consensus 920 ------dllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 920 ------DLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred ------hhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 122222 345566666667777777 76555
No 257
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=2e-09 Score=72.92 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=37.7
Q ss_pred CcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (763)
Q Consensus 659 g~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~ 697 (763)
|+++++|++|.+.|++|+|+|++.+|||+|.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999999997
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2.4e-07 Score=100.21 Aligned_cols=229 Identities=13% Similarity=0.076 Sum_probs=128.6
Q ss_pred eeccccCceEEEEeCCCCCEEE---EEeCC--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC-
Q 004290 45 ELEGHQGCVNAISWNSKGSLLI---SGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA- 117 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~La---sgs~D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg- 117 (763)
.|......+.+=+|+|||+.++ +...+ ..|.+.++.+++..... ...+.....+|+|+ |+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD--G~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR--KKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC--CCEEEEEECCCCC
Confidence 3444555667789999997532 33333 35777788877643322 23445567899999 677766543 23
Q ss_pred ---cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC--CCCCCCCCCCCCCcc
Q 004290 118 ---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF--RQGSSCPPAGSSHQE 192 (763)
Q Consensus 118 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~~~~ 192 (763)
.+.+|++..+... .+..............+|+|++..++++...+|...+|.+ ......
T Consensus 255 ~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~--------- 318 (428)
T PRK01029 255 PDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS--------- 318 (428)
T ss_pred cceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc---------
Confidence 3444666542111 1122222223345678999955444444445676555543 221100
Q ss_pred cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004290 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
...+. .....+....|+|+ ++.|+..+.+ ..|.+||+.+++.....
T Consensus 319 ------------~~~lt---~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--------------- 367 (428)
T PRK01029 319 ------------PRLLT---KKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQLT--------------- 367 (428)
T ss_pred ------------eEEec---cCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------------
Confidence 00111 11224567889998 5666655433 36899999876531100
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004290 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
.+. ..+....|+|||++|+.... ...|++||+.+++.... ..........+|+|.
T Consensus 368 -----~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 368 -----TSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAF 425 (428)
T ss_pred -----CCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCC
Confidence 011 13567899999998886543 45799999988653332 233334456677764
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=4.3e-09 Score=121.11 Aligned_cols=192 Identities=14% Similarity=0.202 Sum_probs=154.5
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
-|-..|.++.=+|...+.+||+.||.|++|....+..+..+.......|+.+.|+.. |+.+..+..||.+.+|....
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccCC-
Confidence 345678888888888999999999999999999998888876666689999999999 78999999999999999883
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
++....+.|.....+..|-. ..+++++ .++.+.+||.-..... ..
T Consensus 2283 ----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~-----------s~-------- 2330 (2439)
T KOG1064|consen 2283 ----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN-----------SL-------- 2330 (2439)
T ss_pred ----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-----------ce--------
Confidence 55777889999999999964 5676765 4789999996544311 00
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
+ ...|...++++++.|. .++|++|+.+|.|++||++..+.+..+ ..
T Consensus 2331 ---v--~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~----------------------------~~ 2376 (2439)
T KOG1064|consen 2331 ---V--HTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTF----------------------------QA 2376 (2439)
T ss_pred ---e--eeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHh----------------------------hh
Confidence 1 1357888999999997 689999999999999999976544322 11
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
++ ...++++++..|.|+||++...
T Consensus 2377 --~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred --hh-hhheeeccCcccceEEEEcccc
Confidence 34 5578999999999999999885
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.93 E-value=1.3e-07 Score=103.26 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=123.3
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
..|.++|..... ...+ ..+...+.+.+|+|+ ++.|+.+..+ ..|++||+.++. ...+..+.+
T Consensus 170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 358888876443 3444 356667899999999 7888877654 479999998632 223334556
Q ss_pred ceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
.+..++|+|++..++++.+.++ .|++||+.+++.. .+.. +........|+|+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d 288 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD 288 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence 6778999996545555666555 5888888765411 0110 1112335679997
Q ss_pred CCcEEEEEeC-CC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--
Q 004290 227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (763)
Q Consensus 227 ~~~~l~sgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~-- 301 (763)
++.|+..+. ++ .|.++|+.+++... + .. +. ..+..+.|+|+|++|+.++.++
T Consensus 289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~~-l------------------~~--~~-~~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 289 -GKSIAFTSDRGGSPQIYMMDADGGEVRR-L------------------TF--RG-GYNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCEEE-e------------------ec--CC-CCccCeEECCCCCEEEEEEccCCc
Confidence 566665543 33 47777776543110 0 00 11 1366788999999999988876
Q ss_pred -eEEEEECCCCCccceEeecCCCCeeeeeccCCCCccc
Q 004290 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (763)
Q Consensus 302 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (763)
.|++||+.++... .. ..........|+|+...+.+
T Consensus 346 ~~i~~~d~~~~~~~-~l-~~~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 346 FNIAVMDLDGGGER-VL-TDTGLDESPSFAPNGRMILY 381 (417)
T ss_pred eEEEEEeCCCCCeE-Ec-cCCCCCCCceECCCCCEEEE
Confidence 8999999874322 11 11222334567777665543
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=8.3e-09 Score=108.92 Aligned_cols=163 Identities=16% Similarity=0.279 Sum_probs=124.8
Q ss_pred ceEEEEeCCCC--CEEEEEeCCCcEEEEeCCC--CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004290 52 CVNAISWNSKG--SLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 52 ~V~~l~fsp~g--~~Lasgs~D~~v~iWd~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.|-.+.|+|.. .+-+.........+|++.. ...+.-++.+|...|+.+.|+|.. ...+++++.|..|..||++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCC
Confidence 36677888743 3444444556678999864 334444447999999999999986 889999999999999999975
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
. .++..+.........++|+..+++.+++ +....|++||++.+..+
T Consensus 148 ~---------~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p------------------------ 193 (1081)
T KOG0309|consen 148 H---------RPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP------------------------ 193 (1081)
T ss_pred C---------cceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc------------------------
Confidence 4 4566666667778899999988888855 45578999999988632
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
+....+|...|+.++|+......+.+.+.|++|+.||.....
T Consensus 194 l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 194 LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 333345778889999987655688999999999999988643
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.89 E-value=6.8e-08 Score=100.46 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=142.5
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc--CCCCceEEEEEeeC------------------CCCcEEEEEeCCCc
Q 004290 59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPE------------------TSDELVVSGAGDAE 118 (763)
Q Consensus 59 sp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~--~h~~~V~~v~~~p~------------------~~~~~l~s~s~dg~ 118 (763)
.|-+.++|....||.++|||..+++....|.. .-++..++..|.-. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567999999999999999999887776632 12345555555421 01346788888999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
|.+|++..+.- .....-.+|.+.|+++.++. .-..|.|++.|+.+..|+.......
T Consensus 82 v~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~--------------- 137 (541)
T KOG4547|consen 82 VLLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII--------------- 137 (541)
T ss_pred EEEEEecCCeE--------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee---------------
Confidence 99999986431 11222247999999999987 6679999999999999998876521
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
+........+.+++.+|+ +..+++++ +.|++||+.+++.+.+| .||.
T Consensus 138 ----------~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~f--------------------tgh~ 184 (541)
T KOG4547|consen 138 ----------RIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITF--------------------TGHG 184 (541)
T ss_pred ----------eeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEe--------------------cCCC
Confidence 112234556789999998 78898887 68999999998766554 5566
Q ss_pred ccceeEEEEcCC-----CCEEEEEeC-CCeEEEEECCC
Q 004290 279 SLHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 279 ~~~i~~v~~spd-----g~~l~~~s~-d~~i~iwd~~~ 310 (763)
+ +|+++.|--+ |.+++++.. +..|.+|-+..
T Consensus 185 s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 185 S-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 6999999876 788777665 67788887765
No 263
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=8.9e-07 Score=94.61 Aligned_cols=233 Identities=12% Similarity=0.100 Sum_probs=151.1
Q ss_pred hhccccceeeccccCceEEEEeCCC------------CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004290 37 VRRLSQERELEGHQGCVNAISWNSK------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~------------g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
...++.+..+.-|...|+.+.|.|- .-+||++.-.|.|.|||...+..+..+ ..|..++..++|.|.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA 120 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence 4556788889999999999999872 136788888999999999998888888 788999999999985
Q ss_pred CC--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 105 TS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 105 ~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
.+ ...|+.-....+|.+|+..++. .+.....-.....|+.+.|.+.+.|..-+..|.+.+-+.-..+.
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCCc----------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 42 2467777778899999998753 24445444566777999998888777777778887776544332
Q ss_pred CCCCCCCCcccceEEEecCCCce------------eeccCCCCCccc---eEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 183 CPPAGSSHQECRNILLDLRCGAK------------RSLADPPKQTLS---LKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.. .....+.+...+. ......+..... ...++|+|.-.+.++ ......+.++|++-
T Consensus 191 p~--------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~ 261 (1062)
T KOG1912|consen 191 PD--------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEY 261 (1062)
T ss_pred CC--------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchh
Confidence 10 0000110000000 000011111111 123567886444444 34567788999986
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC--CEEEEEeCCCeEEEEECCC
Q 004290 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg--~~l~~~s~d~~i~iwd~~~ 310 (763)
...+....- .++ .+.-+.+-|++ ..|++...||.+.+|--+.
T Consensus 262 ~~~l~vvpi--------------------er~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 262 ECCLAVVPI--------------------ERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceeEEEEe--------------------ccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 654433211 111 24446666665 5688999999999997655
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.87 E-value=5.5e-08 Score=101.12 Aligned_cols=64 Identities=13% Similarity=0.319 Sum_probs=57.5
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCC-----C-CeEEEEeCCCcEEEEcCCC
Q 004290 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-----D-CVVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~-----~-~~laS~s~D~~IrvW~~~~ 700 (763)
.+|||+.|++|| +.|++||+++++.+..|.||.++|++++|--. | .+|.+...+.-|.+|-+..
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 799999999998 56999999999999999999999999999987 3 5777788888999997766
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=1.3e-06 Score=104.12 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEec--------------CCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCC
Q 004290 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG--------------DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g--------------H~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~ 700 (763)
++++|+.+++-+.+++|++||.+++.+.. +.| +-....+|+++++++++++-+.++.|++|++.+
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 78999999999999999999999887654 333 223577999999999999999999999999988
Q ss_pred CCC
Q 004290 701 SVP 703 (763)
Q Consensus 701 ~~~ 703 (763)
...
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 765
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=2.7e-06 Score=101.54 Aligned_cols=232 Identities=11% Similarity=0.071 Sum_probs=132.5
Q ss_pred EEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcc-CC------------CCceEEEEEeeCCCCcEEEE-EeCCCc
Q 004290 54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELVVS-GAGDAE 118 (763)
Q Consensus 54 ~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~-~h------------~~~V~~v~~~p~~~~~~l~s-~s~dg~ 118 (763)
..+++++ ++.++++-+.++.|++||... ..+..+-. +. -.....+++.++ ++.|+. -...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence 3678877 466777778889999999864 44444411 11 123578999998 455444 445678
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeec-----------------ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQC-----------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
|+++|+.+.. +.++.+ .-.....|+++|+++.++++.+.++.|++||..++.
T Consensus 648 Ir~id~~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 9999986532 111110 012346899999777788888889999999987754
Q ss_pred CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.......+.. . ...+.. ...........++|+|++..++++-+.++.|++||+.++............+
T Consensus 717 v~~~~G~G~~------~-~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 717 TRVFSGDGYE------R-NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred EEEEecCCcc------c-cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 2100000000 0 000000 0001123457899999854466667778999999998754211000000000
Q ss_pred Cccccccccc-ccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 262 PCVNYFCPMH-LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 262 ~~~~~~~~~~-~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.....+.... ......-. .-.+++++++|..+++-+.++.|++||..++
T Consensus 786 ~~l~~fG~~dG~g~~~~l~-~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQ-HPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred cccccccCCCCchhhhhcc-CCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 0000000000 00000001 2468999999998888888999999999874
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=7.4e-07 Score=83.64 Aligned_cols=212 Identities=12% Similarity=0.050 Sum_probs=137.1
Q ss_pred EEEeCC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 55 ~l~fsp-----~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
.+.|-| ...+||.|+.-|...+|.+.+.+....+-..|...|+-+.=.-+. ...+..++.|.++++.++.....
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence 456666 346899999999999999986553332213444433322211121 23466678899999999985321
Q ss_pred CCCCCCCCCCceeeecccCc--eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 130 RGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
.+.-|... +.++++++ ++.++++.+....|..|.+...... ... ++
T Consensus 151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~--------- 198 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IY--------- 198 (344)
T ss_pred ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eE---------
Confidence 12224333 78899999 7799999999999999988765421 000 00
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
+ ......-.+..|+.. ...||++..||++.|||+|............ +.|..+.+..+.|
T Consensus 199 ~---a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst----------------rp~hnGa~R~c~F 258 (344)
T KOG4532|consen 199 E---APTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISST----------------RPHHNGAFRVCRF 258 (344)
T ss_pred e---cccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhccc----------------CCCCCCceEEEEe
Confidence 0 011223356778886 5799999999999999999765322111111 2244447999999
Q ss_pred cCCCC--EEEEEeCCCeEEEEECCCCCccceEee
Q 004290 288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (763)
Q Consensus 288 spdg~--~l~~~s~d~~i~iwd~~~~~~~~~~~~ 319 (763)
++-|. +|+..-.-+.+.+-|+++....+....
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 98663 466666688999999999775544433
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.3e-06 Score=88.26 Aligned_cols=110 Identities=11% Similarity=0.167 Sum_probs=78.4
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-----------CCcEEE
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-----------DAEVRL 121 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-----------dg~I~i 121 (763)
=+-+.|||-|.+|+|--.- -|.+|--++-..++.| .|. .|.-+.|+|. .++|+|=+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF--YHP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhc--cCC-CceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence 3568999999999998775 4789987666667776 465 5889999999 799999653 256999
Q ss_pred EECCCCCCCCCCCCCCCCceeeec--ccCceeE-EEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQC--HTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~-l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
||+.++.. .+.|.. ....+.- ..||. +..++|-... .+|.||+..+.
T Consensus 287 WDI~tG~l----------krsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf 336 (698)
T KOG2314|consen 287 WDIATGLL----------KRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSF 336 (698)
T ss_pred EEccccch----------hcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCce
Confidence 99998532 333332 2222333 47888 5578876665 57888886653
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=5e-06 Score=90.00 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=51.9
Q ss_pred ccCCCCEEEEecCC---CcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEE-EeC--CCcEEEEcCCCCCCcc
Q 004290 635 LGQRGDYIASGSDD---GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT-SGI--DNTIKIWTPSASVPSI 705 (763)
Q Consensus 635 ~s~d~~~l~sgs~D---g~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS-~s~--D~~IrvW~~~~~~~~~ 705 (763)
|||||++|+..+.+ ..|++||+++|+... |......+....|+|++++|+- +.. ...|.+|++.+++...
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 89999998876543 469999999998754 4433456788999999987764 332 4578899998876543
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.68 E-value=4.1e-08 Score=66.40 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=36.5
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd 78 (763)
+++++|++|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 271
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.5e-07 Score=92.84 Aligned_cols=278 Identities=13% Similarity=0.101 Sum_probs=180.0
Q ss_pred cccccccccchhhh-hccccceeeccccCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004290 24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (763)
Q Consensus 24 ~~~~~~~~~~~~~~-~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~ 101 (763)
+..+..++.|...- ...+.++.++.|.+.|.+++.+-+|.+++|++. |+.++++|+++-..+.-+. -....-.+.|
T Consensus 26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK--L~~lPg~a~w 103 (558)
T KOG0882|consen 26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK--LVDLPGFAEW 103 (558)
T ss_pred eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc--cccCCCceEE
Confidence 45567777777554 556777888999999999999999999999887 9999999998755442221 1111223334
Q ss_pred eeCCCC----cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 102 VPETSD----ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 102 ~p~~~~----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
.... | .+-++...++.|.++|-..... +....-+-|..+|.++.+.| -+..+++....|.|.-|..
T Consensus 104 v~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 104 VTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred ecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEeecC
Confidence 3332 3 2334445689999999875321 22344456999999999999 5678888888999999987
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
...-+-+ -....+.++ +..-+..++.......++.|+|+ +..+.+-+.|..||+++..+++.+..+...
T Consensus 174 e~~~qfP--------r~~l~~~~K--~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 174 EGPFQFP--------RTNLNFELK--HETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred CCcccCc--------ccccccccc--ccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 7411000 001111111 11224444556677889999998 789999999999999999999987766543
Q ss_pred CCCCCcccc--ccccccc----------CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCe
Q 004290 258 MSPPPCVNY--FCPMHLS----------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (763)
Q Consensus 258 ~~~~~~~~~--~~~~~~~----------~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 325 (763)
.....+... +.-.+.. ..-+....-+.++|...|++|+.++-=| |++.++.+. .....++..+.++
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn-~v~ri~gk~e~ir 320 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN-TVVRILGKDEAIR 320 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC-eEEEEeccchhhh
Confidence 221111110 0001100 0123333567788999999999887654 788899884 3455555555444
Q ss_pred e
Q 004290 326 I 326 (763)
Q Consensus 326 ~ 326 (763)
.
T Consensus 321 ~ 321 (558)
T KOG0882|consen 321 F 321 (558)
T ss_pred h
Confidence 3
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.66 E-value=8.3e-07 Score=88.30 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=111.2
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEEC
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNL 124 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~ 124 (763)
.+..+..++.+++||.+..++...++++.... .+... .-....+++.|..+ ......+.. ...+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeecc
Confidence 34456677889999998888887777765432 22222 22334456666655 344444433 444555554
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
..+ +...+-+|-..++.|+|+| ++++|+++..|..|++-.......+
T Consensus 140 ~~~-----------~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I--------------------- 186 (390)
T KOG3914|consen 140 DSG-----------RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI--------------------- 186 (390)
T ss_pred ccc-----------CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch---------------------
Confidence 431 1344568999999999999 5589999999999999765443211
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~ 255 (763)
-...-+|+..|..++.-++ +.|++|+.|++|++||+++++.+.++.
T Consensus 187 ---esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 187 ---ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ---hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 1112368889999999985 579999999999999999999887664
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=2.1e-05 Score=75.56 Aligned_cols=230 Identities=14% Similarity=0.142 Sum_probs=132.5
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEE--EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290 56 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 56 l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~--~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
++.+++|++||.- .|..|.|=..... ..+.+ +.....-.-..++|+|+ +.+||.+...|+|+++|+.......
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence 5677899988876 4567777654432 12222 22222334578999999 7999999999999999998422111
Q ss_pred CCCCCCCCceee-ecccCceeEEEEecCC-----CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290 132 LDDNAITPSALY-QCHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 132 ~~~~~~~~~~~~-~~h~~~v~~l~~sp~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
. .+...+ ..-...|..|.|.+.. ...|+....+|.++=|-+..+.... ... .
T Consensus 80 I-----~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-------y~e----------~ 137 (282)
T PF15492_consen 80 I-----PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-------YQE----------N 137 (282)
T ss_pred c-----CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-------cee----------e
Confidence 0 111111 1124567777775422 2245566677877777654322110 000 0
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCC-----------CcEEEEeCCCCCCCcccCCCCCCC-------Cccccc
Q 004290 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSPP-------PCVNYF 267 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-----------g~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~ 267 (763)
..+.........|.++.++|. .++|++|+.. .-+.-|.+-++.+........... .+...+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 111222234568999999997 4677776531 236677776665543321111100 011111
Q ss_pred ccccc-cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 268 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 268 ~~~~~-~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....+ ...+.....|..|..||||..|++...+|.|.+|++.+-
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11111 111222335999999999999999999999999999884
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.64 E-value=8.4e-08 Score=110.94 Aligned_cols=153 Identities=18% Similarity=0.248 Sum_probs=119.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe---CCCcEEEEECCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRF 127 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s---~dg~I~iwd~~~~ 127 (763)
..|+.+.|+.+|+.+..+..||.+.+|.+. .+..... +.|......+.|.. ..+++++ .++.+.+||....
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccC
Confidence 778889999999999999999999999987 3444344 68998899999984 4677765 4788999998754
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004290 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
... .++. .+|.+.++++++.| ...+|++||.+|.|++||++..+..
T Consensus 2326 ~~~-------s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~------------------------ 2371 (2439)
T KOG1064|consen 2326 PMN-------SLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR------------------------ 2371 (2439)
T ss_pred ccc-------ceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHH------------------------
Confidence 322 1233 78999999999999 6689999999999999999987643
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004290 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~ 255 (763)
|.... ++ . ..+|++|+..|.|+||++.....+.+++
T Consensus 2372 ------h~~~~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 ------HTFQA----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ------HHhhh----hh-h-hheeeccCcccceEEEEccccchhhcCc
Confidence 11111 33 2 4699999999999999999876665553
No 275
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=3.2e-08 Score=106.49 Aligned_cols=213 Identities=15% Similarity=0.172 Sum_probs=146.9
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc
Q 004290 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 108 (763)
...-.....++++.++.|+.|+...+|++|+-+.+.|+.|+-.|.|+++++.+|...... .+|..+|+-+.=+-+ |.
T Consensus 1080 ~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~d--gs 1156 (1516)
T KOG1832|consen 1080 NRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVD--GS 1156 (1516)
T ss_pred CcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCC--cc
Confidence 333344567789999999999999999999999999999999999999999999888877 799999999998888 45
Q ss_pred EEEEE-eCCC-cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 109 LVVSG-AGDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 109 ~l~s~-s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
.+++. +... -..+|++.... .+.++|. .-.++.|+.. ...-+.|..-....+||+.++..+...
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~---------~~~Hsf~----ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTG---------GPRHSFD----EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred eeeeeccccCchHHHhcccccc---------Ccccccc----ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHh
Confidence 55444 4443 57899988521 2244443 3467888763 333334445567889999998754221
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
.++. ......-++..|+|.+ .+++ .|| .+||+|..+.+..|..-
T Consensus 1223 lt~~---------------------~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~f--------- 1266 (1516)
T KOG1832|consen 1223 LTDT---------------------VTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQF--------- 1266 (1516)
T ss_pred cCcc---------------------hhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhh---------
Confidence 1110 0112233678899974 4554 455 48999987655443210
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.. . + .=.|+|.|..++..+ .|||+++.+
T Consensus 1267 ----t~--~------~-~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1267 ----TD--Y------G-GGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ----ee--c------c-cccccCCCceEEeec-----hhhhhHHHH
Confidence 00 0 1 124999999998876 689999954
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=3.3e-07 Score=85.64 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=107.2
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC----
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG---- 115 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---- 115 (763)
.+.+.+..|+++=.+-+.+--++.++++..||.+.+.+.+.-. ..+.+..-|.+. .+.++... ++.+.++..
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~--~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRH--GNSILSGGCGNWN 156 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeec--ccEEecCCcceEe
Confidence 3444444444433333333456789999999999999976521 111221112211 22223333 344443321
Q ss_pred -CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 116 -DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 116 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
-+..++|+++..+. +..-+.-...|.+++-+|...+++++|+.||.+-+||.|....+
T Consensus 157 ~~d~~~a~~~~p~~t----------~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------- 215 (319)
T KOG4714|consen 157 AQDNFYANTLDPIKT----------LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------- 215 (319)
T ss_pred eccceeeeccccccc----------ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----------
Confidence 23456666664210 11111123349999999987788999999999999999987532
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
......|...++-+-|+|.++..|++++.||.+..||..+
T Consensus 216 -------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 -------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2223457788999999999999999999999999999885
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=6.1e-06 Score=85.58 Aligned_cols=196 Identities=11% Similarity=0.115 Sum_probs=126.9
Q ss_pred ccCceEEEEeCCCC--CEEEE-----EeCCCcEEEEeCCCCeE-----EEEEccCCCCceEEEEEeeCCCCcEEEEEe--
Q 004290 49 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA-- 114 (763)
Q Consensus 49 H~~~V~~l~fsp~g--~~Las-----gs~D~~v~iWd~~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s-- 114 (763)
|...|+.+.+||.+ ..+|+ ++.-..|+||.+..... .++|+ ...=..+.|++-+ ..+|+.++
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---kadkvqm~WN~~g-t~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---KADKVQMKWNKLG-TALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---ccceeEEEeccCC-ceEEEEEEEe
Confidence 57789999999864 34543 35667899998863221 12231 1222357788774 22333322
Q ss_pred CCC---------cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE-EeCCCcEEEEECCCCCCCC
Q 004290 115 GDA---------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP 184 (763)
Q Consensus 115 ~dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s-~s~dg~i~iwd~~~~~~~~ 184 (763)
-|. ++++.+++.. .....+ .-.++|+++.|+|.+..+.+. |-.--++.|||++..
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~----------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---- 304 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGE----------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---- 304 (566)
T ss_pred ecCCCccccccceEEEEEecCc----------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----
Confidence 233 4677766621 112222 247899999999955444333 445678999998754
Q ss_pred CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCC
Q 004290 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.++++.. ++=+++-|+|. |++|+.++.+ |.|-|||+.+.+.+..+..
T Consensus 305 -----------~v~df~e-------------gpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----- 354 (566)
T KOG2315|consen 305 -----------PVFDFPE-------------GPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----- 354 (566)
T ss_pred -----------EeEeCCC-------------CCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence 2333322 34568889997 7888887765 7899999998766544321
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCeEEEEECCCC
Q 004290 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHA 311 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~------d~~i~iwd~~~~ 311 (763)
..-+-+.|+|||+++++++. |+.++||+....
T Consensus 355 ------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 13567899999999999875 789999999874
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.59 E-value=0.00014 Score=74.89 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=58.5
Q ss_pred ccCCCCEEEEec----------CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEe-CCCcEEEEcCCCCC
Q 004290 635 LGQRGDYIASGS----------DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASV 702 (763)
Q Consensus 635 ~s~d~~~l~sgs----------~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s-~D~~IrvW~~~~~~ 702 (763)
+++|+++|+... ..+.|.++|.+|++.+..+.- ...+..++++||++ +|.+.. .++.|.+.|..+.+
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 788888777642 125799999999999998874 34799999999998 777555 68999999999998
Q ss_pred Ccccc
Q 004290 703 PSIVS 707 (763)
Q Consensus 703 ~~~~~ 707 (763)
.+...
T Consensus 334 ~i~~i 338 (352)
T TIGR02658 334 ELSSV 338 (352)
T ss_pred EEeee
Confidence 88765
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=6e-06 Score=87.51 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=119.0
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE---------------EEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---------------LHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~---------------~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
.....|++|+....++|.|+.||.++|..+.+... -+++ .||...|.-+.|+.+ .+.|-++.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--cccccccC
Confidence 35678999999999999999999999998865321 1233 699999999999988 68999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.+|.|.+|-+-.++... ...-...++.|.+|+|+. +|..+.....||.|.+=.+..+.
T Consensus 91 t~GlIiVWmlykgsW~E--------EMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR------------- 148 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCE--------EMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR------------- 148 (1189)
T ss_pred CCceEEEEeeecccHHH--------HHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-------------
Confidence 99999999998644211 122233567799999998 66888889999999887766543
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
+|. ..-.......+.|+++ ...++.+-..|.+.+||...
T Consensus 149 --Iwg-----------KeLkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 149 --IWG-----------KELKGQLLAHVLWSED-LEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred --ecc-----------hhcchheccceeeccc-HHHHHhhhcCCcEEEecccc
Confidence 111 1111223457889997 46777778889999999763
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.58 E-value=5.9e-05 Score=80.98 Aligned_cols=195 Identities=19% Similarity=0.138 Sum_probs=109.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
.+..++.++.++.|.-+|..+|+.+..+. .......... .+ +..++.++.++.+..+|..+++. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~--v~--~~~v~v~~~~g~l~ald~~tG~~----------~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVG--AD--GGLVFVGTEKGEVIALDAEDGKE----------L 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceE--Ec--CCEEEEEcCCCEEEEEECCCCcE----------e
Confidence 36678888899999999999999887662 2221111222 23 46788888899999999987432 2
Q ss_pred eeeecccCceeE-EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceE
Q 004290 141 ALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (763)
Q Consensus 141 ~~~~~h~~~v~~-l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 219 (763)
..... .+.+.+ .... + ..++.++.+|.|+.||.++++. +|........ + ..... .
T Consensus 129 W~~~~-~~~~~~~p~v~--~-~~v~v~~~~g~l~a~d~~tG~~--------------~W~~~~~~~~-~-~~~~~----~ 184 (377)
T TIGR03300 129 WRAKL-SSEVLSPPLVA--N-GLVVVRTNDGRLTALDAATGER--------------LWTYSRVTPA-L-TLRGS----A 184 (377)
T ss_pred eeecc-CceeecCCEEE--C-CEEEEECCCCeEEEEEcCCCce--------------eeEEccCCCc-e-eecCC----C
Confidence 22221 122221 1121 3 3566677899999999998863 2222111000 0 00000 0
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc-cceeEEEEcC--CCCEEEE
Q 004290 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSP--NGEEVLL 296 (763)
Q Consensus 220 ~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~v~~sp--dg~~l~~ 296 (763)
+..+. +..++.+..++.+..+|+++++.+........ .+... ..+..+.-+| .+..+++
T Consensus 185 sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~---------------~g~~~~~~~~~~~~~p~~~~~~vy~ 246 (377)
T TIGR03300 185 SPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRVALP---------------KGRTELERLVDVDGDPVVDGGQVYA 246 (377)
T ss_pred CCEEE---CCEEEEECCCCEEEEEEccCCCEeeeeccccC---------------CCCCchhhhhccCCccEEECCEEEE
Confidence 11111 13678888899999999998875433211000 00000 0000000011 2457888
Q ss_pred EeCCCeEEEEECCCCC
Q 004290 297 SYSGEHVYLMDVNHAG 312 (763)
Q Consensus 297 ~s~d~~i~iwd~~~~~ 312 (763)
++.++.++.||..+++
T Consensus 247 ~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 247 VSYQGRVAALDLRSGR 262 (377)
T ss_pred EEcCCEEEEEECCCCc
Confidence 8889999999988753
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.57 E-value=2.5e-05 Score=80.38 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=136.3
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEccCC-----
Q 004290 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGH----- 92 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~----------D~~v~iWd~~~~~~~~~~~~~h----- 92 (763)
.++.+-+ ..+.+.+..+..-..+- .+ ++|||+.|..+.. +..|.+||..+.+.+..+..+-
T Consensus 27 ~~v~ViD--~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTID--GEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEE--CCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 3444444 44556666665333222 24 9999998876654 7899999999999998884321
Q ss_pred -CCceEEEEEeeCCCCcEEEEEe-C-CCcEEEEECCCCCCCCCCCCCCCCceeeec------------------------
Q 004290 93 -SANVFCTKFVPETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------------ 145 (763)
Q Consensus 93 -~~~V~~v~~~p~~~~~~l~s~s-~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------------------ 145 (763)
......++++|+ |++|+... . +..|-+.|+.+++-..... ...+...+..
T Consensus 103 ~~~~~~~~~ls~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 103 VGTYPWMTSLTPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred ccCccceEEECCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEe-CCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 122347899999 78888766 3 6889999998643111000 0000000000
Q ss_pred ---ccCceeEE---------EEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290 146 ---HTRRVKKL---------AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (763)
Q Consensus 146 ---h~~~v~~l---------~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (763)
....+..- .|.+.++.+++...+ |+|.+.|+....... ...+.+-......-. -
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~~~~~---w 245 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAEKADG---W 245 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeeccccccccc---c
Confidence 00000000 223323344444433 777777755433110 000000000000000 0
Q ss_pred CccceEEEEEeCCCCcEEEEEe----------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004290 214 QTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
....+.-++++|++ +.+++.. ..+.|.++|..+++.+..+.. |+ .+.
T Consensus 246 rP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------------------G~---~~~ 302 (352)
T TIGR02658 246 RPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------------------GH---EID 302 (352)
T ss_pred CCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-------------------CC---cee
Confidence 11222338999984 5555532 225799999998876544321 11 488
Q ss_pred EEEEcCCCC-EEEEEe-CCCeEEEEECCCCCccceE
Q 004290 284 HVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMR 317 (763)
Q Consensus 284 ~v~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~~ 317 (763)
.++++||++ +|++.. .++.|.++|..+++.....
T Consensus 303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 303 SINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999999 888776 4889999999997644433
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=0.0001 Score=73.03 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=157.6
Q ss_pred cccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCC--CeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcE
Q 004290 48 GHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 119 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~--~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I 119 (763)
.+.+.++-|+|+|+++.|.++.. +|.|-.|.++. |+... .. ..-..+.+.++++++ +++++++.. .|.|
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence 46778899999999999988855 47777776664 54322 22 122334488999999 788888876 6889
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCc----------eeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCC
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~ 188 (763)
.++-++.. +.. ..++.. ..|.+. +....+.| +++++++..- --.|.+|++..++......
T Consensus 114 ~v~p~~~d-G~l-----~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~- 184 (346)
T COG2706 114 SVYPLQAD-GSL-----QPVVQV-VKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP- 184 (346)
T ss_pred EEEEcccC-Ccc-----ccceee-eecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc-
Confidence 99999763 222 122232 335555 88999999 5567666542 3469999999776431110
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEeCCCC-CCCcccCCCCCCCCcccc
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 266 (763)
.. . ........|.|+|+ +++..+ .--+++|-+|..... ..+..++....
T Consensus 185 -------------------~~-v-~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t------- 235 (346)
T COG2706 185 -------------------AE-V-KPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT------- 235 (346)
T ss_pred -------------------cc-c-CCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc-------
Confidence 00 0 11234578999997 555544 456899999998864 22222111100
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCccceE----eecCCCCeeeeeccCCCCcccCCC
Q 004290 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR----YTVGDASKIMSFTPTLNGLELQPP 341 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~ 341 (763)
+...-....+...|.++|||++|.++.. ...|-+|.+......... ...+..++.+.++|...-+....+
T Consensus 236 -----lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 236 -----LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred -----CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 0111112225788999999999998876 568999988764322221 223445778888887766655555
Q ss_pred CCcc
Q 004290 342 IHDF 345 (763)
Q Consensus 342 ~~~~ 345 (763)
.++.
T Consensus 311 ~sd~ 314 (346)
T COG2706 311 KSDN 314 (346)
T ss_pred CCCc
Confidence 4443
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=0.00015 Score=71.93 Aligned_cols=201 Identities=16% Similarity=0.168 Sum_probs=120.9
Q ss_pred CCcEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCCCCCCCCCCCCceeeec
Q 004290 71 DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (763)
Q Consensus 71 D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 145 (763)
++-|.+|++.+. +........+.+.++-|+|+|+ .+.|.++..+ |.|-.|.+...++.. ..+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence 567999998742 2221111367788999999999 6788887654 778888777533322 11222222
Q ss_pred ccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004290 146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (763)
Q Consensus 146 h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 224 (763)
-..+.+.+++++ ++++++++. .-|.|.++-++..-.+... ...+.....+.. .+....-+-...|.
T Consensus 87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-------v~~~~h~g~~p~-----~rQ~~~h~H~a~~t 153 (346)
T COG2706 87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPV-------VQVVKHTGSGPH-----ERQESPHVHSANFT 153 (346)
T ss_pred CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccc-------eeeeecCCCCCC-----ccccCCccceeeeC
Confidence 233448899999 556666665 4688999988764222100 001111111100 00111226678899
Q ss_pred CCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCe
Q 004290 225 STRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH 302 (763)
Q Consensus 225 p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~ 302 (763)
|+ +++|++... --.|.+|++..+.... ..+..+. .+..-+.|+|+|++++..+... +++
T Consensus 154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~--------------~~~~~v~----~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTP--------------ADPAEVK----PGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CC-CCEEEEeecCCceEEEEEcccCcccc--------------ccccccC----CCCCcceEEEcCCCcEEEEEeccCCE
Confidence 98 567776653 3579999999664321 1111111 1113567999999999998887 999
Q ss_pred EEEEECCCC
Q 004290 303 VYLMDVNHA 311 (763)
Q Consensus 303 i~iwd~~~~ 311 (763)
|.+|..+..
T Consensus 215 V~v~~y~~~ 223 (346)
T COG2706 215 VDVLEYNPA 223 (346)
T ss_pred EEEEEEcCC
Confidence 999999884
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.54 E-value=4e-05 Score=82.31 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=108.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
++..++.++.++.|..+|..+|+.+..... ...+.+.-... +..++.++.++.|..||..+++. +
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~~----------~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGER----------L 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEEE---CCEEEEECCCCeEEEEEcCCCce----------e
Confidence 466788888999999999999998876622 22232211112 35677778899999999987532 2
Q ss_pred eeeecccCce-----eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290 141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (763)
Q Consensus 141 ~~~~~h~~~v-----~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (763)
..+......+ .+.... + ..++.+..++.+..+|+++++.. |............. ...
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~--------------W~~~~~~~~g~~~~-~~~ 230 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPL--------------WEQRVALPKGRTEL-ERL 230 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEe--------------eeeccccCCCCCch-hhh
Confidence 2222111110 111222 2 35667888899999999887632 21110000000000 000
Q ss_pred cceE-EEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE
Q 004290 216 LSLK-SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (763)
Q Consensus 216 ~~v~-~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l 294 (763)
..+. +..+. +..+++++.++.++.||+.+++.+.... .. ...... .++..|
T Consensus 231 ~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~---------------------~~--~~~~p~--~~~~~v 282 (377)
T TIGR03300 231 VDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRD---------------------AS--SYQGPA--VDDNRL 282 (377)
T ss_pred hccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeec---------------------cC--CccCce--EeCCEE
Confidence 0000 11111 3478888899999999999886443221 00 011111 245678
Q ss_pred EEEeCCCeEEEEECCCCC
Q 004290 295 LLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 295 ~~~s~d~~i~iwd~~~~~ 312 (763)
++++.||.|+.+|..+++
T Consensus 283 yv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGS 300 (377)
T ss_pred EEECCCCeEEEEECCCCc
Confidence 888899999999998753
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-06 Score=82.91 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=113.8
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeeccc------------CceeEEEEecC-
Q 004290 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT------------RRVKKLAVEVG- 158 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~sp~- 158 (763)
....|+++.|... |.+|++|...|.|.+|.-....+.. .+....|.+|. ..|..+.|..+
T Consensus 25 ead~ItaVefd~t--g~YlatGDkgGRVvlfer~~s~~ce-----ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 25 EADKITAVEFDET--GLYLATGDKGGRVVLFEREKSYGCE-----YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred ccceeeEEEeccc--cceEeecCCCceEEEeecccccccc-----hhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence 4467899999988 8999999999999999877543211 12233344443 35778877643
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCC-----------CCCCc-ccceEEEecCCCceeec------cCCCCCccceEE
Q 004290 159 NPHVVWSASEDGTLRQHDFRQGSSCPPA-----------GSSHQ-ECRNILLDLRCGAKRSL------ADPPKQTLSLKS 220 (763)
Q Consensus 159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~ 220 (763)
+...|+..+.|++|++|-+......... ..+.. .....+..--..+...+ .....|..-|++
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 3345667778999999999876321000 00000 00000000000000000 112457788999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC--CCccceeEEEEcCCC-CEEEEE
Q 004290 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG--RSSLHLTHVTFSPNG-EEVLLS 297 (763)
Q Consensus 221 i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~i~~v~~spdg-~~l~~~ 297 (763)
+.|+.+. ..++ ...|=.|.+|++........+ ..+.++. .-...|++..|+|.. ..+..+
T Consensus 178 iS~NsD~-et~l-SaDdLrINLWnl~i~D~sFnI---------------VDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 178 ISFNSDK-ETLL-SADDLRINLWNLEIIDGSFNI---------------VDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred eeecCch-heee-eccceeeeeccccccCCceEE---------------EeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 9999973 4444 556788999998753311111 1111100 001148899999964 445567
Q ss_pred eCCCeEEEEECCC
Q 004290 298 YSGEHVYLMDVNH 310 (763)
Q Consensus 298 s~d~~i~iwd~~~ 310 (763)
+..|.|++-|++.
T Consensus 241 sSkG~Ikl~DlRq 253 (460)
T COG5170 241 SSKGEIKLNDLRQ 253 (460)
T ss_pred cCCCcEEehhhhh
Confidence 7799999999886
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=8.4e-07 Score=82.96 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=104.5
Q ss_pred CCCEEEEEeC-----CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290 61 KGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (763)
Q Consensus 61 ~g~~Lasgs~-----D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 135 (763)
.+++|.++.. -+..++|+++..+.+..- ..-...|.+++-+|.. .+++++|+.||.+-+||.+...
T Consensus 143 ~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~------- 213 (319)
T KOG4714|consen 143 HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-KKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA------- 213 (319)
T ss_pred cccEEecCCcceEeeccceeeeccccccccccc-ccccccchhhhCCccc-ccEEEEecCCCeEEEEEccccc-------
Confidence 4555554422 235667777654332221 1122349999999986 7889999999999999999742
Q ss_pred CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee----ccCC
Q 004290 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS----LADP 211 (763)
Q Consensus 136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 211 (763)
.+...++.|+.+|..+.|+|.++..|+++++||.+..||..+.-.. . .........| +.....+. -...
T Consensus 214 --~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~--i--~~~~s~~s~W-LsgD~v~s~i~i~~ll 286 (319)
T KOG4714|consen 214 --MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS--I--SNQASVISSW-LSGDPVKSRIEITSLL 286 (319)
T ss_pred --chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE--e--cCcccccccc-ccCCcccceEeeeccc
Confidence 4577788999999999999999999999999999999998752211 0 0000000011 00000110 0111
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd 244 (763)
+.....|+++... +..|++|+.-+.|++++
T Consensus 287 ~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 287 PSRSLSINSFDVL---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceeeeeeecc---CceEEeccccceEEEec
Confidence 2233445555554 45899999999998875
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.48 E-value=3.1e-05 Score=74.34 Aligned_cols=196 Identities=13% Similarity=0.108 Sum_probs=116.3
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC------CCceEEEEEeeCCC----CcEEEEEeCCCcEEE
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------SANVFCTKFVPETS----DELVVSGAGDAEVRL 121 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h------~~~V~~v~~~p~~~----~~~l~s~s~dg~I~i 121 (763)
.=+-++||||+.+||.+...|+|+++|+.. ..+..+...+ ...|..+.|.+... ...|+.-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 346799999999999999999999999975 3344443222 35677787876420 124666677888888
Q ss_pred EECCCCCCCCCCCCCCCCceee--e-cccCceeEEEEecCCCCEEEEEe-CCC----------cEEEEECCCCCCCCCCC
Q 004290 122 FNLSRFSGRGLDDNAITPSALY--Q-CHTRRVKKLAVEVGNPHVVWSAS-EDG----------TLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~--~-~h~~~v~~l~~sp~~~~~l~s~s-~dg----------~i~iwd~~~~~~~~~~~ 187 (763)
|-+..+..+. ......+ . .+...|.++.++|.. ++|+.|| ... -+..|-+-...+--...
T Consensus 124 y~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 124 YLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred EEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 8764321111 1112222 2 246789999999954 5555554 322 24456554443221100
Q ss_pred CCCccc------ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004290 188 SSHQEC------RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 188 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
....+. ...++.+. ..+...........|..+..+|+ +..||+...+|.|.+|++.+..........
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~--~~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIP--SFKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cccCccccccccccceeecc--ceeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 000000 00111111 00011111234567999999997 789999999999999999988766655443
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.47 E-value=1.3e-05 Score=75.55 Aligned_cols=199 Identities=13% Similarity=0.026 Sum_probs=133.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEccCCCC--ceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA--NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
-+..++.|.++++.+++.+...... |.. .++++.++++ +.++++.+....|..|.+....... +.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~ 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------EN 196 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------ee
Confidence 3567788889999888755332222 333 3889999999 7999999999999999998643221 22
Q ss_pred -eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290 142 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (763)
Q Consensus 142 -~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (763)
....-.+.=.+..|+. ....||++..||++.|||+|....+.. ..-...+.|.+.+..
T Consensus 197 ~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~--------------------~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMA--------------------EISSTRPHHNGAFRV 255 (344)
T ss_pred eEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchh--------------------hhcccCCCCCCceEE
Confidence 2233445557788987 558999999999999999998653210 112233568899999
Q ss_pred EEEeCCCC-cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004290 221 CDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 221 i~~~p~~~-~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
+.|++.+. .+|+..-.-+.+.+.|+|++.....+.. +. -....|....|..-.|+.++.-+.+.+.
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i------------~~-d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI------------PD-DVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCceeeEEec------------Cc-cccccccccccccccccCCCcccccccc
Confidence 99997543 3455555568899999999875432211 00 0112233335888889888877776665
Q ss_pred CCeEEEEECCC
Q 004290 300 GEHVYLMDVNH 310 (763)
Q Consensus 300 d~~i~iwd~~~ 310 (763)
+ .+.-|++.+
T Consensus 323 ~-~~ae~ni~s 332 (344)
T KOG4532|consen 323 L-QGAEYNILS 332 (344)
T ss_pred h-hhheeeccc
Confidence 5 345566655
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=5.4e-07 Score=87.52 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=111.4
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec
Q 004290 66 ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (763)
Q Consensus 66 asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 145 (763)
++.+.+..|-+-|+++|... .| ...+.|+++.|... ++++..|..+|.|...|++..... ...+...+.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG-----~~~~a~rly- 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQG-----NGWCAQRLY- 296 (425)
T ss_pred ecccccceeEEEEeeccccc-cc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccC-----CCcceEEEE-
Confidence 55666778899999887543 33 35678999999987 699999999999999999975211 123455554
Q ss_pred ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce--EEEEE
Q 004290 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL--KSCDI 223 (763)
Q Consensus 146 h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~ 223 (763)
|...|++|..-..++.+|++.+.+|+|++||+|.-+... .+....+|...- .-+..
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------------~V~qYeGHvN~~a~l~~~v 354 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------------SVMQYEGHVNLSAYLPAHV 354 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------------ceeeeeccccccccccccc
Confidence 899999998766466788888999999999999876321 111111221111 11223
Q ss_pred eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004290 224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (763)
Q Consensus 224 ~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~ 256 (763)
++.+ ..+++++.|...|||.++.++.+.+++.
T Consensus 355 ~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 355 KEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccc-ceEEEccCeeEEEEEecccCceeeccCC
Confidence 4543 4777899999999999999988776643
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=6.5e-07 Score=91.76 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=121.4
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 164 (763)
+..+ .||...|..++-..+ .+-+++++.|++|++|.++.... ......+..++..|+.+|.++.|-. +-++++
T Consensus 728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD---~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~ 800 (1034)
T KOG4190|consen 728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGD---EIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA 800 (1034)
T ss_pred eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccC---ccccceeeeEhhhccCcccceeeee-ccceee
Confidence 4455 799999988876666 68899999999999999985221 1122346778899999999999987 445664
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd 244 (763)
+.||.|.+||.--+....+ ..+..+. +..+.|.++.-- +..-+++-++...+|+++|
T Consensus 801 --ScD~giHlWDPFigr~Laq----------~~dapk~----------~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 801 --SCDGGIHLWDPFIGRLLAQ----------MEDAPKE----------GAGGNIKCLENV-DRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred --eccCcceeecccccchhHh----------hhcCccc----------CCCceeEecccC-cchheeeeccchhhheeee
Confidence 4589999999766553311 1111111 112233333221 2233444447889999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.|...-...+. .+.. .+. +..+.+++..|.|++++++-..|+|.+.|.++++
T Consensus 858 aRsce~~~E~k-----------Vcna----~~P-na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 858 ARSCEWTCELK-----------VCNA----PGP-NALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cccccceeeEE-----------eccC----CCC-chheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 99865332221 1100 112 2248899999999999999999999999999975
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=9.9e-05 Score=79.40 Aligned_cols=193 Identities=9% Similarity=0.070 Sum_probs=112.6
Q ss_pred ceEEEEeCCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCC--CcEEEEEC
Q 004290 52 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD--AEVRLFNL 124 (763)
Q Consensus 52 ~V~~l~fsp~g~~-Lasgs~---D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~d--g~I~iwd~ 124 (763)
.+..-.|+|||+. ++..+. +..|.++|+.+++..... ...+.+....|+|+ |+.| ++.+.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEEC
Confidence 6778999999984 664443 356889999888755443 24455677889999 5544 455444 45777777
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
..+. ...+..+........|+|++..++++....+ .|++.|+.+++.
T Consensus 265 ~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-------------------- 313 (419)
T PRK04043 265 NTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-------------------- 313 (419)
T ss_pred CCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------------------
Confidence 6532 2333333333345689996655555554444 466677766542
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---------CcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004290 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
..+... +. ....|+|+ ++.|+..+.. ..|.+.|+.++... .+ .
T Consensus 314 ---~rlt~~-g~----~~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L------------------T 365 (419)
T PRK04043 314 ---EQVVFH-GK----NNSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL------------------T 365 (419)
T ss_pred ---EeCccC-CC----cCceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC------------------C
Confidence 111111 11 11379998 5555555433 25777787765421 00 0
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004290 274 EHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~ 311 (763)
..+ ......|+|||+.|+..+.+ ..+.+.++...
T Consensus 366 ~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 366 ANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 001 12247899999988876652 24667777653
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.40 E-value=4.1e-05 Score=77.74 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=96.4
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~-~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++..+ + .+.-+.|.++..+|+ |++++.+.....|.+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence 6888899999999999999999999 89999999887544 3 356689999999999 89999999888999999998
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC----CcEEEEECCCCCC
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSS 182 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d----g~i~iwd~~~~~~ 182 (763)
+.. ...-+...+-|+..+|+| ++++|+-+--+ ..|+++|+..++.
T Consensus 433 gnv----------~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 433 GNV----------RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCe----------eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 542 222234567799999999 66888766544 4789999988653
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=1.4e-05 Score=87.39 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=133.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
++..++-|+-...+..+|+.+.+..+.. .-..+.|+-++.+ ++.+.+|...|+|.+-|.++ .+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s----------~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNS----------FETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCc----------Ccee
Confidence 3456777777778889999988877665 2233346655544 68999999999999999987 4668
Q ss_pred eeeecccCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290 141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
+++.+|.+.|.++.. .+++|+|||. |.-|+|||+|..+.+..+...
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------------------- 265 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------------------- 265 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence 999999999998877 4578888874 567899999987754222111
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004290 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
....-+.|.|.-...+++.+..|...+-|..+...- +.-+..+ . ..+..+.++++|++|
T Consensus 266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP---------~~~~~~v-----~---p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP---------PAGVKMV-----N---PNGSGISAFDISSNG 324 (1118)
T ss_pred ----cCchhhhhcccccceEEEEecccceeeccccccCCC---------ccceeEE-----c---cCCCcceeEEecCCC
Confidence 111345678876788999999999999985443210 0001111 0 111139999999999
Q ss_pred CEEEEEeCCCeEEEEE
Q 004290 292 EEVLLSYSGEHVYLMD 307 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd 307 (763)
..++.+..+|.|.+|.
T Consensus 325 ~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEecccCcEeeec
Confidence 9999999999999997
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.30 E-value=3.1e-06 Score=84.34 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=76.8
Q ss_pred eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce-eeeccc
Q 004290 69 SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHT 147 (763)
Q Consensus 69 s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~h~ 147 (763)
++.+.+.+|....+.+... -||-+.++.++|+|| +++|+++..|..|++-...... .+. -..||+
T Consensus 129 gD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~f----------~IesfclGH~ 194 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPATF----------VIESFCLGHK 194 (390)
T ss_pred CCceeeeeecccccCcchh--hhhhhhhheeeecCC--CCEEEEecCCceEEEEecCccc----------chhhhccccH
Confidence 4445555666555444433 389999999999999 7999999999999997776421 122 235799
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
..|..|+.-+ + ..|+++|.|++|++||+++++.+
T Consensus 195 eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeecc-C-ceeeecCCCCcEEEEecccCCcc
Confidence 9999999987 3 56889999999999999999865
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=6.5e-05 Score=80.84 Aligned_cols=246 Identities=18% Similarity=0.197 Sum_probs=163.0
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC----------CCcEEEEEeCCCcE
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET----------SDELVVSGAGDAEV 119 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~----------~~~~l~s~s~dg~I 119 (763)
...-.++.|+|.| +||-|+. ..|.+-|..+-+.+..+ ..|...|+.+.|.|.. ..-+|+++...|.|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3346789999877 6777776 47899999999999998 7899999999999852 12367888889999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
.+||+.... .+..+..|.+++..+.|-|. ...+++.-....+|.+|+..+++ .
T Consensus 92 il~d~~~~s----------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--------------k 147 (1062)
T KOG1912|consen 92 ILVDFVLAS----------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--------------K 147 (1062)
T ss_pred EEEEehhhh----------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--------------e
Confidence 999998743 24556778899999999762 22567777777899999999886 3
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc----ccc
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP----MHL 272 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 272 (763)
+|.... ......|+.++|-+...|..-+..|.+-+-+.-....-.. |...++...+ .|+
T Consensus 148 ~Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~------pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 148 FWKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV------PGKEFQITSDHSDLAHL 210 (1062)
T ss_pred eecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC------CceeEEEecCccchhhh
Confidence 343332 2345677888998788888888888887776543221100 0000000000 000
Q ss_pred cC-----CCCCc-----c---ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccC
Q 004290 273 SE-----HGRSS-----L---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (763)
Q Consensus 273 ~~-----~g~~~-----~---~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 339 (763)
+. ..+.. . ..-.++|+|.-+.++-..--..+.++|+.-........-.......+.+-|+.+...+.
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 00 00000 0 12235788877777777778889999998865555555555556667777766555443
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.3e-05 Score=75.62 Aligned_cols=86 Identities=12% Similarity=0.234 Sum_probs=74.4
Q ss_pred ccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
+....+.+|...|..++|||..+ +|..++-+.+|+|.|+++..++..+ ..+ ..+++++|.-+. .++|..|-..|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNGMV 260 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCceE
Confidence 33446778899999999999776 8889999999999999999888887 455 789999999986 7889999999999
Q ss_pred EEEECCCCCC
Q 004290 120 RLFNLSRFSG 129 (763)
Q Consensus 120 ~iwd~~~~~~ 129 (763)
.|||++...+
T Consensus 261 lvyD~R~~~~ 270 (463)
T KOG1645|consen 261 LVYDMRQPEG 270 (463)
T ss_pred EEEEccCCCc
Confidence 9999997653
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.22 E-value=0.00013 Score=74.32 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=116.0
Q ss_pred eCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCC
Q 004290 58 WNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-EVRLFNLSRFSGRGLDDN 135 (763)
Q Consensus 58 fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~~ 135 (763)
|++ +|.++|..|. |++.|.+...+-.++ .+|.+.|.-..+.-+ +.-++.|..|| .+-|+|...+.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e------- 393 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGE------- 393 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCce-------
Confidence 443 7899999887 788888876665543 478888999888888 56888999999 89999999743
Q ss_pred CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (763)
Q Consensus 136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (763)
...+...-+.|.+|..+| ++.+++.+.....|.+.|+.++... +++ ....
T Consensus 394 ----~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~-------------~id------------kS~~ 443 (668)
T COG4946 394 ----VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVR-------------LID------------KSEY 443 (668)
T ss_pred ----EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCee-------------Eec------------cccc
Confidence 566677788999999999 6688888888888999999988621 221 1234
Q ss_pred cceEEEEEeCCCCcEEEEEeCCC----cEEEEeCCCCCC
Q 004290 216 LSLKSCDISSTRPHLLLVGGSDA----FARLYDRRMLPP 250 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~Dg----~i~iwd~~~~~~ 250 (763)
.-|+.++|+|+ +.+||-+--+| .|++||+..++.
T Consensus 444 ~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 444 GLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeE
Confidence 56899999997 78999887765 589999998653
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=4e-06 Score=81.67 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=108.5
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
++|+-+..+.. ++.+.+-.|-+-|+.++- .+.|. -++.|.++.|.. .+.++..|+..|.|..+|+|
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR 282 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR 282 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence 46664432333 566667888888988743 23343 567788999987 45788899999999999999
Q ss_pred CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC
Q 004290 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (763)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~ 258 (763)
... .+...+...++ |...|+++..-.....+|++.+.+|+|++||.|.-+.-..
T Consensus 283 ~rn------qG~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~----- 336 (425)
T KOG2695|consen 283 CRN------QGNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS----- 336 (425)
T ss_pred ecc------cCCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc-----
Confidence 873 22233333333 4566777766553357899999999999999997654110
Q ss_pred CCCCcccccccccccCCCCCccc-eeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 259 SPPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~-i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+..+ .||-+.. -.-+-..+....+++++.|...+||.+.++.
T Consensus 337 -----V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 337 -----VMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred -----eeee-------ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 2222 3332210 1112345667789999999999999999864
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.19 E-value=0.00025 Score=73.05 Aligned_cols=246 Identities=13% Similarity=0.112 Sum_probs=148.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCC---------------cEEEEeCCCCeEEEEEccCCCCc--eE-EEEEeeCCCCcEEEE
Q 004290 51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS 112 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~---------------~v~iWd~~~~~~~~~~~~~h~~~--V~-~v~~~p~~~~~~l~s 112 (763)
..|.-+.|+|.+++|.+-+.-. .+.+||+.+|..+..+ .+-..+ .+ -+.|+-+ +.+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence 4589999999999999876533 4999999999999888 444444 44 6788887 566555
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEE-----EeCCCcEEEEECCCCCCCCCC
Q 004290 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~ 186 (763)
. ....++|+++ +..-. ..+...++ ...|....|+|. ++..|+. .+.++++++|.+..++.+...
T Consensus 149 v-v~~sl~i~e~-t~n~~------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIE------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred h-ccCeEEEEec-CCccc------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 4 3457999997 32211 12223332 356778888885 2233332 456788999998865533100
Q ss_pred -----------CCCCcccce-------------------EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-
Q 004290 187 -----------GSSHQECRN-------------------ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG- 235 (763)
Q Consensus 187 -----------~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs- 235 (763)
......... .++.++.. .+.......++|...+|.|. ++.|++.+
T Consensus 219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~i~V~~~~~~pVhdf~W~p~-S~~F~vi~g 294 (561)
T COG5354 219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---SIPVEKDLKDPVHDFTWEPL-SSRFAVISG 294 (561)
T ss_pred eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---ccceeccccccceeeeeccc-CCceeEEec
Confidence 000000011 11111111 11111134678999999997 56665544
Q ss_pred -CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCC
Q 004290 236 -SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA 311 (763)
Q Consensus 236 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~ 311 (763)
.+..+-++|++.. . ..+. ... .-+.+.|+|.+++++.++- .|.|.+||....
T Consensus 295 ~~pa~~s~~~lr~N-l--------------~~~~--------Pe~-~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 295 YMPASVSVFDLRGN-L--------------RFYF--------PEQ-KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccccceeecccccc-e--------------EEec--------CCc-ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 7788999999864 1 1111 111 2455789999999999876 478999998874
Q ss_pred CccceEeecCCCCeeeeeccCCCCccc
Q 004290 312 GGRAMRYTVGDASKIMSFTPTLNGLEL 338 (763)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ 338 (763)
. .......+...+...|+|+++-...
T Consensus 351 f-~~~~~~~~~n~s~~~wspd~qF~~~ 376 (561)
T COG5354 351 F-KVAGAFNGLNTSYCDWSPDGQFYDT 376 (561)
T ss_pred e-EEEEEeecCCceEeeccCCceEEEe
Confidence 3 2222223344455668887654443
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.4e-05 Score=83.61 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=126.9
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
.+.+.|++++ +++|+-|..+|.|++.+....- .+. ..|... +..|.+++||+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~-~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN-FDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc-cccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4567788876 7899999999999999986443 333 345443 33389999999999999998876432
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecC----CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004290 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
...+ ....++.+|+++|+ ....+++||.-| +.++.-+=-...
T Consensus 106 ----------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------- 151 (846)
T KOG2066|consen 106 ----------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------- 151 (846)
T ss_pred ----------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence 2222 25678999999995 346788999988 766642211100
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004290 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v 285 (763)
..+ ......++|.++.|. |+++|-++.+| |++||+.+.+.+..++.+...++. ..--..+
T Consensus 152 ~~v-~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~---------------e~fpphl 211 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP---------------ELFPPHL 211 (846)
T ss_pred cce-eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc---------------ccCCCce
Confidence 000 112346789999996 46888777655 799999998887776544322111 0013457
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECC
Q 004290 286 TFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 286 ~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
.|.++.+ |+.|-. .+|+|..++
T Consensus 212 ~W~~~~~-LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 212 HWQDEDR-LVIGWG-DSVKICSIK 233 (846)
T ss_pred EecCCCe-EEEecC-CeEEEEEEe
Confidence 7887765 454544 477888777
No 301
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=0.00021 Score=74.23 Aligned_cols=254 Identities=11% Similarity=0.087 Sum_probs=137.8
Q ss_pred ceEEEEeCCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEcc--CCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290 52 CVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~-----------D~~v~iWd~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
.|.-+.|||+.++|+|-+. -..++|||+.+|...+.|.. +....-.-+.|+.+ +.++|.-.. ..
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-ce
Confidence 4889999999999998764 25799999999998888732 11122235789998 788887766 56
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC--C---CcEEEEECCCCCCCC---------
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--D---GTLRQHDFRQGSSCP--------- 184 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~--d---g~i~iwd~~~~~~~~--------- 184 (763)
|.||+..... ++..-.--...|....|+| .+++||--.. + ..+.+-.+-+.+.+.
T Consensus 328 isIyEtpsf~----------lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD 396 (698)
T KOG2314|consen 328 ISIYETPSFM----------LLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD 396 (698)
T ss_pred EEEEecCcee----------eecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeec
Confidence 8899877421 1111111234577778888 4455543221 0 122233332222110
Q ss_pred --CCCCCCcccceEEEecCCCce-------eeccCC---------CCCccceEEEEEeCCCCcEEEEEeC---CCcEEEE
Q 004290 185 --PAGSSHQECRNILLDLRCGAK-------RSLADP---------PKQTLSLKSCDISSTRPHLLLVGGS---DAFARLY 243 (763)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------~~~~~~v~~i~~~p~~~~~l~sgs~---Dg~i~iw 243 (763)
...+......+...+-++... ..+... -.....|...+|-|. |+.|++-+. ..++.+|
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPH-GDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccC-CCeEEEEEccccccceeEE
Confidence 000000111111111111000 001111 112345778899997 566665543 3568888
Q ss_pred eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCCccceEeec
Q 004290 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTV 320 (763)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~iwd~~~~~~~~~~~~~ 320 (763)
-+.+.... +..+..+ .....+.|.|+|.|++++++.- .|.+.++|+........-...
T Consensus 476 ~~e~~~~~---------~~lVk~~----------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e 536 (698)
T KOG2314|consen 476 AVETNIKK---------PSLVKEL----------DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE 536 (698)
T ss_pred EeecCCCc---------hhhhhhh----------cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc
Confidence 87742110 0111111 1114788999999999888754 789999999863222222222
Q ss_pred CCCCeeeeeccCCCCcccC
Q 004290 321 GDASKIMSFTPTLNGLELQ 339 (763)
Q Consensus 321 ~~~~~~~~~~p~~~~~~~~ 339 (763)
....+.+.|.|.+..+...
T Consensus 537 h~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 537 HFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred ccccccceECCCCCEEEEe
Confidence 2334556677776655433
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.9e-05 Score=78.45 Aligned_cols=220 Identities=12% Similarity=0.079 Sum_probs=142.3
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--Ce-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcEEEEEC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL 124 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I~iwd~ 124 (763)
|.+.|+.+.-+ -.+++.+++.||.++.|.-.. +. .+..+ ..|...|.+++.+.+ +.++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence 77777776644 457899999999999998643 32 23333 678899999999998 789999777 999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
...+-.. ...+.-..+.+. ...+|.+. .+.++.-.++.|.++|-+...+.
T Consensus 84 En~Dmin--------miKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q------------------- 135 (558)
T KOG0882|consen 84 ENFDMIN--------MIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ------------------- 135 (558)
T ss_pred eccchhh--------hcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------
Confidence 8633110 111111222222 22233221 23334446789999997655421
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcc-cCCCCCCCCcccccccccccCCCCCcc
Q 004290 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
.......|..+|..+.++|. ++.+++....|.|.-|.... .+.... +........ .+........
T Consensus 136 ----~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT--------dLy~f~K~Kt 202 (558)
T KOG0882|consen 136 ----DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET--------DLYGFPKAKT 202 (558)
T ss_pred ----cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccc--------hhhccccccc
Confidence 12222347788999999997 68899998899999998873 221111 110000000 0100111122
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004290 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~ 313 (763)
..+++.|+|+|..+.+-+.|..|++++..+++.
T Consensus 203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred CccceEEccccCcccccCcccEEEEEEeccchh
Confidence 478999999999999999999999999999763
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.13 E-value=0.00012 Score=86.10 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=134.0
Q ss_pred ccCceEEEEeCCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcE
Q 004290 49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV 119 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~---D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I 119 (763)
+.+.-..++|..||+++|+.+. . ..+|||+-+ |....+- ..-.+--.+++|-|. |++||+... ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence 4556678999999999998764 2 579999976 5544433 333344467899999 799998775 3446
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
.+|.-+-... .+....+......|..|.|++ ++.+|+....|. |.+|-..+.. |-
T Consensus 284 vFfErNGLrh-------geF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY 338 (928)
T PF04762_consen 284 VFFERNGLRH-------GEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY 338 (928)
T ss_pred EEEecCCcEe-------eeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence 6665442110 011112223556799999999 668888776554 9999876643 11
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC----CCCCC------------------cccCCC
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPL------------------TSCQKR 257 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~----~~~~~------------------~~~~~~ 257 (763)
++ ..+... ....+..+.|+|.++..|.+.+.+|.+..++.. .+... +.+...
T Consensus 339 LK----qei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 339 LK----QEIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EE----EEEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 11 011111 112234488999888888888887777655443 11100 000000
Q ss_pred C-CCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004290 258 M-SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 258 ~-~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .||.|...+ .. ..+|..++|++++..+++-..||.|.+|.....
T Consensus 413 ~VPPPMs~~~l--------~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 413 VVPPPMSSYEL--------EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCchHhceEE--------cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 0 111111111 11 126999999999988999999999999986653
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.11 E-value=4.9e-05 Score=83.32 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=134.2
Q ss_pred CCCCCchhhhhhccccCCC----cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC
Q 004290 5 PFHDGSIYDMLDTRHTDTR----PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS 80 (763)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~ 80 (763)
.|+-.....+...-+++.. +..+..+--.+ ..+.+..+...-..+.|+-++ .++++|.+|...|+|.+-|..
T Consensus 130 ~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~D--l~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~ 205 (1118)
T KOG1275|consen 130 DFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHID--LNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN 205 (1118)
T ss_pred cccCCCHHHHHHHhccCCcceeecchhhheeeee--cccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCC
Confidence 3555556666655555443 22333333333 344444444443444566665 458999999999999999999
Q ss_pred CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee
Q 004290 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 151 (763)
Q Consensus 81 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 151 (763)
+-+.++++ ..|++.|.++... |++|++|+. |..|+|||++... .+..+.-+.++ .
T Consensus 206 s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr----------al~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 206 SFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR----------ALSPIQFPYGP-Q 269 (1118)
T ss_pred cCceeeee-eccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhh----------ccCCcccccCc-h
Confidence 99999999 7999999887765 789999985 5668999999732 22333323333 4
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE
Q 004290 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 231 (763)
Q Consensus 152 ~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l 231 (763)
-+.|+|.=...++.++..|...+-|..+-.... ....+ .......+.++++++. ++.+
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~---------~~~~~------------v~p~~s~i~~fDiSsn-~~al 327 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP---------AGVKM------------VNPNGSGISAFDISSN-GDAL 327 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCc---------cceeE------------EccCCCcceeEEecCC-CceE
Confidence 567888777788899999999999944332210 00000 0111234889999996 7999
Q ss_pred EEEeCCCcEEEEeCC
Q 004290 232 LVGGSDAFARLYDRR 246 (763)
Q Consensus 232 ~sgs~Dg~i~iwd~~ 246 (763)
|.|..+|.|.+|--+
T Consensus 328 afgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 328 AFGDHEGHVNLWADR 342 (1118)
T ss_pred EEecccCcEeeecCC
Confidence 999999999999744
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.07 E-value=0.00093 Score=66.89 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=117.1
Q ss_pred eEEEEeC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc---C-CCCceEEEEEeeCCCCcEEEEEeCC--------CcE
Q 004290 53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV 119 (763)
Q Consensus 53 V~~l~fs-p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~---~-h~~~V~~v~~~p~~~~~~l~s~s~d--------g~I 119 (763)
...+++. +++.++++ ... .+.++|+.+++....+.. . .....+.+++.|+ |++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 6778887 66655554 444 456669998865433311 1 3456789999999 7888876654 446
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
..++.. +. ...+.......+.|+|+|++..++++-+..+.|..+++...... ......+.+
T Consensus 118 ~~~~~~-~~-----------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~ 178 (246)
T PF08450_consen 118 YRIDPD-GK-----------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID 178 (246)
T ss_dssp EEEETT-SE-----------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred EEECCC-Ce-----------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence 666665 11 23333345668899999965556667788889999998754310 001122222
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
+. ........++++.+ +++.++....+.|.++|.+ ++.+..+..+ ..
T Consensus 179 ~~-----------~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-------------------~~- 225 (246)
T PF08450_consen 179 FP-----------GGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP-------------------VP- 225 (246)
T ss_dssp -S-----------SSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S-------------------SS-
T ss_pred cC-----------CCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-------------------CC-
Confidence 22 22235778999996 6788887788999999988 6544333111 01
Q ss_pred cceeEEEEc-CCCCEEEEEe
Q 004290 280 LHLTHVTFS-PNGEEVLLSY 298 (763)
Q Consensus 280 ~~i~~v~~s-pdg~~l~~~s 298 (763)
.+++++|. ++.+.|++.+
T Consensus 226 -~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 -RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SEEEEEEESTTSSEEEEEE
T ss_pred -CEEEEEEECCCCCEEEEEe
Confidence 48999994 7777776654
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.06 E-value=0.0014 Score=65.54 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=130.1
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 55 ~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 133 (763)
+..|.+ ++.++++--..+.|..|+..+++..... .. . ...+.+... +..|+.+... .+.++|+.++.-
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~--~-~~G~~~~~~--~g~l~v~~~~-~~~~~d~~~g~~---- 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LP--G-PNGMAFDRP--DGRLYVADSG-GIAVVDPDTGKV---- 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SS--S-EEEEEEECT--TSEEEEEETT-CEEEEETTTTEE----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cC--C-CceEEEEcc--CCEEEEEEcC-ceEEEecCCCcE----
Confidence 577888 7888888888899999999988654322 11 1 778888843 2455555554 456668876431
Q ss_pred CCCCCCceeee--c-ccCceeEEEEecCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290 134 DNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 134 ~~~~~~~~~~~--~-h~~~v~~l~~sp~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
+.+.... . .....+.+++.| ++++.++.... |.|..++.. ++. ..+.
T Consensus 73 ----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~---- 130 (246)
T PF08450_consen 73 ----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVA---- 130 (246)
T ss_dssp ----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEE----
T ss_pred ----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEe----
Confidence 1222221 1 345688999999 55666665543 456667665 320 1111
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC-CcccCCCCCCCCcccccccccccCCCCCccc
Q 004290 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
......+.|+|+|++..++++-+..+.|..|++..... +.. ...+ .++ .+.. ..
T Consensus 131 ----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------~~~~--~~~--~~~~-g~ 185 (246)
T PF08450_consen 131 ----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN----------RRVF--IDF--PGGP-GY 185 (246)
T ss_dssp ----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE----------EEEE--EE---SSSS-CE
T ss_pred ----------cCcccccceEECCcchheeecccccceeEEEeccccccceee----------eeeE--EEc--CCCC-cC
Confidence 01234689999998433455667788899999864321 110 0000 000 0011 13
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004290 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 330 (763)
.-.+++..+|+..++....+.|.+++.. ++...........+..++|.
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 7789999999988887889999999988 45444444444567777773
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.00061 Score=73.37 Aligned_cols=202 Identities=10% Similarity=0.077 Sum_probs=115.4
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeeccc
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~ 147 (763)
..|.+-|..... .+.+..+ +.+..-.|+|+ ++ .++..+. +..|.++|+.++. ...+....
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~-----------~~~lt~~~ 232 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGK-----------KEKIASSQ 232 (419)
T ss_pred ceEEEECCCCCc-eeEEccC--CCeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCc-----------EEEEecCC
Confidence 456666665443 3334233 37789999999 55 3554443 3558888887643 22233345
Q ss_pred CceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC
Q 004290 148 RRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (763)
Q Consensus 148 ~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p 225 (763)
+......|+|++..++++.+.++ .|.++|+..++. ..+...+. ......|+|
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-----------------------~~LT~~~~---~d~~p~~SP 286 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-----------------------TQITNYPG---IDVNGNFVE 286 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-----------------------EEcccCCC---ccCccEECC
Confidence 55667789996656666665554 577777766541 11111111 122347999
Q ss_pred CCCcEEEEEeCCC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---
Q 004290 226 TRPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (763)
Q Consensus 226 ~~~~~l~sgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--- 300 (763)
++..++++....+ .|.++|+.+++..... ..+. ....|+|||++|+..+..
T Consensus 287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-------------------~~g~-----~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-------------------FHGK-----NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEeCc-------------------cCCC-----cCceECCCCCEEEEEEcCCCc
Confidence 8444444443444 4667777665421100 0111 123799999998877653
Q ss_pred ------CeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCC
Q 004290 301 ------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (763)
Q Consensus 301 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 341 (763)
..|++.|+.++....... +.......|+|+++.+.+...
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred ccCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEEc
Confidence 378888988865332222 223345789998887766543
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00036 Score=75.96 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=109.8
Q ss_pred eeccccCceEEEEeCC-------------CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC---CCc
Q 004290 45 ELEGHQGCVNAISWNS-------------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET---SDE 108 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp-------------~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~---~~~ 108 (763)
.|..|.+.|.-..+.- +|++++|||.||+|.|-.+.+.+...++ ....++.+++++|+- ..+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence 3455766666555544 3999999999999999999888877766 345789999999971 246
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 109 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 188 (763)
.+++|+.-| +.++.-+-.... . ...+..-.++|.++.|. +++++=++.+| |++||+.+.+.+..+..
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk-------~-~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNK-------D-SVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred heeecCcce-EEEehhhhhcCc-------c-ceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 899999888 766654321110 1 11355667899999995 47887666554 99999988775432221
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.+.. +........+.|.+. ..|+.|- ..+|+|..++.
T Consensus 198 p~~~-------------------~R~e~fpphl~W~~~--~~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 198 PSQS-------------------VRPELFPPHLHWQDE--DRLVIGW-GDSVKICSIKK 234 (846)
T ss_pred CCCC-------------------CCcccCCCceEecCC--CeEEEec-CCeEEEEEEec
Confidence 1100 001122345778775 4666664 45788888873
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=6.1e-05 Score=80.19 Aligned_cols=170 Identities=13% Similarity=0.112 Sum_probs=122.2
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC-----CCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004290 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL-----DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~ 166 (763)
......|++|+.+ ..++++|+.||.+++..+.+...... .......-+++.+|...|.-+.|+. ..+.+.|.
T Consensus 13 nnvkL~c~~WNke--~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKE--SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS 89 (1189)
T ss_pred CCceEEEEEEccc--CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence 4456789999998 58999999999999999876322110 1111223467889999999999987 55778788
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
..+|.|.+|-+-.++-+. -.........|.+++|+.+ |..++..-.||.|.+=.+.
T Consensus 90 Dt~GlIiVWmlykgsW~E-----------------------EMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCE-----------------------EMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred CCCceEEEEeeecccHHH-----------------------HHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeec
Confidence 899999999998775320 0011123567899999997 6788888888888765554
Q ss_pred CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
...... . ...+...+.+.|++|.+.++.+-.+|.+.++|...
T Consensus 146 GNRIwg-----------------K-----eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 146 GNRIWG-----------------K-----ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cceecc-----------------h-----hcchheccceeecccHHHHHhhhcCCcEEEecccc
Confidence 322110 0 01111366789999999999999999999999876
No 310
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=7e-06 Score=86.39 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=113.9
Q ss_pred ccccCceEEEEeCC-CCCEEEEEe----CCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004290 47 EGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 47 ~gH~~~V~~l~fsp-~g~~Lasgs----~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
.+|...+++++|++ |.+.||.|- .|..+.|||+.++ +....|..+......+++|..+ .+++++|...+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr 176 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSR 176 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccccc
Confidence 46778899999998 567788773 3667999999876 2222332223445668889876 68889999899
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE-CCCCCCCCCCCCCCcccceE
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~ 196 (763)
.++++|++... .....-.+..+..+...|-.+.++++-. ||.|-+|| .+.-+.....
T Consensus 177 ~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~---------- 234 (783)
T KOG1008|consen 177 SVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI---------- 234 (783)
T ss_pred hhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH----------
Confidence 99999999522 2222223445677888887778886654 99999999 4444322100
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCC
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRM 247 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~ 247 (763)
.+.........+..++|.|....++++...| ++|++||++.
T Consensus 235 ----------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 235 ----------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ----------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 0111112233688999999877778887765 7899999874
No 311
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.94 E-value=0.0025 Score=75.19 Aligned_cols=264 Identities=15% Similarity=0.184 Sum_probs=146.1
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEc---cCCCCceEEEE
Q 004290 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIE---TGHSANVFCTK 100 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~~~~~~~~~---~~h~~~V~~v~ 100 (763)
.|.+++|+-. +.+..+-+.-.+-=.+++|.|.|++||+... ...|..|.- +|-.-..|. ......|..+.
T Consensus 236 ~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 236 RRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred eeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence 4677777622 2222222222222346899999999998764 345666764 443333331 23457899999
Q ss_pred EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
|+++ +..|+..-.|. |.+|-..+.... ..+.+. .....+..+.|+|..+..|...+.+|.+..+++.-
T Consensus 312 Wn~d--s~iLAv~~~~~-vqLWt~~NYHWY--------LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 312 WNSD--SEILAVWLEDR-VQLWTRSNYHWY--------LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred ECCC--CCEEEEEecCC-ceEEEeeCCEEE--------EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 9999 68999877665 999998863321 122222 12334556999998888888888878876654432
Q ss_pred CCCCCCCCCCCcccceEEEec--------CCCcee-eccC-CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 180 GSSCPPAGSSHQECRNILLDL--------RCGAKR-SLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~-~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
.................++|. +...+. ++.. .-.-...|.+++|+++ +..+++-..||.|.+|......
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEecCCC
Confidence 211111111111222222221 111100 0000 0112457899999997 4569999999999999866543
Q ss_pred CCcccCCCCCCCCcccccccc--cccCCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004290 250 PLTSCQKRMSPPPCVNYFCPM--HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~ 311 (763)
..... .+.....+... ...........+..++|..+...++....+ ..+.++++...
T Consensus 460 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 460 MWSVK-----PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred ccccc-----CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 21100 00000111000 000001112248889998888776666654 68888888543
No 312
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.92 E-value=3e-05 Score=51.43 Aligned_cols=39 Identities=36% Similarity=0.553 Sum_probs=36.5
Q ss_pred CcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEc
Q 004290 659 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 697 (763)
Q Consensus 659 g~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~ 697 (763)
++++..+.+|...|++++|+|.+.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567888999999999999999999999999999999996
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.89 E-value=0.0045 Score=61.74 Aligned_cols=217 Identities=12% Similarity=0.146 Sum_probs=133.7
Q ss_pred eEEEEeCC-CCCEEEEEeCCCc-EEEEeCCCCeEEEEEccCCCCceE--EEEEeeCCCCcEEEEEeC-----CCcEEEEE
Q 004290 53 VNAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGAG-----DAEVRLFN 123 (763)
Q Consensus 53 V~~l~fsp-~g~~Lasgs~D~~-v~iWd~~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~l~s~s~-----dg~I~iwd 123 (763)
...++.+| .+..+|.+-.-|+ +.+||+.+++....+. ...+.-+ ...|+|+ |++|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEE
Confidence 34678888 5566777766655 6799999999887773 3222222 4679999 788887543 57899999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-------CCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-------DGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
.... ...+..+..|.-....|.+.|++ ..|+.+.. .|..++ ++.+. .....
T Consensus 84 ~~~~---------~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kL-Nl~tM-----------~psL~ 141 (305)
T PF07433_consen 84 AARG---------YRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKL-NLDTM-----------QPSLV 141 (305)
T ss_pred CcCC---------cEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceec-Chhhc-----------CCceE
Confidence 9931 24467788888888899999954 45544421 122221 22222 23345
Q ss_pred EEecCCCceeeccCC--CCCccceEEEEEeCCCCcEEEEEeC-CC-------cEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004290 197 LLDLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGS-DA-------FARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~~l~sgs~-Dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
+.+..++........ ..|..+|..+++.++ +. ++.+.. .| .|-+++.. +.+..+..
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~-V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~---------- 207 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GT-VAFAMQYQGDPGDAPPLVALHRRG--GALRLLPA---------- 207 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCC-Cc-EEEEEecCCCCCccCCeEEEEcCC--CcceeccC----------
Confidence 566667766655555 447788999999997 43 444432 22 12222222 11111100
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~ 312 (763)
.........+ .|-+|++++++.++++++- .+.+.+||..++.
T Consensus 208 ---p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 208 ---PEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred ---ChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 0000011222 4999999999998877776 8899999999965
No 314
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.86 E-value=0.0015 Score=64.19 Aligned_cols=228 Identities=14% Similarity=0.142 Sum_probs=117.8
Q ss_pred ceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004290 43 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
.+.|.+-...+..|+|+|+.+ ++|+....+.|...+. +|+.++.+...-.+..-.|++.-+ +.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 356667667799999999755 5566677788888886 477787774333467889999876 566666656899999
Q ss_pred EECCCCCCCCCCCCCCCCceee-----ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 122 FNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
+++........ ......+ ..+...+-.|+|.|.+..++ .+-+.....++.+...... ....
T Consensus 91 ~~~~~~~~~~~----~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~---------~~~~ 156 (248)
T PF06977_consen 91 FTIDDDTTSLD----RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG---------FDLF 156 (248)
T ss_dssp EEE----TT------EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S---------S--E
T ss_pred EEEeccccccc----hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc---------ccee
Confidence 99854221110 0001111 13445688999999655555 5566666677766541100 0000
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
..+. ..+.........+.+++++|..+++++.+.....|.++| ..++.+..+.-.. ..+-..
T Consensus 157 ~~~~-----~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~----------g~~gl~-- 218 (248)
T PF06977_consen 157 VSDD-----QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR----------GFHGLS-- 218 (248)
T ss_dssp EEE------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST----------TGGG-S--
T ss_pred eccc-----cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC----------cccCcc--
Confidence 0000 000101122345789999998888899988999999999 5555432221000 000000
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iw 306 (763)
..-.+--.|+|.++|+ |+..+.-+..+.|
T Consensus 219 ~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 219 KDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp S---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred cccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 1111477899999997 5555566666665
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.79 E-value=0.0017 Score=68.95 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=89.6
Q ss_pred hccccceeeccccCceEEEEeCC-CCCEEEEE----eCCCcE----EEEeCCCCe--EEEEEccCCCCceEEEEEeeCCC
Q 004290 38 RRLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTHI----NVWSYSSRK--LLHSIETGHSANVFCTKFVPETS 106 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasg----s~D~~v----~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~ 106 (763)
.+++++-.++--.++ .++.||- +...+.|. +.+|.+ .+|++...+ .+..........|.|++++|+
T Consensus 194 ~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~-- 270 (545)
T PF11768_consen 194 GKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS-- 270 (545)
T ss_pred CcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc--
Confidence 345555555543343 5678876 34444433 334443 467766543 222222367789999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
...|+.|+.||.|.+||...+ +..+....-.++.++|+| ++.+|++|+..|.+.+||+.-...
T Consensus 271 E~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 271 EDKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCcc
Confidence 799999999999999999863 233334556788999999 678999999999999999876643
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=1.5e-05 Score=83.92 Aligned_cols=211 Identities=11% Similarity=0.154 Sum_probs=134.0
Q ss_pred ccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeEE-EEEccCCCCceEEEEEeeCCCCcEEEEEe----CCCcEEE
Q 004290 49 HQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRL 121 (763)
Q Consensus 49 H~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----~dg~I~i 121 (763)
....+.|++++- +..+|+.|..+|.|-+-.+....-. ..+..+|..++++++|++-. ...||.|- .|..+.|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccc
Confidence 345688888765 4468999999999999887654322 44446888999999999862 45666663 2667999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
||+.+.-.... ..+... .+-.....+++|-. +..++.+|...+.+.++|+|..... +.
T Consensus 134 wdi~s~ltvPk----e~~~fs-~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~---------~~------- 191 (783)
T KOG1008|consen 134 WDINSLLTVPK----ESPLFS-SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS---------VS------- 191 (783)
T ss_pred eecccccCCCc----cccccc-cccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh---------hh-------
Confidence 99987421110 011111 12344566888884 6678889988899999999954311 00
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEe-CCCCCC-CcccCCCCCCCCcccccccccccCCCCCc
Q 004290 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
.-.+..+..+...|-.++++++.. |+.|-+|| .++.+. +..+.... . ...
T Consensus 192 ----------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~----------------N-~~~ 243 (783)
T KOG1008|consen 192 ----------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE----------------N-KKP 243 (783)
T ss_pred ----------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCC----------------C-Ccc
Confidence 001234556777886577887766 99999999 444331 11110000 0 001
Q ss_pred cceeEEEEcCCCC-EEEEEeC-CCeEEEEECCC
Q 004290 280 LHLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 280 ~~i~~v~~spdg~-~l~~~s~-d~~i~iwd~~~ 310 (763)
..+..++|+|... .|++.+. .++|+++++..
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 1489999999543 3444454 67999999865
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.77 E-value=0.069 Score=57.62 Aligned_cols=202 Identities=11% Similarity=0.034 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE------EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~------v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 134 (763)
.+..++.++.++.|.-+|..+|+.+-.........+.. +.-.|--.+..++.++.++.+..+|..+++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~----- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV----- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence 35677788888999999999999887763222110000 0001100145677788899999999987543
Q ss_pred CCCCCceeeecccCceeE-EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004290 135 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (763)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (763)
+...... +.+.+ .... + ..++.+..++.|..+|..+++. +|........ + ....
T Consensus 143 -----~W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~--------------~W~~~~~~~~-~-~~~~ 197 (394)
T PRK11138 143 -----AWQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAV--------------KWTVNLDVPS-L-TLRG 197 (394)
T ss_pred -----cccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCE--------------eeeecCCCCc-c-cccC
Confidence 2222211 12221 1221 3 3555677889999999998863 3332221000 0 0000
Q ss_pred CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC--CC
Q 004290 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG 291 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp--dg 291 (763)
...++ .. ...++.++.++.+..+|..+++.+.......... +........+..+| .+
T Consensus 198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~--------------~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG--------------ATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCC--------------ccchhcccccCCCcEEEC
Confidence 01111 11 1357778889999999999887654432110000 00000011111122 24
Q ss_pred CEEEEEeCCCeEEEEECCCCCc
Q 004290 292 EEVLLSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~~~~ 313 (763)
..|+.++.++.++.+|..+++.
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCE
Confidence 5677788899999999998753
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0037 Score=68.89 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=128.1
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc-eEEEEEeeCCCCcEEEEEeCCCc-----EEEEECC
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLS 125 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~l~s~s~dg~-----I~iwd~~ 125 (763)
.|.| |++.+..+|.|+.+|.|.+.+- .-+.++.+ +.+... |..+..... ..+|++.+.|+. |+||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEeccc
Confidence 5555 6688999999999998877763 23344666 566655 444433333 368888887765 8999998
Q ss_pred CCCCCCCCCCCCCCc--eeeec-----ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004290 126 RFSGRGLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
..++... ..++ ..+.. ...++.+++.+. +-..+|.|-.+|.|..+-=.-..-. ..
T Consensus 101 k~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDr---------gs---- 162 (933)
T KOG2114|consen 101 KVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDR---------GS---- 162 (933)
T ss_pred ccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhcc---------cc----
Confidence 7532210 1222 11112 345688899987 4578889999999988732111000 00
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
..........+|+.+++..++...++++. -..|.+|.+....+... . ..+.
T Consensus 163 --------r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~------------~--------ld~~ 213 (933)
T KOG2114|consen 163 --------RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLK------------V--------LDNN 213 (933)
T ss_pred --------ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCccee------------e--------eccC
Confidence 11111234678999999987443233333 35788888873321100 0 1233
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC
Q 004290 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~ 322 (763)
+..++|..|++....++++ .+..+++|+.... .+...+..++
T Consensus 214 G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~-~~cfaf~~g~ 255 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICA-GSEFLYFYDSDGR-GPCFAFEVGE 255 (933)
T ss_pred CccceeeecCCCCccEEEe-cCceEEEEcCCCc-ceeeeecCCC
Confidence 4468888888765544444 3567899988863 3444444333
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.69 E-value=0.0042 Score=61.91 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=94.3
Q ss_pred EEeCCCCCEEEEEeC-----CCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-------CCc----
Q 004290 56 ISWNSKGSLLISGSD-----DTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAE---- 118 (763)
Q Consensus 56 l~fsp~g~~Lasgs~-----D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-------dg~---- 118 (763)
-.||+||++|.+.=. .|.|-|||.. +.+.+..+ ..|.-....+.+.|+ +..|+.+.. .|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecC
Confidence 569999999988633 4789999999 66778888 667666788999999 667776531 122
Q ss_pred -------EEEEECCCCCCCCCCCCCCCCce--ee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004290 119 -------VRLFNLSRFSGRGLDDNAITPSA--LY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 119 -------I~iwd~~~~~~~~~~~~~~~~~~--~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 187 (763)
+.+.|..++ +.+. .+ .-|..+|..|++.+ ++..++..-..| ......
T Consensus 133 l~tM~psL~~ld~~sG----------~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg-------~~~~~~---- 190 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSG----------ALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQG-------DPGDAP---- 190 (305)
T ss_pred hhhcCCceEEEecCCC----------ceeeeeecCccccccceeeEEecC-CCcEEEEEecCC-------CCCccC----
Confidence 222222221 1122 23 33667888888887 334443322222 111100
Q ss_pred CCCcccceEEEecCCCceeeccCC-----CCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCc
Q 004290 188 SSHQECRNILLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
-.+.-.+.+........ ......+-+|+++++ +.++ +++-.-+.+.+||..++..+.
T Consensus 191 -------PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~-g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 191 -------PLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRD-GRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred -------CeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCC-CCEEEEECCCCCEEEEEECCCCCEee
Confidence 01111111110111111 123456889999997 4555 555567889999999987554
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.65 E-value=0.00022 Score=75.51 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=63.6
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
.....|.|++++|+.+.|+.|+.||.|++||...+..... ...-.++.++|+|+ |.++++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence 3677899999999999999999999999999877643322 34456889999999 79999999999999999984
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.62 E-value=0.035 Score=55.08 Aligned_cols=146 Identities=21% Similarity=0.206 Sum_probs=85.9
Q ss_pred CCCcEEEEeCCCCeEEEEEccCC-CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 70 DDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 70 ~D~~v~iWd~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
.+++|..||..+|+.+.....+. .....+.. .+. +..+++++.++.|..||..+++ .+..+.. .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~--~~~v~~~~~~~~l~~~d~~tG~----------~~W~~~~-~~ 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPD--GGRVYVASGDGNLYALDAKTGK----------VLWRFDL-PG 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEE--TTEEEEEETTSEEEEEETTTSE----------EEEEEEC-SS
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE-EEe--CCEEEEEcCCCEEEEEECCCCC----------EEEEeec-cc
Confidence 36899999999999988873221 12222222 323 4677777899999999998743 2333332 22
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec-CCCceeeccCCCCCccceEEEEEeCCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
.+....... + ..++.++.++.|+.+|..+++. +|.. .... ............+.
T Consensus 67 ~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~--------------~W~~~~~~~------~~~~~~~~~~~~~~--- 121 (238)
T PF13360_consen 67 PISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKV--------------LWSIYLTSS------PPAGVRSSSSPAVD--- 121 (238)
T ss_dssp CGGSGEEEE-T-TEEEEEETTSEEEEEETTTSCE--------------EEEEEE-SS------CTCSTB--SEEEEE---
T ss_pred cccceeeec-c-cccccccceeeeEecccCCcce--------------eeeeccccc------cccccccccCceEe---
Confidence 221111222 3 4555666888999999988862 3331 1110 00001111222332
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290 228 PHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
++.++++..++.|..+|+++++.+...
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 468888888999999999999865544
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.55 E-value=0.0055 Score=60.89 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=110.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
++..+++++.++.|..||..+|+.+..+.. ...+...... . +..++.++.++.|..+|..+++ .+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG~----------~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-D--GGRVYVGTSDGSLYALDAKTGK----------VL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-E--TTEEEEEETTSEEEEEETTTSC----------EE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-c--ccccccccceeeeEecccCCcc----------ee
Confidence 566777788999999999999998887732 2222111222 2 4567777788899999988743 23
Q ss_pred eee-eccc---CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290 141 ALY-QCHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (763)
Q Consensus 141 ~~~-~~h~---~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (763)
... .... .....+.... .+..++.+..++.|..+|+++++. +|........ ....-....
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~--------------~w~~~~~~~~-~~~~~~~~~ 163 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL--------------LWKYPVGEPR-GSSPISSFS 163 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE--------------EEEEESSTT--SS--EEEET
T ss_pred eeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE--------------EEEeecCCCC-CCcceeeec
Confidence 331 2111 1112222222 246777788899999999999863 2322111000 000000001
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290 217 SLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (763)
Q Consensus 217 ~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~ 295 (763)
.+..-....+ + .++.++.++. +.+ |+.+++.+... ... .+..+ ...++..|+
T Consensus 164 ~~~~~~~~~~-~-~v~~~~~~g~~~~~-d~~tg~~~w~~----------------------~~~-~~~~~-~~~~~~~l~ 216 (238)
T PF13360_consen 164 DINGSPVISD-G-RVYVSSGDGRVVAV-DLATGEKLWSK----------------------PIS-GIYSL-PSVDGGTLY 216 (238)
T ss_dssp TEEEEEECCT-T-EEEEECCTSSEEEE-ETTTTEEEEEE----------------------CSS--ECEC-EECCCTEEE
T ss_pred ccccceEEEC-C-EEEEEcCCCeEEEE-ECCCCCEEEEe----------------------cCC-CccCC-ceeeCCEEE
Confidence 1122222222 3 6777777775 555 99887532110 000 12221 346778888
Q ss_pred EEeCCCeEEEEECCCCCc
Q 004290 296 LSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 296 ~~s~d~~i~iwd~~~~~~ 313 (763)
.++.++.|.+||+.+++.
T Consensus 217 ~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 217 VTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEETTTEEEEEETTTTEE
T ss_pred EEeCCCEEEEEECCCCCE
Confidence 888999999999999753
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.46 E-value=0.00024 Score=46.79 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=34.7
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 004290 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd 78 (763)
+++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.45 E-value=0.023 Score=65.34 Aligned_cols=212 Identities=9% Similarity=0.045 Sum_probs=128.2
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC--CC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR--FS 128 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~--~~ 128 (763)
+.|.++.|..++.-++.+..+|.|.+-|.++...... ..-...|.+++|+|+ +..++.....+++.+-+-.- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccchh
Confidence 6899999999999999999999999999887643221 234577999999999 68888888878776644310 00
Q ss_pred CCCC-----------CCCCCCCceeeec---------------------ccCceeEEEEecCCCCEEEEEe----CC-Cc
Q 004290 129 GRGL-----------DDNAITPSALYQC---------------------HTRRVKKLAVEVGNPHVVWSAS----ED-GT 171 (763)
Q Consensus 129 ~~~~-----------~~~~~~~~~~~~~---------------------h~~~v~~l~~sp~~~~~l~s~s----~d-g~ 171 (763)
.+.+ ...=.+....|.+ ..+.=++|.|-- ++.+|++.. .+ +.
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence 0000 0000000000110 112234588876 667887732 23 79
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe---CCCcEEEEeCCCC
Q 004290 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRML 248 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs---~Dg~i~iwd~~~~ 248 (763)
|++||-. +..-. .. ....+-=.+++|-|. |.++++-. +|+.|.+|.....
T Consensus 224 irV~drE-g~Lns-----------------------~s--e~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 224 IRVYDRE-GALNS-----------------------TS--EPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred EEEeccc-chhhc-----------------------cc--CcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCc
Confidence 9999976 32110 00 001122357889996 67777753 5667888876533
Q ss_pred CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE---EeCCCeEEEEECCCCC
Q 004290 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHAG 312 (763)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~---~s~d~~i~iwd~~~~~ 312 (763)
. ...+..+ .......|..++|..++..|++ ......|++|-+.+-.
T Consensus 277 ~-hg~f~l~-----------------~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 277 R-HGEFVLP-----------------FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred c-ccccccC-----------------CcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 2 1111100 0011113899999999998887 4445669999887743
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0062 Score=66.78 Aligned_cols=110 Identities=10% Similarity=0.180 Sum_probs=83.2
Q ss_pred EEEEeCCCCCEEEEEeC----CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 54 NAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 54 ~~l~fsp~g~~Lasgs~----D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
+-.+|+|...++|.++- .|.|.||- ++|++.... ...-.+++++|+|. .-.|+.|-.-|.+.+|...+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e- 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTE- 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCce-
Confidence 34679999999998864 47788884 566543332 12234578999999 5778888889999999988632
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
.-.....|..+|..+.|++ +|..++|+..-|.|.+|....
T Consensus 93 ---------~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 93 ---------THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 2333457999999999999 668888999999999997653
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0069 Score=65.49 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=90.9
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
|...|.--++...+++|+.|+.-|.|.+|+-.+++....-..+-.+.+..+..+++ ..++|.|+..|.|.++-++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence 44556666677889999999999999999987776543332344556667777887 6888889999999999888632
Q ss_pred CCCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 129 GRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 129 ~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
.... ..+.. -+.|...|++++|++ ++..+++|...|+|..--+..
T Consensus 110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 1111 11111 134889999999999 678899999999999887776
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.0003 Score=76.95 Aligned_cols=186 Identities=20% Similarity=0.216 Sum_probs=119.5
Q ss_pred EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004290 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 85 ~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 164 (763)
.+.| ..|+...+|++|+-. .+.|+.|+..|.|+++++.++.. .....+|...|+.+.-+.++..+|.
T Consensus 1094 w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~~----------e~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1094 WRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGSM----------EESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred chhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCccc----------cccccccccccccccccCCcceeee
Confidence 4455 578888999999998 69999999999999999998542 4567899999999998885555555
Q ss_pred EEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc-cceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004290 165 SASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 165 s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
+++... -..+|++...-.. .|. ..-.++.|+.. ...-+.|+.-....+
T Consensus 1161 sss~S~PlsaLW~~~s~~~~-----------------------------~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~~ 1210 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGP-----------------------------RHSFDEDKAVKFSNS-LQFRALGTEADDALL 1210 (1516)
T ss_pred eccccCchHHHhccccccCc-----------------------------cccccccceeehhhh-HHHHHhcccccceEE
Confidence 554444 5678988763211 011 12245667664 334455666678899
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC
Q 004290 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~ 322 (763)
||+.++.++.++..+.. . . +..-+.+.|+|+..+++ .|| .+||++... ....+..-.
T Consensus 1211 YDvqT~~~l~tylt~~~------------~----~-~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft 1267 (1516)
T KOG1832|consen 1211 YDVQTCSPLQTYLTDTV------------T----S-SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPE-AIHRFDQFT 1267 (1516)
T ss_pred EecccCcHHHHhcCcch------------h----h-hhhccccccCCCcceEe---eCc--eeeeeccHH-HHhhhhhhe
Confidence 99999886655322111 0 0 11246788999988765 344 589998853 222222211
Q ss_pred CCeeeeeccCCCCc
Q 004290 323 ASKIMSFTPTLNGL 336 (763)
Q Consensus 323 ~~~~~~~~p~~~~~ 336 (763)
....-.|+|.+..+
T Consensus 1268 ~~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1268 DYGGGGFHPSGNEV 1281 (1516)
T ss_pred ecccccccCCCceE
Confidence 22223466655444
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.003 Score=63.48 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=77.9
Q ss_pred EEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEE
Q 004290 74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL 153 (763)
Q Consensus 74 v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 153 (763)
|++.+..+.+... +..+|...|.+++|+|.. ..++..++.+.+|+|.|+++. ..+..+..+ ..+.++
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~----------~~vssy~a~-~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETS----------CVVSSYIAY-NQIWSC 241 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEecccc----------eeeeheecc-CCceee
Confidence 5555555555544 336888999999999985 448899999999999999973 235556666 789999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 154 ~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+|.-++.++|+.|-..|.|.+||+|..+..
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCch
Confidence 999988899999999999999999998744
No 329
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.19 E-value=0.022 Score=47.44 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=71.1
Q ss_pred eEEEEeCC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 53 V~~l~fsp---~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
|++|++.. +| +.|+.|+.|..||||+- .+.+..+ .....|.++.-... ..|+.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence 67777765 33 58999999999999984 4666776 34567888877766 68999999999999987642
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCC---CCEEEEEeCCCcEE
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR 173 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~~l~s~s~dg~i~ 173 (763)
+...+ -+..+.+|++...+ -.-|++|-.+|.|-
T Consensus 74 -----------lWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----------LWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------eeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 23333 23347777665422 23677888888764
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.012 Score=64.76 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=62.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
+++++|+|..-.||.|-.-|.+.+|...+.+ .+++...|..+|..+.|+|+ |..++++..=|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 5679999999999999999999999977654 44554789999999999999 89999999999999999874
No 331
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.21 Score=48.97 Aligned_cols=182 Identities=14% Similarity=0.141 Sum_probs=116.4
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
+.|-+..|.++.|+|+.+.|++........||=..+|+.++++.-..-.....++|.-+ +.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence 45556669999999999999988888888888778899998884333445567888877 6777777778999998887
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC--CCCCCcccceEEEecCCC
Q 004290 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--AGSSHQECRNILLDLRCG 203 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 203 (763)
............-++.....-....-.++|.|.+ +.|+.+-+-.-+.||-+........ ....+.....
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~-------- 229 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD-------- 229 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccc--------
Confidence 5322111000011122222224556789999965 4555666667777777664331100 0000000000
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
--...|.++.|++..+.+|+-+..++.+.-.|...
T Consensus 230 ---------~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 ---------LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ---------eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 01235678889987778888888888888888764
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.045 Score=60.79 Aligned_cols=185 Identities=19% Similarity=0.253 Sum_probs=111.2
Q ss_pred EeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc-eeEEEEecCCCCEEEEEeCCCc-----EEE
Q 004290 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGT-----LRQ 174 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~l~s~s~dg~-----i~i 174 (763)
|++. +..++.|+.+|.|.+.+-.- ..+..+.++... |..+ +.-+..++|++.++|+. |++
T Consensus 31 ~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 31 CSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred EcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEE
Confidence 5666 68999999999999988763 335677777777 4444 44435578888887764 899
Q ss_pred EECCCCCCCCCCCCCCcccceEEEecCCCceeeccC--CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD--PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
||+...+.-. ...|. +. ..+.. .+....++.+++.+.+ -+.+|+|-.+|.|..+.-.-.....
T Consensus 97 w~lek~~~n~-----sP~c~---~~------~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 97 WDLEKVDKNN-----SPQCL---YE------HRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred ecccccCCCC-----Cccee---ee------eeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc
Confidence 9998764110 01111 00 01111 1234567888999887 5899999999999988533211110
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceE--eecCCCCeeeeec
Q 004290 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR--YTVGDASKIMSFT 330 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~ 330 (763)
. +. .... ....+||++++..++..++-...-..|.+|.+.... +... -.+|...++.+++
T Consensus 162 s-----------r~----~~~~--~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~ 223 (933)
T KOG2114|consen 162 S-----------RQ----DYSH--RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFS 223 (933)
T ss_pred c-----------ce----eeec--cCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecC
Confidence 0 00 0000 112369999999998874444455678888888533 2222 3334444444444
Q ss_pred cC
Q 004290 331 PT 332 (763)
Q Consensus 331 p~ 332 (763)
+.
T Consensus 224 ~~ 225 (933)
T KOG2114|consen 224 DG 225 (933)
T ss_pred CC
Confidence 43
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.77 E-value=0.094 Score=59.82 Aligned_cols=212 Identities=15% Similarity=0.186 Sum_probs=121.7
Q ss_pred CEEEE-EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004290 63 SLLIS-GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-----SDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (763)
Q Consensus 63 ~~Las-gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 136 (763)
++|+. ......|.-.|+++|+.+.........+|.. |.|+. ....-+.|-.+..+..||.+.......
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v---- 567 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV---- 567 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee----
Confidence 44443 3456789999999999999984333334544 44431 123456677788999999996421110
Q ss_pred CCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (763)
Q Consensus 137 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (763)
......+ .......|++-+. ..+||.|+.+|.||+|| +.++.. -..+++-..
T Consensus 568 ~~~~k~Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd-~~g~~A------------------------KT~lp~lG~ 619 (794)
T PF08553_consen 568 DSQSKQY-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYD-RLGKRA------------------------KTALPGLGD 619 (794)
T ss_pred ecccccc-ccCCCceEEEecC--CceEEEEeCCCcEEeec-ccchhh------------------------hhcCCCCCC
Confidence 0001111 2344567777765 35888999999999999 332211 112234567
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEEeCC--CCCCC------cccCCCCCCCCcccccccccccCC---CCCccceeEE
Q 004290 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHV 285 (763)
Q Consensus 217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~i~~v 285 (763)
+|..|..+.+ |+++++.+ +.++.+++.. .++.- ..+.....|.+-.-.+.|.|.... +......+..
T Consensus 620 pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a 697 (794)
T PF08553_consen 620 PIIGIDVTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA 697 (794)
T ss_pred CeeEEEecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence 8999999997 67777665 4677787753 22211 111112223333333444443221 1111135566
Q ss_pred EEcC---CCCEEEEEeCCCeEEEEECCC
Q 004290 286 TFSP---NGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 286 ~~sp---dg~~l~~~s~d~~i~iwd~~~ 310 (763)
.|+- .....++++....+.+|++..
T Consensus 698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 698 KFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EEecCCCCccceEEEeccCEEEEEEHHH
Confidence 6652 123456666778999999976
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.73 E-value=0.079 Score=56.32 Aligned_cols=225 Identities=15% Similarity=0.160 Sum_probs=116.1
Q ss_pred hhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-c------CCCCceEEEEEee---C
Q 004290 35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---E 104 (763)
Q Consensus 35 ~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~------~h~~~V~~v~~~p---~ 104 (763)
.+.+.+.+...++...++|++++.| |=-++|.|.++|.+.|.|++....+..-. . .....|+++.|.. .
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred ccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 3445677778888889999999997 55599999999999999998877776531 1 1345688899983 2
Q ss_pred CCC---cEEEEEeCCCcEEEEECCC-CCCCCCCCCCCCCceeeecccCceeEEE-EecCC--------------------
Q 004290 105 TSD---ELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQCHTRRVKKLA-VEVGN-------------------- 159 (763)
Q Consensus 105 ~~~---~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~sp~~-------------------- 159 (763)
.++ -++++|...|.+.+|.+.- ..+.-. .........+.++|..|. ++.+.
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 112 4788999999999998862 111100 011122224556666665 32211
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe----CCCCcEEEEEe
Q 004290 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGG 235 (763)
Q Consensus 160 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----p~~~~~l~sgs 235 (763)
+.+++.+ .+..++++..-+.+.. ...+ ........+.+- -..+..|++-.
T Consensus 226 ~g~vVvv-Se~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~ 279 (395)
T PF08596_consen 226 PGYVVVV-SESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCLF 279 (395)
T ss_dssp -EEEEEE--SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred CcEEEEE-cccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEEE
Confidence 1244444 4578888887765521 1111 011122233332 11356888889
Q ss_pred CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004290 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 236 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
.+|.|++|.+...+.+.....+.. .....+....++++|..++-.+.. .+.++.+
T Consensus 280 ~~G~i~i~SLP~Lkei~~~~l~~~-----------------~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 280 NNGSIRIYSLPSLKEIKSVSLPPP-----------------LDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp TTSEEEEEETTT--EEEEEE-SS--------------------HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred CCCcEEEEECCCchHhhcccCCCc-----------------cccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 999999999998775543321100 001124556778899866655443 3333333
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.67 E-value=0.25 Score=57.41 Aligned_cols=209 Identities=10% Similarity=0.089 Sum_probs=117.4
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
...|.++.|..+ ...++.+...|.|.+-|..+.. +.....-.+.|.+++|+| +..+++-.+..+++
T Consensus 68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~~-----------~eivg~vd~GI~aaswS~-Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETLE-----------LEIVGNVDNGISAASWSP-DEELLALITGRQTL 133 (1265)
T ss_pred CcceEEEEEecc--cceEEEEecCCcEEEEcccccc-----------eeeeeeccCceEEEeecC-CCcEEEEEeCCcEE
Confidence 358999999998 6788888889999999888632 333444567899999999 56777777776666
Q ss_pred EEEECCCCCCCCCCC-CCCccc----ceEEE-----ecCCCceee-ccCCC---------CCccceEEEEEeCCCCcEEE
Q 004290 173 RQHDFRQGSSCPPAG-SSHQEC----RNILL-----DLRCGAKRS-LADPP---------KQTLSLKSCDISSTRPHLLL 232 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~-~~~~~~----~~~~~-----~~~~~~~~~-~~~~~---------~~~~~v~~i~~~p~~~~~l~ 232 (763)
.+- .....++.... ...... ..+=| +++....+. ..... .....=++|.|--+ |+++|
T Consensus 134 l~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA 211 (1265)
T KOG1920|consen 134 LFM-TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA 211 (1265)
T ss_pred EEE-eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence 552 22222110000 000000 00001 011000000 00000 01112246889887 78888
Q ss_pred EEe----CC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCeEE
Q 004290 233 VGG----SD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVY 304 (763)
Q Consensus 233 sgs----~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~---d~~i~ 304 (763)
+.. .+ ..|++||.. +..- ... + ....-=.+++|-|.|..+++-.. |+.|.
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Ln-s~s------e--------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALN-STS------E--------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhh-ccc------C--------------cccccccceeecCCCCeEeeeeecCCCCcEE
Confidence 842 33 899999988 3211 100 0 00012356899999998887654 67899
Q ss_pred EEECCCCCccc--eEeecCCC-CeeeeeccCCCCcccC
Q 004290 305 LMDVNHAGGRA--MRYTVGDA-SKIMSFTPTLNGLELQ 339 (763)
Q Consensus 305 iwd~~~~~~~~--~~~~~~~~-~~~~~~~p~~~~~~~~ 339 (763)
+|.-+.-..-. ..++.... ...++|..+...++..
T Consensus 270 ffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 270 FFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred EEecCCccccccccCCcccccchheeeecCCCCceeee
Confidence 99877633211 11222233 6678888877766653
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0089 Score=63.88 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=74.5
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE-EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++ .-|..+++ +++|.|+ |++|+.|-.||+|++.|+..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCCCc
Confidence 457889999999999999999999999887 6777788 45666777 9999999 89999999999999999997542
Q ss_pred CCCCCCCCCCcee-eecccCceeEEEEec
Q 004290 130 RGLDDNAITPSAL-YQCHTRRVKKLAVEV 157 (763)
Q Consensus 130 ~~~~~~~~~~~~~-~~~h~~~v~~l~~sp 157 (763)
+.. ...-...|.++-|.+
T Consensus 97 ----------l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ----------LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----------eeccccccccchheeeccc
Confidence 221 122445677777764
No 337
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.65 E-value=0.12 Score=43.19 Aligned_cols=103 Identities=20% Similarity=0.147 Sum_probs=68.5
Q ss_pred eEEEEEeeCCC--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004290 96 VFCTKFVPETS--DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (763)
Q Consensus 96 V~~v~~~p~~~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~ 173 (763)
|+++++..-.+ .+.|+.|+.|..|++|+-.. .+..+. -.+.|++|.-.. +..|+.+-.+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEE
Confidence 66777765221 37899999999999998773 345554 456677777665 36788999999999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC---CCCcEEEEEeCCCcEE
Q 004290 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFAR 241 (763)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p---~~~~~l~sgs~Dg~i~ 241 (763)
+|+-.. .+|-.+. ...++++++.. ++-.-|++|-++|.|-
T Consensus 67 vY~~~~----------------RlWRiKS------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQ----------------RLWRIKS------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcc----------------eeeeecc------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 997532 2232221 12355555543 3334789999998874
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.55 E-value=0.06 Score=59.13 Aligned_cols=165 Identities=8% Similarity=-0.003 Sum_probs=93.6
Q ss_pred eCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---------------------
Q 004290 58 WNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--------------------- 115 (763)
Q Consensus 58 fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~--------------------- 115 (763)
++|||+.|. +.-..+.+.+.|.++.+...++..+ +...-++++|+ +.++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEE
Confidence 345666553 2333466778888887776666322 24456777777 566655541
Q ss_pred -------------------CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004290 116 -------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (763)
Q Consensus 116 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd 176 (763)
++.|.+.|..+..... ...+..+ .-......|+++|++..+++++..+.+|.|.|
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 2335555544310000 0112222 24556788999996655666666799999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
+.+.+.... ........+. ...+- .......+|+++ ++.+.+-.-|..|..||+..
T Consensus 350 v~k~k~~~~---~~~~~~~~vv----------aevev-GlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFD---GKIKPRDAVV----------AEPEL-GLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Chhhhhhhh---ccCCccceEE----------Eeecc-CCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 988653200 0000000000 00011 122345678886 67888888999999999876
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.45 E-value=1.3 Score=47.86 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=46.3
Q ss_pred EEeCCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 56 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 56 l~fsp~g~~Lasgs~D----------~-~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
++.+|.|..+|....+ . .|.||+.. |+.+.++.-.+ +.|.++.|..+ ..|+....||.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence 4556666666655443 2 48899865 56666663333 89999999886 56667778999999998
Q ss_pred C
Q 004290 125 S 125 (763)
Q Consensus 125 ~ 125 (763)
.
T Consensus 109 ~ 109 (410)
T PF04841_consen 109 F 109 (410)
T ss_pred C
Confidence 6
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.43 E-value=0.51 Score=49.00 Aligned_cols=173 Identities=15% Similarity=0.206 Sum_probs=78.1
Q ss_pred EeCCCCCEEEEEeC-C--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 57 SWNSKGSLLISGSD-D--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 57 ~fsp~g~~Lasgs~-D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 133 (763)
+|.+||+.|+-++. | ..+.+.|+.+++..+.. .+-........++|+ ++.++-......|+-.|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e~---- 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLEE---- 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT--E----
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCcE----
Confidence 46678976665544 4 45677789998876654 332233446677888 57776666667888889887431
Q ss_pred CCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCCC-CCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290 134 DNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGS-SCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 134 ~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
...+......+-...|.. .+...++-.-.... -|..-... ...........|....+++..+....+..
T Consensus 115 ------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~- 185 (386)
T PF14583_consen 115 ------RVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE- 185 (386)
T ss_dssp ------EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-
T ss_pred ------EEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-
Confidence 122333344444455542 23333322211000 00000000 00000111223555666777666555443
Q ss_pred CCCccceEEEEEeCCCCcEEEEEe---CCCc-EEEEeCCC
Q 004290 212 PKQTLSLKSCDISSTRPHLLLVGG---SDAF-ARLYDRRM 247 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs---~Dg~-i~iwd~~~ 247 (763)
....+.-+.|+|.++.+|+-|- .+.. -|||-+++
T Consensus 186 --~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 186 --DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp --ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred --cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 2456778999998876666543 2332 36776653
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.89 Score=48.60 Aligned_cols=204 Identities=16% Similarity=0.161 Sum_probs=127.3
Q ss_pred eEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCC
Q 004290 53 VNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFS 128 (763)
Q Consensus 53 V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~ 128 (763)
-..+++++.+. ..++...++.|.+.|..+.+.......+. ....+++.|+ +..+..+.. ++++.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC--CCEEEEEecccCCceEEEEeCCCCe
Confidence 34677888887 55556667899999988888887774444 6788999999 445544443 6788888877632
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
.......-..+ ..+++.|++...+++-..++.|.+.|........ ... ..
T Consensus 152 ----------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~-------------~~---- 201 (381)
T COG3391 152 ----------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSV-------------GS---- 201 (381)
T ss_pred ----------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--ccc-------------cc----
Confidence 23333222233 8899999655456566678999999966654210 000 00
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCC--CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
..........+.++|++.+..++-..+ +.+...|..++....... ..... ....+.
T Consensus 202 --~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~~-~~~~v~ 259 (381)
T COG3391 202 --LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGSG-APRGVA 259 (381)
T ss_pred --ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------ccccC-CCCcee
Confidence 001112335678899743344443333 588888888765332100 00011 145578
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290 287 FSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (763)
Q Consensus 287 ~spdg~~l~~~s~-d~~i~iwd~~~~~ 312 (763)
++|+|.++.+... .+.+.+-|..+..
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 9999999988865 5889999888843
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.42 E-value=0.71 Score=44.34 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=46.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE-EEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-TKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~-v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
|++++.|...|.+++.+..+|.....+... +.|.+ ....++ +.++..++.|++.+..|..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a~~d~~--~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence 667899999999999999999877776322 22222 223455 68999999999999999886
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.36 E-value=0.13 Score=54.50 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=95.3
Q ss_pred CCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 59 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 59 sp~g~~Lasg---------s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
|||+++++.. +..+.+.|+|+++++..... . ....+....|+|+ |+.++... ++.|.+++...+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~-~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-P-PPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-C-CccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence 6888877763 22467899999997655433 2 2567889999999 78888876 67899998865422
Q ss_pred CCCCCCCCCCceeeecc---------cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC------------CCCCC
Q 004290 130 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------PPAGS 188 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h---------~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~------------~~~~~ 188 (763)
..+.... .-..+.|- -+.-..+-|+|++..+++.--.+..|+.+.+-..... +..+.
T Consensus 76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred EEecccc--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 1110000 00001110 1233568899955444444445555655543322111 11122
Q ss_pred CCcccceEEEecCCCceeeccCC---CCCccceEEEEEeCCCCcEEEEE--eCC---CcEEEEeCCCCC
Q 004290 189 SHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLP 249 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~~l~sg--s~D---g~i~iwd~~~~~ 249 (763)
........++++..+....+... ......+..+.|.++ +..|+.. ..+ -.+.++|..++.
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCc
Confidence 22223344566666654433322 234567889999997 4534333 222 236677776654
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.26 E-value=2.6 Score=46.83 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=42.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC-----CceE--EEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVF--CTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~-----~~V~--~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
+..+..++.++.|.-.|..+|+.+-.+..... ..+. .+... + +..++.++.++.|..+|.++++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~--~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D--PRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c--CCeEEEecCCCeEEEEECCCCC
Confidence 45567778889999999999988877632221 0110 11111 1 2578888889999999998754
No 345
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.17 E-value=0.23 Score=53.56 Aligned_cols=180 Identities=14% Similarity=0.119 Sum_probs=99.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEccCCCC------ceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004290 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~------~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 137 (763)
.++.++.++.+...|..+|+.+......... ....+.-+|--.+..++.++.++.+..+|..+++.
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-------- 278 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-------- 278 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--------
Confidence 4566777888888999888766554211100 00111112210135677777899999999987532
Q ss_pred CCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccc
Q 004290 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (763)
Q Consensus 138 ~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (763)
+.... ......+.. .+..++.++.+|.+..+|..+++. +|...... ...
T Consensus 279 --~W~~~--~~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~~----------~~~ 327 (394)
T PRK11138 279 --VWKRE--YGSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE--------------LWSQSDLL----------HRL 327 (394)
T ss_pred --EEeec--CCCccCcEE---ECCEEEEEcCCCeEEEEECCCCcE--------------EEcccccC----------CCc
Confidence 11111 111122233 234566778899999999988752 22211000 001
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee-EEEEcCCCCEEEE
Q 004290 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT-HVTFSPNGEEVLL 296 (763)
Q Consensus 218 v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~-~v~~spdg~~l~~ 296 (763)
..+..+. +.++++++.||.|.+.|..+++.+...... .. .+. ...+ .+..|++
T Consensus 328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------------------~~--~~~s~P~~--~~~~l~v 381 (394)
T PRK11138 328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVD-------------------SS--GFLSEPVV--ADDKLLI 381 (394)
T ss_pred ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcC-------------------CC--cceeCCEE--ECCEEEE
Confidence 1111222 347889999999999999998754332100 00 011 1112 2447899
Q ss_pred EeCCCeEEEEEC
Q 004290 297 SYSGEHVYLMDV 308 (763)
Q Consensus 297 ~s~d~~i~iwd~ 308 (763)
++.||.|+.++.
T Consensus 382 ~t~~G~l~~~~~ 393 (394)
T PRK11138 382 QARDGTVYAITR 393 (394)
T ss_pred EeCCceEEEEeC
Confidence 999999998864
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.07 E-value=0.96 Score=46.13 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=44.0
Q ss_pred cEEEEEcCcCcEEEEEecCCcceEEEEeeCCC-CeEEEE-eCCCcEEEEcCCCCCCccccC
Q 004290 650 RWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD-CVVATS-GIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 650 ~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~-~~laS~-s~D~~IrvW~~~~~~~~~~~~ 708 (763)
-|-++|++|++.++++.. ..++.+++.+.+. ++|.+. ..++.+.+||..+++.+...+
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 366778899999999975 2458899999887 477654 568999999999999887764
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.04 E-value=1.1 Score=44.10 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=91.8
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCCCEEEEEeC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE 168 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~ 168 (763)
.+-...+..++|+|+. +.++++....+.|...+... +.++.+.-. .+..-.|++.. ++.++++--.
T Consensus 18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er 84 (248)
T PF06977_consen 18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLG-NGRYVLSEER 84 (248)
T ss_dssp TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT
T ss_pred CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEEC-CCEEEEEEcC
Confidence 4556679999999985 67888888888888887652 223433211 35577888865 5456655556
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
++.+.++++........ ...+. ...+.....+...+-.++|+|. .+.|+++-...-.+||.++..
T Consensus 85 ~~~L~~~~~~~~~~~~~--------~~~~~------~~~l~~~~~~N~G~EGla~D~~-~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLD--------RADVQ------KISLGFPNKGNKGFEGLAYDPK-TNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp TTEEEEEEE----TT----------EEEEE------EEE---S---SS--EEEEEETT-TTEEEEEEESSSEEEEEEEST
T ss_pred CCcEEEEEEeccccccc--------hhhce------EEecccccCCCcceEEEEEcCC-CCEEEEEeCCCChhhEEEccc
Confidence 89999999855432100 00000 0011122234556889999997 456667777777777777642
Q ss_pred CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004290 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~ 310 (763)
..- ..........+......-..+.+++++|.. .+++.+..+..|..+|...
T Consensus 150 ~~~----------~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 150 PGG----------FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp T-S----------S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred cCc----------cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 100 000000000000000111138889999965 4555555688999998433
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.04 E-value=0.052 Score=59.03 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=84.4
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004290 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
..|.--++.. ...+++.|+.-|.+++|+-..++..... ..+....+..+..++.
T Consensus 34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~------------------------~~~~~~~~~~~~vs~~- 87 (726)
T KOG3621|consen 34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLK------------------------NEGATGITCVRSVSSV- 87 (726)
T ss_pred ceEEEEEeec-CCceEEEecccceEEEEecCchhhhccc------------------------ccCccceEEEEEecch-
Confidence 3344444544 5689999999999999997776532111 1112345566778886
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 004290 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (763)
Q Consensus 228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd 307 (763)
.+++|.|+..|.|.++-+....+- ...++.+.+- .|.. .||+++|++++..|++|...|+|.+-.
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~-----------~~~~~t~~d~---~~~~-rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPR-----------DLDYVTPCDK---SHKC-RVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCC-----------cceeeccccc---cCCc-eEEEEEecccccEEeecCCCceEEEEE
Confidence 578899999999999988764321 1222222221 1333 699999999999999999999999998
Q ss_pred CCC
Q 004290 308 VNH 310 (763)
Q Consensus 308 ~~~ 310 (763)
+++
T Consensus 153 L~s 155 (726)
T KOG3621|consen 153 LDS 155 (726)
T ss_pred ech
Confidence 887
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.34 Score=52.14 Aligned_cols=124 Identities=13% Similarity=0.148 Sum_probs=71.8
Q ss_pred eeccccCceEEEEeCCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 45 ELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs---~D-~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
.+..-...+..-+|+|++..++-.+ .. ..+.++|+.+++...... ..+.-..-+|+|++ ..++++...||...
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG-~~l~f~~~rdg~~~ 263 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG-SKLAFSSSRDGSPD 263 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC-CEEEEEECCCCCcc
Confidence 3333455677788999998776442 22 359999999887554441 23344567899994 44555666677755
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE--EECCCC
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ--HDFRQG 180 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i--wd~~~~ 180 (763)
||-+...... ...+..-.+.-..=.|+|++..++++.+..|.-.| .|+...
T Consensus 264 iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 264 IYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 5544432211 22233222222345789966666666666665444 454444
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.94 E-value=0.28 Score=51.19 Aligned_cols=186 Identities=14% Similarity=0.167 Sum_probs=109.0
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-----CCcEEEEEeC----------CCcEEEEECCCCCCCCCCCCC
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPET-----SDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNA 136 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~ 136 (763)
..|+|.|..+.+.+..+.-.....+.+++...-. ...+|+.|.. .|.|.++++...... ...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~---~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN---NFK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc---ceE
Confidence 3688999888887766643445566666555411 1367777653 288999999863000 000
Q ss_pred CCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004290 137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (763)
Q Consensus 137 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (763)
.+.+.. ....++|++|+-. ++.++++. .+.|.+|++...+.. .....++ ...
T Consensus 79 l~~i~~-~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l---------~~~~~~~--------------~~~ 130 (321)
T PF03178_consen 79 LKLIHS-TEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTL---------LKKAFYD--------------SPF 130 (321)
T ss_dssp EEEEEE-EEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSE---------EEEEEE---------------BSS
T ss_pred EEEEEE-EeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccc---------hhhheec--------------ceE
Confidence 122222 2457899999776 34444333 489999999887511 0111111 112
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEE
Q 004290 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (763)
Q Consensus 217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~ 295 (763)
.+.++.... +++++|.....+.++..+... .+..+. ......+++++.|-+++..++
T Consensus 131 ~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va-------------------~d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 131 YITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILVA-------------------RDYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp SEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEEE-------------------EESS-BEEEEEEEE-SSSEEE
T ss_pred EEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEEE-------------------ecCCCccEEEEEEecCCcEEE
Confidence 455666553 599999998888888554311 111110 001122589999997778899
Q ss_pred EEeCCCeEEEEECCC
Q 004290 296 LSYSGEHVYLMDVNH 310 (763)
Q Consensus 296 ~~s~d~~i~iwd~~~ 310 (763)
++..+|.+.++....
T Consensus 189 ~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEETTSEEEEEEE-S
T ss_pred EEcCCCeEEEEEECC
Confidence 999999999998874
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.93 E-value=0.27 Score=56.21 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=111.9
Q ss_pred cchhhhhccccceeeccccCc-eEEEEeCCC-------CCEEEEEeCCCcEEEEeCCCC--eEEEEEc--cCCCCceEEE
Q 004290 32 MHSSLVRRLSQERELEGHQGC-VNAISWNSK-------GSLLISGSDDTHINVWSYSSR--KLLHSIE--TGHSANVFCT 99 (763)
Q Consensus 32 ~~~~~~~~~~~~~~l~gH~~~-V~~l~fsp~-------g~~Lasgs~D~~v~iWd~~~~--~~~~~~~--~~h~~~V~~v 99 (763)
++.-.+.+.+.+.+++-|... |..++ |+ ..-.+.|-.+..|..||.+-. +++..-. ........|+
T Consensus 506 ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 506 LYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred eEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 344448888999999988754 55544 43 234566777889999998743 2332110 1233455666
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+-..+ .+||.|+.+|.||+||--. . +....+.+...+|.+|..+.+ |++++..+ +..+.+++..-
T Consensus 584 aTt~~---G~iavgs~~G~IRLyd~~g-~---------~AKT~lp~lG~pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~ 648 (794)
T PF08553_consen 584 ATTED---GYIAVGSNKGDIRLYDRLG-K---------RAKTALPGLGDPIIGIDVTAD-GKWILATC-KTYLLLIDTLI 648 (794)
T ss_pred EecCC---ceEEEEeCCCcEEeecccc-h---------hhhhcCCCCCCCeeEEEecCC-CcEEEEee-cceEEEEEEee
Confidence 66655 5899999999999999432 1 223445677899999999994 55554443 46788888642
Q ss_pred --CCCCCCCC---C--CCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCC
Q 004290 180 --GSSCPPAG---S--SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 180 --~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
++.....+ . ...........++..+...+....+.....+...|+- +.....++.+....+.+|+++.
T Consensus 649 ~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 649 KDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred ecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHH
Confidence 21111110 0 0001111222222222111111112233444556653 1123455556678999999975
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.89 E-value=1.7 Score=47.19 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=68.8
Q ss_pred ceEEEEeCCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---------
Q 004290 52 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--------- 117 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasg-s~D----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--------- 117 (763)
.+..+++||+|++||-+ +.. .+|+++|+++|+.+...... .....+.|.++ ++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTT--SSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCC--CCEEEEEEeCcccccccCCC
Confidence 34468899999998854 333 45999999999876543111 11223999999 56665554433
Q ss_pred --cEEEEECCCCCCCCCCCCCCCCceeeecccCc--eeEEEEecCCCCEEEEEeCCC---cEEEEECCCC
Q 004290 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 180 (763)
Q Consensus 118 --~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~s~s~dg---~i~iwd~~~~ 180 (763)
.|+.|.+.+.... -...+...... ...+..++++..+++...... .+.+.|+...
T Consensus 201 ~~~v~~~~~gt~~~~--------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSE--------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHh--------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3778887764321 12333333322 557788885544454454433 4777788774
No 353
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.89 E-value=3.1 Score=44.38 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=61.5
Q ss_pred EEeeecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc----eEEEEeeCC-------------
Q 004290 618 RYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV----VNCVQCHPF------------- 680 (763)
Q Consensus 618 ~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~----V~~v~~sp~------------- 680 (763)
.+......+..|. .+|++++.|....=|+|.++|+.++..++..+|=.+. |....-...
T Consensus 302 ~l~D~~R~~~~i~----~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 302 GLPDSKREGESIC----LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eeccCCceEEEEE----ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 4444444455555 8999999999877899999999999999999985442 211111111
Q ss_pred -CC-eEEEEeCCCcEEEEcCCCCCCccccC
Q 004290 681 -DC-VVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 681 -~~-~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
.. +++=+-.-|.|-||.++.++.+..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 01 44456678999999999999887764
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.03 Score=59.99 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=64.9
Q ss_pred CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcE
Q 004290 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i 172 (763)
..|.-+.|+|. -.++|.+..+|.|-+..++- .-+.++.-|...++ +++|.| +|++++.|-.||+|
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I 86 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTI 86 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeE
Confidence 45778999999 68999999999999998883 33777776777777 999999 57999999999999
Q ss_pred EEEECCCCCCC
Q 004290 173 RQHDFRQGSSC 183 (763)
Q Consensus 173 ~iwd~~~~~~~ 183 (763)
++.|+.++..+
T Consensus 87 ~L~Dve~~~~l 97 (665)
T KOG4640|consen 87 RLHDVEKGGRL 97 (665)
T ss_pred EEEEccCCCce
Confidence 99999998643
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.72 E-value=1.2 Score=46.41 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=91.2
Q ss_pred eEEEEeCCC----CCEEEEEeC----------CCcEEEEeCCCC-----eEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290 53 VNAISWNSK----GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 53 V~~l~fsp~----g~~Lasgs~----------D~~v~iWd~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+..+.|..+ ..+|+.|.. .|.|.++++... +..........++|++++-.. +. |+.+
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~~ 104 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVVA 104 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEEe
Confidence 344445443 467877743 288999999884 222222234578899988773 34 4444
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004290 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
. .+.|.+|++...+ . ......+. ....+.++... +++++.|.....+.++..+.....
T Consensus 105 ~-g~~l~v~~l~~~~--~-----l~~~~~~~-~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~---------- 162 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSK--T-----LLKKAFYD-SPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNK---------- 162 (321)
T ss_dssp E-TTEEEEEEEETTS--S-----EEEEEEE--BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-----------
T ss_pred e-cCEEEEEEccCcc--c-----chhhheec-ceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCE----------
Confidence 4 4889999999743 0 01112222 22356666654 358888888888888754432100
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
..+.. .......++++.|-+++ +.++++..+|.+.++...
T Consensus 163 -l~~va-----------~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 163 -LILVA-----------RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEE-----------EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred -EEEEE-----------ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 00100 01124568899998764 699999999999999876
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.67 E-value=0.035 Score=38.53 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=29.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL 84 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~ 84 (763)
...|.+++|+|...+||.|..||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 4443
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.56 Score=50.47 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=107.9
Q ss_pred cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe---CC-CcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004290 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GD-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s---~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
.+.+-|.+ +.....+ ..-...+..-+|+|+ +..++... .. ..+.++|+..+.... +..+.++
T Consensus 174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~~~g~-- 239 (425)
T COG0823 174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILNFNGN-- 239 (425)
T ss_pred eEEEEccC-CcceeEe-cccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccce--------eeccCCc--
Confidence 34444544 4444444 334456777889998 45544432 22 358999999754322 3333333
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcE--EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004290 149 RVKKLAVEVGNPHVVWSASEDGTL--RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
-..-+|+|++..++++...||.. ++.|+...... .+....+. -..=.|+|+
T Consensus 240 -~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-----------------------~Lt~~~gi---~~~Ps~spd 292 (425)
T COG0823 240 -NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-----------------------RLTNGFGI---NTSPSWSPD 292 (425)
T ss_pred -cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-----------------------ecccCCcc---ccCccCCCC
Confidence 34458999887778888888864 45566665421 01111111 114468998
Q ss_pred CCcEEEEEeCCCcEEEE--eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCe-
Q 004290 227 RPHLLLVGGSDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH- 302 (763)
Q Consensus 227 ~~~~l~sgs~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~- 302 (763)
+..+.++.+..|.-.|| |+...+.. .. ...+.. -..-.|+|||++|+..+. +|.
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~~--------------ri-----T~~~~~---~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQVT--------------RL-----TFSGGG---NSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCcee--------------Ee-----eccCCC---CcCccCCCCCCEEEEEeccCCce
Confidence 65556666666765555 44433210 00 001111 115568999999888775 344
Q ss_pred -EEEEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004290 303 -VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (763)
Q Consensus 303 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 336 (763)
|.+.++.++.. ......+.....-.+.|....+
T Consensus 351 ~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 351 DIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMI 384 (425)
T ss_pred eeEEeccCCCCc-EEEccccccCCCCCcCCCCceE
Confidence 77777766543 3333333334444455544444
No 358
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.35 E-value=0.15 Score=50.19 Aligned_cols=107 Identities=24% Similarity=0.216 Sum_probs=88.7
Q ss_pred CchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCC
Q 004290 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (763)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~ 438 (763)
+......|+..++.....+. |-.||..|+.+|...+.+ .++|.+|+.++++-+- ...|+.||..++.+||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~---~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGE---YEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCh
Confidence 34456667777777766666 779999999999877665 5689999999998553 3468999999999999
Q ss_pred CCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCCh
Q 004290 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (763)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~ 475 (763)
...++..++..++..+++...+.........+.|+..
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999999888777788888865
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.14 Score=47.10 Aligned_cols=120 Identities=28% Similarity=0.289 Sum_probs=91.6
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhc-cccccchhhhHHhHHHHhcCCCCCc
Q 004290 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDSSSF 441 (763)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~a~~d~~~~~~~~~~~~ 441 (763)
...++.-++..+..|. |-.|..-|..+|..++.... .++..||.||+.+.++ +.|. .++.+|..++.+.|...
T Consensus 95 ad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e----~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGD-YEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWE----SAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHH----HHHHHHHhhHhcCchhH
Confidence 3445556666666665 55677788889988876533 6678899999999997 4565 57889999999999999
Q ss_pred hhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (763)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (763)
++..+...+...+..+.++..-.+......|.......++..+...+
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 99998888888888888888777777788888776666665554443
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=5 Score=42.87 Aligned_cols=229 Identities=14% Similarity=0.151 Sum_probs=130.4
Q ss_pred ceEEEEeCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 52 ~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
....+...+++..+. +-.....+.+.+.......... ..-......+++++.. .+.++....+..|.+.|.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~-- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNT-- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCcccc--
Confidence 455677888885433 3323235555555522222222 1111344677888884 4466666667999999966521
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
...... -......++++|+++.+.++-. .++++.+.|-.+.+... . ..
T Consensus 108 --------~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~~------- 157 (381)
T COG3391 108 --------VLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-IP------- 157 (381)
T ss_pred --------eeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-Ee-------
Confidence 122221 2226778999996655555555 36888888877665220 0 01
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
....+ ..++++|++...+++-..++.|.+.|........ - .... . .+... .-..+.++
T Consensus 158 ----vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~------------~--~~~~~-~P~~i~v~ 215 (381)
T COG3391 158 ----VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGS------------L--VGVGT-GPAGIAVD 215 (381)
T ss_pred ----cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cccc------------c--cccCC-CCceEEEC
Confidence 11122 7899999854455555688999999977654321 0 0000 0 00001 24568899
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCCccceEeecCC-CCeeeeeccCCCCc
Q 004290 289 PNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGD-ASKIMSFTPTLNGL 336 (763)
Q Consensus 289 pdg~~l~~~s~d---~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~ 336 (763)
|+|.++.+.-.. +.+...|..++.........+. ....+...|+....
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~ 267 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA 267 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE
Confidence 999987776654 5899999888654333222222 45556677765544
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.10 E-value=0.8 Score=49.54 Aligned_cols=147 Identities=11% Similarity=0.103 Sum_probs=77.1
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE-
Q 004290 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF- 122 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw- 122 (763)
+.+....-....+.++|+|++++.+ .||.-.|+.....+... + +.-....|.+. ..+|+-...++|.|+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~-----G~g~~~vw~~~---n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-F-----GSGLSFVWSSR---NRYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-E-----EE-SEEEE-TS---SEEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-c-----CceeEEEEecC---ccEEEEECCCeEEEEE
Confidence 3444455568899999999999885 45777788754444322 2 33456788885 457777778999996
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004290 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
++... ....+. ....+..|- + |.+|...+. +.|.+||+.+++.+ .
T Consensus 96 n~~~~-----------~~k~i~-~~~~~~~If--~--G~LL~~~~~-~~i~~yDw~~~~~i--------------~---- 140 (443)
T PF04053_consen 96 NFKNE-----------VVKSIK-LPFSVEKIF--G--GNLLGVKSS-DFICFYDWETGKLI--------------R---- 140 (443)
T ss_dssp TTEE------------TT------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EE--------------E----
T ss_pred cCccc-----------cceEEc-CCcccceEE--c--CcEEEEECC-CCEEEEEhhHccee--------------e----
Confidence 44321 112222 111233332 2 456655544 48999999987632 1
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
.+ ....|..+.|+++ +++++..+.+ .+.|++..
T Consensus 141 ----~i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 141 ----RI-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYN 173 (443)
T ss_dssp ----EE-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-
T ss_pred ----EE-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEec
Confidence 11 1124789999997 6788887755 66676654
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.07 E-value=2.9 Score=44.23 Aligned_cols=92 Identities=8% Similarity=0.091 Sum_probs=52.8
Q ss_pred ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC------------
Q 004290 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------------ 92 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h------------ 92 (763)
+....+.+++...+..+.+. .....+....|||+|+.||-... +.|.+++..++...+....|-
T Consensus 20 s~~~~y~i~d~~~~~~~~l~---~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLT---PPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ccceeEEEEecCCCceEECc---CCccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 34455555553333222222 22667889999999999998764 689999998885554332230
Q ss_pred ----CCceEEEEEeeCCCCcEEEEEeC-CCcEEEE
Q 004290 93 ----SANVFCTKFVPETSDELVVSGAG-DAEVRLF 122 (763)
Q Consensus 93 ----~~~V~~v~~~p~~~~~~l~s~s~-dg~I~iw 122 (763)
-+.-..+.|+|+ +++|+.... +..|+.+
T Consensus 96 eEEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEY 128 (353)
T ss_dssp HHHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EE
T ss_pred cccccccccceEECCC--CCEEEEEEECCcCCceE
Confidence 112356889999 677776554 3334333
No 363
>PHA02713 hypothetical protein; Provisional
Probab=95.05 E-value=1.3 Score=50.02 Aligned_cols=63 Identities=8% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCCCCcEEEEEeCCC-----cEEEEECCCC
Q 004290 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF 127 (763)
Q Consensus 61 ~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~l~s~s~dg-----~I~iwd~~~~ 127 (763)
++.+.+.||.+ ..+..||+.+.... .+..-... .-.+++.. + +.+.+.|+.++ .+..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~-~--g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI-D--DTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE-C--CEEEEECCcCCCCCCceEEEEECCCC
Confidence 56777777753 34677888776532 22111111 11122222 3 57888888764 3788998864
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=0.41 Score=51.70 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=77.0
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
...+..+.++|+ +++++.++ ||.-.|+.... .+. ...+.....+|.+ . ..+++-...++|
T Consensus 32 ~~~p~~ls~npn--gr~v~V~g-~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~I 91 (443)
T PF04053_consen 32 EIYPQSLSHNPN--GRFVLVCG-DGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSSTI 91 (443)
T ss_dssp SS--SEEEE-TT--SSEEEEEE-TTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-E
T ss_pred CcCCeeEEECCC--CCEEEEEc-CCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCeE
Confidence 345789999999 78888855 78888887432 121 1245567789988 4 456677778899
Q ss_pred EEE-ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290 173 RQH-DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 173 ~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
.++ ++...... .+. . ...+..| .+ |.+|+..+.+ .|.+||..+++.+
T Consensus 92 ~I~kn~~~~~~k-----------------------~i~-~---~~~~~~I--f~--G~LL~~~~~~-~i~~yDw~~~~~i 139 (443)
T PF04053_consen 92 KIYKNFKNEVVK-----------------------SIK-L---PFSVEKI--FG--GNLLGVKSSD-FICFYDWETGKLI 139 (443)
T ss_dssp EEEETTEE-TT--------------------------------SS-EEEE--E---SSSEEEEETT-EEEEE-TTT--EE
T ss_pred EEEEcCccccce-----------------------EEc-C---CcccceE--Ec--CcEEEEECCC-CEEEEEhhHccee
Confidence 996 33222100 000 0 0011222 11 4566666655 8999999998766
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
..+.. . +|..|.|+++|.+++..+.+ .+++++.+.
T Consensus 140 ~~i~v----------------------~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 140 RRIDV----------------------S-AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEESS------------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEec----------------------C-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 54421 1 38899999999998888755 667766544
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.03 E-value=1.8 Score=41.74 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=72.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
..+++.|+..+.++--|..+|..+... --...|.+-+..- |++++.|...|.+++.++.++.. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~----------~w 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ----------IW 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh----------ee
Confidence 457788999999999999999877653 2234454444442 57899999999999999998532 33
Q ss_pred eeecccCceeEE-EEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 142 LYQCHTRRVKKL-AVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 142 ~~~~h~~~v~~l-~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
.+.. .+.|.+= ...+ ++.+++.++.|++.+..|.++..
T Consensus 88 ~f~~-~~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 88 NFVI-LETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeee-hhhhccceEEcC-CCceEEEecCCCcEEEecccccc
Confidence 3332 2223322 2334 66899999999999999998865
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.89 E-value=4.3 Score=40.01 Aligned_cols=214 Identities=7% Similarity=0.001 Sum_probs=112.8
Q ss_pred ccccceeeccc-cCceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004290 39 RLSQERELEGH-QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 39 ~~~~~~~l~gH-~~~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
+.+.+.++.-. ......+.|..+|.++-|.+.-| .|+.+|+.+++.+....-....--..++...+ .+..-.=.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWK 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEec
Confidence 34566666522 23455788877888888887766 69999999998776553232322344555543 55555667
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004290 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
++...+||..+. +.+..+. ..+.=..|+. ++..++.| .....|+++|..+.+.. .
T Consensus 109 ~~~~f~yd~~tl----------~~~~~~~-y~~EGWGLt~--dg~~Li~S-DGS~~L~~~dP~~f~~~-----------~ 163 (264)
T PF05096_consen 109 EGTGFVYDPNTL----------KKIGTFP-YPGEGWGLTS--DGKRLIMS-DGSSRLYFLDPETFKEV-----------R 163 (264)
T ss_dssp SSEEEEEETTTT----------EEEEEEE--SSS--EEEE--CSSCEEEE--SSSEEEEE-TTT-SEE-----------E
T ss_pred CCeEEEEccccc----------eEEEEEe-cCCcceEEEc--CCCEEEEE-CCccceEEECCcccceE-----------E
Confidence 899999999862 3344443 3455667773 24445544 44568889997765422 1
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccc-cc-
Q 004290 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH-LS- 273 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 273 (763)
.+ ....+ ......++-+.|-. |.+.|-.-....|...|..+|+....+.. ..+.+.. ..
T Consensus 164 ~i-~V~~~--------g~pv~~LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDl--------s~L~~~~~~~~ 224 (264)
T PF05096_consen 164 TI-QVTDN--------GRPVSNLNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDL--------SGLRPEVGRDK 224 (264)
T ss_dssp EE-E-EET--------TEE---EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE---------HHHHHHHTSTT
T ss_pred EE-EEEEC--------CEECCCcEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEh--------hHhhhcccccc
Confidence 11 11100 01123455666653 55666666666777778887764433210 0000000 00
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeC
Q 004290 274 EHGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
.......-.+.++|.|....|+..+.
T Consensus 225 ~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cccccCCeeEeEeEeCCCCEEEEEeC
Confidence 00011225899999998776666654
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.88 E-value=2.2 Score=43.64 Aligned_cols=246 Identities=13% Similarity=0.131 Sum_probs=127.4
Q ss_pred cccccchhhhhcccccee--ecc-cc----CceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEccCCCCceEE
Q 004290 28 HSLQMHSSLVRRLSQERE--LEG-HQ----GCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFC 98 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~--l~g-H~----~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~ 98 (763)
--|.+|+ .+++.+..+ |.+ |. -..+.++++.||++++.. +--..|.|-|+..++.+..+... + |
T Consensus 67 Dvv~~~D--~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G---C 139 (342)
T PF06433_consen 67 DVVEIWD--TQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G---C 139 (342)
T ss_dssp EEEEEEE--TTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S---E
T ss_pred eEEEEEe--cCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C---E
Confidence 3566676 455555543 332 12 123457888999988765 33457999999999998888321 1 3
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
.-..|.. .+-|.+-+.||.+.-..+... ++.. ......|..-.+++. .-++.. .+..++-.+.+|.|+--|+
T Consensus 140 ~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~-Gk~~----~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 140 WLIYPSG-NRGFSMLCGDGSLLTVTLDAD-GKEA----QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp EEEEEEE-TTEEEEEETTSCEEEEEETST-SSEE----EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEE
T ss_pred EEEEecC-CCceEEEecCCceEEEEECCC-CCEe----EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEec
Confidence 3334543 356888889999999998852 2110 000112222222232 223443 3334444678899999998
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--------CC--CcEEEEeCCC
Q 004290 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SD--AFARLYDRRM 247 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--------~D--g~i~iwd~~~ 247 (763)
...... ...-|.+.....+.-... .+.---+++++.. +.|++-- .| ..|.+||+.+
T Consensus 213 sg~~~~----------~~~~~~~~t~~e~~~~Wr---PGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 213 SGDSAK----------FGKPWSLLTDAEKADGWR---PGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp TTSSEE----------EEEEEESS-HHHHHTTEE---E-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred cCCccc----------ccCcccccCccccccCcC---Ccceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 776421 011111111000000000 1112235666643 3333321 12 2477778887
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCeEEEEECCCCCccceEeecCCC
Q 004290 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDA 323 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~ 323 (763)
.+.+..+. + ..++.+|..+.+.+ +|++.+ .++.+.+||..+++........+..
T Consensus 279 ~krv~Ri~----------------l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~ 334 (342)
T PF06433_consen 279 HKRVARIP----------------L------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGET 334 (342)
T ss_dssp TEEEEEEE----------------E------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS
T ss_pred CeEEEEEe----------------C------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCC
Confidence 76554331 1 11488899998765 665554 4899999999998755544444443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=1.2 Score=47.37 Aligned_cols=149 Identities=13% Similarity=0.173 Sum_probs=85.6
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC------CEEEEEeCCCcEEEEECCCCC
Q 004290 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP------HVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~------~~l~s~s~dg~i~iwd~~~~~ 181 (763)
-+|.++..-..++-.|++.+ +.+...+-+.. |.-+.+.|+.. ..-+.|-.|..|.-||.|-..
T Consensus 347 lil~~~~~~~~l~klDIE~G----------KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERG----------KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred eEeeCCCCcCcceeeecccc----------eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 34555666667777787763 33555655555 66667766321 111246678899999998543
Q ss_pred CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004290 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.- ...+. .++. -.......|++-..+ .++|+||.+|.||+||.- +....+.
T Consensus 416 ~~-----------kl~~~--q~kq------y~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri-~~~AKTA------- 466 (644)
T KOG2395|consen 416 KN-----------KLAVV--QSKQ------YSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRI-GRRAKTA------- 466 (644)
T ss_pred cc-----------eeeee--eccc------cccccccceeeecCC--ceEEEeecCCcEEeehhh-hhhhhhc-------
Confidence 20 11110 0000 001223445555543 499999999999999984 3221111
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
. .|... +|+.|..+.+|++|++.+ +..+.+-++.-
T Consensus 467 ------l------PgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 467 ------L------PGLGD-AIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ------c------cccCC-ceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 0 11222 699999999999887655 55666665543
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.76 E-value=0.085 Score=49.66 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
+..|+.|+.+|.|.+|++............-...|.++--.-+. +.+..+++.||.|+.|++.... .+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~-~~~~c~~~~dg~ir~~n~~p~k----------~~g 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRD-SSLGCVGAQDGRIRACNIKPNK----------VLG 138 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccc-cceeEEeccCCceeeeccccCc----------eee
Confidence 45788999999999999863211111111222334333222221 4588999999999999998522 133
Q ss_pred eeeccc-CceeEEEEecCCCCEEEEE--eCCCcEEEEECCCC
Q 004290 142 LYQCHT-RRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQG 180 (763)
Q Consensus 142 ~~~~h~-~~v~~l~~sp~~~~~l~s~--s~dg~i~iwd~~~~ 180 (763)
....|. .++..+..+. ...+++.+ |.|..++.|++..-
T Consensus 139 ~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 139 YVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence 333444 2333333332 23444444 55555555555443
No 370
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.72 E-value=1.3 Score=49.15 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=64.2
Q ss_pred CcEEEEeCCC-----CeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCC----ce
Q 004290 72 THINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP----SA 141 (763)
Q Consensus 72 ~~v~iWd~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~----~~ 141 (763)
++|.+.|..+ .+.+..+ .-......+.++|+ |++++++ ..+.+|.|.|+........ ....+ ..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPD--GkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vva 369 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPD--GKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVA 369 (635)
T ss_pred CEEEEEECCccccCCcceEEEE--ECCCCccceEECCC--CCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEE
Confidence 4588888877 3455555 23456789999999 5665555 4599999999986331000 00011 11
Q ss_pred eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
... -.......+|.+ .++...|..-|..|..||+..
T Consensus 370 eve-vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EPE-LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eec-cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 111 122345678888 457888888999999999886
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.61 E-value=0.11 Score=36.09 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=28.9
Q ss_pred CcceEEEEeeCCCCeEEEEeCCCcEEEEcCCC
Q 004290 669 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 669 ~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~ 700 (763)
...|.+++|+|...+||.+..||.|.|+.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999843
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.34 E-value=11 Score=42.02 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCcEEEEEcCcCcEEEEEec
Q 004290 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLG 667 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g 667 (763)
.+.+|+.|+.||.++-+|.+||+++-.++-
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 557899999999999999999999988765
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.33 E-value=8.3 Score=41.61 Aligned_cols=35 Identities=6% Similarity=-0.013 Sum_probs=28.4
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004290 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
.++..++++|+ ++++|.-..+|.+.+....-.+.+
T Consensus 217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred CCeEEEEECCC-CCEEEEEECCCCEEEEECccccee
Confidence 47899999997 689999999999999876654433
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=3.5 Score=43.98 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=91.6
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-----EEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290 65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 65 Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-----~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
|.++..-..|.-.|++.|+.+... .-|.. |+-+.+.|+..+..| +.|-.|..|.-||++-... ..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--------~k 418 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--------NK 418 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--------ce
Confidence 446666677888999999999887 44444 777888887433333 3355688899999985321 11
Q ss_pred ceeeecc----cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCc
Q 004290 140 SALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215 (763)
Q Consensus 140 ~~~~~~h----~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (763)
+....+| .....|.+-. +..+||.||.+|.|++||- .+... -.-+|+-.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~A------------------------KTAlPgLG 471 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRA------------------------KTALPGLG 471 (644)
T ss_pred eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhh------------------------hhcccccC
Confidence 2222222 2234455544 3458999999999999995 33211 11234556
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
.+|..+..+.+ |++|++.+ +.++.+-|+.
T Consensus 472 ~~I~hVdvtad-GKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 472 DAIKHVDVTAD-GKWILATC-KTYLLLIDTL 500 (644)
T ss_pred CceeeEEeecc-CcEEEEec-ccEEEEEEEe
Confidence 78889999887 66666544 5677777764
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.25 E-value=7 Score=39.56 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=85.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004290 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
..++.|+.|..+| |.+++.........+ .+...|..+...|+ -+.|+.-+ |+.+.++++..............+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEecc--cCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999998 899998433333333 23344999999998 35555554 599999999864322110000000
Q ss_pred c----eeeecccCceeEEE-EecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCC
Q 004290 140 S----ALYQCHTRRVKKLA-VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (763)
Q Consensus 140 ~----~~~~~h~~~v~~l~-~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (763)
. .........+...+ -....+...+.+...++|.+|.......... ..+ +.+. -
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~---------~~~--------ke~~----l 137 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS---------KLL--------KEIS----L 137 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc---------cee--------EEEE----c
Confidence 0 00111222333333 1122233333444556898888776421100 000 0110 1
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004290 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
...+.+++|.+ +.+++|..++ ..+.|+.++..
T Consensus 138 p~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 138 PDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred CCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCc
Confidence 24677888884 4777777554 66788886654
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.12 E-value=2.3 Score=47.94 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC------CcEEEEECCCC
Q 004290 60 SKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF 127 (763)
Q Consensus 60 p~g~~Lasgs~D~------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d------g~I~iwd~~~~ 127 (763)
..+.+++.|+.++ .+..+|..++.......-.....-.+++...+ .+.++|+.| .++..||....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCCC
Confidence 3466778888773 57889988875443322233344556666654 789999998 34677887764
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCCC
Q 004290 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS 181 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----~i~iwd~~~~~ 181 (763)
. |..+..+...........+ ++.+.+.||.|| +|-.||.++.+
T Consensus 360 ~--------W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 360 Q--------WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred c--------eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence 3 2333344333322222222 668888999886 46667776654
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.03 E-value=3.8 Score=46.26 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=73.1
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCce-EEEE
Q 004290 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-FCTK 100 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V-~~v~ 100 (763)
+.+..++.....+.....+.... .-.++++. ++.+.++|+.| .++..||..+.+-.. +..-..... .+++
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeE
Confidence 44555554444444444444222 23334443 46788899988 357778887766333 211111111 1222
Q ss_pred EeeCCCCcEEEEEeCCCc-----EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----
Q 004290 101 FVPETSDELVVSGAGDAE-----VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----- 170 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg----- 170 (763)
.. + |.+.|.|+.||. |-.||..+.. +..+..+.. .....+...-++.+.+.||.++
T Consensus 378 ~l-~--g~iYavGG~dg~~~l~svE~YDp~~~~--------W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 378 VL-D--GKLYAVGGFDGEKSLNSVECYDPVTNK--------WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred EE-C--CEEEEEeccccccccccEEEecCCCCc--------ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 22 2 688999999865 6777777533 333443332 2222222222667888888654
Q ss_pred -cEEEEECCCCC
Q 004290 171 -TLRQHDFRQGS 181 (763)
Q Consensus 171 -~i~iwd~~~~~ 181 (763)
++..||..+++
T Consensus 444 ~sve~YDP~t~~ 455 (571)
T KOG4441|consen 444 NSVECYDPETNT 455 (571)
T ss_pred ceEEEEcCCCCc
Confidence 45667776654
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=1.8 Score=42.31 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=45.0
Q ss_pred EeCCCCCEEEEEeCC-----CcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004290 57 SWNSKGSLLISGSDD-----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 57 ~fsp~g~~Lasgs~D-----~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
.|||||.+|...-.| |.|=|||...+ ..+..+ ..|.-....+.|.+| |+.++.+. |-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEeC--Cceecc
Confidence 488999988755333 67889998855 345566 677777789999999 78888764 556655
No 379
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.79 E-value=0.54 Score=50.03 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=83.5
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
.|+.+.|.++..-||.|-..|.|.||.+...+.-.. .-..+-....|.+-. ..++.-.+-|+.......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccc--------ccCCCcceEEehhhCCcc
Confidence 588999999988899999999999998765432210 001111122222210 112233344444311100
Q ss_pred CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004290 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
+ .....|...+....++|++++.+. -.+++.|..+|.+.|.|+|.+.. ++...-. .....
T Consensus 72 ~-~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPav--------------I~~~~i~---~~~~~ 131 (395)
T PF08596_consen 72 L-KEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAV--------------IYNENIR---ESFLS 131 (395)
T ss_dssp --SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEE--------------EEEEEGG---G--T-
T ss_pred c-ccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeE--------------Eeecccc---ccccc
Confidence 0 000234455556689999999974 45999999999999999988752 2211000 00011
Q ss_pred CCCccceEEEEEeC----CCC---cEEEEEeCCCcEEEEeCC
Q 004290 212 PKQTLSLKSCDISS----TRP---HLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 212 ~~~~~~v~~i~~~p----~~~---~~l~sgs~Dg~i~iwd~~ 246 (763)
......++++.|.- +++ -++++|...|.+.+|.+.
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 22345677777752 112 378999999999999774
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=0.15 Score=58.32 Aligned_cols=73 Identities=33% Similarity=0.575 Sum_probs=56.1
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-CCcEEEEEeCCCcEEEEECC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg~I~iwd~~ 125 (763)
.++|++++|+.+|.+++.|-.+|.|.+||..+++.++.+ ..|..++.++-+.--. .+..++++..-|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 578999999999999999999999999999999988887 5666666555444311 1356777776665 66654
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.70 E-value=0.12 Score=48.73 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=59.4
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCC-cceEEEEeeCCCCeEEEE--eCCCcEEEEcCCCCCCc
Q 004290 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATS--GIDNTIKIWTPSASVPS 704 (763)
Q Consensus 636 s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~-~~V~~v~~sp~~~~laS~--s~D~~IrvW~~~~~~~~ 704 (763)
..++.+..+|+.||.|+-|+++.++.+...-.|. ..+..+..+..+..|+++ |.|..++.|++..-...
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 4567789999999999999999999999998898 788888888888888888 88999999988766543
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.67 E-value=5.4 Score=40.92 Aligned_cols=193 Identities=10% Similarity=0.068 Sum_probs=101.3
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc---CC-CCceEEEEEeeCCCCcEEEEEeC---------CCcE
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET---GH-SANVFCTKFVPETSDELVVSGAG---------DAEV 119 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~---~h-~~~V~~v~~~p~~~~~~l~s~s~---------dg~I 119 (763)
+.++..-..+..|+++.. -+.+++.+++..+..+.. +. ....+.+...|+ |.+.++... -..-
T Consensus 68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcc
Confidence 344333334445555433 467788776655333311 11 244567888888 566555433 0111
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
.+|.+... + .....+..+-..-+.|+|+|++..++++=+..+.|.-|++...... .........
T Consensus 144 ~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~~ 207 (307)
T COG3386 144 SLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFVD 207 (307)
T ss_pred eEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEEE
Confidence 34443310 1 1234444556667899999966555555556688888887641100 000011111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
.....+..-.++...+ +++.+++...| .|.+|+.. ++.+..+..+.
T Consensus 208 -----------~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-------------------- 254 (307)
T COG3386 208 -----------FDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-------------------- 254 (307)
T ss_pred -----------ccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEEECCC--------------------
Confidence 1112344556777776 56665555554 89999988 66554432210
Q ss_pred ccceeEEEEc-CCCCEEEEEeC
Q 004290 279 SLHLTHVTFS-PNGEEVLLSYS 299 (763)
Q Consensus 279 ~~~i~~v~~s-pdg~~l~~~s~ 299 (763)
..+++++|- |+.+.|++.+.
T Consensus 255 -~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 255 -KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -CCCccceEeCCCcCEEEEEec
Confidence 147777775 45566665554
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.63 E-value=1.9 Score=48.20 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=78.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
....-+.-|.-++.-+.-+...++.|||...+.....-.....+.|.++.|....+++.+++.+..+.|.++--...+.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy- 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY- 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh-
Confidence 3444455555555444444556799999998875554423457899999998776689999999999999997643111
Q ss_pred CCCCCCCCCceee--eccc-CceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 131 GLDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 131 ~~~~~~~~~~~~~--~~h~-~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
....+.+.+++.+ ..|+ .+|.+..|.+ ++.+++.+| ..+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence 1111223344433 2344 6799999998 555554433 57888863
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.2 Score=57.34 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=58.3
Q ss_pred ccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEee---CCCCeEEEEeCCCcEEEEcCCC
Q 004290 624 NVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH---PFDCVVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 624 ~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~s---p~~~~laS~s~D~~IrvW~~~~ 700 (763)
.+++++. |+.||++++.|-.+|.|.+||+.++++++.+.-|..++++|-++ .++..+.|+..-|. +|.+.=
T Consensus 131 ~~Vtsva----fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 131 GPVTSVA----FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred CcceeeE----ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 4466555 89999999999999999999999999999998887777776665 44567888877776 676543
Q ss_pred CC
Q 004290 701 SV 702 (763)
Q Consensus 701 ~~ 702 (763)
..
T Consensus 205 nk 206 (1206)
T KOG2079|consen 205 NK 206 (1206)
T ss_pred ch
Confidence 33
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=9 Score=37.76 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=122.1
Q ss_pred EEEEeCCCC-CEEEEEeCCCc-EEEEeCCCCeEEEEEccCCCCc--eEEEEEeeCCCCcEEEEEeC-----CCcEEEEEC
Q 004290 54 NAISWNSKG-SLLISGSDDTH-INVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAG-----DAEVRLFNL 124 (763)
Q Consensus 54 ~~l~fsp~g-~~Lasgs~D~~-v~iWd~~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~l~s~s~-----dg~I~iwd~ 124 (763)
..++|+|.- .-++.+-.-|+ ..++|..+.+.+.++. ..++. --.-.|+|+ |.+|...-. -|.|-|||.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~d--G~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPD--GRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCC--CcEEEeecCCCCCCCceEEEEec
Confidence 457788854 44555655555 4688988876655542 11111 112358999 677776543 367999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE-ECCCCCCCCCCCCCCcccceEEEecCCC
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
+.+- ..+..+..|.-....|.|.+ +++.++.+. |-|..- |....+.- -...+...++.+...+
T Consensus 148 r~~f---------qrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lN----ldsMePSlvlld~atG 211 (366)
T COG3490 148 REGF---------QRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELN----LDSMEPSLVLLDAATG 211 (366)
T ss_pred cccc---------ceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccc----hhhcCccEEEEecccc
Confidence 8532 33677888888889999999 557775553 556554 33222110 1112233455665555
Q ss_pred ceeeccCCC--CCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004290 204 AKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 204 ~~~~~~~~~--~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
....-...+ .+..+|..++..++ + .+..|+. .|. .....++-... .+.+.++.+.-......+..+
T Consensus 212 ~liekh~Lp~~l~~lSiRHld~g~d-g-tvwfgcQy~G~-----~~d~ppLvg~~---~~g~~l~~~~~pee~~~~~an- 280 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHLDIGRD-G-TVWFGCQYRGP-----RNDLPPLVGHF---RKGEPLEFLDLPEEQTAAFAN- 280 (366)
T ss_pred chhhhccCchhhhhcceeeeeeCCC-C-cEEEEEEeeCC-----CccCCcceeec---cCCCcCcccCCCHHHHHHHHh-
Confidence 554444444 45567888888886 3 3333331 110 00000000000 000111111000000011122
Q ss_pred ceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004290 281 HLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~ 312 (763)
.|-+|+...+..+++..+- .+...+||..++.
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 3778888876666666555 6678899999975
No 386
>PHA02713 hypothetical protein; Provisional
Probab=93.17 E-value=1.9 Score=48.60 Aligned_cols=147 Identities=6% Similarity=0.053 Sum_probs=75.3
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeCCC----------------
Q 004290 61 KGSLLISGSDDT-----HINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDA---------------- 117 (763)
Q Consensus 61 ~g~~Lasgs~D~-----~v~iWd~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---------------- 117 (763)
+|++.+.||.++ .|..||..+.+-.. .+. ...... +++ .-+ +.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp-~~r~~~-~~~-~~~--g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP-IALSSY-GMC-VLD--QYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC-cccccc-cEE-EEC--CEEEEEeCCCccccccccccccccccc
Confidence 577778888764 47889988765332 111 111111 121 123 67888887653
Q ss_pred -------cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC------cEEEEECCC-CCCC
Q 004290 118 -------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------TLRQHDFRQ-GSSC 183 (763)
Q Consensus 118 -------~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg------~i~iwd~~~-~~~~ 183 (763)
.|..||..+... ..+..+...... .+++.. ++.+.+.||.++ .+..||..+ .+-
T Consensus 426 ~~~~~~~~ve~YDP~td~W--------~~v~~m~~~r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W- 493 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIW--------ETLPNFWTGTIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW- 493 (557)
T ss_pred ccccccceEEEECCCCCeE--------eecCCCCccccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCe-
Confidence 466777775332 222333211111 122322 456777777542 356677765 331
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC--cEEEEeCCCCC
Q 004290 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--FARLYDRRMLP 249 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg--~i~iwd~~~~~ 249 (763)
..+...+........+.+ ++.+.++|+.++ .+..||..+.+
T Consensus 494 ----------------------~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 494 ----------------------ELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ----------------------eEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 111111212222222333 367999999888 67788877653
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.97 E-value=8.8 Score=36.67 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=88.9
Q ss_pred EEEEEeCCCcEEEEeCC--CCeEEEEEcc----CCCCceEEEEEeeCCCCcEEEEEeCC---------CcEEEEECCCCC
Q 004290 64 LLISGSDDTHINVWSYS--SRKLLHSIET----GHSANVFCTKFVPETSDELVVSGAGD---------AEVRLFNLSRFS 128 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~--~~~~~~~~~~----~h~~~V~~v~~~p~~~~~~l~s~s~d---------g~I~iwd~~~~~ 128 (763)
+.+.++..-.|.-||.. .-+..+++.. ......+.-..+|+ |++++-.-.| |.++.|-...
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~--Gryy~GtMad~~~~le~~~g~Ly~~~~~h-- 148 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPD--GRYYGGTMADFGDDLEPIGGELYSWLAGH-- 148 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCC--CceeeeeeccccccccccccEEEEeccCC--
Confidence 44444443344557733 2333333211 11345566677888 6774432222 3344444432
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE--CCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD--FRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
.+..+...-+--+.++|+.+...+.++-+.+-.|.-|| ..++.. .....+++++.....
T Consensus 149 ----------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~---------snr~~i~dlrk~~~~ 209 (310)
T KOG4499|consen 149 ----------QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL---------SNRKVIFDLRKSQPF 209 (310)
T ss_pred ----------CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc---------cCcceeEEeccCCCc
Confidence 12222223344567899875555566667788888888 444432 244566776654322
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004290 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
.-. ....+++..+ |+++++.-+.++|...|..+++.+.++
T Consensus 210 e~~-------~PDGm~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 210 ESL-------EPDGMTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred CCC-------CCCcceEccC-CcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 111 1123444554 788888889999999999999877655
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.75 E-value=9.6 Score=43.13 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=59.1
Q ss_pred CceEEEEeCCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-CcEEEEE
Q 004290 51 GCVNAISWNSKGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFN 123 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~I~iwd 123 (763)
..+...+++|+|+.+|... .|+.-.||=...+.....+..+. ....-.|+|+ |..|.+.... ..+++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspD--G~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLD--ADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCC--CCceEEEecCcceEEEec
Confidence 4678899999999887654 34444445332222223332333 3778899999 5766666532 1222222
Q ss_pred CCCCCCCCC--CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290 124 LSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (763)
Q Consensus 124 ~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i 174 (763)
... .++.. ...... ... ...+.|..+.|+|++.++.+.. ++.|++
T Consensus 426 ~~~-~gql~~~~vd~ge-~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 426 DPA-TGQLARTPVDASA-VAS--RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred cCC-CceEEEEeccCch-hhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 111 00000 000001 111 2356799999999554444433 466666
No 389
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.39 E-value=26 Score=40.63 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=54.0
Q ss_pred CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC---CCCCCCC-CCCCCce------e-eecccCceeEEEEecCC--C
Q 004290 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF---SGRGLDD-NAITPSA------L-YQCHTRRVKKLAVEVGN--P 160 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~-~~~~~~~------~-~~~h~~~v~~l~~sp~~--~ 160 (763)
..|..|.++|+ |.+|+..|..|. .|-.+... .+...+. ....|.. . ...+...|..+.|+|.+ +
T Consensus 85 f~v~~i~~n~~--g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPT--GSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCC--CCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 46788999999 798988887654 44444321 1100000 0001110 0 12345679999999963 4
Q ss_pred CEEEEEeCCCcEEEEECCCCCCC
Q 004290 161 HVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
..|+.-..|+++++||+...+.+
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCC
Confidence 67888889999999999866543
No 390
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.36 E-value=25 Score=41.37 Aligned_cols=235 Identities=11% Similarity=0.106 Sum_probs=116.6
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEc-------cCCCCceEEEEEeeCCCCcEEEEEeCC---CcEEEEECCCCCC--C-C
Q 004290 65 LISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--R-G 131 (763)
Q Consensus 65 Lasgs~D~~v~iWd~~~~~~~~~~~-------~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~I~iwd~~~~~~--~-~ 131 (763)
++.....|.|++|=.+......... ..-...|+..++.+..+|+.++.++.+ +.|++|.+.-.=+ . .
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 4455677899999663222111110 123456777777744336666665555 8898887653211 1 1
Q ss_pred CCCCCCCCceeee---------------------cccCceeEEEEec------CCCCEEEEEeC----CCcEEEEECCCC
Q 004290 132 LDDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASE----DGTLRQHDFRQG 180 (763)
Q Consensus 132 ~~~~~~~~~~~~~---------------------~h~~~v~~l~~sp------~~~~~l~s~s~----dg~i~iwd~~~~ 180 (763)
.+. ...|...+. .....++.+.|-+ ..+.++++.+. ...|..|.++..
T Consensus 145 ~d~-q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 145 IDP-QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred CCC-CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 111 000111110 0123566777754 12345555442 346999999886
Q ss_pred CCCCCCCCCCcccc-eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004290 181 SSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 181 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
.......-.+.... ...........-...........|.+++.... +..++..-.||+|.++|..+.+.+........
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 53211100000000 00000000000000111112345677777665 56899999999999999999877655411111
Q ss_pred CCCccccc-ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEE
Q 004290 260 PPPCVNYF-CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 304 (763)
Q Consensus 260 ~~~~~~~~-~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~ 304 (763)
++..+... ..+-..+ .-. .+..++|||.+.-++.-..++.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp--~~~-~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFP--CIQ-PPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred Cccccccccccccccc--cCC-CCceEEECcccceEEEEecCCCce
Confidence 11111111 1111111 001 356799999999999999888855
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.26 E-value=5.4 Score=46.00 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC---
Q 004290 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--- 290 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd--- 290 (763)
-...|..|.++|+ |.+++..|..|.+.+.=.+.......+......-.|........+.. ......|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~-g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPT-GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCC-CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc-CCCCceEEEEEEcCCCCC
Confidence 3468999999997 78888888876655543332211111111111112222211111211 122336999999996
Q ss_pred CCEEEEEeCCCeEEEEECCCCCccce
Q 004290 291 GEEVLLSYSGEHVYLMDVNHAGGRAM 316 (763)
Q Consensus 291 g~~l~~~s~d~~i~iwd~~~~~~~~~ 316 (763)
+.+|++-+.|+++++||+.....+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeE
Confidence 58999999999999999987554433
No 392
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.15 E-value=0.56 Score=45.51 Aligned_cols=65 Identities=15% Similarity=0.332 Sum_probs=51.2
Q ss_pred cccCCCCEEEEecCCCcEEEEEcCcCcEEEE-------Ee-------cCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCC
Q 004290 634 FLGQRGDYIASGSDDGRWFIWEKQTGRLIKM-------LL-------GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 699 (763)
Q Consensus 634 ~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~-------l~-------gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~ 699 (763)
|+..+++||+.-..+|.++|||+.+++++-. |. .....|..+..+.+|.-|++-+. |....|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 3677899999999999999999999886432 23 46678999999999987777764 667777654
No 393
>PHA03098 kelch-like protein; Provisional
Probab=92.08 E-value=9.2 Score=43.14 Aligned_cols=106 Identities=6% Similarity=-0.039 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeEEEEEccCC-CCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004290 61 KGSLLISGSDDT------HINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFS 128 (763)
Q Consensus 61 ~g~~Lasgs~D~------~v~iWd~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~ 128 (763)
++.+++.|+.++ .+..||..+.+... +..-. ...-.++.. -+ +.+++.|+.+ ..+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~-~~--~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV-FN--NRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE-EC--CEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456677776542 57788887765432 21111 111112222 23 5788888865 346778877543
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC------CcEEEEECCCCC
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGS 181 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~ 181 (763)
. .....+.... .-.+++.. ++.+++.||.+ ..+..||..+.+
T Consensus 370 W--------~~~~~lp~~r-~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 370 W--------REEPPLIFPR-YNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred e--------eeCCCcCcCC-ccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 2 1122221111 11122222 45677777632 357778876653
No 394
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.84 E-value=0.52 Score=31.70 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=27.3
Q ss_pred CceeEEEEecCCC--CEEEEEeCCCcEEEEECCCC
Q 004290 148 RRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 148 ~~v~~l~~sp~~~--~~l~s~s~dg~i~iwd~~~~ 180 (763)
+.|+++.|+|... .+|+-+-.-|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998665 68888878899999999953
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.51 E-value=27 Score=39.08 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.4
Q ss_pred CCCEEEEecCCCcEEEEEcCcCcEEEEEecC
Q 004290 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 668 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH 668 (763)
.+.+++.|+.||.++.+|.+||+++-..+-.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 5567788899999999999999999877654
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.49 E-value=2.3 Score=46.08 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=74.9
Q ss_pred CceEEEEeCCC----CCEEEEEeCCCcEEEEeCC-----CCeEEEEE--ccCCCCce--EEEEEeeCCCCcEEEEEeCCC
Q 004290 51 GCVNAISWNSK----GSLLISGSDDTHINVWSYS-----SRKLLHSI--ETGHSANV--FCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 51 ~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~-----~~~~~~~~--~~~h~~~V--~~v~~~p~~~~~~l~s~s~dg 117 (763)
..|..+.|.|- -..|+.....+.|.||.+. +.+.+..- .....-+| ..+-|+|. ...|+.-....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk--~~iL~VLT~~d 134 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK--KAILTVLTARD 134 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC--CceEEEEecCc
Confidence 46999999994 2234444566899999875 22322211 01112222 46789999 57777666555
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
.-.++++.....+ ++.-..-.+.|.|.+|.+++.+++++.+..=.-++||-....
T Consensus 135 vSV~~sV~~d~sr---------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 135 VSVLPSVHCDSSR---------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred eeEeeeeeeCCce---------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 5556777653321 222224578899999999777777777766678899865543
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.03 E-value=14 Score=39.22 Aligned_cols=213 Identities=13% Similarity=0.080 Sum_probs=85.4
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC----CeEEEEEcc--CCC----CceEEEEEeeCCCCcEEEEEeC------CCcEEEEE
Q 004290 61 KGSLLISGS-DDTHINVWSYSS----RKLLHSIET--GHS----ANVFCTKFVPETSDELVVSGAG------DAEVRLFN 123 (763)
Q Consensus 61 ~g~~Lasgs-~D~~v~iWd~~~----~~~~~~~~~--~h~----~~V~~v~~~p~~~~~~l~s~s~------dg~I~iwd 123 (763)
+.++|+..+ ....|.|.|+.+ .+..+.+.. -+. .....+.-.|+ |.+++|+-. -|.+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~--G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD--GRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC--ccEEEEeccCCCCCCCCcEEEEc
Confidence 356777666 678999999874 344444421 011 22233444566 778888532 24466777
Q ss_pred CCCCCCCCCCCCCCCCceeeec---ccCceeEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCC
Q 004290 124 LSRFSGRGLDDNAITPSALYQC---HTRRVKKLAVEVGNPHVVWSASE--------------------DGTLRQHDFRQG 180 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~l~s~s~--------------------dg~i~iwd~~~~ 180 (763)
-++. +....... ....-+.+-|.| ..+.++|... -.++.+||+.+.
T Consensus 164 ~~tf----------~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 164 GETF----------EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp TTT------------EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred Cccc----------cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 6642 22222221 123446677778 5567777542 347889998887
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe--CCCCcEEEEEeCCCcEEEEeC-CCCC----CCcc
Q 004290 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS--STRPHLLLVGGSDAFARLYDR-RMLP----PLTS 253 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--p~~~~~l~sgs~Dg~i~iwd~-~~~~----~~~~ 253 (763)
+.. ..+++... ..-+..+.|. |....-|+.+-....|..|-. ..++ .+..
T Consensus 233 ~~~------------Q~idLg~~-----------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ 289 (461)
T PF05694_consen 233 KLL------------QTIDLGEE-----------GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID 289 (461)
T ss_dssp EEE------------EEEES-TT-----------EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE
T ss_pred cEe------------eEEecCCC-----------CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE
Confidence 633 22222211 1123334443 332223333333444444433 3222 0101
Q ss_pred cCCCCCCCCccccc-ccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCcc
Q 004290 254 CQKRMSPPPCVNYF-CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR 314 (763)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~ 314 (763)
+ |+..+... .|.-+...+.-..-|+.+.+|.|.++|..+.. +|.|+.||+.....+
T Consensus 290 i-----p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 290 I-----PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp E-------EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred C-----CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 1 00000000 00000001111124899999999999998887 999999999996644
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.89 E-value=1 Score=30.38 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.7
Q ss_pred CceEEEEeCCCC---CEEEEEeCCCcEEEEeCCCC
Q 004290 51 GCVNAISWNSKG---SLLISGSDDTHINVWSYSSR 82 (763)
Q Consensus 51 ~~V~~l~fsp~g---~~Lasgs~D~~v~iWd~~~~ 82 (763)
+.|.+++|+|+. .+||-+-.-+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999844 58888888899999999853
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=3.3 Score=48.25 Aligned_cols=156 Identities=16% Similarity=0.079 Sum_probs=91.1
Q ss_pred CceEEEEEeeCCCCcEEE--EEeCCCcEEEEECCCCCCCCCCCCCCCCc---eeeecccCceeEEEEecCCCCEEEEEeC
Q 004290 94 ANVFCTKFVPETSDELVV--SGAGDAEVRLFNLSRFSGRGLDDNAITPS---ALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~--s~s~dg~I~iwd~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~sp~~~~~l~s~s~ 168 (763)
.++..+...++ +...+ ..+.+-.|..||++........ ...++ ...........++.|+|.-+...+.+..
T Consensus 101 ~pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~--~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 101 IPIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYE--TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred ccceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhh--hccccccccchhccccccccccccCCccchhhhhcc
Confidence 45555556666 34333 3344457899999863221100 00111 1111223456788999866667778888
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
|+.|++.-+...... +.. -.-....++++|+|. |+.+++|-..|++.-|-..-
T Consensus 177 dlsl~V~~~~~~~~~------------------------v~s-~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~l- 229 (1405)
T KOG3630|consen 177 DLSLRVKSTKQLAQN------------------------VTS-FPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSL- 229 (1405)
T ss_pred ccchhhhhhhhhhhh------------------------hcc-cCcccceeeEEeccc-cceeeEecCCCeEEEeeccc-
Confidence 999998876544311 000 112456899999996 89999999999998886542
Q ss_pred CCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 004290 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (763)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~ 297 (763)
+....++. |.. .....|.+|+|-....+|++=
T Consensus 230 eik~~ip~------------Pp~-----~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 230 EIKSEIPE------------PPV-----EENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeecccC------------CCc-----CCCcceeEEEEecceeEEEEe
Confidence 21111110 000 112369999998877766543
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=90.65 E-value=18 Score=40.10 Aligned_cols=105 Identities=10% Similarity=-0.055 Sum_probs=52.3
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEEccCCCCc-eEEEEEeeCCCCcEEEEEeCC--CcEEEEECCCCCCCCC
Q 004290 61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGL 132 (763)
Q Consensus 61 ~g~~Lasgs~D~-----~v~iWd~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~l~s~s~d--g~I~iwd~~~~~~~~~ 132 (763)
++.+++.|+.++ .+..||..+++....- .-.... -.++. .-+ +.+.+.|+.+ ..+..||..+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v-~~~--~~iYviGG~~~~~sve~ydp~~n~---- 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGV-PAN--NKLYVVGGLPNPTSVERWFHGDAA---- 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEE-EEC--CEEEEECCcCCCCceEEEECCCCe----
Confidence 456667787643 4667888776543221 111111 11222 234 5777777754 357788876422
Q ss_pred CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---cEEEEECCCC
Q 004290 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 180 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---~i~iwd~~~~ 180 (763)
+..+..+....... +++.. ++.+.+.||.++ .+..||.++.
T Consensus 343 ----W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 343 ----WVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred ----EEECCCCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCC
Confidence 22222232111111 22222 557777777653 3566776654
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.74 E-value=7.6 Score=37.08 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=83.4
Q ss_pred cCceEEEEeCCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 50 QGCVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D---------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
+...+.-..+|+|++.+---.| |.++.|-... .+..+ ...-.--+.++|+.+. ..+.+.-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i-~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELI-WNCVGISNGLAWDSDA-KKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cceee-ehhccCCccccccccC-cEEEEEccCceEEe
Confidence 3456666778999985422222 2233332211 11111 1111223578898774 45666677788898
Q ss_pred EEECCCCCCCCCCCCCCCCceeeec----ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004290 121 LFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
-||.....+....... +..++. .....-.++..- ++++++++-..++|...|..+++.+.
T Consensus 184 a~dyd~~tG~~snr~~---i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~------------ 247 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKV---IFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILL------------ 247 (310)
T ss_pred eeecCCCcccccCcce---eEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEE------------
Confidence 8996654444321111 111111 111223455554 66888888888999999999987431
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004290 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG 235 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs 235 (763)
. + .--+..|+|++|---+-.+|++.+
T Consensus 248 --e--------i---klPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 248 --E--------I---KLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred --E--------E---EcCCCceEEEEecCCCccEEEEEe
Confidence 0 0 111457899999754334555544
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.84 E-value=27 Score=34.87 Aligned_cols=218 Identities=12% Similarity=0.099 Sum_probs=114.0
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
+...+.++-|...+.+-..++.. .-+|..+=...+ +.+ .+-...|.++.|+|+ .+.|++......-.+|=-..
T Consensus 42 ~~~~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi-~g~~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~ 116 (316)
T COG3204 42 ATRVFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPI-LGETANVSSLTYNPD--TRTLFAVTNKPAAIVELTKE 116 (316)
T ss_pred cceeeeeEEEeccccccccccch--hhhccCCceEEEecccc-ccccccccceeeCCC--cceEEEecCCCceEEEEecC
Confidence 33444454444433333344443 445554322111 113 355566999999999 46666666555555554443
Q ss_pred CCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004290 127 FSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
++ .+.++ .+ -...-.|.+.- ++.+.++--.++.+.++.+....... .....
T Consensus 117 Gd----------lirtiPL~g-~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~--------------~~~~~- 169 (316)
T COG3204 117 GD----------LIRTIPLTG-FSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVI--------------SAKVQ- 169 (316)
T ss_pred Cc----------eEEEecccc-cCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEE--------------eccce-
Confidence 22 23332 22 12234566665 54566666668888888777654221 00000
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004290 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
...+..........-.++|+|. ...|..+-...-++||................+... ....-..|.+
T Consensus 170 ~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~-----------~~~f~~DvSg 237 (316)
T COG3204 170 KIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD-----------RDLFVLDVSG 237 (316)
T ss_pred EEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCcccccccccCcccc-----------cceEeecccc
Confidence 1122233333556778999997 467777877788888877643311111111001000 0000113788
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004290 285 VTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 285 v~~spd-g~~l~~~s~d~~i~iwd~~~ 310 (763)
+.|.+. +..|+.+..++.+.-.|...
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC
Confidence 889875 45555555577777777665
No 403
>PHA03098 kelch-like protein; Provisional
Probab=88.79 E-value=13 Score=41.81 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=34.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC------CcEEEEECCCCC
Q 004290 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRFS 128 (763)
Q Consensus 61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d------g~I~iwd~~~~~ 128 (763)
++++.+.||.+ ..+..||..+.+-...-...+...-.+++. -+ +.+++.|+.+ ..+..||+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VN--NLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-EC--CEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56777888765 347778887765322110011111112222 23 5777777742 457888887643
No 404
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.01 E-value=4.2 Score=43.32 Aligned_cols=100 Identities=11% Similarity=0.106 Sum_probs=58.7
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC---
Q 004290 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--- 291 (763)
Q Consensus 215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg--- 291 (763)
...|..+..++. |..++-.+.+|.+.++=.+....-..+........|...-....+... .....+..++|+|+.
T Consensus 103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-STSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CCceeeeeccccCCccCC
Confidence 456788889997 678888889998877653332221111111000011110000011111 122247889999975
Q ss_pred CEEEEEeCCCeEEEEECCCCCccce
Q 004290 292 EEVLLSYSGEHVYLMDVNHAGGRAM 316 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~~~~~~~ 316 (763)
..|+.-+.|++|++||+........
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhc
Confidence 6788899999999999988654433
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.91 E-value=34 Score=34.95 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
+-.+.++.+.-++||+++++++.-....-||.-... ..+. ..-...|..|.|.|+ +.+.+.+ ..|.|++=+...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TT
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCC--CCEEEEe-CCcEEEEccCCC
Confidence 345778899999999999888775556688864322 2222 345688999999999 5555544 888888877221
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i 174 (763)
. .... .+++.....-.-.+..|+|.+ +..+.+ ++..|++.+
T Consensus 217 ~-~~~w----~~~~~~~~~~~~~~ld~a~~~-~~~~wa-~gg~G~l~~ 257 (302)
T PF14870_consen 217 D-GETW----SEPIIPIKTNGYGILDLAYRP-PNEIWA-VGGSGTLLV 257 (302)
T ss_dssp E-EEEE-------B-TTSS--S-EEEEEESS-SS-EEE-EESTT-EEE
T ss_pred C-cccc----ccccCCcccCceeeEEEEecC-CCCEEE-EeCCccEEE
Confidence 0 0000 001111112233478899987 445555 445566544
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.77 E-value=6.5 Score=41.97 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=58.9
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee--CCCC--------
Q 004290 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP--ETSD-------- 107 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~-------- 107 (763)
........|......+.+|..+|++++.|+...=|.|.|+|+.++..++.. +|-.+.= +.|.. +...
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAq--c~wi~~~~~~~~~~~~~~~ 371 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQ--CGWIEVPEEGDRDRSNSNS 371 (415)
T ss_pred cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccce--EEEEEeecccccccccccc
Confidence 344555667777788999999999998888777799999999998877666 4544321 12211 1101
Q ss_pred ---------cEEEEEeCCCcEEEEECCC
Q 004290 108 ---------ELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 108 ---------~~l~s~s~dg~I~iwd~~~ 126 (763)
-+++-+-.-|.|.||.+++
T Consensus 372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~ 399 (415)
T PF14655_consen 372 PKSSSRFALFLVIYAPRRGILEVWSMRQ 399 (415)
T ss_pred cCCCCcceEEEEEEeccCCeEEEEecCC
Confidence 1344566788888888885
No 407
>PRK13616 lipoprotein LpqB; Provisional
Probab=87.76 E-value=16 Score=41.37 Aligned_cols=113 Identities=11% Similarity=0.031 Sum_probs=61.8
Q ss_pred eEEEEeCCCCCEEEEEeCC-CcEEEE-----------eCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 53 VNAISWNSKGSLLISGSDD-THINVW-----------SYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D-~~v~iW-----------d~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
.+.-.|+|+|+.|++.+.. ..+++. ++..+.... ...+.|..+.|+|+ |..++... ++.|.
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpD--G~RiA~i~-~g~v~ 471 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRD--GVRAAMII-GGKVY 471 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCC--CCEEEEEE-CCEEE
Confidence 7788999999888877533 223333 333222211 22457999999999 67777665 57777
Q ss_pred EEECCCC-CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004290 121 LFNLSRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 121 iwd~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
+--+... .+... . ..+.....+-...+.++.|.+ ++.++ .+..++...+|-+
T Consensus 472 Va~Vvr~~~G~~~-l--~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 472 LAVVEQTEDGQYA-L--TNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEEEeCCCCcee-e--cccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence 7443331 12110 0 111112223344468899998 44444 5554444444543
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.43 E-value=16 Score=38.82 Aligned_cols=73 Identities=18% Similarity=0.114 Sum_probs=41.8
Q ss_pred CceEEEEEeeCCCCcEEEEEe-----------CCC-cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCC
Q 004290 94 ANVFCTKFVPETSDELVVSGA-----------GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s-----------~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 161 (763)
.....|+|.++ |+++++-. ..+ .|.+++-..+.+.. .....+.......+.|++.+ ++
T Consensus 14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------d~~~vfa~~l~~p~Gi~~~~-~G- 83 (367)
T TIGR02604 14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------DKSNVFAEELSMVTGLAVAV-GG- 83 (367)
T ss_pred CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------ceeEEeecCCCCccceeEec-CC-
Confidence 45678899988 77777653 223 67777665444432 12334433445678899988 54
Q ss_pred EEEEEeCCCcEEEE-ECC
Q 004290 162 VVWSASEDGTLRQH-DFR 178 (763)
Q Consensus 162 ~l~s~s~dg~i~iw-d~~ 178 (763)
++++ ... .|..| |..
T Consensus 84 lyV~-~~~-~i~~~~d~~ 99 (367)
T TIGR02604 84 VYVA-TPP-DILFLRDKD 99 (367)
T ss_pred EEEe-CCC-eEEEEeCCC
Confidence 5543 443 34433 443
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.97 E-value=58 Score=36.55 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=42.0
Q ss_pred CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004290 648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
-|.+.=||+.||+.+=.........-+. ..-.+.+++.++.||.++.+|.++++++..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 4678889999999887665332212221 11244577778889999999999999887654
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.79 E-value=9.9 Score=40.22 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=67.3
Q ss_pred EEEEeCCCCCEEEEEeC--------------------CCcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCCC-CcEEE
Q 004290 54 NAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETS-DELVV 111 (763)
Q Consensus 54 ~~l~fsp~g~~Lasgs~--------------------D~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~~-~~~l~ 111 (763)
..+.|.|..+.++|... -.++.+||+.+.+.++++.-+..+ .+..++|..+.+ ..-++
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 45556676677777643 357999999999999998655444 467899986642 23455
Q ss_pred EEeCCCcEEEEECCC-CCCCCCCCC-----------CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 112 SGAGDAEVRLFNLSR-FSGRGLDDN-----------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 112 s~s~dg~I~iwd~~~-~~~~~~~~~-----------~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
.+....+|..|--.. +........ ....++.+..-..-|+.|..|.++..+.+++-.+|.|+.||+..
T Consensus 264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 555566666654422 111000000 00011222223456899999997766666777799999999998
Q ss_pred CCCC
Q 004290 180 GSSC 183 (763)
Q Consensus 180 ~~~~ 183 (763)
....
T Consensus 344 P~~P 347 (461)
T PF05694_consen 344 PFNP 347 (461)
T ss_dssp TTS-
T ss_pred CCCC
Confidence 7654
No 411
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.78 E-value=32 Score=34.11 Aligned_cols=142 Identities=11% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
+++..-.-.++...+||..+-+.+.++.. .+.=+.++ .+ +..|+.+.....|+++|..+.. ...
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f~----------~~~ 163 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SD--GKRLIMSDGSSRLYFLDPETFK----------EVR 163 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--EC--SSCEEEE-SSSEEEEE-TTT-S----------EEE
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEec--CCcceEEE--cC--CCEEEEECCccceEEECCcccc----------eEE
Confidence 34444556789999999999998888832 33445666 33 4566666667889999987632 122
Q ss_pred eeec--c---cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc---CCCC
Q 004290 142 LYQC--H---TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA---DPPK 213 (763)
Q Consensus 142 ~~~~--h---~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 213 (763)
.+.- . -..++-|.|. ++.+.+=.-....|...|..+++.. -.+++..-. .... ....
T Consensus 164 ~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~------------~~iDls~L~-~~~~~~~~~~~ 228 (264)
T PF05096_consen 164 TIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVV------------GWIDLSGLR-PEVGRDKSRQP 228 (264)
T ss_dssp EEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEE------------EEEE-HHHH-HHHTSTTST--
T ss_pred EEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEE------------EEEEhhHhh-hcccccccccc
Confidence 2211 1 2345667775 4556655556667777887777521 222221100 0000 0111
Q ss_pred CccceEEEEEeCCCCcEEEEE
Q 004290 214 QTLSLKSCDISSTRPHLLLVG 234 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sg 234 (763)
.....+.||++|..+.+++||
T Consensus 229 ~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 229 DDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTS-EEEEEEETTTTEEEEEE
T ss_pred cCCeeEeEeEeCCCCEEEEEe
Confidence 246789999999866666666
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.59 E-value=15 Score=40.25 Aligned_cols=158 Identities=10% Similarity=0.144 Sum_probs=85.1
Q ss_pred cCceEEEEeCCCCCEE-EEEe--CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCC--CcEEEEEeCCCcEEEEEC
Q 004290 50 QGCVNAISWNSKGSLL-ISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~L-asgs--~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~--~~~l~s~s~dg~I~iwd~ 124 (763)
-.+|..++|. ||+.+ .+.- .+|.++.=| ...+..| ..|..+.|.|-.. -..|+.......|.+|-+
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3588999997 56544 3432 233433322 2234444 5689999998521 224555566789999998
Q ss_pred CCCCCCCCCCCCCCCceeeeccc-----CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 125 SRFSGRGLDDNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
....... + +.+..-.++- --.....|+|. ..+++.-.....-.+++++... ..+..|
T Consensus 90 ~~s~~e~---~--K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvSV~~sV~~d~------------srVkaD 151 (671)
T PF15390_consen 90 CPSTTER---N--KLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVSVLPSVHCDS------------SRVKAD 151 (671)
T ss_pred ccCcccc---c--cceeeeeeeccCCcccCCCcccccCC-CceEEEEecCceeEeeeeeeCC------------ceEEEe
Confidence 7322111 0 1111111111 11245679994 4566555444443455655443 223333
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
+. ..+.|.|.+|.+|+.+++++.++.=.-+|||-.
T Consensus 152 i~------------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 152 IK------------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cc------------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 32 346789999999854444444554456788854
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.30 E-value=30 Score=34.44 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=67.2
Q ss_pred ceEEEEeCCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE-CCCCCC
Q 004290 52 CVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRFSG 129 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs-~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd-~~~~~~ 129 (763)
.+.+.+++++|..+|... .++.-.||-...+........+ ..+..-.|.++ +...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCC--CCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887655 2233334433333333333222 36778889998 67777777677777774 222221
Q ss_pred CCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEE--eCCCcEEEEECCC
Q 004290 130 RGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQ 179 (763)
Q Consensus 130 ~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~--s~dg~i~iwd~~~ 179 (763)
. .... ...-...|..+.++|++.++.+.. ..++.|.+=-+..
T Consensus 101 ~--------~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 101 E--------PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred e--------eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 1 1111 111112899999999665544443 2356777765543
No 414
>PRK10115 protease 2; Provisional
Probab=86.29 E-value=73 Score=37.09 Aligned_cols=71 Identities=3% Similarity=-0.035 Sum_probs=45.5
Q ss_pred ceEEEEeCCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-C-----CcEE
Q 004290 52 CVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-D-----AEVR 120 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs-----~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-d-----g~I~ 120 (763)
.+..+.|+|||++||.+. ....|++-|+.+|+.+.....+ . -..++|.++ ++.|+.... + ..|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D--~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWAND--SWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeC--CCEEEEEEecCCCCCCCEEE
Confidence 477789999999888653 2345889999888644332111 1 156999998 454444333 2 3577
Q ss_pred EEECCCC
Q 004290 121 LFNLSRF 127 (763)
Q Consensus 121 iwd~~~~ 127 (763)
.+++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 7777764
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.25 E-value=51 Score=37.75 Aligned_cols=160 Identities=10% Similarity=0.078 Sum_probs=94.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEE------EEc---------------cCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004290 62 GSLLISGSDDTHINVWSYSSRKLLH------SIE---------------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~------~~~---------------~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
..+|+.|. .+.|.||++..-.... .+. ....-.|+.|...--++...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67787766 4799999986432211 110 0011235555554433367899999999999
Q ss_pred EEECCCCC-----C-----CCCCCCCCCCceeeecccCceeEEEEe--cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004290 121 LFNLSRFS-----G-----RGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 121 iwd~~~~~-----~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 188 (763)
+|.+..-- . .........|...+. -...+.+++++ . ..++||+++....|.||-...........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~- 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHV- 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccccc-
Confidence 99774210 0 000001123334343 34589999998 5 55788888888888888665432110000
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--Cc---EEEEEeCCCcEEEEeCC
Q 004290 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH---LLLVGGSDAFARLYDRR 246 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~---~l~sgs~Dg~i~iwd~~ 246 (763)
. ...+..-|.+|+|-++. +. ++++++-.|.+.+|++.
T Consensus 205 -----------------~----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 205 -----------------P----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -----------------c----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 0 00134457788887753 22 78888999999998883
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.25 E-value=76 Score=37.22 Aligned_cols=78 Identities=13% Similarity=0.243 Sum_probs=53.5
Q ss_pred ccCC-CCEEEEec----------CCCcEEEEEcCcCcEEEEEecC--CcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCC
Q 004290 635 LGQR-GDYIASGS----------DDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 701 (763)
Q Consensus 635 ~s~d-~~~l~sgs----------~Dg~i~iWd~~tg~~~~~l~gH--~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~ 701 (763)
|..| +.|++.|. ..|+|.|+.+..+.-++.+.-| ++.|.++.- -++++|| |+...||++++..+
T Consensus 782 ~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 782 FTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLYEWTTE 858 (1096)
T ss_pred ecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEEEcccc
Confidence 4555 77888875 3688999998885555555444 344444432 2466776 46789999999999
Q ss_pred CCccccCCCCCCCh
Q 004290 702 VPSIVSGGAAGPDT 715 (763)
Q Consensus 702 ~~~~~~~g~~~~~~ 715 (763)
..+.....|..++.
T Consensus 859 ~eLr~e~~~~~~~~ 872 (1096)
T KOG1897|consen 859 RELRIECNISNPII 872 (1096)
T ss_pred ceehhhhcccCCeE
Confidence 88877776666654
No 417
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.98 E-value=41 Score=33.89 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=72.5
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEEcc--C--CCCceEEEEEeeCC----------CCcEE
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWSYS-------SRKLLHSIET--G--HSANVFCTKFVPET----------SDELV 110 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~-------~~~~~~~~~~--~--h~~~V~~v~~~p~~----------~~~~l 110 (763)
.-+.|+|+|.+.+.++...-+...+||.. ....+.++.. + .....+.+.|+..+ ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35689999999999998888999999986 1223444421 1 23467788887542 01247
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-cccCcee-EEEEecC-CCCEEEEE-eCCCcEEEEECCCC
Q 004290 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVK-KLAVEVG-NPHVVWSA-SEDGTLRQHDFRQG 180 (763)
Q Consensus 111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~-~l~~sp~-~~~~l~s~-s~dg~i~iwd~~~~ 180 (763)
+.+++||+|.-|......... ......+. .-.+.|+ .+++... .+.+|+.+ -..++|.+||-.-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~-----~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRM-----TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEEeCCceEEeecCcCCcccc-----cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 888999999999965321100 00011121 1123333 3555432 23444444 46789999985443
No 418
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=85.90 E-value=41 Score=33.85 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=82.5
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
++.|+.|..+| |.+++..... .+.... +...|..|...|. -+.++.-+ |+.++++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~---------~~~~i~--~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPS---------KPTRIL--KLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCc---------cceeEe--ecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccc
Confidence 68899999888 9999983211 112222 3334999999884 45554544 599999999876543211
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEE-EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccc
Q 004290 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 265 (763)
....... . ............+...+ -....+...++......|.+|.......... ...+
T Consensus 73 ~~~~~~~-~----------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------~~~k 133 (275)
T PF00780_consen 73 APLAFPK-S----------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------KLLK 133 (275)
T ss_pred ccccccc-c----------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------ceeE
Confidence 0000000 0 00000001112233333 1122233444444455888888775311100 0001
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
. ..+. ..+..++|. +..|+.|..++ ..+.|+.++.
T Consensus 134 e---~~lp------~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 134 E---ISLP------DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGS 168 (275)
T ss_pred E---EEcC------CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCC
Confidence 1 1111 158889998 55677776554 7888888743
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=5 Score=46.90 Aligned_cols=116 Identities=8% Similarity=-0.011 Sum_probs=75.9
Q ss_pred CceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeE--------EEE--EccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004290 51 GCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKL--------LHS--IETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~--------~~~--~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
-.|..+...+|++..+.. +.+-.|..||+++-.. ++. ........+.++.|+|.- ....+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccc
Confidence 356666667787765543 3444788999874211 111 101223456789999975 456777788999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004290 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
|++.-+...... ...+ .....+++++|+| .+..++.|-..|++..|-..
T Consensus 180 l~V~~~~~~~~~---------v~s~-p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 180 LRVKSTKQLAQN---------VTSF-PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhh---------hccc-CcccceeeEEecc-ccceeeEecCCCeEEEeecc
Confidence 999887753211 1222 2456789999999 56788899999999998654
No 420
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=84.73 E-value=26 Score=35.94 Aligned_cols=123 Identities=9% Similarity=0.076 Sum_probs=70.8
Q ss_pred CceEEEEeCCCCCEEEEEeC---------CCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE-eCCCcE
Q 004290 51 GCVNAISWNSKGSLLISGSD---------DTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEV 119 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~---------D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~-s~dg~I 119 (763)
..-+.+...|+|.+.++... -..-.||-+. .+..+..+ ..+-..-+.|+|+|+ ++.|..+ +..+.|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpD--g~tly~aDT~~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPD--GKTLYVADTPANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCC--CCEEEEEeCCCCeE
Confidence 34667888889987775433 0112344444 44555444 455566789999999 5555554 445778
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCCC
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGS 181 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-~i~iwd~~~~~ 181 (763)
.-|++....+... + ......+....+..-.++... ++.+.+++...| .|.+|+.. ++
T Consensus 188 ~r~~~d~~~g~~~--~-~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 188 HRYDLDPATGPIG--G-RRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred EEEecCcccCccC--C-cceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-Cc
Confidence 8887763111110 0 011222233456677777776 455554444444 89999877 54
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.63 E-value=0.19 Score=52.51 Aligned_cols=151 Identities=9% Similarity=0.067 Sum_probs=97.2
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
|-..-....|-|.+.-|+.++.+..|..||-. ++..... .-++....++|..+. +..++.+-..+.+.+||+.+..
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhh
Confidence 33444456778877778888888999999954 3433333 345567788888873 4455666778999999998632
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004290 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
.+. +..-..|.... +.|++ +...++.+...|.+.+++..+.+...
T Consensus 109 tqq--------LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii------------------------ 153 (615)
T KOG2247|consen 109 TQQ--------LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII------------------------ 153 (615)
T ss_pred HHH--------HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh------------------------
Confidence 111 11111122222 68888 66677778888999999987765331
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEE
Q 004290 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~ 241 (763)
....|...++++++.+. ++.+.++.|..+.
T Consensus 154 -v~Gkh~RRgtq~av~lE--d~vil~dcd~~L~ 183 (615)
T KOG2247|consen 154 -VMGKHQRRGTQIAVTLE--DYVILCDCDNTLS 183 (615)
T ss_pred -hhcccccceeEEEeccc--ceeeecCcHHHHH
Confidence 11125667888889885 4666666665443
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.37 E-value=5.9 Score=38.46 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=44.2
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE------cc-------CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 58 fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~------~~-------~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
+..++++|+.-..+|.+++||+.+++.+..- .. .....|..+.+..+ |.-|++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence 3457889999999999999999998765332 11 24456666777655 55555544 466677766
Q ss_pred C
Q 004290 125 S 125 (763)
Q Consensus 125 ~ 125 (763)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 5
No 423
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.35 E-value=3 Score=41.96 Aligned_cols=111 Identities=22% Similarity=0.146 Sum_probs=84.5
Q ss_pred hHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchh
Q 004290 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (763)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~ 443 (763)
..+.+.++..+.+|+ |-.+|.+|+..++..+-. .+++.||+.++++-.-. ..|-.||..++.++....++
T Consensus 98 SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~F---A~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSF---AQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHH---HHHHHhHHHHHHhhHHHHHH
Confidence 346777777888888 668999999888766533 45688999999864422 25668999999999999999
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004290 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (763)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 484 (763)
..+...+.+.|+...++..-......+-|....+-...+++
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 99999999999998888866666666777766655444444
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=84.35 E-value=33 Score=37.98 Aligned_cols=104 Identities=7% Similarity=-0.052 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCC
Q 004290 61 KGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDN 135 (763)
Q Consensus 61 ~g~~Lasgs~D--~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~ 135 (763)
+|.+.+.|+.+ ..+..||..+++-...-.-.....-.+++ .-+ +.+.+.|+.++ .+..||..+...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~--g~IYviGG~~~~~~~ve~ydp~~~~W------ 388 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SIN--NVIYVIGGHSETDTTTEYLLPNHDQW------ 388 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EEC--CEEEEecCcCCCCccEEEEeCCCCEE------
Confidence 56777788754 35778887765432211001111111222 223 57888887653 467888875332
Q ss_pred CCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 136 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
.....+....... +++. - ++.+.+.| |.+.+||.++.+
T Consensus 389 --~~~~~m~~~r~~~-~~~~-~-~~~IYv~G---G~~e~ydp~~~~ 426 (480)
T PHA02790 389 --QFGPSTYYPHYKS-CALV-F-GRRLFLVG---RNAEFYCESSNT 426 (480)
T ss_pred --EeCCCCCCccccc-eEEE-E-CCEEEEEC---CceEEecCCCCc
Confidence 1122221111111 2222 2 44666666 356778876554
No 425
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.76 E-value=95 Score=36.74 Aligned_cols=91 Identities=8% Similarity=0.076 Sum_probs=56.4
Q ss_pred CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc-c-CCCCCccceeEEEEcCCC
Q 004290 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-S-EHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~i~~v~~spdg 291 (763)
...+...++|+|.....||+....|...|||+........-... ..... .+.+ . ...+ .....+.|.++-
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-----~~~~~-~gsi~~d~~e~--s~w~rI~W~~~~ 215 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-----LSRNI-SGSIIFDPEEL--SNWKRILWVSDS 215 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-----eccCC-CccccCCCccc--CcceeeEecCCC
Confidence 34567899999988889999999999999999322211110000 00000 0111 0 0112 247789999988
Q ss_pred CEEEEEeCCCeEEEEECCCCCc
Q 004290 292 EEVLLSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~~~~ 313 (763)
..|+++.. ..+.++|+.+...
T Consensus 216 ~~lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 216 NRLLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred CEEEEEcC-CceEEEECCCCCc
Confidence 87777654 4678888887543
No 426
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.92 E-value=20 Score=37.49 Aligned_cols=123 Identities=23% Similarity=0.157 Sum_probs=88.2
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccc---------hhhhhHHHHHhhccccccchhhhHHhHHHHhc
Q 004290 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR---------HECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~ 435 (763)
.....++..+..|+ |..|+..|..++............ ..++-|.+.-+++-. +.-.|+..|..++.
T Consensus 210 ~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~---~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 210 RKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK---EYKEAIESCNKVLE 285 (397)
T ss_pred HHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh---hHHHHHHHHHHHHh
Confidence 34445555566666 667888888877655543333322 125556665555532 22367899999999
Q ss_pred CCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004290 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 491 (763)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 491 (763)
++|.+.++.++..+++..++.+..+-..+.......|+..........+..++...
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877766666555555433
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.92 E-value=29 Score=36.93 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=57.0
Q ss_pred CceEEEEeCCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce--EEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004290 51 GCVNAISWNSKGSLLISGS-----------DDT-HINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs-----------~D~-~v~iWd~~~--~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+ .........+++.++ + ++++ .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~--G-lyV~-~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVG--G-VYVA-T 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecC--C-EEEe-C
Confidence 4567899999999887753 223 677776543 32 23344 233345688999988 6 5554 4
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeec----ccCceeEEEEecCCCCEEEEEe
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~s~s 167 (763)
.....++.|... .+... ......+..+.. +......++|.|+ +.+.++.+
T Consensus 89 ~~~i~~~~d~~g-dg~ad-~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G 142 (367)
T TIGR02604 89 PPDILFLRDKDG-DDKAD-GEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHG 142 (367)
T ss_pred CCeEEEEeCCCC-CCCCC-CccEEEEEccCCCCCcccccccCceECCC-CCEEEecc
Confidence 443333334432 22110 000011112221 2345778999994 45555544
No 428
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.89 E-value=3.1 Score=47.12 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=46.1
Q ss_pred CCCCEEEEecCCCcEEEEEcCc----CcEE-EEEecC---------------------CcceEEEEeeC----CCCeEEE
Q 004290 637 QRGDYIASGSDDGRWFIWEKQT----GRLI-KMLLGD---------------------EAVVNCVQCHP----FDCVVAT 686 (763)
Q Consensus 637 ~d~~~l~sgs~Dg~i~iWd~~t----g~~~-~~l~gH---------------------~~~V~~v~~sp----~~~~laS 686 (763)
++...++.+..||.+....... +... ..+..+ ...+..++.++ +..+|+|
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556777777888888877764 3222 222222 24577788887 7789999
Q ss_pred EeCCCcEEEEcCCCCCCcccc
Q 004290 687 SGIDNTIKIWTPSASVPSIVS 707 (763)
Q Consensus 687 ~s~D~~IrvW~~~~~~~~~~~ 707 (763)
.+.|+++|+|++.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997665
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.73 E-value=5.7 Score=26.42 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCCCEEEEec-CCCcEEEEEcCcCcEEEEEec
Q 004290 637 QRGDYIASGS-DDGRWFIWEKQTGRLIKMLLG 667 (763)
Q Consensus 637 ~d~~~l~sgs-~Dg~i~iWd~~tg~~~~~l~g 667 (763)
||+++|+.+. .+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666654 578999999999999888765
No 430
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.15 E-value=4.6 Score=43.83 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=46.0
Q ss_pred ccCCCCEEEEe-cCC----CcEEEEEcCcCcEEEE-EecCCcceEEEEeeCCCCeEEEEeCCC-----------cEEEEc
Q 004290 635 LGQRGDYIASG-SDD----GRWFIWEKQTGRLIKM-LLGDEAVVNCVQCHPFDCVVATSGIDN-----------TIKIWT 697 (763)
Q Consensus 635 ~s~d~~~l~sg-s~D----g~i~iWd~~tg~~~~~-l~gH~~~V~~v~~sp~~~~laS~s~D~-----------~IrvW~ 697 (763)
+||||++||-+ +.. ..|+|.|+++|+.+.. +.+ .. -..+.|.+++..|+-...|. .|++|.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 89999998755 333 4599999999988763 332 11 12399999988666555433 388888
Q ss_pred CCCCCC
Q 004290 698 PSASVP 703 (763)
Q Consensus 698 ~~~~~~ 703 (763)
+.+...
T Consensus 209 ~gt~~~ 214 (414)
T PF02897_consen 209 LGTPQS 214 (414)
T ss_dssp TTS-GG
T ss_pred CCCChH
Confidence 877654
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.60 E-value=1.4 Score=49.86 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=71.0
Q ss_pred eccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCC--CCeEEE----EEccCCCCceEEEEEeeCC-CCcEEEEEeCCC
Q 004290 46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS--SRKLLH----SIETGHSANVFCTKFVPET-SDELVVSGAGDA 117 (763)
Q Consensus 46 l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~--~~~~~~----~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg 117 (763)
++|..+.|-.+.|-. +...++ -.-|.+.|||+. .|+... +........+.-+.|.|-- +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 456778888888853 222232 223578899875 343222 2213334445556666521 146777777889
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE-----------ecCCCCEEEEEeCCCcEEEEEC
Q 004290 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-----------EVGNPHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----------sp~~~~~l~s~s~dg~i~iwd~ 177 (763)
.|++...++.. ...+.+|...+..++| +| +|..|+.++.||.++.|-+
T Consensus 206 ~i~lL~~~ra~-----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 206 EIRLLNINRAL-----------RSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeEeeechHH-----------HHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence 99998887532 3445568777776665 56 5567777777777776654
No 432
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.24 E-value=24 Score=42.65 Aligned_cols=66 Identities=8% Similarity=-0.069 Sum_probs=39.6
Q ss_pred CCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEee---CC-CCeEEEEeCCCcEEEEcCCCCCCc
Q 004290 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH---PF-DCVVATSGIDNTIKIWTPSASVPS 704 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~s---p~-~~~laS~s~D~~IrvW~~~~~~~~ 704 (763)
...+++.++++ -++++++.+..+.....-|.-++..++.- .. ...+++...+|.+.+..+..-.+.
T Consensus 723 ~~~~~~i~~e~-~~~v~~~~~q~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~g~i~~~slp~Lre~ 792 (993)
T KOG1983|consen 723 IEVPTLICGES-AIRVFSVPAQQCKELQLIHEAPVVGISVLDGISKPEPSLDLLDANGHISKHSLPSLREE 792 (993)
T ss_pred cccceEEecCC-ccceecccccccccceeeccccceeeeeeecccCccceeeEeecCCCccceecchhhhh
Confidence 34566666644 58888888777666665565544333332 12 356677777777776666554433
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.18 E-value=0.52 Score=52.99 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=49.6
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEe-----------eCCCCeEEEEeCCCcEEEEcC
Q 004290 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQC-----------HPFDCVVATSGIDNTIKIWTP 698 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~-----------sp~~~~laS~s~D~~IrvW~~ 698 (763)
|-++.-|+..|-+++.|++-...+... ..+++|..+++.++| ||||+.||++..||.|+.|.+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 566778999999999998776665443 566779888887765 788899999999998888765
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=78.70 E-value=34 Score=39.06 Aligned_cols=117 Identities=13% Similarity=0.169 Sum_probs=77.2
Q ss_pred ceEEEEeCC--CCCEEEEEeCCCcEEEEeCCC-------C----eE---E----EEEccCCCCceEEEEEe--eCCCCcE
Q 004290 52 CVNAISWNS--KGSLLISGSDDTHINVWSYSS-------R----KL---L----HSIETGHSANVFCTKFV--PETSDEL 109 (763)
Q Consensus 52 ~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~-------~----~~---~----~~~~~~h~~~V~~v~~~--p~~~~~~ 109 (763)
.|+-|.... +.+.|+.|.+||.|.+|..++ . +. . .-+.......+++++++ .. .++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~--~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK--SRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc--ceE
Confidence 456665544 457899999999999997531 1 00 0 00111234578999998 66 588
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC--CC---EEEEEeCCCcEEEEEC
Q 004290 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PH---VVWSASEDGTLRQHDF 177 (763)
Q Consensus 110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~---~l~s~s~dg~i~iwd~ 177 (763)
||.++....|.||-+.....+.. ...-..|...|-+|.|-+++ +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~-------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFY-------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccc-------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888899887765322111 11111266778999998744 22 7778889999999888
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.31 E-value=77 Score=34.33 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=24.7
Q ss_pred eEEEEEeCCC--CcEEEEEeCCCcEEEEeCCCCCCC
Q 004290 218 LKSCDISSTR--PHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 218 v~~i~~~p~~--~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
+.-++|+|+. ...|+.-++|.+||+||+.....+
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 3456677764 357778888999999999876544
No 436
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=78.03 E-value=35 Score=36.07 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=87.7
Q ss_pred HHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHH
Q 004290 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (763)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~ 445 (763)
+...+...+..+. +..++..+..++...+.. ..++.+++.+++.. ++...|+.++..++.++|....+++
T Consensus 5 l~~~a~~a~~~~~-~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~---g~~~eAl~~~~~Al~l~P~~~~a~~ 74 (356)
T PLN03088 5 LEDKAKEAFVDDD-FALAVDLYTQAIDLDPNN------AELYADRAQANIKL---GNFTEAVADANKAIELDPSLAKAYL 74 (356)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 4555666666665 778999999999866543 34667777777654 4566788899999999999999999
Q ss_pred HHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004290 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (763)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 488 (763)
.+...+..++++.++...+.......|....+..........+
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877655554444444
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.01 E-value=13 Score=35.91 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=68.6
Q ss_pred hhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhc-cccccchhhhHHhHHHHhcCCCCC
Q 004290 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDSSS 440 (763)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~a~~d~~~~~~~~~~~ 440 (763)
...++.+.++..+.+. .|--+|..|..+|...+.. ..+|.+|+.-.++ ..|. .+..||..+++++|+.
T Consensus 9 ~a~qlkE~gnk~f~~k-~y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~~~----~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPK-RYDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKHWE----PVEEDCRRALQLDPNL 77 (284)
T ss_pred HHHHHHhccccccchh-hhchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhhhh----hhhhhHHHHHhcChHH
Confidence 3445555555555443 3667888999998876553 4578889887776 3444 5678999999999999
Q ss_pred chhHHHHHHHHHHhCchHHHHHHHH
Q 004290 441 FRAHLYMSEALEQLCKYKEALDFAI 465 (763)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~~~~ 465 (763)
+++|++....+.....+.++...+.
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHH
Confidence 9999999999888887776665443
No 438
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.03 E-value=1.6e+02 Score=34.67 Aligned_cols=96 Identities=9% Similarity=0.074 Sum_probs=58.5
Q ss_pred ccchhhhhccccceeeccccCce--------EEEEeCC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC------
Q 004290 31 QMHSSLVRRLSQERELEGHQGCV--------NAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA------ 94 (763)
Q Consensus 31 ~~~~~~~~~~~~~~~l~gH~~~V--------~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~------ 94 (763)
+|....++++++.-+++ .+.+ .....+| .+..|..++.++.|.-.|..+|+.+-++......
T Consensus 155 qIn~~NV~~L~~aWt~~--tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~ 232 (764)
T TIGR03074 155 QINPDNVGNLKVAWTYH--TGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH 232 (764)
T ss_pred ccCcccccCceEEEEEE--CCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence 45445566666665553 2211 1234445 3567777888899999999999998887322110
Q ss_pred -ceEEEEEeeC--------------CCCcEEEEEeCCCcEEEEECCCCC
Q 004290 95 -NVFCTKFVPE--------------TSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 95 -~V~~v~~~p~--------------~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
....+.+... ..+..++.++.|+.|.-.|..+++
T Consensus 233 ~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk 281 (764)
T TIGR03074 233 QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGK 281 (764)
T ss_pred ccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCC
Confidence 1223333321 113478888889999999988754
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.87 E-value=29 Score=33.04 Aligned_cols=112 Identities=10% Similarity=0.101 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEeCCC--CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC------cEEEE-ECCCC--CCCC
Q 004290 63 SLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA------EVRLF-NLSRF--SGRG 131 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg------~I~iw-d~~~~--~~~~ 131 (763)
+.|+.+...+.|.+|++.+ .+.+.+| .--+.|..+.++.. |++|+|--.+. .+|+| |.+.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccc--cceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 4554445567899999983 3456666 23488999999999 89999964432 45553 22211 1100
Q ss_pred C---------CCC----CCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290 132 L---------DDN----AITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 132 ~---------~~~----~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
. ... ....+..++ .-..++.+++..|..|++++.+ ++++.+|-+...
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 0 000 000011110 1245788888888888887443 478999987654
No 440
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.28 E-value=9.9 Score=40.47 Aligned_cols=91 Identities=24% Similarity=0.214 Sum_probs=72.4
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhc-cccccchhhhHHhHHHHhcCCCCCc
Q 004290 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDSSSF 441 (763)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~a~~d~~~~~~~~~~~~ 441 (763)
...++..++..+..++ |-.+|..|+.+|..++.+ +..|.||+..+.. ..|. -...||..++.++|..+
T Consensus 115 A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~----~Vied~TkALEl~P~Y~ 183 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWE----KVIEDCTKALELNPDYV 183 (606)
T ss_pred HHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHH----HHHHHHHHHhhcCcHHH
Confidence 3345555666666665 788999999999988775 5578899988864 4555 35689999999999999
Q ss_pred hhHHHHHHHHHHhCchHHHHHHH
Q 004290 442 RAHLYMSEALEQLCKYKEALDFA 464 (763)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~~~~ 464 (763)
++.+++..+...++...+++.-+
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhh
Confidence 99999999999999999887443
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.15 E-value=1.2e+02 Score=32.72 Aligned_cols=165 Identities=8% Similarity=0.103 Sum_probs=88.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe---cCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE---VGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---p~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
...|++|+..|.++||+........ ..+..-..-..+|..|..- +......++.=.-..+.+|.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~------~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQP------EDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCC------ccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 5799999999999999996432111 1111122345778777653 222222223345577888887432211
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004290 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
...+.......++... ++..........|.... ...|.+=+.||.+.+|+-+....
T Consensus 111 --~~~g~~~~L~~~yeh~---------l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f------------ 167 (418)
T PF14727_consen 111 --VEHGNQYQLELIYEHS---------LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF------------ 167 (418)
T ss_pred --cccCcEEEEEEEEEEe---------cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE------------
Confidence 0000011111111110 01111122222332221 36888999999999999875321
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
..+.|..+. -.-++|++....+++++.+..+..|....
T Consensus 168 --~~~lp~~ll--------PgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 168 --SRFLPDFLL--------PGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred --EEEcCCCCC--------CcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 111122111 22367888888899999999999997654
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.55 E-value=17 Score=33.74 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=28.2
Q ss_pred ceEEEEeeCCC------CeEEEEeCCCcEEEEcCCCCC
Q 004290 671 VVNCVQCHPFD------CVVATSGIDNTIKIWTPSASV 702 (763)
Q Consensus 671 ~V~~v~~sp~~------~~laS~s~D~~IrvW~~~~~~ 702 (763)
.|..++|||.| ++||.-..++.|.||......
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~ 124 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP 124 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc
Confidence 79999999965 599999999999999988753
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.40 E-value=16 Score=38.44 Aligned_cols=119 Identities=11% Similarity=0.180 Sum_probs=76.8
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004290 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
..++|.++.||+|.+.||.--.|++|.+.+....+...... +..+..|....|... .-+|--+. .-+-+|-+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s---~e~A~i~~-~G~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS---TEIAFITD-QGIEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC---eeEEEEec-CCeEEEEEc
Confidence 46799999999999999999999999999985433221111 223456888899876 44555443 346677665
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCC
Q 004290 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQG 180 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~ 180 (763)
... +.++..+.|.-.|+--.|.++..-.+.+.+ ..+++.-+-++++
T Consensus 141 pek---------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 141 PEK---------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhh---------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 321 335666778888888888884433333333 3444544555543
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.83 E-value=14 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCCccceEeecCCCCeeeee
Q 004290 289 PNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (763)
Q Consensus 289 pdg~~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 329 (763)
|++++|+++.. ++.|.++|..+.. .......+..+..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~-~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK-VIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe-EEEEEECCCCCceEEe
Confidence 67887777665 8899999998754 3333333444444443
No 445
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.50 E-value=26 Score=37.88 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=84.3
Q ss_pred HHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHHHH
Q 004290 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (763)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~~~ 448 (763)
.++..+..+. |..++..|..+|..-+.+ +.+|+||+..+++-. ..-.++.||..++.++|...++.++-.
T Consensus 364 kGne~Fk~gd-y~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 364 KGNEAFKKGD-YPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred HHHHHHhccC-HHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 3455555555 678999999988877554 558999999998754 344678999999999999999999888
Q ss_pred HHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004290 449 EALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (763)
Q Consensus 449 ~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 486 (763)
.++..+.++..+.....-....-|+...+..+......
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 89999999998888877777788887777665554433
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=72.37 E-value=87 Score=33.83 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=78.3
Q ss_pred chhhhhccccceeeccccCceEEEEeCCCC--------CEEEEEeCCCcEEEEeCC-CCeEEEEEccCCCCceEEEEEee
Q 004290 33 HSSLVRRLSQERELEGHQGCVNAISWNSKG--------SLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 33 ~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g--------~~Lasgs~D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
+.-.+++++++-+..-|.+- -+.|.|+. ..| .|-.+..|.-.|.. .|..+... .....++.-.|+.
T Consensus 493 ykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v~--esKdY~tKn~Fss 567 (776)
T COG5167 493 YKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKVV--ESKDYKTKNKFSS 567 (776)
T ss_pred eeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceeee--eehhccccccccc
Confidence 33347788888888887765 57788843 234 44445555555654 23222222 1122222223332
Q ss_pred C--CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004290 104 E--TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 104 ~--~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
. ....+++.++..|-|++||--.. .....+.+....|..|..+.++..+|+|| ...+.+-|++-.
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRig~----------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ik 634 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRIGK----------RAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPIK 634 (776)
T ss_pred cccccCceEEEecCCCceeeehhhcc----------hhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecccc
Confidence 1 01469999999999999996531 11334566778899999998555555554 357888887643
No 447
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.89 E-value=1.5e+02 Score=31.41 Aligned_cols=114 Identities=8% Similarity=-0.044 Sum_probs=62.0
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC------------------
Q 004290 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------------------ 116 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d------------------ 116 (763)
...++|+.+.|+-......|+--|+++.+....+ ......+-...|..+.++..++-.-..
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 4556788888776666678899999988754333 445566666788766545555433211
Q ss_pred ----CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC---CC-cEEEEECCCC
Q 004290 117 ----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DG-TLRQHDFRQG 180 (763)
Q Consensus 117 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~---dg-~i~iwd~~~~ 180 (763)
..|.--|+.+++ ...+..-...+..+.|+|.++.+|+-|-+ +. .-+||-+++.
T Consensus 164 a~p~~~i~~idl~tG~-----------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGE-----------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp C---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred hCCCceEEEEECCCCc-----------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 112222333211 23333345667889999999888877654 33 2366766543
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.82 E-value=1.7e+02 Score=32.02 Aligned_cols=55 Identities=7% Similarity=0.060 Sum_probs=39.7
Q ss_pred CCCEEEEecCCCcEEEEEcCcC------cEEEEEecCCcceEEEEeeCCC-CeEEEEeCCCcE
Q 004290 638 RGDYIASGSDDGRWFIWEKQTG------RLIKMLLGDEAVVNCVQCHPFD-CVVATSGIDNTI 693 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~tg------~~~~~l~gH~~~V~~v~~sp~~-~~laS~s~D~~I 693 (763)
+|.+|+++-..+.|...+++.. +....|.. .++|.+|+-.||+ .+.+.....|.+
T Consensus 368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~ 429 (454)
T TIGR03606 368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNV 429 (454)
T ss_pred CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcc
Confidence 7889999999999988888643 22334444 6799999999997 655544455554
No 449
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.78 E-value=9.9 Score=23.64 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.2
Q ss_pred CEEEEecCCCcEEEEEcCcCcEEEE
Q 004290 640 DYIASGSDDGRWFIWEKQTGRLIKM 664 (763)
Q Consensus 640 ~~l~sgs~Dg~i~iWd~~tg~~~~~ 664 (763)
..|+.++.+|.++..|.++|+.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677888999999999999998754
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.52 E-value=2.1e+02 Score=32.74 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=38.1
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
..|+|+++. |..+..+.-.|. .+-.+.|+.+ ..|++...+|++++|++--
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~---eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG-ELIGMGWSDD---EELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC-CeeeecccCC---ceEEEEeccceEEEeecch
Confidence 458888864 666665533454 7889999987 6888889999999999873
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.04 E-value=32 Score=36.79 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=87.7
Q ss_pred HHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHH
Q 004290 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (763)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~ 446 (763)
...++..+.... +..+|..|+.+|...+.. ...+.+|+.+.++-+ +...|++|+..++.++|...++.++
T Consensus 8 k~ean~~l~~~~-fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e---~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 8 KNEANEALKDKV-FDVAVDLYSKAIELDPNC------AIYFANRALAHLKVE---SFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hhHHhhhcccch-HHHHHHHHHHHHhcCCcc------eeeechhhhhheeec---hhhhHHHHHHhhhhcCchhhheeee
Confidence 334444444443 778999999999877654 346778888877754 4557899999999999999999888
Q ss_pred HHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcc
Q 004290 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKN 496 (763)
Q Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 496 (763)
...+...+.+..++...+..-...-|+...+-......+..+..-..++.
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 88888888888888877777777788877766666655555555444333
No 452
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=67.75 E-value=1.8e+02 Score=31.32 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=90.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe-----EEEEEccCCCCceEEEEEe---eCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004290 61 KGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV---PETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~-----~~~~~~~~h~~~V~~v~~~---p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
+...|+.||..|.++|++..... .+.. ..-..+|..++.- +......||. -.-+.+.||.+....+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE--~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE--TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE--EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 34689999999999999986533 2222 2345678777654 3321334444 4567888998854333211
Q ss_pred CCCCCCCceeeeccc--CceeEEEEecCC----CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004290 133 DDNAITPSALYQCHT--RRVKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~--~~v~~l~~sp~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
..... .+..+..|. .....+++-|-+ ..++..-+.||.+.+|+-+.-.. .-
T Consensus 113 ~g~~~-~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f---------------~~------- 169 (418)
T PF14727_consen 113 HGNQY-QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF---------------SR------- 169 (418)
T ss_pred cCcEE-EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE---------------EE-------
Confidence 11111 122222332 233444443322 36788889999999998554320 00
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC
Q 004290 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~ 248 (763)
..+. ..-.-.++|.+. -+.|++++++..+..|.....
T Consensus 170 ---~lp~-~llPgPl~Y~~~-tDsfvt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 170 ---FLPD-FLLPGPLCYCPR-TDSFVTASSSWTLECYKYQDL 206 (418)
T ss_pred ---EcCC-CCCCcCeEEeec-CCEEEEecCceeEEEecHHHh
Confidence 0000 111234678875 578999999999999976543
No 453
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=66.96 E-value=64 Score=32.62 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=59.1
Q ss_pred cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe------CCCcEEEEECCCCCCCCCCCCCCCCceeeec-
Q 004290 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------GDAEVRLFNLSRFSGRGLDDNAITPSALYQC- 145 (763)
Q Consensus 73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~- 145 (763)
.|++||..+.+-..-- .+-.+.|+++.|..+ .++++.|. ....+..||+.... ...+.+
T Consensus 17 ~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~--~~Llv~G~ft~~~~~~~~la~yd~~~~~-----------w~~~~~~ 82 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPG-NGISGTVTDLQWASN--NQLLVGGNFTLNGTNSSNLATYDFKNQT-----------WSSLGGG 82 (281)
T ss_pred EEEEEECCCCEeecCC-CCceEEEEEEEEecC--CEEEEEEeeEECCCCceeEEEEecCCCe-----------eeecCCc
Confidence 5899998876654433 456788999999955 46777665 35568889988633 222222
Q ss_pred ----ccCceeEEEEecCCCC-EEEEEe-CCC--cEEEEECCCCC
Q 004290 146 ----HTRRVKKLAVEVGNPH-VVWSAS-EDG--TLRQHDFRQGS 181 (763)
Q Consensus 146 ----h~~~v~~l~~sp~~~~-~l~s~s-~dg--~i~iwd~~~~~ 181 (763)
-.++|..+.+...+.. +++.|. .++ .|..||=.+..
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 3477888887554444 443433 233 46667655444
No 454
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=66.34 E-value=69 Score=34.76 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.8
Q ss_pred cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
..|..++..+.. +++++-+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 349999999974 8999999999999999975
No 455
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=64.43 E-value=1.6e+02 Score=29.57 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
..-+..+.++. ++...+..+.-++|.|+.++....+ +..+. -.+..+++.. ++++...+..|.-+
T Consensus 86 ~~l~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~~-------~~~ln-t~gyaygv~v---sGn~aYVadlddgf 150 (370)
T COG5276 86 RDLFADVRVSE----EYVYVADWSSGLRIVDISTPDSPTL-------IGFLN-TDGYAYGVYV---SGNYAYVADLDDGF 150 (370)
T ss_pred hhhhheeEecc----cEEEEEcCCCceEEEeccCCCCcce-------ecccc-CCceEEEEEe---cCCEEEEeeccCcE
Confidence 45677888874 4777788888999999998653221 22222 2244555655 45788888877778
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
.+.|+.+.+.++..... .. ....-..++.+ |++-.++..|+-+.|-|+.....-.
T Consensus 151 LivdvsdpssP~lagry--------------------a~--~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPv 205 (370)
T COG5276 151 LIVDVSDPSSPQLAGRY--------------------AL--PGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPV 205 (370)
T ss_pred EEEECCCCCCceeeeee--------------------cc--CCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCe
Confidence 89999887644111000 00 01111344454 5688888999999999998643110
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004290 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+..+-..+..+.++..+++--+++ -.+.-+.+-|..+.+
T Consensus 206 -------------------li~~~n~g~g~~sv~vsdnr~y~v--vy~egvlivd~s~~s 244 (370)
T COG5276 206 -------------------LIGSYNTGPGTYSVSVSDNRAYLV--VYDEGVLIVDVSGPS 244 (370)
T ss_pred -------------------EEEEEecCCceEEEEecCCeeEEE--EcccceEEEecCCCC
Confidence 000001111366776666644433 334456677777644
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.35 E-value=66 Score=38.97 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=95.6
Q ss_pred ccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe-eCC-----CCcEEEEEeCCCcEEE
Q 004290 49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV-PET-----SDELVVSGAGDAEVRL 121 (763)
Q Consensus 49 H~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~-p~~-----~~~~l~s~s~dg~I~i 121 (763)
|..+-..+-+-|. ++..+| -|..+.+|+++++.....+ .+-...|..|... |.. .=++++.-+.--.|.+
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI 153 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEE
Confidence 4444444555553 444444 4678999999997666666 5656666666543 211 0123333333455666
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
+-+........ ........++....-.|+++.... +|++|++| .||. +|.+.-...-.. ....+..+.+.
T Consensus 154 lgV~~~~~~~~-~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G-~dg~--lyEl~Yq~~~gW-----f~~rc~Kiclt 223 (1311)
T KOG1900|consen 154 LGVSFDEFTGE-LSIFNTSFKISVDGVSVNCITYTE-NGRIFFAG-RDGN--LYELVYQAEDGW-----FGSRCRKICLT 223 (1311)
T ss_pred EEEEeccccCc-ccccccceeeecCCceEEEEEecc-CCcEEEee-cCCC--EEEEEEeccCch-----hhcccccccCc
Confidence 66553221110 000000112222355688888544 77777554 6664 444332211000 00000001111
Q ss_pred CC----ceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004290 202 CG----AKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 202 ~~----~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.+ -...+...+ .+..+|..++.+.. -+++.+=+..++|++||+..
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDNS-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEeccc-cceeeeeccCceEEEEEccC
Confidence 00 011122233 45678999999987 47999999999999999986
No 457
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.50 E-value=2.9e+02 Score=32.58 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=31.6
Q ss_pred CCCEEEE-ecCCCcEEEEEcCcCcEEEEEec----CCcceEEEEee-CCCC-eEE
Q 004290 638 RGDYIAS-GSDDGRWFIWEKQTGRLIKMLLG----DEAVVNCVQCH-PFDC-VVA 685 (763)
Q Consensus 638 d~~~l~s-gs~Dg~i~iWd~~tg~~~~~l~g----H~~~V~~v~~s-p~~~-~la 685 (763)
.|.+++. |+.|+.++-+|.+||+.+-..+- ...+++- . -+++ |+|
T Consensus 690 agglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY---~~~~GkQYVv 741 (764)
T TIGR03074 690 AGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTY---MGKDGKQYVV 741 (764)
T ss_pred cCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEE---EecCCEEEEE
Confidence 5667765 78999999999999999876653 3444444 3 3664 444
No 458
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=63.04 E-value=83 Score=32.85 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCCEEEEecCCCcEEEEEcCcCcEE---EEE-ecCCcceEEEEeeCCCCeEEEEeCCCcEE
Q 004290 637 QRGDYIASGSDDGRWFIWEKQTGRLI---KML-LGDEAVVNCVQCHPFDCVVATSGIDNTIK 694 (763)
Q Consensus 637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~---~~l-~gH~~~V~~v~~sp~~~~laS~s~D~~Ir 694 (763)
..|+++++.-..+.|....++++..+ ..+ .....++..|++.|||.++++.+.+|.|.
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 37788888887788888888744322 233 33455899999999999999988888774
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.01 E-value=30 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=21.2
Q ss_pred EEEecCCcceEEEEeeCCCCeEEE-EeCC--CcEEEE
Q 004290 663 KMLLGDEAVVNCVQCHPFDCVVAT-SGID--NTIKIW 696 (763)
Q Consensus 663 ~~l~gH~~~V~~v~~sp~~~~laS-~s~D--~~IrvW 696 (763)
+.+.-..+.-....||||++.|+= +..+ |.-.||
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344445667789999999975554 4445 666665
No 460
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.92 E-value=14 Score=37.36 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=47.6
Q ss_pred EEec-CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEe------CCCcEEEEcCCCCC
Q 004290 643 ASGS-DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG------IDNTIKIWTPSASV 702 (763)
Q Consensus 643 ~sgs-~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s------~D~~IrvW~~~~~~ 702 (763)
.+|+ .+..|++||..+.+-.+--.+=.+.|++++|..+.+++|.|. ....+-.||.....
T Consensus 9 ~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 9 SAGSLPCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCCCcCCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 3455 678899999998887766666688999999998888888876 35567889988875
No 461
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=62.90 E-value=1.8e+02 Score=29.55 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=45.0
Q ss_pred eecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCC------cceEEEEeeCC------CCeEEEEeCC
Q 004290 632 ASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE------AVVNCVQCHPF------DCVVATSGID 690 (763)
Q Consensus 632 ~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~------~~V~~v~~sp~------~~~laS~s~D 690 (763)
+.|-...|.+|+-=--||+|-++|..+|+.+..|+.-. +..+.|+|... ..++.++|-+
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 44555677888877779999999999999999987754 36789999762 3577777653
No 462
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=61.44 E-value=16 Score=41.40 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=29.9
Q ss_pred CceEEEEeCC----CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004290 51 GCVNAISWNS----KGSLLISGSDDTHINVWSYSSRKLLHSI 88 (763)
Q Consensus 51 ~~V~~l~fsp----~g~~Lasgs~D~~v~iWd~~~~~~~~~~ 88 (763)
..+..+++++ +..+|++-+.|+++|+||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4556667766 6789999999999999999999998776
No 463
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=60.20 E-value=58 Score=36.86 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=47.6
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcCcEEEEEe-cCCcceEEEEee--CCCCeEEEEeCCCcEEEEcC
Q 004290 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCH--PFDCVVATSGIDNTIKIWTP 698 (763)
Q Consensus 636 s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~-gH~~~V~~v~~s--p~~~~laS~s~D~~IrvW~~ 698 (763)
|.-++..+.-+.-..+.|||...+.+...-. ...+.|.++.|. |+++.+.+.|..+.|.++.-
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 4445555555555689999999988643322 567889999996 77899999999999988855
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=59.98 E-value=66 Score=29.81 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.8
Q ss_pred ceeEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 004290 281 HLTHVTFSPNG------EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 281 ~i~~v~~spdg------~~l~~~s~d~~i~iwd~~~ 310 (763)
.|.+++|||-| ..|++-+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 69999999943 4678888899999997664
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=58.52 E-value=1.3e+02 Score=26.44 Aligned_cols=111 Identities=7% Similarity=0.123 Sum_probs=65.6
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCe--------EEEEEccCCCCceEEEEEee---CCCCcEEEEEeCCCcEEEEE
Q 004290 55 AISWNSKGSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVP---ETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--------~~~~~~~~h~~~V~~v~~~p---~~~~~~l~s~s~dg~I~iwd 123 (763)
.-.|.....-|+.++.-++|.|.+..... .+..+ .-...|++++--+ +...+.|+.|+. ..+..||
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 34455555567888888899999876332 23333 2345666665443 333567777774 6799999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCC
Q 004290 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
+.... -.-++.-.+.|++|.+-.- ...+++ .+.+..|.-||....
T Consensus 80 V~~N~-----------d~Fyke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VENNS-----------DLFYKEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGN 127 (136)
T ss_pred cccCc-----------hhhhhhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCc
Confidence 98632 2223344577888877321 223444 444577777775543
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.80 E-value=2.4e+02 Score=34.56 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
....+|..++....-..|.+-+..++|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 3344799999998888899999999999999987
No 467
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=57.65 E-value=32 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.4
Q ss_pred EEEEecCCCcEEEEEcCcCcEEEEEec
Q 004290 641 YIASGSDDGRWFIWEKQTGRLIKMLLG 667 (763)
Q Consensus 641 ~l~sgs~Dg~i~iWd~~tg~~~~~l~g 667 (763)
.|+.++.||.|+-.|.+||+.+=.++-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356669999999999999999876653
No 468
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=55.89 E-value=2.2e+02 Score=28.38 Aligned_cols=193 Identities=6% Similarity=-0.002 Sum_probs=113.7
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
..-..|+-.|||....++...+.|--.|..+|+....- -+.......|..-|+ +..-++-+.. .|.=.|.++....
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpd--g~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPD--GSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCC--CCeeEecCcc-eeEEecCcccceE
Confidence 34567888899998999888888888899998865544 466666778888888 4555543322 3444444432110
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004290 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
+.-...+.-........|.+ .+++-+|+.. .+.|++|+.-.
T Consensus 138 -------~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------------------- 187 (353)
T COG4257 138 -------RFPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------------------- 187 (353)
T ss_pred -------EeecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccCC----------------------
Confidence 00111222344567778888 4566556542 12344444332
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004290 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
....+.|+..|+ +..-++.-.+..|-..|..++..- .+.. | .+... .
T Consensus 188 -------------G~gpyGi~atpd-Gsvwyaslagnaiaridp~~~~ae-v~p~------------P-----~~~~~-g 234 (353)
T COG4257 188 -------------GGGPYGICATPD-GSVWYASLAGNAIARIDPFAGHAE-VVPQ------------P-----NALKA-G 234 (353)
T ss_pred -------------CCCCcceEECCC-CcEEEEeccccceEEcccccCCcc-eecC------------C-----Ccccc-c
Confidence 234567888997 667777777777877777765311 1100 0 11011 1
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004290 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
-..+--+|.|+.-++....+.++.||...
T Consensus 235 sRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 235 SRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccccccCccCcEEEeccCCceeeEeCccc
Confidence 33444567787777766778888887766
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.62 E-value=2.5e+02 Score=30.11 Aligned_cols=114 Identities=6% Similarity=0.065 Sum_probs=65.7
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290 54 NAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 54 ~~l~fsp~g~~Lasgs~D~~v~iWd~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
+.+-|....+.|+ +-..|.+.=|-+.. ......+.....++|.++.|++| .+.||.--.+++|.+++....+..
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~~- 101 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNSQ- 101 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCchh-
Confidence 4455554344333 33345666676543 22333333345679999999999 699999999999999998531111
Q ss_pred CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
.......+.-...|....|+. + .-++-.... -+-+|-+..
T Consensus 102 -----l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~-G~e~y~v~p 141 (657)
T KOG2377|consen 102 -----LEYTQECKTKNANILGFCWTS-S-TEIAFITDQ-GIEFYQVLP 141 (657)
T ss_pred -----hHHHHHhccCcceeEEEEEec-C-eeEEEEecC-CeEEEEEch
Confidence 112233333445578888875 3 334444333 355555443
No 470
>PLN02153 epithiospecifier protein
Probab=54.50 E-value=2.7e+02 Score=29.01 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=33.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEE--EEcc-C-CCCc-eEEEEEeeCCCCcEEEEEeCC-----------CcE
Q 004290 61 KGSLLISGSDD-----THINVWSYSSRKLLH--SIET-G-HSAN-VFCTKFVPETSDELVVSGAGD-----------AEV 119 (763)
Q Consensus 61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~--~~~~-~-h~~~-V~~v~~~p~~~~~~l~s~s~d-----------g~I 119 (763)
++++++.|+.+ ..+.+||+.+.+-.. .+.. . .... -.+++. -+ +.+++.|+.+ ..|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DE--NHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-EC--CEEEEECCccCCCccCCCcccceE
Confidence 46677777753 357788887765332 1100 0 0111 122222 23 4677777754 247
Q ss_pred EEEECCCC
Q 004290 120 RLFNLSRF 127 (763)
Q Consensus 120 ~iwd~~~~ 127 (763)
.+||+.+.
T Consensus 162 ~~yd~~~~ 169 (341)
T PLN02153 162 EAYNIADG 169 (341)
T ss_pred EEEECCCC
Confidence 77888764
No 471
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=54.29 E-value=2.3e+02 Score=28.12 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=70.0
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEe-CCCCeE-EEEEccC-CCCceEEEEEeeCCCCcEEEEEe---CCCcEEEEECC
Q 004290 52 CVNAISWNSKGSLLISGSDDTHINVWS-YSSRKL-LHSIETG-HSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLS 125 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd-~~~~~~-~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s---~dg~I~iwd~~ 125 (763)
.+..-.|++++.+++....+...+++. ..++.. ...+... -...|..++++|+ |..++... .++.|.+--+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD--G~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPD--GTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCC--CcEEEEEEecCCCCeEEEEEEE
Confidence 677888999988888777777777774 333322 1222111 1128999999999 67766655 35778887766
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEE
Q 004290 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQ 174 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~i 174 (763)
....... .....+..........+..++|.+++ .+++.+.. ++.+..
T Consensus 145 r~~~g~~-~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 145 RDGDGVP-RRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSAGGPVVR 192 (253)
T ss_pred eCCCCCc-ceeccceEecccccCcceeeeecCCC-EEEEEeCCCCCceeE
Confidence 4332200 00012233333445689999999844 55544443 443443
No 472
>PRK13684 Ycf48-like protein; Provisional
Probab=53.62 E-value=2.8e+02 Score=28.90 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=60.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEE-EeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004290 50 QGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~i-Wd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
.+.++++.+.|++.+++.+.. |.+.. +| ..++.-..+...-...++++.+.++ +..++.+ ..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~--g~~~~vg-~~G~~~~~s~d~-- 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPD--GNLWMLA-RGGQIRFNDPDD-- 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCC--CCEEEEe-cCCEEEEccCCC--
Confidence 356889999999877766544 54432 23 2233223332445578899999998 5666654 467665322221
Q ss_pred CCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004290 129 GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 174 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~i 174 (763)
+.. +.....- ..-...+..+.+.| ++.++ .++.+|.|..
T Consensus 245 G~s-----W~~~~~~~~~~~~~l~~v~~~~-~~~~~-~~G~~G~v~~ 284 (334)
T PRK13684 245 LES-----WSKPIIPEITNGYGYLDLAYRT-PGEIW-AGGGNGTLLV 284 (334)
T ss_pred CCc-----cccccCCccccccceeeEEEcC-CCCEE-EEcCCCeEEE
Confidence 111 1111100 01123577888988 44444 5566776653
No 473
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.86 E-value=55 Score=33.36 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=63.0
Q ss_pred HHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHH
Q 004290 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (763)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~ 446 (763)
++.++..+... -|.-|+..|+..|..-..+ +.+-.++|.||+++-.-- +-...++.||..++.++|.+.++.++
T Consensus 85 KeeGN~~fK~K-ryk~A~~~Yt~Glk~kc~D--~dlnavLY~NRAAa~~~l---~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 85 KEEGNEYFKEK-RYKDAVESYTEGLKKKCAD--PDLNAVLYTNRAAAQLYL---GNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHhHHHHHhh-hHHHHHHHHHHHHhhcCCC--ccHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 33444444333 3677888898888766553 455567899999765421 12345789999999999999999999
Q ss_pred HHHHHHHhCchHHH
Q 004290 447 MSEALEQLCKYKEA 460 (763)
Q Consensus 447 ~~~~~~~l~~~~~~ 460 (763)
-..++..|.+..++
T Consensus 159 ~Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 159 GAKCLLELERFAEA 172 (390)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999884443
No 474
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=52.86 E-value=2.6e+02 Score=28.23 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=75.3
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC-CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
+-+..+.|+ +++...+..+.-++|.|+.+......+-.-.. +--.++..+ |++...+..|.-+.+.|+..++.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs----Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS----GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec----CCEEEEeeccCcEEEEECCCCCC
Confidence 445566665 55666666777899999987654333211112 333444444 78888888788888999997653
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
.. ..............++.+ +++...+..|+-+.+-|+.....+
T Consensus 161 P~-------lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 161 PQ-------LAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred ce-------eeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCC
Confidence 22 123333334444677775 467777889999999999887643
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=52.83 E-value=4.6e+02 Score=31.11 Aligned_cols=146 Identities=14% Similarity=0.039 Sum_probs=78.1
Q ss_pred CCCCceEEEEEe---eCC--CCcEEEEEeCCCcEEEEECCCCCC----C-CCCCCCCCCceeeec---ccCceeEEEEec
Q 004290 91 GHSANVFCTKFV---PET--SDELVVSGAGDAEVRLFNLSRFSG----R-GLDDNAITPSALYQC---HTRRVKKLAVEV 157 (763)
Q Consensus 91 ~h~~~V~~v~~~---p~~--~~~~l~s~s~dg~I~iwd~~~~~~----~-~~~~~~~~~~~~~~~---h~~~v~~l~~sp 157 (763)
.-..+|..|+|. ... ..++|++ -....+.|+....... . ........++..+.. -..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888888 321 1234444 4456777777332111 0 000011233444432 234678899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec-cCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004290 158 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL-ADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (763)
Q Consensus 158 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~~l~sgs~ 236 (763)
.+...||.....|...|||+....... ...+.+..+....+ ... .....-..|.|.++ .+.|++++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~----------~~~~~~~~~~~gsi~~d~-~e~s~w~rI~W~~~-~~~lLv~~- 222 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK----------SSNLRLSRNISGSIIFDP-EELSNWKRILWVSD-SNRLLVCN- 222 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC----------CcceeeccCCCccccCCC-cccCcceeeEecCC-CCEEEEEc-
Confidence 888899999999999999992221110 00000000111111 111 11244567888876 45565554
Q ss_pred CCcEEEEeCCCCCC
Q 004290 237 DAFARLYDRRMLPP 250 (763)
Q Consensus 237 Dg~i~iwd~~~~~~ 250 (763)
-..+.++|+.+...
T Consensus 223 r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 223 RSKLMLIDFESNWQ 236 (765)
T ss_pred CCceEEEECCCCCc
Confidence 45678889887643
No 476
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=52.09 E-value=38 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004290 217 SLKSCDISSTRPHLLLVGGSDAFARLYD 244 (763)
Q Consensus 217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd 244 (763)
.|.+++..+ .+++++.+-+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 467777766 4999999999999983
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=51.81 E-value=2.5e+02 Score=29.21 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=67.5
Q ss_pred cCceeEEEEecCCCCEEEEEeCCCc------EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC-----Cc
Q 004290 147 TRRVKKLAVEVGNPHVVWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK-----QT 215 (763)
Q Consensus 147 ~~~v~~l~~sp~~~~~l~s~s~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 215 (763)
-+.+..|.+.| ++..+++.+.+|. +..+++...... . ....+.. ...+....+ ..
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~--~------~~~~~~~-----~~~L~~~~G~~~~~~~ 84 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG--I------GGVTILD-----MIPLRDPDGQPFPKNG 84 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCC--c------cceEecc-----ceeccCCCCCcCCcCC
Confidence 45678899987 4456677788888 766666552110 0 0000000 001111111 11
Q ss_pred cceEEEEEeCCCCcEEEEEeCC------CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC
Q 004290 216 LSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp 289 (763)
...-+|++.++ +.++++.-.+ ..|+.++.. ++.+..+..+.. ... ..........+..+-+|+++|
T Consensus 85 ~D~Egi~~~~~-g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~----~~~--~~~~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 85 LDPEGIAVPPD-GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA----FLP--DANGTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred CChhHeEEecC-CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccc----ccc--ccCccccccCCCCeEEEEECC
Confidence 23447788554 6677766666 788888876 655443321110 000 000001112333589999999
Q ss_pred CCCEEEEEeC
Q 004290 290 NGEEVLLSYS 299 (763)
Q Consensus 290 dg~~l~~~s~ 299 (763)
+|+.|+++..
T Consensus 157 dG~~l~~~~E 166 (326)
T PF13449_consen 157 DGRTLFAAME 166 (326)
T ss_pred CCCEEEEEEC
Confidence 9997777755
No 478
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=51.09 E-value=2.9e+02 Score=28.31 Aligned_cols=161 Identities=8% Similarity=0.045 Sum_probs=73.6
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004290 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..-.+.+..+.-+++ +.++++++.-....-||.-... +. .....-..+|..|.|.|+ +.+.+ ....
T Consensus 141 ~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G~~~--------w~--~~~r~~~~riq~~gf~~~-~~lw~-~~~G 206 (302)
T PF14870_consen 141 SETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPGQTT--------WQ--PHNRNSSRRIQSMGFSPD-GNLWM-LARG 206 (302)
T ss_dssp -S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT-SS---------E--EEE--SSS-EEEEEE-TT-S-EEE-EETT
T ss_pred cCCcceeEeEEECCC--CcEEEEECcccEEEEecCCCcc--------ce--EEccCccceehhceecCC-CCEEE-EeCC
Confidence 455577888888888 7888887765556678866311 11 111224678999999995 44443 4488
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
|.|+.=+..... .-|. ..+.........+..++|.+. ....++|+. |.+ +.....++
T Consensus 207 g~~~~s~~~~~~--------------~~w~------~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg~-G~l-~~S~DgGk 263 (302)
T PF14870_consen 207 GQIQFSDDPDDG--------------ETWS------EPIIPIKTNGYGILDLAYRPP-NEIWAVGGS-GTL-LVSTDGGK 263 (302)
T ss_dssp TEEEEEE-TTEE--------------EEE---------B-TTSS--S-EEEEEESSS-S-EEEEEST-T-E-EEESSTTS
T ss_pred cEEEEccCCCCc--------------cccc------cccCCcccCceeeEEEEecCC-CCEEEEeCC-ccE-EEeCCCCc
Confidence 888887721110 0010 001111123345789999986 456665554 433 33444443
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 004290 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iw 306 (763)
.-...... . .-...+..|.|.++.+ -++-+.+|.|.-|
T Consensus 264 tW~~~~~~-----------------~-~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 264 TWQKDRVG-----------------E-NVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp S-EE-GGG-----------------T-TSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred cceECccc-----------------c-CCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 22111000 0 0011378888876544 5556677777655
No 479
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=50.17 E-value=5.1e+02 Score=30.88 Aligned_cols=155 Identities=9% Similarity=0.111 Sum_probs=93.7
Q ss_pred ceEEEEeCCC-CCEEEEEeC----------CCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004290 52 CVNAISWNSK-GSLLISGSD----------DTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 52 ~V~~l~fsp~-g~~Lasgs~----------D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
.|.++.|..| +.+++.|.. .|.|.|+.+..+..+.... ..-.+.|.++.-.. |+++|. -...|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn---gkllA~--In~~v 850 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN---GKLLAG--INQSV 850 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC---CeEEEe--cCcEE
Confidence 3556668877 778887743 4778888777644333330 12235555554432 455554 46789
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004290 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++|++.+.. .++.-..|..++..+...- .+..++.|.--+.+.+.-.+..+.. +..
T Consensus 851 rLye~t~~~----------eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~-------------f~e 906 (1096)
T KOG1897|consen 851 RLYEWTTER----------ELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGN-------------FEE 906 (1096)
T ss_pred EEEEccccc----------eehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCc-------------eEE
Confidence 999998731 2444456777888888776 5678888887787777655544310 111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004290 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
.. ..-+..+++++.+-.+ ..++.+..+|.+.+-...
T Consensus 907 vA---------rD~~p~Wmtaveil~~--d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 907 VA---------RDYNPNWMTAVEILDD--DTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred ee---------hhhCccceeeEEEecC--ceEEeecccccEEEEEec
Confidence 00 0123456777777764 466777777877776554
No 480
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=49.26 E-value=63 Score=20.93 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=20.1
Q ss_pred ccCceeEEEEecCCCCEEEEEeCC--CcEEEE
Q 004290 146 HTRRVKKLAVEVGNPHVVWSASED--GTLRQH 175 (763)
Q Consensus 146 h~~~v~~l~~sp~~~~~l~s~s~d--g~i~iw 175 (763)
....-....|+|++..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999766666677777 766666
No 481
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.22 E-value=5.2 Score=42.37 Aligned_cols=148 Identities=13% Similarity=0.126 Sum_probs=91.2
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004290 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
-.......|-|. +.-++.++.+..+..||-.. +..... ...+....|+|..+++..++.+-..+.+
T Consensus 34 lv~pi~~~w~~e--~~nlavaca~tiv~~YD~ag-----------q~~le~-n~tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 34 LVGPIIHRWRPE--GHNLAVACANTIVIYYDKAG-----------QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred ccccceeeEecC--CCceehhhhhhHHHhhhhhc-----------ceeccc-CCchhHhhhhhccccchhhhhhhcCCCe
Confidence 334456678888 44577778888999998763 111111 2345567788888666677777788999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004290 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
.+||+.+....+ +...-.+.... +.|++. ...++.|...+.++||+..+...+.
T Consensus 100 ylwd~n~eytqq-----------------------LE~gg~~s~sl--l~wsKg-~~el~ig~~~gn~viynhgtsR~ii 153 (615)
T KOG2247|consen 100 YLWDVNSEYTQQ-----------------------LESGGTSSKSL--LAWSKG-TPELVIGNNAGNIVIYNHGTSRRII 153 (615)
T ss_pred eechhhhhhHHH-----------------------HhccCcchHHH--HhhccC-CccccccccccceEEEeccchhhhh
Confidence 999998754210 00000111122 567774 5677888888999999887654322
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCe
Q 004290 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~ 302 (763)
. .|.+...++++++.+.+. .+.++.|..
T Consensus 154 v---------------------~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 154 V---------------------MGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred h---------------------hcccccceeEEEecccce-eeecCcHHH
Confidence 1 232222588999988765 444444443
No 482
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.84 E-value=4.8e+02 Score=30.11 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=37.6
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004290 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
.-..|+|++..- ..+..+.-..+.+..|.|+. + ..|+....+|++++|++....
T Consensus 62 a~~~I~If~~sG-----------~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 62 ARPYIRIFNISG-----------QLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred cceeEEEEeccc-----------cchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecchhh
Confidence 345688888762 33444444445888999986 3 456678899999999986543
No 483
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=48.17 E-value=3.3e+02 Score=28.10 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeE---EEEEccCCCCce--EEEEEeeCCCCcEEEEEeC-----CCcEEEEECC
Q 004290 61 KGSLLISGSDDT-----HINVWSYSSRKL---LHSIETGHSANV--FCTKFVPETSDELVVSGAG-----DAEVRLFNLS 125 (763)
Q Consensus 61 ~g~~Lasgs~D~-----~v~iWd~~~~~~---~~~~~~~h~~~V--~~v~~~p~~~~~~l~s~s~-----dg~I~iwd~~ 125 (763)
++.+++.|+.++ .+..+|+.+.+. ...+ ..-..+. .+++.. + +.+.+.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~-~~lp~~~~~~~~~~~-~--~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETI-GNLPFTFENGSACYK-D--GTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEc-CCCCcCccCceEEEE-C--CEEEEEeCcCCCccCceEEEEcCC
Confidence 466777777542 466677766553 1222 1111111 222222 3 467777764 2357788887
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc----EEEEECCCCC
Q 004290 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT----LRQHDFRQGS 181 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~----i~iwd~~~~~ 181 (763)
+... ..+..+.... .....+... ++.+++.|+.++. +.+||..+.+
T Consensus 148 ~~~W--------~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 148 TQEW--------FELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCe--------eECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence 6432 2222221111 111122222 4567777776542 4566766543
No 484
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=46.99 E-value=61 Score=33.20 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=53.7
Q ss_pred eecccccceeeeecccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc---eE--EEEeeCCCCeEEEEeCCCcEEE
Q 004290 621 GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV---VN--CVQCHPFDCVVATSGIDNTIKI 695 (763)
Q Consensus 621 gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~---V~--~v~~sp~~~~laS~s~D~~Irv 695 (763)
-|.|.+. .-.+|.||+|.=.-..|++-|..||+++-.|.|.... +. ..+|-.+-+++-.+..+++|.|
T Consensus 144 ~HiNsV~-------~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 144 FHINSVD-------KDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred cEeeeee-------ecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 4766653 4578899999999999999999999999999886221 11 2334344456666778999999
Q ss_pred EcCC
Q 004290 696 WTPS 699 (763)
Q Consensus 696 W~~~ 699 (763)
+|-.
T Consensus 217 FDN~ 220 (299)
T PF14269_consen 217 FDNA 220 (299)
T ss_pred EcCC
Confidence 9984
No 485
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=46.10 E-value=3.8e+02 Score=28.26 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCeEEEEEccCC-CCceEEEEEeeCC--CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC----ceee
Q 004290 71 DTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPET--SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP----SALY 143 (763)
Q Consensus 71 D~~v~iWd~~~~~~~~~~~~~h-~~~V~~v~~~p~~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~ 143 (763)
-..+.+|...+++..+++.-+. .-.+..+.|..+. +-.+.-++-.++.++++................+ -..+
T Consensus 228 g~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w~~ 307 (476)
T KOG0918|consen 228 GSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENWIL 307 (476)
T ss_pred eeeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccccC
Confidence 3468899999998888874443 3457788887542 1234555556777777776642211100000000 1223
Q ss_pred ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004290 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
..-.+-|+.+-.|-++..+.+++-.-|-|+.||+...+.+
T Consensus 308 ~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~ 347 (476)
T KOG0918|consen 308 PEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNP 347 (476)
T ss_pred cccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCc
Confidence 3445678899998866545555566899999999988743
No 486
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=45.09 E-value=42 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=18.1
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEE
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVW 77 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iW 77 (763)
...++++++|+++++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777888887777777777654
No 487
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=43.56 E-value=33 Score=36.80 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEeCCCcEEEEcC
Q 004290 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIWTP 698 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s~D~~IrvW~~ 698 (763)
...|||.||.-|-|++||.---.....|.|-...|-.+..+.+|. +|||| ...+-+=|+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEec
Confidence 446999999999999999987777778888889999999999997 55555 344555544
No 488
>PLN02193 nitrile-specifier protein
Probab=42.40 E-value=5.1e+02 Score=28.59 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCeEEEEEccC-CCC--ceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECC
Q 004290 61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETG-HSA--NVFCTKFVPETSDELVVSGAGD-----AEVRLFNLS 125 (763)
Q Consensus 61 ~g~~Lasgs~D-------~~v~iWd~~~~~~~~~~~~~-h~~--~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~ 125 (763)
++.+++.|+.+ ..+.+||+.+.+-...-..+ ... ........-+ +.+++.|+.+ ..+.++|+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--STLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--CEEEEECCCCCCCCCccEEEEECC
Confidence 35566666643 24678888776543211001 000 1111111223 4677777765 357788887
Q ss_pred CC
Q 004290 126 RF 127 (763)
Q Consensus 126 ~~ 127 (763)
+.
T Consensus 253 t~ 254 (470)
T PLN02193 253 TN 254 (470)
T ss_pred CC
Confidence 63
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=42.35 E-value=2.4e+02 Score=24.82 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=48.6
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC----CCCEEEEEeCCCcEE
Q 004290 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLR 173 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~s~s~dg~i~ 173 (763)
.-+|... ...|+.++.-|+|.|++.......... ....+..+. -...|++|+--+- +...|+.|+ ...+.
T Consensus 3 iGkfDG~--~pcL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~ll 76 (136)
T PF14781_consen 3 IGKFDGV--HPCLACATTGGKVFIHNPHERGQRTGR--QDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLL 76 (136)
T ss_pred EEEeCCC--ceeEEEEecCCEEEEECCCcccccccc--ccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEE
Confidence 3455555 467888888999999998754322110 112234333 5667888865442 345666665 46899
Q ss_pred EEECCCCC
Q 004290 174 QHDFRQGS 181 (763)
Q Consensus 174 iwd~~~~~ 181 (763)
.||+....
T Consensus 77 aYDV~~N~ 84 (136)
T PF14781_consen 77 AYDVENNS 84 (136)
T ss_pred EEEcccCc
Confidence 99998875
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=42.03 E-value=50 Score=26.49 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.9
Q ss_pred eeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004290 282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~-d~~i~iwd~~~ 310 (763)
-+.+.++|++++|.+++. .+.|++|+...
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 678999999999998887 78999998754
No 491
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=41.79 E-value=39 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=16.6
Q ss_pred CCCEEEEecCCCcEEEEEcCc
Q 004290 638 RGDYIASGSDDGRWFIWEKQT 658 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~t 658 (763)
++..|+.++.||.++..|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 567899999999999999875
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.68 E-value=3.2e+02 Score=26.11 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=35.5
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004290 61 KGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 61 ~g~~Lasgs~--D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
+|.++.+.+. ...|++||+.+++.+....-. ...++.=-...-+ +.+..-.-.+|.-..+|.++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~g-d~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLG-DYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-Cccccccceeecc-ceEEEEEeccceeEEEChHH
Confidence 5677777654 346999999999877654212 1222221111111 12233334577888888876
No 493
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=41.60 E-value=4e+02 Score=27.12 Aligned_cols=77 Identities=9% Similarity=0.140 Sum_probs=47.8
Q ss_pred ceEEEEeCCCCCEEEE--EeC----------CCcEEEEeCCCCeEEEEEccC-----CCCceEEEEEeeCCC----CcEE
Q 004290 52 CVNAISWNSKGSLLIS--GSD----------DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETS----DELV 110 (763)
Q Consensus 52 ~V~~l~fsp~g~~Las--gs~----------D~~v~iWd~~~~~~~~~~~~~-----h~~~V~~v~~~p~~~----~~~l 110 (763)
.|..+...+++.+.+. |.- .-+|.+||+.+++.++++... ..+.+..+.+..... +...
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4667777777776553 321 137899999999988877322 245678888887421 1233
Q ss_pred EEEeCCCcEEEEECCCCC
Q 004290 111 VSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 111 ~s~s~dg~I~iwd~~~~~ 128 (763)
++=+..+.|.|+|+.+++
T Consensus 82 ItD~~~~glIV~dl~~~~ 99 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGK 99 (287)
T ss_dssp EEETTTCEEEEEETTTTE
T ss_pred EeCCCcCcEEEEEccCCc
Confidence 444445689999998754
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=41.24 E-value=1e+02 Score=24.78 Aligned_cols=33 Identities=6% Similarity=-0.022 Sum_probs=25.0
Q ss_pred cCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004290 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 147 ~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
-...+.|.++|+...++++....+.|+++..+.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 345788999996666666777789999998653
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=41.02 E-value=4.9e+02 Score=27.98 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=77.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004290 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
...+..+++|.+++.+..-..++-||- |... ..+.......+.++.|.++ +.+++.+ ..|.+.. ....+....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~d--g~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRAD--GGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCC--CCEEEEe-CCceEEE-ecCCCCccc
Confidence 445667788887777655433344553 2221 2222344567899999988 5666555 5666543 222211000
Q ss_pred CCCCCCCCceeeec--ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004290 132 LDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 132 ~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
. ........ -...+..+.|.+ ++.. +.++..|.+.... ..++. |. ...
T Consensus 315 --~---~~f~~~~~~~~~~~l~~v~~~~-d~~~-~a~G~~G~v~~s~-D~G~t---------------W~-------~~~ 364 (398)
T PLN00033 315 --D---FDFEEADIKSRGFGILDVGYRS-KKEA-WAAGGSGILLRST-DGGKS---------------WK-------RDK 364 (398)
T ss_pred --c---cceeecccCCCCcceEEEEEcC-CCcE-EEEECCCcEEEeC-CCCcc---------------ee-------Ecc
Confidence 0 00111111 123488888886 4444 4566778776653 22221 00 000
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004290 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (763)
Q Consensus 210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw 243 (763)
....-...++.+.|.++ + ...+.+.+|.|--|
T Consensus 365 ~~~~~~~~ly~v~f~~~-~-~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 GADNIAANLYSVKFFDD-K-KGFVLGNDGVLLRY 396 (398)
T ss_pred ccCCCCcceeEEEEcCC-C-ceEEEeCCcEEEEe
Confidence 00112345778888774 3 44555667776544
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=40.71 E-value=4.9e+02 Score=27.95 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=62.1
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEEccC-CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004290 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETG-HSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-----~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
..++.+.|.+++.+++.+ .+|.+ +|....++ ........ -...+.++.|.++ +. ++.++..|.+....-
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d--~~-~~a~G~~G~v~~s~D 355 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSK--KE-AWAAGGSGILLRSTD 355 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCC--Cc-EEEEECCCcEEEeCC
Confidence 457889999999877765 44554 44444443 22332111 2235889999987 44 455556787766543
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004290 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
. +.. ++....-..-....+.+.|.+ +.+.+ ..+.+|.|..|
T Consensus 356 ~---G~t-----W~~~~~~~~~~~~ly~v~f~~-~~~g~-~~G~~G~il~~ 396 (398)
T PLN00033 356 G---GKS-----WKRDKGADNIAANLYSVKFFD-DKKGF-VLGNDGVLLRY 396 (398)
T ss_pred C---Ccc-----eeEccccCCCCcceeEEEEcC-CCceE-EEeCCcEEEEe
Confidence 2 111 111211123345678899876 33444 45677887655
No 497
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=39.99 E-value=80 Score=25.51 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=34.0
Q ss_pred EEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEE--EeCCCcEEEE
Q 004290 643 ASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT--SGIDNTIKIW 696 (763)
Q Consensus 643 ~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS--~s~D~~IrvW 696 (763)
..+..+|.+.-||..|++.--.+.| -.--++|+.+|++..|+- .+.-...|.|
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 3455689999999999887544444 446789999999984433 3344556666
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=39.73 E-value=1.8e+02 Score=23.53 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004290 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 71 D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+|.+.-||..+++....+ .+ -.-.+.|+++++ +..++.+
T Consensus 36 ~GRll~ydp~t~~~~vl~-~~-L~fpNGVals~d--~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL-DG-LYFPNGVALSPD--ESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEE-EE-ESSEEEEEE-TT--SSEEEEE
T ss_pred CcCEEEEECCCCeEEEeh-hC-CCccCeEEEcCC--CCEEEEE
Confidence 578889999988754333 22 245789999999 5655554
No 499
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.55 E-value=2.2e+02 Score=31.21 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=81.4
Q ss_pred HHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHH
Q 004290 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (763)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~ 446 (763)
+..++..+..|. +..+|..+..+|...+.. |++|+||..++.+.+ +...|+.|....+.+.|.=.+..++
T Consensus 6 k~kgnaa~s~~d-~~~ai~~~t~ai~l~p~n------hvlySnrsaa~a~~~---~~~~al~da~k~~~l~p~w~kgy~r 75 (539)
T KOG0548|consen 6 KEKGNAAFSSGD-FETAIRLFTEAIMLSPTN------HVLYSNRSAAYASLG---SYEKALKDATKTRRLNPDWAKGYSR 75 (539)
T ss_pred HHHHHhhccccc-HHHHHHHHHHHHccCCCc------cchhcchHHHHHHHh---hHHHHHHHHHHHHhcCCchhhHHHH
Confidence 344454455554 678899999988765443 789999999988754 4556789999999999999999999
Q ss_pred HHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 004290 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK 485 (763)
Q Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 485 (763)
...++..|+++.++.....--...-|+...+-.+..+..
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999998887666555566676666554444433
No 500
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=38.89 E-value=2.6e+02 Score=32.53 Aligned_cols=149 Identities=17% Similarity=0.116 Sum_probs=85.7
Q ss_pred EEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004290 64 LLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
.+..|+.++.+-|+....+. ....+.......+.++.+++. -+..|.-||++-.+--.- .+. .+ .++.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~----Slgagl~dgt~a~y~rap-~gS-wd---~ep~ 619 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG----SLGAGLIDGTLAVYGRAP-SGS-WD---GEPN 619 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc----ccccCccCCccccccCCC-CCC-CC---CCCc
Confidence 46788889999998766322 222232334467778887765 345555666665543221 111 00 1123
Q ss_pred eeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004290 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (763)
Q Consensus 141 ~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (763)
..+..-..+|.++++.. + ++-++.+|.|.++...+.... ........+...|++
T Consensus 620 ~~~~~g~lPvrsla~~e-d---~~was~gG~V~vi~~tt~~~~----------------------~~leahqee~~~Vth 673 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQE-D---FVWASEGGCVHVIPSTTFIRS----------------------WDLEAHQEEAHSVTH 673 (925)
T ss_pred cccccCCccccchhhhh-c---eeeeecCCceEEEechhcccc----------------------chhHHHHhhcceEEE
Confidence 33344567888888864 2 445778899999988765321 112222345567888
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004290 221 CDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 221 i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
+..... + .+++-.....+++++..+..
T Consensus 674 m~~~~~-g-VwvafasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 674 MLYLDN-G-VWVAFASGDEERLFHTETLW 700 (925)
T ss_pred EEeeCC-c-eEEEEcCCCEEEEecccccC
Confidence 888764 3 55555555567777666543
Done!