Query 004293
Match_columns 763
No_of_seqs 447 out of 3257
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.2E-44 7.6E-49 390.9 36.2 209 42-311 100-328 (410)
2 2ynn_A Coatomer subunit beta'; 100.0 6E-43 2.1E-47 363.6 40.0 215 39-311 2-218 (304)
3 1got_B GT-beta; complex (GTP-b 100.0 6.3E-43 2.2E-47 369.6 39.9 214 40-311 45-258 (340)
4 3ow8_A WD repeat-containing pr 100.0 4.9E-43 1.7E-47 366.8 37.1 210 41-311 23-238 (321)
5 3iz6_a 40S ribosomal protein R 100.0 2.3E-43 7.7E-48 379.1 35.1 228 38-311 54-281 (380)
6 1nr0_A Actin interacting prote 100.0 1.4E-42 4.9E-47 396.8 39.0 272 27-332 38-378 (611)
7 2pbi_B Guanine nucleotide-bind 100.0 4.3E-42 1.5E-46 365.1 39.1 218 40-311 54-272 (354)
8 4ery_A WD repeat-containing pr 100.0 1.6E-41 5.6E-46 354.3 41.8 213 39-311 12-224 (312)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-42 7.5E-47 366.2 34.7 219 39-310 4-225 (345)
10 1nr0_A Actin interacting prote 100.0 4.5E-42 1.5E-46 392.7 37.7 285 29-335 130-505 (611)
11 4gqb_B Methylosome protein 50; 100.0 5.3E-42 1.8E-46 361.8 34.1 208 47-311 27-247 (344)
12 4g56_B MGC81050 protein; prote 100.0 8.7E-42 3E-46 363.0 35.0 211 45-310 37-258 (357)
13 2ymu_A WD-40 repeat protein; u 100.0 3.4E-40 1.1E-44 375.4 40.1 356 24-715 198-553 (577)
14 1erj_A Transcriptional repress 100.0 2.6E-40 9E-45 356.9 36.4 209 48-311 62-288 (393)
15 3frx_A Guanine nucleotide-bind 100.0 3.5E-40 1.2E-44 345.1 35.8 213 38-311 5-228 (319)
16 2ymu_A WD-40 repeat protein; u 100.0 5.6E-40 1.9E-44 373.6 39.2 242 24-334 239-480 (577)
17 2hes_X YDR267CP; beta-propelle 100.0 5.4E-40 1.9E-44 345.5 34.8 224 38-310 2-230 (330)
18 2xzm_R RACK1; ribosome, transl 100.0 1.3E-39 4.4E-44 344.8 36.7 213 39-310 10-244 (343)
19 4aow_A Guanine nucleotide-bind 100.0 2.4E-38 8.2E-43 334.2 38.8 224 29-311 17-247 (340)
20 3sfz_A APAF-1, apoptotic pepti 100.0 2E-38 6.9E-43 393.6 33.6 250 24-310 633-913 (1249)
21 4e54_B DNA damage-binding prot 100.0 8.4E-38 2.9E-42 342.3 33.3 220 39-312 108-329 (435)
22 3ei3_B DNA damage-binding prot 100.0 1.9E-37 6.5E-42 333.5 34.4 219 37-312 60-284 (383)
23 3zwl_B Eukaryotic translation 100.0 2.3E-36 7.8E-41 322.5 39.5 223 40-311 22-250 (369)
24 2pm9_A Protein WEB1, protein t 100.0 8.5E-38 2.9E-42 340.0 28.6 243 25-311 42-295 (416)
25 1r5m_A SIR4-interacting protei 100.0 2.9E-37 1E-41 336.3 32.6 236 47-332 42-300 (425)
26 1sq9_A Antiviral protein SKI8; 100.0 7.5E-37 2.6E-41 330.4 33.0 230 41-312 7-269 (397)
27 1vyh_C Platelet-activating fac 100.0 1.1E-36 3.9E-41 330.2 34.2 186 86-332 102-287 (410)
28 3gre_A Serine/threonine-protei 100.0 1.8E-37 6.2E-42 340.1 27.6 233 38-319 50-301 (437)
29 2ynn_A Coatomer subunit beta'; 100.0 1.3E-36 4.6E-41 315.7 32.2 168 84-311 5-173 (304)
30 3dm0_A Maltose-binding peripla 100.0 2.4E-36 8E-41 351.2 37.6 215 40-311 372-593 (694)
31 3odt_A Protein DOA1; ubiquitin 100.0 5.6E-36 1.9E-40 311.9 35.4 210 38-311 6-215 (313)
32 1pgu_A Actin interacting prote 100.0 2.1E-36 7.1E-41 346.8 34.8 227 27-313 38-286 (615)
33 2oaj_A Protein SNI1; WD40 repe 100.0 8.5E-37 2.9E-41 361.8 31.9 231 47-313 14-245 (902)
34 3k26_A Polycomb protein EED; W 100.0 4.3E-36 1.5E-40 320.1 33.9 231 45-311 13-261 (366)
35 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-36 1E-40 374.2 36.4 256 42-338 607-899 (1249)
36 3i2n_A WD repeat-containing pr 100.0 2.1E-36 7.2E-41 321.5 29.4 214 43-310 11-243 (357)
37 1k8k_C P40, ARP2/3 complex 41 100.0 5.9E-36 2E-40 320.1 32.5 224 46-311 4-234 (372)
38 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.8E-41 331.2 26.6 222 49-311 11-250 (416)
39 3ow8_A WD repeat-containing pr 100.0 6.8E-36 2.3E-40 312.6 30.4 229 22-311 52-280 (321)
40 4gqb_B Methylosome protein 50; 100.0 1.5E-35 5.2E-40 312.4 32.5 207 47-310 79-289 (344)
41 2oaj_A Protein SNI1; WD40 repe 100.0 8E-36 2.7E-40 353.5 32.7 299 23-338 74-505 (902)
42 2j04_B YDR362CP, TAU91; beta p 100.0 2E-36 6.7E-41 335.5 24.9 243 42-333 126-409 (524)
43 1gxr_A ESG1, transducin-like e 100.0 3.1E-35 1.1E-39 309.6 32.6 227 49-333 8-236 (337)
44 4a11_B DNA excision repair pro 100.0 1E-34 3.4E-39 314.5 36.8 242 26-312 21-278 (408)
45 4ggc_A P55CDC, cell division c 100.0 3.4E-34 1.1E-38 299.3 37.6 201 52-311 27-231 (318)
46 4gga_A P55CDC, cell division c 100.0 1.8E-34 6.3E-39 314.2 36.9 201 52-311 107-311 (420)
47 3dwl_C Actin-related protein 2 100.0 6.1E-36 2.1E-40 321.0 24.1 229 45-311 6-237 (377)
48 3iz6_a 40S ribosomal protein R 100.0 2.4E-35 8.3E-40 316.5 28.4 190 73-310 47-237 (380)
49 2pm7_B Protein transport prote 100.0 1.8E-34 6.2E-39 298.5 33.4 186 43-311 2-190 (297)
50 1got_B GT-beta; complex (GTP-b 100.0 1.6E-34 5.5E-39 305.1 33.6 171 83-311 46-216 (340)
51 4h5i_A Guanine nucleotide-exch 100.0 5.5E-35 1.9E-39 311.5 29.3 207 50-310 14-254 (365)
52 3vl1_A 26S proteasome regulato 100.0 3.9E-34 1.3E-38 311.6 36.3 246 24-311 74-323 (420)
53 3v7d_B Cell division control p 100.0 6.2E-34 2.1E-38 314.5 38.1 228 42-311 113-342 (464)
54 1pgu_A Actin interacting prote 100.0 8.2E-35 2.8E-39 333.5 31.2 281 28-333 142-500 (615)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.9E-34 9.9E-39 315.3 33.8 205 39-314 107-312 (445)
56 3mkq_A Coatomer beta'-subunit; 100.0 4E-34 1.4E-38 339.3 37.0 213 40-310 3-217 (814)
57 4aez_A CDC20, WD repeat-contai 100.0 4.9E-34 1.7E-38 308.8 33.7 203 46-311 87-294 (401)
58 3dw8_B Serine/threonine-protei 100.0 1E-33 3.5E-38 311.0 35.4 233 48-310 26-315 (447)
59 1yfq_A Cell cycle arrest prote 100.0 1.3E-33 4.5E-38 298.2 34.1 205 43-311 4-226 (342)
60 3bg1_A Protein SEC13 homolog; 100.0 1.1E-34 3.6E-39 303.1 24.4 151 45-226 8-161 (316)
61 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-33 5.3E-38 308.5 33.8 198 46-311 129-326 (435)
62 2pbi_B Guanine nucleotide-bind 100.0 2.3E-33 8E-38 297.8 33.1 174 83-311 55-230 (354)
63 3frx_A Guanine nucleotide-bind 100.0 1E-33 3.5E-38 296.0 29.9 227 21-310 33-267 (319)
64 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-33 4.4E-38 298.3 30.9 236 43-311 4-250 (351)
65 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-33 4.8E-38 298.5 30.6 247 23-311 33-284 (345)
66 4g56_B MGC81050 protein; prote 100.0 1E-33 3.5E-38 300.8 29.5 213 42-311 86-302 (357)
67 3vl1_A 26S proteasome regulato 100.0 6.9E-35 2.4E-39 317.6 20.6 220 51-311 57-279 (420)
68 3mmy_A MRNA export factor; mRN 100.0 2.7E-33 9.1E-38 298.6 31.8 212 37-311 26-248 (368)
69 3v7d_B Cell division control p 100.0 2.2E-32 7.4E-37 302.1 37.4 232 24-311 138-382 (464)
70 1erj_A Transcriptional repress 100.0 3E-33 1E-37 301.6 28.9 159 91-311 62-239 (393)
71 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-33 1.1E-37 331.3 31.8 250 25-334 32-283 (814)
72 4gga_A P55CDC, cell division c 100.0 1E-32 3.5E-37 300.4 32.7 246 8-311 104-354 (420)
73 2hes_X YDR267CP; beta-propelle 100.0 4.4E-33 1.5E-37 292.7 27.6 243 22-310 28-280 (330)
74 4ery_A WD repeat-containing pr 100.0 2.3E-32 8E-37 284.9 31.3 168 83-311 14-181 (312)
75 2xzm_R RACK1; ribosome, transl 100.0 2.2E-32 7.6E-37 289.1 29.6 230 22-311 43-286 (343)
76 3jrp_A Fusion protein of prote 100.0 1.2E-31 4.2E-36 287.1 29.0 132 41-181 2-136 (379)
77 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-32 1.4E-36 300.8 25.0 230 22-310 177-428 (524)
78 4aez_A CDC20, WD repeat-contai 100.0 4.2E-31 1.4E-35 285.8 31.9 224 24-311 109-337 (401)
79 3gre_A Serine/threonine-protei 100.0 6E-32 2E-36 296.1 25.3 225 32-311 15-246 (437)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-31 5.6E-36 289.2 23.7 212 51-311 35-255 (402)
81 2xyi_A Probable histone-bindin 100.0 2.9E-30 1E-34 281.8 33.2 223 51-310 46-309 (430)
82 4e54_B DNA damage-binding prot 100.0 1.2E-30 4E-35 285.5 27.0 193 23-252 137-332 (435)
83 1r5m_A SIR4-interacting protei 100.0 7.1E-31 2.4E-35 285.7 25.1 220 72-333 25-259 (425)
84 3dm0_A Maltose-binding peripla 100.0 1.8E-30 6.2E-35 301.6 29.2 232 22-312 399-634 (694)
85 4ggc_A P55CDC, cell division c 100.0 9.4E-30 3.2E-34 265.5 31.6 228 24-311 41-274 (318)
86 3ei3_B DNA damage-binding prot 100.0 2.2E-30 7.5E-35 278.3 27.3 179 76-311 57-237 (383)
87 4aow_A Guanine nucleotide-bind 100.0 1.1E-29 3.8E-34 267.6 31.6 177 81-311 27-205 (340)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-30 4.9E-35 280.4 24.5 199 48-311 13-212 (588)
89 4gq1_A NUP37; propeller, trans 100.0 1.1E-30 3.6E-35 281.5 23.1 174 107-311 101-287 (393)
90 1sq9_A Antiviral protein SKI8; 100.0 2.3E-30 7.7E-35 279.5 24.7 264 8-312 16-324 (397)
91 4a11_B DNA excision repair pro 100.0 3.7E-29 1.3E-33 270.7 33.6 249 23-311 61-324 (408)
92 1gxr_A ESG1, transducin-like e 100.0 9E-30 3.1E-34 267.8 28.0 227 46-333 47-277 (337)
93 3i2n_A WD repeat-containing pr 100.0 3.2E-30 1.1E-34 273.7 24.4 229 27-312 43-293 (357)
94 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-29 9.4E-34 266.5 30.4 217 38-311 7-228 (355)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.3E-29 3.2E-33 271.7 35.1 209 50-312 4-273 (450)
96 1yfq_A Cell cycle arrest prote 100.0 2.5E-29 8.7E-34 265.2 29.4 161 88-310 6-179 (342)
97 3odt_A Protein DOA1; ubiquitin 100.0 4.4E-29 1.5E-33 259.7 30.7 167 78-307 3-171 (313)
98 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-29 6.6E-34 269.4 28.7 170 90-311 5-174 (372)
99 2pm7_B Protein transport prote 100.0 2.4E-29 8.2E-34 260.0 27.7 242 23-310 26-285 (297)
100 3jro_A Fusion protein of prote 100.0 4.8E-30 1.6E-34 299.8 25.2 130 43-181 2-134 (753)
101 3dwl_C Actin-related protein 2 100.0 9E-30 3.1E-34 272.8 25.3 246 23-310 28-281 (377)
102 3k26_A Polycomb protein EED; W 100.0 6.5E-30 2.2E-34 272.2 23.9 258 27-311 43-319 (366)
103 3zwl_B Eukaryotic translation 100.0 1.1E-28 3.8E-33 262.9 33.3 177 84-310 24-206 (369)
104 3dw8_B Serine/threonine-protei 100.0 5.5E-29 1.9E-33 273.2 24.9 204 91-312 26-260 (447)
105 2w18_A PALB2, fancn, partner a 100.0 2.6E-28 8.8E-33 247.0 26.2 220 38-311 23-270 (356)
106 3bws_A Protein LP49; two-domai 100.0 6.3E-28 2.1E-32 263.7 30.9 211 39-311 112-335 (433)
107 2xyi_A Probable histone-bindin 100.0 3.4E-28 1.2E-32 265.4 26.1 219 44-311 122-354 (430)
108 3bg1_A Protein SEC13 homolog; 100.0 1.5E-28 5.2E-33 256.3 21.1 241 23-310 30-293 (316)
109 3lrv_A PRE-mRNA-splicing facto 100.0 2.9E-28 1E-32 257.5 23.0 198 57-311 43-245 (343)
110 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-27 6E-32 260.4 29.8 157 90-311 130-286 (435)
111 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-27 9.3E-32 259.7 29.7 218 24-314 135-352 (445)
112 1l0q_A Surface layer protein; 100.0 5.8E-27 2E-31 252.3 30.7 185 63-311 3-190 (391)
113 3mmy_A MRNA export factor; mRN 100.0 2.1E-27 7.1E-32 252.9 25.3 174 77-311 24-200 (368)
114 1l0q_A Surface layer protein; 100.0 1.4E-26 4.7E-31 249.3 31.4 223 23-311 7-234 (391)
115 2j04_A TAU60, YPL007P, hypothe 100.0 6.3E-28 2.2E-32 259.9 20.3 239 24-332 33-278 (588)
116 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-26 4E-31 246.2 27.1 83 616-702 188-273 (355)
117 3jrp_A Fusion protein of prote 100.0 1.7E-26 5.8E-31 247.0 28.3 244 23-312 28-289 (379)
118 4h5i_A Guanine nucleotide-exch 100.0 4.9E-27 1.7E-31 250.0 22.8 208 48-311 131-344 (365)
119 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-26 5E-31 250.3 26.9 256 24-336 53-328 (402)
120 4gq1_A NUP37; propeller, trans 99.9 1.2E-26 4.1E-31 249.8 25.2 248 49-311 88-349 (393)
121 3f3f_A Nucleoporin SEH1; struc 99.9 1.2E-25 4E-30 237.0 26.5 265 23-312 28-339 (351)
122 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.9E-26 2.7E-30 248.4 25.6 173 94-311 5-230 (450)
123 3lrv_A PRE-mRNA-splicing facto 99.9 3.2E-26 1.1E-30 241.8 20.5 153 107-311 48-202 (343)
124 3jro_A Fusion protein of prote 99.9 2.8E-25 9.6E-30 259.5 25.3 243 23-311 26-286 (753)
125 1nir_A Nitrite reductase; hemo 99.9 2.5E-24 8.5E-29 240.4 31.6 228 24-311 155-403 (543)
126 2w18_A PALB2, fancn, partner a 99.9 7.6E-25 2.6E-29 221.6 22.6 227 27-308 62-355 (356)
127 3bws_A Protein LP49; two-domai 99.9 8.2E-24 2.8E-28 231.0 31.1 205 49-311 59-293 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4E-24 1.4E-28 231.5 23.9 201 49-311 61-301 (415)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-23 6.7E-28 226.1 25.3 222 26-311 91-345 (415)
130 1nir_A Nitrite reductase; hemo 99.9 5.7E-23 1.9E-27 229.4 28.8 204 57-311 144-356 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-21 9.4E-26 226.4 31.3 218 50-311 36-322 (741)
132 1k32_A Tricorn protease; prote 99.9 6E-21 2.1E-25 231.4 29.0 272 28-336 33-393 (1045)
133 3u4y_A Uncharacterized protein 99.9 1.4E-19 4.9E-24 189.5 32.1 198 56-311 3-208 (331)
134 1k32_A Tricorn protease; prote 99.9 3.3E-20 1.1E-24 225.0 28.7 215 49-310 13-274 (1045)
135 1ri6_A Putative isomerase YBHE 99.9 7.7E-20 2.6E-24 192.3 27.6 195 64-310 7-209 (343)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.6E-20 5.4E-25 219.3 21.7 224 52-312 18-291 (723)
137 2ojh_A Uncharacterized protein 99.8 7E-20 2.4E-24 187.9 23.8 180 67-310 17-204 (297)
138 2z3z_A Dipeptidyl aminopeptida 99.8 7.5E-20 2.6E-24 212.9 26.4 201 51-309 82-341 (706)
139 3vgz_A Uncharacterized protein 99.8 8.3E-19 2.8E-23 185.3 31.6 206 49-311 39-263 (353)
140 1pby_B Quinohemoprotein amine 99.8 9.9E-20 3.4E-24 190.9 23.9 147 63-251 2-167 (337)
141 2ecf_A Dipeptidyl peptidase IV 99.8 6.3E-20 2.2E-24 214.8 23.1 201 52-310 110-367 (741)
142 3hfq_A Uncharacterized protein 99.8 5.1E-18 1.7E-22 179.0 30.9 196 71-310 15-218 (347)
143 1ri6_A Putative isomerase YBHE 99.8 3.1E-18 1.1E-22 180.0 28.8 237 25-310 12-262 (343)
144 3o4h_A Acylamino-acid-releasin 99.8 8E-19 2.7E-23 199.2 26.0 197 50-312 21-229 (582)
145 3u4y_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 178.7 28.7 229 23-312 15-254 (331)
146 2z3z_A Dipeptidyl aminopeptida 99.8 8.6E-19 2.9E-23 203.9 26.0 220 37-311 14-294 (706)
147 2ojh_A Uncharacterized protein 99.8 7.9E-19 2.7E-23 180.0 22.4 255 21-338 15-288 (297)
148 1xfd_A DIP, dipeptidyl aminope 99.8 1.1E-18 3.8E-23 203.6 22.8 244 26-307 35-341 (723)
149 1jmx_B Amine dehydrogenase; ox 99.8 2.9E-18 9.9E-23 180.8 23.6 158 55-252 4-180 (349)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 1.9E-18 6.7E-23 187.4 16.7 218 49-311 35-279 (434)
151 3pe7_A Oligogalacturonate lyas 99.8 2.9E-17 9.8E-22 176.1 24.4 212 40-312 20-275 (388)
152 3scy_A Hypothetical bacterial 99.8 4.6E-16 1.6E-20 165.0 32.6 242 27-310 26-291 (361)
153 3hfq_A Uncharacterized protein 99.8 7.1E-17 2.4E-21 170.2 26.0 236 27-310 15-271 (347)
154 3scy_A Hypothetical bacterial 99.8 2E-16 6.7E-21 167.8 29.2 214 61-311 12-243 (361)
155 1z68_A Fibroblast activation p 99.8 1.4E-17 4.8E-22 194.1 22.0 211 55-312 20-293 (719)
156 3o4h_A Acylamino-acid-releasin 99.7 2E-17 6.7E-22 187.7 17.9 63 635-698 202-274 (582)
157 2oit_A Nucleoporin 214KDA; NH2 99.7 1.6E-16 5.4E-21 172.4 21.4 219 49-309 91-332 (434)
158 1pby_B Quinohemoprotein amine 99.7 2.2E-16 7.4E-21 165.3 20.5 246 25-314 8-314 (337)
159 3vgz_A Uncharacterized protein 99.7 1.2E-15 4E-20 161.0 25.9 249 27-337 68-329 (353)
160 3azo_A Aminopeptidase; POP fam 99.7 4.8E-15 1.6E-19 170.9 25.1 208 44-310 17-274 (662)
161 3c5m_A Oligogalacturonate lyas 99.7 6.2E-16 2.1E-20 166.0 16.5 211 41-311 21-274 (396)
162 1jof_A Carboxy-CIS,CIS-muconat 99.7 5E-15 1.7E-19 157.2 22.8 195 64-310 4-224 (365)
163 1jmx_B Amine dehydrogenase; ox 99.7 2.9E-15 9.8E-20 157.7 19.8 248 23-312 16-327 (349)
164 2oiz_A Aromatic amine dehydrog 99.7 4.9E-14 1.7E-18 149.0 29.1 185 26-248 29-231 (361)
165 4a5s_A Dipeptidyl peptidase 4 99.6 1.1E-14 3.8E-19 169.8 24.2 112 52-181 18-143 (740)
166 2oiz_A Aromatic amine dehydrog 99.6 7.4E-14 2.5E-18 147.6 27.3 193 61-311 14-231 (361)
167 3fvz_A Peptidyl-glycine alpha- 99.6 9.9E-14 3.4E-18 144.8 27.7 116 50-176 23-172 (329)
168 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.8E-14 1.6E-18 149.6 24.6 216 49-309 38-290 (365)
169 1z68_A Fibroblast activation p 99.6 1.9E-15 6.6E-20 175.9 14.1 158 98-308 20-198 (719)
170 1q7f_A NHL, brain tumor CG1071 99.6 9.5E-13 3.3E-17 134.3 29.3 161 91-310 27-194 (286)
171 2dg1_A DRP35, lactonase; beta 99.5 1.1E-12 3.7E-17 137.1 26.2 197 51-310 6-213 (333)
172 4a5s_A Dipeptidyl peptidase 4 99.5 3.9E-13 1.3E-17 156.7 24.1 262 27-311 35-354 (740)
173 2gop_A Trilobed protease; beta 99.5 6.3E-13 2.2E-17 139.8 22.2 72 635-714 271-343 (347)
174 3azo_A Aminopeptidase; POP fam 99.5 4.5E-13 1.6E-17 154.3 19.7 232 28-309 47-322 (662)
175 1qks_A Cytochrome CD1 nitrite 99.5 3.7E-11 1.3E-15 133.5 31.6 226 27-311 176-422 (567)
176 2z2n_A Virginiamycin B lyase; 99.5 2E-10 6.9E-15 117.4 34.6 200 46-308 10-211 (299)
177 2xdw_A Prolyl endopeptidase; a 99.5 1.8E-11 6.1E-16 141.9 29.4 194 60-311 81-321 (710)
178 3pe7_A Oligogalacturonate lyas 99.5 7.6E-12 2.6E-16 133.7 24.3 247 37-340 67-369 (388)
179 3e5z_A Putative gluconolactona 99.4 2.9E-11 1E-15 123.9 25.7 165 84-309 19-201 (296)
180 2xdw_A Prolyl endopeptidase; a 99.4 1.1E-11 3.8E-16 143.7 24.2 209 48-310 122-368 (710)
181 1q7f_A NHL, brain tumor CG1071 99.4 3.1E-11 1.1E-15 123.0 24.7 221 27-311 50-281 (286)
182 2bkl_A Prolyl endopeptidase; m 99.4 2.8E-12 9.5E-17 148.3 17.8 204 48-309 118-348 (695)
183 3fvz_A Peptidyl-glycine alpha- 99.4 1.8E-11 6.3E-16 127.5 22.3 225 29-310 70-322 (329)
184 2bkl_A Prolyl endopeptidase; m 99.4 1.3E-11 4.4E-16 142.7 22.5 194 59-311 76-305 (695)
185 2dg1_A DRP35, lactonase; beta 99.4 9.7E-11 3.3E-15 122.2 25.9 240 40-335 34-293 (333)
186 3dsm_A Uncharacterized protein 99.4 4.4E-11 1.5E-15 124.5 21.7 183 70-311 15-213 (328)
187 1qks_A Cytochrome CD1 nitrite 99.4 3.3E-10 1.1E-14 125.8 29.9 204 60-311 165-374 (567)
188 3c5m_A Oligogalacturonate lyas 99.3 1.6E-11 5.5E-16 131.3 16.5 223 53-339 83-368 (396)
189 1rwi_B Serine/threonine-protei 99.3 3.2E-10 1.1E-14 114.2 24.6 155 95-310 25-180 (270)
190 3e5z_A Putative gluconolactona 99.3 2.1E-10 7.3E-15 117.4 22.9 234 40-336 17-271 (296)
191 2mad_H Methylamine dehydrogena 99.3 4E-09 1.4E-13 111.3 32.6 194 57-311 27-244 (373)
192 3no2_A Uncharacterized protein 99.3 1.4E-09 4.8E-14 109.7 27.7 99 61-176 4-105 (276)
193 2qc5_A Streptogramin B lactona 99.3 6.8E-09 2.3E-13 106.0 32.1 200 48-308 17-216 (300)
194 1yr2_A Prolyl oligopeptidase; 99.2 2.9E-10 9.9E-15 132.4 22.4 193 59-310 115-350 (741)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 4.7E-09 1.6E-13 108.1 28.3 66 635-700 233-299 (314)
196 2gop_A Trilobed protease; beta 99.2 4.5E-10 1.6E-14 117.7 19.6 205 51-331 59-311 (347)
197 1rwi_B Serine/threonine-protei 99.2 1.9E-09 6.4E-14 108.5 22.4 219 52-333 25-245 (270)
198 3no2_A Uncharacterized protein 99.2 1.7E-09 6E-14 109.0 21.1 225 24-310 11-251 (276)
199 1xip_A Nucleoporin NUP159; bet 99.2 1.4E-10 4.7E-15 121.4 13.1 178 52-296 39-230 (388)
200 3dsm_A Uncharacterized protein 99.2 5.1E-09 1.8E-13 108.8 24.9 238 28-331 64-321 (328)
201 2qe8_A Uncharacterized protein 99.2 3.6E-09 1.2E-13 110.7 23.3 193 39-307 8-223 (343)
202 3sjl_D Methylamine dehydrogena 99.1 3.3E-08 1.1E-12 102.9 28.6 194 56-311 38-257 (386)
203 1yr2_A Prolyl oligopeptidase; 99.1 1.1E-09 3.8E-14 127.4 18.1 204 48-309 160-392 (741)
204 2z2n_A Virginiamycin B lyase; 99.1 9.5E-08 3.3E-12 97.3 30.1 159 90-308 11-169 (299)
205 2mad_H Methylamine dehydrogena 99.1 2.5E-08 8.5E-13 105.2 26.2 243 29-316 48-356 (373)
206 3g4e_A Regucalcin; six bladed 99.1 1.5E-07 5E-12 96.2 29.9 160 91-309 10-179 (297)
207 3c75_H MADH, methylamine dehyd 99.1 3.4E-08 1.2E-12 104.8 25.5 191 60-311 82-296 (426)
208 3hrp_A Uncharacterized protein 99.0 5.9E-08 2E-12 103.8 27.4 164 94-310 131-298 (409)
209 3sjl_D Methylamine dehydrogena 99.0 1E-07 3.6E-12 99.1 25.3 259 29-332 60-384 (386)
210 3hrp_A Uncharacterized protein 99.0 1.1E-07 3.9E-12 101.6 26.0 219 51-312 131-356 (409)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 5.4E-08 1.9E-12 100.1 21.1 205 49-311 69-300 (314)
212 3iuj_A Prolyl endopeptidase; h 98.9 1.3E-08 4.5E-13 117.2 17.1 207 48-311 126-360 (693)
213 3g4e_A Regucalcin; six bladed 98.9 1.9E-07 6.4E-12 95.4 23.8 235 45-336 7-256 (297)
214 3c75_H MADH, methylamine dehyd 98.9 1.3E-07 4.3E-12 100.4 22.7 254 28-324 99-416 (426)
215 2qc5_A Streptogramin B lactona 98.9 7.6E-07 2.6E-11 90.5 27.5 201 48-309 59-259 (300)
216 3dr2_A Exported gluconolactona 98.8 9.2E-07 3.1E-11 90.6 25.2 159 91-310 42-224 (305)
217 2ghs_A AGR_C_1268P; regucalcin 98.8 1E-06 3.4E-11 91.2 25.6 224 50-335 48-285 (326)
218 1mda_H Methylamine dehydrogena 98.8 8.7E-08 3E-12 99.9 16.9 256 29-331 47-366 (368)
219 1xip_A Nucleoporin NUP159; bet 98.8 6.2E-08 2.1E-12 101.3 15.6 146 48-234 86-231 (388)
220 1mda_H Methylamine dehydrogena 98.8 1.3E-07 4.5E-12 98.6 17.6 79 635-714 271-360 (368)
221 2hz6_A Endoplasmic reticulum t 98.8 2.3E-09 8E-14 113.2 4.3 185 61-315 8-197 (369)
222 3iuj_A Prolyl endopeptidase; h 98.8 4.6E-07 1.6E-11 104.2 23.5 68 635-703 333-408 (693)
223 1yiq_A Quinohemoprotein alcoho 98.8 1.1E-06 3.9E-11 100.4 26.4 53 635-687 482-536 (689)
224 3dr2_A Exported gluconolactona 98.7 6E-07 2.1E-11 92.0 19.7 230 41-335 35-290 (305)
225 2ghs_A AGR_C_1268P; regucalcin 98.7 2.8E-06 9.4E-11 87.9 23.8 193 50-300 89-292 (326)
226 1kb0_A Quinohemoprotein alcoho 98.6 4.5E-06 1.5E-10 95.2 24.2 65 635-699 484-566 (677)
227 1kb0_A Quinohemoprotein alcoho 98.6 4E-06 1.4E-10 95.7 22.9 60 648-708 456-515 (677)
228 2iwa_A Glutamine cyclotransfer 98.6 7.4E-06 2.5E-10 80.6 21.7 226 39-311 8-238 (266)
229 1yiq_A Quinohemoprotein alcoho 98.5 6.9E-06 2.4E-10 93.9 23.7 61 648-709 454-514 (689)
230 2hz6_A Endoplasmic reticulum t 98.5 1.7E-07 5.9E-12 98.8 8.7 143 107-312 9-151 (369)
231 2qe8_A Uncharacterized protein 98.5 3.8E-06 1.3E-10 87.5 18.9 221 48-332 64-301 (343)
232 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.00014 4.8E-09 76.5 29.5 106 61-182 52-165 (376)
233 1npe_A Nidogen, entactin; glyc 98.4 5.9E-05 2E-09 75.2 24.4 219 51-332 36-261 (267)
234 1npe_A Nidogen, entactin; glyc 98.4 0.00018 6.2E-09 71.6 28.0 190 63-310 2-198 (267)
235 3nol_A Glutamine cyclotransfer 98.4 1.7E-05 5.9E-10 76.9 18.2 211 39-299 30-244 (262)
236 2ece_A 462AA long hypothetical 98.3 4E-05 1.4E-09 80.3 20.5 216 57-311 88-353 (462)
237 3mbr_X Glutamine cyclotransfer 98.2 0.00013 4.4E-09 70.2 20.8 211 40-299 9-223 (243)
238 3hxj_A Pyrrolo-quinoline quino 98.2 1.3E-05 4.6E-10 82.6 14.8 182 55-312 24-205 (330)
239 2ece_A 462AA long hypothetical 98.2 5.4E-05 1.9E-09 79.3 18.6 248 17-298 95-399 (462)
240 3nok_A Glutaminyl cyclase; bet 98.2 4.1E-05 1.4E-09 74.3 16.1 210 40-299 43-254 (268)
241 3qqz_A Putative uncharacterize 98.1 0.0017 5.7E-08 63.4 26.3 226 44-309 20-252 (255)
242 2p4o_A Hypothetical protein; p 98.0 0.0012 4E-08 67.2 24.9 243 40-336 22-272 (306)
243 1kv9_A Type II quinohemoprotei 98.0 0.0007 2.4E-08 77.0 23.9 64 644-708 433-496 (668)
244 4a2l_A BT_4663, two-component 98.0 0.012 4E-07 68.7 35.0 205 53-311 175-387 (795)
245 3v64_C Agrin; beta propeller, 98.0 0.0059 2E-07 63.2 28.8 223 51-332 73-298 (349)
246 1kv9_A Type II quinohemoprotei 97.9 0.0012 4.1E-08 75.1 25.0 54 635-688 465-520 (668)
247 3v65_B Low-density lipoprotein 97.9 0.0038 1.3E-07 65.7 26.6 223 51-332 116-341 (386)
248 1fwx_A Nitrous oxide reductase 97.9 0.00012 4.1E-09 79.5 14.7 169 51-247 134-361 (595)
249 4a2l_A BT_4663, two-component 97.9 0.022 7.6E-07 66.3 35.0 208 50-311 214-437 (795)
250 1ijq_A LDL receptor, low-densi 97.9 0.01 3.5E-07 60.4 27.9 226 50-332 29-261 (316)
251 3v64_C Agrin; beta propeller, 97.8 0.0097 3.3E-07 61.6 27.8 201 50-311 33-235 (349)
252 2p4o_A Hypothetical protein; p 97.7 0.054 1.8E-06 54.7 30.7 174 81-310 21-198 (306)
253 2ad6_A Methanol dehydrogenase 97.7 0.008 2.7E-07 66.7 25.9 54 637-690 473-528 (571)
254 2iwa_A Glutamine cyclotransfer 97.7 0.0009 3.1E-08 65.7 15.6 196 82-336 9-220 (266)
255 3v65_B Low-density lipoprotein 97.7 0.0082 2.8E-07 63.1 24.2 198 53-311 79-278 (386)
256 3p5b_L Low density lipoprotein 97.6 0.032 1.1E-06 58.8 28.1 227 49-332 110-343 (400)
257 2fp8_A Strictosidine synthase; 97.6 0.0049 1.7E-07 63.0 21.1 202 51-311 80-314 (322)
258 1fwx_A Nitrous oxide reductase 97.6 0.00015 5E-09 78.8 9.7 222 60-310 99-361 (595)
259 3nol_A Glutamine cyclotransfer 97.6 0.0018 6.1E-08 62.8 15.9 192 83-334 32-237 (262)
260 2ad6_A Methanol dehydrogenase 97.6 0.035 1.2E-06 61.6 28.5 61 647-708 442-502 (571)
261 3nok_A Glutaminyl cyclase; bet 97.6 0.0073 2.5E-07 58.5 19.8 190 83-334 44-247 (268)
262 3hxj_A Pyrrolo-quinoline quino 97.5 0.0014 4.8E-08 67.1 15.7 179 62-312 107-285 (330)
263 3sov_A LRP-6, low-density lipo 97.5 0.027 9.1E-07 57.3 24.9 223 51-332 35-261 (318)
264 2fp8_A Strictosidine synthase; 97.5 0.0047 1.6E-07 63.2 19.2 202 46-309 14-268 (322)
265 1flg_A Protein (quinoprotein e 97.5 0.042 1.5E-06 61.0 27.7 63 646-709 463-525 (582)
266 1w6s_A Methanol dehydrogenase 97.5 0.019 6.4E-07 63.8 24.4 61 647-708 451-511 (599)
267 1flg_A Protein (quinoprotein e 97.4 0.025 8.4E-07 62.9 25.3 51 638-688 496-548 (582)
268 1ijq_A LDL receptor, low-densi 97.4 0.033 1.1E-06 56.6 24.3 191 64-310 3-195 (316)
269 2xe4_A Oligopeptidase B; hydro 97.4 0.0048 1.7E-07 71.2 19.9 120 48-180 170-305 (751)
270 3m0c_C LDL receptor, low-densi 97.4 0.061 2.1E-06 61.7 28.2 225 50-333 423-656 (791)
271 1w6s_A Methanol dehydrogenase 97.3 0.055 1.9E-06 60.1 26.5 52 637-688 482-535 (599)
272 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.029 1E-06 58.5 23.4 207 61-314 102-341 (376)
273 3p5b_L Low density lipoprotein 97.3 0.068 2.3E-06 56.3 25.5 193 64-312 85-279 (400)
274 3mbr_X Glutamine cyclotransfer 97.3 0.014 4.8E-07 56.0 17.9 174 83-316 10-185 (243)
275 3v9f_A Two-component system se 97.3 0.25 8.7E-06 57.1 32.5 200 50-311 257-479 (781)
276 1k3i_A Galactose oxidase precu 97.2 0.0077 2.6E-07 68.4 18.6 115 55-181 190-325 (656)
277 3sov_A LRP-6, low-density lipo 97.2 0.038 1.3E-06 56.1 21.7 183 71-311 12-198 (318)
278 3m0c_C LDL receptor, low-densi 97.2 0.066 2.2E-06 61.4 25.5 188 70-312 402-591 (791)
279 3v9f_A Two-component system se 97.1 0.72 2.5E-05 53.3 34.9 216 51-310 211-436 (781)
280 3amr_A 3-phytase; beta-propell 97.0 0.13 4.5E-06 52.0 22.9 202 62-310 40-263 (355)
281 1k3i_A Galactose oxidase precu 97.0 0.015 5E-07 66.1 17.7 96 29-127 220-324 (656)
282 1n7d_A LDL receptor, low-densi 97.0 0.0017 5.7E-08 74.1 9.7 204 51-312 406-616 (699)
283 4hw6_A Hypothetical protein, I 96.8 0.1 3.6E-06 55.4 21.8 156 52-246 140-303 (433)
284 4a0p_A LRP6, LRP-6, low-densit 96.8 0.45 1.5E-05 53.1 27.0 220 51-332 37-260 (628)
285 4a0p_A LRP6, LRP-6, low-densit 96.6 0.45 1.5E-05 53.1 25.6 191 64-313 8-200 (628)
286 2p9w_A MAL S 1 allergenic prot 96.5 0.18 6.3E-06 50.5 19.0 170 45-246 7-214 (334)
287 3tc9_A Hypothetical hydrolase; 96.4 0.072 2.5E-06 56.7 17.0 157 52-247 138-301 (430)
288 2p9w_A MAL S 1 allergenic prot 96.4 0.078 2.7E-06 53.1 15.8 179 92-310 11-215 (334)
289 2xzh_A Clathrin heavy chain 1; 96.4 0.9 3.1E-05 45.1 25.8 221 56-328 72-308 (365)
290 2xe4_A Oligopeptidase B; hydro 96.3 0.26 9E-06 56.6 21.9 116 53-179 223-354 (751)
291 2xbg_A YCF48-like protein; pho 96.3 1.2 4E-05 45.2 27.3 61 635-698 257-320 (327)
292 2xbg_A YCF48-like protein; pho 96.2 0.66 2.3E-05 47.1 22.2 200 49-308 120-320 (327)
293 1bpo_A Protein (clathrin); cla 96.2 1.5 5E-05 45.5 26.5 224 55-330 70-309 (494)
294 4hw6_A Hypothetical protein, I 96.0 0.43 1.5E-05 50.6 20.3 234 49-309 180-432 (433)
295 1n7d_A LDL receptor, low-densi 96.0 0.027 9.2E-07 64.1 11.2 164 53-254 455-621 (699)
296 3s94_A LRP-6, low-density lipo 95.8 1.4 4.6E-05 49.2 24.2 201 51-312 349-553 (619)
297 3s94_A LRP-6, low-density lipo 95.8 3.1 0.00011 46.2 37.1 205 50-314 39-247 (619)
298 3qqz_A Putative uncharacterize 95.8 1.5 5.2E-05 42.3 21.7 168 51-246 70-252 (255)
299 3tc9_A Hypothetical hydrolase; 95.7 0.12 4.2E-06 54.9 14.4 158 95-310 138-301 (430)
300 3ei3_A DNA damage-binding prot 95.5 6.1 0.00021 47.4 33.9 77 50-126 553-636 (1158)
301 3pbp_A Nucleoporin NUP82; beta 95.5 0.17 5.7E-06 52.3 13.5 123 52-176 67-209 (452)
302 3ii7_A Kelch-like protein 7; p 95.3 1.4 4.8E-05 43.9 20.1 95 28-127 24-128 (306)
303 3sre_A PON1, serum paraoxonase 95.2 0.85 2.9E-05 46.6 18.1 194 52-300 51-287 (355)
304 3kya_A Putative phosphatase; s 95.2 0.67 2.3E-05 49.6 17.8 173 53-246 141-340 (496)
305 2xn4_A Kelch-like protein 2; s 95.2 1.1 3.7E-05 44.7 18.9 107 61-181 61-184 (302)
306 3kya_A Putative phosphatase; s 94.8 0.66 2.2E-05 49.6 16.4 176 95-310 140-341 (496)
307 2vpj_A Kelch-like protein 12; 94.8 1.3 4.3E-05 44.1 18.1 136 28-181 31-186 (301)
308 3pbp_A Nucleoporin NUP82; beta 94.6 1.7 5.9E-05 44.9 18.0 168 107-306 32-208 (452)
309 1tl2_A L10, protein (tachylect 94.1 1.8 6E-05 40.5 15.3 148 61-242 3-158 (236)
310 2ism_A Putative oxidoreductase 94.0 6.2 0.00021 40.2 24.5 107 51-167 31-153 (352)
311 4asc_A Kelch repeat and BTB do 93.9 3.8 0.00013 40.9 19.6 111 57-181 41-176 (315)
312 1xi4_A Clathrin heavy chain; a 93.5 2.9 9.8E-05 50.2 19.1 212 57-315 72-294 (1630)
313 3sre_A PON1, serum paraoxonase 93.4 2.2 7.4E-05 43.5 16.4 29 282-310 223-252 (355)
314 1zgk_A Kelch-like ECH-associat 93.4 2.8 9.5E-05 41.8 17.3 106 61-181 70-195 (308)
315 2xn4_A Kelch-like protein 2; s 92.4 3.5 0.00012 40.8 16.3 107 61-181 108-231 (302)
316 2vpj_A Kelch-like protein 12; 92.2 3.2 0.00011 41.1 15.7 105 61-181 112-233 (301)
317 3ii7_A Kelch-like protein 7; p 92.2 3.2 0.00011 41.3 15.7 107 61-181 101-227 (306)
318 3a9g_A Putative uncharacterize 91.3 14 0.00047 37.6 21.9 111 50-167 28-153 (354)
319 2woz_A Kelch repeat and BTB do 90.6 14 0.0005 36.5 19.2 110 58-181 53-186 (318)
320 4asc_A Kelch repeat and BTB do 89.9 5.6 0.00019 39.6 15.0 107 61-181 98-223 (315)
321 3das_A Putative oxidoreductase 89.9 9.8 0.00033 38.5 16.5 78 92-179 30-116 (347)
322 3amr_A 3-phytase; beta-propell 89.7 7.6 0.00026 39.2 15.1 155 107-309 40-209 (355)
323 1zgk_A Kelch-like ECH-associat 89.6 6.2 0.00021 39.1 14.9 106 61-181 121-242 (308)
324 1cru_A Protein (soluble quinop 88.4 20 0.00069 37.9 18.5 68 638-705 368-447 (454)
325 2woz_A Kelch repeat and BTB do 87.5 14 0.00047 36.7 16.0 107 61-181 109-233 (318)
326 2be1_A Serine/threonine-protei 87.2 4.7 0.00016 40.7 11.9 109 63-181 11-132 (339)
327 2xzh_A Clathrin heavy chain 1; 86.8 27 0.00091 34.8 21.5 171 50-251 106-294 (365)
328 3ei3_A DNA damage-binding prot 85.6 40 0.0014 40.4 20.6 152 56-247 837-999 (1158)
329 1tl2_A L10, protein (tachylect 84.8 15 0.00051 34.3 12.7 117 148-304 41-157 (236)
330 2uvk_A YJHT; unknown function, 84.5 13 0.00043 37.7 14.1 53 61-116 65-128 (357)
331 2g8s_A Glucose/sorbosone dehyd 84.3 17 0.0006 36.8 14.9 55 637-691 287-345 (353)
332 2zwa_A Leucine carboxyl methyl 83.9 19 0.00066 40.5 16.3 158 60-249 396-579 (695)
333 3das_A Putative oxidoreductase 82.5 17 0.00057 36.8 13.5 126 44-170 25-161 (347)
334 1bpo_A Protein (clathrin); cla 80.9 57 0.0019 33.9 23.5 209 51-311 106-332 (494)
335 4gco_A Protein STI-1; structur 80.8 23 0.00077 29.3 12.2 105 363-477 13-117 (126)
336 2uvk_A YJHT; unknown function, 78.6 30 0.001 34.8 14.4 49 72-124 168-224 (357)
337 1cru_A Protein (soluble quinop 78.2 71 0.0024 33.5 21.1 114 50-168 26-163 (454)
338 2g8s_A Glucose/sorbosone dehyd 76.4 67 0.0023 32.3 24.8 72 51-125 18-106 (353)
339 1xi4_A Clathrin heavy chain; a 76.3 91 0.0031 37.8 18.4 170 51-252 106-294 (1630)
340 2ism_A Putative oxidoreductase 75.4 71 0.0024 32.1 20.7 63 50-114 74-153 (352)
341 2wg3_C Hedgehog-interacting pr 72.4 24 0.00081 37.4 11.6 119 51-170 14-160 (463)
342 3rkv_A Putative peptidylprolyl 72.1 31 0.001 29.7 10.9 110 362-475 10-131 (162)
343 4gq2_M Nucleoporin NUP120; bet 70.5 12 0.0004 44.0 9.5 37 52-88 237-273 (950)
344 2hr2_A Hypothetical protein; a 66.7 10 0.00035 33.3 6.1 120 363-486 11-147 (159)
345 3a9g_A Putative uncharacterize 66.3 1.1E+02 0.0039 30.6 23.1 63 50-114 72-153 (354)
346 3s25_A Hypothetical 7-bladed b 62.9 1.2E+02 0.004 29.7 16.7 104 56-180 58-177 (302)
347 3upv_A Heat shock protein STI1 54.6 82 0.0028 25.3 10.9 97 365-471 6-102 (126)
348 3b7f_A Glycosyl hydrolase, BNR 53.9 1.9E+02 0.0065 29.3 15.8 22 217-238 233-254 (394)
349 2zwa_A Leucine carboxyl methyl 51.9 57 0.0019 36.6 10.5 114 61-181 451-579 (695)
350 4gq2_M Nucleoporin NUP120; bet 51.7 54 0.0019 38.3 10.6 32 281-312 237-268 (950)
351 3zwu_A Alkaline phosphatase PH 50.1 41 0.0014 36.7 8.5 53 635-687 483-548 (592)
352 3f7f_A Nucleoporin NUP120; nuc 48.9 31 0.0011 38.3 7.3 36 51-88 222-257 (729)
353 3f7f_A Nucleoporin NUP120; nuc 48.2 14 0.00049 40.9 4.6 32 636-667 228-259 (729)
354 3gyz_A Chaperone protein IPGC; 47.7 1.3E+02 0.0045 25.6 11.7 109 357-475 30-138 (151)
355 4fhn_B Nucleoporin NUP120; pro 45.3 18 0.00061 43.5 5.3 31 635-665 245-275 (1139)
356 1kt0_A FKBP51, 51 kDa FK506-bi 43.9 1.4E+02 0.0047 31.2 11.6 110 365-478 270-388 (457)
357 2be1_A Serine/threonine-protei 43.8 95 0.0032 31.0 9.5 69 635-704 209-301 (339)
358 1sqj_A OXG-RCBH, oligoxylogluc 43.2 4.1E+02 0.014 30.0 16.7 115 50-172 14-145 (789)
359 3sz7_A HSC70 cochaperone (SGT) 39.1 1.8E+02 0.006 24.6 13.6 119 363-491 11-131 (164)
360 3s25_A Hypothetical 7-bladed b 37.5 3E+02 0.01 26.8 15.9 27 286-312 190-218 (302)
361 4a9v_A PHOX; hydrolase, beta-p 36.6 91 0.0031 33.6 8.3 53 635-687 483-548 (592)
362 4fhn_B Nucleoporin NUP120; pro 36.4 26 0.00089 42.1 4.7 37 52-88 239-275 (1139)
363 1ihg_A Cyclophilin 40; ppiase 35.3 1.8E+02 0.0062 29.3 10.4 116 365-484 225-350 (370)
364 2wg3_C Hedgehog-interacting pr 30.9 4.8E+02 0.016 27.2 17.6 30 94-125 14-44 (463)
365 3sbq_A Nitrous-oxide reductase 30.7 1.1E+02 0.0037 33.0 7.5 71 52-126 324-408 (638)
366 2fbn_A 70 kDa peptidylprolyl i 29.2 2.9E+02 0.0099 24.1 13.8 119 365-487 40-168 (198)
367 2vgx_A Chaperone SYCD; alterna 28.5 2.6E+02 0.0088 23.3 12.5 108 360-477 18-125 (148)
368 3ott_A Two-component system se 26.7 6.9E+02 0.024 27.7 26.3 203 51-311 373-587 (758)
369 3sbq_A Nitrous-oxide reductase 26.1 1.6E+02 0.0054 31.7 7.8 80 616-700 315-408 (638)
370 4hvt_A Ritya.17583.B, post-pro 24.5 59 0.002 36.5 4.7 72 629-701 131-226 (711)
371 3ott_A Two-component system se 24.2 7.6E+02 0.026 27.3 23.3 190 52-306 104-303 (758)
372 2c2l_A CHIP, carboxy terminus 24.1 3.2E+02 0.011 25.9 9.6 99 365-473 6-104 (281)
373 4a9v_A PHOX; hydrolase, beta-p 23.3 2.5E+02 0.0085 30.3 8.9 60 51-113 476-548 (592)
374 1hxi_A PEX5, peroxisome target 23.2 2.8E+02 0.0097 22.0 9.3 98 367-474 21-118 (121)
375 3zwu_A Alkaline phosphatase PH 23.1 2.1E+02 0.0073 31.0 8.6 59 53-113 478-548 (592)
376 3qhy_B Beta-lactamase inhibito 21.5 5.3E+02 0.018 24.5 19.7 184 52-311 64-247 (282)
377 1p5q_A FKBP52, FK506-binding p 20.0 6.1E+02 0.021 24.6 13.5 109 365-477 149-266 (336)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-44 Score=390.87 Aligned_cols=209 Identities=18% Similarity=0.299 Sum_probs=181.6
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004293 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
....|.+|.++|++++|+|++.+||+|+.|++|+|||+.+++....+ .+|...|.+++|+|+ +.+|++|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIKL 176 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCCE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999999999999888 799999999999999 799999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004293 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
||+... .++..+.+|...|.+++|+| ++.+|++++.|++|++||++++...
T Consensus 177 wd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~------------------ 227 (410)
T 1vyh_C 177 WDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV------------------ 227 (410)
T ss_dssp EETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE------------------
T ss_pred EeCCCC----------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE------------------
Confidence 999862 44778889999999999999 6689999999999999999887521
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004293 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
....+|...|.+++|+|+ +.+|++|+.|+.|++||+++++....+ .+|.. .
T Consensus 228 -------~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~-~ 278 (410)
T 1vyh_C 228 -------KTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH-V 278 (410)
T ss_dssp -------EEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-C
T ss_pred -------EEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceeeEe--------------------cCCCc-e
Confidence 112356778999999997 789999999999999999876533222 33444 5
Q ss_pred eeEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCC
Q 004293 282 LTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 282 i~~v~~spd--------------------g~~l~~~s~d~~i~iwd~~~~ 311 (763)
|++++|+|+ |.+|++|+.|+.|++||+.++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999996 678999999999999998773
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6e-43 Score=363.55 Aligned_cols=215 Identities=14% Similarity=0.263 Sum_probs=183.7
Q ss_pred ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004293 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
+++..++|++|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+ ..|..+|.+++|+|+ +++|++|+.|++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence 35678899999999999999999999999999999999999999999988 789999999999999 799999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
|++||+.++ +++..+.+|.+.|.+++|+| ++.+|++|+.|++|++||++++..+
T Consensus 79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~--------------- 132 (304)
T 2ynn_A 79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL--------------- 132 (304)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred EEEEECCCC----------cEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcch---------------
Confidence 999999873 34778899999999999999 5689999999999999999875311
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
.....+|...|.+++|+|.++.+|++|+.|++|++||++.......+. .++.
T Consensus 133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~~~~ 184 (304)
T 2ynn_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------TGQE 184 (304)
T ss_dssp ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------CCCT
T ss_pred ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------cCCc
Confidence 112235778899999999767899999999999999998764332210 1222
Q ss_pred ccceeEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 004293 279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .+..+.|+| ++.+|++++.|+.|++||+.++
T Consensus 185 ~-~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 185 R-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp T-CEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred C-cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence 2 589999987 7889999999999999998773
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.3e-43 Score=369.62 Aligned_cols=214 Identities=23% Similarity=0.342 Sum_probs=183.4
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004293 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
.+..++|++|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+ ..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence 4567889999999999999999999999999999999999999999888 789999999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++|++...... ......+.+|.+.|.++.|++ + ..+++++.|++|++||+++++.
T Consensus 122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~----------------- 176 (340)
T 1got_B 122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQ----------------- 176 (340)
T ss_dssp EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEE-----------------
T ss_pred EEEECccCCCc------ceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcE-----------------
Confidence 99999864321 134567789999999999998 4 3588999999999999987652
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
+....+|...|.+++|+|+ +.+|++|+.|+.|++||++++..+..+ .+|..
T Consensus 177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~ 227 (340)
T 1got_B 177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES 227 (340)
T ss_dssp --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred --------EEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE--------------------cCCcC
Confidence 1122357788999999997 689999999999999999986543222 34554
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|++++|+|++++|++++.|+.|++||+.++
T Consensus 228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 228 -DINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 5999999999999999999999999999874
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-43 Score=366.82 Aligned_cols=210 Identities=18% Similarity=0.290 Sum_probs=174.9
Q ss_pred ccceeeccccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 41 SQERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
.+.+.+++|.+.|++++|+|+ +.+||||+.|++|+|||+.+++. ...+ .+|...|.+++|+|+ +.++++++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s 99 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSS 99 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEe
Confidence 345677899999999999984 67999999999999999987754 3345 799999999999999 79999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.|++|++||+.++ ..+..+..|...+.+++|+| ++.+|++++.||.|++||+++++..
T Consensus 100 ~D~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~----------- 157 (321)
T 3ow8_A 100 LDAHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKE----------- 157 (321)
T ss_dssp TTSEEEEEETTTT----------EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEE-----------
T ss_pred CCCcEEEEECCCC----------CEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCcee-----------
Confidence 9999999999863 34677888999999999999 6689999999999999999887521
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
.....+...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+
T Consensus 158 --------------~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~-------------------- 202 (321)
T 3ow8_A 158 --------------YSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL-------------------- 202 (321)
T ss_dssp --------------EEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred --------------EEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------------------
Confidence 011134567899999997 789999999999999999987543322
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 203 ~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 203 EGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp CCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred cccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 33544 5999999999999999999999999998763
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-43 Score=379.08 Aligned_cols=228 Identities=24% Similarity=0.377 Sum_probs=188.8
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004293 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
....+.++|+||.+.|++++|+|++++||||+.|++|+|||+.+++.+..+ ..|...|.+++|+|+ +++|++|+.|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~ 130 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDS 130 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSS
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCC
Confidence 345677899999999999999999999999999999999999999999988 799999999999999 79999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
.|++||+....... ........+.+|.+.|.++.|.|+++..|++|+.|++|++||+++++.. . .
T Consensus 131 ~v~iw~~~~~~~~~---~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-----------~-~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADRD---GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-----------S-I 195 (380)
T ss_dssp CCEEEECCCCSSCC---CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-----------E-E
T ss_pred cEEEEECCCCcccc---CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-----------E-E
Confidence 99999997532111 1123456788999999999999977788999999999999999987632 0 0
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004293 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
+ ......+|...|.+++|+|.++++|++|+.|+.|++||++.... ++..+ .+|
T Consensus 196 ~--------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~------------~~~~~-------~~h 248 (380)
T 3iz6_a 196 F--------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR------------AVRTY-------HGH 248 (380)
T ss_dssp E--------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC------------CCEEE-------CCC
T ss_pred e--------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc------------ceEEE-------CCc
Confidence 0 01122457889999999986688999999999999999984321 11111 456
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.. .|++++|+|++++|++++.|++|++||+.++
T Consensus 249 ~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 249 EG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SS-CCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 55 5999999999999999999999999999885
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-42 Score=396.81 Aligned_cols=272 Identities=15% Similarity=0.166 Sum_probs=194.8
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEE----------------
Q 004293 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSI---------------- 88 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~---------------- 88 (763)
...+.+|+ ++..+....|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ ....+
T Consensus 38 ~~~v~l~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 38 GTSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115 (611)
T ss_dssp TTEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred CCEEEEec--CCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC
Confidence 35777887 45667888999999999999999999999999999999999986432 22222
Q ss_pred ---------------------------ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004293 89 ---------------------------ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 89 ---------------------------~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
..+|...|++++|+|+. ...|++|+.|++|++||... .++..
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~----------~~~~~ 184 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPP----------FKFKS 184 (611)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTT----------BEEEE
T ss_pred CEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCC-CeEEEEEeCCCeEEEEECCC----------CeEee
Confidence 13455666667777662 23688888888899998764 23467
Q ss_pred eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004293 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
.+.+|...|.+++|+| ++.+|++++.|++|++||+.+++.. ..+... .....+|...|.++
T Consensus 185 ~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~--------------~~~~~~----~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKT--------------GVFEDD----SLKNVAHSGSVFGL 245 (611)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--------------EECBCT----TSSSCSSSSCEEEE
T ss_pred eeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEe--------------eeeccc----cccccccCCCEEEE
Confidence 7889999999999999 6789999999999999999877522 000000 00112578899999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC-------------------Cccccccc----ccccCCCCC
Q 004293 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP-------------------PCVNYFCP----MHLSEHGRS 278 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-------------------~~~~~~~~----~~~~~~g~~ 278 (763)
+|+|+ +++|++++.|++|++||+++++.+..+....... ..+..+.. ......+|.
T Consensus 246 ~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~ 324 (611)
T 1nr0_A 246 TWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN 324 (611)
T ss_dssp EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred EECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC
Confidence 99997 7899999999999999999876554432110000 00000000 000114566
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceE-eecCCCCeeeeeccC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPT 332 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~p~ 332 (763)
. .|++++|+|+|++|++++.|+.|++||+.++...... ..+...+..++|++.
T Consensus 325 ~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 325 K-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp S-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred C-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 6 6999999999999999999999999999986533221 234555666666654
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.3e-42 Score=365.11 Aligned_cols=218 Identities=18% Similarity=0.273 Sum_probs=184.0
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004293 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
.+..++|+||.+.|++++|+|++++||||+.|++|+|||..+++....+ ..|...|.+++|+|+ +.+|++|+.|+.|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence 3567889999999999999999999999999999999999999988888 688999999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++|++....... .......+.+|.+.|.+++|+| ++..|++++.|++|++||+++++..
T Consensus 131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~---------------- 189 (354)
T 2pbi_B 131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL---------------- 189 (354)
T ss_dssp EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred EEEEEecccccc----ccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE----------------
Confidence 999997532111 1133566778999999999999 5688999999999999999887521
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCC-CCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
....+|...|.+++|+|. ++++|++|+.|+.|++||+++++.+..+ .+|.
T Consensus 190 ---------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------~~h~ 240 (354)
T 2pbi_B 190 ---------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------ETHE 240 (354)
T ss_dssp ---------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCS
T ss_pred ---------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence 112356778999999885 2579999999999999999987543322 3355
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .|++++|+|++.+|++++.|++|++||++..
T Consensus 241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp S-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 4 5999999999999999999999999999873
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-41 Score=354.30 Aligned_cols=213 Identities=20% Similarity=0.330 Sum_probs=184.2
Q ss_pred ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004293 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
...+..++.+|.+.|++++|+|++++||+|+.|+.|+|||+.+++....+ .+|...|.+++|+|+ +++|++++.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence 35667889999999999999999999999999999999999999998888 799999999999999 799999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
|++||+.++ .++..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++..
T Consensus 89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--------------- 142 (312)
T 4ery_A 89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCL--------------- 142 (312)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEE---------------
T ss_pred EEEEECCCC----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEE---------------
Confidence 999999863 34778889999999999999 6689999999999999999876521
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
.....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+. .+.
T Consensus 143 ----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------------~~~ 191 (312)
T 4ery_A 143 ----------KTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLI--------------------DDD 191 (312)
T ss_dssp ----------EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CSS
T ss_pred ----------EEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEEe--------------------ccC
Confidence 112346678999999997 7899999999999999999875432221 112
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
...+..++|+|++++|++++.|+.|++||+.++
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 225999999999999999999999999999874
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=366.20 Aligned_cols=219 Identities=17% Similarity=0.248 Sum_probs=181.3
Q ss_pred ccccceeeccccC-ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004293 39 RLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 39 ~~~~~~~l~gH~~-~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
.++++.+|++|.+ .|++++|+|+|++||+|+.|++|+|||+.++... ..+..+|...|.+++|+|+ +++|++|+.
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEEC
Confidence 4567889999988 9999999999999999999999999999887643 3344689999999999999 799999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004293 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
|++|++||+..... .++..+.+|...|.+++|+| ++.+|++++.|++|++||++.....
T Consensus 82 D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~------------ 140 (345)
T 3fm0_A 82 DATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY------------ 140 (345)
T ss_dssp TSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE------------
T ss_pred CCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe------------
Confidence 99999999986331 34677889999999999999 6789999999999999999875421
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004293 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
..+.....|...|.+++|+|+ +.+|++|+.|+.|++||.+.++.. +...+ .
T Consensus 141 ----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~-------~ 191 (345)
T 3fm0_A 141 ----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWV-----------CCATL-------E 191 (345)
T ss_dssp ----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-----------EEEEE-------C
T ss_pred ----------EEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-----------EEEEe-------c
Confidence 111222356788999999997 689999999999999998764311 11111 3
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+|.. .|++++|+|+|++|++++.|++|++|+...
T Consensus 192 ~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 192 GHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 4555 699999999999999999999999999755
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-42 Score=392.67 Aligned_cols=285 Identities=14% Similarity=0.132 Sum_probs=207.7
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCC
Q 004293 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 107 (763)
.+.+|+ ..+....|.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+ .+|...|.+++|+|+ +
T Consensus 130 ~v~~wd----~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd--g 202 (611)
T 1nr0_A 130 HVFLFD----TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD--G 202 (611)
T ss_dssp EEEETT----TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT--S
T ss_pred EEEEee----CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC--C
Confidence 566666 2356678999999999999999987 6999999999999999999998888 799999999999999 7
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee-------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004293 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
++|++|+.|++|++||+.++. ++..+. +|.+.|.+++|+| ++.+|++++.|++|++||++++
T Consensus 203 ~~las~s~D~~i~lwd~~~g~----------~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGT----------KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCC----------EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT
T ss_pred CEEEEEECCCcEEEEECCCCc----------EeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCC
Confidence 999999999999999988632 233332 7999999999999 6689999999999999999887
Q ss_pred CCCCCCCC--------------------CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004293 181 SSCPPAGS--------------------SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 181 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
+....... ........+|+...+. ......+|...|++++|+|+ +++|++++.|+.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~gh~~~v~~l~~spd-g~~l~s~s~D~~v 348 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSAD-GKTLFSADAEGHI 348 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE--EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC--cceEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcE
Confidence 54311100 0011122344443332 22334578899999999997 7899999999999
Q ss_pred EEEeCCCCCCCcccCCCCC---------CCC---------cccc--------------------------ccccc-----
Q 004293 241 RLYDRRMLPPLTSCQKRMS---------PPP---------CVNY--------------------------FCPMH----- 271 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~---------~~~---------~~~~--------------------------~~~~~----- 271 (763)
++||+.++.....+...+. +.. .++. +.+..
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~ 428 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428 (611)
T ss_dssp EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence 9999988754332211000 000 0000 00000
Q ss_pred -------------ccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc-ceEeecCCCCeeeeeccCCCC
Q 004293 272 -------------LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNG 335 (763)
Q Consensus 272 -------------~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~~~ 335 (763)
+....+. ..+++++|+|||++|++|+.|+.|++||+.++... .....+...+..++|+|+.+.
T Consensus 429 ~~~~~v~~~~~~~~~~~~~~-~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 429 ACYKHIAIYSHGKLTEVPIS-YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp EESSEEEEEETTEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred EeCceEEEEeCCceeeeecC-CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence 0000011 24889999999999999999999999999875321 223566778889999997543
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-42 Score=361.85 Aligned_cols=208 Identities=18% Similarity=0.173 Sum_probs=160.3
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC------------CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
..|...|.+++|+|||++|++++ |+++++||... +..... ..|...|.+++|+|+ ..|++|+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---~~l~~~s 100 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGE---RGILVAS 100 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETT---TEEEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCC---CeEEEEE
Confidence 35778899999999999999888 67888887321 111111 235678999999998 5788999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.||+|+|||+.+++... .....+.+|.+.|++|+|+| ++.+|++|+.|++|++||+++++.
T Consensus 101 ~dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~------------ 161 (344)
T 4gqb_B 101 DSGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV------------ 161 (344)
T ss_dssp TTSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE------------
T ss_pred CCCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE------------
Confidence 99999999998743211 11233458999999999999 678999999999999999988752
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
+....+|...|++++|+|++..+|++++.|++|++||+++++....+..
T Consensus 162 -------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------ 210 (344)
T 4gqb_B 162 -------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------ 210 (344)
T ss_dssp -------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------
T ss_pred -------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------
Confidence 2223467889999999998767899999999999999998765433210
Q ss_pred CCCCccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 004293 275 HGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 275 ~g~~~~~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~~ 311 (763)
..+. ..+++++|+|+ +++|++|+.|+.|++||++++
T Consensus 211 ~~~~-~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 211 SAPG-YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp ---C-CCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred ceee-ccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 1122 24899999995 567889999999999998873
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-42 Score=363.04 Aligned_cols=211 Identities=18% Similarity=0.180 Sum_probs=159.4
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeC------CCcEEEEeCCCCeEEE----EEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 45 ELEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLH----SIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~------D~~v~iWd~~~~~~~~----~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
...+|...|++|+|+|||++||+|+. |+.|++|+..++.... .. .+|...|.+++|+|+ + .+++++
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s~d--~-~~l~~s 112 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWVSE--K-GILVAS 112 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEETT--T-EEEEEE
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEcCC--C-CEEEEE
Confidence 34579999999999999999999997 7789999987765322 22 468889999999998 4 566788
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.||+|+|||+.+++... .......+|.+.|++|+|+| ++.+|++++.|++|++||+++++.
T Consensus 113 ~dg~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~------------ 173 (357)
T 4g56_B 113 DSGAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV------------ 173 (357)
T ss_dssp TTSCEEEC--------C------CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE------------
T ss_pred CCCEEEEeeccccceeE------EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE------------
Confidence 99999999998754221 11234457999999999999 668999999999999999988652
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
+.....|...|++++|+|++..++++++.|+.|++||+++++....+..
T Consensus 174 -------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------ 222 (357)
T 4g56_B 174 -------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------ 222 (357)
T ss_dssp -------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------
T ss_pred -------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------
Confidence 1222457788999999998667899999999999999998765432210
Q ss_pred CCCCccceeEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004293 275 HGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~ 310 (763)
..+.. .+++++|+|++ .+|++++.|+.|++||+.+
T Consensus 223 ~~~~~-~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 223 CASDT-IPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp TTCCS-CEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred ccccc-cccchhhhhcccceEEEeecccceeEEECCC
Confidence 11222 59999999975 6788899999999999877
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-40 Score=375.45 Aligned_cols=356 Identities=22% Similarity=0.323 Sum_probs=288.4
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
...++.+++|+ ...+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+|...|.+++|+|
T Consensus 198 ~~~d~~v~~w~---~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~-~~~~~~v~~v~~~~ 272 (577)
T 2ymu_A 198 ASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVNGVAFRP 272 (577)
T ss_dssp EETTSEEEEEC---TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEE-CCCSSCEEEEEECT
T ss_pred EcCCCEEEEEe---CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEE-ecCCCCEEEEEEcC
Confidence 34567888887 345778889999999999999999999999999999999996 46677777 79999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+ +..|++++.|+.|++||... ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||+....
T Consensus 273 d--~~~l~~~~~d~~i~~w~~~~-----------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~-- 336 (577)
T 2ymu_A 273 D--GQTIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH-- 336 (577)
T ss_dssp T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE--
T ss_pred C--CCEEEEEeCCCEEEEEeCCC-----------cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe--
Confidence 9 79999999999999999763 34677889999999999999 66899999999999999976532
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
+.....|...|.+++|+|+ +++|++|+.|+.|++||.. ++.+
T Consensus 337 ------------------------~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~~-~~~~------------ 378 (577)
T 2ymu_A 337 ------------------------LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQLL------------ 378 (577)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETT-CCEE------------
T ss_pred ------------------------eEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEcCC-CCEE------------
Confidence 1112346678999999997 7899999999999999964 2222
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCCCcccCCCCC
Q 004293 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 343 (763)
..+ .+|.. .|++++|+|+|++|++++.|+.|++||... +.......+...+..++|+|+...+.....
T Consensus 379 -~~~-------~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-- 446 (577)
T 2ymu_A 379 -QTL-------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASD-- 446 (577)
T ss_dssp -EEE-------ECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred -EEe-------cCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcC--
Confidence 111 23444 599999999999999999999999999654 444455566677777888886432210000
Q ss_pred cccccccccccccccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccch
Q 004293 344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDA 423 (763)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 423 (763)
T Consensus 447 -------------------------------------------------------------------------------- 446 (577)
T 2ymu_A 447 -------------------------------------------------------------------------------- 446 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHhHHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcccCCCCCC
Q 004293 424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG 503 (763)
Q Consensus 424 ~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (763)
T Consensus 447 -------------------------------------------------------------------------------- 446 (577)
T 2ymu_A 447 -------------------------------------------------------------------------------- 446 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccchhcccccCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCCcccccccccCCcceeeeccCCCc
Q 004293 504 ARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA 583 (763)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 583 (763)
T Consensus 447 -------------------------------------------------------------------------------- 446 (577)
T 2ymu_A 447 -------------------------------------------------------------------------------- 446 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCcccccccceEEeeecccccceeeeeeccCCCCEEEEecCCCcEEEEEcCcCcEEE
Q 004293 584 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK 663 (763)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~ 663 (763)
...+.+ |....+.++.+.+|...++++. |+||+++||+|+.|++|+|||. ++++++
T Consensus 447 ------------------d~~v~~-w~~~~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw~~-~~~~~~ 502 (577)
T 2ymu_A 447 ------------------DKTVKL-WNRNGQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLWNR-NGQLLQ 502 (577)
T ss_dssp ------------------TSEEEE-EETTSCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred ------------------CCEEEE-EECCCCEEEEEcCCCCCEEEEE----EcCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 000000 1112335667889999988877 9999999999999999999995 799999
Q ss_pred EEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCCCCCCCh
Q 004293 664 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 715 (763)
Q Consensus 664 ~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g~~~~~~ 715 (763)
.+.+|.+.|++|+|+|++++|||++.|++|||||. +++.+..+.||.++++
T Consensus 503 ~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 553 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence 99999999999999999999999999999999996 6778889999999875
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-40 Score=356.91 Aligned_cols=209 Identities=20% Similarity=0.304 Sum_probs=168.3
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC------------------CceEEEEEeeCCCCcE
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL 109 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~------------------~~V~~v~~~p~~~~~~ 109 (763)
+|.+.|++++|+|+|++||+|+ |++++||++.+++.+..+ ..|. ..|.+++|+|+ +++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence 6999999999999999999987 689999999999988877 4443 24999999999 799
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004293 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (763)
Q Consensus 110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 189 (763)
|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..
T Consensus 138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~------ 200 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------ 200 (393)
T ss_dssp EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE------
Confidence 999999999999999863 34677889999999999999 6689999999999999999886521
Q ss_pred CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004293 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
..+ .+...+.+++|+|.++.+|++|+.|+.|++||++++..+..+..
T Consensus 201 -----~~~---------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~------------- 247 (393)
T 1erj_A 201 -----LTL---------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS------------- 247 (393)
T ss_dssp -----EEE---------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred -----EEE---------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-------------
Confidence 111 12346899999996589999999999999999998754432211
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 270 ~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
......+|.. .|++++|+|+|++|++++.|+.|++||+.+.
T Consensus 248 ~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 248 ENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 0111134555 6999999999999999999999999999873
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-40 Score=345.14 Aligned_cols=213 Identities=18% Similarity=0.290 Sum_probs=178.8
Q ss_pred hccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEEccCCCCceEEEEEeeCCCCcEEE
Q 004293 38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVV 111 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~ 111 (763)
+.+.+..+|+||.+.|++++|+|++ ++|+||+.|++|++||+.+ +..+..+ .+|...|.+++|+|+ +.+|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~ 81 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYAL 81 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEE
Confidence 3466778899999999999999965 8999999999999999864 3346667 799999999999999 79999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004293 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 191 (763)
+|+.|++|++||+.++ +++..+.+|...|.+++|+| ++.+|++++.|++|++||++...
T Consensus 82 s~s~D~~v~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~---------- 140 (319)
T 3frx_A 82 SASWDKTLRLWDVATG----------ETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC---------- 140 (319)
T ss_dssp EEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE----------
T ss_pred EEeCCCEEEEEECCCC----------CeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----------
Confidence 9999999999999873 34778899999999999999 66899999999999999986432
Q ss_pred ccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-----CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-----PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-----~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
+....+|...|.+++|.|.. +.+|++++.|+.|++||+++.+....+
T Consensus 141 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------ 192 (319)
T 3frx_A 141 ----------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------------ 192 (319)
T ss_dssp ----------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE------------
T ss_pred ----------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee------------
Confidence 11123567789999999852 348999999999999999875432211
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|+|++|++++.|+.|++||+.++
T Consensus 193 --------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 193 --------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred --------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 34555 6999999999999999999999999999873
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.6e-40 Score=373.63 Aligned_cols=242 Identities=21% Similarity=0.335 Sum_probs=198.3
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
...++.+++|+. ..+.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|
T Consensus 239 ~~~d~~i~~w~~---~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 239 ASDDKTVKLWNR---NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSP 313 (577)
T ss_dssp EETTSCEEEECT---TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECT
T ss_pred EeCCCEEEEEeC---CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECC
Confidence 345678888873 456788899999999999999999999999999999999964 5667777 79999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+ +.+|++++.|+.|++||... ..+..+.+|...|.+++|+| ++.++++++.||.|++||.....
T Consensus 314 ~--~~~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~-- 377 (577)
T 2ymu_A 314 D--GQTIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQL-- 377 (577)
T ss_dssp T--SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCE--
T ss_pred C--CCEEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCE--
Confidence 9 79999999999999999874 33677888999999999999 67899999999999999953221
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
+.....|...|.+++|+|+ +++|++++.|+.|++||.. ++.+.
T Consensus 378 ------------------------~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~~~-~~~~~----------- 420 (577)
T 2ymu_A 378 ------------------------LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQ----------- 420 (577)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-CCEEE-----------
T ss_pred ------------------------EEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCC-CCEEE-----------
Confidence 1112246678999999997 7899999999999999964 22211
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004293 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (763)
.+ .+|.. .|++++|+|++++|++++.|+.|++||... +.......+...+..++|+|+..
T Consensus 421 --~~-------~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 421 --TL-------TGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp --EE-------ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSC
T ss_pred --Ee-------cCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCC
Confidence 11 23544 599999999999999999999999999754 55555666777788888988643
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-40 Score=345.48 Aligned_cols=224 Identities=14% Similarity=0.171 Sum_probs=171.9
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccC-CCCceEEEEEeeCCCCcEEEEEe
Q 004293 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
+.+++++.|++|.+.|++++|+|+ +||+|+.|++|+|||+.++ +.+..+..+ |...|.+++|+|+ +.+|++|+
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s 77 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS 77 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence 456778899999999999999987 9999999999999999875 455555234 9999999999999 79999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.|++|+|||+...... .....++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.....
T Consensus 78 ~D~~v~iw~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~----------- 142 (330)
T 2hes_X 78 FDSTVSIWAKEESADR---TFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE----------- 142 (330)
T ss_dssp TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCC-----------
T ss_pred CCCcEEEEEcccCcCc---cccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCC-----------
Confidence 9999999999642110 001234667889999999999999 6789999999999999999643210
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
...+....+|...|.+++|+|+ +.+|++|+.|++|++||.+++.. .++..+
T Consensus 143 ----------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~~------- 193 (330)
T 2hes_X 143 ----------YECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-----------ECVAVL------- 193 (330)
T ss_dssp ----------CEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-----------EEEEEE-------
T ss_pred ----------eEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-----------eEEEEc-------
Confidence 0112223457788999999997 78999999999999999875410 111111
Q ss_pred CCCCccceeEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 004293 275 HGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 275 ~g~~~~~i~~v~~spd--g~~l~~~s~d~~i~iwd~~~ 310 (763)
.+|.. .|.+++|+|+ +.+|++++.|++|++||+..
T Consensus 194 ~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 194 NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 45655 6999999998 77899999999999999876
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-39 Score=344.75 Aligned_cols=213 Identities=20% Similarity=0.283 Sum_probs=175.5
Q ss_pred ccccceeeccccCceEEEEe-----CC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEEccCCCCceEEEEEeeCC
Q 004293 39 RLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~f-----sp-~g~~Lasgs~D~~v~iWd~~~~-------~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
.+++..+|+||.+.|++++| ++ ++++||||+.|++|+|||+.++ .....+ .+|...|.+++|+|+
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~- 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE- 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS-
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC-
Confidence 35667889999999999999 76 9999999999999999998753 445566 799999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004293 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
+.+|++|+.|++|++||++++ .++..+.+|...|.+++|+| ++.+|++++.|++|++||+.....
T Consensus 88 -~~~l~s~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~--- 152 (343)
T 2xzm_R 88 -NCFAISSSWDKTLRLWDLRTG----------TTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK--- 152 (343)
T ss_dssp -TTEEEEEETTSEEEEEETTSS----------CEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---
T ss_pred -CCEEEEEcCCCcEEEEECCCC----------cEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---
Confidence 799999999999999999873 34778889999999999999 668999999999999999874320
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC---------CcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004293 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~---------~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~ 256 (763)
........|...|.+++|+|+. +.+|++++.|+.|++||... +.
T Consensus 153 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~------ 205 (343)
T 2xzm_R 153 --------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI------ 205 (343)
T ss_dssp --------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE------
T ss_pred --------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce------
Confidence 1112223567789999999973 26899999999999999432 11
Q ss_pred CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
...+ .+|.. .|++++|+|+|++|++++.|+.|++||+..
T Consensus 206 -------~~~~-------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 206 -------RYTF-------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp -------EEEE-------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred -------eEEE-------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 1111 33554 599999999999999999999999999855
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-38 Score=334.18 Aligned_cols=224 Identities=21% Similarity=0.304 Sum_probs=179.0
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCe-----EEEEEccCCCCceEEEEEe
Q 004293 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~-----~~~~~~~~h~~~V~~v~~~ 102 (763)
.+.++....+++.+..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+ ....+ .+|...|.+++|+
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s 95 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEEC
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEEC
Confidence 455566667788888999999999999999997 6899999999999999987643 45566 7999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004293 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|+ +.+|++++.|+.|++|+.... ........+...+..+.+++ .+.+|++++.|+.+++||+.....
T Consensus 96 ~d--g~~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 96 SD--GQFALSGSWDGTLRLWDLTTG----------TTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp TT--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE
T ss_pred CC--CCEEEEEcccccceEEeeccc----------ceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce
Confidence 99 799999999999999999863 23555667888899999998 568889999999999999876531
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004293 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.......|...+..++|+++. ..++++++.|+.|++||+++++.+..+
T Consensus 163 ------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~------- 211 (340)
T 4aow_A 163 ------------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH------- 211 (340)
T ss_dssp ------------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-------
T ss_pred ------------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-------
Confidence 122233567788999998864 347889999999999999986543222
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|++++|++++.|+.|++||+.+.
T Consensus 212 -------------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 212 -------------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp -------------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred -------------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 34555 6999999999999999999999999998873
No 20
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-38 Score=393.62 Aligned_cols=250 Identities=21% Similarity=0.346 Sum_probs=201.0
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
...++.|++|+ ..+.+.+..+++|.+.|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|
T Consensus 633 ~~~d~~i~vw~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~ 709 (1249)
T 3sfz_A 633 CGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTN 709 (1249)
T ss_dssp EETTSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECS
T ss_pred EeCCCeEEEEE--CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEec
Confidence 34578899998 5667788999999999999999999999999999999999999999999998 79999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+.++.++++|+.|+.|++||+.++ .+...+.+|.+.|.+++|+| ++.++++++.||.|++||+++++..
T Consensus 710 ~~~~~~l~sg~~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~ 778 (1249)
T 3sfz_A 710 KSNHLLLATGSNDFFLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANER 778 (1249)
T ss_dssp SSSCCEEEEEETTSCEEEEETTSS----------SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEE
T ss_pred CCCceEEEEEeCCCeEEEEECCCc----------chhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccc
Confidence 654779999999999999999873 34778889999999999999 6689999999999999999876421
Q ss_pred CCC----------------------CCCC---------cccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE
Q 004293 184 PPA----------------------GSSH---------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (763)
Q Consensus 184 ~~~----------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~ 232 (763)
... ..-. ......+|+...+..... ...+|...|.+++|+|+ +.+++
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp~-~~~l~ 856 (1249)
T 3sfz_A 779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSPY-DHLAV 856 (1249)
T ss_dssp EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECSS-TTEEE
T ss_pred ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcCCCCCceEEEEEcCC-CCEEE
Confidence 000 0000 011233444444332211 12357788999999997 78999
Q ss_pred EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 233 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+++.|+.|++||+.++..+..+ .+|.. .|++++|+|+|++|++++.|+.|++|++.+
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEeCCCeEEEEEcCCCceeeec--------------------CCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 9999999999999976543222 34555 599999999999999999999999999754
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.4e-38 Score=342.25 Aligned_cols=220 Identities=13% Similarity=0.168 Sum_probs=174.6
Q ss_pred ccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEE-ccCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004293 39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGD 116 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~l~s~s~d 116 (763)
.+++.....+|...|+||+|+| ++++||+|+.||+|+|||+.+++....+ ..+|.+.|++|+|+|.. +.+|++|+.|
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D 186 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSME 186 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCC
Confidence 4455667788999999999999 5679999999999999999877543332 25899999999999953 7899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004293 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
|+|++||++.... ........+...+.+++|+| ++.+|++|+.||.|++||++...
T Consensus 187 ~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 187 GTTRLQDFKGNIL--------RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp SCEEEEETTSCEE--------EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred CEEEEeeccCCce--------eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce---------------
Confidence 9999999985211 11122223445688999999 67899999999999999987542
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004293 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
+....+|...|++++|+|++..+|++|+.|+.|+|||+++.+....+. ...+
T Consensus 243 -----------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~-----------------~~~~ 294 (435)
T 4e54_B 243 -----------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL-----------------YSLP 294 (435)
T ss_dssp -----------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS-----------------BCCB
T ss_pred -----------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE-----------------Eeee
Confidence 222345778899999999877799999999999999999865432221 1123
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
|.. .|++|+|+|+|.+|++++.|+.|++||+.++.
T Consensus 295 h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 295 HRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp CSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred ccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 554 59999999999999999999999999998854
No 22
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-37 Score=333.53 Aligned_cols=219 Identities=12% Similarity=0.193 Sum_probs=178.2
Q ss_pred hhccccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
..++++.+.+.+|.+.|++++|+|++ ++||+|+.|+.|+|||+.+++....+. .+|...|.+++|+|+. +.+|++++
T Consensus 60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~ 138 (383)
T 3ei3_B 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSS 138 (383)
T ss_dssp HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEE
T ss_pred ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEe
Confidence 45677888999999999999999999 999999999999999999888777663 3799999999999942 68999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeee---cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 191 (763)
.|+.|++||+... .+..+. .|...|.+++|+| ++.+|++++.|+.|++||++...
T Consensus 139 ~d~~i~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~---------- 196 (383)
T 3ei3_B 139 IRGATTLRDFSGS-----------VIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHE---------- 196 (383)
T ss_dssp TTTEEEEEETTSC-----------EEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSCE----------
T ss_pred CCCEEEEEECCCC-----------ceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCCE----------
Confidence 9999999999852 234443 4458899999999 66899999999999999984221
Q ss_pred ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccc
Q 004293 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (763)
+.....|...|.+++|+|++..+|++++.|+.|++||+++.+... .++..+
T Consensus 197 ----------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~---- 247 (383)
T 3ei3_B 197 ----------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN---------SYIAEM---- 247 (383)
T ss_dssp ----------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT---------CEEEEE----
T ss_pred ----------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc---------ceEEEe----
Confidence 111224678899999999854499999999999999999753211 111111
Q ss_pred ccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCCC
Q 004293 272 LSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 272 ~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+|.. .|++++|+| ++.+|++++.|+.|++||+.++.
T Consensus 248 ----~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 248 ----PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp ----ECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred ----cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 2333 599999999 99999999999999999999864
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=322.52 Aligned_cols=223 Identities=17% Similarity=0.267 Sum_probs=178.9
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004293 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
......|++|.+.|++++|+|+|++|++|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++++.|+.|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg~i 98 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADYSI 98 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCCeE
Confidence 4455678999999999999999999999999999999999999999998 799999999999998 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCcccc
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
++||+.++ ..+..+. |...|.+++|+| ++.++++++.+ +.|++||++........
T Consensus 99 ~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------- 158 (369)
T 3zwl_B 99 KLWDVSNG----------QCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------- 158 (369)
T ss_dssp EEEETTTC----------CEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------
T ss_pred EEEECCCC----------cEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceee--------
Confidence 99999863 3355555 889999999999 66899999998 99999999887643111
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCccccccccccc
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
..........+. .......+.+++|+|+ +++|++++.|+.|++||+++ ...+..+
T Consensus 159 ---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------- 214 (369)
T 3zwl_B 159 ---TKVSEEPIHKII-THEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSI------------------- 214 (369)
T ss_dssp ---EEECSSCSEEEE-CCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEE-------------------
T ss_pred ---cccccceeeecc-CCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEE-------------------
Confidence 111100001111 1112238999999997 78999999999999999987 3222111
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 215 -~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 215 -DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp -ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred -ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 22333 5999999999999999999999999999874
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-38 Score=340.00 Aligned_cols=243 Identities=16% Similarity=0.225 Sum_probs=187.1
Q ss_pred ccccccccchhhhhcc-ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC----CeEEEEEccCCCCceEEE
Q 004293 25 DVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCT 99 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~----~~~~~~~~~~h~~~V~~v 99 (763)
..+..+++|+...... +++..+ +|...|++++|+|++++|++|+.|+.|++||+.+ .+.+..+ .+|...|.++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~ 119 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTV 119 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEE
Confidence 5677899998544332 244444 5899999999999999999999999999999987 3466666 7899999999
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004293 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+|+|+. +.+|++++.|+.|++||+.......... .......+..|...|.+++|+|+++.+|++++.||.|++||+++
T Consensus 120 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 120 KFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp EECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred EEcCCC-CCEEEEEcCCCeEEEEECCCCccccccc-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 999984 6899999999999999998753110000 00112345679999999999996689999999999999999988
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---cEEEEeCCCCC-CCcccC
Q 004293 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLP-PLTSCQ 255 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg---~i~iwd~~~~~-~~~~~~ 255 (763)
++.. ..+.. .....+|...|.+++|+|++..+|++++.|+ .|++||++++. .+..+
T Consensus 198 ~~~~--------------~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~- 257 (416)
T 2pm9_A 198 KKEV--------------IHLSY-----TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL- 257 (416)
T ss_dssp TEEE--------------EEECC-----CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC-
T ss_pred CCcc--------------eEEec-----cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe-
Confidence 6522 10000 0001233678999999998667999999999 99999999763 22211
Q ss_pred CCCCCCCcccccccccccCC-CCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004293 256 KRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~-g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. +|.. .|++++|+| ++++|++++.|+.|++||+.++
T Consensus 258 -------------------~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 258 -------------------NQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp -------------------CSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred -------------------ecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 2 3544 599999999 9999999999999999998773
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=336.28 Aligned_cols=236 Identities=11% Similarity=0.160 Sum_probs=176.9
Q ss_pred ccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeC----CCCe------EEEEEccC----------CCCceEEEEEeeCC
Q 004293 47 EGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIETG----------HSANVFCTKFVPET 105 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~----~~~~------~~~~~~~~----------h~~~V~~v~~~p~~ 105 (763)
..|.+.|++++|+|+|+ +||+|+.|+.|++||+ .+++ ....+ .. |...|.+++|+|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~- 119 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHD- 119 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTT-
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCC-
Confidence 44669999999999999 9999999999999999 8887 44444 22 6789999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 004293 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 185 (763)
+.+|++++.||.|++||... ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++...
T Consensus 120 -~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~- 185 (425)
T 1r5m_A 120 -GNSIVTGVENGELRLWNKTG-----------ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQ- 185 (425)
T ss_dssp -SSEEEEEETTSCEEEEETTS-----------CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEE-
T ss_pred -CCEEEEEeCCCeEEEEeCCC-----------CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEE-
Confidence 79999999999999999432 44778889999999999999 66899999999999999998775321
Q ss_pred CCCCCcccceEEEecCCCce--eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004293 186 AGSSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
.+....... ............+.+++|+|+ ..+++++.|+.|++||+++++.+..+
T Consensus 186 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~--------- 243 (425)
T 1r5m_A 186 -----------HFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL--------- 243 (425)
T ss_dssp -----------EECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE---------
T ss_pred -----------EeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee---------
Confidence 000000000 000000111223788999996 47999999999999999987544322
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004293 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
.+|.. .|++++|+|++++|++++.|+.|++||+.++........+...+..++|+|+
T Consensus 244 -----------~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 244 -----------IGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp -----------CCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred -----------ccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence 23444 5999999999999999999999999999987655555556667777778774
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.5e-37 Score=330.39 Aligned_cols=230 Identities=16% Similarity=0.155 Sum_probs=175.0
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEeeC--CCC---cE
Q 004293 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---EL 109 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~p~--~~~---~~ 109 (763)
...+.+++|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+ .+|...|.+++|+|+ .++ .+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence 45678899999999999998 899999999999999999887 67777 689999999999997 116 79
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc-----cCceeEEEEe----cCCCCE-EEEEeCCCcEEEEECCC
Q 004293 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 110 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~s----p~~~~~-l~s~s~dg~i~iwd~~~ 179 (763)
|++++.|+.|++||+....... ...+..+..| ...|.+++|+ | ++.+ |++++.||.|++||++.
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred EEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999998743110 0115667778 5999999999 8 5577 99999999999999988
Q ss_pred ------CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004293 180 ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (763)
Q Consensus 180 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 253 (763)
.+..... ....+.. .+.....+...|.+++|+|+ + +|++++.|+.|++||+++++.+..
T Consensus 158 ~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 158 FADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp SSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred cccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE
Confidence 4432100 0001100 01111345678999999997 5 999999999999999997654332
Q ss_pred cCCCCCCCCcccccccccccCCCC---CccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCC
Q 004293 254 CQKRMSPPPCVNYFCPMHLSEHGR---SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAG 312 (763)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~---~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~~ 312 (763)
+.. ..+| .. .|++++|+|++++|++++.| +.|++||+.++.
T Consensus 223 ~~~-----------------~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 223 FES-----------------QHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EEC-----------------CC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred Eec-----------------cccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 210 0113 33 69999999999999999999 999999998753
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=330.20 Aligned_cols=186 Identities=16% Similarity=0.200 Sum_probs=156.5
Q ss_pred EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE
Q 004293 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (763)
Q Consensus 86 ~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 165 (763)
..+ .+|..+|++++|+|+ +.+|++|+.|++|++||+.++ .....+.+|.+.|.+++|+| ++.+|++
T Consensus 102 ~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~----------~~~~~l~~h~~~V~~v~~~~-~~~~l~s 167 (410)
T 1vyh_C 102 YAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISFDH-SGKLLAS 167 (410)
T ss_dssp CEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred Eee-cccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------cEEEEEeccCCcEEEEEEcC-CCCEEEE
Confidence 344 689999999999999 799999999999999999873 34678899999999999999 6689999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeC
Q 004293 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (763)
Q Consensus 166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~ 245 (763)
|+.|++|++||+.+.+. +....+|...|.+++|+|+ +++|++|+.|++|++||+
T Consensus 168 gs~D~~i~iwd~~~~~~-------------------------~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFEC-------------------------IRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp EETTSCCCEEETTSSCE-------------------------EECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred EeCCCeEEEEeCCCCce-------------------------eEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence 99999999999987642 2334467889999999997 789999999999999999
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCe
Q 004293 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (763)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 325 (763)
+++..+..+ .+|.. .|++++|+|++.+|++++.|+.|++||+.++........+...+.
T Consensus 222 ~~~~~~~~~--------------------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~ 280 (410)
T 1vyh_C 222 QTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280 (410)
T ss_dssp TTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCcEEEEE--------------------eCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEE
Confidence 987543322 34554 599999999999999999999999999998766555666677777
Q ss_pred eeeeccC
Q 004293 326 IMSFTPT 332 (763)
Q Consensus 326 ~~~~~p~ 332 (763)
.++|+|.
T Consensus 281 ~~~~~~~ 287 (410)
T 1vyh_C 281 CISWAPE 287 (410)
T ss_dssp EEEECCS
T ss_pred EEEEcCc
Confidence 7777774
No 28
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=340.06 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=171.0
Q ss_pred hccccceee-ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCC---Ce---EEEEEccCCCCceEEEEEeeCCCCcE
Q 004293 38 RRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RK---LLHSIETGHSANVFCTKFVPETSDEL 109 (763)
Q Consensus 38 ~~~~~~~~l-~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~---~~---~~~~~~~~h~~~V~~v~~~p~~~~~~ 109 (763)
.+.+++..| ++|.+.|++++|+| ++++||+|+.|++|+|||+.+ +. ....+ +|...|.+++|+|+ +.+
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~ 125 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN--FDA 125 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT--SSE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC--CCE
Confidence 456778888 89999999999999 999999999999999999876 43 23333 58999999999998 799
Q ss_pred EEEEeCCCcEEEEECCCC-CCCCCCCCCCCCceeee--c--ccCceeEEE--EecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004293 110 VVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQ--C--HTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 110 l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~--~--h~~~v~~l~--~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
|++|+.||.|++||+... .+..........+..+. . +...+.++. ++| ++.+|++++.||.|++||+++++.
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee
Confidence 999999999999999521 11110000000111111 1 455666666 445 568999999999999999988752
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004293 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
. ..+ ....|...|++++|+|+ +++|++|+.||.|++||+++++.+..+.
T Consensus 205 ~-----------~~~------------~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------- 253 (437)
T 3gre_A 205 L-----------QII------------ENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWS------- 253 (437)
T ss_dssp E-----------EEE------------ECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEB-------
T ss_pred e-----------EEE------------ccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEe-------
Confidence 1 111 11125678999999997 7899999999999999999865433221
Q ss_pred cccccccccccCCCCCccceeEEEEc----CCCCEEEEEeCCCeEEEEECCCCCccceEee
Q 004293 263 CVNYFCPMHLSEHGRSSLHLTHVTFS----PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~s----pdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~ 319 (763)
.+|.. .|++++|+ |++.+|++++.|+.|++||+.++........
T Consensus 254 ------------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 301 (437)
T 3gre_A 254 ------------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN 301 (437)
T ss_dssp ------------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred ------------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence 12333 59999665 4688999999999999999998654333333
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-36 Score=315.66 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=139.9
Q ss_pred EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004293 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (763)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 163 (763)
..+++ .+|...|.+++|+|+ +.+|++++.||+|++||+.++ ..+..+..|..+|.+++|+| ++++|
T Consensus 5 ~~~~~-~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l 70 (304)
T 2ynn_A 5 IKKTF-SNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQ----------VEVRSIQVTETPVRAGKFIA-RKNWI 70 (304)
T ss_dssp CEEEE-EEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEEEG-GGTEE
T ss_pred eEEee-cCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCC----------ceeEEeeccCCcEEEEEEeC-CCCEE
Confidence 34556 789999999999999 799999999999999999863 34678889999999999999 67899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004293 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (763)
Q Consensus 164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw 243 (763)
++|+.|++|++||+.+++.. ....+|...|.+++|+|+ +.+|++|+.|++|++|
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~-------------------------~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKV-------------------------VDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLW 124 (304)
T ss_dssp EEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEE-------------------------EEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence 99999999999999887521 122357788999999997 6899999999999999
Q ss_pred eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004293 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|++++..+ ...+ .+|.. .|++++|+| ++.+|++++.|+.|++||+...
T Consensus 125 d~~~~~~~------------~~~~-------~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 125 NWENNWAL------------EQTF-------EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp EGGGTTEE------------EEEE-------CCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred ECCCCcch------------hhhh-------cccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99865321 1111 34555 599999999 6789999999999999998763
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-36 Score=351.15 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=178.6
Q ss_pred cccceeeccccCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCC-----eEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004293 40 LSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
+++...|++|.+.|++|+|+|++ ++|+||+.|++|+|||+.+. .....+ .+|...|.+++|+|+ +++|++|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~sg 448 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALSG 448 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEEE
Confidence 45556799999999999999864 79999999999999999753 345566 799999999999999 7999999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004293 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
+.|++|+|||+.++ .....+.+|...|.+++|+| ++.+|++++.|++|++||+.....
T Consensus 449 s~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~----------- 506 (694)
T 3dm0_A 449 SWDGELRLWDLAAG----------VSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK----------- 506 (694)
T ss_dssp ETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-----------
T ss_pred eCCCcEEEEECCCC----------cceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc-----------
Confidence 99999999999863 34678889999999999999 668899999999999999764321
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004293 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (763)
. .......+|...|.+++|+|+. ..+|++|+.|+.|++||+++.+....+
T Consensus 507 -~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------ 557 (694)
T 3dm0_A 507 -Y----------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------------------ 557 (694)
T ss_dssp -E----------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------------------
T ss_pred -e----------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence 0 0111224577889999999974 258999999999999999876533222
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|+|++|++++.|+.|++||+.++
T Consensus 558 --~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 558 --AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred --cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 34555 5999999999999999999999999999874
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=311.93 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=172.2
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004293 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
...++.++|++|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+|+ +.+|++++.|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg 81 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKDT 81 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETTS
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCCC
Confidence 345788999999999999999 99999999999999999999999888888 689999999999999 79999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
.|++|++..... ..++..+.+|...|.+++|. +.++++++.||.|++|| ..+
T Consensus 82 ~i~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~---------------- 133 (313)
T 3odt_A 82 MINGVPLFATSG-------EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS---------------- 133 (313)
T ss_dssp CEEEEETTCCTT-------SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE----------------
T ss_pred eEEEEEeeecCC-------CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc----------------
Confidence 999999986432 24467788999999999994 46899999999999999 221
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004293 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
.+.....|...+.+++|.|.++++|++++.|+.|++||.... ...+ .+.
T Consensus 134 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~-------~~~ 182 (313)
T 3odt_A 134 ---------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---------------IKTF-------SGI 182 (313)
T ss_dssp ---------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---------------EEEE-------CSS
T ss_pred ---------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce---------------EEEE-------ecc
Confidence 011112466789999999855789999999999999994321 1111 121
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....|++++|+|++. |++++.|+.|++||+.++
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 222699999999998 999999999999998773
No 32
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-36 Score=346.76 Aligned_cols=227 Identities=11% Similarity=0.134 Sum_probs=186.5
Q ss_pred ccccccchhhhhcc----ccceeeccccCc-eEEEEeCC--CCCEEEEEeCCCcEEEEeCCCC--------eEEEEEccC
Q 004293 27 NHSLQMHSSLVRRL----SQERELEGHQGC-VNAISWNS--KGSLLISGSDDTHINVWSYSSR--------KLLHSIETG 91 (763)
Q Consensus 27 ~~~~~~~~~~~~~~----~~~~~l~gH~~~-V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~--------~~~~~~~~~ 91 (763)
+..+.+|+ ..+. +....|.+|.+. |++++|+| ++++||+|+.|+.|+|||+.++ +.+..+ ..
T Consensus 38 ~~~v~v~~--~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~ 114 (615)
T 1pgu_A 38 GKSAFVRC--LDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV 114 (615)
T ss_dssp TTEEEEEE--CCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC
T ss_pred CCeEEEEE--CCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hc
Confidence 56788888 3455 788999999999 99999999 9999999999999999999755 566666 68
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004293 92 HSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
|...|.+++|+|+ +++|++++.+ +.|++||.. ..+..+.+|...|.+++|+|++..++++++
T Consensus 115 ~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~v~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 180 (615)
T 1pgu_A 115 LAGPISDISWDFE--GRRLCVVGEGRDNFGVFISWDSG------------NSLGEVSGHSQRINACHLKQSRPMRSMTVG 180 (615)
T ss_dssp CSSCEEEEEECTT--SSEEEEEECCSSCSEEEEETTTC------------CEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred ccccEEEEEEeCC--CCEEEEeccCCCCccEEEEEECC------------CcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence 9999999999999 7999999988 689999843 347778899999999999996655899999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc---ceEEEEEeCCCCcEEEEEeCCCcEEEEe
Q 004293 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYD 244 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~p~~~~~l~sgs~Dg~i~iwd 244 (763)
.|+.|++||+.+.+.. .....|.. .|.+++|+|+++++|++++.|+.|++||
T Consensus 181 ~d~~v~vwd~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 181 DDGSVVFYQGPPFKFS-------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp TTTEEEEEETTTBEEE-------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred CCCcEEEEeCCCccee-------------------------eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 9999999998776421 11223555 8999999997468999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~ 313 (763)
+++++.+..+.. + ..+|.. .|++++|+ ++++|++++.|+.|++||+.++..
T Consensus 236 ~~~~~~~~~~~~------------~----~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 236 GKSGEFLKYIED------------D----QEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp TTTCCEEEECCB------------T----TBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCCEeEEecc------------c----ccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 998764433210 0 003444 59999999 999999999999999999998553
No 33
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-37 Score=361.81 Aligned_cols=231 Identities=10% Similarity=0.072 Sum_probs=175.3
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC
Q 004293 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~ 126 (763)
.||.+.|++++|+|++++||+|+.||+|+|||..+.+....+ .|...|.+++|+|. ++|++++.|++|++||+.+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg---~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKG---IYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETT---TEEEEEETTCEEEEEETTT
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCC---CEEEEEECcCeEEEEECCC
Confidence 489999999999999999999999999999999888776654 58889999999993 5999999999999999986
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004293 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
+ +++..+. |.+.|++++|+| ++.+|++|+.||+|++||+++.+.. .+... ...
T Consensus 89 ~----------~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i~--~~~ 141 (902)
T 2oaj_A 89 Q----------KVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-------------SFKLD--NLQ 141 (902)
T ss_dssp C----------SEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-------------EEEEC--CHH
T ss_pred C----------cEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-------------cceec--ccc
Confidence 3 2355564 778999999999 6789999999999999999876421 00000 000
Q ss_pred ec-cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004293 207 SL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (763)
Q Consensus 207 ~~-~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v 285 (763)
.. ....+|...|++++|+|+++.+|++|+.|+.| +||+++++.+..+.....+..... .... ....+|.. .|+++
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~h~~-~V~~v 217 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG-DFSE-KTNEKRTP-KVIQS 217 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS-TTCC-CTTSCBCC-CEEEE
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc-cccc-ccccccCC-CeEEE
Confidence 00 23356788999999999766799999999999 999998765544322110000000 0000 00112333 69999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCc
Q 004293 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (763)
Q Consensus 286 ~~spdg~~l~~~s~d~~i~iwd~~~~~~ 313 (763)
+|+|+|++|++++.|+.|++||+.+++.
T Consensus 218 ~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999999999999999999999998654
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.3e-36 Score=320.14 Aligned_cols=231 Identities=12% Similarity=0.186 Sum_probs=172.4
Q ss_pred eeccccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCC--CcEEEEEe
Q 004293 45 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA 114 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~--~~~l~s~s 114 (763)
.+++|.+.|++++|+|+ ..++++++.++.|+|||+.+++.+..+. ..|...|++++|+|+.. +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44589999999999984 4556666666799999999887665552 12668899999999842 46999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.||.|++||+.++ +.+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++..
T Consensus 93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------- 151 (366)
T 3k26_A 93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV----------- 151 (366)
T ss_dssp TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence 9999999999863 4477788999999999999967789999999999999999876521
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC--CCC------Ccccc
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--SPP------PCVNY 266 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~--~~~------~~~~~ 266 (763)
..+.....|...|.+++|+|+ +++|++++.|+.|++||+++++....+.... .+. .....
T Consensus 152 -----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 152 -----------AIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp -----------EEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred -----------EEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 111222457789999999997 7899999999999999999865433221100 000 00000
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
..+......+|.. .|++++|+ +++|++++.|+.|++||+.+.
T Consensus 220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence 0000011123444 69999999 779999999999999999874
No 35
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-36 Score=374.21 Aligned_cols=256 Identities=19% Similarity=0.217 Sum_probs=205.8
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004293 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++++.|+.|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEEE
Confidence 34578899999999999999999999999999999999999999999 799999999999999 799999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004293 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
||+.++ .++..+.+|...|.+++|+|+ +..++++++.|+.|++||+++++..
T Consensus 684 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~----------------- 736 (1249)
T 3sfz_A 684 WDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----------------- 736 (1249)
T ss_dssp EETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-----------------
T ss_pred EECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-----------------
Confidence 999873 447888899999999999995 3458999999999999999887521
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC-------------CCCccccc
Q 004293 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYF 267 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~ 267 (763)
....+|...|++++|+|+ +.+|++++.||.|++||++++.....+..... ...++. +
T Consensus 737 --------~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~ 806 (1249)
T 3sfz_A 737 --------NTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-W 806 (1249)
T ss_dssp --------EEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-B
T ss_pred --------heecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE-E
Confidence 122357789999999997 78999999999999999987754332211100 000000 0
Q ss_pred ccc-----------------------cccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCC
Q 004293 268 CPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (763)
Q Consensus 268 ~~~-----------------------~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~ 324 (763)
.+. .....+|.. .|++++|+|+++++++++.|+.|++||+.++........+...+
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence 000 000114444 69999999999999999999999999999977666667778888
Q ss_pred eeeeeccCCCCccc
Q 004293 325 KIMSFTPTLNGLEL 338 (763)
Q Consensus 325 ~~~~~~p~~~~~~~ 338 (763)
..++|+|+...+..
T Consensus 886 ~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEEECTTSSEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 99999998765543
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=321.50 Aligned_cols=214 Identities=13% Similarity=0.152 Sum_probs=167.4
Q ss_pred ceeeccccCceEEEEeCCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC-CCcEEEEEeCCC
Q 004293 43 ERELEGHQGCVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA 117 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~-Lasgs~---D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg 117 (763)
.+.+++|.+.|++++|+|++.. +++|+. |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 4556889999999999999964 456665 99999999999887655545899999999999982 148999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE------ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 191 (763)
.|++||+.... .++..+.+|...|.++.| +| ++.+|++++.||.|++||+++++...
T Consensus 91 ~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~------- 153 (357)
T 3i2n_A 91 NLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPV------- 153 (357)
T ss_dssp CEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCS-------
T ss_pred eEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcc-------
Confidence 99999998742 247788899999999966 55 66899999999999999999875221
Q ss_pred ccceEEEecCCCceeeccCCCC-CccceEEEE----EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 192 ECRNILLDLRCGAKRSLADPPK-QTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~----~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
.. +....+ ....+.+++ |+|+ +.+|++++.|+.|++||+++++....
T Consensus 154 ----~~----------~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~------------- 205 (357)
T 3i2n_A 154 ----AN----------MEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWE------------- 205 (357)
T ss_dssp ----EE----------ECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEE-------------
T ss_pred ----ee----------ccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeee-------------
Confidence 11 111111 134678888 6776 78999999999999999997643211
Q ss_pred cccccccCCCCCccceeEEEEcC---CCCEEEEEeCCCeEEEEECCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~sp---dg~~l~~~s~d~~i~iwd~~~ 310 (763)
.++.. .|++++|+| ++.+|++++.|+.|++||+.+
T Consensus 206 --------~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 206 --------TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp --------EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred --------cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 11333 599999999 999999999999999999877
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.9e-36 Score=320.08 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=174.9
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004293 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
++.|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+ .+|...|.+++|+|+ +++|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEEE
Confidence 45699999999999999999999999999999999987 77777 789999999999998 79999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
+..... .....+..|...|.+++|+| ++.+|++++.|+.|++||++..+.. ...
T Consensus 81 ~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~~------ 134 (372)
T 1k8k_C 81 LKGRTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WVC------ 134 (372)
T ss_dssp EETTEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EEE------
T ss_pred CCCCee--------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-----------eee------
Confidence 976321 12334467899999999999 6689999999999999999876521 000
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC-----CCCCCcccccccccccCCCCC
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-----MSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~ 278 (763)
......|...|.+++|+|+ +++|++++.|+.|++||++........... .....++..+ .+|.
T Consensus 135 ----~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (372)
T 1k8k_C 135 ----KHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSSC 202 (372)
T ss_dssp ----EEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCCS
T ss_pred ----eeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCCC
Confidence 1111345678999999997 689999999999999998643211100000 0001111111 2344
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 203 ~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 203 G-WVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp S-CEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred C-eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 4 6999999999999999999999999998763
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=331.20 Aligned_cols=222 Identities=16% Similarity=0.288 Sum_probs=172.0
Q ss_pred ccCceEEEEeCCCCC-EEEEE----------eCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 49 HQGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 49 H~~~V~~l~fsp~g~-~Lasg----------s~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
+...|.+++|+|+|+ +||+| +.|+.|+|||+.++. .+.. ..|...|.+++|+|+ +.+|++++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSHN--NKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECSS--SSCEEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECCC--CCeEEEEc
Confidence 345789999999987 99999 899999999999875 3333 368899999999999 79999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.|+.|++||+...... ...+..+.+|...|.+++|+|+++.+|++++.||.|++||+++.+......
T Consensus 87 ~dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------- 153 (416)
T 2pm9_A 87 DNGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------- 153 (416)
T ss_dssp SSSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------
T ss_pred cCCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------
Confidence 9999999999862211 134677889999999999999657899999999999999999875211000
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
....+.....|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+... ...
T Consensus 154 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------~~~ 210 (416)
T 2pm9_A 154 ---------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT--------------SPN 210 (416)
T ss_dssp ---------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC--------------CCS
T ss_pred ---------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc--------------ccc
Confidence 000111224567889999999986789999999999999999987544332110 000
Q ss_pred CCCCccceeEEEEcCCC-CEEEEEeCCC---eEEEEECCCC
Q 004293 275 HGRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHA 311 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg-~~l~~~s~d~---~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|++ .+|++++.|+ .|++||++++
T Consensus 211 ~~~~~-~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 211 SGIKQ-QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp SCCCC-CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred cccCC-ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 12233 69999999997 6899999998 9999999873
No 39
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=312.60 Aligned_cols=229 Identities=20% Similarity=0.320 Sum_probs=197.9
Q ss_pred CCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004293 22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~ 101 (763)
.+.+.++.+++|+....+......+++|...|.+++|++++.+|++|+.|++|+|||+.+++.+..+ ..|...+.+++|
T Consensus 52 ~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~ 130 (321)
T 3ow8_A 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAF 130 (321)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEE
T ss_pred EEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEE
Confidence 3456789999999666666677789999999999999999999999999999999999999999988 688889999999
Q ss_pred eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004293 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
+|+ +++|++++.|+.|++||+..+ .....+..|...|.+++|+| ++.+|++++.||.|++||+++++
T Consensus 131 spd--g~~l~~g~~dg~v~i~~~~~~----------~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 131 SPD--SQYLATGTHVGKVNIFGVESG----------KKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp CTT--SSEEEEECTTSEEEEEETTTC----------SEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred CCC--CCEEEEEcCCCcEEEEEcCCC----------ceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCc
Confidence 999 799999999999999999863 33567778999999999999 67899999999999999998765
Q ss_pred CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004293 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
. +....+|...|.+++|+|+ +.+|++|+.|+.|++||++++.....+
T Consensus 198 ~-------------------------~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~------- 244 (321)
T 3ow8_A 198 L-------------------------LHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTL------- 244 (321)
T ss_dssp E-------------------------EEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEE-------
T ss_pred E-------------------------EEEEcccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEE-------
Confidence 2 1122356778999999997 689999999999999999876533222
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 245 -------------~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 245 -------------SGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp -------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 34555 5999999999999999999999999998773
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=312.43 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=171.0
Q ss_pred ccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004293 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 47 ~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
..|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+ ..+|...|++++|+|+ +++|++|+.|++|++||
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEE
Confidence 3467889999999985 6889999999999999988644332 2589999999999999 79999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
+.++ +++..+.+|.+.|++++|+|++..+|++++.|++|++||+++++...
T Consensus 156 ~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~------------------- 206 (344)
T 4gqb_B 156 LAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS------------------- 206 (344)
T ss_dssp TTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-------------------
T ss_pred CCCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee-------------------
Confidence 9873 45788999999999999999777899999999999999999876320
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
......+...+.+++|+|+++++|++|+.|+.|++||+++++.+..+ .+|.. .|+
T Consensus 207 ----~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v~ 261 (344)
T 4gqb_B 207 ----QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CVT 261 (344)
T ss_dssp ----ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CEE
T ss_pred ----eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CEE
Confidence 11112344568999999987889999999999999999987655433 34555 599
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 004293 284 HVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 284 ~v~~spdg-~~l~~~s~d~~i~iwd~~~ 310 (763)
+|+|+|++ ++|++++.|++|+|||+.+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 99999998 5789999999999999876
No 41
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-36 Score=353.49 Aligned_cols=299 Identities=10% Similarity=0.031 Sum_probs=195.2
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE-E---------EccCC
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-S---------IETGH 92 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~-~---------~~~~h 92 (763)
+...++.|++|+ +.+.+++..+. |.+.|++++|+|++++|++|+.||+|++||+.+++... . ...+|
T Consensus 74 S~s~D~~v~lWd--~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 74 VINAKDTVYVLS--LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp EEETTCEEEEEE--TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred EEECcCeEEEEE--CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 345688999998 45556777776 77899999999999999999999999999999887641 1 12579
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee------------------cccCceeEEE
Q 004293 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------------------CHTRRVKKLA 154 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------------------~h~~~v~~l~ 154 (763)
.+.|.+++|+|+. +..|++|+.|+.| +||++... ++..+. .|...|++++
T Consensus 151 ~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~----------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 151 LSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENE----------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp CCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTE----------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred CCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCc----------eEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 9999999999963 5789999999999 99998632 233333 3467899999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCCCC--C--CCCC-------------c-ccceEEEecC-------------CC
Q 004293 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--A--GSSH-------------Q-ECRNILLDLR-------------CG 203 (763)
Q Consensus 155 ~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~--~~~~-------------~-~~~~~~~~~~-------------~~ 203 (763)
|+| ++.+|++++.||+|++||+++++.+.. . ...+ . ....+.|... ..
T Consensus 219 fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 219 YHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp ECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred EcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 999 578999999999999999998764321 0 0000 1 0111111100 00
Q ss_pred ------ceeecc--------------------------C-CCCCccceEEEEEeC---------CCCcEEEEEeCCCcEE
Q 004293 204 ------AKRSLA--------------------------D-PPKQTLSLKSCDISS---------TRPHLLLVGGSDAFAR 241 (763)
Q Consensus 204 ------~~~~~~--------------------------~-~~~~~~~v~~i~~~p---------~~~~~l~sgs~Dg~i~ 241 (763)
....+. . ...+...|.++.+.+ .++..+++++.|+.|+
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~ 377 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIE 377 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEE
Confidence 000000 0 001234566666654 1244788888899999
Q ss_pred EEeCCCCCCCccc-------CCCCCCCCccccc--------------ccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 004293 242 LYDRRMLPPLTSC-------QKRMSPPPCVNYF--------------CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (763)
Q Consensus 242 iwd~~~~~~~~~~-------~~~~~~~~~~~~~--------------~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d 300 (763)
+||+.++...... .....+..++... ........||.. .+.+|+|+|++++|++|+.|
T Consensus 378 ~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~-~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 378 TMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVR-TKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBC-CCCCCCCCSEEEEEEEEETT
T ss_pred EEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcC-CCCcccccccCcEEEEecCC
Confidence 9998766422110 0000000000000 000011234544 47788899999999999999
Q ss_pred CeEEEEECCCCCccc-eEe----------ecCCCCeeeeeccCCCCccc
Q 004293 301 EHVYLMDVNHAGGRA-MRY----------TVGDASKIMSFTPTLNGLEL 338 (763)
Q Consensus 301 ~~i~iwd~~~~~~~~-~~~----------~~~~~~~~~~~~p~~~~~~~ 338 (763)
++|++||+.++.... ..+ .+...+..++|+|+...++.
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs 505 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV 505 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE
Confidence 999999999864211 111 45567888999998665543
No 42
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=335.46 Aligned_cols=243 Identities=10% Similarity=0.062 Sum_probs=178.7
Q ss_pred cceeeccccCceEEEEeCCCC---------CEEEE-------------------EeCCCcEEEEeCCCCeEE----EEEc
Q 004293 42 QERELEGHQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIE 89 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g---------~~Las-------------------gs~D~~v~iWd~~~~~~~----~~~~ 89 (763)
...++. +.+.|.+|+|+|++ ++||+ ++.|++|+|||+.+++.. ..+
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l- 203 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI- 203 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-
Confidence 333444 67899999999976 56666 457889999999877532 334
Q ss_pred cCCCCceEEEEEeeC----CCCcEEEEEeCCCcEEEEECCCCCCCCC-CCCCCCCceeeecccCceeEEEEecCCCCEEE
Q 004293 90 TGHSANVFCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~----~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 164 (763)
.+|.+.|.+++|+|+ .++.+|++++.||+|++||+..+..... ......+...+.+|...|++++|+| + ..|+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la 281 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV 281 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence 567889999999996 2257999999999999999986432100 0001134557888999999999998 3 4899
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE--EEeCCCC-cEEEEEeCCCcEE
Q 004293 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRP-HLLLVGGSDAFAR 241 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~p~~~-~~l~sgs~Dg~i~ 241 (763)
+|+.||+|++||++++..+ .....+|...|+++ +|+|+ + ++||+|+.|++|+
T Consensus 282 sgs~DgtV~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~~-g~~~laS~S~D~tvk 336 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSDF-EDTVVSTVAVDGYFY 336 (524)
T ss_dssp EEETTSEEEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCTT-SCCEEEEEETTSEEE
T ss_pred EEeCCCEEEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCCC-CCeEEEEeccCCeEE
Confidence 9999999999999875421 11123577889999 56775 5 8999999999999
Q ss_pred EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc-cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec
Q 004293 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (763)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~ 320 (763)
|||+++++....+ .+|.. ..|.+|+|+|+++.|++++.|++|++||++++.......++
T Consensus 337 lWD~~~~~~~~~~--------------------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH 396 (524)
T 2j04_B 337 IFNPKDIATTKTT--------------------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR 396 (524)
T ss_dssp EECGGGHHHHCEE--------------------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred EEECCCCCccccc--------------------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence 9999875432211 11211 13889999999999999999999999999997766666778
Q ss_pred CCCCeeeeeccCC
Q 004293 321 GDASKIMSFTPTL 333 (763)
Q Consensus 321 ~~~~~~~~~~p~~ 333 (763)
...+..++|+|+.
T Consensus 397 ~~~V~sva~Sp~g 409 (524)
T 2j04_B 397 ETTITAIGVSRLH 409 (524)
T ss_dssp SSCEEEEECCSSC
T ss_pred CCceEEEEeCCCC
Confidence 8888899999864
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.1e-35 Score=309.60 Aligned_cols=227 Identities=11% Similarity=0.093 Sum_probs=178.6
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004293 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
|.+.|.+++|+|||++|+++..++.+.+|+.......... .+|...|.+++|+|+ +++|++++ |+.|++||+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999888888888876665544444 479999999999999 79999998 9999999998643
Q ss_pred CCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004293 129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
.. ..+..+. .|...|.+++|+| ++.+|++++.||.|++||+++++..
T Consensus 84 ~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~----------------------- 132 (337)
T 1gxr_A 84 NK-------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR----------------------- 132 (337)
T ss_dssp CC-------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--E-----------------------
T ss_pred ce-------eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcc-----------------------
Confidence 21 2233333 7899999999999 6689999999999999999876421
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004293 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
.......+...|.+++|+|+ +++|++++.|+.|++||+++++.+..+ .+|.. .|++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~--------------------~~~~~-~i~~~~ 190 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCID 190 (337)
T ss_dssp EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEE
T ss_pred eeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeee--------------------ecccC-ceEEEE
Confidence 11112245678999999997 789999999999999999976543222 22444 599999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004293 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 287 ~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
|+|++++|++++.|+.|++||+.++. ..........+..++|+|+.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTG 236 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECSSCEEEEEECTTS
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCc-eEeeecCCCceEEEEECCCC
Confidence 99999999999999999999999854 33444556667778888753
No 44
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=314.53 Aligned_cols=242 Identities=12% Similarity=0.189 Sum_probs=184.7
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc------------cCC
Q 004293 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGH 92 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~------------~~h 92 (763)
.+..+++|+ ....+....+++|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+. .+|
T Consensus 21 ~~~~~~v~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLG--LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHT--EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeec--cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 455667766 455567788899999999999999 99999999999999999999875443331 259
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC--CEEEEEeCCC
Q 004293 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDG 170 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~l~s~s~dg 170 (763)
...|.+++|+|+. +.+|++++.|+.|++||+... .....+. +...+.++.|+|.+. .++++++.||
T Consensus 99 ~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 99 RYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTNTL----------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp SSCEEEEEECTTC-TTCEEEEETTSEEEEEETTTT----------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCCCC----------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 9999999999953 789999999999999999863 2244444 788899999998533 4899999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004293 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
.|++||+++++.. .....|...|.+++|+|++..+|++|+.|+.|++||+++...
T Consensus 167 ~v~~~d~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~ 221 (408)
T 4a11_B 167 KVQLCDLKSGSCS-------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221 (408)
T ss_dssp SEEEEESSSSCCC-------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC
T ss_pred eEEEEeCCCccee-------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc
Confidence 9999999877532 112246778999999998555799999999999999998752
Q ss_pred -CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 251 -LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+..+...... . .........+|.. .|++++|+|++++|++++.|+.|++||+.++.
T Consensus 222 ~~~~~~~~~~~-~----~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 222 CLITLDQHNGK-K----SQAVESANTAHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp CSEECCTTTTC-S----CCCTTTSSCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ccccccccccc-c----ceeeccccccccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 2221110000 0 0000011123444 69999999999999999999999999999854
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=299.29 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=157.5
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
.+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|+ +++|++|+.|++|++||++++
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~--- 99 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ--- 99 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT---
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc---
Confidence 36789999886 777764 8999999999999887762 468889999999999 799999999999999999973
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004293 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
+++..+.+|...+.++.+.+ .++++++.++.+++|+....... +..
T Consensus 100 -------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~------------------------~~~ 145 (318)
T 4ggc_A 100 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT 145 (318)
T ss_dssp -------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred -------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCcee------------------------EEE
Confidence 44788889999888877653 68999999999999998776421 112
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004293 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd 290 (763)
..+|...+..+.+.++ +++|++++.|+.|++||+++++....... ....+.. .|..++++|+
T Consensus 146 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------~~~~~~~-~v~~~~~~~~ 207 (318)
T 4ggc_A 146 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQ----------------TFTQHQG-AVKAVAWCPW 207 (318)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCSE----------------EECCCCS-CEEEEEECTT
T ss_pred EcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCccccccee----------------eecccCC-ceEEEEecCC
Confidence 2356778999999997 68999999999999999998754321100 0012333 5999999998
Q ss_pred CCEEE---EEeCCCeEEEEECCCC
Q 004293 291 GEEVL---LSYSGEHVYLMDVNHA 311 (763)
Q Consensus 291 g~~l~---~~s~d~~i~iwd~~~~ 311 (763)
+..++ +++.++.|++||....
T Consensus 208 ~~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 208 QSNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp STTEEEEEECTTTCEEEEEETTTC
T ss_pred CCcEEEEEecCCCCEEEEEecccc
Confidence 76443 4456899999998763
No 46
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-34 Score=314.21 Aligned_cols=201 Identities=18% Similarity=0.296 Sum_probs=159.2
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
.++.|+||++ ++||+|. |++|+|||..+++.+..+. .+|...|++|+|+|+ +++|++|+.||.|+|||+.++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~--- 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ--- 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence 4678999975 5788775 8999999999998877662 467889999999999 799999999999999999873
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004293 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
+++..+.+|...+.++++++ .++++|+.|+.+++||.+..... +..
T Consensus 180 -------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~ 225 (420)
T 4gga_A 180 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT 225 (420)
T ss_dssp -------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred -------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence 44788899999999998864 79999999999999998875421 112
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC
Q 004293 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd 290 (763)
..+|...+..+.|+|+ +.++++++.|+.|++||..+++..... +..+ ..|.. .|.+++|+|+
T Consensus 226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~---------~~~~-------~~~~~-~V~~~~~~p~ 287 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVP---------LQTF-------TQHQG-AVKAVAWCPW 287 (420)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCC---------SEEE-------CCCSS-CEEEEEECTT
T ss_pred ecccccceeeeeecCC-CCeeeeeeccccceEEeecccccccee---------eeee-------cccCC-ceeeeeeCCC
Confidence 2356778999999997 789999999999999999876532111 1110 22444 6999999997
Q ss_pred CCE-EEEE--eCCCeEEEEECCCC
Q 004293 291 GEE-VLLS--YSGEHVYLMDVNHA 311 (763)
Q Consensus 291 g~~-l~~~--s~d~~i~iwd~~~~ 311 (763)
+.. ++++ +.|++|++||+.++
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTT
T ss_pred cccEEEEEeecCCCEEEEEeCCcc
Confidence 654 4443 35999999999874
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-36 Score=320.97 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=168.4
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004293 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
.++.|.++|++++|+|+|++||+|+.|+.|+|||+.++ +.+..+ .+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEEEC
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEEEE
Confidence 34557789999999999999999999999999999988 666666 799999999999999 7999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004293 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
|+..+.. ..+...+.+|...|.+++|+| ++.+|++++.|+.|++||++..+...
T Consensus 83 d~~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~------------------ 136 (377)
T 3dwl_C 83 EKRPDGT-------WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWW------------------ 136 (377)
T ss_dssp ------C-------CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CC------------------
T ss_pred EcCCCCc-------eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccce------------------
Confidence 9987430 134667778999999999999 66899999999999999998875210
Q ss_pred CceeeccCCCC-CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004293 203 GAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 203 ~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
.+..... |...|.+++|+|+ +++|++++.|+.|++||++............. ............ .+|.. .
T Consensus 137 ----~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~-~ 207 (377)
T 3dwl_C 137 ----VSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVW-GSRLPFNTVCAE--YPSGG-W 207 (377)
T ss_dssp ----CCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSS-CSCCCEEEEEEC--CCCSS-S
T ss_pred ----eeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCcccccc-ccccchhhhhhc--ccCCc-e
Confidence 0011112 6788999999997 78999999999999999975442211100000 000000000000 14554 5
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|++++|+|++++|++++.|+.|++||+.++
T Consensus 208 v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 208 VHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999999999999884
No 48
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-35 Score=316.47 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=152.3
Q ss_pred cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeE
Q 004293 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK 152 (763)
Q Consensus 73 ~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 152 (763)
.+..|+..+..+..++ .+|.+.|++++|+|+ +.+|++|+.|++|+|||+.++ .....+..|...|.+
T Consensus 47 ~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~----------~~~~~~~~h~~~v~~ 113 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTS----------QKTHAIKLHCPWVME 113 (380)
T ss_dssp GCCCCCCCCCEEEEEE-CCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTT----------EEEEEEECCCTTCCC
T ss_pred cccccccceeEEeecc-cccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------ccceEEecCCCCEEE
Confidence 4456777777888888 899999999999999 799999999999999999863 346788899999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE
Q 004293 153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (763)
Q Consensus 153 l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~ 232 (763)
++|+| ++.+|++|+.|+.|++||+....... +.........+|...|.++.|.|+++..|+
T Consensus 114 ~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 114 CAFAP-NGQSVACGGLDSACSIFNLSSQADRD------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp CEECT-TSSEEEECCSSSCCEEEECCCCSSCC------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred EEECC-CCCEEEEeeCCCcEEEEECCCCcccc------------------CCccceeeccCCCcceEEEEEecCCCCEEE
Confidence 99999 67899999999999999997653210 001112234567888999999998777899
Q ss_pred EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 004293 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 233 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~ 310 (763)
+|+.|++|++||+++++.+..+... ...+|.. .|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 175 s~s~D~~i~~wd~~~~~~~~~~~~~---------------~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRISIFGSE---------------FPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp EECTTSCEEEECTTTCCEEEEECCC---------------SSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred EECCCCcEEEEEcCCCcEEEEeecc---------------cCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 9999999999999987654332110 1133544 599999987 889999999999999999875
No 49
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-34 Score=298.47 Aligned_cols=186 Identities=15% Similarity=0.196 Sum_probs=142.6
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004293 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~--~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+..+ .+|..+|++++|+|..++.+|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 456889999999999999999999999999999999974 3567777 7999999999998642268999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+||+..+.. ..+..+.+|...|.+++|+|+. +.+|++++.|++|++||++..... ...
T Consensus 81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----------~~~--- 139 (297)
T 2pm7_B 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT----------SPI--- 139 (297)
T ss_dssp EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------CCE---
T ss_pred EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------eee---
Confidence 999986421 2356678899999999999952 689999999999999999875311 000
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
...+|...|.+++|+|+.... ++ . +
T Consensus 140 ----------~~~~h~~~v~~~~~~p~~~~~------~~--------~-----------------------------~-- 164 (297)
T 2pm7_B 140 ----------IIDAHAIGVNSASWAPATIEE------DG--------E-----------------------------H-- 164 (297)
T ss_dssp ----------EEECCSSCEEEEEECCCC----------------------------------------------------
T ss_pred ----------eeecccCccceEeecCCcccc------cc--------c-----------------------------C--
Confidence 112456678888888852100 00 0 0
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
...+++++|++++.|+.|++||++++
T Consensus 165 ------~~~~~~~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 165 ------NGTKESRKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETT
T ss_pred ------CCCCCcceEEEEcCCCcEEEEEEcCC
Confidence 01235788999999999999998763
No 50
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-34 Score=305.11 Aligned_cols=171 Identities=13% Similarity=0.201 Sum_probs=140.8
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004293 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 162 (763)
+...++ .+|...|++++|+|+ +.+|++|+.||+|++||+.++ ..+..+..|...|.+++|+| ++.+
T Consensus 46 ~~~~~l-~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~~~~s~-~~~~ 111 (340)
T 1got_B 46 RTRRTL-RGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAP-SGNY 111 (340)
T ss_dssp CEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTC----------CEEEEEECSSSCEEEEEECT-TSSE
T ss_pred hhheee-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCC----------CcceEeecCCccEEEEEECC-CCCE
Confidence 445667 799999999999999 799999999999999999863 34677888999999999999 6689
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004293 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
|++++.|+.|++||+.+.... ........+|...|.++.|+++ ..+++++.|+.|++
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~ 168 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCAL 168 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEE
T ss_pred EEEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEE
Confidence 999999999999999875421 0111122357788999999986 36999999999999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
||+++++.+..+ .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 169 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~ 216 (340)
T 1got_B 169 WDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREG 216 (340)
T ss_dssp EETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCcEEEEE--------------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999987543322 34555 5999999999999999999999999998773
No 51
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.5e-35 Score=311.48 Aligned_cols=207 Identities=9% Similarity=0.088 Sum_probs=139.5
Q ss_pred cCceEEEEeCCCCCEEEEEeCCC-------cEEEEeCCCCeE--------E--EEEccCCCCceEEEEEeeCCCCcEEEE
Q 004293 50 QGCVNAISWNSKGSLLISGSDDT-------HINVWSYSSRKL--------L--HSIETGHSANVFCTKFVPETSDELVVS 112 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~-------~v~iWd~~~~~~--------~--~~~~~~h~~~V~~v~~~p~~~~~~l~s 112 (763)
..+|++++|+|||++||+|+.|. .|+||++..+.. . ..+ .+|...|.++++.+ ..+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~~----~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDASK----GIILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEET----TEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeCC----CEEEE
Confidence 45899999999999999998644 599999875421 1 223 67888898887764 45665
Q ss_pred E-----------eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEE--EEeCCCcEEEEECCC
Q 004293 113 G-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASEDGTLRQHDFRQ 179 (763)
Q Consensus 113 ~-----------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~--s~s~dg~i~iwd~~~ 179 (763)
| +.|+.+++|++........... .........+...+.+++|+| ++++++ +++.|++|++||+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-SVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-EECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEee-eeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence 5 4578899999876432110000 000111223456789999999 556654 445789999999988
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004293 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
.+.. .. + .|...|.+++|+|+ +++|++++.+ .+++|+..++..+...
T Consensus 167 ~~~~--------------~~--------~----~~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~~~~~~----- 213 (365)
T 4h5i_A 167 LTEK--------------FE--------I----ETRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGSCIARK----- 213 (365)
T ss_dssp TEEE--------------EE--------E----ECSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCCEEEEE-----
T ss_pred CcEE--------------EE--------e----CCCCceEEEEEccC-CceEEeccce-eEEEEEeccCcceeee-----
Confidence 7521 10 0 14457999999997 7899988855 5666666655422110
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC----eEEEEECCC
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH 310 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~----~i~iwd~~~ 310 (763)
...+|.. .|++++|+|+++++++++.|+ .+++|++..
T Consensus 214 -------------~~~~~~~-~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 214 -------------TDFDKNW-SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp -------------CCCCTTE-EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred -------------ecCCCCC-CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 0123443 599999999999999999876 677787665
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-34 Score=311.63 Aligned_cols=246 Identities=13% Similarity=0.121 Sum_probs=185.3
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
...+..+++|+ ..+.+....+.+| ..+....|+|++++||+|+.|+.|+|||+.+++....+ .+|...|.+++|+|
T Consensus 74 ~~~d~~v~i~d--~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~ 149 (420)
T 3vl1_A 74 ARLDGHDFLFN--TIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFP 149 (420)
T ss_dssp EEETTEEEEEE--CCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECT
T ss_pred EEcCCcEEEEE--ecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECC
Confidence 34467888888 4444556666666 45556678999999999999999999999998887776 79999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+ +.+|++|+.|+.|++||+.++ ..+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++..
T Consensus 150 ~--~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 150 S--GEALISSSQDMQLKIWSVKDG----------SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp T--SSEEEEEETTSEEEEEETTTC----------CCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEE
T ss_pred C--CCEEEEEeCCCeEEEEeCCCC----------cCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCcee
Confidence 9 799999999999999999863 34678889999999999999 6689999999999999999987643
Q ss_pred CCCCCC--Cccc-ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC
Q 004293 184 PPAGSS--HQEC-RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (763)
Q Consensus 184 ~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (763)
...... +... ....+..... . .....+...+.+++|+|+ +++|++|+.||.|++||+++++.+..+.
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~--~--~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~----- 286 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTD--R--QLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLP----- 286 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCC--S--SCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred EEeecCCCCCCCccEEEEecCCc--c--eeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcc-----
Confidence 111100 0000 0000000000 0 000112355677788896 7899999999999999999875432221
Q ss_pred CCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004293 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|+++ +|++++.|+.|++||+.++
T Consensus 287 --------------~~~~~-~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 287 --------------SKFTC-SCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp --------------CTTSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred --------------cccCC-CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 12333 599999999999 9999999999999999874
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.2e-34 Score=314.48 Aligned_cols=228 Identities=19% Similarity=0.347 Sum_probs=175.4
Q ss_pred cceeeccccCce-EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004293 42 QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 42 ~~~~l~gH~~~V-~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
....|++|.+.| .++.| ++++|++|+.||+|++||+.+++.+..+ .+|...|.+++|+|+ + +|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--G-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence 456899999885 66666 5789999999999999999999999999 799999999999988 4 999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+||+.++ .++..+.+|...|.+++|++ .++.++++++.||.|++||+++............ . .....
T Consensus 187 vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~ 254 (464)
T 3v7d_B 187 VWDIKKG----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-Y-PLVFH 254 (464)
T ss_dssp EEETTTT----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-S-SEEES
T ss_pred EEECCCC----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-c-ceEee
Confidence 9999863 34778889999999999996 2568999999999999999998764422111110 0 01111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
........+....+|...+.++. ++ +++|++|+.|+.|++||+++++.+..+ .+|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~~ 311 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD 311 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred ccCCCeEEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCCC
Confidence 11111111223445677777774 43 579999999999999999976543322 33544
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|++++|+|++++|++++.|+.|++||+.++
T Consensus 312 -~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 312 -RIYSTIYDHERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp -CEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred -CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 5999999999999999999999999998773
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.2e-35 Score=333.45 Aligned_cols=281 Identities=12% Similarity=0.053 Sum_probs=185.2
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCC---ceEEEEEee
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVP 103 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~---~V~~v~~~p 103 (763)
..+.+|+ ..+.+..+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+ .+|.. .|.+++|+|
T Consensus 142 ~~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 142 GVFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp EEEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECS
T ss_pred cEEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECC
Confidence 4666776 3467788999999999999999998 8999999999999999999999998 78998 999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee-e---cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-Q---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+. +++|++++.|+.|++||+.++ +.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+++
T Consensus 217 ~~-~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 217 DS-GEFVITVGSDRKISCFDGKSG----------EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp TT-CCEEEEEETTCCEEEEETTTC----------CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTT
T ss_pred CC-CCEEEEEeCCCeEEEEECCCC----------CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCC
Confidence 83 589999999999999999863 335666 5 899999999999 568999999999999999998
Q ss_pred CCCCCCCCCC----------------------CcccceEEEecCCCceeeccCCCCC-----------------------
Q 004293 180 GSSCPPAGSS----------------------HQECRNILLDLRCGAKRSLADPPKQ----------------------- 214 (763)
Q Consensus 180 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 214 (763)
++........ .......+|++..+. .+.....|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~ 361 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE--VLKTISGHNKGITALTVNPLISGSYDGRIME 361 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE--EEEEECCCSSCEEEEETTTTEEEETTSCEEE
T ss_pred CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc--EEEEEeCCCCCEEEEEecCcEEECCCCeEEE
Confidence 7643211110 011222334433211 12222334
Q ss_pred ----------ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC-CCCC---------CCcccccc--cc-c
Q 004293 215 ----------TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK-RMSP---------PPCVNYFC--PM-H 271 (763)
Q Consensus 215 ----------~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~-~~~~---------~~~~~~~~--~~-~ 271 (763)
...|.+++|.+ +..|++++.|+.|++||+.+++....... ...+ ...+..+. .. .
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 439 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 439 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCS--TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEchhhcCcccCceEEEEECC--CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence 44455555522 34566666666666666554321100000 0000 00000000 00 0
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCCcc-ceEeecCCCCeeeeeccCC
Q 004293 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 272 ~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~p~~ 333 (763)
+....+. ..+++++|+ +++|++++. |+.|++||+.++... .....+...+..++|+|+.
T Consensus 440 ~~~~~~~-~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 440 IKSVRLN-SPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EEEEECS-SCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred eeecccC-CCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence 0000122 258899998 889999999 999999999885422 2333445666777777753
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.9e-34 Score=315.32 Aligned_cols=205 Identities=22% Similarity=0.374 Sum_probs=169.9
Q ss_pred ccccceeeccccCce-EEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004293 39 RLSQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V-~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
+.+....|++|.+.| .++ +++|++|++|+.||+|++||+.+++.+..+ .+|...|.+++|+ +.+|++|+.||
T Consensus 107 ~~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~~~dg 179 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR----DNIIISGSTDR 179 (445)
T ss_dssp CCCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE----TTEEEEEETTS
T ss_pred CcceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec----CCEEEEEeCCC
Confidence 345678899999875 554 456899999999999999999999999988 7999999999998 35999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
+|++||+.++ +++..+.+|...|.+++|++ ..+++++.||.|++||+++++..
T Consensus 180 ~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~-------------- 232 (445)
T 2ovr_B 180 TLKVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL-------------- 232 (445)
T ss_dssp CEEEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE--------------
T ss_pred eEEEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE--------------
Confidence 9999999863 44778889999999999964 57999999999999999876521
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004293 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
....+|...|.+++|+ +++|++|+.|+.|++||+++++.+..+ .+|
T Consensus 233 -----------~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~ 278 (445)
T 2ovr_B 233 -----------HVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH 278 (445)
T ss_dssp -----------EEEECCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred -----------EEEcCCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCC
Confidence 1112467789999993 578999999999999999876543322 234
Q ss_pred CccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004293 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~ 314 (763)
.. .|++++| ++.+|++++.|+.|++||+.++...
T Consensus 279 ~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 279 TN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp SS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 44 5999999 8899999999999999999986543
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-34 Score=339.30 Aligned_cols=213 Identities=14% Similarity=0.245 Sum_probs=182.6
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004293 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
++..+.|++|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|..+|.+++|+|+ +.+|++++.||.|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i 79 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFRI 79 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCeE
Confidence 5677889999999999999999999999999999999999999999998 789999999999999 7999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++||+.++ ..+..+.+|.+.|.+++|+| ++.+|++++.||.|++||+.++...
T Consensus 80 ~vw~~~~~----------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~---------------- 132 (814)
T 3mkq_A 80 RVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL---------------- 132 (814)
T ss_dssp EEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEE----------------
T ss_pred EEEECCCC----------cEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceE----------------
Confidence 99999863 34677889999999999999 6688999999999999999875311
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
......|...|.+++|+|.++++|++++.|+.|++||++++.....+ ..+..
T Consensus 133 --------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------------~~~~~ 184 (814)
T 3mkq_A 133 --------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------TTGQE 184 (814)
T ss_dssp --------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--------------------ECCCT
T ss_pred --------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--------------------ecCCC
Confidence 11122466789999999944789999999999999999876543222 11222
Q ss_pred cceeEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 004293 280 LHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 280 ~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~ 310 (763)
..++.++|+| ++.+|++++.|+.|++||+.+
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 2599999999 999999999999999999876
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-34 Score=308.85 Aligned_cols=203 Identities=19% Similarity=0.282 Sum_probs=163.0
Q ss_pred eccccCc--eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004293 46 LEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 46 l~gH~~~--V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
..+|... +.+++|++ ..+++++.|+.|++||+.+++....+...|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEE
Confidence 3477655 45566664 558888899999999999999888875568999999999998 79999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
+.++ ..+..+.+|...|.+++|++ .+|++++.||.|++||++.....
T Consensus 163 ~~~~----------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~-------------------- 209 (401)
T 4aez_A 163 VESQ----------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ-------------------- 209 (401)
T ss_dssp TTTC----------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE--------------------
T ss_pred CcCC----------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcce--------------------
Confidence 9863 34777889999999999954 69999999999999999854311
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
+.....|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+ .+|.. .|+
T Consensus 210 ----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~--------------------~~~~~-~v~ 263 (401)
T 4aez_A 210 ----IGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTK--------------------TNHNA-AVK 263 (401)
T ss_dssp ----EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEE--------------------CCCSS-CCC
T ss_pred ----eeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEe--------------------cCCcc-eEE
Confidence 1112346788999999996 789999999999999999986543222 22444 599
Q ss_pred EEEEcCCCCEEEE-Ee--CCCeEEEEECCCC
Q 004293 284 HVTFSPNGEEVLL-SY--SGEHVYLMDVNHA 311 (763)
Q Consensus 284 ~v~~spdg~~l~~-~s--~d~~i~iwd~~~~ 311 (763)
+++|+|++..+++ ++ .|+.|++||+.++
T Consensus 264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp EEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred EEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 9999998765555 43 5999999999874
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=310.96 Aligned_cols=233 Identities=15% Similarity=0.279 Sum_probs=167.0
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEEccCCC------------CceEEEEEeeC
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE 104 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-----------~~~~~~~~h~------------~~V~~v~~~p~ 104 (763)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+ .+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 368899999999999999999999999999999876 46667 7898 88999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCCC-----------------CCCCCC------------CCcee-eecccCceeEEE
Q 004293 105 TSDELVVSGAGDAEVRLFNLSRFSGRG-----------------LDDNAI------------TPSAL-YQCHTRRVKKLA 154 (763)
Q Consensus 105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~-----------------~~~~~~------------~~~~~-~~~h~~~v~~l~ 154 (763)
.+..+|++++.|+.|++||+....... ...... .+... ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 322799999999999999997522100 000000 00112 367999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE
Q 004293 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG 234 (763)
Q Consensus 155 ~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg 234 (763)
|+| ++.+|+++ .|+.|++||++..... ..++.... .....|...|++++|+|+++++|++|
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDRS-----------FNIVDIKP------ANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECCC------SSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCce-----------eeeeeccc------ccccccCcceEEEEECCCCCcEEEEE
Confidence 999 67899898 7999999999853211 11111110 12335678899999999854899999
Q ss_pred eCCCcEEEEeCCCCCCC----cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 235 GSDAFARLYDRRMLPPL----TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 235 s~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+.|+.|++||+++++.. ..+.....+ .....+ .+|.. .|++++|+|+|++|++++. +.|++||+.+
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~-~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFF-------SEIIS-SISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHTT-CEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCc-cccccc-------cccCc-eEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 99999999999987642 221110000 000000 00111 5999999999999999999 9999999987
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-33 Score=298.19 Aligned_cols=205 Identities=16% Similarity=0.155 Sum_probs=168.0
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCc
Q 004293 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAE 118 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~ 118 (763)
+....+|.+.|++++|+|++++|++|+.|+.|+|||+.++. ....+ .+|...|.+++|+|+ +. +|++|+.||.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQGE 80 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETTSC
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCCCe
Confidence 34456899999999999999999999999999999998876 33444 489999999999999 79 9999999999
Q ss_pred EEEEEC-CCCCCCCCCCCCCCCceeeec--ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC---------CCCCCCC
Q 004293 119 VRLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCPPA 186 (763)
Q Consensus 119 I~iwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~ 186 (763)
|++||+ .... ...+.+ |...|.+++|+| +.+|++++.|+.|++||+++ .+..
T Consensus 81 i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--- 144 (342)
T 1yfq_A 81 ILKVDLIGSPS-----------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS--- 144 (342)
T ss_dssp EEEECSSSSSS-----------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---
T ss_pred EEEEEeccCCc-----------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee---
Confidence 999999 7532 466778 999999999999 58999999999999999986 3311
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCccc
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 265 (763)
.... +...|.+++|+|+ .+++++.|+.|++||+++ +......
T Consensus 145 ----------------------~~~~-~~~~v~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~----------- 187 (342)
T 1yfq_A 145 ----------------------NNTK-VKNKIFTMDTNSS---RLIVGMNNSQVQWFRLPLCEDDNGTI----------- 187 (342)
T ss_dssp ----------------------SSSS-SCCCEEEEEECSS---EEEEEESTTEEEEEESSCCTTCCCEE-----------
T ss_pred ----------------------eEEe-eCCceEEEEecCC---cEEEEeCCCeEEEEECCcccccccee-----------
Confidence 1111 5678999999986 299999999999999987 4321100
Q ss_pred ccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004293 266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
....+.. .|++++|+| ++++|++++.|+.|++|++...
T Consensus 188 -------~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 188 -------EESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -------EECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -------eecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 0012333 599999999 9999999999999999999874
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-34 Score=303.05 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=118.3
Q ss_pred eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004293 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+ .+|...|.+++|+|..++.+|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 467999999999999999999999999999999998875 45566 799999999999863226899999999999999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004293 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
|++++.. .....+.+|...|.+++|+|++ +.+|++++.|++|++||++.....
T Consensus 87 d~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~------------------ 140 (316)
T 3bg1_A 87 REENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW------------------ 140 (316)
T ss_dssp CCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE------------------
T ss_pred ECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc------------------
Confidence 9986321 2356778899999999999953 679999999999999999865310
Q ss_pred CCceeeccCCCCCccceEEEEEeCC
Q 004293 202 CGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
........|...|.+++|+|+
T Consensus 141 ----~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 141 ----EVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp ----EECCBTTSSSSCBCCCEECCC
T ss_pred ----ceeeeeccccCCcceEEEccc
Confidence 011223456778888999986
No 61
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-33 Score=308.50 Aligned_cols=198 Identities=14% Similarity=0.295 Sum_probs=164.7
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004293 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
..+|...|.+++| ++++|++|+.||.|++||+.+++.+..+ .+|...|.+++| + +.+|++|+.||.|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECC
Confidence 3467778999887 7999999999999999999999999988 799999999999 4 6899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004293 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
++ +.+..+.+|...|.+++|++ .++++++.||.|++||++++...
T Consensus 202 ~~----------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~---------------------- 246 (435)
T 1p22_A 202 TG----------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI---------------------- 246 (435)
T ss_dssp SC----------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----------------------
T ss_pred CC----------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----------------------
Confidence 73 34778889999999999974 58999999999999999886532
Q ss_pred eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004293 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v 285 (763)
.......+|...|.+++|+ +++|++|+.|+.|++||+++++.+..+ .+|.. .|.++
T Consensus 247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~-~v~~~ 302 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR-GIACL 302 (435)
T ss_dssp EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS-CEEEE
T ss_pred eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cCCCC-cEEEE
Confidence 0011223567789999993 569999999999999999987644332 23444 59999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 286 TFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 286 ~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+| ++.+|++++.|+.|++||+.++
T Consensus 303 ~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 303 QY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTC
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCCC
Confidence 98 4689999999999999999874
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-33 Score=297.77 Aligned_cols=174 Identities=15% Similarity=0.212 Sum_probs=139.9
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004293 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 162 (763)
+....+ .+|...|++++|+|+ +.+|++|+.|++|++||..+. .....+..|...|.+++|+| ++.+
T Consensus 55 ~~~~~l-~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~----------~~~~~~~~~~~~v~~~~~sp-~g~~ 120 (354)
T 2pbi_B 55 KTRRTL-KGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTT----------NKEHAVTMPCTWVMACAYAP-SGCA 120 (354)
T ss_dssp CEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTC----------CEEEEEECSSSCCCEEEECT-TSSE
T ss_pred EEEEEe-cCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCC----------CcceEEecCCCCEEEEEECC-CCCE
Confidence 445666 799999999999999 799999999999999998763 33566778899999999999 6789
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004293 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
+++++.|+.+++|++........ .. .......|...|.+++|+|+ +..|++++.|++|++
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~-----~~--------------~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENM-----AA--------------KKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCAL 180 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCS-----GG--------------GCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEE
T ss_pred EEEeeCCCCEEEEEEeccccccc-----cc--------------cceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Confidence 99999999999999876532100 00 01111246788999999997 689999999999999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 004293 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
||+++++.+..+ .+|.. .|++++|+| +|.+|++++.|+.|++||++++
T Consensus 181 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 181 WDVESGQLLQSF--------------------HGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp EETTTCCEEEEE--------------------ECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred EeCCCCeEEEEE--------------------cCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999987644332 34554 599999988 5789999999999999998874
No 63
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-33 Score=296.02 Aligned_cols=227 Identities=15% Similarity=0.231 Sum_probs=189.6
Q ss_pred CCCcccccccccchhhhhc---cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE
Q 004293 21 DTRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97 (763)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~ 97 (763)
-.+.+.++.+++|+..... ..+++.|++|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+ .+|...|.
T Consensus 33 l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~ 111 (319)
T 3frx_A 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVM 111 (319)
T ss_dssp EEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEE
T ss_pred EEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEE
Confidence 3456678999999843222 3457789999999999999999999999999999999999999999988 79999999
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC-----CCCEEEEEeCCCcE
Q 004293 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTL 172 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~~l~s~s~dg~i 172 (763)
+++|+|+ +.+|++|+.|++|++||++. .++..+.+|...|.+++|.|. ++.++++++.|+.|
T Consensus 112 ~~~~~~~--~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 112 SVDIDKK--ASMIISGSRDKTIKVWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEECTT--SCEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEEEcCC--CCEEEEEeCCCeEEEEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 9999999 79999999999999999974 347788899999999999984 23489999999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004293 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
++||+++.+. .....+|...|++++|+|+ +.+|++|+.|+.|++||+++++.+.
T Consensus 179 ~~wd~~~~~~-------------------------~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~ 232 (319)
T 3frx_A 179 KAWNLNQFQI-------------------------EADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMY 232 (319)
T ss_dssp EEEETTTTEE-------------------------EEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEE
T ss_pred EEEECCcchh-------------------------heeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEE
Confidence 9999987641 1122357789999999997 7899999999999999999865433
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+ ..+. .|.+++|+|++.+|++++. +.+++|++..
T Consensus 233 ~~--------------------~~~~--~v~~~~~sp~~~~la~~~~-~~i~v~~~~~ 267 (319)
T 3frx_A 233 TL--------------------SAQD--EVFSLAFSPNRYWLAAATA-TGIKVFSLDP 267 (319)
T ss_dssp EE--------------------ECCS--CEEEEEECSSSSEEEEEET-TEEEEEEETT
T ss_pred Ee--------------------cCCC--cEEEEEEcCCCCEEEEEcC-CCcEEEEeCc
Confidence 22 1121 5999999999998887765 4599999876
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-33 Score=298.25 Aligned_cols=236 Identities=13% Similarity=0.135 Sum_probs=180.6
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004293 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
...+++|.+.|++++|+|++++||+|+.||.|+|||+.++ +.+..+ .+|...|.+++|+|..++.+|++++.|+.
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4567899999999999999999999999999999999876 456666 78999999999999311689999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
|++||+..+..... .....++..+..|...|.+++|+|+. +.+|++++.||.|++||+++++....... ....
T Consensus 83 v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~ 156 (351)
T 3f3f_A 83 VKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-----TSEM 156 (351)
T ss_dssp EEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE-----EEEE
T ss_pred EEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc-----cccc
Confidence 99999987432110 11123467778899999999999942 78999999999999999998774421100 0000
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCC--CCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004293 198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
.........+...+.+++|+|+ .+.+|++++.|+.+.+|+...+... .+..+ .
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------~ 211 (351)
T 3f3f_A 157 -------KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-----------VAAKL-------P 211 (351)
T ss_dssp -------ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-----------EEEEC-------C
T ss_pred -------cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-----------eeeec-------C
Confidence 0011122356778999999996 4689999999999988887765321 01111 3
Q ss_pred CCCccceeEEEEcCCC----CEEEEEeCCCeEEEEECCCC
Q 004293 276 GRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 276 g~~~~~i~~v~~spdg----~~l~~~s~d~~i~iwd~~~~ 311 (763)
+|.. .|++++|+|++ ++|++++.|+.|++||+..+
T Consensus 212 ~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 212 GHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 3544 69999999998 89999999999999999874
No 65
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=298.52 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=190.0
Q ss_pred Ccccccccccchhhhhccccce-eeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEccCCCCceEEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCT 99 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~--~~~~~~~~~h~~~V~~v 99 (763)
+...++.|++|+....+..... ...+|.+.|++++|+|+|++||+|+.|++|+|||+.++ +++..+ .+|...|.++
T Consensus 33 s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v 111 (345)
T 3fm0_A 33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSV 111 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEE
T ss_pred EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEE
Confidence 4567899999985444333233 34789999999999999999999999999999999876 356667 7999999999
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004293 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+|+|+ +++|++|+.|++|++||+..... ..++..+.+|...|.+++|+| ++.+|++++.|++|++||++.
T Consensus 112 ~~sp~--~~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 112 AWAPS--GNLLATCSRDKSVWVWEVDEEDE-------YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEE 181 (345)
T ss_dssp EECTT--SSEEEEEETTSCEEEEEECTTSC-------EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEET
T ss_pred EEeCC--CCEEEEEECCCeEEEEECCCCCC-------eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecC
Confidence 99999 79999999999999999986321 133567789999999999999 668999999999999999876
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004293 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
.+. .......+|...|++++|+|+ +++|++|+.|++|+|||.........+.....
T Consensus 182 ~~~-----------------------~~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 182 DDW-----------------------VCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp TEE-----------------------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCE-----------------------EEEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 531 111223467889999999997 78999999999999999754332111100000
Q ss_pred --CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 260 --PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 260 --~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
...|+..+ .+.....|.+++|+|++..|++++.|+.|++|+....
T Consensus 238 ~~~~~~~~~~-------~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 238 DPSWKCICTL-------SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp -CEEEEEEEE-------CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCccceeEEe-------cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 00111111 2222236999999999999999999999999998763
No 66
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-33 Score=300.79 Aligned_cols=213 Identities=17% Similarity=0.203 Sum_probs=168.9
Q ss_pred cceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---ccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004293 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 42 ~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
......+|...|++++|+|++.+ ++++.||+|+|||+.+++.+... ..+|...|++++|+|+ +++|++|+.|+.
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCCe
Confidence 34455679999999999999865 56788999999999987654321 1489999999999999 799999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
|++||++++ .++..+.+|...|++++|+|++..++++++.||+|++||+++++...
T Consensus 163 v~iwd~~~~----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-------------- 218 (357)
T 4g56_B 163 VKVWDLSQK----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-------------- 218 (357)
T ss_dssp EEEEETTTT----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--------------
T ss_pred EEEEECCCC----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--------------
Confidence 999999873 44778889999999999999777789999999999999999876431
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
......+...+.+++|+|+++.+|++|+.|+.|++||+++++.+..+ .+|.
T Consensus 219 ---------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------------------~~~~ 269 (357)
T 4g56_B 219 ---------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------------------AVHS 269 (357)
T ss_dssp ---------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------------------CCCS
T ss_pred ---------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------------------eccc
Confidence 11122355678999999987889999999999999999987544322 3354
Q ss_pred ccceeEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 004293 279 SLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~spdg-~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .|++++|+|++ ++|++++.|++|+|||++++
T Consensus 270 ~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 270 Q-NITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp S-CEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred e-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 4 59999999987 57889999999999998763
No 67
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.9e-35 Score=317.57 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=165.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
..+++++|+|+|++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+ +++|++|+.|+.|++||+...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--- 129 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFN--- 129 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSC---
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCc---
Confidence 34558999999999999999999999999887765544 344 44455577888 799999999999999999863
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004293 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
.....+.+|.+.|++++|+| ++.+|++++.|+.|++||+++++.. ..
T Consensus 130 -------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~-------------------------~~ 176 (420)
T 3vl1_A 130 -------LQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNP-------------------------RT 176 (420)
T ss_dssp -------EEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCC-------------------------EE
T ss_pred -------ceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCc-------------------------eE
Confidence 33566678999999999999 6689999999999999999887532 11
Q ss_pred CCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccc--ccc-ccCCCCCccceeEEEE
Q 004293 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC--PMH-LSEHGRSSLHLTHVTF 287 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~g~~~~~i~~v~~ 287 (763)
..+|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.........+.... +.. ..........+++++|
T Consensus 177 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 1257788999999997 78999999999999999998876555432211111111000 000 0000001125778888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC
Q 004293 288 SPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+|++++|++++.|+.|++||+.++
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999874
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=298.61 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=165.6
Q ss_pred hhccccceeeccccCceEEEEeCCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEEccCCCCceEEEEEeeCCCCcEEE
Q 004293 37 VRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELVV 111 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~---g~~Lasgs~D~~v~iWd~~~-~~~~-~~~~~~h~~~V~~v~~~p~~~~~~l~ 111 (763)
....+.+..+++|.+.|++++|+|+ |++|++|+.|+.|+|||+.+ +..+ ..+ .+|...|.+++|+|+ +++|+
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~ 102 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKVF 102 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEEE
Confidence 4556778889999999999999999 69999999999999999997 6555 445 789999999999998 79999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE--ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004293 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (763)
Q Consensus 112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 189 (763)
+++.||.|++||+.... ...+..|...|.+++| +| ++.+|++++.||.|++||+++++..
T Consensus 103 s~~~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~------ 164 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQ-----------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPM------ 164 (368)
T ss_dssp EEETTSEEEEEETTTTE-----------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCS------
T ss_pred EEcCCCcEEEEEcCCCC-----------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEE------
Confidence 99999999999998632 3346679999999999 77 6688999999999999999987633
Q ss_pred CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004293 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
..+ . ....+.++.+.+ ..+++++.++.+++||++........ .
T Consensus 165 -----~~~-~--------------~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~------------~-- 207 (368)
T 3mmy_A 165 -----MVL-Q--------------LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRR------------I-- 207 (368)
T ss_dssp -----EEE-E--------------CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEE------------C--
T ss_pred -----EEE-e--------------cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhh------------c--
Confidence 111 0 112456666665 38889999999999999865321110 0
Q ss_pred ccccCCCCCccceeEEEEcCCCCE----EEEEeCCCeEEEEECCCC
Q 004293 270 MHLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 270 ~~~~~~g~~~~~i~~v~~spdg~~----l~~~s~d~~i~iwd~~~~ 311 (763)
.......+..+++.++... +++++.|+.|++|++...
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 208 -----ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -----CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -----cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 0011113666666665554 999999999999999874
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-32 Score=302.14 Aligned_cols=232 Identities=19% Similarity=0.228 Sum_probs=188.6
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
...++.|++|+ +.+.+++..+.+|.+.|++++|+|++ +|++|+.|++|++||+.+++.+..+ .+|...|.+++|++
T Consensus 138 gs~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~ 213 (464)
T 3v7d_B 138 GADDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVE 213 (464)
T ss_dssp EETTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEE
T ss_pred EcCCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEec
Confidence 45678999998 56778899999999999999999988 9999999999999999999999988 79999999999997
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC-------------CCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN-------------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
..++.+|++|+.|+.|++||+........... ....+..+.+|...|.++. + ++.++++++.||
T Consensus 214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~ 290 (464)
T 3v7d_B 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDN 290 (464)
T ss_dssp SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTS
T ss_pred CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCC
Confidence 54378999999999999999986432110000 0012456778999998885 4 457999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004293 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
.|++||+++++. +....+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.
T Consensus 291 ~i~vwd~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 291 TLIVWDVAQMKC-------------------------LYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp CEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEE
T ss_pred eEEEEECCCCcE-------------------------EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE
Confidence 999999987652 1222356788999999997 68999999999999999998754
Q ss_pred CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+..+ .+|.. .|++++|+ +.+|++++.|+.|++||+.++
T Consensus 345 ~~~~--------------------~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 345 MYTL--------------------QGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEE--------------------CCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEEE--------------------eCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 4332 34554 59999997 579999999999999999874
No 70
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-33 Score=301.63 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=127.6
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec------------------ccCceeE
Q 004293 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKK 152 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~ 152 (763)
+|...|.+++|+|+ +++|++|+ ++.+++|++..+.. +..+.. +...|.+
T Consensus 62 ~h~~~V~~v~fspd--g~~la~g~-~~~v~i~~~~~g~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 62 DHTSVVCCVKFSND--GEYLATGC-NKTTQVYRVSDGSL----------VARLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp ECSSCCCEEEECTT--SSEEEEEC-BSCEEEEETTTCCE----------EEEECC-----------------CCCCBEEE
T ss_pred CCCCEEEEEEECCC--CCEEEEEc-CCcEEEEEecCCCE----------EEEecCccccccccccccccccCCCceeEEE
Confidence 69999999999999 79999976 78999999986431 222322 2335999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE
Q 004293 153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (763)
Q Consensus 153 l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~ 232 (763)
++|+| ++.+|++|+.|+.|++||+.+++. +....+|...|.+++|+|+ +.+|+
T Consensus 129 v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~p~-~~~l~ 181 (393)
T 1erj_A 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKI-------------------------VMILQGHEQDIYSLDYFPS-GDKLV 181 (393)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEECTT-SSEEE
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCcE-------------------------EEEEccCCCCEEEEEEcCC-CCEEE
Confidence 99999 668999999999999999987642 1122457788999999997 68999
Q ss_pred EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004293 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 233 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+++.|+.|++||+++++....+ . +.. .+++++|+| ++++|++++.|+.|++||+.++
T Consensus 182 s~s~d~~v~iwd~~~~~~~~~~--------------------~-~~~-~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~ 239 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQCSLTL--------------------S-IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEE--------------------E-CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred EecCCCcEEEEECCCCeeEEEE--------------------E-cCC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999999986532211 0 112 499999999 8999999999999999999874
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-33 Score=331.31 Aligned_cols=250 Identities=16% Similarity=0.197 Sum_probs=210.3
Q ss_pred ccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC
Q 004293 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~ 104 (763)
..+..+++|+ ..+.+.+..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+
T Consensus 32 ~~~g~v~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~ 108 (814)
T 3mkq_A 32 LYSGRVEIWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT 108 (814)
T ss_dssp ETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS
T ss_pred eCCCEEEEEE--CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC
Confidence 4467899998 4567788899999999999999999999999999999999999999999988 789999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 004293 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (763)
Q Consensus 105 ~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~ 184 (763)
+.+|++++.||.|++||+.... .....+.+|...|.+++|+|.++.+|++++.||.|++||++.+...
T Consensus 109 --~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~- 176 (814)
T 3mkq_A 109 --KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN- 176 (814)
T ss_dssp --SSEEEEEETTSEEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-
T ss_pred --CCEEEEEcCCCEEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-
Confidence 7999999999999999998631 3366788899999999999966789999999999999999876532
Q ss_pred CCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004293 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
..+. ..+...+.+++|+| + +.+|++++.|+.|++||+++++.+..+
T Consensus 177 ----------~~~~-------------~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~-------- 224 (814)
T 3mkq_A 177 ----------FTLT-------------TGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATL-------- 224 (814)
T ss_dssp ----------EEEE-------------CCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEE--------
T ss_pred ----------eEEe-------------cCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEE--------
Confidence 1111 12336788999999 6 679999999999999999876533222
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004293 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (763)
.+|.. .|++++|+|++++|++++.||.|++||+.++........+...+..++|+|+..
T Consensus 225 ------------~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 225 ------------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp ------------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG
T ss_pred ------------cCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC
Confidence 23444 599999999999999999999999999999776666666677888899998754
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-32 Score=300.41 Aligned_cols=246 Identities=15% Similarity=0.233 Sum_probs=195.3
Q ss_pred CCchhhhhhccccCC-CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 004293 8 DGSIYDMLDTRHTDT-RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH 86 (763)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~ 86 (763)
++.+..+|.+-..+. ....++.|++|+....+......+.+|...|++|+|+|+|++||+|+.|++|+|||+.+++.+.
T Consensus 104 ~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 104 NDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp CCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 455566665542222 2346899999995544444444556788999999999999999999999999999999999999
Q ss_pred EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEE
Q 004293 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (763)
Q Consensus 87 ~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~ 166 (763)
.+ .+|...|.++.|+ +.+|++|+.|+.+++||..... ..+..+.+|...+..+.|+| ++.+++++
T Consensus 184 ~~-~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~-~g~~l~s~ 248 (420)
T 4gga_A 184 NM-TSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASG 248 (420)
T ss_dssp EE-CCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred EE-eCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecC-CCCeeeee
Confidence 98 7999999998886 4699999999999999998632 34677889999999999999 66899999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE--eCCCcEEEEe
Q 004293 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYD 244 (763)
Q Consensus 167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg--s~Dg~i~iwd 244 (763)
+.|+.|++||+..++... ..+.....+...|.+++|+|.++.+++++ +.|+.|++||
T Consensus 249 ~~D~~v~i~~~~~~~~~~---------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd 307 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGW---------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307 (420)
T ss_dssp ETTSCEEEEESSCCSSCS---------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred eccccceEEeeccccccc---------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence 999999999998875321 01122235677899999999888888775 4799999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~ 311 (763)
+++++.+..+ ..+. .+.++.|+|+++.|++++ .|+.|++||+.++
T Consensus 308 ~~t~~~~~~~--------------------~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 308 VCSGACLSAV--------------------DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTTEEEEEE--------------------ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred CCccccceee--------------------cccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 9987544322 1122 499999999999999876 5899999998773
No 73
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=292.75 Aligned_cols=243 Identities=17% Similarity=0.201 Sum_probs=182.2
Q ss_pred CCcccccccccchhhhhccccceee-cc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEEccCC
Q 004293 22 TRPDVNHSLQMHSSLVRRLSQEREL-EG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGH 92 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~l-~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-------~~~~~~~~~~h 92 (763)
.+...++.+++|+......+.+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||+.. .+.+..+ .+|
T Consensus 28 as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h 106 (330)
T 2hes_X 28 ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGH 106 (330)
T ss_dssp EEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C--
T ss_pred EEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCC
Confidence 3456788999998544445566666 45 999999999999999999999999999999853 3456666 799
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcE
Q 004293 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
...|.+++|+|+ +++|++|+.|++|++||+...... .+++..+.+|...|.+++|+| ++.+|++++.|++|
T Consensus 107 ~~~V~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~------~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i 177 (330)
T 2hes_X 107 ENEVKGVAWSND--GYYLATCSRDKSVWIWETDESGEE------YECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTV 177 (330)
T ss_dssp --CEEEEEECTT--SCEEEEEETTSCEEEEECCTTCCC------CEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred CCcEEEEEECCC--CCEEEEEeCCCEEEEEeccCCCCC------eEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence 999999999999 799999999999999999542111 234677889999999999999 66899999999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC-CcEEEEEeCCCcEEEEeCCCCCCC
Q 004293 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
++||++.... ..+....+|...|.+++|+|+. +.+|++|+.|++|++||++.....
T Consensus 178 ~iW~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 178 RIWKDYDDDW-----------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234 (330)
T ss_dssp EEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEECCCCCe-----------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence 9999876420 1122334678899999999963 468999999999999999764311
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.... ..+...+ ...|.. .|.+++|++++ +|++++.|+.|++|+..+
T Consensus 235 ~~~~-----~~~~~~~------~~~h~~-~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 235 DQQE-----WVCEAIL------PDVHKR-QVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp SCEE-----EEEEEEC------CSCCSS-CEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred ccce-----eEEeeec------cccccc-ceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 0000 0001111 112444 69999999776 799999999999999765
No 74
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-32 Score=284.87 Aligned_cols=168 Identities=20% Similarity=0.292 Sum_probs=141.0
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004293 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 162 (763)
.....+ .+|...|++++|+|+ +++|++++.|+.|++|++..+ .....+.+|...|.+++|+| ++.+
T Consensus 14 ~~~~~~-~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~ 79 (312)
T 4ery_A 14 ALKFTL-AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDG----------KFEKTISGHKLGISDVAWSS-DSNL 79 (312)
T ss_dssp EEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSE
T ss_pred eeEEEE-cccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCc----------ccchhhccCCCceEEEEEcC-CCCE
Confidence 445556 799999999999999 799999999999999999863 33677889999999999999 6689
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004293 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
|++++.|+.|++||+++++.. ....+|...|.+++|+|+ +++|++|+.|+.|++
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCL-------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 133 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEE-------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence 999999999999999876521 112246778999999997 789999999999999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
||+++++.+..+ .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus 134 wd~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 181 (312)
T 4ery_A 134 WDVKTGKCLKTL--------------------PAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181 (312)
T ss_dssp EETTTCCEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCEEEEEe--------------------cCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 999987543322 22433 5999999999999999999999999999874
No 75
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-32 Score=289.13 Aligned_cols=230 Identities=17% Similarity=0.227 Sum_probs=181.1
Q ss_pred CCcccccccccchhhhh-----ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCce
Q 004293 22 TRPDVNHSLQMHSSLVR-----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V 96 (763)
.+...++.+++|+.... ...+...+.+|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+ .+|...|
T Consensus 43 ~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v 121 (343)
T 2xzm_R 43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEV 121 (343)
T ss_dssp EEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCE
T ss_pred EEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcE
Confidence 34667889999985432 13456789999999999999999999999999999999999999999888 7999999
Q ss_pred EEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC---------CCEEEEEe
Q 004293 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN---------PHVVWSAS 167 (763)
Q Consensus 97 ~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~~l~s~s 167 (763)
.+++|+|+ +.+|++++.|++|++||+..... .......+|...|.+++|+|.. +.+|++++
T Consensus 122 ~~v~~sp~--~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 122 YSVAFSPD--NRQILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EEEEECSS--TTEEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EEEEECCC--CCEEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence 99999999 79999999999999999973110 0112223789999999999954 26899999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004293 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.||.|++||..... ......|...|.+++|+|+ +++|++|+.|+.|++||++.
T Consensus 192 ~d~~i~iwd~~~~~--------------------------~~~~~~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 192 WDGRLKVWNTNFQI--------------------------RYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp TTSEEEEEETTTEE--------------------------EEEEECCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSC
T ss_pred CCCEEEEEcCCCce--------------------------eEEEcCccccceEEEECCC-CCEEEEEcCCCeEEEEECCC
Confidence 99999999943210 1112356778999999997 78999999999999999954
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.... ...+ .+.. .|++++|+|++.+|+ ++.|+.|++|++.+.
T Consensus 245 ~~~~------------~~~~--------~~~~-~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYP------------QREF--------DAGS-TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSC------------SEEE--------ECSS-CEEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred Cccc------------ceee--------cCCC-cEEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence 3211 1111 0111 499999999998765 556888999999874
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=287.07 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=112.7
Q ss_pred ccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004293 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
+++..+++|.+.|++++|+|++++||+|+.|+.|+|||+. +++.+..+ .+|...|++++|+|+.++.+|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4677899999999999999999999999999999999998 55667777 79999999999987633689999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCC
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
|++||+..+. ...+..+..|...|.+++|+|++ +.+|++++.|+.|++||++...
T Consensus 81 v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 81 VLIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp EEEEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred EEEEEcCCCc--------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 9999998632 12467778899999999999942 6899999999999999998764
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=300.82 Aligned_cols=230 Identities=14% Similarity=0.102 Sum_probs=177.5
Q ss_pred CCcccccccccchhhhhcccc--ceeeccccCceEEEEeCCC------CCEEEEEeCCCcEEEEeCCCCeE---------
Q 004293 22 TRPDVNHSLQMHSSLVRRLSQ--ERELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL--------- 84 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~--~~~l~gH~~~V~~l~fsp~------g~~Lasgs~D~~v~iWd~~~~~~--------- 84 (763)
.+.+.+..|++|+....+... ...+.+|.+.|++|+|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 345678899999854333221 2457788999999999996 57999999999999999987632
Q ss_pred --EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEE--EEecCCC
Q 004293 85 --LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGNP 160 (763)
Q Consensus 85 --~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~sp~~~ 160 (763)
...+ .+|...|++++|+|+ ..|++|+.||+|++||++++. .+...+.+|...|++| +|+| ++
T Consensus 257 ~p~~~l-~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~-~g 322 (524)
T 2j04_B 257 KPSLTL-SLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSD-FE 322 (524)
T ss_dssp SCSEEE-CCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCT-TS
T ss_pred CceEEE-EcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCC-CC
Confidence 1345 689999999999986 489999999999999998632 2356688999999999 4566 55
Q ss_pred -CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCc
Q 004293 161 -HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (763)
Q Consensus 161 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~ 239 (763)
.+|+|++.|++|++||+++++.. ..+... .....|.+++|+|+ +..|++++.|++
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~~-----------~~~~~~------------~~~~~v~~v~fsp~-~~~l~s~~~d~t 378 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIATT-----------KTTVSR------------FRGSNLVPVVYCPQ-IYSYIYSDGASS 378 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHHH-----------CEEEEE------------CSCCSCCCEEEETT-TTEEEEECSSSE
T ss_pred CeEEEEeccCCeEEEEECCCCCcc-----------cccccc------------cccCcccceEeCCC-cCeEEEeCCCCc
Confidence 89999999999999999876521 111100 00124788999997 678999999999
Q ss_pred EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|++||++++..+..+ .+|.. .|++|+|+|+|++|++|+.|++|++||+..
T Consensus 379 v~lwd~~~~~~~~~l--------------------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 379 LRAVPSRAAFAVHPL--------------------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEETTCTTCCEEE--------------------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEEEECcccccceee--------------------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999986543222 34555 699999999999999999999999999865
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-31 Score=285.85 Aligned_cols=224 Identities=17% Similarity=0.274 Sum_probs=185.8
Q ss_pred cccccccccchhhhhccccceeecc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
...++.+++|+. .+.+....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|+
T Consensus 109 ~~~d~~v~lw~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~ 185 (401)
T 4aez_A 109 VALERNVYVWNA--DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN 185 (401)
T ss_dssp EEETTEEEEEET--TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE
T ss_pred EECCCeEEEeeC--CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC
Confidence 345788999984 44455555554 8999999999999999999999999999999999999998 7999999999994
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004293 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 103 p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
+.+|++++.|+.|++||++... .....+.+|.+.|.+++|+| ++.+|++++.||.|++||+++.+.
T Consensus 186 ----~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~ 251 (401)
T 4aez_A 186 ----RHVLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP 251 (401)
T ss_dssp ----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE
T ss_pred ----CCEEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc
Confidence 4699999999999999998532 34677889999999999999 678999999999999999987652
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--CCCcEEEEeCCCCCCCcccCCCCCC
Q 004293 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSP 260 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (763)
. .....|...|.+++|+|++..++++++ .|+.|++||+++++.+..+.
T Consensus 252 ~-------------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----- 301 (401)
T 4aez_A 252 K-------------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----- 301 (401)
T ss_dssp E-------------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-----
T ss_pred c-------------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----
Confidence 1 112246778999999998778888876 79999999999876443221
Q ss_pred CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004293 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (763)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~ 311 (763)
+.. .|++++|+|++++|++++ .|+.|++|++.++
T Consensus 302 ----------------~~~-~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 302 ----------------AGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ----------------CSS-CEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ----------------CCC-cEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 112 599999999999999954 7999999998773
No 79
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-32 Score=296.12 Aligned_cols=225 Identities=13% Similarity=0.174 Sum_probs=157.6
Q ss_pred cchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee-CCCCcEE
Q 004293 32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELV 110 (763)
Q Consensus 32 ~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~l 110 (763)
....++++++..-.+.... .|+|++..+++++ .|+ .+++.+..+..+|...|++++|+| + +.+|
T Consensus 15 ~~~~~l~~~~~~p~~~~~~------~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~--~~~l 79 (437)
T 3gre_A 15 SIEKFLSTFKILPPLRDYK------EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE--TPYL 79 (437)
T ss_dssp CCGGGTTCC-CCCCGGGCG------GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS--SCEE
T ss_pred HHHHHhccCCCCCChhchh------hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC--CCEE
Confidence 3344444444444443322 3788998888765 488 457788888678999999999999 7 7999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC---CCCCCCCCC
Q 004293 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSCPPAG 187 (763)
Q Consensus 111 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~ 187 (763)
++|+.||+|++||+....... ...+...+ .|...|.+|+|+| ++.+|++++.||.|++||+. .++..
T Consensus 80 ~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~---- 149 (437)
T 3gre_A 80 ITGSDQGVIKIWNLKEIIVGE----VYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV---- 149 (437)
T ss_dssp EEEETTSEEEEEEHHHHHTTC----CCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE----
T ss_pred EEecCCceEEEeECcccccCc----ccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee----
Confidence 999999999999997511100 01223333 5999999999999 67899999999999999995 33211
Q ss_pred CCCcccceEEEecCCCceeeccCCC-CCccceEEEE--EeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004293 188 SSHQECRNILLDLRCGAKRSLADPP-KQTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~--~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (763)
..+ ... ....+...+ ++...+.++. ++|+ +.+|++|+.|+.|++||+++++.+..+..
T Consensus 150 -------~~~-~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------- 210 (437)
T 3gre_A 150 -------KFL-NCE--CIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIEN-------- 210 (437)
T ss_dssp -------EEE-EEE--EEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEEC--------
T ss_pred -------ecc-ccc--eeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEcc--------
Confidence 000 000 111111111 1345677777 5575 68999999999999999998764433210
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
..|.. .|++++|+|++++|++++.|+.|++||++++
T Consensus 211 ----------~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 211 ----------SPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp ----------CGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred ----------CCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence 01333 6999999999999999999999999999873
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.6e-31 Score=289.20 Aligned_cols=212 Identities=21% Similarity=0.216 Sum_probs=165.5
Q ss_pred CceEEEEeCCCCCE-EEEEeCCCcEEEEeCCCCeE----EEEEccCCCCceEEEEEee-CCCCcEEEEEeCCCcEEEEEC
Q 004293 51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 51 ~~V~~l~fsp~g~~-Lasgs~D~~v~iWd~~~~~~----~~~~~~~h~~~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~ 124 (763)
.....++++|+... +++++.||.|+|||+.+... +..+ .+|...|++++|+| + +.+|++|+.||.|++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEEC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEc
Confidence 34556889987754 44688999999999966432 2334 68999999999999 6 799999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004293 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
....... ....++..+.+|...|.+++|+|++..+|++++.||.|++||+++++.. ..+
T Consensus 112 ~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~---- 170 (402)
T 2aq5_A 112 PDGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------LTL---- 170 (402)
T ss_dssp CTTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE--------------EEE----
T ss_pred cCCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc--------------EEE----
Confidence 8742110 0114477888999999999999965579999999999999999876521 100
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004293 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
....|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+. .+|....+.+
T Consensus 171 -----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~~ 225 (402)
T 2aq5_A 171 -----GPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD-------------------RPHEGTRPVH 225 (402)
T ss_dssp -----CTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE-------------------CSSCSSSCCE
T ss_pred -----ecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec-------------------cCCCCCcceE
Confidence 01346778999999996 7899999999999999999865432220 1244435899
Q ss_pred EEEcCCCCEEEEE---eCCCeEEEEECCCC
Q 004293 285 VTFSPNGEEVLLS---YSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~spdg~~l~~~---s~d~~i~iwd~~~~ 311 (763)
++|+|++++|+++ +.|+.|++||+.+.
T Consensus 226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 9999999999999 78999999999874
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.9e-30 Score=281.81 Aligned_cols=223 Identities=15% Similarity=0.181 Sum_probs=160.0
Q ss_pred CceEEEEeCCCC----------CEEEEEeC----CCcEEEEeCC--------------------------CCeEEEEEcc
Q 004293 51 GCVNAISWNSKG----------SLLISGSD----DTHINVWSYS--------------------------SRKLLHSIET 90 (763)
Q Consensus 51 ~~V~~l~fsp~g----------~~Lasgs~----D~~v~iWd~~--------------------------~~~~~~~~~~ 90 (763)
-+..++.|.|+. .+|+.|+. ...|.+.++. +++.......
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 467889999864 46777764 3456676532 1222212225
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004293 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
.|.+.|++++|+|+. +.+|++++.||.|++||+..............++..+.+|...|.+|+|+|.+..+|++++.||
T Consensus 126 ~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred cCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 799999999999973 5799999999999999998621111101113557888899999999999996655999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004293 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
.|++||+...... ...+ ........|...|.+++|+|.++.+|++++.|+.|++||+++...
T Consensus 205 ~i~vwd~~~~~~~----------~~~~--------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 205 TICLWDINATPKE----------HRVI--------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp CEEEEETTSCCBG----------GGEE--------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred eEEEEeCCCCCCC----------Ccee--------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 9999999875321 0000 011222357788999999997688999999999999999997631
Q ss_pred CcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 004293 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~ 310 (763)
.. ++..+ .+|.. .|++++|+|+++ +|++++.|+.|++||+++
T Consensus 267 ~~----------~~~~~-------~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 267 SK----------PSHTV-------DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp SS----------CSEEE-------ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred Cc----------ceeEe-------ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 10 11111 23444 599999999997 588999999999999987
No 82
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.2e-30 Score=285.48 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=160.0
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCT 99 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v 99 (763)
.+..+..|++|+...........+.+|.+.|++|+|+| ++.+|+||+.|++|+|||++++...... .. +...+.++
T Consensus 137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~ 215 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA-SSDTINIWFCSL 215 (435)
T ss_dssp EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-CCSSCSCCCCCE
T ss_pred EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-ccCCCCccEEEE
Confidence 45678999999966666666777889999999999998 7899999999999999999876543333 33 34567899
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004293 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+|+|+ +.+|++|+.||.|++||++. ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++
T Consensus 216 ~~~~~--~~~l~~g~~dg~i~~wd~~~-----------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 216 DVSAS--SRMVVTGDNVGNVILLNMDG-----------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp EEETT--TTEEEEECSSSBEEEEESSS-----------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred EECCC--CCEEEEEeCCCcEeeeccCc-----------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 99999 79999999999999999974 336678899999999999997778999999999999999988
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004293 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
.+... .+....+|...|++++|+|+ +.+|++++.|+.|+|||++++....
T Consensus 283 ~~~~~----------------------~~~~~~~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 283 VRGKA----------------------SFLYSLPHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp CCSSS----------------------CCSBCCBCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSEE
T ss_pred ccccc----------------------eEEEeeeccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccce
Confidence 75321 12223357788999999997 7899999999999999999876443
No 83
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-31 Score=285.74 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=143.7
Q ss_pred CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEEC----CCCCCCCCCCCCCCCceeee--
Q 004293 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNL----SRFSGRGLDDNAITPSALYQ-- 144 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~----~~~~~~~~~~~~~~~~~~~~-- 144 (763)
..+.+|++......... ..|...|.+++|+|+ +. +|++|+.|+.|++||+ ..+..... ......+.
T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~ 97 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWK----LTIIAELRHP 97 (425)
T ss_dssp ---------CCCEECEE-EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEE----EEEEEEEECC
T ss_pred cccccccchhhhhheee-eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCcccccc----cccccccccc
Confidence 34568888766555444 467799999999999 67 9999999999999999 65321000 00122222
Q ss_pred --------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc
Q 004293 145 --------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (763)
Q Consensus 145 --------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (763)
+|.+.|++++|+| ++.+|++++.||.|++||. +++. +.....|..
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~~~~-------------------------~~~~~~~~~ 150 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-TGAL-------------------------LNVLNFHRA 150 (425)
T ss_dssp CCCC------CBCEEEEEECT-TSSEEEEEETTSCEEEEET-TSCE-------------------------EEEECCCCS
T ss_pred ccccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-CCCe-------------------------eeeccCCCc
Confidence 2688999999999 6789999999999999993 3221 112235678
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004293 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (763)
Q Consensus 217 ~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~ 296 (763)
.|.+++|+|+ +++|++++.|+.|++||+++++.+..+.....+....... ........+.+++|+|++ .+++
T Consensus 151 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~ 222 (425)
T 1r5m_A 151 PIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE------NHSGDGSLGVDVEWVDDD-KFVI 222 (425)
T ss_dssp CEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------CCCBSCCEEEETT-EEEE
T ss_pred cEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec------cccCCcceeeEEEEcCCC-EEEE
Confidence 8999999997 6899999999999999999876554432211110000000 000111138899999986 4889
Q ss_pred EeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004293 297 SYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 297 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
++.|+.|++||+.++........+...+..++|+|+.
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 9999999999999976555555666777788888753
No 84
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.8e-30 Score=301.59 Aligned_cols=232 Identities=20% Similarity=0.239 Sum_probs=186.6
Q ss_pred CCcccccccccchhhhhc---cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE
Q 004293 22 TRPDVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98 (763)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~---~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~ 98 (763)
.+.+.++.|++|+..... ....+.+.+|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+ .+|...|.+
T Consensus 399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~ 477 (694)
T 3dm0_A 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLS 477 (694)
T ss_dssp EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEE
T ss_pred EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEE
Confidence 346678999999843222 2345789999999999999999999999999999999999999999988 799999999
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEEC
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDF 177 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~ 177 (763)
++|+|+ +.+|++|+.|++|++||....... .......+|...|.+++|+|++ ..++++++.|++|++||+
T Consensus 478 ~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 478 VAFSLD--NRQIVSASRDRTIKLWNTLGECKY-------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp EEECTT--SSCEEEEETTSCEEEECTTSCEEE-------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred EEEeCC--CCEEEEEeCCCEEEEEECCCCcce-------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 999999 799999999999999998642100 0112235789999999999954 258999999999999999
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCC
Q 004293 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
++.+. .....+|...|++++|+|+ +++|++|+.|+.|++||+++++.+..+
T Consensus 549 ~~~~~-------------------------~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~--- 599 (694)
T 3dm0_A 549 SNCKL-------------------------RSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSL--- 599 (694)
T ss_dssp TTCCE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECC---
T ss_pred CCCcE-------------------------EEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEe---
Confidence 87642 1122357788999999997 789999999999999999987544322
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
..+ ..|++++|+|++.+|+++ .++.|++||+.++.
T Consensus 600 -----------------~~~--~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 600 -----------------EAN--SVIHALCFSPNRYWLCAA-TEHGIKIWDLESKS 634 (694)
T ss_dssp -----------------BCS--SCEEEEEECSSSSEEEEE-ETTEEEEEETTTTE
T ss_pred -----------------cCC--CcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCC
Confidence 111 259999999999876665 46679999998853
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=9.4e-30 Score=265.49 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=181.2
Q ss_pred cccccccccchhhhhcccccee--eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004293 24 PDVNHSLQMHSSLVRRLSQERE--LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~--l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~ 101 (763)
...++.|++|+. .+.++++. +.+|...|++++|+|++++||+|+.|++|+|||+++++.+..+ .+|...+.++.+
T Consensus 41 vg~D~tV~iWd~--~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~ 117 (318)
T 4ggc_A 41 VALDNSVYLWSA--SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW 117 (318)
T ss_dssp EEETTEEEEEET--TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE
T ss_pred EEeCCEEEEEEC--CCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeec
Confidence 346899999994 44555554 4578889999999999999999999999999999999999998 799998887665
Q ss_pred eeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004293 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 102 ~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
. +.++++++.++.+++|+..... ..+..+.+|...+..+.+.+ .+.++++++.||.|++||+++++
T Consensus 118 ~----~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 118 N----SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp E----TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBT
T ss_pred C----CCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCc
Confidence 5 4699999999999999988632 34677889999999999999 66899999999999999998875
Q ss_pred CCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE--EEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004293 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL--LVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l--~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
.... .......+...|.+++++|.++..+ ++++.++.|++||.+........
T Consensus 184 ~~~~---------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----- 237 (318)
T 4ggc_A 184 GGWV---------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----- 237 (318)
T ss_dssp TBSC---------------------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-----
T ss_pred cccc---------------------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-----
Confidence 3210 1111223556789999999876665 45667899999999876432111
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~ 311 (763)
.+.. .+..+.|+|++..+++++ .|+.|++||+.++
T Consensus 238 ----------------~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 238 ----------------DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp ----------------ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred ----------------ccee-eeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 1222 599999999999988776 5999999998774
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2.2e-30 Score=278.33 Aligned_cols=179 Identities=17% Similarity=0.158 Sum_probs=141.3
Q ss_pred EEeCCCCeEEEEEccCCCCceEEEEEeeCCCC-cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEE
Q 004293 76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSD-ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA 154 (763)
Q Consensus 76 iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 154 (763)
+|++...+....+ .+|...|++++|+|+ + .+|++|+.|+.|++||+..... .......+|...|.+++
T Consensus 57 ~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~h~~~v~~~~ 125 (383)
T 3ei3_B 57 IRSLKSYKLHRTA-SPFDRRVTSLEWHPT--HPTTVAVGSKGGDIILWDYDVQNK--------TSFIQGMGPGDAITGMK 125 (383)
T ss_dssp HHHHTTCEEEEEE-CCCSSCEEEEEECSS--CTTEEEEEEBTSCEEEEETTSTTC--------EEEECCCSTTCBEEEEE
T ss_pred cccccccceEEec-cCCCCCEEEEEECCC--CCCEEEEEcCCCeEEEEeCCCccc--------ceeeecCCcCCceeEEE
Confidence 3444566667777 799999999999999 6 8999999999999999986432 11222346999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE
Q 004293 155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG 234 (763)
Q Consensus 155 ~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg 234 (763)
|+|+++.+|++++.|+.|++||++... ...+.....+...|.+++|+|+ +.+|++|
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 181 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVS-RQMLATG 181 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETT-TTEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCC-CCEEEEE
Confidence 999667899999999999999998532 1122223345678999999997 6899999
Q ss_pred eCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004293 235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 235 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~ 311 (763)
+.|+.|++||++ ++.+. .+ .+|.. .|++++|+|+++ +|++++.|+.|++||+.+.
T Consensus 182 ~~d~~i~i~d~~-~~~~~-------------~~-------~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 182 DSTGRLLLLGLD-GHEIF-------------KE-------KLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp ETTSEEEEEETT-SCEEE-------------EE-------ECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGGC
T ss_pred CCCCCEEEEECC-CCEEE-------------Ee-------ccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCC
Confidence 999999999995 32221 11 23444 599999999999 8999999999999999874
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.1e-29 Score=267.64 Aligned_cols=177 Identities=20% Similarity=0.276 Sum_probs=136.5
Q ss_pred CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004293 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 81 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
+.+...++ .||.+.|++|+|+|+. +++|+||+.|++|+|||+....... ..+...+.+|...|.+++|+| ++
T Consensus 27 ~~~l~~tL-~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s~-dg 98 (340)
T 4aow_A 27 QMTLRGTL-KGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNY-----GIPQRALRGHSHFVSDVVISS-DG 98 (340)
T ss_dssp EEEEEEEE-CCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCS-----EEEEEEECCCSSCEEEEEECT-TS
T ss_pred ceEEEEEE-CCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCccc-----ceeeEEEeCCCCCEEEEEECC-CC
Confidence 33455567 8999999999999984 6899999999999999998643221 234677889999999999999 67
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004293 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
.+|++++.|+.|++|+....... .....+...+..+.+++. +.+|++++.|+.+
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~ 152 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTT-------------------------RRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI 152 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEE-------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSCE
T ss_pred CEEEEEcccccceEEeeccccee-------------------------eeecCCCCceeEEEEeec-CccceeecCCCeE
Confidence 89999999999999998876421 001123456778888887 6899999999999
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC--CEEEEEeCCCeEEEEECCCC
Q 004293 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg--~~l~~~s~d~~i~iwd~~~~ 311 (763)
++||+....... ....+|.. .+..++|++++ .++++++.|+.|++||+.++
T Consensus 153 ~~~d~~~~~~~~-------------------~~~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~ 205 (340)
T 4aow_A 153 KLWNTLGVCKYT-------------------VQDESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205 (340)
T ss_dssp EEECTTSCEEEE-------------------ECSSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTT
T ss_pred EEEEeCCCceEE-------------------EEeccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCC
Confidence 999987543211 11133444 59999999865 56888999999999998773
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-30 Score=280.35 Aligned_cols=199 Identities=15% Similarity=0.174 Sum_probs=144.0
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.-...|.+|+|+|||++|||++.|++|+ |...++.+ .+|...|++++|+|+ | .++.+.+|+.+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~- 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPL--E-------FENKLDFELAQQ- 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECC--C-------CCCTTTTSCCCS-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee----cCCCccEEEEEECCC--C-------CcceEEEEeCCC-
Confidence 3457899999999999999999999999 76665433 689999999999999 5 466665555442
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
. ....+ .|...|.+++|+| ++.+|++++.||.|++||... .+..+. .
T Consensus 77 --~--------~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~---- 123 (588)
T 2j04_A 77 --N--------GLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-S---- 123 (588)
T ss_dssp --S--------CSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE----------------EEEECC-C----
T ss_pred --c--------eEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc----------------eeeecc-C----
Confidence 1 12222 4588999999999 678999999999999999432 111000 0
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc-cCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
..+-....+.+++|+|+ +++||+|+.||+|+|||+..+..... + ..+..+ .....||.. +|.+++
T Consensus 124 --~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~~-------i~l~ti---~~~~~gh~~-~V~sVa 189 (588)
T 2j04_A 124 --KGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPEF-------YFESSI---RLSDAGSKD-WVTHIV 189 (588)
T ss_dssp --SSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCCC-------EEEEEE---ECSCTTCCC-CEEEEE
T ss_pred --CCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCccccccc-------eeeeee---ecccccccc-cEEEEE
Confidence 00001235899999997 79999999999999999987642100 0 000110 011134554 799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 287 FSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 287 ~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|+||| |++++.|+.|++|++.+.
T Consensus 190 wSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 190 WYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EETTE--EEEEETTCCEEEECCCSS
T ss_pred EcCCc--EEEEeCCCeEEEEECCCC
Confidence 99999 889999999999998773
No 89
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.1e-30 Score=281.52 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=119.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-------CCCCEEEEEeCCCcEEEEECCC
Q 004293 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-------GNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-------~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+.+|++++.|++|+|||+..+.... ..++..+.+|.+.|++|+|+| .++++|+|++.|++|++||+++
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~-----~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIIT-----QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEE-----EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCEEEEEeCCCcEEEEECCCCccce-----eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 5689999999999999998643211 123456789999999999987 2568999999999999999987
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004293 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
...+ ..+ ..|...|.+++|+|+++.+|++|+.|++|++||+++++..........
T Consensus 176 ~~~~-----------~~~--------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 176 EGPI-----------LAG--------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp TEEE-----------EEE--------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred Ccee-----------eee--------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 6421 111 135568999999998667899999999999999998875443321111
Q ss_pred CC--Cccccc-cc--ccccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Q 004293 260 PP--PCVNYF-CP--MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 260 ~~--~~~~~~-~~--~~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.. .+.... .+ ......+|.. .+.++.|+ |+++.|++++.|+.+++||+..+
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIAS-SLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSS-SCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred cccceEEecccccceeeeecccccc-cceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 00 000000 00 0011134554 58999987 89999999999999999999874
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.3e-30 Score=279.51 Aligned_cols=264 Identities=11% Similarity=0.116 Sum_probs=193.9
Q ss_pred CCchhhhhhccccCCCcccccccccchhhhhc----cccceeeccccCceEEEEeCCC----C---CEEEEEeCCCcEEE
Q 004293 8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRR----LSQERELEGHQGCVNAISWNSK----G---SLLISGSDDTHINV 76 (763)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~gH~~~V~~l~fsp~----g---~~Lasgs~D~~v~i 76 (763)
...+..+.....+-.....+..|++|+..... .+++..+.+|...|++++|+|+ | ++|++++.|+.|++
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 33333333333334455678899999854443 3478899999999999999999 9 99999999999999
Q ss_pred EeCCCCeE-----EEEEccCC-----CCceEEEEEe----eCCCCcE-EEEEeCCCcEEEEECCC------CCCCCCCCC
Q 004293 77 WSYSSRKL-----LHSIETGH-----SANVFCTKFV----PETSDEL-VVSGAGDAEVRLFNLSR------FSGRGLDDN 135 (763)
Q Consensus 77 Wd~~~~~~-----~~~~~~~h-----~~~V~~v~~~----p~~~~~~-l~s~s~dg~I~iwd~~~------~~~~~~~~~ 135 (763)
||+.+++. +..+ ..| ...|.+++|+ |+ +.+ |++++.|+.|++||+.. .....
T Consensus 96 w~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 168 (397)
T 1sq9_A 96 YRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNSLTLN---- 168 (397)
T ss_dssp EEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTC----
T ss_pred EEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCccccccccceee----
Confidence 99998876 7777 678 5899999999 88 788 99999999999999986 32111
Q ss_pred CCCCceee-------ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004293 136 AITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 136 ~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
..+...+ ..|...|.+++|+| ++ +|++++.||.|++||+++.+.. . .+
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~--------------~--------~~ 223 (397)
T 1sq9_A 169 -WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPL--------------Y--------NF 223 (397)
T ss_dssp -CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEE--------------E--------EE
T ss_pred -ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCcee--------------E--------EE
Confidence 1112255 34899999999999 55 9999999999999999876421 1 11
Q ss_pred cCCCCC---ccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004293 209 ADPPKQ---TLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (763)
Q Consensus 209 ~~~~~~---~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i 282 (763)
.....| ...|.+++|+|+ +.+|++++.| +.|++||+++++.+..+..+..+.... .....|.. .|
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~v 294 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS-------LGEFAHSS-WV 294 (397)
T ss_dssp ECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------CCBSBSS-CE
T ss_pred eccccccccCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc-------ccccccCC-cE
Confidence 111125 678999999997 7899999999 999999999876554432110000000 00001333 69
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
++++|+|++++|++++.|+.|++||+.+++
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 999999999999999999999999998853
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.7e-29 Score=270.70 Aligned_cols=249 Identities=16% Similarity=0.199 Sum_probs=182.2
Q ss_pred Ccccccccccchhhhhccccceee-------------ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQEREL-------------EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI 88 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l-------------~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~ 88 (763)
....+..+++|+... .+....+ .+|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+
T Consensus 61 ~~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (408)
T 4a11_B 61 SGGSDGVIVLYDLEN--SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138 (408)
T ss_dssp EEETTSCEEEEECCC--CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEcCCCeEEEEECCC--CcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec
Confidence 345578899998443 3333333 36999999999999 7889999999999999999999988887
Q ss_pred ccCCCCceEEEEEeeCC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe
Q 004293 89 ETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 89 ~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
.+...+.++.|+|.. ++.++++++.|+.|++||+..+ .++..+.+|...|.+++|+|++..+|++++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~ 206 (408)
T 4a11_B 139 --NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG----------SCSHILQGHRQEILAVSWSPRYDYILATAS 206 (408)
T ss_dssp --ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------CCCEEECCCCSCEEEEEECSSCTTEEEEEE
T ss_pred --cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------ceeeeecCCCCcEEEEEECCCCCcEEEEEc
Confidence 377889999999963 1459999999999999999863 346778899999999999996666899999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004293 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.||.|++||++...........+... ...........|...|.+++|+|+ +++|++++.|+.|++||+++
T Consensus 207 ~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 207 ADSRVKLWDVRRASGCLITLDQHNGK---------KSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp TTSCEEEEETTCSSCCSEECCTTTTC---------SCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEECCCCCcccccccccccc---------cceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCC
Confidence 99999999999876331111100000 001112233567889999999997 78999999999999999998
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
++.......... ..... .+........+..+++++.|+.|++||+.++
T Consensus 277 ~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 324 (408)
T 4a11_B 277 GENTLVNYGKVC--------------NNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG 324 (408)
T ss_dssp CCBCCCCCCCCC--------------CCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred Cccceecccccc--------------ccccc--cceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence 764432211100 00011 1222333344566788888999999998774
No 92
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=9e-30 Score=267.79 Aligned_cols=227 Identities=17% Similarity=0.230 Sum_probs=183.7
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE---EEEE-ccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEE
Q 004293 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~---~~~~-~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~i 121 (763)
..+|.+.|++++|+|++++|++++ |+.|++||+.+++. +..+ ..+|...|.+++|+|+ +++|++++.|+.|++
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSI 123 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEE
Confidence 347999999999999999999999 99999999987642 2222 1278999999999999 799999999999999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004293 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
||+..+.. .....+..|...|.+++|+| ++.++++++.||.|++||+++++..
T Consensus 124 ~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~------------------ 176 (337)
T 1gxr_A 124 WDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV------------------ 176 (337)
T ss_dssp EECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE------------------
T ss_pred EECCCCCc--------ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCcee------------------
Confidence 99987431 23567788999999999999 6689999999999999999876421
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004293 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
.....|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+ .+.. .
T Consensus 177 -------~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~~~-~ 226 (337)
T 1gxr_A 177 -------RQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH---------------------DFTS-Q 226 (337)
T ss_dssp -------EEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE---------------------ECSS-C
T ss_pred -------eeeecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeee---------------------cCCC-c
Confidence 112346678999999997 689999999999999999986533221 1222 5
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004293 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
+.+++|+|++++|++++.|+.|++||+.++. ......+...+..++|+|+.
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEEEcCCccceeEEEECCCC
Confidence 9999999999999999999999999999854 33445556667778888753
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=273.67 Aligned_cols=229 Identities=15% Similarity=0.182 Sum_probs=179.1
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCC---CCEEEEEeCCCcEEEEeCCCCe-EEEEEccCCCCceEEEEEe
Q 004293 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~---g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h~~~V~~v~~~ 102 (763)
+..+++|+....+...... .+|...|++++|+|+ |.+|++|+.|+.|++||+.+++ .+..+ .+|...|.+++|.
T Consensus 43 d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~ 120 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGI 120 (357)
T ss_dssp CEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEE
T ss_pred CcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeec
Confidence 7889999854333332222 379999999999998 7999999999999999999887 77777 7999999999764
Q ss_pred ------eCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC----ceeEEE----EecCCCCEEEEEeC
Q 004293 103 ------PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR----RVKKLA----VEVGNPHVVWSASE 168 (763)
Q Consensus 103 ------p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~----~sp~~~~~l~s~s~ 168 (763)
|+ +.+|++++.|+.|++||+.... .++..+..|.+ .|.+++ |+| ++.+|++++.
T Consensus 121 ~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~ 188 (357)
T 3i2n_A 121 GGLGIGEG--APEIVTGSRDGTVKVWDPRQKD---------DPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD 188 (357)
T ss_dssp SGGGCC-C--CCEEEEEETTSCEEEECTTSCS---------SCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred cccccCCC--ccEEEEEeCCCeEEEEeCCCCC---------CcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence 56 7899999999999999998743 23555655544 899998 566 6789999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC---CCCcEEEEEeCCCcEEEEeC
Q 004293 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS---TRPHLLLVGGSDAFARLYDR 245 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p---~~~~~l~sgs~Dg~i~iwd~ 245 (763)
||.|++||+++++.. .. ..+...|.+++|+| + +.+|++++.|+.|++||+
T Consensus 189 d~~i~i~d~~~~~~~------------~~--------------~~~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 189 NGDIKLFDLRNMALR------------WE--------------TNIKNGVCSLEFDRKDIS-MNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp TSEEEEEETTTTEEE------------EE--------------EECSSCEEEEEESCSSSS-CCEEEEEESTTEEEEEEE
T ss_pred CCeEEEEECccCcee------------ee--------------cCCCCceEEEEcCCCCCC-CCEEEEECCCCeEEEEeC
Confidence 999999999886521 00 12456799999999 5 689999999999999999
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 004293 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~~ 312 (763)
++++....+. .. ...+|.. .|++++|+|+++ +|++++.|+.|++||+..+.
T Consensus 242 ~~~~~~~~~~-------------~~--~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 242 RTQHPTKGFA-------------SV--SEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEETTTEEE-------------EE--EEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred cCCCccccee-------------ee--ccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 8765433221 00 0013444 599999999998 89999999999999998853
No 94
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.8e-29 Score=266.47 Aligned_cols=217 Identities=9% Similarity=0.037 Sum_probs=141.1
Q ss_pred hccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCC
Q 004293 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~d 116 (763)
...+++..+++|.+.|++++|+|||++||+|+.|+ ++|||+.+++.+... .. ..+..+++.+. ++.+ ++++.|
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~~~d 80 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-EM--RHLSKVRMLHR--TNYVAFVTGVK 80 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-EC--SCCCEEEECTT--SSEEEEECSST
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-ec--CCeEEEEEcCC--CCEEEEEECCc
Confidence 33455667789999999999999999999998775 789999988776554 22 24778888888 4555 677888
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccce
Q 004293 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRN 195 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~ 195 (763)
++|++||+.++ +++..+. |...|.+++|++ + .++.+ .|+.|++||+.+. +....
T Consensus 81 ~~v~iWd~~~~----------~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~---------- 135 (355)
T 3vu4_A 81 EVVHIWDDVKK----------QDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITD---------- 135 (355)
T ss_dssp TEEEEEETTTT----------EEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSC----------
T ss_pred cEEEEEECCCC----------cEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEE----------
Confidence 99999999873 3355555 677999999987 3 34444 4789999999887 32200
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE--EeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccccccc
Q 004293 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s--gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (763)
.. .....+++++ .++++ |+.||.|++||++++........... .....|....
T Consensus 136 ---------------~~---~~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~----~~~~~p~~~~ 190 (355)
T 3vu4_A 136 ---------------DI---RFGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ----QKAILGKGVL 190 (355)
T ss_dssp ---------------CE---EEEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------CCEE
T ss_pred ---------------ec---cCCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccccc----ccccCcccEE
Confidence 00 0334456676 35655 68999999999997652211100000 0000000011
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 004293 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNHA 311 (763)
Q Consensus 274 ~~g~~~~~i~~v~~spdg~~l~~~s~d~~-i~iwd~~~~ 311 (763)
..+|.. .|++++|+|+|++|++++.|++ |++||+.++
T Consensus 191 ~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 191 IKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 145666 6999999999999999999998 999999874
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.3e-29 Score=271.73 Aligned_cols=209 Identities=10% Similarity=0.129 Sum_probs=163.2
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEcc------------------------------------
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIET------------------------------------ 90 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~------------------------------------ 90 (763)
..+|.+++|+|+|++|++++ ++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 35789999999999777664 6799999999988 5555421
Q ss_pred -----------------CCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCce
Q 004293 91 -----------------GHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRV 150 (763)
Q Consensus 91 -----------------~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v 150 (763)
+|...|.+++|+|+ +.+| ++++.|+.|++||+....+ ..+..+. .|...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRP 152 (450)
T ss_dssp -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCc
Confidence 23347999999999 6775 8999999999999982112 2355554 567899
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC--CC
Q 004293 151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RP 228 (763)
Q Consensus 151 ~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~ 228 (763)
.+++|+| ++.+|++++.||.|++|++.+.+.... ......+|...|++++|+|+ ++
T Consensus 153 ~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~ 210 (450)
T 2vdu_B 153 NAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGH 210 (450)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSC
T ss_pred eEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCC
Confidence 9999999 668999999999999999987753210 11122346778999999996 25
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004293 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 229 ~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
.+|++|+.|+.|++||+++++.+..+ ..+|.. .|++++|+ ++++|++++.|+.|++||+
T Consensus 211 ~~l~s~~~d~~i~vwd~~~~~~~~~~-------------------~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 211 QFIITSDRDEHIKISHYPQCFIVDKW-------------------LFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDW 269 (450)
T ss_dssp EEEEEEETTSCEEEEEESCTTCEEEE-------------------CCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred cEEEEEcCCCcEEEEECCCCceeeee-------------------ecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence 79999999999999999987543221 024544 59999999 9999999999999999999
Q ss_pred CCCC
Q 004293 309 NHAG 312 (763)
Q Consensus 309 ~~~~ 312 (763)
.+++
T Consensus 270 ~~~~ 273 (450)
T 2vdu_B 270 KTGK 273 (450)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 9864
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-29 Score=265.23 Aligned_cols=161 Identities=10% Similarity=0.092 Sum_probs=130.7
Q ss_pred EccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCC-EEEEE
Q 004293 88 IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH-VVWSA 166 (763)
Q Consensus 88 ~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~s~ 166 (763)
+..+|...|.+++|+|+ +.+|++++.|+.|++||+...... .....+.+|...|.+++|+| ++. +|+++
T Consensus 6 ~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 75 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFID-NTDLQIYVG 75 (342)
T ss_dssp CSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEE-SSSEEEEEE
T ss_pred cccCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCcc-------ccceeeeecCCceEEEEECC-CCCcEEEEE
Confidence 33689999999999999 799999999999999999863211 12455668999999999999 568 89999
Q ss_pred eCCCcEEEEEC-CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC--CccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004293 167 SEDGTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK--QTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (763)
Q Consensus 167 s~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw 243 (763)
+.||.|++||+ .+++. ..... |...|.+++|+| +.+|++++.|+.|++|
T Consensus 76 ~~dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF--------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVI 127 (342)
T ss_dssp ETTSCEEEECSSSSSSE--------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEE
T ss_pred cCCCeEEEEEeccCCce--------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEE
Confidence 99999999999 76541 11123 678899999999 5799999999999999
Q ss_pred eCCC---------CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 244 DRRM---------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 244 d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|+++ ++.+..+ . +.. .|++++|+|++ |++++.|+.|++||+.+
T Consensus 128 d~~~~~~~~~~~~~~~~~~~--------------------~-~~~-~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNSNNT--------------------K-VKN-KIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSS--------------------S-SCC-CEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred cccccccccccccCCeeeEE--------------------e-eCC-ceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 9986 4433222 1 222 59999999987 99999999999999987
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=259.67 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=131.2
Q ss_pred eCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe
Q 004293 78 SYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (763)
Q Consensus 78 d~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 156 (763)
|..++ +....+ .+|...|.+++| |+ +.+|++++.||.|++||+... .....+..|...|.+++|+
T Consensus 3 d~~~~~~~~~~l-~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~----------~~~~~~~~~~~~v~~~~~~ 68 (313)
T 3odt_A 3 DPFTGYQLSATL-KGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQ----------WLGTVVYTGQGFLNSVCYD 68 (313)
T ss_dssp --CCCCEEEEEE-CCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSS----------EEEEEEEECSSCEEEEEEE
T ss_pred CccccHHHHHHh-hCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCC----------EEEEEeecCCccEEEEEEC
Confidence 44444 556666 899999999999 87 689999999999999999752 3466778899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004293 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (763)
Q Consensus 157 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~ 236 (763)
| ++.+|++++.||.|++|++...... ..+.....|...|.+++|+ +++|++++.
T Consensus 69 ~-~~~~l~~~~~dg~i~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~ 122 (313)
T 3odt_A 69 S-EKELLLFGGKDTMINGVPLFATSGE----------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSW 122 (313)
T ss_dssp T-TTTEEEEEETTSCEEEEETTCCTTS----------------------CC-CEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred C-CCCEEEEecCCCeEEEEEeeecCCC----------------------CcccchhhcccCEEEEEec---CCEEEEEeC
Confidence 9 6789999999999999999875421 1122224577889999994 469999999
Q ss_pred CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004293 237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD 307 (763)
Q Consensus 237 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d~~i~iwd 307 (763)
|+.|++|| ..+... .+ .+|.. .|.+++|+| ++.+|++++.|+.|++||
T Consensus 123 d~~i~~~d--~~~~~~-------------~~-------~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 123 DKTAKVWK--EGSLVY-------------NL-------QAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp TSEEEEEE--TTEEEE-------------EE-------ECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEc--CCcEEE-------------ec-------ccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 99999999 222111 11 22434 599999998 999999999999999998
No 98
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.9e-29 Score=269.43 Aligned_cols=170 Identities=7% Similarity=0.025 Sum_probs=136.4
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004293 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..|..+|++++|+|+ +++|++++.|+.|++||+.... ...+..+.+|...|.+++|+| ++.+|++++.|
T Consensus 5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d 73 (372)
T 1k8k_C 5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTD 73 (372)
T ss_dssp ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTE--------EEEEEEEECCSSCEEEEEEET-TTTEEEEEETT
T ss_pred cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCc--------EEeeeeecCCCCcccEEEEeC-CCCEEEEEcCC
Confidence 458899999999999 7999999999999999998632 124778889999999999999 67899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004293 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
|.|++||+.+++.. .......+...|.+++|+|+ +++|++++.|+.|++||++...
T Consensus 74 g~i~vwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp SCEEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTT
T ss_pred CeEEEEECCCCeee-----------------------eeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCC
Confidence 99999999776411 11112346678999999997 6899999999999999998764
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.... ...+ ..+|.. .|++++|+|++++|++++.|+.|++||+...
T Consensus 130 ~~~~----------~~~~------~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 174 (372)
T 1k8k_C 130 DWWV----------CKHI------KKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 174 (372)
T ss_dssp TEEE----------EEEE------CTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred ccee----------eeee------ecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence 2110 0000 022333 5999999999999999999999999999763
No 99
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.4e-29 Score=259.98 Aligned_cols=242 Identities=15% Similarity=0.178 Sum_probs=191.2
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC 98 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~ 98 (763)
+...++.+++|+......+++.+|.+|.+.|++++|+|+ +++||||+.|++|+|||+.+++ .+..+ .+|...|.+
T Consensus 26 s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~ 104 (297)
T 2pm7_B 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNS 104 (297)
T ss_dssp EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEE
T ss_pred EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeE
Confidence 456789999998554556788999999999999999874 8999999999999999998874 45556 689999999
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC------------CCEEEEE
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN------------PHVVWSA 166 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~------------~~~l~s~ 166 (763)
++|+|+..+.+|++++.|++|++||++.... .....+.+|...|.+++|+|+. +.+|++|
T Consensus 105 v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg 176 (297)
T 2pm7_B 105 VQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176 (297)
T ss_dssp EEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------BCCEEEECCSSCEEEEEECCCC------------CCEEEEE
T ss_pred EEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEE
Confidence 9999973358999999999999999986321 1135677899999999999952 4699999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEe
Q 004293 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD 244 (763)
Q Consensus 167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd 244 (763)
+.|++|++||+++.+.. ........+|...|.+++|+|+. +.+|++++.|++|+|||
T Consensus 177 s~D~~v~lwd~~~~~~~---------------------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 177 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cCCCcEEEEEEcCCCce---------------------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 99999999999875411 00112234678899999999974 47999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
++...... ... .+...+|.. .|.+++|+|+|++|++++.|+.|++|+...
T Consensus 236 ~~~~~~~~-----------~~~----~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPW-----------KKT----LLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCC-----------EEE----ESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCcc-----------cee----eeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98642100 000 000123433 699999999999999999999999999875
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=299.78 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=109.0
Q ss_pred ceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004293 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 43 ~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
+..+++|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+ .+|...|.+++|+|+.++++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 46789999999999999999999999999999999998 45667777 7999999999999874468999999999999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC-CCEEEEEeCCCcEEEEECCCCC
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
+||+..+. ......+.+|...|.+++|+|+. +.++++++.||.|++||++...
T Consensus 81 vwd~~~~~--------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 81 IWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp EEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred EEECCCCc--------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 99998632 12467778899999999999942 7899999999999999998764
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9e-30 Score=272.85 Aligned_cols=246 Identities=11% Similarity=0.103 Sum_probs=182.5
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEccCCCCceEEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCT 99 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~---~~~~~~~~h~~~V~~v 99 (763)
....+..+++|+......+++..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++ ....+ .+|...|.++
T Consensus 28 ~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~ 106 (377)
T 3dwl_C 28 TTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFV 106 (377)
T ss_dssp CCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEE
T ss_pred EecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEE
Confidence 3456789999996554447888999999999999999999999999999999999999877 55566 6899999999
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004293 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
+|+|+ +.+|++++.|+.|++||++.... ......+.. |...|.+++|+| ++.+|++++.|+.|++||++
T Consensus 107 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 107 RWSPN--EDKFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp ECCTT--SSCCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEEC
T ss_pred EECCC--CCEEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEE
Confidence 99998 79999999999999999987431 123566777 999999999999 66899999999999999997
Q ss_pred CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC----Cccc
Q 004293 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTSC 254 (763)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~----~~~~ 254 (763)
............ +.........+... .|...|.+++|+|+ +++|++++.|+.|++||+++++. +..+
T Consensus 177 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 177 VRDVDAKPEASV-------WGSRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp CSSCC-CCCSCS-------SCSCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred ecccCCCccccc-------cccccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 654221110000 00000001122233 67889999999997 68999999999999999998764 2211
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.+|.. .|++++|+|++++|++++.++.+ +|+...
T Consensus 248 --------------------~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 248 --------------------KLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp --------------------ECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred --------------------cCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 23444 59999999999999888766666 776654
No 102
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=6.5e-30 Score=272.23 Aligned_cols=258 Identities=13% Similarity=0.129 Sum_probs=185.4
Q ss_pred ccccccchhhhhccccceeecc-----ccCceEEEEeCCC----CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceE
Q 004293 27 NHSLQMHSSLVRRLSQERELEG-----HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~g-----H~~~V~~l~fsp~----g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~ 97 (763)
+..+++|+. .+.+.+..++. |...|++++|+|+ |.+|++|+.|+.|++||+.+++.+..+ .+|...|.
T Consensus 43 ~~~v~vw~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~ 119 (366)
T 3k26_A 43 SNRVTLYEC--HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAIN 119 (366)
T ss_dssp TTEEEEEEE--CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEE
T ss_pred CCEEEEEEc--CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEE
Confidence 457888884 33444555544 5678999999998 679999999999999999999999988 78999999
Q ss_pred EEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee---ecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004293 98 CTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (763)
Q Consensus 98 ~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~ 173 (763)
+++|+| + +.+|++++.||.|++||+..+ ..+..+ .+|...|.+++|+| ++.+|++++.||.|+
T Consensus 120 ~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 120 ELKFHPRD--PNLLLSVSKDHALRLWNIQTD----------TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLK 186 (366)
T ss_dssp EEEECSSC--TTEEEEEETTSCEEEEETTTT----------EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred EEEECCCC--CCEEEEEeCCCeEEEEEeecC----------eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEE
Confidence 999999 6 799999999999999999863 234455 68999999999999 668999999999999
Q ss_pred EEECCCCCCCCCCCC---CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 004293 174 QHDFRQGSSCPPAGS---SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (763)
Q Consensus 174 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~ 250 (763)
+||+++++....... .........................|...|.+++|+ +++|++++.|+.|++||++++..
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccc
Confidence 999987643200000 000000000000000001112223477889999998 35999999999999999988754
Q ss_pred CcccCCCCC-CCCcccccccccccCCCCCccceeEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 004293 251 LTSCQKRMS-PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd--g~~l~~~s~d~~i~iwd~~~~ 311 (763)
......... ....+..+ .+|.. .|++++|+|+ +++|++++.||.|++||+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~-------~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRF-------DYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CGGGCCTTCCCEEEEEEE-------ECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred cccccccCCcchheeccc-------cccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 221111100 00011111 23444 5999999999 999999999999999999874
No 103
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=262.89 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=138.6
Q ss_pred EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004293 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (763)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 163 (763)
....+ .+|...|++++|+|+ +.+|++++.||.|++||+.++ ..+..+.+|...|.+++|+| ++.+|
T Consensus 24 ~~~~l-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l 89 (369)
T 3zwl_B 24 KAIKL-TGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG----------ERLGTLDGHTGTIWSIDVDC-FTKYC 89 (369)
T ss_dssp EEEEE-ECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred ccEEE-EEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc----------hhhhhhhhcCCcEEEEEEcC-CCCEE
Confidence 34445 799999999999999 799999999999999999863 44778889999999999999 67899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-----C
Q 004293 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----A 238 (763)
Q Consensus 164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-----g 238 (763)
++++.||.|++||+.+++.. ..+ .+...+.+++|+|+ +.+|++++.+ +
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~-----------~~~---------------~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCV-----------ATW---------------KSPVPVKRVEFSPC-GNYFLAILDNVMKNPG 142 (369)
T ss_dssp EEEETTTEEEEEETTTCCEE-----------EEE---------------ECSSCEEEEEECTT-SSEEEEEECCBTTBCC
T ss_pred EEEeCCCeEEEEECCCCcEE-----------EEe---------------ecCCCeEEEEEccC-CCEEEEecCCccCCCC
Confidence 99999999999999887522 111 13457999999997 7899999999 9
Q ss_pred cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC-ccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.|++||++.......+..... ..... + .++. ...+++++|+|++++|++++.|+.|++||+.+
T Consensus 143 ~i~~~d~~~~~~~~~~~~~~~--~~~~~-----~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 143 SINIYEIERDSATHELTKVSE--EPIHK-----I--ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp EEEEEEEEECTTTCCEEEECS--SCSEE-----E--ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEEEEEecCCccceeeccccc--ceeee-----c--cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 999999987764433211100 00000 0 1111 11599999999999999999999999999876
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=273.23 Aligned_cols=204 Identities=15% Similarity=0.202 Sum_probs=134.9
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC-CCCCCCCCceeeeccc------------CceeEEEEec
Q 004293 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-LDDNAITPSALYQCHT------------RRVKKLAVEV 157 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~h~------------~~v~~l~~sp 157 (763)
.+.+.|.+++|+|+ +.+|++|+.||.|+|||+....... .......+...+.+|. ..|.+++|+|
T Consensus 26 ~~~~~V~~v~~s~~--g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHS--GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSS--SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCC--CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 46789999999999 7999999999999999998643100 0011123467788898 8899999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCCCCCCCCCC--CCcc-----------cceEE--EecCCCceeeccCCCCCccceEEE
Q 004293 158 GNP-HVVWSASEDGTLRQHDFRQGSSCPPAGS--SHQE-----------CRNIL--LDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 158 ~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
++. .+|++++.|++|++||+........... .+.. ....+ ...............+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 533 6899999999999999976432100000 0000 00000 000000000011134688899999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC-CEEEEEeC
Q 004293 222 DISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYS 299 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg-~~l~~~s~ 299 (763)
+|+|+ +++|++| .|+.|++||+++.. .+..+. ..+..+ .+|.. .|++++|+|++ .+|++++.
T Consensus 184 ~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~--~~~~~-~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 184 SINSD-YETYLSA-DDLRINLWHLEITDRSFNIVD-----------IKPANM--EELTE-VITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEE-----------CCCSSG--GGCCC-CEEEEEECSSCTTEEEEEET
T ss_pred EEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeee-----------cccccc--cccCc-ceEEEEECCCCCcEEEEEeC
Confidence 99997 7899998 89999999998432 111100 000011 23544 59999999998 99999999
Q ss_pred CCeEEEEECCCCC
Q 004293 300 GEHVYLMDVNHAG 312 (763)
Q Consensus 300 d~~i~iwd~~~~~ 312 (763)
|+.|++||+.++.
T Consensus 248 dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 248 KGTIRLCDMRASA 260 (447)
T ss_dssp TSCEEEEETTTCS
T ss_pred CCeEEEEECcCCc
Confidence 9999999998853
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.6e-28 Score=246.99 Aligned_cols=220 Identities=16% Similarity=0.177 Sum_probs=125.8
Q ss_pred hccccceeeccccCc----eEEEEeCCCC-C--EEEEEeCCCcEEEEeCCCC---eEEEEEccCCCCceEEEEEeeCCCC
Q 004293 38 RRLSQERELEGHQGC----VNAISWNSKG-S--LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSD 107 (763)
Q Consensus 38 ~~~~~~~~l~gH~~~----V~~l~fsp~g-~--~Lasgs~D~~v~iWd~~~~---~~~~~~~~~h~~~V~~v~~~p~~~~ 107 (763)
..++++.+|+.-.+. |.++.|-..| + -++++++ ..|++|+..++ +++++. .+|..+|..+.|.|+. .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~ 99 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDV-Y 99 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTC-C
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcc-c
Confidence 345666777655443 4556665433 2 4566776 59999999998 889998 7999999999999985 4
Q ss_pred cEEEEEeCCCcE-EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEECCC-CCCC
Q 004293 108 ELVVSGAGDAEV-RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQ-GSSC 183 (763)
Q Consensus 108 ~~l~s~s~dg~I-~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~~-~~~~ 183 (763)
+++..+-..=.+ .++-+..... ...........+|...|..+ + +++++.+++ .|+.|++|++.. ++
T Consensus 100 ~~~~~~~~~~~~~~v~sla~spd----~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~-- 169 (356)
T 2w18_A 100 NLVCVALGNLEIREIRALFCSSD----DESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGG-- 169 (356)
T ss_dssp SCEEEEECSSSEEEEEEECC----------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSC--
T ss_pred ceeeeeeccccccceEEEEECCC----ccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCc--
Confidence 444443321111 1111111000 00000111112333333332 2 444444432 466677776643 22
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCC
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (763)
.+.....|...+..++|+| .++.+|++|+.|++|+|||+.+++.+.++...
T Consensus 170 -----------------------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~---- 222 (356)
T 2w18_A 170 -----------------------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID---- 222 (356)
T ss_dssp -----------------------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC----
T ss_pred -----------------------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC----
Confidence 1111223555667777777 23689999999999999999998765544210
Q ss_pred CcccccccccccCCCCCccceeEEEEcCCCCEEE------------EEeCCCeEEEEECCCC
Q 004293 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL------------LSYSGEHVYLMDVNHA 311 (763)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~------------~~s~d~~i~iwd~~~~ 311 (763)
+.+ ...+.+++|+|+|.+++ +|+.|++|++||..++
T Consensus 223 -------------~~~-v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg 270 (356)
T 2w18_A 223 -------------DSY-QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 270 (356)
T ss_dssp -------------C----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred -------------Ccc-eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence 001 12488889999999874 4666788888887764
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.3e-28 Score=263.70 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=163.0
Q ss_pred ccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
+++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+..+. .+|...|.+++|+|+ +.++++++
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~ 188 (433)
T 3bws_A 112 THRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQM 188 (433)
T ss_dssp SEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEEG
T ss_pred cceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC--CEEEEEEC
Confidence 345666666554 46699999988888888899999999999998876431 478889999999998 79999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.|+.|++||+.++ ..+..+..|...+.+++|+|++..++++++.|+.|++||+++++..
T Consensus 189 ~d~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----------- 247 (433)
T 3bws_A 189 QANAVHVFDLKTL----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----------- 247 (433)
T ss_dssp GGTEEEEEETTTC----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------
T ss_pred CCCEEEEEECCCc----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-----------
Confidence 9999999999863 3466777889999999999965445566668999999999876421
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe--------CCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs--------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
.. .. ....+.+++|+|+ +++|++++ .|+.|++||+++++.+..+
T Consensus 248 ---~~-----------~~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------------ 299 (433)
T 3bws_A 248 ---RK-----------TD-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI------------ 299 (433)
T ss_dssp ---EE-----------CC-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE------------
T ss_pred ---EE-----------ec-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec------------
Confidence 11 11 1234889999997 67888887 5899999999876432211
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCeEEEEECCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNHA 311 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~-~~s~d~~i~iwd~~~~ 311 (763)
.+.. .+.+++|+|++++|+ +++.|+.|++||+.++
T Consensus 300 ---------~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 300 ---------GPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp ---------EEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred ---------cCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 1122 488999999998665 4577999999999874
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.4e-28 Score=265.38 Aligned_cols=219 Identities=17% Similarity=0.275 Sum_probs=174.7
Q ss_pred eeeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEEccCCCCceEEEEEeeCCCCc-EEE
Q 004293 44 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS----------RKLLHSIETGHSANVFCTKFVPETSDE-LVV 111 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~----------~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~ 111 (763)
..+.+|.+.|++++|+|+ +.+||+|+.||.|+|||+.+ ...+..+ .+|...|++++|+|+ +. +|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPN--LNGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTT--STTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCC--CCCeEE
Confidence 445679999999999997 78999999999999999986 5666777 689999999999999 45 999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004293 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 191 (763)
+|+.||.|++||+....... ....+...+.+|...|.+++|+|.++.+|++++.||.|++||+++....
T Consensus 199 s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------- 267 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-------- 267 (430)
T ss_dssp EECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred EEeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence 99999999999998632110 0012245677899999999999977899999999999999999976311
Q ss_pred ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC-CCcccCCCCCCCCcccccccc
Q 004293 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 270 (763)
..+.....|...|++++|+|++..+|++|+.||.|++||+++.. .+..+
T Consensus 268 --------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---------------- 317 (430)
T 2xyi_A 268 --------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---------------- 317 (430)
T ss_dssp --------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------------
T ss_pred --------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----------------
Confidence 00111124667899999999866689999999999999999743 22111
Q ss_pred cccCCCCCccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 004293 271 HLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~spdg~-~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|.. .|++++|+|+++ +|++++.|+.|++||+...
T Consensus 318 ----~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 318 ----ESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp ----ECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred ----ecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 23444 699999999995 5888999999999999873
No 108
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.5e-28 Score=256.32 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=188.6
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC 98 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~ 98 (763)
+...++.+++|+....+..++..|++|.+.|++++|+| ++++||||+.|++|+|||+.++. .+..+ .+|...|.+
T Consensus 30 sgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~ 108 (316)
T 3bg1_A 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNS 108 (316)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCE
T ss_pred EEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEE
Confidence 45678999999854444456788999999999999986 48999999999999999999873 56666 789999999
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCC----------------CCE
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----------------PHV 162 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~----------------~~~ 162 (763)
++|+|+..+.+|++|+.|++|++||++.... ......+.+|...|.+++|+|+. +.+
T Consensus 109 v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (316)
T 3bg1_A 109 VCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR 181 (316)
T ss_dssp EEECCTTTCSCEEEECSSSCEEEEEECSSSC-------EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB
T ss_pred EEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------cceeeeeccccCCcceEEEccccCCccccccccccCccccce
Confidence 9999984468999999999999999985321 11234567899999999999952 368
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC---CcEEEEEeCCCc
Q 004293 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAF 239 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~---~~~l~sgs~Dg~ 239 (763)
|++++.|++|++||++.... ...+....+|...|.+++|+|++ +.+|++++.|++
T Consensus 182 l~sgs~D~~v~lWd~~~~~~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 182 FASGGCDNLIKLWKEEEDGQ----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp EECCBTTSBCCEEEECTTSC----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred EEEecCCCeEEEEEeCCCCc----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 99999999999999865421 01223345678899999999974 379999999999
Q ss_pred EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|++||+++..... ..... + .+|.. .|.+++|+|++++|++++.|+.|++|+...
T Consensus 240 v~iw~~~~~~~~~---------~~~~~-----~--~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNT---------WSPKL-----L--HKFND-VVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCC---------CBCCE-----E--EECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccc---------hhhhh-----h--hcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999997632100 00000 0 12333 699999999999999999999999999864
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-28 Score=257.50 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=150.4
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004293 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (763)
Q Consensus 57 ~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 136 (763)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+..... ...+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~-~~~~~~~ 113 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQI-TILDSKT 113 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEE-EEEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCce-EEeecCC
Confidence 445688999999999999999999999888873 567888888875 9999999999999877310 0000001
Q ss_pred CCCceeee-cccCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCC
Q 004293 137 ITPSALYQ-CHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (763)
Q Consensus 137 ~~~~~~~~-~h~~~v~~l~~sp--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (763)
...+..+. +|.+.|.+++|+| + +.+|++++.||+|++||+++++.. ... ...
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~------------~~~------------~~~ 168 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQY------------IVH------------SAK 168 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEE------------EEE------------CCC
T ss_pred cceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEE------------EEE------------ecC
Confidence 12233332 5678999999999 5 478999999999999999887521 000 112
Q ss_pred CccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC-cccCCCCCCCCcccccccccccCCC-CCccceeEEEEcCCC
Q 004293 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHG-RSSLHLTHVTFSPNG 291 (763)
Q Consensus 214 ~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~i~~v~~spdg 291 (763)
+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+ ..+ .+ |.. +|++++|+|+|
T Consensus 169 ~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~--------------------~~~h~~-~v~~l~fs~~g 226 (343)
T 3lrv_A 169 SDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRF--------------------PVDEEA-KIKEVKFADNG 226 (343)
T ss_dssp SSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEEC--------------------CCCTTS-CEEEEEECTTS
T ss_pred CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEE--------------------eccCCC-CEEEEEEeCCC
Confidence 3446899999997 789999999999999999987643 222 22 444 69999999999
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 004293 292 EEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+|++++ |+.|++||++++
T Consensus 227 ~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 227 YWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp SEEEEEE-SSBEEEEETTSS
T ss_pred CEEEEEe-CCeEEEEEcCCC
Confidence 9999999 559999999884
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.7e-27 Score=260.36 Aligned_cols=157 Identities=16% Similarity=0.278 Sum_probs=125.7
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004293 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.+|...|.++.| + +.+|++|+.||.|++||+.++ +....+.+|...|.+++| ++.+|++|+.|
T Consensus 130 ~~~~~~v~~~~~--d--~~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~---~~~~l~sg~~d 192 (435)
T 1p22_A 130 SETSKGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTL----------ECKRILTGHTGSVLCLQY---DERVIITGSSD 192 (435)
T ss_dssp CSSCCCEEEEEC--C--SSEEEEEESSSCEEEEESSSC----------CEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred cCCCCcEEEEEE--C--CCEEEEEeCCCeEEEEeCCCC----------eEEEEEcCCCCcEEEEEE---CCCEEEEEcCC
Confidence 467778999887 4 689999999999999999863 447788899999999998 45799999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004293 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
|.|++||+.+++.. .....|...|.+++|++ .+|++|+.|+.|++||++++.
T Consensus 193 g~i~vwd~~~~~~~-------------------------~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 193 STVRVWDVNTGEML-------------------------NTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp SCEEEEESSSCCEE-------------------------EEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSS
T ss_pred CeEEEEECCCCcEE-------------------------EEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCC
Confidence 99999999887521 12235677899999975 499999999999999998765
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
..... .. ..+|.. .|++++| ++++|++++.|+.|++||+.++
T Consensus 245 ~~~~~----------~~-------~~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 245 DITLR----------RV-------LVGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp CCEEE----------EE-------ECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred Cceee----------eE-------ecCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 33100 00 133544 5999999 7889999999999999998874
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.7e-27 Score=259.69 Aligned_cols=218 Identities=20% Similarity=0.272 Sum_probs=181.3
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
...++.+++|+ ..+.+++..+.+|.+.|.+++|+ +++|++|+.|++|++||+.+++.+..+ .+|...|.++.|+
T Consensus 135 g~~dg~i~vwd--~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~- 208 (445)
T 2ovr_B 135 GSDDNTLKVWS--AVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH- 208 (445)
T ss_dssp EETTSCEEEEE--TTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE-
T ss_pred EECCCcEEEEE--CCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec-
Confidence 44578899998 56678889999999999999997 679999999999999999999999998 7999999999996
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~ 183 (763)
+..|++|+.|+.|++||+.++ .++..+.+|...|.+++| ++.++++++.||.|++||+++++.
T Consensus 209 ---~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~- 271 (445)
T 2ovr_B 209 ---EKRVVSGSRDATLRVWDIETG----------QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC- 271 (445)
T ss_dssp ---TTEEEEEETTSEEEEEESSSC----------CEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred ---CCEEEEEeCCCEEEEEECCCC----------cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-
Confidence 358999999999999999863 347788899999999999 457899999999999999987642
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCc
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 263 (763)
+....+|...|.+++| + +.++++|+.|+.|++||+++++.+..+
T Consensus 272 ------------------------~~~~~~~~~~v~~~~~--~-~~~l~~~~~d~~i~i~d~~~~~~~~~~--------- 315 (445)
T 2ovr_B 272 ------------------------LHTLQGHTNRVYSLQF--D-GIHVVSGSLDTSIRVWDVETGNCIHTL--------- 315 (445)
T ss_dssp ------------------------EEEECCCSSCEEEEEE--C-SSEEEEEETTSCEEEEETTTCCEEEEE---------
T ss_pred ------------------------eEEecCCCCceEEEEE--C-CCEEEEEeCCCeEEEEECCCCCEEEEE---------
Confidence 1122356778999999 3 579999999999999999987644332
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004293 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~ 314 (763)
.+|.. .+.++.+ ++.+|++++.|+.|++||+.++...
T Consensus 316 -----------~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 316 -----------TGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp -----------CCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE
T ss_pred -----------cCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE
Confidence 23433 4777776 5679999999999999999886543
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.8e-27 Score=252.27 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=140.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004293 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
.++++++.|+.|++||+.+++.+..+ ..|. .+.+++|+|+ +.+| ++++.|+.|++||+.++ +.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~----------~~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATN----------NVIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT----------EEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCC----------eEEE
Confidence 46889999999999999999999888 5554 5899999999 6665 77779999999999863 3355
Q ss_pred eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004293 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
.+..+ ..+.+++|+|++..++++++.++.|++||+.+++.. . ... +...+.++
T Consensus 69 ~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~-----------~-~~~--------------~~~~~~~~ 121 (391)
T 1l0q_A 69 TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-TVK--------------TGKSPLGL 121 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-EEE--------------CSSSEEEE
T ss_pred EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE-----------E-EEe--------------CCCCcceE
Confidence 55544 489999999955445566667899999999876521 0 000 12357899
Q ss_pred EEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE-EEEeC
Q 004293 222 DISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYS 299 (763)
Q Consensus 222 ~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l-~~~s~ 299 (763)
+|+|+ +++| ++++.|+.|++||+++++.+..+ ..+. .+..++|+|++++| ++++.
T Consensus 122 ~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~--~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 122 ALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETT
T ss_pred EECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE--------------------ecCC--CcceEEECCCCCEEEEEeCC
Confidence 99998 4555 78888999999999876543222 1122 37899999999988 45667
Q ss_pred CCeEEEEECCCC
Q 004293 300 GEHVYLMDVNHA 311 (763)
Q Consensus 300 d~~i~iwd~~~~ 311 (763)
++.|++||+.++
T Consensus 179 ~~~v~~~d~~~~ 190 (391)
T 1l0q_A 179 SMSISVIDTVTN 190 (391)
T ss_dssp TTEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 999999999873
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=252.90 Aligned_cols=174 Identities=15% Similarity=0.184 Sum_probs=136.4
Q ss_pred EeCCCCeEEEEEccCCCCceEEEEEeeCC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEE
Q 004293 77 WSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155 (763)
Q Consensus 77 Wd~~~~~~~~~~~~~h~~~V~~v~~~p~~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 155 (763)
|+....+.+..+ .+|...|++++|+|+. ++.+|++|+.||.|++||+..... .....+.+|...|.+++|
T Consensus 24 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 24 DNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TIPKAQQMHTGPVLDVCW 94 (368)
T ss_dssp CSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EEEEEEEECSSCEEEEEE
T ss_pred CCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------eeEEEeccccCCEEEEEE
Confidence 445555666666 7999999999999981 138999999999999999986221 223678889999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE--eCCCCcEEEE
Q 004293 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLV 233 (763)
Q Consensus 156 sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~~l~s 233 (763)
+| ++.+|++++.||.|++||+++++.. . ...|...|.+++| +|+ +.+|++
T Consensus 95 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~------------~--------------~~~~~~~v~~~~~~~~~~-~~~l~~ 146 (368)
T 3mmy_A 95 SD-DGSKVFTASCDKTAKMWDLSSNQAI------------Q--------------IAQHDAPVKTIHWIKAPN-YSCVMT 146 (368)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTTTEEE------------E--------------EEECSSCEEEEEEEECSS-CEEEEE
T ss_pred Cc-CCCEEEEEcCCCcEEEEEcCCCCce------------e--------------eccccCceEEEEEEeCCC-CCEEEE
Confidence 99 6789999999999999999876521 0 1136678999999 786 689999
Q ss_pred EeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 234 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
++.|+.|++||+++++.+..+. .+. .+.++.+.+ ..+++++.++.+++|++...
T Consensus 147 ~~~dg~i~vwd~~~~~~~~~~~--------------------~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 147 GSWDKTLKFWDTRSSNPMMVLQ--------------------LPE--RCYCADVIY--PMAVVATAERGLIVYQLENQ 200 (368)
T ss_dssp EETTSEEEEECSSCSSCSEEEE--------------------CSS--CEEEEEEET--TEEEEEEGGGCEEEEECSSS
T ss_pred ccCCCcEEEEECCCCcEEEEEe--------------------cCC--CceEEEecC--CeeEEEeCCCcEEEEEeccc
Confidence 9999999999999876544331 122 366666654 57899999999999999874
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.4e-26 Score=249.34 Aligned_cols=223 Identities=9% Similarity=0.117 Sum_probs=168.9
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~ 101 (763)
....+..|++|+ ..+.+++..+.+|.. +.+++|+|+|++| ++++.|+.|++||+.+++.+..+ ..+. .+.+++|
T Consensus 7 s~~~d~~v~v~d--~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~v~~~~~ 81 (391)
T 1l0q_A 7 ANSESDNISVID--VTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAV 81 (391)
T ss_dssp EETTTTEEEEEE--TTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEE
T ss_pred EcCCCCEEEEEE--CCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC-CccceEE
Confidence 345567889998 456677888887754 8999999999976 67779999999999999998888 3443 8999999
Q ss_pred eeCCCCcEE-EEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004293 102 VPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 102 ~p~~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
+|+ +++| ++++.++.|++||+.++ +.+..+. +...+.+++|+|++..++++++.|+.|++||++++
T Consensus 82 spd--g~~l~~~~~~~~~v~v~d~~~~----------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 82 SPD--GKQVYVTNMASSTLSVIDTTSN----------TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp CTT--SSEEEEEETTTTEEEEEETTTT----------EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCC--CCEEEEEECCCCEEEEEECCCC----------eEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 999 6766 45556799999999863 2244444 44578999999955445578888999999999876
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCC
Q 004293 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (763)
+.. ..+ . ....+.+++|+|++..++++++.++.|++||+++++....+.
T Consensus 149 ~~~-----------~~~---~------------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----- 197 (391)
T 1l0q_A 149 AVI-----------NTV---S------------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----- 197 (391)
T ss_dssp EEE-----------EEE---E------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----
T ss_pred cEE-----------EEE---e------------cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----
Confidence 521 010 0 113468999999843344778889999999998764332210
Q ss_pred CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe---CCCeEEEEECCCC
Q 004293 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNHA 311 (763)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s---~d~~i~iwd~~~~ 311 (763)
+.. .+.+++|+|+|++|++++ .++.|++||+.++
T Consensus 198 ----------------~~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 198 ----------------VEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ----------------CSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ----------------cCC-CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 112 489999999999999988 6899999998874
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.3e-28 Score=259.88 Aligned_cols=239 Identities=9% Similarity=0.020 Sum_probs=167.8
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
.+.|+.++ + .+....+++|...|.+++|+|+| .++.+.+|+.+... .+...|...|.+++|+|
T Consensus 33 as~D~TV~--d-----~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~---~~~~~~~~~V~~vawSP 95 (588)
T 2j04_A 33 TFPDISIG--Q-----PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG---LLNSQPVCYPRVCKPSP 95 (588)
T ss_dssp CSSSEEEE--E-----ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---SSTTSCSCCEEEEEECS
T ss_pred EcCCceee--c-----ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCce---EeecCCCCcEEEEEECC
Confidence 34555555 2 44455668999999999999999 56666666543222 23236688999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC-----ceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004293 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 104 ~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
+ |.+||+++.||.|++||... .+..+. |.. .|.+++|+| ++++|++|+.||+|++||+.
T Consensus 96 d--G~~LAs~s~dg~V~iwd~~~------------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 96 I--DDWMAVLSNNGNVSVFKDNK------------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp S--SSCEEEEETTSCEEEEETTE------------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECC
T ss_pred C--CCEEEEEeCCCcEEEEeCCc------------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECC
Confidence 9 89999999999999999652 255555 665 499999999 67999999999999999998
Q ss_pred CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCC
Q 004293 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (763)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~ 258 (763)
.+...... -..+..+ -....+|...|.+++|+|+ + +++++.|++|++||+.......
T Consensus 160 ~~~l~~~~-------~i~l~ti-------~~~~~gh~~~V~sVawSPd-g--Laass~D~tVrlWd~~~~~~~~------ 216 (588)
T 2j04_A 160 KNSENTPE-------FYFESSI-------RLSDAGSKDWVTHIVWYED-V--LVAALSNNSVFSMTVSASSHQP------ 216 (588)
T ss_dssp CCTTTCCC-------CEEEEEE-------ECSCTTCCCCEEEEEEETT-E--EEEEETTCCEEEECCCSSSSCC------
T ss_pred CCcccccc-------ceeeeee-------ecccccccccEEEEEEcCC-c--EEEEeCCCeEEEEECCCCcccc------
Confidence 86421000 0001100 0012356789999999997 4 8899999999999998754210
Q ss_pred CCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeee--ccC
Q 004293 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF--TPT 332 (763)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~p~ 332 (763)
....+ . .+|.. .|.+|+|+ |..|++++ ++.|++||+.++.......++...+..++| +|+
T Consensus 217 ----~~~tL-----~-~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 217 ----VSRMI-----Q-NASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE 278 (588)
T ss_dssp ----CEEEE-----E-CCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred ----ceeee-----c-ccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence 00001 0 13433 59999999 68888887 699999999985543444456666666666 553
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.2e-26 Score=246.19 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=78.4
Q ss_pred ceEEeeecccccceeeeeeccCCCCEEEEecCCCc-EEEEEcCcCcEEEEEe-c-CCcceEEEEeeCCCCeEEEEeCCCc
Q 004293 616 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR-WFIWEKQTGRLIKMLL-G-DEAVVNCVQCHPFDCVVATSGIDNT 692 (763)
Q Consensus 616 ~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs~Dg~-i~iWd~~tg~~~~~l~-g-H~~~V~~v~~sp~~~~laS~s~D~~ 692 (763)
.+.+.+|...++++. |+|||++|||||.|++ |+|||+.+++++..+. | |.+.|++++|+|++++|||+|.|++
T Consensus 188 ~~~~~~h~~~v~~~~----~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVR----LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp CEEECCCSSCEEEEE----ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred cEEEEccCCceEEEE----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 567889999999888 9999999999999999 9999999999999998 7 9999999999999999999999999
Q ss_pred EEEEcCCCCC
Q 004293 693 IKIWTPSASV 702 (763)
Q Consensus 693 IrvW~~~~~~ 702 (763)
|+||++..+.
T Consensus 264 v~iw~~~~~~ 273 (355)
T 3vu4_A 264 LHVFEIFNDQ 273 (355)
T ss_dssp EEEEESSCCS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 117
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-26 Score=247.00 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=196.8
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC 98 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~ 98 (763)
....+..|++|+....+.+.+..+.+|.+.|++++|+|+ +++|++|+.|+.|++||+.+++ .+..+ .+|...|.+
T Consensus 28 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~ 106 (379)
T 3jrp_A 28 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNS 106 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEE
T ss_pred EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEE
Confidence 345678899999665577888999999999999999987 9999999999999999999987 66666 689999999
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC------------CCCEEEEE
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSA 166 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~------------~~~~l~s~ 166 (763)
++|+|+..+.+|++++.|+.|++||+..... .....+..|...|.+++|+|. ++.+|+++
T Consensus 107 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp EEECCGGGCSEEEEEETTSEEEEEECCTTSC--------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred EEeCCCCCCCEEEEecCCCcEEEEecCCCCc--------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 9999983348999999999999999987432 224567789999999999995 47899999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEe
Q 004293 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD 244 (763)
Q Consensus 167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd 244 (763)
+.||.|++||++..... ...+.....|...|.+++|+|++ +.+|++++.|+.|++||
T Consensus 179 ~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 179 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred eCCCeEEEEEecCCCcc---------------------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 99999999999876421 01122234577889999999974 68999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
++++...... . ......+.. .|++++|+|+|++|++++.||.|++|++....
T Consensus 238 ~~~~~~~~~~----------~-----~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 238 QDNEQGPWKK----------T-----LLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ESSTTSCCEE----------E-----ESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCCCcccee----------e-----eeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9976421100 0 001122333 69999999999999999999999999998643
No 118
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=4.9e-27 Score=250.00 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=163.4
Q ss_pred cccCceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004293 48 GHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
.+...+++++|||||++||++ +.|++|+|||+.+++++..+ .|...|.+++|+|+ +++|++++.+ .+++|+..
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~ 205 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTD--GKVVAYITGS-SLEVISTV 205 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTT--SSEEEEECSS-CEEEEETT
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccC--CceEEeccce-eEEEEEec
Confidence 345679999999999998755 47899999999999999887 47788999999999 7999999855 56666666
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC----cEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004293 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
++.. ........|...|.+++|+| ++.++++++.|+ .+++||+...... .
T Consensus 206 ~~~~--------~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------~---- 259 (365)
T 4h5i_A 206 TGSC--------IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------V---- 259 (365)
T ss_dssp TCCE--------EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------E----
T ss_pred cCcc--------eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------c----
Confidence 5321 11234567889999999999 668888988887 5888887765311 0
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004293 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
.......+|...|++++|+|+ +++||+|+.|++|+|||+++++.+..+ ..+|.. .
T Consensus 260 ----~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~-------------------~~gH~~-~ 314 (365)
T 4h5i_A 260 ----LRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIF-------------------KQAHSF-A 314 (365)
T ss_dssp ----EEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEE-------------------TTSSSS-C
T ss_pred ----eeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEe-------------------cCcccC-C
Confidence 011122356778999999997 789999999999999999987644322 145666 6
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
|++|+|+|||++|++++.|++|+||++...
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999763
No 119
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=1.5e-26 Score=250.27 Aligned_cols=256 Identities=16% Similarity=0.219 Sum_probs=198.2
Q ss_pred cccccccccchhhhh-c-cccceeeccccCceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEEccCCC
Q 004293 24 PDVNHSLQMHSSLVR-R-LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHS 93 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~-~-~~~~~~l~gH~~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~-------~~~~~~~~~h~ 93 (763)
...+..|.+|+.... + .+.+..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++ +.+..+ .+|.
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~ 131 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHT 131 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCC
Confidence 345678888874221 1 145667899999999999999 9999999999999999999987 556677 7899
Q ss_pred CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCc
Q 004293 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~ 171 (763)
..|.+++|+|++ ..+|++++.|+.|++||+.++ .++..+ .+|...|.+++|+| ++.+|++++.||.
T Consensus 132 ~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 199 (402)
T 2aq5_A 132 KRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKR 199 (402)
T ss_dssp SCEEEEEECSSB-TTEEEEEETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSE
T ss_pred CeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECC-CCCEEEEEecCCc
Confidence 999999999993 379999999999999999863 336667 78999999999999 6689999999999
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCcc-ceEEEEEeCCCCcEEEEE---eCCCcEEEEeCCC
Q 004293 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRM 247 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~~l~sg---s~Dg~i~iwd~~~ 247 (763)
|++||+++++.. ..+. ..|.. .+.+++|+|+ +.+|++| +.|+.|++||+++
T Consensus 200 i~iwd~~~~~~~--------------~~~~----------~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 200 VRVIEPRKGTVV--------------AEKD----------RPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp EEEEETTTTEEE--------------EEEE----------CSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTB
T ss_pred EEEEeCCCCcee--------------eeec----------cCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCcc
Confidence 999999886521 1000 12333 3789999997 7899998 7999999999997
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCc-cce--EeecCCC
Q 004293 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG-RAM--RYTVGDA 323 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~-~~~--~~~~~~~ 323 (763)
+..... .. ...+.. .|.+++|+|++++|++++ .|+.|++||+.++.. ... .+.+...
T Consensus 255 ~~~~~~------------~~------~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 255 LEEPLS------------LQ------ELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp CSSCSE------------EE------ECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred ccCCce------------EE------eccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 653110 00 011222 599999999999997655 699999999998663 222 2334578
Q ss_pred CeeeeeccCCCCc
Q 004293 324 SKIMSFTPTLNGL 336 (763)
Q Consensus 324 ~~~~~~~p~~~~~ 336 (763)
+..++|+|+...+
T Consensus 316 v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 316 QRGMGYMPKRGLE 328 (402)
T ss_dssp CSEEEECCGGGSC
T ss_pred ccceEEecccccc
Confidence 8899999975543
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.2e-26 Score=249.85 Aligned_cols=248 Identities=12% Similarity=0.033 Sum_probs=149.6
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEE----EccCCCCceEEEEEee--------CCCCcEEEEEeCC
Q 004293 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVP--------ETSDELVVSGAGD 116 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~----~~~~h~~~V~~v~~~p--------~~~~~~l~s~s~d 116 (763)
|...+....+++++.+||+|+.|++|+|||..++..... .+.+|.+.|++++|+| + +++|+||+.|
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D 165 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDD 165 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETT
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECC
Confidence 333344444455677899999999999999998865432 1368999999999998 5 6899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004293 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
++|+|||+... .++..+..|...|.+++|+|+++.+|++++.||+|++||+++++...............
T Consensus 166 ~tv~~Wd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 166 CTLIIWRLTDE----------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp SEEEEEEEETT----------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CeEEEEECCCC----------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 99999999763 33566778999999999999777799999999999999999887542221111111111
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004293 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
................+|...+.++.|.+.++..|++++.|+.+++||+..++....+.........+. +.+.......
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 314 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN-LLPNVQGISL 314 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C-CSCSEEEECS
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE-Eccccccccc
Confidence 111111111122233467778899999854588999999999999999998765544322111100110 1110000011
Q ss_pred CCccceeEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 004293 277 RSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 277 ~~~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+ . ....+.|+| ++.++++|+.|+.|++||+.++
T Consensus 315 ~-~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 315 F-P-SLLGACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp S-C-CSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred c-C-cceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 1 1 133344554 4445667778999999998874
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1.2e-25 Score=237.01 Aligned_cols=265 Identities=13% Similarity=0.147 Sum_probs=190.0
Q ss_pred Ccccccccccchhhhhc--cccceeeccccCceEEEEeCC--CCCEEEEEeCCCcEEEEeCCCC---------eEEEEEc
Q 004293 23 RPDVNHSLQMHSSLVRR--LSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR---------KLLHSIE 89 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~~~l~gH~~~V~~l~fsp--~g~~Lasgs~D~~v~iWd~~~~---------~~~~~~~ 89 (763)
....+..+++|+..... .+....+.+|...|++++|+| ++++|++|+.|+.|++||+.++ +.+..+
T Consensus 28 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~- 106 (351)
T 3f3f_A 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL- 106 (351)
T ss_dssp EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-
T ss_pred EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-
Confidence 34567899999854322 256788899999999999999 6999999999999999999887 556777
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC---CCCCceeeecccCceeEEEEecC--CCCEEE
Q 004293 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN---AITPSALYQCHTRRVKKLAVEVG--NPHVVW 164 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~sp~--~~~~l~ 164 (763)
.+|...|.+++|+|+.++.+|++++.|+.|++||++.......... ..........|...+.+++|+|+ ++.+++
T Consensus 107 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 107 NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEE
T ss_pred cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEE
Confidence 7899999999999983348999999999999999987432110000 00000111268889999999995 378999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC---cEEEEEeCCCcEE
Q 004293 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFAR 241 (763)
Q Consensus 165 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~---~~l~sgs~Dg~i~ 241 (763)
+++.|+.+.+|+...++. ..+....+|...|++++|+|+++ ++|++|+.|+.|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKL-----------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp EEETTEEEEEEECTTSCE-----------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred EecCCCcEEEEccCCCce-----------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 999999998888766541 12333456788999999999742 7999999999999
Q ss_pred EEeCCCCCCCcccCCCCCCCC------c----------------ccc---cc-cccccCCCCCccceeEEEEcCCCCEEE
Q 004293 242 LYDRRMLPPLTSCQKRMSPPP------C----------------VNY---FC-PMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (763)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~------~----------------~~~---~~-~~~~~~~g~~~~~i~~v~~spdg~~l~ 295 (763)
+||++.+.............. . ... .. .......+|.. .|++++|+|++++|+
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEE
Confidence 999987543221110000000 0 000 00 00001134555 699999999999999
Q ss_pred EEeCCCeEEEEECCCCC
Q 004293 296 LSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 296 ~~s~d~~i~iwd~~~~~ 312 (763)
+++.|+.|++|++.+++
T Consensus 323 s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSN 339 (351)
T ss_dssp EEETTSCEEEEEECTTS
T ss_pred EecCCCcEEEEecCcCc
Confidence 99999999999999865
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.9e-26 Score=248.36 Aligned_cols=173 Identities=13% Similarity=0.041 Sum_probs=120.6
Q ss_pred CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC---CCCC-C-CC---------------------------------
Q 004293 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS---GRGL-D-DN--------------------------------- 135 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~---~~~~-~-~~--------------------------------- 135 (763)
.++.+++|+|+ |++|+++ .++.|++||+.++. .... . ..
T Consensus 5 ~p~~~v~~s~d--g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSRD--GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECSS--SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecCC--CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 57889999999 6766665 47899999988754 0000 0 00
Q ss_pred ---------CCCCceeeecccCceeEEEEecCCCCE-EEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEEecCCC
Q 004293 136 ---------AITPSALYQCHTRRVKKLAVEVGNPHV-VWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 136 ---------~~~~~~~~~~h~~~v~~l~~sp~~~~~-l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
...+.....+|.+.|.+++|+|++ .+ +++++.||.|++||+. +++.. ..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~~---- 145 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVL-----------KLRKR---- 145 (450)
T ss_dssp ------------------CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCE-----------EEEEE----
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCcee-----------eeeec----
Confidence 000011123466689999999954 55 5899999999999998 54421 11110
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
..+...|.+++|+|+ +.+|++|+.|+.|++|++.++..... +...+ .+|.. .|+
T Consensus 146 --------~~~~~~v~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~---------~~~~~-------~~h~~-~v~ 199 (450)
T 2vdu_B 146 --------FCFSKRPNAISIAED-DTTVIIADKFGDVYSIDINSIPEEKF---------TQEPI-------LGHVS-MLT 199 (450)
T ss_dssp --------EECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSC---------CCCCS-------EECSS-CEE
T ss_pred --------ccCCCCceEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccc---------cceee-------ecccC-ceE
Confidence 123467999999997 68999999999999999987654320 00011 23444 699
Q ss_pred EEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 004293 284 HVTFSPN---GEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 284 ~v~~spd---g~~l~~~s~d~~i~iwd~~~~ 311 (763)
+++|+|+ +++|++++.|+.|++||+.++
T Consensus 200 ~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred EEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 9999999 999999999999999998773
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-26 Score=241.79 Aligned_cols=153 Identities=6% Similarity=-0.046 Sum_probs=114.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004293 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
+.+|++|+.||.|++||+.++. .+..+. ...|.++.|+|. +++++.|++|++|+....
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~----------~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~------ 105 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSK----------TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ------ 105 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSS----------CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTE------
T ss_pred CCEEEEECCCCcEEEEECCCCc----------EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCc------
Confidence 6899999999999999998632 244444 467888899883 889999999999997652
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC--CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcc
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 264 (763)
..+++...+...... ...|...|.+++|+| + +++|++++.|+.|++||+++++.+...
T Consensus 106 --------~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~---------- 165 (343)
T 3lrv_A 106 --------ITILDSKTNKVLREI-EVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVH---------- 165 (343)
T ss_dssp --------EEEEETTTCCEEEEE-ECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEE----------
T ss_pred --------eEEeecCCcceeEEe-ecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEE----------
Confidence 233444443311111 123456899999999 7 689999999999999999987542211
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 265 ~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.++....|++++|+|+|.+|++|+.|+.|++||++++
T Consensus 166 ----------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 166 ----------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp ----------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred ----------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 1122225999999999999999999999999999884
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-25 Score=259.47 Aligned_cols=243 Identities=16% Similarity=0.178 Sum_probs=196.9
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFC 98 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~ 98 (763)
....++.|++|+....+.+.+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++ .+..+ .+|...|.+
T Consensus 26 tg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~ 104 (753)
T 3jro_A 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNS 104 (753)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEE
T ss_pred EEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEE
Confidence 355688999998665577888999999999999999988 9999999999999999999987 66666 789999999
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC------------CCCEEEEE
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSA 166 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~------------~~~~l~s~ 166 (763)
++|+|+..+.+|++|+.||.|++||+..... .....+.+|...|.+++|+|. ++.+|++|
T Consensus 105 v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg 176 (753)
T 3jro_A 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176 (753)
T ss_dssp EEECCGGGCSEEEEEETTSEEEEEECCSSSC--------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred EEECCCCCCCEEEEEeCCCcEEEEEeecCCC--------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence 9999983358999999999999999987432 224567789999999999995 46889999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEe
Q 004293 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYD 244 (763)
Q Consensus 167 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd 244 (763)
+.||.|++||++++... ...+....+|...|++++|+|++ +.+|++|+.||.|++||
T Consensus 177 s~dg~I~iwd~~~~~~~---------------------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 177 GADNLVKIWKYNSDAQT---------------------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ETTSCEEEEEEETTTTE---------------------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ECCCeEEEEeccCCccc---------------------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 99999999999876421 01122234577899999999974 68999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+++++..... . .....+|.. .|++++|+|+|++|++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~-----------~----~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKK-----------T----LLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBC-----------C----BSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCccee-----------E----EeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9976421110 0 001122433 5999999999999999999999999999853
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=2.5e-24 Score=240.38 Aligned_cols=228 Identities=11% Similarity=0.125 Sum_probs=163.7
Q ss_pred cccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeC--CCCeEEEEEccCCCCceEEEEE
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKF 101 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~ 101 (763)
...+..+.+|+ ..+.+++.++..+.. +.+++|+|+|++|++++.|++|++||+ .+++.+.++ . +...+..++|
T Consensus 155 ~~~d~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~ 229 (543)
T 1nir_A 155 LRDAGQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVES 229 (543)
T ss_dssp EGGGTEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEE
T ss_pred EcCCCeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEe
Confidence 34456788887 556677888883333 899999999999999999999999999 889988888 3 4556899999
Q ss_pred ee----CCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeec----------cc-CceeEEEEecCCCCEEEE
Q 004293 102 VP----ETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HT-RRVKKLAVEVGNPHVVWS 165 (763)
Q Consensus 102 ~p----~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~-~~v~~l~~sp~~~~~l~s 165 (763)
+| + +++|++++. +++|.+||..+. +++..+.. |. ..+..+.++|+++.++++
T Consensus 230 sp~~~~d--g~~l~v~~~~~~~v~v~D~~t~----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 230 SKFKGYE--DRYTIAGAYWPPQFAIMDGETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp CCSTTCT--TTEEEEEEEESSEEEEEETTTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCCcCCC--CCEEEEEEccCCeEEEEecccc----------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 99 8 788888874 899999998863 33444432 22 378999999988888889
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEe
Q 004293 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYD 244 (763)
Q Consensus 166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd 244 (763)
...++.|.+||+.+.+.+ . +.. + .+...+.+++|+|+ +++|++ +..+++|.+||
T Consensus 298 ~~~~g~i~vvd~~~~~~l-----------~-~~~--------i----~~~~~~~~~~~spd-g~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNL-----------T-VTS--------I----GAAPFLHDGGWDSS-HRYFMTAANNSNKVAVID 352 (543)
T ss_dssp ETTTTEEEEEECTTSSSC-----------E-EEE--------E----ECCSSCCCEEECTT-SCEEEEEEGGGTEEEEEE
T ss_pred ECCCCeEEEEEecCCCcc-----------e-eEE--------e----ccCcCccCceECCC-CCEEEEEecCCCeEEEEE
Confidence 999999999999876532 0 000 0 01234667899998 566555 45689999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCC-CCEEEEEe-CCCeEEEEECCCC
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNHA 311 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spd-g~~l~~~s-~d~~i~iwd~~~~ 311 (763)
+.+++.+..+.... ..|... ...+ ++|+ |..++++. .|++|.+||+.+.
T Consensus 353 ~~tg~l~~~i~~g~----------------~ph~g~-g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 353 SKDRRLSALVDVGK----------------TPHPGR-GANF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp TTTTEEEEEEECSS----------------SBCCTT-CEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCCeEEEeeccCC----------------CCCCCC-Cccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 99886543332100 112221 2222 5787 55555555 5899999999873
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=7.6e-25 Score=221.63 Aligned_cols=227 Identities=11% Similarity=0.050 Sum_probs=158.2
Q ss_pred ccccccchhhhh-ccccceeeccccC-------------------------ceEEEEeCCC----CCEEEEEeC------
Q 004293 27 NHSLQMHSSLVR-RLSQERELEGHQG-------------------------CVNAISWNSK----GSLLISGSD------ 70 (763)
Q Consensus 27 ~~~~~~~~~~~~-~~~~~~~l~gH~~-------------------------~V~~l~fsp~----g~~Lasgs~------ 70 (763)
...+.+|+.... .++.++++++|+. .|++|+|+|+ +.++++++.
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~ 141 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG 141 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence 466777764332 3377788888875 4566677778 777887663
Q ss_pred --------------CCcEEEEeC-CCCeEEEEEccCCCCceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004293 71 --------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 71 --------------D~~v~iWd~-~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 134 (763)
|+.|++|++ .+++.+..+ .+|...+..++|+| ++++.+|++++.|++|+|||+.++
T Consensus 142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------- 213 (356)
T 2w18_A 142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG------- 213 (356)
T ss_dssp ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-------
T ss_pred cCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-------
Confidence 788888888 447766666 57888888888888 333789999999999999999974
Q ss_pred CCCCCceeeeccc---CceeEEEEecCCCCEE------------EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 135 NAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 135 ~~~~~~~~~~~h~---~~v~~l~~sp~~~~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
+++.++.+|. ..+.+++|+| ++.++ ++|+.|++|++||..+++.. ..+
T Consensus 214 ---k~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l-----------~v~-- 276 (356)
T 2w18_A 214 ---QLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV-----------GVM-- 276 (356)
T ss_dssp ---CEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEE-----------EEE--
T ss_pred ---cEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE-----------EEE--
Confidence 3467777654 4677889999 55655 67888999999999877522 000
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
.+....+|...+.+..++ +.++++|+.|++|+|||+.+++.+.++ .+|..
T Consensus 277 -------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL--------------------~gH~~ 326 (356)
T 2w18_A 277 -------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALL--------------------PPVSD 326 (356)
T ss_dssp -------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEE--------------------CCC--
T ss_pred -------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEe--------------------cCCCC
Confidence 001112343344444554 468999999999999999998655443 34555
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004293 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
..+..++|+|||++|++|+.|++|+|||+
T Consensus 327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 34567999999999999999999999986
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=8.2e-24 Score=230.98 Aligned_cols=205 Identities=9% Similarity=0.113 Sum_probs=146.7
Q ss_pred ccCceEEEE---eCCCCCEEEEEe--------------CCC--cEEEEeCCCC--eEEEEEccCCCCceEEEEEeeCCCC
Q 004293 49 HQGCVNAIS---WNSKGSLLISGS--------------DDT--HINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSD 107 (763)
Q Consensus 49 H~~~V~~l~---fsp~g~~Lasgs--------------~D~--~v~iWd~~~~--~~~~~~~~~h~~~V~~v~~~p~~~~ 107 (763)
....+..++ |+|+++.++..+ .++ .|.+||..++ +.+..+ ..+ ..+.+++|+|+ +
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-~~~~~~~~s~~--~ 134 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-KTG-FQPKSVRFIDN--T 134 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-ECS-SCBCCCEESSS--S
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-cCC-CCceEEEEeCC--C
Confidence 455678888 999887665432 233 4444455445 555555 333 45669999996 7
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004293 108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 108 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 187 (763)
.++++++.++.|++||+.++.... ......+.+|...|.+++|+| ++.++++++.|+.|++||+++++..
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~---- 204 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVR-----LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK---- 204 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEE-----ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE----
T ss_pred eEEEEeCCCCeEEEEECCCCeEee-----ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE----
Confidence 889999999999999998643111 001114567899999999988 6789999999999999999876521
Q ss_pred CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
.....+...+.+++|+|++ .++ ++++.|+.|++||+++++.+..+
T Consensus 205 ---------------------~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~------------ 250 (433)
T 3bws_A 205 ---------------------ATVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIRKT------------ 250 (433)
T ss_dssp ---------------------EEEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEEEC------------
T ss_pred ---------------------EEEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEEEe------------
Confidence 1111345678999999984 555 56668999999999876533222
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEe--------CCCeEEEEECCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--------SGEHVYLMDVNHA 311 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--------~d~~i~iwd~~~~ 311 (763)
..+. .+.+++|+|+|++|++++ .|+.|++||+.++
T Consensus 251 --------~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 251 --------DKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp --------CCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred --------cCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 1111 489999999999999988 4889999998773
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=4e-24 Score=231.51 Aligned_cols=201 Identities=11% Similarity=0.069 Sum_probs=145.7
Q ss_pred ccCceEEEEeCCCCC-EEEEEe----CCC----cEEEEeC--CCCeEE--EEEccCCCCceEEEEEeeCC----------
Q 004293 49 HQGCVNAISWNSKGS-LLISGS----DDT----HINVWSY--SSRKLL--HSIETGHSANVFCTKFVPET---------- 105 (763)
Q Consensus 49 H~~~V~~l~fsp~g~-~Lasgs----~D~----~v~iWd~--~~~~~~--~~~~~~h~~~V~~v~~~p~~---------- 105 (763)
+...|+..+|++.|. ++++|+ .|| +|+|||+ .+++++ ..+ .+|...+..+++.+..
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 345788889988874 666876 567 8999999 888877 335 6888888887777510
Q ss_pred --CCcEEEEEeCC------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---cEEE
Q 004293 106 --SDELVVSGAGD------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQ 174 (763)
Q Consensus 106 --~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---~i~i 174 (763)
.+..++.++.+ +.|++||+.. .....+.+|...+.+++|+| +++.|++++.++ .|++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----------~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-----------YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-----------CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-----------CCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEE
Confidence 02455555544 7999999974 22567778999999999999 668888888875 9999
Q ss_pred EECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEE-EEeCCCc--EEEEeCCCCCCC
Q 004293 175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAF--ARLYDRRMLPPL 251 (763)
Q Consensus 175 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~-sgs~Dg~--i~iwd~~~~~~~ 251 (763)
||+.+++.. .+ ..+...+.+++|+|+ +++|+ +++.|+. |++||+.+++..
T Consensus 208 ~d~~tg~~~------------~l--------------~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~~ 260 (415)
T 2hqs_A 208 QTLANGAVR------------QV--------------ASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQIR 260 (415)
T ss_dssp EETTTCCEE------------EE--------------ECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred EECCCCcEE------------Ee--------------ecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCEE
Confidence 999887521 11 123456889999998 56666 6766655 999999876421
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004293 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHA 311 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~--~i~iwd~~~~ 311 (763)
.+ .++.. .+.+++|+|||++|+.++. ++ .|++||+.++
T Consensus 261 -~l--------------------~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 261 -QV--------------------TDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp -EC--------------------CCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred -eC--------------------cCCCC-cccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 11 12332 5899999999999998886 44 6777787663
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.9e-23 Score=226.09 Aligned_cols=222 Identities=9% Similarity=0.038 Sum_probs=162.0
Q ss_pred cccccccchhhhhccccc--eeeccccCceEEEEeCC--------------CCCEEEEEeCC------CcEEEEeCCCCe
Q 004293 26 VNHSLQMHSSLVRRLSQE--RELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRK 83 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~--~~l~gH~~~V~~l~fsp--------------~g~~Lasgs~D------~~v~iWd~~~~~ 83 (763)
.+..+++|+....+.+++ ..+.+|...+..+++++ .+..|+.++.+ +.|++||+..+
T Consensus 91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~- 169 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY- 169 (415)
T ss_dssp EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence 444889998511333444 66899999999888875 26667766654 79999999754
Q ss_pred EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004293 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
....+ .+|...|.+++|+|+ ++.|++++.++ .|++||+.++. ...+..|...+.+++|+|++.
T Consensus 170 ~~~~l-~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg~-----------~~~l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 170 NQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp SCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSCEEEEEECTTSS
T ss_pred CCEEE-eCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCc-----------EEEeecCCCcccCEEEcCCCC
Confidence 45556 578899999999999 79999999885 99999998642 345667888999999999543
Q ss_pred CEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-C
Q 004293 161 HVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D 237 (763)
Q Consensus 161 ~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-D 237 (763)
.++++++.++. |++||+.+++.. ....+...+.+++|+|+ +++|++++. +
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~spd-g~~l~~~s~~~ 288 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQIR--------------------------QVTDGRSNNTEPTWFPD-SQNLAFTSDQA 288 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEE--------------------------ECCCCSSCEEEEEECTT-SSEEEEEECTT
T ss_pred EEEEEEecCCCceEEEEECCCCCEE--------------------------eCcCCCCcccceEECCC-CCEEEEEECCC
Confidence 34447777665 999999876411 11124457889999998 677887776 4
Q ss_pred C--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 004293 238 A--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (763)
Q Consensus 238 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d---~~i~iwd~~~~ 311 (763)
+ .|++||+.+++... + ..+.. .+.+++|+|+|++|+.++.+ ..|++||+.++
T Consensus 289 g~~~i~~~d~~~~~~~~-l--------------------~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQR-I--------------------TWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SSCEEEEEETTSSCCEE-C--------------------CCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCcEEEEEECCCCCEEE-E--------------------ecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 5 67777888754211 0 01212 48899999999999988864 58999998874
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=5.7e-23 Score=229.41 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=149.7
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC--CCCCCCCCCC
Q 004293 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD 134 (763)
Q Consensus 57 ~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~ 134 (763)
+|+|++.++++++.|++|.+||..+++++.++..++. +.+++|+|+ +++|++++.|++|++||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence 3889999999999999999999999999999844554 899999999 799999999999999999 442
Q ss_pred CCCCCceeeecccCceeEEEEec----CCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004293 135 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~sp----~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
+.+..+. +...+..++|+| ++ +++++++ .+++|.+||..+.+.. ..+ .... ....
T Consensus 213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~~i-~~~g---~~~~ 272 (543)
T 1nir_A 213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STRG---MTVD 272 (543)
T ss_dssp ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECCE---ECSS
T ss_pred ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------eee-cccC---cccC
Confidence 3355665 456689999999 66 5555665 5899999998876532 111 1000 0000
Q ss_pred CCCCC-ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004293 210 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 210 ~~~~~-~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
....| ...+.++.++|+++.++++...++.|.+||..+.+.+.. ... .+. ..+..++|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-----------~~i--------~~~-~~~~~~~~s 332 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-----------TSI--------GAA-PFLHDGGWD 332 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-----------EEE--------ECC-SSCCCEEEC
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-----------EEe--------ccC-cCccCceEC
Confidence 00001 226889999998777888888999999999987643210 000 011 137789999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCC
Q 004293 289 PNGEEVLLSY-SGEHVYLMDVNHA 311 (763)
Q Consensus 289 pdg~~l~~~s-~d~~i~iwd~~~~ 311 (763)
|+|++|++++ .+++|.+||+.++
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CCCCEEEEEecCCCeEEEEECCCC
Confidence 9999887665 4899999999885
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=2.7e-21 Score=226.37 Aligned_cols=218 Identities=8% Similarity=0.014 Sum_probs=149.3
Q ss_pred cCceEEEEeCCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEEccCCCC------------------------ceEEE
Q 004293 50 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHSA------------------------NVFCT 99 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~-D~-----~v~iWd~~~~~~~~~~~~~h~~------------------------~V~~v 99 (763)
...|.+++|+|||++|++++. |+ .|++||+.+++....+ ..+.. .|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 8999999999877666 33332 37899
Q ss_pred EEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004293 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (763)
Q Consensus 100 ~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~ 179 (763)
+|+|+ +++|++++. +.|++||+..+.. .....+..|...+..++|+| ++++|+.++ ++.|++||+.+
T Consensus 115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~--------~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD--AQRLLFPLG-GELYLYDLKQEGK--------AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT--SSEEEEEET-TEEEEEESSSCST--------TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC--CCEEEEEeC-CcEEEEECCCCCc--------ceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence 99999 799999886 9999999986410 01445666788899999999 667887776 46999999987
Q ss_pred CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC---------------------
Q 004293 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------------------- 238 (763)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg--------------------- 238 (763)
++.......... ...... . ..+. ......+.+++|+|+ +++|++++.|+
T Consensus 182 g~~~~~~~~~~~---~~~~g~-~---~~v~--~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 182 GRQMQLTADGST---TIGNGI-A---EFVA--DEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEECCCCCCS---SEEESC-C---CHHH--HHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CCEEEeccCCcc---ceeccc-c---ceee--eeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 652211000000 000000 0 0000 000112467999998 67888887665
Q ss_pred ------------cEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-----C
Q 004293 239 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G 300 (763)
Q Consensus 239 ------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-----d 300 (763)
.|++||+.+ ++...... . .++.. .+..++| |||++|++++. +
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~-------------~-----~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDL-------------G-----KEQDI-YLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECC-------------C-----SCSSE-EEEEEEE-EETTEEEEEEEETTSSE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecC-------------C-----CCcce-EEEEEEe-CCCCEEEEEEecccCCe
Confidence 788899887 64321100 0 11323 5999999 99999997764 5
Q ss_pred CeEEEEECCCC
Q 004293 301 EHVYLMDVNHA 311 (763)
Q Consensus 301 ~~i~iwd~~~~ 311 (763)
..|++||+.++
T Consensus 312 ~~i~~~d~~~g 322 (741)
T 2ecf_A 312 LDLVEVTLASN 322 (741)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEECCCC
Confidence 68999998875
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=6e-21 Score=231.42 Aligned_cols=272 Identities=10% Similarity=0.004 Sum_probs=175.2
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCce-----
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV----- 96 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V----- 96 (763)
..|.+|+. .. ...+.|.+|...|.+++|||||++||+++.+ ..|++||+.+++ ...+ ..|...+
T Consensus 33 ~~l~~~~~--~g-g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~ 107 (1045)
T 1k32_A 33 DDLWEHDL--KS-GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRM 107 (1045)
T ss_dssp TEEEEEET--TT-CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEE
T ss_pred CcEEEEEC--CC-CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCccccccc
Confidence 35555552 22 3356788999999999999999999988643 479999998887 4555 6788888
Q ss_pred --EEEEEeeCCCCcEEEEEeCC------CcEEEEECCCCCCCCCCCCC--------------------------------
Q 004293 97 --FCTKFVPETSDELVVSGAGD------AEVRLFNLSRFSGRGLDDNA-------------------------------- 136 (763)
Q Consensus 97 --~~v~~~p~~~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~-------------------------------- 136 (763)
.+++|+|+ ++++++++.+ ..|.+|++..+....+....
T Consensus 108 ~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~ 185 (1045)
T 1k32_A 108 FTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRG 185 (1045)
T ss_dssp CSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred ccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcC
Confidence 99999999 6777777754 35777877643211100000
Q ss_pred -------CCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc----------------
Q 004293 137 -------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC---------------- 193 (763)
Q Consensus 137 -------~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 193 (763)
......+.+|...+.++.|++ + .++++++.|+.+.+|.+............+...
T Consensus 186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~ 263 (1045)
T 1k32_A 186 KIWIEVNSGAFKKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK 263 (1045)
T ss_dssp EEEEEEETTEEEEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE
T ss_pred CEEEECCCCCeEECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe
Confidence 001223457888999999998 4 677788889999999865422111111111110
Q ss_pred --ceEEEecCCCceeeccCCCC-----------CccceEEEEEe-CCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004293 194 --RNILLDLRCGAKRSLADPPK-----------QTLSLKSCDIS-STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 194 --~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~i~~~-p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
...+++....... .... +...+.+++|+ |+ +++|++++ ++.|.+|++..+....
T Consensus 264 ~~~i~~~d~~~~~l~---~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~------- 331 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIE---KIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLK------- 331 (1045)
T ss_dssp TTEEEEECTTTCCEE---ECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEE-------
T ss_pred CCEEEEecCCceEee---eeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEE-------
Confidence 0112222111111 1111 23368899999 97 67888777 8899999987653211
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEE-EEECCCCCccceEeecCCCCeeeeeccCCCCc
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY-LMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 336 (763)
+ ..+....+..++|+ ||+.|+.++.++.+. +|++.++...... .+...+..++|+|+.+.+
T Consensus 332 ------------~--~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 332 ------------V--PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp ------------C--SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEE
T ss_pred ------------c--cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEE
Confidence 0 11222248999999 999999999988999 9999875533322 444566778888875443
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.4e-19 Score=189.51 Aligned_cols=198 Identities=13% Similarity=0.135 Sum_probs=134.0
Q ss_pred EEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCC
Q 004293 56 ISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 56 l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~ 133 (763)
..|.+++. .+++++.++.|.+||+.+++.+..+ ..+...+ +++|+|+ ++++++++. ++.|.+||+.++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~----- 73 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEP----- 73 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSS-----
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCc-----
Confidence 34556555 4778889999999999999988887 4555666 9999999 675555554 8999999998632
Q ss_pred CCCCCC-ceeeecccCceeEEEEecCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004293 134 DNAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 134 ~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
. ...+..+..+..+++|+| ++++++++..++ .|.+||+.+++.. .. ..
T Consensus 74 -----~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~-----------~~-~~---------- 125 (331)
T 3u4y_A 74 -----PKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFI-----------ST-IP---------- 125 (331)
T ss_dssp -----CEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEE-----------EE-EE----------
T ss_pred -----eeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeE-----------EE-EE----------
Confidence 2 445555666666699999 557776555443 8999999876521 00 00
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCc-EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004293 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
......+++|+|++..++++...++. |.+|++.....+.... ..... . ......++|+
T Consensus 126 ----~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------------~~~~~--~-~~~~~~~~~s 184 (331)
T 3u4y_A 126 ----IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--------------QEFIS--G-GTRPFNITFT 184 (331)
T ss_dssp ----CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------------EEEEC--S-SSSEEEEEEC
T ss_pred ----CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--------------Ccccc--C-CCCccceEEC
Confidence 12245799999984445566667688 9999998543221100 00001 1 1137899999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCC
Q 004293 289 PNGEEVLLSY-SGEHVYLMDVNHA 311 (763)
Q Consensus 289 pdg~~l~~~s-~d~~i~iwd~~~~ 311 (763)
|+|++|++++ .++.|++||+.++
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSST
T ss_pred CCCCEEEEEeCCCCeEEEEECCCC
Confidence 9999776665 5899999998874
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=3.3e-20 Score=224.96 Aligned_cols=215 Identities=11% Similarity=0.122 Sum_probs=146.1
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC------CcEEEE
Q 004293 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLF 122 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d------g~I~iw 122 (763)
+.+.+...+||| +.||.++. +.|++|++.+++.. .+ ..|...+.+++|+|+ |+.|++++.+ ..|++|
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~-~l-t~~~~~v~~~~~SPD--G~~la~~s~~~~~~~~~~i~~~ 85 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFY 85 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE-Ee-eeCCCcccCeEECCC--CCEEEEEEeeccCCCCCeEEEE
Confidence 467789999995 58888776 68999999887654 44 579999999999999 7999988643 479999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCce-------eEEEEecCCCCEEEEEeCC------CcEEEEECCCCCCCCCCCCC
Q 004293 123 NLSRFSGRGLDDNAITPSALYQCHTRRV-------KKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSS 189 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~ 189 (763)
|+..+. ...+..|...+ ..++|+|++ +++++++.+ ..|++||+..++........
T Consensus 86 d~~~g~-----------~~~lt~~~~~~~~~~~~~~~~~~SpDg-~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~ 153 (1045)
T 1k32_A 86 NGENGE-----------IKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP 153 (1045)
T ss_dssp ETTTTE-----------EEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS
T ss_pred ECCCCC-----------eEEcccCCCcccccccccccccCCCCC-EEEEEECCcCCCcccceEEEEECCCCCeEEecCCC
Confidence 987632 45667788777 899999955 587787754 35888888765422111000
Q ss_pred Cc--------------------------ccceEEEecC-CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004293 190 HQ--------------------------ECRNILLDLR-CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 190 ~~--------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
.. .....+|... .+....+ ..|...+.++.|+++ .++++++.|+.++|
T Consensus 154 ~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l 228 (1045)
T 1k32_A 154 ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTHVSSPVIVGH--RIYFITDIDGFGQI 228 (1045)
T ss_dssp CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSCCEEEEEETT--EEEEEECTTSSCEE
T ss_pred cceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCcccceEEeCC--EEEEEEeccCceEE
Confidence 00 0001111111 1111122 456778899999986 57788888999999
Q ss_pred EeCCC-CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 243 YDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 243 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.+.. +.....+ .++. .+..++|+|||++|+.+ .++.|++|++..
T Consensus 229 ~~~~~~g~~~~~l--------------------~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 229 YSTDLDGKDLRKH--------------------TSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EEEETTSCSCEEC--------------------CCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred EEEeCCCCcceEe--------------------cCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 98763 2111111 1122 25667999999988887 589999999943
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=7.7e-20 Score=192.31 Aligned_cols=195 Identities=14% Similarity=0.197 Sum_probs=128.0
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCCC
Q 004293 64 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~-~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
++++++.|+.|++||+. ++ +.+..+ .+...+.+++|+|+ +++|++++.+ +.|.+|++....+. ...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~------~~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGA------LTF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCC------EEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCc------eee
Confidence 44555789999999995 34 333333 57778999999999 7888888876 99999999732111 122
Q ss_pred ceeeecccCceeEEEEecCCCCEEE-EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004293 140 SALYQCHTRRVKKLAVEVGNPHVVW-SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (763)
Q Consensus 140 ~~~~~~h~~~v~~l~~sp~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (763)
+..+..+. .+..++|+|++ .+++ ++..++.|.+||+..+.. ...+.. + .....+
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~~--------~----~~~~~~ 131 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLP-----------VGVVDV--------V----EGLDGC 131 (343)
T ss_dssp EEEEECSS-CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEE-----------EEEEEE--------E----CCCTTB
T ss_pred ccccccCC-CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcc-----------cccccc--------c----cCCCCc
Confidence 34444333 78999999954 5554 444588999999852210 000000 0 012347
Q ss_pred EEEEEeCCCCcEEEEEe-CCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004293 219 KSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (763)
Q Consensus 219 ~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~ 296 (763)
.+++|+|+ ++++++++ .++.|++||+.+ ++... . . .... ..+....+..++|+|+|++|++
T Consensus 132 ~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~-~----------~---~~~~--~~~~~~~~~~~~~~pdg~~l~~ 194 (343)
T 1ri6_A 132 HSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVA-Q----------D---PAEV--TTVEGAGPRHMVFHPNEQYAYC 194 (343)
T ss_dssp CCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEE-E----------E---EEEE--ECSTTCCEEEEEECTTSSEEEE
T ss_pred eEEEECCC-CCEEEEecCCCCEEEEEEecCCCceee-e----------c---cccc--ccCCCCCcceEEECCCCCEEEE
Confidence 78999997 56677766 899999999986 32110 0 0 0000 0011124888999999998876
Q ss_pred Ee-CCCeEEEEECCC
Q 004293 297 SY-SGEHVYLMDVNH 310 (763)
Q Consensus 297 ~s-~d~~i~iwd~~~ 310 (763)
++ .++.|.+|++..
T Consensus 195 ~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 195 VNELNSSVDVWELKD 209 (343)
T ss_dssp EETTTTEEEEEESSC
T ss_pred EeCCCCEEEEEEecC
Confidence 66 689999999965
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.6e-20 Score=219.28 Aligned_cols=224 Identities=8% Similarity=-0.002 Sum_probs=145.4
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC---ceEEEEEeeCCCCcEEEEEeCC---------CcE
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AEV 119 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~---~V~~v~~~p~~~~~~l~s~s~d---------g~I 119 (763)
.+.+++|+|||+++++ +.|++|++||+.+++....+ ..|.. .|.+++|+|+ |++|++++.+ +.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceeeE
Confidence 4678999999998877 78999999999999887777 56654 4999999999 7999999875 778
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEe
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 199 (763)
++||+.++.. ..+.....|...+..++|+| +++.|+.++. +.|++||+.+++.......+... .++..
T Consensus 94 ~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~~~~g 161 (723)
T 1xfd_A 94 VLSKIPHGDP--------QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--VIYNG 161 (723)
T ss_dssp EEEESSSCCC--------EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--TEEEE
T ss_pred EEEECCCCce--------EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--ceECc
Confidence 8999987432 11222334556689999999 5677777765 79999999876532000000000 00000
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC----------------------------------cEEEEeC
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDR 245 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg----------------------------------~i~iwd~ 245 (763)
.. . .+.. ......+.+++|+|+ +++|++++.|+ .|++||+
T Consensus 162 ~~-~---~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 162 LS-D---WLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp EC-C---HHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred cc-c---eeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 00 0 0000 000113478999998 68888887553 6888888
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCeEEEEECCCCC
Q 004293 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG 312 (763)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----d~~i~iwd~~~~~ 312 (763)
.+++....+... ... .++ ...+..++|+|||++|++.+. +..|++||+.++.
T Consensus 236 ~~~~~~~~l~~~------------~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 236 NGPTHDLEMMPP------------DDP--RMR-EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp SSSCCCEECCCC------------CCG--GGS-SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred CCCceeEEeeCC------------ccC--CCc-cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 766532221100 000 011 225899999999998877653 3579999988753
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=7e-20 Score=187.86 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=125.5
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC-CCCCCCCCCCCCCceeeec
Q 004293 67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC 145 (763)
Q Consensus 67 sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~ 145 (763)
+++.|++|++||+.+++..... .|...|.+++|+|+ +++|++++ ++.|++||+.. +.. ......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~----------~~~~~~ 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP----------EKVDTG 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC----------EECCCT
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc----------eEeccc
Confidence 4567899999999998876444 68889999999999 78999887 78999999986 431 333334
Q ss_pred c-cCceeEEEEecCCCCEEEEEe--CCCcEEEEECC--CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEE
Q 004293 146 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (763)
Q Consensus 146 h-~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 220 (763)
+ ...+.+++|+| ++.+|++++ .++.+.+|.+. .++. ..+. ....+..
T Consensus 82 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~-----------------------~~~~----~~~~~~~ 133 (297)
T 2ojh_A 82 FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTP-----------------------RLMT----KNLPSYW 133 (297)
T ss_dssp TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCC-----------------------EECC----SSSSEEE
T ss_pred cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCce-----------------------EEee----cCCCccc
Confidence 4 46789999999 567888887 34556666553 3321 0111 1123788
Q ss_pred EEEeCCCCcEEE-EEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 004293 221 CDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 221 i~~~p~~~~~l~-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
++|+|+ +++|+ +++.++.++||+++..... ...+ ..+.. .+.+++|+|+|++|+.++.
T Consensus 134 ~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~------------~~~~-------~~~~~-~~~~~~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 134 HGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGV------------ETRL-------THGEG-RNDGPDYSPDGRWIYFNSS 192 (297)
T ss_dssp EEECTT-SSEEEEEEEETTEEEEEEEETTTCC------------EEEC-------CCSSS-CEEEEEECTTSSEEEEEEC
T ss_pred eEECCC-CCEEEEEECCCCceEEEEEECCCCc------------ceEc-------ccCCC-ccccceECCCCCEEEEEec
Confidence 999998 45555 7889999999996532100 0000 11222 5899999999998887774
Q ss_pred -CCeEEEEECCC
Q 004293 300 -GEHVYLMDVNH 310 (763)
Q Consensus 300 -d~~i~iwd~~~ 310 (763)
++.+++|++..
T Consensus 193 ~~~~~~i~~~~~ 204 (297)
T 2ojh_A 193 RTGQMQIWRVRV 204 (297)
T ss_dssp TTSSCEEEEEET
T ss_pred CCCCccEEEECC
Confidence 88999998763
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=7.5e-20 Score=212.87 Aligned_cols=201 Identities=12% Similarity=-0.012 Sum_probs=139.3
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCC----
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR---- 126 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~---- 126 (763)
..|.+++|+|| +.|+.+. |+.|++||+.+++..... .+...+.+++|+|+ |+.|+++ .|+.|++||+..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 6555554 489999999998765544 56677899999999 7888885 689999999986
Q ss_pred -CCCCCCCCCCCCCceeeeccc--------------CceeEEEEecCCCCEEEEEe------------------------
Q 004293 127 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSAS------------------------ 167 (763)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~sp~~~~~l~s~s------------------------ 167 (763)
+.. ......+. ..+.++.|+| ++++|++++
T Consensus 155 ~g~~----------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 155 MSRA----------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CCCC----------EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred CCCc----------EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 332 11111122 2358999999 567777776
Q ss_pred ---------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004293 168 ---------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (763)
Q Consensus 168 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg 238 (763)
.+..|++||+.+++ ...+.....+...+.+++|+|+ +++|++++.++
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~ 279 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR 279 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence 23457777766543 2222222245567899999997 68888887775
Q ss_pred -----cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC--CCCEEEEEeCCCeEEEEECC
Q 004293 239 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 239 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp--dg~~l~~~s~d~~i~iwd~~ 309 (763)
.|++||+.+++....+. .... ..... .+..++|+| ||++|+++..|+.++||.+.
T Consensus 280 ~~~~~~v~~~d~~~g~~~~~~~-------------~~~~--~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVRTLF-------------VETD--KHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp TSCEEEEEEEETTTCCEEEEEE-------------EEEC--SSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CCCeeEEEEEECCCCceeeEEE-------------EccC--CCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 89999998873221110 0000 00000 246789999 99999989889999999876
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=8.3e-19 Score=185.31 Aligned_cols=206 Identities=9% Similarity=0.077 Sum_probs=146.8
Q ss_pred ccCceEEEEeCCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEE
Q 004293 49 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR 120 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~-------D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~ 120 (763)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+. ....+.+++|+|+ ++ ++++...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d--g~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT--TQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT--TTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC--CCEEEEEecCCCEEE
Confidence 4467889999999998888774 5689999999999888873 2345788999999 56 555666689999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccC---------ceeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCC
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH 190 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~ 190 (763)
+||..+++ .+..+..+.. .+.+++|+|++..++++. +.++.|.+||+.+++..
T Consensus 115 ~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~------- 177 (353)
T 3vgz_A 115 AIDAKTGE----------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK------- 177 (353)
T ss_dssp EEETTTCC----------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred EEeCCCCe----------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence 99998642 2344443322 278899999554444444 35788999999876521
Q ss_pred cccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004293 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (763)
..+ +.+...+.+++|+|+ ++++++++.++.|.+||+.+++.+..+...
T Consensus 178 -------~~~-----------~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------- 225 (353)
T 3vgz_A 178 -------TAI-----------QNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL------------- 225 (353)
T ss_dssp -------EEE-----------CCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-------------
T ss_pred -------EEe-----------cCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-------------
Confidence 100 111223667899997 678999999999999999987644322110
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 004293 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~ 311 (763)
..++.. .+..++|+|+|++|++++. ++.|.+||+.++
T Consensus 226 ---~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 226 ---DDGKEH-FFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp ---CSSSCC-CEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ---CCCCCc-ccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 011222 4888999999998887776 599999999774
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=9.9e-20 Score=190.92 Aligned_cols=147 Identities=6% Similarity=-0.029 Sum_probs=105.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCCCCcE-EEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004293 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
++|++++.++.|.+||+.+++.+..+..++.. .+.+++|+|+ ++. ++++..++.|.+||+.++. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~~----------~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTGE----------TL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTCC----------EE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCCC----------eE
Confidence 47899999999999999999988887434322 4889999999 554 5666678999999998632 23
Q ss_pred eeeec-----ccCceeEEEEecCCCCEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 141 ALYQC-----HTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 141 ~~~~~-----h~~~v~~l~~sp~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
..+.. |...+..++|+| ++.++++++ .++.|.+||+.+++.. ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------------~~~~---- 132 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR------------KAFE---- 132 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE------------EEEE----
T ss_pred eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE------------EEEe----
Confidence 33321 123678899999 556666665 5799999999776421 0000
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
....+.+++|+|+ +++|+++ ++.|++||+.+++..
T Consensus 133 ----------~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 133 ----------APRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTLV 167 (337)
T ss_dssp ----------CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEEE
T ss_pred ----------CCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcEe
Confidence 0123567889997 5667766 689999999987543
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=6.3e-20 Score=214.76 Aligned_cols=201 Identities=10% Similarity=0.020 Sum_probs=139.3
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
.|.+++|||||++|++++. +.|++||+.++. .+..+ ..|...+.+++|+|+ |++|++++ ++.|++||+..+..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCCE
Confidence 3899999999999999887 899999999872 33345 577888999999999 79999887 56999999986321
Q ss_pred CCCCCCCCCCceeeecccC----------------ceeEEEEecCCCCEEEEEeCCC-----------------------
Q 004293 130 RGLDDNAITPSALYQCHTR----------------RVKKLAVEVGNPHVVWSASEDG----------------------- 170 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~----------------~v~~l~~sp~~~~~l~s~s~dg----------------------- 170 (763)
......+.. .+..++|+| ++++|++++.|+
T Consensus 185 ----------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 185 ----------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp ----------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred ----------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 111122222 257899999 556676776654
Q ss_pred ----------cEEEEECCC-CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC---
Q 004293 171 ----------TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--- 236 (763)
Q Consensus 171 ----------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~--- 236 (763)
.|++||+.+ ++. ..+.....+...+..++| |+ +++|++++.
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~ 308 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQT-----------------------QWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRD 308 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCC-----------------------EEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETT
T ss_pred CCCCCCCCeeEEEEEECCCCCce-----------------------EEecCCCCcceEEEEEEe-CC-CCEEEEEEeccc
Confidence 566666655 431 112111245678899999 97 677776653
Q ss_pred --CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 237 --DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 237 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
+..|++||+.+++....+. .+. .+.-. .+..++|+|||+++++++.|+.+.||.++.
T Consensus 309 ~~~~~i~~~d~~~g~~~~~~~--------------~~~--~~~~~-~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 309 QKKLDLVEVTLASNQQRVLAH--------------ETS--PTWVP-LHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp SSEEEEEEEETTTCCEEEEEE--------------EEC--SSCCC-CCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred CCeEEEEEEECCCCceEEEEE--------------cCC--CCcCC-cCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 5789999999875322110 000 00000 246789999999888888899888887653
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=5.1e-18 Score=179.05 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=122.0
Q ss_pred CCcEEEEeC--CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCCCceeeec
Q 004293 71 DTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (763)
Q Consensus 71 D~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 145 (763)
++.|.+|++ .+++........+...+..++|+|+ ++ |++++. ++.|.+|++..+.. ..+..+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g~~--------~~~~~~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQTA--------HKLNTVVA 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETTEE--------EEEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCCcE--------EEeeeeec
Confidence 456777665 4565443221345577889999999 67 444443 68999999965321 22444456
Q ss_pred ccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004293 146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (763)
Q Consensus 146 h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 224 (763)
+...+..++|+| ++++|++++ .++.|.+||+...... ..+........... .......+.+++|+
T Consensus 84 ~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~~~p~--~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 84 PGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGAL-----------TLTDTVQHSGHGPR--PEQDGSHIHYTDLT 149 (347)
T ss_dssp ESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCE-----------EEEEEEECCCCCSS--TTCSSCCEEEEEEC
T ss_pred CCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCe-----------eecceeecCCCCCC--ccccCCCceEEEEC
Confidence 778899999999 556666666 7899999999643211 11111100000000 11123458899999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCe
Q 004293 225 STRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEH 302 (763)
Q Consensus 225 p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~ 302 (763)
|+ ++++++...++.|++||+. +++ +... ..+ .......+..++|+|||++|+++ ..++.
T Consensus 150 pd-g~l~v~~~~~~~v~~~~~~~~g~-~~~~----------~~~-------~~~~g~~p~~~~~spdg~~l~v~~~~~~~ 210 (347)
T 3hfq_A 150 PD-NRLAVIDLGSDKVYVYNVSDAGQ-LSEQ----------SVL-------TMEAGFGPRHLVFSPDGQYAFLAGELSSQ 210 (347)
T ss_dssp TT-SCEEEEETTTTEEEEEEECTTSC-EEEE----------EEE-------ECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CC-CcEEEEeCCCCEEEEEEECCCCc-EEEe----------eeE-------EcCCCCCCceEEECCCCCEEEEEeCCCCE
Confidence 98 5577777778999999998 332 1100 000 00111137789999999977765 45899
Q ss_pred EEEEECCC
Q 004293 303 VYLMDVNH 310 (763)
Q Consensus 303 i~iwd~~~ 310 (763)
|.+|++..
T Consensus 211 v~v~~~~~ 218 (347)
T 3hfq_A 211 IASLKYDT 218 (347)
T ss_dssp EEEEEEET
T ss_pred EEEEEecC
Confidence 99999875
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=3.1e-18 Score=179.98 Aligned_cols=237 Identities=7% Similarity=0.078 Sum_probs=152.3
Q ss_pred ccccccccchhhh-hccccceeeccccCceEEEEeCCCCCEEEEEeCC-CcEEEEeCC--CCe--EEEEEccCCCCceEE
Q 004293 25 DVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANVFC 98 (763)
Q Consensus 25 ~~~~~~~~~~~~~-~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D-~~v~iWd~~--~~~--~~~~~~~~h~~~V~~ 98 (763)
..+..+++|+... .+.+.+..+ .|...+.+++|+|+|++|++++.+ +.|++|++. +++ .+..+ ..+. .+.+
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 88 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALPG-SLTH 88 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECSS-CCSE
T ss_pred CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccCC-CCcE
Confidence 4567788887422 233334443 477889999999999999888876 999999997 554 34444 3333 7899
Q ss_pred EEEeeCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CCCcEEEEE
Q 004293 99 TKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHD 176 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd 176 (763)
++|+|+ +++|++++. ++.|.+||+..+.. ......+. ....+.+++|+|+ +.++++++ .++.|++||
T Consensus 89 ~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~-~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 89 ISTDHQ--GQFVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVE-GLDGCHSANISPD-NRTLWVPALKQDRICLFT 157 (343)
T ss_dssp EEECTT--SSEEEEEETTTTEEEEEEEETTEE-------EEEEEEEC-CCTTBCCCEECTT-SSEEEEEEGGGTEEEEEE
T ss_pred EEEcCC--CCEEEEEecCCCeEEEEECCCCcc-------cccccccc-CCCCceEEEECCC-CCEEEEecCCCCEEEEEE
Confidence 999999 677766654 88999999952110 12233343 3346899999995 45555555 899999999
Q ss_pred CCC-CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCC--CCCCc
Q 004293 177 FRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM--LPPLT 252 (763)
Q Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~--~~~~~ 252 (763)
+.+ ++.. .+.. ..... .....+..++|+|+ ++++ +++..++.|++||+.. +...
T Consensus 158 ~~~~~~~~------------~~~~------~~~~~--~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~- 215 (343)
T 1ri6_A 158 VSDDGHLV------------AQDP------AEVTT--VEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIE- 215 (343)
T ss_dssp ECTTSCEE------------EEEE------EEEEC--STTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCE-
T ss_pred ecCCCcee------------eecc------ccccc--CCCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEE-
Confidence 986 3210 0000 00000 11235778999998 5655 4555889999999964 2210
Q ss_pred ccCCCCCCCCcccccccccccCCCCC-ccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004293 253 SCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~ 310 (763)
. .... .....++. ...+..++|+|+|++|+++. .++.|++|++..
T Consensus 216 ~----------~~~~---~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 216 C----------VQTL---DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp E----------EEEE---ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred E----------Eeec---cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 0 0000 00001111 11477899999999888655 699999999874
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=8e-19 Score=199.19 Aligned_cols=197 Identities=9% Similarity=0.009 Sum_probs=137.7
Q ss_pred cCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEEECC
Q 004293 50 QGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLS 125 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iwd~~ 125 (763)
..+|++++|+|||++||+++. |++++||++.+++.. .+...+...+.++.|+|+ +++++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC---eEEEEeccCCCCcceEEEEEe
Confidence 557999999999999999887 999999999766654 442334368999999987 67777775 5566776665
Q ss_pred C--CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 126 R--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 126 ~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
. ... ...+... ..+...+|+|++..++++.+.++.+.+||+.+++.. .+.
T Consensus 97 ~~~~g~----------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~l~----- 148 (582)
T 3o4h_A 97 TSRPGE----------EQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------ELA----- 148 (582)
T ss_dssp TTSTTC----------CEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------EEE-----
T ss_pred ccCCCc----------cccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------Eee-----
Confidence 3 111 1122212 234466888866555555555566669999876421 111
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
.. .. .+++|+|+ |++|+.++.+ +.|++||+.+++... + .++..
T Consensus 149 ------~~---~~--~~~~~spD-G~~la~~~~~~~~~~~i~~~d~~~g~~~~-l--------------------~~~~~ 195 (582)
T 3o4h_A 149 ------RL---PG--FGFVSDIR-GDLIAGLGFFGGGRVSLFTSNLSSGGLRV-F--------------------DSGEG 195 (582)
T ss_dssp ------EE---SS--CEEEEEEE-TTEEEEEEEEETTEEEEEEEETTTCCCEE-E--------------------CCSSC
T ss_pred ------cC---CC--ceEEECCC-CCEEEEEEEcCCCCeEEEEEcCCCCCceE-e--------------------ecCCC
Confidence 00 11 68899997 7899988877 789999998765321 1 12333
Q ss_pred cceeEEEEcCCCCEEEEEeCCC--eEEEEECCCCC
Q 004293 280 LHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHAG 312 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~--~i~iwd~~~~~ 312 (763)
.+..++|||||++|+++..++ .|++||+.++.
T Consensus 196 -~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 196 -SFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp -EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred -ccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 489999999999999887888 89999998753
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=3.7e-18 Score=178.72 Aligned_cols=229 Identities=9% Similarity=0.058 Sum_probs=160.5
Q ss_pred CcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeE-EEEEccCCCCceEEEE
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTK 100 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~-~~~~~~~h~~~V~~v~ 100 (763)
....+..|.+++ ..+.+.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+..++.+++
T Consensus 15 ~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~ 90 (331)
T 3u4y_A 15 VEQHLRRISFFS--TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVD 90 (331)
T ss_dssp EEGGGTEEEEEE--TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEE
T ss_pred EecCCCeEEEEe--CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceE
Confidence 344567888887 45556667777667777 9999999997666555 89999999999887 6666 55666666699
Q ss_pred EeeCCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-EEEEE
Q 004293 101 FVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHD 176 (763)
Q Consensus 101 ~~p~~~~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-i~iwd 176 (763)
|+|+ +++|+++..++ .|.+||+..+ +.+..+. +...+.+++|+|++..++++...++. |.+|+
T Consensus 91 ~s~d--g~~l~~~~~~~~~~~i~v~d~~~~----------~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 91 ITPD--DQFAVTVTGLNHPFNMQSYSFLKN----------KFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp ECTT--SSEEEECCCSSSSCEEEEEETTTT----------EEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred ECCC--CCEEEEecCCCCcccEEEEECCCC----------CeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 9999 78888555553 8999999863 2244444 34557899999966556667677788 99999
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcE-EEEEeCCCcEEEEeCCCCCC---Cc
Q 004293 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRRMLPP---LT 252 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~-l~sgs~Dg~i~iwd~~~~~~---~~ 252 (763)
+...... .+.. ...+ .....+..++|+|+ +++ ++++..++.|++||+.+++. +.
T Consensus 158 ~~~~g~~--------------~~~~---~~~~----~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 215 (331)
T 3u4y_A 158 IDADGVL--------------FDTG---QEFI----SGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLN 215 (331)
T ss_dssp ECTTCCE--------------EEEE---EEEE----CSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred ECCCCcE--------------eecC---Cccc----cCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceee
Confidence 9854311 1100 0000 11234689999998 564 45555789999999988764 22
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 004293 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~~ 312 (763)
.+. .. ..+..++|+|+|++|+++.. ++.|.+||+.+++
T Consensus 216 ~~~--------------------~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 216 AVG--------------------TN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EEE--------------------CS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred ecc--------------------CC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 211 01 14778999999998877664 7899999998753
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=8.6e-19 Score=203.94 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=133.2
Q ss_pred hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEccCCC-----------------CceEE
Q 004293 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVFC 98 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~-~~~~~~h~-----------------~~V~~ 98 (763)
+...+....|..+ .+..+.|. |..+++++.|+ | +||+.+++.+ ..+ ..|. ..|.+
T Consensus 14 ~~~~~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~ 86 (706)
T 2z3z_A 14 MPGGKEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFR 86 (706)
T ss_dssp ----------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEE
T ss_pred cCCcccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCcee
Confidence 3344455555554 35667888 66778888888 8 9999999873 333 2232 46999
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~ 178 (763)
++|+|+ +.++++ . ++.|++||+.++. ...+..+...+.+++|+| +++.|+++ .++.|++||+.
T Consensus 87 ~~~spd--~~~~~~-~-~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 87 TLDAGR--GLVVLF-T-QGGLVGFDMLARK-----------VTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp EEETTT--TEEEEE-E-TTEEEEEETTTTE-----------EEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECB
T ss_pred EEECCC--CeEEEE-E-CCEEEEEECCCCc-----------eEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecC
Confidence 999998 455554 3 5999999998632 344555677899999999 55777774 67999999998
Q ss_pred C-----CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe------------------
Q 004293 179 Q-----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG------------------ 235 (763)
Q Consensus 179 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs------------------ 235 (763)
+ ++.......... ....... ....+...+.+++|+|+ +++|++++
T Consensus 150 ~~~~~~g~~~~~~~~~~~---~~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTE---TLVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp CTTSCCCCCEESCSCCBT---TEEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred cccccCCCcEEeccCCCC---CeEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCC
Confidence 7 542211100000 0000000 00011223578999998 68888887
Q ss_pred ---------------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 004293 236 ---------------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (763)
Q Consensus 236 ---------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d 300 (763)
.+..|++||+.+++..... ...++.. .+..++|+|||++|++++.+
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~------------------~~~~~~~-~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ------------------TGEPKEK-FLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC------------------CCSCTTC-EEEEEEECTTSSEEEEEEEC
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeec------------------cCCCCce-eEeeEEEECCCCEEEEEEeC
Confidence 4577999999876421110 0011222 58999999999999998876
Q ss_pred C-----eEEEEECCCC
Q 004293 301 E-----HVYLMDVNHA 311 (763)
Q Consensus 301 ~-----~i~iwd~~~~ 311 (763)
+ .|++||+.++
T Consensus 279 ~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 279 RAQNECKVNAYDAETG 294 (706)
T ss_dssp TTSCEEEEEEEETTTC
T ss_pred CCCCeeEEEEEECCCC
Confidence 5 8999998875
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=7.9e-19 Score=179.98 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=175.7
Q ss_pred CCCcccccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEccCC-CCceEE
Q 004293 21 DTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANVFC 98 (763)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~-~~~~~~~~~~h-~~~V~~ 98 (763)
..+...+..|.+|+.. ..+ ...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ..+ ...|.+
T Consensus 15 ~~~~~~~~~i~~~d~~--~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~ 89 (297)
T 2ojh_A 15 GPGGSMRSSIEIFNIR--TRK-MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNND 89 (297)
T ss_dssp ---CCCCEEEEEEETT--TTE-EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSC
T ss_pred cCCCCcceeEEEEeCC--CCc-eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccc
Confidence 3345677889998843 333 335566899999999999999999987 68999999998 7766555 444 478899
Q ss_pred EEEeeCCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004293 99 TKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd 176 (763)
++|+|+ +++|++++ .++.++||.+....+ ....+..+ ..+..++|+|++..++++++.++.+++|+
T Consensus 90 ~~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 90 HGISPD--GALYAISDKVEFGKSAIYLLPSTGG---------TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp CEECTT--SSEEEEEECTTTSSCEEEEEETTCC---------CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred eEECCC--CCEEEEEEeCCCCcceEEEEECCCC---------ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEE
Confidence 999999 79999998 445666666643221 12333333 34889999995544555888999999998
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCC-CCCCccc
Q 004293 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSC 254 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~-~~~~~~~ 254 (763)
+...... . .....+...+.+++|+|+ +++|++++ .++.+++|++.. ......+
T Consensus 158 ~~~~~~~---------------------~---~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 158 MDIDSGV---------------------E---TRLTHGEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EETTTCC---------------------E---EECCCSSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred EECCCCc---------------------c---eEcccCCCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 6533210 0 011123457899999997 56666555 589999999863 2221111
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCCccceEe--ecC
Q 004293 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRY--TVG 321 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-----------~~i~iwd~~~~~~~~~~~--~~~ 321 (763)
..+.. .+..++|+|+|++|++++.+ +.|++||+.+++...... .+.
T Consensus 213 --------------------~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 271 (297)
T 2ojh_A 213 --------------------TDSAY-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ 271 (297)
T ss_dssp --------------------CCCSE-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred --------------------ecCCc-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence 11222 58999999999999988875 579999999865433332 445
Q ss_pred CCCeeeeeccCCCCccc
Q 004293 322 DASKIMSFTPTLNGLEL 338 (763)
Q Consensus 322 ~~~~~~~~~p~~~~~~~ 338 (763)
..+..++|+|+.+.+..
T Consensus 272 ~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 272 GTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp TTSCSCCBCTTSSEEEE
T ss_pred cccccceECCCCCEEEE
Confidence 67778889988765543
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=1.1e-18 Score=203.61 Aligned_cols=244 Identities=8% Similarity=0.022 Sum_probs=152.1
Q ss_pred cccccccchhhhhccccceeeccccC---ceEEEEeCCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEc--cC
Q 004293 26 VNHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIE--TG 91 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~---~V~~l~fsp~g~~Lasgs~D---------~~v~iWd~~~~~~~~~~~--~~ 91 (763)
.+..+.+|+ ..+.+....+.+|.. .|.+++|||||++||+++.+ +.|.+||+.+++. ..+. .+
T Consensus 35 ~dg~i~~~d--~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~ 111 (723)
T 1xfd_A 35 QKGTVRLWN--VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV 111 (723)
T ss_dssp SSSCEEEBC--GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC
T ss_pred CCCCEEEEE--CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcc
Confidence 456788887 455566677777765 49999999999999999875 6788999998876 3331 23
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC------------------ceeEE
Q 004293 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR------------------RVKKL 153 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l 153 (763)
|...+..++|+|+ |+.|++++. +.|++||+..+.. ......+.. .+.++
T Consensus 112 ~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~----------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 112 SNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQA----------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp CSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCC----------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred ccccccccEECCC--CCEEEEEEC-CeEEEEECCCCce----------EEEecCCCCCceECcccceeEEEEeccCcceE
Confidence 4555889999999 789999886 7999999986431 222222222 23789
Q ss_pred EEecCCCCEEEEEeCC-CcEEEEECCCCCCCCC----------CCCCCcccceEEEecCCCce-eeccCC---CCCccce
Q 004293 154 AVEVGNPHVVWSASED-GTLRQHDFRQGSSCPP----------AGSSHQECRNILLDLRCGAK-RSLADP---PKQTLSL 218 (763)
Q Consensus 154 ~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~v 218 (763)
+|+| +++.|++++.| +.+.+|++........ ...........++++..+.. ..+... ..+...+
T Consensus 179 ~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~ 257 (723)
T 1xfd_A 179 WWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (723)
T ss_dssp EECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence 9999 55777776654 4566666532211000 00000112334555544432 222111 1135678
Q ss_pred EEEEEeCCCCcEEEEEeC----CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce----eEEEEcCC
Q 004293 219 KSCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL----THVTFSPN 290 (763)
Q Consensus 219 ~~i~~~p~~~~~l~sgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i----~~v~~spd 290 (763)
.+++|+|+ +++|++.+. +..|++||+.+++....+. .+....+ ..++|+||
T Consensus 258 ~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 258 TMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHE--------------------DESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp EEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEE--------------------EECSSCCCCCCCCCEECTT
T ss_pred EEEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE--------------------eccCCEEeccCCCceEcCC
Confidence 99999997 677766653 3679999998875322110 0000112 36899999
Q ss_pred CCEEEEE--eCCC------eEEEEE
Q 004293 291 GEEVLLS--YSGE------HVYLMD 307 (763)
Q Consensus 291 g~~l~~~--s~d~------~i~iwd 307 (763)
|+.|+.. ..++ .|++||
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCeEEEEEecccCCCcceeEEEEEe
Confidence 9987764 4466 455555
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2.9e-18 Score=180.76 Aligned_cols=158 Identities=11% Similarity=0.061 Sum_probs=110.6
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcE-EEEEeCCCcEEEEECCCCCCCCCC
Q 004293 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~ 133 (763)
.+++++++.++++++.+++|.+||+.+++.+..+..+....+..++|+|+ +++ ++++..++.|.+||+.++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~~----- 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTCK----- 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTTE-----
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCCc-----
Confidence 45788899999999999999999999999888874333236789999999 564 4566678999999998632
Q ss_pred CCCCCCceeeecc------cCceeEEEEecCCCCEEEEEeCC------------CcEEEEECCCCCCCCCCCCCCcccce
Q 004293 134 DNAITPSALYQCH------TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 134 ~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
....+... ...+..++|+| +++++++++.+ +.|.+||+.+++.....
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------- 141 (349)
T 1jmx_B 77 -----NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------- 141 (349)
T ss_dssp -----EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---------
T ss_pred -----EEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee---------
Confidence 23333321 23378999999 55777777754 89999999875421000
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004293 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
... .+...+.+++|+|+ ++ +++++. .|++||+.+++.+.
T Consensus 142 ~~~--------------~~~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 142 RTF--------------PMPRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTV 180 (349)
T ss_dssp EEE--------------ECCSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEE
T ss_pred eec--------------cCCCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceec
Confidence 000 01124778899998 56 555543 49999999876443
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=1.9e-18 Score=187.43 Aligned_cols=218 Identities=11% Similarity=0.072 Sum_probs=153.6
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC----------eEEEEE----ccCCCCceEEEEEeeCCCCcEEE---
Q 004293 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHSI----ETGHSANVFCTKFVPETSDELVV--- 111 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~----------~~~~~~----~~~h~~~V~~v~~~p~~~~~~l~--- 111 (763)
....++.|++++++.+|++++.|+ ++||+.... ..+... ...+...|.+++|+|+ +++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~ 111 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM 111 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence 345689999999999999999987 899875311 011111 0245678999999999 78888
Q ss_pred -EEeCCCcEEEEECCCCCCC-CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004293 112 -SGAGDAEVRLFNLSRFSGR-GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (763)
Q Consensus 112 -s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 189 (763)
+|+.|+.|+|||+...... .........+..+.+|...|.+++|+|+++.+|++++.||+|++||++++...
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------ 185 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------ 185 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence 7889999999998753100 00000011245567799999999999976899999999999999999876311
Q ss_pred CcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccccc
Q 004293 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (763)
.....|...|.+++|+|+ +++|++|+.||.|++||++ ++....+.
T Consensus 186 -------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~-------------- 230 (434)
T 2oit_A 186 -------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIP-------------- 230 (434)
T ss_dssp -------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEEC--------------
T ss_pred -------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Cccccccc--------------
Confidence 011135678999999997 7899999999999999998 33222111
Q ss_pred ccccCC-CCCccceeEEEEcCCCCEEEEEe-CCC------eEEEEECCCC
Q 004293 270 MHLSEH-GRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA 311 (763)
Q Consensus 270 ~~~~~~-g~~~~~i~~v~~spdg~~l~~~s-~d~------~i~iwd~~~~ 311 (763)
.+.... .|. ..|.+++|++++.++++.+ .|| .+++|++...
T Consensus 231 ~~~~~~~~~~-~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHP-VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSC-EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCc-eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 011001 122 2599999999988776544 343 3899999874
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=2.9e-17 Score=176.12 Aligned_cols=212 Identities=14% Similarity=0.117 Sum_probs=141.8
Q ss_pred cccceeeccccCceEE-----EEeCCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEE
Q 004293 40 LSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~-----l~fsp~g~~Lasgs~-D~~--v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~ 111 (763)
...+..|..|...+.. .+|+|||++|+.++. ++. |.+||+.+++..... .++...+..+.|+|+ ++.|+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~l~ 96 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDALF 96 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCEEE
Confidence 4556777777766666 889999999998887 663 888899988876655 566666667889999 79999
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEE--EecCCCCEEEEE----------------------e
Q 004293 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSA----------------------S 167 (763)
Q Consensus 112 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l~s~----------------------s 167 (763)
.++.++.|++||+.++.. ...+..+...+.... ++| ++.+++.. .
T Consensus 97 ~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEE----------NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp EEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EEeCCCeEEEEECCCCcc----------eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccC
Confidence 999999999999987431 233344444454444 377 55666532 2
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeC-CCCcEEEEEeCC------CcE
Q 004293 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------AFA 240 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~sgs~D------g~i 240 (763)
.+..|.+||+.+++.. .+. .+...+..++|+| + ++.|+....+ ..|
T Consensus 166 ~~~~l~~~d~~~g~~~-----------------------~l~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 166 PCCRLMRVDLKTGEST-----------------------VIL---QENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp CCEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTE-EEEEEEEECSCTTTSSCSE
T ss_pred CcceEEEEECCCCceE-----------------------Eee---cCCccccccEECCCC-CCEEEEEEecCCCCCcceE
Confidence 3467888888776411 111 1223578899999 7 6777766653 367
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC----eEEEEECCCCC
Q 004293 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHAG 312 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~----~i~iwd~~~~~ 312 (763)
.++|+....... + . .+.....+..++|+|||+.|+..+. ++ .|++||+.+++
T Consensus 219 ~~~d~~~~~~~~-l------------------~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 219 WLINEDGTNMRK-V------------------K-THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EEEETTSCCCEE-S------------------C-CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred EEEeCCCCceEE-e------------------e-eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 888876543211 0 0 1111124788999999998866544 22 39999988753
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=4.6e-16 Score=164.99 Aligned_cols=242 Identities=6% Similarity=0.031 Sum_probs=146.2
Q ss_pred ccccccchhhhhc--cccceeeccccCceEEEEeCCCCCEEEEEeCC----CcEEEEeCCC--CeE--EEEEccCCCCce
Q 004293 27 NHSLQMHSSLVRR--LSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RKL--LHSIETGHSANV 96 (763)
Q Consensus 27 ~~~~~~~~~~~~~--~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D----~~v~iWd~~~--~~~--~~~~~~~h~~~V 96 (763)
+..|.+|....++ ++.+..+ |...+..++|+|+|++|++++.+ +.|.+|++.. ++. +..+ ..+...+
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p 102 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADP 102 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCE
T ss_pred CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCc
Confidence 4566676543333 3334444 77788899999999999999886 7999998865 442 3333 3355667
Q ss_pred EEEEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceee----------ecccCceeEEEEecCCCCEEEE
Q 004293 97 FCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALY----------QCHTRRVKKLAVEVGNPHVVWS 165 (763)
Q Consensus 97 ~~v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~l~~sp~~~~~l~s 165 (763)
..+++ + +++|++++ .++.|.+|++....... ...... ..+...+.+++|+|++..++++
T Consensus 103 ~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~ 172 (361)
T 3scy_A 103 CYLTT--N--GKNIVTANYSGGSITVFPIGQDGALL------PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD 172 (361)
T ss_dssp EEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBC------SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred EEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCc------ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence 77887 5 56666665 58899999997522110 001110 1123346889999954335555
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEe
Q 004293 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYD 244 (763)
Q Consensus 166 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd 244 (763)
...++.|.+|++....................... .....+..++|+|+ ++++++++ .++.|.+||
T Consensus 173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSD-GKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTT-SSEEEEEETTTCEEEEEE
T ss_pred eCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEE
Confidence 55689999999876531000000000000000000 11234678999998 67776666 689999999
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--CeEEEEECCC
Q 004293 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVNH 310 (763)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--~~i~iwd~~~ 310 (763)
+.++.... +... ... ..+.. ....++|+|||++|+++..+ +.|.+|++..
T Consensus 240 ~~~g~~~~-----------~~~~---~~~-~~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 240 YADGMLDE-----------IQTV---AAD-TVNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp EETTEEEE-----------EEEE---ESC-SSCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred ecCCceEE-----------eEEE---ecC-CCCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 98653110 0000 000 01111 36899999999999777654 8999999864
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=7.1e-17 Score=170.25 Aligned_cols=236 Identities=10% Similarity=0.049 Sum_probs=147.6
Q ss_pred ccccccchhhhhccccce-eeccccCceEEEEeCCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEEccCCCCceEEEE
Q 004293 27 NHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRK--LLHSIETGHSANVFCTK 100 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~-~l~gH~~~V~~l~fsp~g~~Lasgs~---D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~ 100 (763)
.+.+.+|.....+.++.. ....+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+ ..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEE
Confidence 345556654444333322 2334567788999999999 554443 6899999998776 34443 35677889999
Q ss_pred EeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeec---------ccCceeEEEEecCCCCEEEEEeCCC
Q 004293 101 FVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 101 ~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
|+|+ +++|++++ .++.|.+|++... +.. ..+..+.. +...+.+++|+|++ +++++...++
T Consensus 93 ~spd--g~~l~~~~~~~~~v~v~~~~~~-g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~ 162 (347)
T 3hfq_A 93 VDEA--RQLVYSANYHKGTAEVMKIAAD-GAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD 162 (347)
T ss_dssp EETT--TTEEEEEETTTTEEEEEEECTT-SCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred ECCC--CCEEEEEeCCCCEEEEEEeCCC-CCe------eecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence 9999 78888877 6899999999631 110 11222211 22348899999955 5777777789
Q ss_pred cEEEEECCC-CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCC-
Q 004293 171 TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM- 247 (763)
Q Consensus 171 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~- 247 (763)
.|++||+.. ++.. .+.. +.. .....+..++|+|+ ++++ +++..++.|++|++..
T Consensus 163 ~v~~~~~~~~g~~~------------~~~~--------~~~--~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 163 KVYVYNVSDAGQLS------------EQSV--------LTM--EAGFGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp EEEEEEECTTSCEE------------EEEE--------EEC--CTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEEECCCCcEE------------Eeee--------EEc--CCCCCCceEEECCC-CCEEEEEeCCCCEEEEEEecCC
Confidence 999999983 3210 0000 000 01124678999998 5644 4566789999999874
Q ss_pred -CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 004293 248 -LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (763)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~ 310 (763)
++.. . +..... ..........+..++|+|||++|+++ ..++.|.+|++..
T Consensus 220 ~g~~~-~----------~~~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 220 TGAFT-Q----------LGIVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp TTEEE-E----------EEEEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CCceE-E----------eeeeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 2210 0 000000 00000001248899999999988554 5589999999864
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=2e-16 Score=167.84 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=127.7
Q ss_pred CCCEEEEEe----CCCcEEEEeC--CCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC----CcEEEEECCCCCCC
Q 004293 61 KGSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGR 130 (763)
Q Consensus 61 ~g~~Lasgs----~D~~v~iWd~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d----g~I~iwd~~~~~~~ 130 (763)
...+++.|+ .++.|.+|.+ .+++....... +...+..++|+|+ +++|++++.+ +.|.+|++....+.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 344566664 3568888866 45654433322 6677889999999 7889988876 79999998753221
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccC
Q 004293 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (763)
. ..+.....+...+..+++ ++..++++...++.|.+|++......... .......... ...
T Consensus 89 ~------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~--------~~~~~~~g~~---~~~ 149 (361)
T 3scy_A 89 L------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA--------SDVIEFKGSG---PDK 149 (361)
T ss_dssp E------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC--------SEEEECCCCC---SCT
T ss_pred E------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc--------ceeEEccCCC---CCc
Confidence 1 223344445566777887 34334444446889999999764422111 0000000000 000
Q ss_pred CCCCccceEEEEEeCCCCcEEEE-EeCCCcEEEEeCCCCCC------CcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 211 PPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 211 ~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
...+...+.+++|+|+ ++++++ ...++.|++|++..... +.... .... .. . .....+.
T Consensus 150 ~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-------~~~~-----~~-~-~~~~~~~ 214 (361)
T 3scy_A 150 ERQTMPHLHCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-------TPEA-----FK-V-APGSGPR 214 (361)
T ss_dssp TTCSSCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-------EEEE-----EE-C-CTTCCEE
T ss_pred cccCCCcceEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-------cccc-----ee-c-CCCCCCe
Confidence 1112334688999998 565544 44589999999875431 10000 0000 00 0 1111478
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 004293 284 HVTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (763)
Q Consensus 284 ~v~~spdg~~l~~~s-~d~~i~iwd~~~~ 311 (763)
.++|+|||++|++++ .++.|.+|++.++
T Consensus 215 ~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 215 HLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp EEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 899999999888887 5899999998863
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=194.08 Aligned_cols=211 Identities=10% Similarity=0.045 Sum_probs=136.7
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCC---ceEEEEEeeCCCCcEEEEEeC---------CCcEEEE
Q 004293 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF 122 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~---~V~~v~~~p~~~~~~l~s~s~---------dg~I~iw 122 (763)
+++|+|+|+++++ +.|++|++||+.+++....+ .+|.. .+.+++|+|+ |++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence 7899999976655 46999999999999877666 44443 3899999999 799998876 7899999
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004293 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
|+.++.... ...+ ...+..++|+| +++.|+.+. ++.|++||+.+++.......++. ..++
T Consensus 96 d~~~g~~~~--------~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~--~~v~----- 155 (719)
T 1z68_A 96 DLSNGEFVR--------GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE--NKIF----- 155 (719)
T ss_dssp ETTTTEECC--------SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT--TTEE-----
T ss_pred ECCCCcccc--------ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc--CCeE-----
Confidence 998643100 0112 24688999999 556776664 78999999987753211111100 0000
Q ss_pred CceeeccCCCCCc---------cceEEEEEeCCCCcEEEEEeCCC----------------------------------c
Q 004293 203 GAKRSLADPPKQT---------LSLKSCDISSTRPHLLLVGGSDA----------------------------------F 239 (763)
Q Consensus 203 ~~~~~~~~~~~~~---------~~v~~i~~~p~~~~~l~sgs~Dg----------------------------------~ 239 (763)
.++. ....+++|+|+ +++|+.++.|. .
T Consensus 156 ---------~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~ 225 (719)
T 1z68_A 156 ---------NGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR 225 (719)
T ss_dssp ---------ESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred ---------cccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence 0111 11258999998 78898887652 6
Q ss_pred EEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CeEEEEE----CCCC
Q 004293 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD----VNHA 311 (763)
Q Consensus 240 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d----~~i~iwd----~~~~ 311 (763)
|++||+.+++....+ ....+..+ .++.. .+..++|+||++++++.... ..|++|| +.++
T Consensus 226 l~~~d~~~~~~~~~~----------~~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 226 IFIIDTTYPAYVGPQ----------EVPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp EEEEESSCHHHHCCE----------ECCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred EEEEECCCCCcccee----------EccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 888888765421000 00000001 12333 58999999998877664432 3588899 7665
Q ss_pred C
Q 004293 312 G 312 (763)
Q Consensus 312 ~ 312 (763)
.
T Consensus 293 ~ 293 (719)
T 1z68_A 293 D 293 (719)
T ss_dssp E
T ss_pred c
Confidence 4
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=2e-17 Score=187.72 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=59.8
Q ss_pred ccCCCCEEEEecCCC--cEEEEEcCcCcEEEEEecCCcceEEEE--------eeCCCCeEEEEeCCCcEEEEcC
Q 004293 635 LGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAVVNCVQ--------CHPFDCVVATSGIDNTIKIWTP 698 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg--~i~iWd~~tg~~~~~l~gH~~~V~~v~--------~sp~~~~laS~s~D~~IrvW~~ 698 (763)
|||||++|++++.|+ .|++||++++++. .+.+|...|..++ |+|++.++++++.|++++||++
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 999999999988999 9999999999998 8899998888888 9999999999999999999999
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=1.6e-16 Score=172.35 Aligned_cols=219 Identities=10% Similarity=0.012 Sum_probs=146.3
Q ss_pred ccCceEEEEeCCCCCEEE----EEeCCCcEEEEeCCCC--------eE---EEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004293 49 HQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~La----sgs~D~~v~iWd~~~~--------~~---~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
|...|++++|+|+|++|| +|+.|++|+|||+.++ +. +..+ .+|...|.+++|+|+. +.+|+++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las~ 168 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAVC 168 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEEE
Confidence 567899999999999999 8889999999998654 21 3333 6899999999999984 6899999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004293 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
+.||+|++||+++. .......+|...|.+++|+| ++.+|++|+.||+|++||++ ++..
T Consensus 169 s~Dg~v~iwD~~~~----------~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~---------- 226 (434)
T 2oit_A 169 LADGSIAVLQVTET----------VKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEK---------- 226 (434)
T ss_dssp ETTSCEEEEEESSS----------EEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEE----------
T ss_pred ECCCeEEEEEcCCC----------cceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccc----------
Confidence 99999999999863 12444567899999999999 57899999999999999998 3211
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCC------cEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA------FARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
..+... ......|...|.+++|+++ ..++++ .+.|| .+++||++........ ....
T Consensus 227 --~~~~~~------~~~~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~--------~~~~ 289 (434)
T 2oit_A 227 --KVIPCP------PFYESDHPVRVLDVLWIGT-YVFAIVYAAADGTLETSPDVVMALLPKKEEKHPE--------IFVN 289 (434)
T ss_dssp --EEECCC------TTCCTTSCEEEEEEEEEET-TEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCC--------EEEE
T ss_pred --ccccCC------cccCCCCceeEEEEEEecC-ceEEEEEccCCCccCCCCceEEEEeccCCCCCCc--------ceEe
Confidence 000000 0001134558999999996 444433 33443 3899999865321100 0011
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 309 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~ 309 (763)
+........+.+. +-..+.+-++.+++++++. ...|.+....
T Consensus 290 ~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 290 FMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1010000011222 2224445577777777766 6667777643
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=2.2e-16 Score=165.32 Aligned_cols=246 Identities=11% Similarity=0.118 Sum_probs=166.5
Q ss_pred ccccccccchhhhhccccceeecc-ccC-ceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCC----CCceE
Q 004293 25 DVNHSLQMHSSLVRRLSQERELEG-HQG-CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH----SANVF 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~g-H~~-~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h----~~~V~ 97 (763)
..+..|.+++ ..+.+.+..+.. +.. .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..++ ...+.
T Consensus 8 ~~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 8 ARPDKLVVID--TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp ETTTEEEEEE--TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CCCCeEEEEE--CCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 3456777777 345556666653 222 48899999999765 556678899999999999887774333 22677
Q ss_pred EEEEeeCCCCcEEEEEe------------CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEE
Q 004293 98 CTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 165 (763)
+++|+|+ +++|++++ .++.|.+||+.++. .+..+. ....+.+++|+|+ +.++++
T Consensus 86 ~~~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~d-g~~l~~ 151 (337)
T 1pby_B 86 GAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARD-GSKLYG 151 (337)
T ss_dssp CEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTT-SSCEEE
T ss_pred ceEECCC--CCEEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCC-CCEEEE
Confidence 8999999 78888876 57999999998632 234443 2456888999995 455555
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCC--------cc----------c------------------------ceEEEecCCC
Q 004293 166 ASEDGTLRQHDFRQGSSCPPAGSSH--------QE----------C------------------------RNILLDLRCG 203 (763)
Q Consensus 166 ~s~dg~i~iwd~~~~~~~~~~~~~~--------~~----------~------------------------~~~~~~~~~~ 203 (763)
+ ++.|++||+.+++......... .. . ...++++..+
T Consensus 152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 5 6899999998775431100000 00 0 1234454444
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
... ......+...+.+++|+|+ +++++++ ++.|++||+.+++.+..+. . . ..+.
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~-~--~~~~ 283 (337)
T 1pby_B 230 EMA-MREVRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP-------------------L-P--HSYY 283 (337)
T ss_dssp CEE-EEEEEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE-------------------C-S--SCCC
T ss_pred Cce-EeecCCCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceec-------------------C-C--Ccee
Confidence 332 1111223345778999997 6788877 7999999998765432221 0 1 1378
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004293 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~ 314 (763)
+++|+|+|++|++++.++.|++||+.+++..
T Consensus 284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 8999999999999988999999999986543
No 159
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.71 E-value=1.2e-15 Score=160.98 Aligned_cols=249 Identities=9% Similarity=0.043 Sum_probs=172.8
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCC--------ceE
Q 004293 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSA--------NVF 97 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~--------~V~ 97 (763)
+..+.+++ ..+.+.+..+.. ...+..++|+|+|++| +++..++.|.+||..+++.+..+..++.. .+.
T Consensus 68 ~~~v~~~d--~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 68 GGVVYRLD--PVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp SEEEEEEC--TTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred CccEEEEc--CCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence 34566666 445556666654 3457889999999955 45566899999999999988887432222 278
Q ss_pred EEEEeeCCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004293 98 CTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
+++|+|+ ++++++++ .++.|.+||..+. +....+..+...+.+++|+| ++.++++++.++.|.+|
T Consensus 145 ~~~~s~d--g~~l~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~ 211 (353)
T 3vgz_A 145 ELVADDA--TNTVYISGIGKESVIWVVDGGNI----------KLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITI 211 (353)
T ss_dssp EEEEETT--TTEEEEEEESSSCEEEEEETTTT----------EEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEE
T ss_pred eEEECCC--CCEEEEEecCCCceEEEEcCCCC----------ceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEE
Confidence 9999999 67666655 4788999999863 23445554566688999999 55778888889999999
Q ss_pred ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCCCccc
Q 004293 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~ 254 (763)
|+.+++.. ..... ...++...+.+++|+|+ ++++++++ .++.|.+||+.+++.+..+
T Consensus 212 d~~~~~~~------------~~~~~---------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 212 DTADNKIL------------SRKKL---------LDDGKEHFFINISLDTA-RQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp ETTTTEEE------------EEEEC---------CCSSSCCCEEEEEEETT-TTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ECCCCeEE------------EEEEc---------CCCCCCcccceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99877521 00100 01123446788999998 45555554 5599999999887644322
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004293 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
.. + ....++|+|+|++|+++. .++.|.+||+.+++ .......+..+..++|+|+.
T Consensus 270 ~~-------------------~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg 325 (353)
T 3vgz_A 270 AA-------------------P----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK-VVKTFDTPTHPNSLALSADG 325 (353)
T ss_dssp EC-------------------S----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEEEECCSEEEEEEECTTS
T ss_pred Ec-------------------C----CCceEEECCCCCEEEEEECCCCeEEEEECCCCe-EEEEEecCCCCCeEEEcCCC
Confidence 10 0 124589999999777666 59999999998854 33344445567788999987
Q ss_pred CCcc
Q 004293 334 NGLE 337 (763)
Q Consensus 334 ~~~~ 337 (763)
+.+.
T Consensus 326 ~~l~ 329 (353)
T 3vgz_A 326 KTLY 329 (353)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6543
No 160
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=4.8e-15 Score=170.87 Aligned_cols=208 Identities=10% Similarity=-0.003 Sum_probs=136.6
Q ss_pred eeeccccCceEEEEeCCCCCEEEEE--eCCCcEEEEeCCCCeEEEEEccCCCCceE---------EEEEe--eCCCCcE-
Q 004293 44 RELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL- 109 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasg--s~D~~v~iWd~~~~~~~~~~~~~h~~~V~---------~v~~~--p~~~~~~- 109 (763)
..+.+|...|..++|++++-++++. +.++...||....+.....+ ..|...+. ...|+ |+ ++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeE
Confidence 3466899999999999887777777 66889999996555555566 56666666 66676 88 566
Q ss_pred EEEEeC-CCcEEEEECC--C-CCCCCCCCCCCCCceeeec-----ccCceeEEEEecCCCCEEEEEeCC----------C
Q 004293 110 VVSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------G 170 (763)
Q Consensus 110 l~s~s~-dg~I~iwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~s~s~d----------g 170 (763)
|+.++. +..|.+|++. . +. ...+.. |...+..++|+| +++.|++++.+ .
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCcee
Confidence 665553 5566666654 1 11 223333 667789999999 55777777766 5
Q ss_pred cEEEEECCC------CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-------
Q 004293 171 TLRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------- 237 (763)
Q Consensus 171 ~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D------- 237 (763)
.|++||+.+ ++.. .+. ..+...+..++|+|+ +++|+.++.+
T Consensus 162 ~i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp EEEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTT
T ss_pred EEEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCC
Confidence 899999877 3210 111 012245677899998 6888877755
Q ss_pred -CcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--eEEEEECCC
Q 004293 238 -AFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH 310 (763)
Q Consensus 238 -g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~--~i~iwd~~~ 310 (763)
..|++||+. ++... ....+. .++.. .+..++|+|||++++++..++ .|++||+.+
T Consensus 216 ~~~i~~~d~~~~g~~~-----------~~~~l~------~~~~~-~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 216 GTELKTARVTEDGRFA-----------DTRTLL------GGPEE-AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp CEEEEEEEECTTSCEE-----------EEEEEE------EETTB-CEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred CcEEEEEEECCCCccc-----------ccEEeC------CCCCc-eEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 379999998 44100 000000 11122 588999999999777777788 566666544
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=6.2e-16 Score=166.00 Aligned_cols=211 Identities=10% Similarity=0.029 Sum_probs=127.8
Q ss_pred ccceeeccccC-----ceEEEEeCCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEE
Q 004293 41 SQERELEGHQG-----CVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (763)
Q Consensus 41 ~~~~~l~gH~~-----~V~~l~fsp~g~~Lasgs~D---~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s 112 (763)
+.+..|..+.. .+..++|+|||++|+..... ..|.+||+.+++..... .++......+.|+|+ ++.|+.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l~~ 97 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAFFY 97 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEEEE
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEEEE
Confidence 34455554433 37889999999998877543 46888999888765433 333333334789999 799999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeE-------------------EEEecCCCCEEEEE-----eC
Q 004293 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----SE 168 (763)
Q Consensus 113 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~sp~~~~~l~s~-----s~ 168 (763)
++.++.|++||+..+.. ......+...... +.|+|+ +..++.+ ..
T Consensus 98 ~~~~~~l~~~d~~~~~~----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEE----------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNP 166 (396)
T ss_dssp EETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCC
T ss_pred EEcCCcEEEEECCCCCc----------EEEEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCC
Confidence 99999999999986321 2222222221111 234553 2333222 34
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC------CcEEE
Q 004293 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARL 242 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D------g~i~i 242 (763)
+..|++||+.+++.. .+. .+...+..+.|+|+++..|+..+.+ ..|.+
T Consensus 167 ~~~l~~~d~~~g~~~-----------------------~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 167 TCRLIKVDIETGELE-----------------------VIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp CEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred cceEEEEECCCCcEE-----------------------eec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 567888887765411 111 1234578899999335666655543 35888
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 004293 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNHA 311 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d-----~~i~iwd~~~~ 311 (763)
||+..++... + . .......+..++|+|||++|+.++.+ +.|++||+.++
T Consensus 221 ~d~~~~~~~~-l------------------~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 221 VNEDGSNVRK-I------------------K-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EETTSCCCEE-S------------------S-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EECCCCceeE-e------------------e-ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 8876543111 0 0 00111248889999999988777653 44888888764
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=5e-15 Score=157.22 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=119.6
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC-CCCCCCCCCCC
Q 004293 64 LLISGSDD--THINVWSY--SSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS-RFSGRGLDDNA 136 (763)
Q Consensus 64 ~Lasgs~D--~~v~iWd~--~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~ 136 (763)
+|+.|+.. +.|.+|++ .+++... .........+..++|+|+ +++|++++.+ .|.+|++. .+.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~-------- 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTE-------- 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTE--------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCC--------
Confidence 35556553 46777664 5665422 221134456889999999 7889988887 99999986 421
Q ss_pred CCCceeeec-ccCceeEEEEecCCCC-EEEEEe-------------CCCcEEEEECCC-CCCCCCCCCCCcccceEEEec
Q 004293 137 ITPSALYQC-HTRRVKKLAVEVGNPH-VVWSAS-------------EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 137 ~~~~~~~~~-h~~~v~~l~~sp~~~~-~l~s~s-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 200 (763)
....... ..+.+.+++|+|++.. +++++. .++.+.+|++.. ++.. ..+...
T Consensus 73 --~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------~~~~~~ 139 (365)
T 1jof_A 73 --IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------KNVQNY 139 (365)
T ss_dssp --EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------EEEEEE
T ss_pred --EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------ceEeeE
Confidence 1111110 1133566899995432 344553 689999999974 3210 001000
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCC-CCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
. ..+...+.+++|+|+ +++|+++. .++.|++||+. +++... +.. +....+
T Consensus 140 ~----------~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~-----------~~~-----~~~~~~- 191 (365)
T 1jof_A 140 E----------YQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVEL-----------VGS-----VDAPDP- 191 (365)
T ss_dssp E----------CCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEE-----------EEE-----EECSST-
T ss_pred E----------eCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEE-----------eee-----EecCCC-
Confidence 0 012346789999998 67777765 46899999998 553210 000 000001
Q ss_pred ccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~ 310 (763)
...+..++|+|||++|++++. ++.|.+|++..
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 114889999999999988775 78999998764
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.65 E-value=2.9e-15 Score=157.67 Aligned_cols=248 Identities=10% Similarity=0.069 Sum_probs=162.3
Q ss_pred Ccccccccccchhhhhccccceeecccc-CceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCC-----CCc
Q 004293 23 RPDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SAN 95 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h-----~~~ 95 (763)
....+..|.+|+ ..+.+.+..+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+...+ ...
T Consensus 16 ~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~ 93 (349)
T 1jmx_B 16 VTNYPNNLHVVD--VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 93 (349)
T ss_dssp EEETTTEEEEEE--TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC
T ss_pred EeCCCCeEEEEE--CCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc
Confidence 344567888887 34556666666443 257899999999865 455678999999999999887773333 234
Q ss_pred eEEEEEeeCCCCcEEEEEeCC------------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEE
Q 004293 96 VFCTKFVPETSDELVVSGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (763)
Q Consensus 96 V~~v~~~p~~~~~~l~s~s~d------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 163 (763)
+.+++|+|+ +++|++++.+ +.|.+||+.++... ..+..+. +...+.+++|+|++ +++
T Consensus 94 ~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~dg-~l~ 162 (349)
T 1jmx_B 94 MYSFAISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADDG-SLY 162 (349)
T ss_dssp SSCEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTTS-CEE
T ss_pred ccceEECCC--CCEEEEEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCCC-cEE
Confidence 789999999 7888888865 89999999863211 1233333 34468999999955 544
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCC-----------------cc------c---------------------ceEEEe
Q 004293 164 WSASEDGTLRQHDFRQGSSCPPAGSSH-----------------QE------C---------------------RNILLD 199 (763)
Q Consensus 164 ~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------~~------~---------------------~~~~~~ 199 (763)
+++ +.|++||+.+++......... .. . ....++
T Consensus 163 -~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 163 -VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp -EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred -Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 444 349999998876431111110 00 0 000011
Q ss_pred cCCCceeeccCCCCCccceEEEEEeC-CCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
...+....+.. ......+.+++|+| + +++++++ ++.|.+||+.+++.+..+. .++
T Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~~- 295 (349)
T 1jmx_B 240 LKTGKTHTQEF-ADLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAAN-------------------LDH- 295 (349)
T ss_dssp TTTCCEEEEEE-EECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEE-------------------CSS-
T ss_pred ccCCcEEeccc-ccCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEc-------------------CCC-
Confidence 11111111100 11223567889999 7 6788877 8899999998865432221 011
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+.+++|+|+|++|++++.++.|++||+.+++
T Consensus 296 --~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 296 --TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp --CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred --CccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 36789999999999998889999999998854
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=4.9e-14 Score=148.97 Aligned_cols=185 Identities=6% Similarity=-0.031 Sum_probs=121.7
Q ss_pred cccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccC----
Q 004293 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG---- 91 (763)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~---- 91 (763)
.+..+.+++ ..+.+++..+..+..+ .++|+|||++|+++. .++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 355777776 4556677788777666 899999999999886 3678999999999888877322
Q ss_pred -CCCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEEe
Q 004293 92 -HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 92 -h~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
+......++|+|+ +++|+++.. ++.|.+||+.+. +.+.. +. +. ....+.+.|.++..+++.+
T Consensus 105 ~~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~----------~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 105 QGLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKG----------DYVEDVTA-AA-GCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CBCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTT----------EEEEEEGG-GT-TEEEEEECTTSSSEEEEEE
T ss_pred ccCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCC----------cEEEEEec-CC-CcceeEEcCCCCeeEEEEC
Confidence 2345678999999 788888764 689999999863 22333 22 22 2233667786667888999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004293 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
.||.+.+|++...... ...... ..+.. ....+ ..+.+.|+ +..++..+.++.|.++|+..
T Consensus 171 ~dg~~~~v~~~~~g~~-------------~~~~~~---~~~~~--~~~~~-~~~~~~~~-g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKV-------------ASQSRS---KQMFS--VKDDP-IFIAPALD-KDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp TTSSEEEEEECTTSSE-------------EEEEEC---CCCSC--TTTSC-BCSCCEEC-SSEEEEEBTTSEEEEEECSS
T ss_pred CCCcEEEEEECCCCcE-------------eeeccc---cceEc--CCCCc-eEEEeccc-CCEEEEEeCCCeEEEEEecC
Confidence 9999999998653211 000000 00000 01111 12223555 45666677889999999875
Q ss_pred C
Q 004293 248 L 248 (763)
Q Consensus 248 ~ 248 (763)
.
T Consensus 231 ~ 231 (361)
T 2oiz_A 231 D 231 (361)
T ss_dssp S
T ss_pred C
Confidence 4
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=1.1e-14 Score=169.78 Aligned_cols=112 Identities=8% Similarity=0.045 Sum_probs=88.5
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCc-----eEEEEEeeCCCCcEEEEEeCC---------C
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD---------A 117 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~~~~l~s~s~d---------g 117 (763)
...+++|+|||++|+++ |++|++||+.++++...+ .+|... ...+.|+|+ +++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccce
Confidence 35689999999999986 899999999999887666 566533 234789999 7999998876 5
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
.+.+||+.++. ...+..|...+...+|+| +++.|+.+ .++.|++||+.+++
T Consensus 93 ~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 93 SYDIYDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEEEETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSC
T ss_pred EEEEEECCCCc-----------EEEcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCc
Confidence 56799999743 334556778899999999 55666666 46899999998775
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=7.4e-14 Score=147.58 Aligned_cols=193 Identities=10% Similarity=0.073 Sum_probs=123.6
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEEEEEC
Q 004293 61 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 124 (763)
Q Consensus 61 ~g~~Lasgs------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~iwd~ 124 (763)
+++++.... .|+.|.+||..+++.+..+ ..+..+ .++|+|+ ++++++++ .++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence 556665543 3779999999999988888 445444 8999999 78888876 3678999998
Q ss_pred CCCCCCCCCCCCCCCceeeec------ccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceE
Q 004293 125 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
.+. +.+..+.. +......++++| ++++++++.. +++|.+||+.+.+..
T Consensus 89 ~t~----------~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~------------- 144 (361)
T 2oiz_A 89 DKL----------TFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV------------- 144 (361)
T ss_dssp TTC----------CEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred cCC----------cEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence 763 22344332 234577899999 5567766653 689999999887521
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCC
Q 004293 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
..+ +. ......+.+.|+++..+++.+.||.+.+|+... ++....... ...+ .
T Consensus 145 -~~~-------i~-----~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~-----~-- 197 (361)
T 2oiz_A 145 -EDV-------TA-----AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMF-----S-- 197 (361)
T ss_dssp -EEE-------GG-----GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCS-----C--
T ss_pred -EEE-------ec-----CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceE-----c--
Confidence 000 00 001123557776557888999999999999865 321100000 0000 0
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.... ...+.++|++..++..+.++.|+++|+...
T Consensus 198 ~~~~--~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 198 VKDD--PIFIAPALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp TTTS--CBCSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred CCCC--ceEEEecccCCEEEEEeCCCeEEEEEecCC
Confidence 0000 112334677878888888999999998763
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=9.9e-14 Score=144.82 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=86.3
Q ss_pred cCceEEEEeCCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC
Q 004293 50 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D------------------------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~ 105 (763)
-+.|.+|+++|+|+++++.+.+ ++|.+||..+++.+..+..++-..+..++++|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence 4679999999999999988877 479999999999887774456678999999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee---------ecccCceeEEEEecCCCCEEEEEe-CCCcEEEE
Q 004293 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH 175 (763)
Q Consensus 106 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iw 175 (763)
++++++...++.|++||..... ..+..+ .++...+..|+++|+++.++++.+ .++.|++|
T Consensus 102 -g~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 102 -GNYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp -SCEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred -CCEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 7888888889999999986321 012322 233445677777775556666665 46677777
Q ss_pred E
Q 004293 176 D 176 (763)
Q Consensus 176 d 176 (763)
|
T Consensus 172 ~ 172 (329)
T 3fvz_A 172 S 172 (329)
T ss_dssp C
T ss_pred c
Confidence 6
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.62 E-value=4.8e-14 Score=149.62 Aligned_cols=216 Identities=10% Similarity=0.106 Sum_probs=135.5
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEccCCCCceEEEEEeeCCCCcE--EEEEe-----------
Q 004293 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA----------- 114 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--l~s~s----------- 114 (763)
+...+..++|+|+|++|++++.+ .|.+||+. +++..........+.+.+++|+|+ +++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence 34568899999999999999888 99999997 777654331111123567899999 673 44553
Q ss_pred --CCCcEEEEECCCCCCCCCCCCCCCCceeee----cccCceeEEEEecCCCCEEEEEe-CCCcEEEEECC-CCCCCCCC
Q 004293 115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPA 186 (763)
Q Consensus 115 --~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~ 186 (763)
.++.+.+|++... +. ....+. .+...+.+++|+| ++++++++. .++.|++||+. +++..
T Consensus 115 ~~~~g~v~v~~~~~~-g~--------~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~--- 181 (365)
T 1jof_A 115 YKFAGYGNVFSVSET-GK--------LEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE--- 181 (365)
T ss_dssp SSSCCEEEEEEECTT-CC--------EEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE---
T ss_pred ecCCceEEEEccCCC-Cc--------CcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE---
Confidence 6899999999741 11 112222 2456799999999 456666654 46899999997 44311
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-CCcEEEEeCC--CCCCCcccCCCCCCCCc
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRR--MLPPLTSCQKRMSPPPC 263 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-Dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 263 (763)
.+.. + ..+.+...+..++|+|+ ++++++++. ++.|.+|++. +++...... .
T Consensus 182 ---------~~~~--------~-~~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~ 235 (365)
T 1jof_A 182 ---------LVGS--------V-DAPDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHH-------S 235 (365)
T ss_dssp ---------EEEE--------E-ECSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------E
T ss_pred ---------Eeee--------E-ecCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------e
Confidence 0000 0 00112345789999998 677777664 7899999875 332110000 0
Q ss_pred ccccccccccCCCCCc-----cceeEEE-EcCCCCEEEEEeCC-C-----eEEEEECC
Q 004293 264 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVN 309 (763)
Q Consensus 264 ~~~~~~~~~~~~g~~~-----~~i~~v~-~spdg~~l~~~s~d-~-----~i~iwd~~ 309 (763)
+.. .+... .++.. ..+..++ |+|||++|+++..+ + .|.+|++.
T Consensus 236 ~~~-~~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 236 FPL-IPPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EES-SCTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred EEc-CCCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 000 00000 11110 0378999 99999998877653 3 89999986
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=175.94 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=102.4
Q ss_pred EEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---ceeEEEEecCCCCEEEEEeC------
Q 004293 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE------ 168 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~s~s~------ 168 (763)
+++|+|+ +.+++ .+.|+.|++||+..+. +...+..|.. .+.+++|+| ++++|++++.
T Consensus 20 ~~~~s~d--g~~~~-~~~d~~i~~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 20 FPNWISG--QEYLH-QSADNNIVLYNIETGQ----------SYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCEESSS--SEEEE-ECTTSCEEEEESSSCC----------EEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSS
T ss_pred ccEECCC--CeEEE-EcCCCCEEEEEcCCCc----------EEEEEccccccccceeeEEECC-CCCeEEEEecCceeEE
Confidence 7899999 65444 5569999999998743 2333443433 389999999 6677777765
Q ss_pred ---CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeC
Q 004293 169 ---DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (763)
Q Consensus 169 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~ 245 (763)
++.|++||+.+++.... ..+ ...+..++|+|+ |+.|+.+. ++.|++||+
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~--------------------~~l------~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRG--------------------NEL------PRPIQYLCWSPV-GSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp SCEEEEEEEEETTTTEECCS--------------------SCC------CSSBCCEEECSS-TTCEEEEE-TTEEEEESS
T ss_pred eecceEEEEEECCCCccccc--------------------eec------CcccccceECCC-CCEEEEEE-CCeEEEEeC
Confidence 78999999988763100 000 134678999998 67888775 789999999
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccCCCCCc--------cceeEEEEcCCCCEEEEEeCC-CeEEEEEC
Q 004293 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDV 308 (763)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~i~~v~~spdg~~l~~~s~d-~~i~iwd~ 308 (763)
.+++........ ..... ..|+.. ....+++|||||++|+.++.| +.+.+|.+
T Consensus 138 ~~g~~~~l~~~~----~~~~v-------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 138 PGDPPFQITFNG----RENKI-------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp TTSCCEECCCCC----BTTTE-------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEecCC----CcCCe-------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 887543211000 00000 011111 013589999999999998864 45555544
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=9.5e-13 Score=134.29 Aligned_cols=161 Identities=7% Similarity=0.098 Sum_probs=108.8
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEE
Q 004293 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVW 164 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~ 164 (763)
++-..+.+++++|+ +.++++...++.|.+||... ..+..+. ++...+..+++.+.++.+++
T Consensus 27 g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g-----------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEG-----------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp TCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTS-----------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred CccCCCceEEECCC--CCEEEEECCCCEEEEECCCC-----------cEEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence 45567899999998 78888888899999999763 1122222 34467899999543666666
Q ss_pred EEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEE
Q 004293 165 SASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 243 (763)
Q Consensus 165 s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iw 243 (763)
+... ++.|++|| .+++.. ..+. ..+...+.+++++|+ ++++++...++.|.+|
T Consensus 94 ~~~~~~~~i~~~d-~~g~~~--------------~~~~----------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 94 TERSPTHQIQIYN-QYGQFV--------------RKFG----------ATILQHPRGVTVDNK-GRIIVVECKVMRVIIF 147 (286)
T ss_dssp EECGGGCEEEEEC-TTSCEE--------------EEEC----------TTTCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred EcCCCCCEEEEEC-CCCcEE--------------EEec----------CccCCCceEEEEeCC-CCEEEEECCCCEEEEE
Confidence 6643 78999999 333311 0000 012345789999997 6788877788999999
Q ss_pred eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
|.. ++.+..+. . .++.. .+..++++|+|+.+++.+.++.|++||...
T Consensus 148 ~~~-g~~~~~~~-------------~-----~~~~~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g 194 (286)
T 1q7f_A 148 DQN-GNVLHKFG-------------C-----SKHLE-FPNGVVVNDKQEIFISDNRAHCVKVFNYEG 194 (286)
T ss_dssp CTT-SCEEEEEE-------------C-----TTTCS-SEEEEEECSSSEEEEEEGGGTEEEEEETTC
T ss_pred cCC-CCEEEEeC-------------C-----CCccC-CcEEEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 964 32221110 0 01111 488999999999777777799999999743
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=1.1e-12 Score=137.09 Aligned_cols=197 Identities=5% Similarity=0.012 Sum_probs=134.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
..|.+++|++++..+++.+.++.++.| .++....+ ..+...+.+++|+|+ +++++++..++.|.+||...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~-- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKE-- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCC--
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCc--
Confidence 457889999998888877888999999 45566666 466677899999998 7888888889999999987532
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004293 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
.......+...+.+++++| ++.++++...+ +.|.+||..+.... .+..
T Consensus 78 --------~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~~~~------- 129 (333)
T 2dg1_A 78 --------IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ------------DIIE------- 129 (333)
T ss_dssp --------EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE------------EEEC-------
T ss_pred --------EEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE------------EEEc-------
Confidence 1222224567899999999 55777776666 68999998766421 0100
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeC------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004293 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
.......+.+++++|+ ++++++... .+.|..||..+++.. .+. . .. .
T Consensus 130 ----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~-~------~~-~ 182 (333)
T 2dg1_A 130 ----DLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--------------PII-Q------NI-S 182 (333)
T ss_dssp ----SSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEE--------------EEE-E------EE-S
T ss_pred ----cCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEE--------------Eee-c------CC-C
Confidence 0012346889999997 566666543 245666665443211 000 0 00 1
Q ss_pred ceeEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 004293 281 HLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~-s~d~~i~iwd~~~ 310 (763)
.+..++|+|+|++|+.+ +.++.|++|++.+
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 37889999999876555 4588999999864
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.54 E-value=3.9e-13 Score=156.65 Aligned_cols=262 Identities=10% Similarity=0.094 Sum_probs=156.6
Q ss_pred ccccccchhhhhccccceeeccccCc-----eEEEEeCCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEccCC
Q 004293 27 NHSLQMHSSLVRRLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGH 92 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~-----V~~l~fsp~g~~Lasgs~D---------~~v~iWd~~~~~~~~~~~~~h 92 (763)
+..|.+|+ +.+.+....+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... + ..|
T Consensus 35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-~~~ 110 (740)
T 4a5s_A 35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-ERI 110 (740)
T ss_dssp TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S-SCC
T ss_pred CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c-ccC
Confidence 56778887 4455556667777643 3448899999999998876 556799999988543 4 567
Q ss_pred CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC---------ceeEEEEecCCCCEE
Q 004293 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVV 163 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l 163 (763)
...+...+|+|+ |+.||.+. ++.|++|++..+....+.. .......+.++.+ ....+.|+| +++.|
T Consensus 111 ~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l 185 (740)
T 4a5s_A 111 PNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL 185 (740)
T ss_dssp CTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred CCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence 788999999999 78888885 6899999998643211100 0001112223322 224589999 55777
Q ss_pred EEEeCC-CcEEEEECCCCCCC------------CCCCCCCcccceEEEecCC---C---ceeeccCCC---CCccceEEE
Q 004293 164 WSASED-GTLRQHDFRQGSSC------------PPAGSSHQECRNILLDLRC---G---AKRSLADPP---KQTLSLKSC 221 (763)
Q Consensus 164 ~s~s~d-g~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~---~~~~~v~~i 221 (763)
+.++.| +.+.+|++...... +............++++.. + ....+.... ++...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 776654 44888876432211 0011111122345667666 5 232332211 366779999
Q ss_pred EEeCCCCcEEEEEeC----CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce-----eEEEEcCCCC
Q 004293 222 DISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-----THVTFSPNGE 292 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i-----~~v~~spdg~ 292 (763)
+|+|+ +++++.... +..|++||+.+++.... |.... .+...++.. .| ..++|+|||+
T Consensus 266 ~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---------~~~~~---~l~~~~~~~-~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 266 TWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWN---------CLVAR---QHIEMSTTG-WVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp EEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEE---------ECGGG---CEEEECSSS-CSSSSSCCCCEECTTSS
T ss_pred EEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccc---------eeEEE---EeeeccCCc-eEccCcCCCceEcCCCC
Confidence 99998 666655432 34799999998751000 00000 000011111 22 3678999999
Q ss_pred EEE-EEeC-CC--eEEEEECCCC
Q 004293 293 EVL-LSYS-GE--HVYLMDVNHA 311 (763)
Q Consensus 293 ~l~-~~s~-d~--~i~iwd~~~~ 311 (763)
.|+ ..+. +| .|++||+.++
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEEEEEcCCCceEEEEEECCCC
Confidence 877 6654 43 6777777653
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=6.3e-13 Score=139.75 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=54.4
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcE-EEEcCCCCCCccccCCCCCC
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI-KIWTPSASVPSIVSGGAAGP 713 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~I-rvW~~~~~~~~~~~~g~~~~ 713 (763)
|+ |+ ++++++.|+.++|| +.+|++. .+..+.+.|.+++|+| .++++++.++.. +||.+. ++ ...+.+|+..
T Consensus 271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 271 KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 78 88 99999999999999 8878774 4455688899999999 778887777765 777766 43 4445555544
Q ss_pred C
Q 004293 714 D 714 (763)
Q Consensus 714 ~ 714 (763)
+
T Consensus 343 ~ 343 (347)
T 2gop_A 343 I 343 (347)
T ss_dssp T
T ss_pred H
Confidence 3
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.49 E-value=4.5e-13 Score=154.30 Aligned_cols=232 Identities=11% Similarity=-0.018 Sum_probs=143.5
Q ss_pred cccccchhhhhccccceeeccccCceE---------EEEeC--CCCCE-EEEEeC-CCcEEEEeCC--C-CeEEEEEccC
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVN---------AISWN--SKGSL-LISGSD-DTHINVWSYS--S-RKLLHSIETG 91 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~---------~l~fs--p~g~~-Lasgs~-D~~v~iWd~~--~-~~~~~~~~~~ 91 (763)
....+|.. ......+.|..|...|. ...|+ |||++ |+.++. +..|.+|++. + ++ ...+ ..
T Consensus 47 ~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~ 122 (662)
T 3azo_A 47 GRATLVRR--RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TP 122 (662)
T ss_dssp TEEEEEEE--CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SC
T ss_pred CcEEEEEE--CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cC
Confidence 34455543 22234566777776666 66665 99998 776654 5667777765 3 43 3444 34
Q ss_pred -----CCCceEEEEEeeCCCCcEEEEEeCC----------CcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEE
Q 004293 92 -----HSANVFCTKFVPETSDELVVSGAGD----------AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAV 155 (763)
Q Consensus 92 -----h~~~V~~v~~~p~~~~~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~ 155 (763)
|...+.+++|+|+ |+.|++++.+ ..|++||+....... ......+. .+...+..++|
T Consensus 123 ~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~ 195 (662)
T 3azo_A 123 VSAVGGGLRWADPVLLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD-----RSAVRELSDDAHRFVTGPRL 195 (662)
T ss_dssp CCCSTTCEEEEEEEEETT--TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC-----GGGSEESSCSCSSEECCCEE
T ss_pred CccCCCCccccCcEECCC--CCEEEEEEecccCCCCCCceeEEEEEECCCCcccc-----CCceeEEEecCCCcccCceE
Confidence 6778899999999 7899988877 589999998511000 00023344 45677888999
Q ss_pred ecCCCCEEEEEeCC--------CcEEEEECC-CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004293 156 EVGNPHVVWSASED--------GTLRQHDFR-QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 156 sp~~~~~l~s~s~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
+| ++++|+.++.+ ..|++||+. +++.. ....+. ..+...+..++|+|+
T Consensus 196 Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---------~~~~l~-------------~~~~~~~~~~~~spd 252 (662)
T 3azo_A 196 SP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---------DTRTLL-------------GGPEEAIAQAEWAPD 252 (662)
T ss_dssp CT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---------EEEEEE-------------EETTBCEEEEEECTT
T ss_pred CC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---------ccEEeC-------------CCCCceEcceEECCC
Confidence 99 56777766654 379999988 34100 001111 112456789999998
Q ss_pred CCcEEEEEeCCC--cEEEEeCCCCCCCcccCCCCCCCCcccccccccccC-CCCCccceeEEEEcCCCCEEEEEeCCCeE
Q 004293 227 RPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (763)
Q Consensus 227 ~~~~l~sgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~v~~spdg~~l~~~s~d~~i 303 (763)
+++++++..++ .|.+||+.+++...... .+... ...-...+..++|+|+++++++++. +.+
T Consensus 253 -g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--------------~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 253 -GSLIVATDRTGWWNLHRVDPATGAATQLCR--------------REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp -SCEEEEECTTSSCEEEEECTTTCCEEESSC--------------CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred -CeEEEEECCCCCeEEEEEECCCCceeeccc--------------ccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 56888888888 56666665543211110 00000 0000001567899999999999988 999
Q ss_pred EEEECC
Q 004293 304 YLMDVN 309 (763)
Q Consensus 304 ~iwd~~ 309 (763)
+||.++
T Consensus 317 ~l~~~d 322 (662)
T 3azo_A 317 VLGILD 322 (662)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999554
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.46 E-value=3.7e-11 Score=133.46 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=149.1
Q ss_pred ccccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEccCCCCceEEEEEe--
Q 004293 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV-- 102 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~--~~~~~~~~~~~h~~~V~~v~~~-- 102 (763)
+..+.+.+ ..+.+++.++... ..+..+.|+|||++|++++.|+.|.+||+. +++.+..+..+ .....++|+
T Consensus 176 ~~~V~viD--~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALID--GSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKM 250 (567)
T ss_dssp TTEEEEEE--TTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCS
T ss_pred CCeEEEEE--CCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccc
Confidence 34555555 4455666666533 356799999999999999999999999996 88888888433 346899999
Q ss_pred --eCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeeec----------ccC-ceeEEEEecCCCCEEEEEeC
Q 004293 103 --PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASE 168 (763)
Q Consensus 103 --p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~~l~s~s~ 168 (763)
|+ |+++++++. ++.|.++|..+. +++..+.. |.. .+..+..+++++.++++...
T Consensus 251 ~~pD--Gk~l~v~n~~~~~v~ViD~~t~----------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 251 EGWE--DKYAIAGAYWPPQYVIMDGETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp TTCT--TTEEEEEEEETTEEEEEETTTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred cCCC--CCEEEEEEccCCeEEEEECCCC----------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 68 677666554 699999998763 22333321 222 67788888877778888888
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCC
Q 004293 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM 247 (763)
Q Consensus 169 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~ 247 (763)
+|.|.++|....+.. .+.... .......+.|+|+ +++|+++. .++.|.++|+.+
T Consensus 319 ~g~v~~vd~~~~~~~------------~v~~i~------------~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 319 TGKILLVDYTDLNNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp TTEEEEEETTCSSEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTT
T ss_pred CCeEEEEecCCCccc------------eeeeee------------ccccccCceECCC-CCEEEEEeCCCCeEEEEECCC
Confidence 899999998765311 011000 1123567889998 56665554 678999999998
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004293 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA 311 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iwd~~~~ 311 (763)
++.+..+... .. ..|....++ + ++|++..+.+.+ .++.|.++|..+.
T Consensus 374 ~kl~~~i~vg-------------g~--~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 374 GKLVAIEDTG-------------GQ--TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp TEEEEEEECS-------------SS--SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CcEEEEEecc-------------Cc--CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 7644332110 00 112211232 2 688855555443 4689999998773
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=2e-10 Score=117.41 Aligned_cols=200 Identities=10% Similarity=0.061 Sum_probs=138.6
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004293 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
+..+...+.++++.++|+++++...++.|.+||.. ++........+...+.++++.++ +.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECCC
Confidence 44566789999999999988877778899999988 55433221335577999999998 7888887778899999976
Q ss_pred CCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 126 RFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
. . ...+ ......+..|++.| ++.++++...++.|.+||. +++.. .+.
T Consensus 87 g-~-----------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~-------------~~~---- 135 (299)
T 2z2n_A 87 G-I-----------IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIR-------------EYE---- 135 (299)
T ss_dssp S-C-----------EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEE----
T ss_pred C-c-----------EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEE-------------Eec----
Confidence 2 1 1112 22455789999998 5577777777889999997 43310 010
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
.+.....+..++++++ ++++++...++.|..||. +++... + ..+ ... ..+.
T Consensus 136 -------~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~------------~~~------~~~-~~~~ 186 (299)
T 2z2n_A 136 -------LPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDITE-F------------KIP------TPA-SGPV 186 (299)
T ss_dssp -------CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE-E------------ECS------STT-CCEE
T ss_pred -------CCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEEE-e------------eCC------CCC-Ccce
Confidence 0112345789999997 577777767789999998 543211 0 000 011 1478
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC
Q 004293 284 HVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
+++++++|...++...++.|.+|+.
T Consensus 187 ~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 187 GITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT
T ss_pred eEEECCCCCEEEEccCCceEEEECC
Confidence 9999999997666666889999987
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.45 E-value=1.8e-11 Score=141.94 Aligned_cols=194 Identities=9% Similarity=0.010 Sum_probs=117.2
Q ss_pred CCCCEEEEEeCC-C----cEEEEeCCCCeEEEEE-----ccCCCCceEEEEEeeCCCCcEEEEEeCCC-----cEEEEEC
Q 004293 60 SKGSLLISGSDD-T----HINVWSYSSRKLLHSI-----ETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNL 124 (763)
Q Consensus 60 p~g~~Lasgs~D-~----~v~iWd~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-----~I~iwd~ 124 (763)
|+|++++-...+ + .+.+.+..+++....+ ..+|...+..++|+|+ |++|+.++.++ .|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--g~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSED--GEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTT--SSEEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCC--CCEEEEEEcCCCCceEEEEEEEC
Confidence 889988755432 2 3344444444432222 1235456889999999 78888766543 8999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc----------------EEEEECCCCCCCCCCCC
Q 004293 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT----------------LRQHDFRQGSSCPPAGS 188 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~----------------i~iwd~~~~~~~~~~~~ 188 (763)
.++. ...... ....+..++|+| +++.|+.++.++. |++|++.+++..
T Consensus 159 ~tg~----------~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~----- 221 (710)
T 2xdw_A 159 DGAK----------ELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE----- 221 (710)
T ss_dssp TTTE----------EEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-----
T ss_pred CCCC----------CCcccc-cCcccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-----
Confidence 8743 122111 122367899999 5567777777665 889998765411
Q ss_pred CCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC-----CCcEEEEeCCC------CC-CCcccCC
Q 004293 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-----DAFARLYDRRM------LP-PLTSCQK 256 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~-----Dg~i~iwd~~~------~~-~~~~~~~ 256 (763)
. ..+.....+...+..+.|+|+ +++|+.++. +..|++||+.+ +. ....
T Consensus 222 ------~----------~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--- 281 (710)
T 2xdw_A 222 ------D----------ILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK--- 281 (710)
T ss_dssp ------C----------EEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE---
T ss_pred ------c----------eEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEE---
Confidence 0 011122223445778999998 577776664 56899999875 32 1111
Q ss_pred CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CeEEEEECCCC
Q 004293 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHA 311 (763)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d----~~i~iwd~~~~ 311 (763)
+ ..+.. .+.. .|+|+|+.|+..+.. ..|++||+.++
T Consensus 282 ----------l-------~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 282 ----------L-------IDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp ----------E-------ECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred ----------e-------eCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 1 01111 1333 488999988877653 36888887663
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.45 E-value=7.6e-12 Score=133.65 Aligned_cols=247 Identities=9% Similarity=-0.019 Sum_probs=153.8
Q ss_pred hhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEE--eeCCCCcEEEEE-
Q 004293 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDELVVSG- 113 (763)
Q Consensus 37 ~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~~l~s~- 113 (763)
....+......+|...+..++|+|||+.|+.++.++.|++||+.+++....+ ..+...+....| +|+ +.+++..
T Consensus 67 ~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~~l~~~~ 143 (388)
T 3pe7_A 67 LNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CTKLVGIE 143 (388)
T ss_dssp TTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SSEEEEEE
T ss_pred CCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CCeecccc
Confidence 4555555566677766667889999999999999999999999998876655 455555554544 666 6777643
Q ss_pred ---------------------eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec-CCCCEEEEEeCC--
Q 004293 114 ---------------------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASED-- 169 (763)
Q Consensus 114 ---------------------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~s~s~d-- 169 (763)
..+..|.+||+.++. ...+..+...+..++|+| ++ ..|+.+..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~ 211 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDD-STVAFCHEGPH 211 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCT
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCC-CEEEEEEecCC
Confidence 244679999998642 444556777899999999 65 555555443
Q ss_pred ----CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE-EeCCC----cE
Q 004293 170 ----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA----FA 240 (763)
Q Consensus 170 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s-gs~Dg----~i 240 (763)
..|.++|+...... .+.. ......+...+|+|+ ++.|+. +..++ .|
T Consensus 212 ~~~~~~l~~~d~~~~~~~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMR-----------------------KVKT-HAEGESCTHEFWVPD-GSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp TTSSCSEEEEETTSCCCE-----------------------ESCC-CCTTEEEEEEEECTT-SSCEEEEEEETTCCCEEE
T ss_pred CCCcceEEEEeCCCCceE-----------------------Eeee-CCCCcccccceECCC-CCEEEEEecCCCCCcceE
Confidence 36777777654311 1111 011135678899998 555544 33322 39
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE---------eCCCeEEEEECCCC
Q 004293 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS---------YSGEHVYLMDVNHA 311 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~---------s~d~~i~iwd~~~~ 311 (763)
++||+.+++... +..+ +.. .+.......++|+|||+.|+.. ..+..|++||+.++
T Consensus 267 ~~~d~~~g~~~~-----------l~~~-~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 267 YSADPETLENRQ-----------LTSM-PAC----SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEECTTTCCEEE-----------EEEE-CCE----EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEecCCCceEE-----------EEcC-CCc----eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 999999875211 0000 000 0000001223799999988864 44679999999985
Q ss_pred CccceEeecCC-----------CCeeeeeccCCCCcccCC
Q 004293 312 GGRAMRYTVGD-----------ASKIMSFTPTLNGLELQP 340 (763)
Q Consensus 312 ~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~ 340 (763)
.. .....+.. .....+|+|+.+.+.+..
T Consensus 331 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 331 TQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp EE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred ce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 43 33333333 356678999887665543
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.43 E-value=2.9e-11 Score=123.88 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=109.5
Q ss_pred EEEEEccCCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004293 84 LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 84 ~~~~~~~~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 162 (763)
.+..+ ..+.....+++|+|+ ++ +++++..++.|..||...+ ...+..+...+.+|+++| ++.+
T Consensus 19 ~~~~l-~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~l~~~~-dg~l 82 (296)
T 3e5z_A 19 EARRL-ADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ------------LSPEMHPSHHQNGHCLNK-QGHL 82 (296)
T ss_dssp CCEEE-ECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC------------EEEEESSCSSEEEEEECT-TCCE
T ss_pred cEEEE-ecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC------------eEEEECCCCCcceeeECC-CCcE
Confidence 33444 345567889999999 56 7888888999999999852 344556777899999999 5677
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE----e---
Q 004293 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG----G--- 235 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg----s--- 235 (763)
+++...++.|.+||..+++.. .+.....+ .....++.++++|+ ++++++. +
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~------------~~~~~~~~---------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWE------------SIADSFEG---------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEE------------EEECEETT---------EECCCCCCEEECTT-SCEEEEECSHHHHCG
T ss_pred EEEecCCCeEEEEcCCCCcEE------------EEeeccCC---------CCCCCCCCEEECCC-CCEEEECCccccccc
Confidence 777767789999998766521 11100000 01224668999997 6777763 2
Q ss_pred ----------CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004293 236 ----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (763)
Q Consensus 236 ----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i 305 (763)
..+.|..++.. ++ +..+ ..+.. ..+.++|+|+|+.|++.+.++.|++
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~-~~~~--------------------~~~~~-~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GT-LSAP--------------------IRDRV-KPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SC-EEEE--------------------ECCCS-SEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cccccccccCCCcEEEEECCC-CC-EEEe--------------------ecCCC-CCccEEECCCCCEEEEeCCCCeEEE
Confidence 12345555543 22 1100 00111 3788999999999877777899999
Q ss_pred EECC
Q 004293 306 MDVN 309 (763)
Q Consensus 306 wd~~ 309 (763)
|++.
T Consensus 198 ~~~~ 201 (296)
T 3e5z_A 198 YCLN 201 (296)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9987
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=1.1e-11 Score=143.73 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=130.2
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~-----~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~---- 118 (763)
+|...+..++|||||++||.++.++ +|++||+.+++.+.... .+ ..+..++|+|+ ++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspD--g~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHD--GKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTT--SSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeC--CCEEEEEEECCccccc
Confidence 3555788999999999999775543 89999999998776431 22 23678999999 788988888766
Q ss_pred ------------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-----CCcEEEEECCC--
Q 004293 119 ------------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ-- 179 (763)
Q Consensus 119 ------------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-----dg~i~iwd~~~-- 179 (763)
|++|++.++.... ..+.....|...+..+.|+|+ +++|+.++. +..|++||+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred cccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccc
Confidence 9999998643211 012222235566789999995 456555543 56899999876
Q ss_pred ----CCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCCCC
Q 004293 180 ----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPL 251 (763)
Q Consensus 180 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~~~ 251 (763)
+... ...+. .+...+.. .|+|+ +..|+..+.+ ..|.+||+.++...
T Consensus 271 ~~~~~~~~----------~~~l~--------------~~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 271 NGITGILK----------WVKLI--------------DNFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES 324 (710)
T ss_dssp SSSCSSCC----------CEEEE--------------CSSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred cccCCccc----------eEEee--------------CCCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 3210 01111 01112222 47786 4555555443 36999998765310
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeE--EEEECCC
Q 004293 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV--YLMDVNH 310 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i--~iwd~~~ 310 (763)
....+.+ . .....+..++|++++.++++...|+.. ++|++.+
T Consensus 325 -----------~~~~l~~-----~-~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 325 -----------KWKVLVP-----E-HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp -----------GCEEEEC-----C-CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred -----------cceeccC-----C-CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence 0011100 1 111248889999887778888888854 4555544
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.42 E-value=3.1e-11 Score=122.96 Aligned_cols=221 Identities=10% Similarity=0.134 Sum_probs=150.5
Q ss_pred ccccccchhhhhccccceeec------cccCceEEEEe-CCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEE
Q 004293 27 NHSLQMHSSLVRRLSQERELE------GHQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFC 98 (763)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~------gH~~~V~~l~f-sp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~ 98 (763)
+..|.+++.. .+.+..+. +|...+.++++ .+++.++++... ++.|++|| .+++.+..+...+...+.+
T Consensus 50 ~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~ 125 (286)
T 1q7f_A 50 NHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRG 125 (286)
T ss_dssp GTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEE
T ss_pred CCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceE
Confidence 4556666532 23334442 35567899999 578887777643 78999999 5677777774445567899
Q ss_pred EEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004293 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd 176 (763)
+++.|+ ++++++...++.|.+||... ..+..+. .+...+..|+++| +++++++...++.|++||
T Consensus 126 i~~~~~--g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~ 191 (286)
T 1q7f_A 126 VTVDNK--GRIIVVECKVMRVIIFDQNG-----------NVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFN 191 (286)
T ss_dssp EEECTT--SCEEEEETTTTEEEEECTTS-----------CEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEE
T ss_pred EEEeCC--CCEEEEECCCCEEEEEcCCC-----------CEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEc
Confidence 999998 78888888889999999653 1233332 3456789999999 557777777889999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccC
Q 004293 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~ 255 (763)
..... +..+ ...++...+..++++|+ ++++++...++ .|++||.. ++.+..+.
T Consensus 192 ~~g~~---------------~~~~---------~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~~ 245 (286)
T 1q7f_A 192 YEGQY---------------LRQI---------GGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISALE 245 (286)
T ss_dssp TTCCE---------------EEEE---------SCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEEE
T ss_pred CCCCE---------------EEEE---------ccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEEc
Confidence 74321 1110 01122346789999997 67888887776 99999964 33222111
Q ss_pred CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. .... ..+.+++++|+|+++++ +.|+.|++|++...
T Consensus 246 -------------~-----~~~~-~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 246 -------------S-----KVKH-AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -------------E-----SSCC-SCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -------------c-----cCCC-CcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 0 0011 13778999999986665 67999999998663
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.40 E-value=2.8e-12 Score=148.31 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=127.2
Q ss_pred cccCceEEEEeCCCCCEEE-----EEeCCCcEEEEeCCCCeEEEEEccCCCCce--EEEEEeeCCCCcEEEEEeCCCc--
Q 004293 48 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLLHSIETGHSANV--FCTKFVPETSDELVVSGAGDAE-- 118 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~La-----sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V--~~v~~~p~~~~~~l~s~s~dg~-- 118 (763)
+|...+.+++|||||++|| +|+.+.+|++||+.+++.+. ..+...+ ..++|+|+ ++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspD--g~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPD--SKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTT--SSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecC--CCEEEEEEecCCCC
Confidence 5666799999999999999 44556789999999987641 1122222 68999999 799999988876
Q ss_pred -----------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC----cEEEEECCCCCCC
Q 004293 119 -----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSC 183 (763)
Q Consensus 119 -----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg----~i~iwd~~~~~~~ 183 (763)
|++|++.++.... ..+.....|...+..+.|+|++ ++|+.++.++ .|++||..+++.
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~- 264 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF- 264 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred CccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-
Confidence 9999998743211 1233333455678899999955 5555555444 566665433321
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEe---CCCcEEEEeCCCCCCCcccCCCCCC
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSP 260 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs---~Dg~i~iwd~~~~~~~~~~~~~~~~ 260 (763)
..+.. +...+....+ +++ .+++.+. .++.|.+||+.++...
T Consensus 265 -----------~~l~~--------------~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~--------- 308 (695)
T 2bkl_A 265 -----------RLLVK--------------GVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA--------- 308 (695)
T ss_dssp -----------EEEEE--------------CSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG---------
T ss_pred -----------EEeec--------------CCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc---------
Confidence 11111 1122344445 443 4444444 2578999998765310
Q ss_pred CCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004293 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
....+. ..+....+..++|+ ++..+++...|+..+||.+.
T Consensus 309 --~~~~l~------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 309 --SWKEIV------PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp --GCEEEE------CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred --CCeEEe------cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 001110 01112247888888 66777888889988888654
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.40 E-value=1.8e-11 Score=127.49 Aligned_cols=225 Identities=9% Similarity=0.017 Sum_probs=152.9
Q ss_pred ccccchhhhhccccceeec-cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc--------cCCCCceEE
Q 004293 29 SLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--------TGHSANVFC 98 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~-gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~--------~~h~~~V~~ 98 (763)
.|.+++. .+.+++..+. ++-.....|+|+|+|+++++...++.|++||..... .+..+. .++...+..
T Consensus 70 ~i~~~d~--~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDP--NNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECT--TTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEEC--CCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 4555542 2333444443 455678999999999999999999999999986542 445552 234457899
Q ss_pred EEEeeCCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeee----------cccCceeEEEEecCCCCEEEEEe
Q 004293 99 TKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 99 v~~~p~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
++|+|+. +.++++.+ .++.|++||... ..+..+. ++...+..|+++|+++.++++..
T Consensus 148 ia~~~~~-g~lyv~d~~~~~~I~~~~~~g-----------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 148 VAVEPST-GAVFVSDGYCNSRIVQFSPSG-----------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp EEECTTT-CCEEEEECSSCCEEEEECTTS-----------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred EEEeCCC-CeEEEEeCCCCCeEEEEcCCC-----------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC
Confidence 9999932 78888886 699999999542 2233332 23345899999996578888888
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE-------eCCCcE
Q 004293 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-------GSDAFA 240 (763)
Q Consensus 168 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg-------s~Dg~i 240 (763)
.++.|++||..+++.. . ......+...+.+++|+| +..+++. ..+..|
T Consensus 216 ~~~~I~~~~~~~G~~~--------------~---------~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v 270 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFV--------------R---------EIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQG 270 (329)
T ss_dssp TTTEEEEEETTTCCEE--------------E---------EECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCE
T ss_pred CCCEEEEEECCCCcEE--------------E---------EEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEE
Confidence 8999999998866421 0 011112334677888988 2333333 334589
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
++||..+++.+..+... .++.. ....|+++|+|..+++...++.|++|++..
T Consensus 271 ~~~~~~~g~~~~~~~~~-----------------~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 271 FVMNFSSGEIIDVFKPV-----------------RKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEETTTCCEEEEECCS-----------------SSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEcCCCeEEEEEcCC-----------------CCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 99999888655433110 11222 488999999997777777899999999875
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.39 E-value=1.3e-11 Score=142.70 Aligned_cols=194 Identities=7% Similarity=-0.025 Sum_probs=114.7
Q ss_pred CCCCCEEEEEeCCC---cEEEE--eCCCCeEEEEE-----ccCCCCceEEEEEeeCCCCcEEE-----EEeCCCcEEEEE
Q 004293 59 NSKGSLLISGSDDT---HINVW--SYSSRKLLHSI-----ETGHSANVFCTKFVPETSDELVV-----SGAGDAEVRLFN 123 (763)
Q Consensus 59 sp~g~~Lasgs~D~---~v~iW--d~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~~~l~-----s~s~dg~I~iwd 123 (763)
+|+|++++....++ .-.|| +...+.....+ ..+|...+.+++|+|+ |++|+ .|+.+..|++||
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPD--G~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWD--GKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTT--SSEEEEEEEETTCSCCEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCC--CCEEEEEECCCCCceEEEEEEE
Confidence 37899888766543 34445 44444433222 1246667999999999 78888 344457899999
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc-------------EEEEECCCCCCCCCCCCCC
Q 004293 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-------------LRQHDFRQGSSCPPAGSSH 190 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~-------------i~iwd~~~~~~~~~~~~~~ 190 (763)
+.++.... ...+... ....++|+| +++.|+.++.|.. |++|++.+++..
T Consensus 154 l~tg~~~~--------~~~~~~~--~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------- 215 (695)
T 2bkl_A 154 VDSGEWSK--------VDVIEGG--KYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------- 215 (695)
T ss_dssp TTTCCBCS--------SCCBSCC--TTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-------
T ss_pred CCCCCCcC--------CcccCcc--cccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-------
Confidence 99743210 0011111 126789999 5577777777766 999998876411
Q ss_pred cccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC----cEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----FARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
...+...+.+...+.++.|+|+ +++|+.++.++ .|++||..++... .
T Consensus 216 --------------~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~l~~~~~~~~~~~--------------~ 266 (695)
T 2bkl_A 216 --------------DTVVHERTGDPTTFLQSDLSRD-GKYLFVYILRGWSENDVYWKRPGEKDFR--------------L 266 (695)
T ss_dssp --------------CEEEECCCCCTTCEEEEEECTT-SCCEEEEEEETTTEEEEEEECTTCSSCE--------------E
T ss_pred --------------ceEEEecCCCCEEEEEEEECCC-CCEEEEEEeCCCCceEEEEEcCCCCceE--------------E
Confidence 0112222334456789999998 57777666555 5666655433211 1
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCeEEEEECCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHA 311 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----d~~i~iwd~~~~ 311 (763)
+. .+.. .+....+ ++|. |+..+. ++.|++||+.++
T Consensus 267 l~-------~~~~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 267 LV-------KGVG-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp EE-------ECSS-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred ee-------cCCC-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 10 0111 2445556 5666 554443 578888887663
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.38 E-value=9.7e-11 Score=122.16 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=155.0
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---
Q 004293 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--- 116 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--- 116 (763)
.+....+.++...+.+++|+|+|++++++..++.|.+||..+++..... ..+...+.+++|+|+ ++++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d--g~l~v~~~~~~~~ 110 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKS 110 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSS
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC--CcEEEEeCCCCCC
Confidence 3455667778788899999999998889989999999999988765544 356678999999999 6888877766
Q ss_pred -CcEEEEECCCCCCCCCCCCCCCCceee--ecccCceeEEEEecCCCCEEEEEeC------CCcEEEEECCCCCCCCCCC
Q 004293 117 -AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 117 -g~I~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 187 (763)
+.|.+||...... ...+ ..+...+.+++++| ++.++++... .+.|..+|..+++.
T Consensus 111 ~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~----- 174 (333)
T 2dg1_A 111 TGGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----- 174 (333)
T ss_dssp CCEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCE-----
T ss_pred CceEEEEeCCCCEE----------EEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEE-----
Confidence 6899999875321 1111 12445789999999 5567666543 24555565543321
Q ss_pred CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCccc
Q 004293 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN 265 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 265 (763)
..+. .....+..++|+|+ ++.| ++.+.++.|.+||+.+ +..+..+.. .
T Consensus 175 -------~~~~--------------~~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~--------~ 224 (333)
T 2dg1_A 175 -------TPII--------------QNISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGA--------T 224 (333)
T ss_dssp -------EEEE--------------EEESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------E
T ss_pred -------EEee--------------cCCCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccc--------e
Confidence 0010 01124678999997 5544 5556688999999864 222111000 0
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC------CCeeeeeccCCCC
Q 004293 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD------ASKIMSFTPTLNG 335 (763)
Q Consensus 266 ~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~p~~~~ 335 (763)
.+ ... .++ ..+..++++++|+++++...++.|.+||... +.......... .+..++|+|+...
T Consensus 225 ~~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 225 IP--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp EE--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred EE--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 00 000 112 1478899999999877777889999999843 32222222211 4567778776433
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.36 E-value=4.4e-11 Score=124.51 Aligned_cols=183 Identities=5% Similarity=-0.070 Sum_probs=116.3
Q ss_pred CCCcEEEEeCCCCeEEEEEcc-----CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeee
Q 004293 70 DDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 144 (763)
Q Consensus 70 ~D~~v~iWd~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 144 (763)
.++.|.+||.++++....+.. ........+.+.. +.++++...++.|.+||..+.+ .+..+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~~~~~~v~viD~~t~~----------~~~~i~ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVVNNSHVIFAIDINTFK----------EVGRIT 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEEGGGTEEEEEETTTCC----------EEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEEcCCCEEEEEECcccE----------EEEEcC
Confidence 478999999999987655421 1224467787753 4677777778999999998732 245553
Q ss_pred cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEe
Q 004293 145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (763)
Q Consensus 145 ~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 224 (763)
.......|+++++ +.++++...++.|.+||+.+.+.. ..+... ...+.......+++
T Consensus 82 -~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~------------~~i~~g--------~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 -GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEIT------------GYIECP--------DMDMESGSTEQMVQ- 138 (328)
T ss_dssp -CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEE------------EEEECT--------TCCTTTCBCCCEEE-
T ss_pred -CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEE------------EEEEcC--------CccccCCCcceEEE-
Confidence 3467889999884 466655558899999999876521 001100 00011113345666
Q ss_pred CCCCcEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---
Q 004293 225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (763)
Q Consensus 225 p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--- 300 (763)
. ++.++++.. .++.|.+||+.+++.+..+.. +. ....++++|+|++++++..+
T Consensus 139 ~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------------------g~---~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 139 Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-------------------GI---QPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------------------SS---CBCCCEECTTSEEEEEBCCBCTT
T ss_pred E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------------------CC---CccceEEcCCCCEEEEECCCccC
Confidence 2 344444443 489999999998754432210 00 24568899999876666554
Q ss_pred -------CeEEEEECCCC
Q 004293 301 -------EHVYLMDVNHA 311 (763)
Q Consensus 301 -------~~i~iwd~~~~ 311 (763)
+.|.+||..++
T Consensus 196 ~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp CSSCBCCCEEEEEETTTT
T ss_pred CccccCCceEEEEECCCC
Confidence 67888887663
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.36 E-value=3.3e-10 Score=125.85 Aligned_cols=204 Identities=11% Similarity=0.061 Sum_probs=136.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004293 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 60 p~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
|.+.++++...+++|.++|..+++.+..+.. ...+..+.|+|+ ++++++++.|+.|.+||+..... +.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence 4456777888899999999999999988843 345779999999 79999999999999999952111 22
Q ss_pred ceeeecccCceeEEEEe----cCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCC-
Q 004293 140 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ- 214 (763)
Q Consensus 140 ~~~~~~h~~~v~~l~~s----p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 214 (763)
+..+.. ......++|+ |++..++++...+++|.++|..+.+... .+... .. .......|
T Consensus 233 v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~------------~i~~~--~~-~~~~~~~~p 296 (567)
T 1qks_A 233 VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK------------IQSTR--GM-TYDEQEYHP 296 (567)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE------------EEECC--EE-CTTTCCEES
T ss_pred eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE------------EEecc--cc-ccccccccC
Confidence 444543 3346789999 6554445455567999999988765321 01100 00 00000001
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE
Q 004293 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (763)
Q Consensus 215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l 294 (763)
...+..+.++++++.+++....+|.|.++|....+.+. +.. +. . ......+.|+|+|+++
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-----------v~~-----i~-~---~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-----------TTE-----IS-A---ERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-----------EEE-----EE-C---CSSEEEEEECTTSCEE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-----------eee-----ee-c---cccccCceECCCCCEE
Confidence 12467788888766677777778999999987643111 000 00 0 1136678999999998
Q ss_pred EEEeC-CCeEEEEECCCC
Q 004293 295 LLSYS-GEHVYLMDVNHA 311 (763)
Q Consensus 295 ~~~s~-d~~i~iwd~~~~ 311 (763)
+++.. ++.|.++|+.++
T Consensus 357 ~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEGGGTEEEEEETTTT
T ss_pred EEEeCCCCeEEEEECCCC
Confidence 87775 889999999885
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.32 E-value=1.6e-11 Score=131.33 Aligned_cols=223 Identities=7% Similarity=-0.063 Sum_probs=138.4
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEE-------------------EEEeeCCCCcEEEEE
Q 004293 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG 113 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~-------------------v~~~p~~~~~~l~s~ 113 (763)
...+.|+|||++|+.++.++.|++||+.+++..... ..+...... +.|+|+ ++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~ 159 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA 159 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence 334889999999999999999999999988765544 333332222 245565 4444433
Q ss_pred -----eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC------CcEEEEECCCCCC
Q 004293 114 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS 182 (763)
Q Consensus 114 -----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d------g~i~iwd~~~~~~ 182 (763)
..+..|.+||+..+. ...+..+...+..+.|+|+++..|+.++.+ ..|.+||+..++.
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 356789999988632 233345677889999999444545444433 3588888765431
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CcEEEEeCCCCCCCcccCCC
Q 004293 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D-----g~i~iwd~~~~~~~~~~~~~ 257 (763)
. .+.. ......+..++|+|+ +++|+.++.+ +.|++||+.+++...
T Consensus 229 ~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~----- 278 (396)
T 3c5m_A 229 R-----------------------KIKE-HAEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEE----- 278 (396)
T ss_dssp E-----------------------ESSC-CCTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEE-----
T ss_pred e-----------------------Eeec-cCCCccccceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEE-----
Confidence 1 1111 011235778999998 5666655443 459999998764211
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEe----------------CCCeEEEEECCCCCccceEeec
Q 004293 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV 320 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s----------------~d~~i~iwd~~~~~~~~~~~~~ 320 (763)
+.. .. ... +.|+| ||++|+.++ .+..|++||+.++... .....
T Consensus 279 ------l~~----------~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 279 ------VMV----------MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp ------EEE----------CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred ------eee----------CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 000 00 133 88999 999888765 3478999999886532 22222
Q ss_pred CC-----------CCeeeeeccCCCCcccC
Q 004293 321 GD-----------ASKIMSFTPTLNGLELQ 339 (763)
Q Consensus 321 ~~-----------~~~~~~~~p~~~~~~~~ 339 (763)
.. .....+|+|+.+.+.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CCccccccccccCCCCCceEccCCCeEEEE
Confidence 22 14456788877665543
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.31 E-value=3.2e-10 Score=114.17 Aligned_cols=155 Identities=8% Similarity=-0.027 Sum_probs=100.8
Q ss_pred ceEEEEEeeCCCCcEEE-EEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEE
Q 004293 95 NVFCTKFVPETSDELVV-SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (763)
Q Consensus 95 ~V~~v~~~p~~~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~ 173 (763)
...+++++++ +++++ +...++.|.+||...... ......+...+.+|++.+ ++.++++.. ++.|.
T Consensus 25 ~p~~i~~~~~--g~l~v~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~ 90 (270)
T 1rwi_B 25 SPSGVAVDSA--GNVYVTSEGMYGRVVKLATGSTGT----------TVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVV 90 (270)
T ss_dssp CEEEEEECTT--CCEEEEECSSSCEEEEECC---------------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEE
T ss_pred CccceEECCC--CCEEEEccCCCCcEEEecCCCccc----------ceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEE
Confidence 7789999998 67777 546789999999764211 111122335688899999 456666655 88999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcc
Q 004293 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (763)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~ 253 (763)
+||....... .+ .......+.+++++|+ ++++++...++.|.+|+..+......
T Consensus 91 ~~d~~~~~~~-------------~~------------~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 91 TLAAGSNNQT-------------VL------------PFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp EECTTCSCCE-------------EC------------CCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred EEeCCCceEe-------------ee------------ecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCceeEee
Confidence 9997654311 00 0011245789999996 67777777788999997654321100
Q ss_pred cCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
. ..... .+.+++++|+|+.+++...++.|.+|+...
T Consensus 145 ~--------------------~~~~~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 145 P--------------------FTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp C--------------------CCSCC-SCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred c--------------------cccCC-CceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 0 00111 377899999999776666788999998765
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.31 E-value=2.1e-10 Score=117.40 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=150.2
Q ss_pred cccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc
Q 004293 40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~ 118 (763)
...+..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+ ..+...+.+++|+|+ ++++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecCCCe
Confidence 344556666777889999999998 8888889999999999887 4555 456778999999998 788887777789
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeC-----------------CCcEEEEECCCC
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDFRQG 180 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~-----------------dg~i~iwd~~~~ 180 (763)
|.+||..++.... ...... .....+..++++| ++.++++.+. .+.|..+|.. +
T Consensus 92 i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (296)
T 3e5z_A 92 LERQREPGGEWES-------IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G 162 (296)
T ss_dssp EEEECSTTCCEEE-------EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred EEEEcCCCCcEEE-------EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence 9999986532110 000111 1123567899999 5577776321 2345555443 2
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC-CCCCCcccCCCCC
Q 004293 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMS 259 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~-~~~~~~~~~~~~~ 259 (763)
+. ..+ ..+......++|+|+ ++++++.+.++.|++||+. .+.....
T Consensus 163 ~~------------~~~--------------~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~------ 209 (296)
T 3e5z_A 163 TL------------SAP--------------IRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQ------ 209 (296)
T ss_dssp CE------------EEE--------------ECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEE------
T ss_pred CE------------EEe--------------ecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCC------
Confidence 10 000 012345688999998 5677777888999999987 3321000
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeee-ccCCCCc
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF-TPTLNGL 336 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~ 336 (763)
...+ . .+.. .+.+++++++|+++++. ++.|.+|+.. ++.......+.. +..++| .|+.+.+
T Consensus 210 ----~~~~-~------~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 210 ----GVHF-T------VEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTL 271 (296)
T ss_dssp ----EEEE-C------CSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred ----CeEe-e------CCCC-CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEE
Confidence 0011 0 0111 36679999999865555 8899999987 343333333333 677778 4554433
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.30 E-value=4e-09 Score=111.31 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=119.8
Q ss_pred EeCCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEEE
Q 004293 57 SWNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRL 121 (763)
Q Consensus 57 ~fsp~g~~Lasgs~--D~---~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~i 121 (763)
...|+++++..... .. +|.++|..+++.+..+..+ ..+ .+.|+|+ ++.++.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence 34577877766553 22 8899999999998888433 333 9999999 78887775 3678999
Q ss_pred EECCCCCCCCCCCCCCCCceeeecc-------cCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcc
Q 004293 122 FNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQE 192 (763)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~ 192 (763)
||..+.+ .+..+.-- ......++|+| ++++|+.++. ++.|.++| .+++....
T Consensus 102 iD~~t~~----------~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~------- 162 (373)
T 2mad_H 102 FDPVTFL----------PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQ------- 162 (373)
T ss_pred EECCCCc----------EEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeE-------
Confidence 9998632 12222111 13356899999 5566666653 57899999 87752200
Q ss_pred cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004293 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (763)
+ + ..+ .++.+.|.+...+++.+.||.+.++|. +++........ ..+
T Consensus 163 ----~----------i-~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~-------~~~----- 208 (373)
T 2mad_H 163 ----L----------L-SSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG-------AML----- 208 (373)
T ss_pred ----E----------c-CCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc-------ccc-----
Confidence 0 0 000 124556665667888889999999999 76543111000 000
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+... -.....+.+++..++..+..+.+.+.|+...
T Consensus 209 --~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 209 --TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred --cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 00000 1233556777665555557788999988763
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.29 E-value=1.4e-09 Score=109.73 Aligned_cols=99 Identities=7% Similarity=0.028 Sum_probs=74.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC-CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCC
Q 004293 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 139 (763)
.+++|++++.|+.|.+||.++|+.+.++ ..+. ..+.++.++|+ |++|+ +.++.|..||. ++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G----------~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG----------RE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS----------CE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC----------CE
Confidence 4678999999999999999999999998 4444 57899999999 78888 45788999998 42 33
Q ss_pred ceeeecc-cCceeEEEEecCCCCEEEEEeC-CCcEEEEE
Q 004293 140 SALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHD 176 (763)
Q Consensus 140 ~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd 176 (763)
+..+..+ ...+.++.+.| +++++++.+. ++.|..+|
T Consensus 68 ~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd 105 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVN 105 (276)
T ss_dssp EEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEEC
T ss_pred EEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEe
Confidence 5566543 24677888888 5577777665 55554444
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.27 E-value=6.8e-09 Score=105.99 Aligned_cols=200 Identities=9% Similarity=0.041 Sum_probs=135.5
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.....+.++++.++|+++++...++.|.+||.. ++........+...+.++++.++ +.++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC-C
Confidence 345678999999999988888788999999988 55443222334467899999988 6777777768889999977 2
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
... ..........+.++++.+ ++.++++...++.|..||.. ++.. .+.
T Consensus 93 ~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-------------~~~-------- 140 (300)
T 2qc5_A 93 GFT---------EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-------------EYD-------- 140 (300)
T ss_dssp CEE---------EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-------------EEE--------
T ss_pred CeE---------EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-------------Ecc--------
Confidence 210 111222346789999998 55777777667889999876 3310 010
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
.+.....+.+++++++ ++++++...++.|..||. +++... +. .+ +.. ..+..+++
T Consensus 141 ---~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~~------------~~------~~~-~~~~~i~~ 195 (300)
T 2qc5_A 141 ---LPNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLEE-YP------------LP------TNA-AAPVGITS 195 (300)
T ss_dssp ---CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-EE------------CS------STT-CCEEEEEE
T ss_pred ---CCCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEEE-ee------------CC------CCC-CCcceEEE
Confidence 0112345789999997 566666666788999998 443111 10 00 011 14889999
Q ss_pred cCCCCEEEEEeCCCeEEEEEC
Q 004293 288 SPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~ 308 (763)
+++|...++....+.|.+|+.
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT
T ss_pred CCCCCEEEEccCCCEEEEEcC
Confidence 999986666666778998887
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.24 E-value=2.9e-10 Score=132.36 Aligned_cols=193 Identities=9% Similarity=0.038 Sum_probs=112.0
Q ss_pred CCCCCEEEEEeCCCc---EEEEeC--C---CCeEEEE-----EccCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEE
Q 004293 59 NSKGSLLISGSDDTH---INVWSY--S---SRKLLHS-----IETGHSANVFCTKFVPETSDELVVSGAGD-----AEVR 120 (763)
Q Consensus 59 sp~g~~Lasgs~D~~---v~iWd~--~---~~~~~~~-----~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~ 120 (763)
+|+|++++....++. -.||-. . .+..... +..+|...+..++|+|+ |++|+.++.+ ..|+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPD--G~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDD--GRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTT--SSEEEEEEEETTCSEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCC--CCEEEEEEcCCCCceEEEE
Confidence 389998886654432 555644 3 3332222 11234457889999999 7888876653 4599
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCc--------------EEEEECCCCCCCCCC
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--------------LRQHDFRQGSSCPPA 186 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~--------------i~iwd~~~~~~~~~~ 186 (763)
+||+.++.. +. ...+...+..++|+|+ +.|+.++.++. |++|++.++...
T Consensus 193 v~dl~tg~~----------~~-~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--- 256 (741)
T 1yr2_A 193 FVGVADGKP----------LA-DELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA--- 256 (741)
T ss_dssp EEETTTCCE----------EE-EEEEEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---
T ss_pred EEECCCCCC----------CC-ccCCCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---
Confidence 999987431 11 1112222367899995 56666665544 788887655310
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-----cEEEEeCCCC--CCCcccCCCCC
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-----FARLYDRRML--PPLTSCQKRMS 259 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-----~i~iwd~~~~--~~~~~~~~~~~ 259 (763)
.. .+...+.+...+..+.|+|+ +++|+..+.++ .|++||+.++ +....+
T Consensus 257 -------~~-----------lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l----- 312 (741)
T 1yr2_A 257 -------DQ-----------PVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL----- 312 (741)
T ss_dssp -------CE-----------EEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE-----
T ss_pred -------CE-----------EEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCcccEEe-----
Confidence 01 11222223345788999998 67777766543 7999998765 201111
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CeEEEEECCC
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNH 310 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d----~~i~iwd~~~ 310 (763)
..+.. .+... ++|+|+.|+..+.+ +.|++||+.+
T Consensus 313 ---------------~~~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 313 ---------------IPDLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp ---------------ECSSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred ---------------cCCCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 00111 13333 34889988887763 4588887765
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.23 E-value=4.7e-09 Score=108.14 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=58.9
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEeCCCcEEEEcCCC
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s~D~~IrvW~~~~ 700 (763)
++++|++.++...++.|.+||.++++.+..+..+...+.+++|+|++. ++++...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 789999999988899999999999998888888888999999999998 667777788999999865
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.21 E-value=4.5e-10 Score=117.73 Aligned_cols=205 Identities=7% Similarity=-0.006 Sum_probs=128.1
Q ss_pred CceEEEEeCCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---------
Q 004293 51 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------- 116 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D---~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--------- 116 (763)
..+..++|+|||++||.++.+ + .|.+||+.+++..... ..+ . +..++|+|+ ++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~~~-~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-EAK-N-IRSLEWNED--SRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-EES-E-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-cCC-C-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence 468899999999999987654 2 3888899888765544 233 3 999999999 6878777632
Q ss_pred ------------------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-------c
Q 004293 117 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T 171 (763)
Q Consensus 117 ------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-------~ 171 (763)
..|.+||+..+. .+..+.. . .+..++|+| ++ +++++..++ .
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----------~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEE----------VIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTE----------EEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred EcccceeecCcccccCccceEEEEECCCCe----------EEeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence 568899987632 1133433 3 788999999 44 777776542 3
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC--------CcEEEE
Q 004293 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY 243 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D--------g~i~iw 243 (763)
..+|.+.+++ ...+.. + ..+..+ +|+ +++|+.++.+ ..|.+|
T Consensus 200 ~~l~~~d~~~-----------------------~~~l~~---~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 200 WDIYIWEDGK-----------------------EEKMFE---K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp EEEEEEETTE-----------------------EEEEEE---E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccEEEeCCCc-----------------------eEEecc---C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEE
Confidence 4444443221 011110 1 223333 887 5677666644 367788
Q ss_pred eCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE-EEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCC
Q 004293 244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (763)
Q Consensus 244 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~-v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~ 322 (763)
| +++.. .+ . .++.. .+.. +.|+ ++ .+++++.++.++|| +.++. .........
T Consensus 250 d--~~~~~-~l-------------~------~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~ 302 (347)
T 2gop_A 250 D--GKEVM-GI-------------L------DEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRH 302 (347)
T ss_dssp C--SSCEE-ES-------------S------TTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSS
T ss_pred C--CCceE-ec-------------c------ccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCC
Confidence 7 33211 00 0 11222 4776 8999 88 88888999999999 88533 333333344
Q ss_pred CCeeeeecc
Q 004293 323 ASKIMSFTP 331 (763)
Q Consensus 323 ~~~~~~~~p 331 (763)
.+..++|+|
T Consensus 303 ~v~~~~~s~ 311 (347)
T 2gop_A 303 WIMGFDVDE 311 (347)
T ss_dssp EEEEEEESS
T ss_pred eEEeeeeeC
Confidence 455666776
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.19 E-value=1.9e-09 Score=108.49 Aligned_cols=219 Identities=6% Similarity=-0.017 Sum_probs=141.0
Q ss_pred ceEEEEeCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004293 52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (763)
Q Consensus 52 ~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~ 130 (763)
...+++++++|++++ +...++.|.+||..++... .+...+...+.++++.++ ++++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~-- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN-- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence 678999999999877 5477899999998665433 221234456889999998 67666665 8899999987421
Q ss_pred CCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004293 131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 131 ~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
...+. .....+..|++.| ++.++++...++.|.+|+..+.... .
T Consensus 99 ---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-------------~------------ 143 (270)
T 1rwi_B 99 ---------QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-------------V------------ 143 (270)
T ss_dssp ---------CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-------------E------------
T ss_pred ---------EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-------------e------------
Confidence 22221 2235688999999 5577777777889999975543211 0
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC
Q 004293 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (763)
Q Consensus 210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp 289 (763)
........+.+++++|+ ++++++...++.|.+||.......... .... ..+.++++++
T Consensus 144 ~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~-~~p~~i~~d~ 201 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDE 201 (270)
T ss_dssp CCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECT
T ss_pred eccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeec--------------------ccCC-CCceEEEECC
Confidence 00111234678999996 577777777889999998764321100 0011 1488999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCC
Q 004293 290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (763)
Q Consensus 290 dg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (763)
+|..+++...++.|.+|+................+..++++|+.
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence 99766666678999999987643222111111344566676654
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.17 E-value=1.7e-09 Score=109.00 Aligned_cols=225 Identities=11% Similarity=0.118 Sum_probs=156.9
Q ss_pred cccccccccchhhhhccccceeecccc-CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEe
Q 004293 24 PDVNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~gH~-~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~ 102 (763)
.+.+..+.+++ .++.+.+..+..+. ..++++.++|+|++|+ +.++.|..||. +++.+..+..+....+.++.+.
T Consensus 11 ~~~~~~v~~~d--~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~ 85 (276)
T 3no2_A 11 GSGWNKIAIIN--KDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARIL 85 (276)
T ss_dssp CTTCSEEEEEE--TTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEEC
T ss_pred eCCCCEEEEEE--CCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEEC
Confidence 34567788887 55677788888776 5789999999999998 45778999999 8999988843334578899999
Q ss_pred eCCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004293 103 PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 175 (763)
Q Consensus 103 p~~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iw 175 (763)
|+ ++++++.+. ++.|..+|.. +. .+..+. .+......+++.+ +++++++...++.|..|
T Consensus 86 ~d--G~~lv~~~~~~~~v~~vd~~---Gk--------~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 86 PD--GNALVAWCGHPSTILEVNMK---GE--------VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREI 151 (276)
T ss_dssp TT--SCEEEEEESTTEEEEEECTT---SC--------EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEE
T ss_pred CC--CCEEEEecCCCCEEEEEeCC---CC--------EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEE
Confidence 99 789998887 7777777753 21 122222 2223455667788 67899999999999999
Q ss_pred ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccC
Q 004293 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (763)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~ 255 (763)
|.. ++ .+|..... ..+.++.+.++ ++++++++.++.|..+|..+++.+.++.
T Consensus 152 d~~-G~--------------~~w~~~~~------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 152 APN-GQ--------------LLNSVKLS------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp CTT-SC--------------EEEEEECS------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCC-CC--------------EEEEEECC------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 987 65 23433221 13445677786 6888888888899999999888665543
Q ss_pred CCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Q 004293 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNH 310 (763)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d--------~~i~iwd~~~ 310 (763)
... + .+..-..++.++..++|..+++.+.. +..+++++..
T Consensus 204 ~~~-------------~--~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 204 AND-------------I--EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp GGG-------------S--BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred CCC-------------C--CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 110 0 00111148889999999988887522 2445666644
No 199
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=1.4e-10 Score=121.36 Aligned_cols=178 Identities=15% Similarity=0.096 Sum_probs=128.2
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEE
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-----------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~ 120 (763)
+++.|++++...+|++|+.+ .+++|++.... ....+ .+.. |+.++| + +..|+++ .++.|+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d--~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--H--GDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--E--TTEEEEE-ESSEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--C--CCEEEEE-cCCcEE
Confidence 69999999999999999998 56679865322 11222 3555 999999 5 6899988 789999
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
+||+.... .......|...+.++.+.+. + ++++..||.|.+||+..+...
T Consensus 110 v~dv~sl~----------~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~----------------- 159 (388)
T 1xip_A 110 SLDLEELS----------EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK----------------- 159 (388)
T ss_dssp EEESSSTT----------CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE-----------------
T ss_pred EEEchhhh----------ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc-----------------
Confidence 99998632 13345567778888887652 2 778899999999999876521
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCC--CcccCCCCCCCCcccccccccccC-CCC
Q 004293 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSE-HGR 277 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 277 (763)
.....|.|++|+|. | ++.|..||.+++|+...... ..++. +|..+.. .+|
T Consensus 160 ------------~~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~------------~Pp~~~~~~~~ 212 (388)
T 1xip_A 160 ------------QLAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFS------------LPSELEELPVE 212 (388)
T ss_dssp ------------EEEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEEC------------CCHHHHTSCTT
T ss_pred ------------cccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceec------------CCcccccccCC
Confidence 02347999999997 4 78899999999998876542 11111 1111111 123
Q ss_pred CccceeEEEEcCCCCEEEE
Q 004293 278 SSLHLTHVTFSPNGEEVLL 296 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~ 296 (763)
. ..|.+|+|.+++.+|++
T Consensus 213 ~-~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 213 E-YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp T-SEEEEEEESSSSEEEEE
T ss_pred C-eeEEEEEEecCCeEEEE
Confidence 3 36999999999998875
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.17 E-value=5.1e-09 Score=108.76 Aligned_cols=238 Identities=10% Similarity=-0.020 Sum_probs=153.1
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCC----CceEEEEEee
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVP 103 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~----~~V~~v~~~p 103 (763)
..+.+++ .++.+.+.++.. ......++++++++++++...++.|.+||..+++....+..+.. .....+++ .
T Consensus 64 ~~v~viD--~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~ 139 (328)
T 3dsm_A 64 HVIFAID--INTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y 139 (328)
T ss_dssp TEEEEEE--TTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred CEEEEEE--CcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence 4555555 455666677753 46688999999996666655889999999999998877743321 14567777 3
Q ss_pred CCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC----------CcE
Q 004293 104 ETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GTL 172 (763)
Q Consensus 104 ~~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d----------g~i 172 (763)
. +.++++.. .++.|.++|+.+.. .+..+.. ......++++| ++++++++..+ +.|
T Consensus 140 ~--~~lyv~~~~~~~~v~viD~~t~~----------~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 140 G--KYVYVNCWSYQNRILKIDTETDK----------VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp T--TEEEEEECTTCCEEEEEETTTTE----------EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred C--CEEEEEcCCCCCEEEEEECCCCe----------EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceE
Confidence 3 45555544 48999999998632 2333332 33467889999 55666666544 789
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004293 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
.++|..+.+.. ..+.+. . ......++|+|+ ++.|+++.. .|.+||..+++...
T Consensus 206 ~~id~~t~~v~------------~~~~~~-----------~-g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 206 YRIDAETFTVE------------KQFKFK-----------L-GDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEETTTTEEE------------EEEECC-----------T-TCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCS
T ss_pred EEEECCCCeEE------------EEEecC-----------C-CCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceee
Confidence 99998876421 011110 0 125689999997 567776654 89999998775421
Q ss_pred ccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-----eCCCeEEEEECCCCCccceEeecCCCCeee
Q 004293 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-----YSGEHVYLMDVNHAGGRAMRYTVGDASKIM 327 (763)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 327 (763)
.. +.+ .+ ......++++|++..|+++ ..++.|.+||.. ++ ....+..+..+..+
T Consensus 259 ~~------------~~~-----~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~-~~~~i~~G~~P~~~ 317 (328)
T 3dsm_A 259 RP------------FLE-----FR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK-LIDEFYVGIIPGAF 317 (328)
T ss_dssp SC------------SBC-----CC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC-EEEEEEEEESEEEE
T ss_pred ee------------eec-----CC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC-EEEEEEeccCcceE
Confidence 10 000 00 1247889999954445444 468999999998 44 34444556666667
Q ss_pred eecc
Q 004293 328 SFTP 331 (763)
Q Consensus 328 ~~~p 331 (763)
+|..
T Consensus 318 ~~~~ 321 (328)
T 3dsm_A 318 CWKL 321 (328)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 201
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=3.6e-09 Score=110.69 Aligned_cols=193 Identities=17% Similarity=0.132 Sum_probs=119.5
Q ss_pred ccccceeeccccCceEEEEeCCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEc------cCCCCceEEEEEeeCCCCcEE
Q 004293 39 RLSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPETSDELV 110 (763)
Q Consensus 39 ~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs--~D~~v~iWd~~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~~l 110 (763)
.++.+..+. ..+..++++|+|+++++.. .++.++||.+.+++. ..+. ..|...+.+++|.++ ++++
T Consensus 8 ~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~ 81 (343)
T 2qe8_A 8 RLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN--GIVW 81 (343)
T ss_dssp CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS--SEEE
T ss_pred eeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC--CcEE
Confidence 445555544 6789999999999998864 234356666655543 3331 134568999999998 6766
Q ss_pred EEEeC-----CCcEEEEECCCCCCCCCCCCCCCCceeee------cccCceeEEEEecCCCCEEEEEe---CCCcEEEEE
Q 004293 111 VSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHD 176 (763)
Q Consensus 111 ~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~s~s---~dg~i~iwd 176 (763)
++-.. +..|.+||+.+++ .+..+. .+...+..++++|+++.++++-. .++.|.+||
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d 151 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQ----------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD 151 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTE----------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred EEcCCCCcCCCCeEEEEECCCCe----------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence 65543 5789999998632 122221 22345789999986666666665 678999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCC
Q 004293 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~ 256 (763)
+.+++.. .+.+ ++. .. .... ..+.++ +..+.+.+.++.++.|..
T Consensus 152 ~~~g~~~------------r~~~---~~~----~~--~~~~---~~~~~~-g~~~~~~~~~g~~~~~~~----------- 195 (343)
T 2qe8_A 152 LQTGLAA------------RVLQ---GYP----GI--APED---IDLVID-GVPVQIGQPDGTVIRPHL----------- 195 (343)
T ss_dssp TTTCCEE------------EECT---TCT----TT--SCCS---CCCEET-TEECBEECTTSCEECCCC-----------
T ss_pred CCCCCEE------------EEec---CCC----cc--cccc---cceeEC-CEEEEeccCCCceeceec-----------
Confidence 9876421 0000 000 00 0000 223333 456666777777766532
Q ss_pred CCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-eEEEEE
Q 004293 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-HVYLMD 307 (763)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~-~i~iwd 307 (763)
.++.|+|+|+|+.|+.+..++ .|+.++
T Consensus 196 ------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 196 ------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp ------------------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred ------------------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 278899999999888887655 444333
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.13 E-value=3.3e-08 Score=102.89 Aligned_cols=194 Identities=11% Similarity=0.056 Sum_probs=122.0
Q ss_pred EEeCCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEE
Q 004293 56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVR 120 (763)
Q Consensus 56 l~fsp~g~~Lasgs~-----D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~ 120 (763)
....|+++.+..... ++.|.+.|..+++.+.++..+.. + . ++++|+ +++++.++ .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence 445789988877765 67999999999999999854433 4 4 999999 67666654 367899
Q ss_pred EEECCCCCCCCCCCCCCCCceeeecc-------cCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCc
Q 004293 121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQ 191 (763)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~ 191 (763)
+||..+.. .+..+.-. ......++|+|+ +++++.+.. ++.|.++|+.+.+..
T Consensus 113 viD~~t~~----------v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv-------- 173 (386)
T 3sjl_D 113 VFDPVTLL----------PTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFK-------- 173 (386)
T ss_dssp EECTTTCC----------EEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEE--------
T ss_pred EEECCCCe----------EEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEE--------
Confidence 99998732 23433211 124677999995 566666553 689999999987632
Q ss_pred ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccc
Q 004293 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (763)
. .+. .++ +..+.|.+...+++.+.||.+-+.++.. ++...... .
T Consensus 174 ------~--------tI~-v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~--------------~ 218 (386)
T 3sjl_D 174 ------R--------MLD-VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT--------------E 218 (386)
T ss_dssp ------E--------EEE-CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC--------------C
T ss_pred ------E--------EEE-CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec--------------c
Confidence 0 000 000 1122344456788888899999999876 43311000 0
Q ss_pred cccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Q 004293 271 HLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.+.. ....-.....|. ++|++++ .+.++.|++.|+.+.
T Consensus 219 ~~~~--~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 219 VFHP--EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp CCSC--TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred eecc--ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 0000 000011223564 7887555 555899999999774
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.10 E-value=1.1e-09 Score=127.39 Aligned_cols=204 Identities=12% Similarity=0.054 Sum_probs=119.8
Q ss_pred cccCceEEEEeCCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~---- 118 (763)
+|...+..++|||||++||.++.+ .+|++||+.+++.+... .+...+..++|+|+ +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCccccc
Confidence 344578899999999999977654 46999999999876542 12222457899998 45655555543
Q ss_pred ----------EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCCCC
Q 004293 119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSC 183 (763)
Q Consensus 119 ----------I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~~~ 183 (763)
|++|++.++.... ..+.....+...+..+.|+| ++++|+..+.+ ..|++||+.++...
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG 307 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred ccccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence 8899987643111 11222223334588999999 55666555543 37999998765200
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC----CcEEEEeCCCCC-CCcccCCCC
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLTSCQKRM 258 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D----g~i~iwd~~~~~-~~~~~~~~~ 258 (763)
+...+.. +...+... +.|+ ++.|+..+.+ +.|.+||+.++. ..
T Consensus 308 ---------~~~~l~~--------------~~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~------- 355 (741)
T 1yr2_A 308 ---------PVTALIP--------------DLKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGSTPRF------- 355 (741)
T ss_dssp ---------CCEEEEC--------------SSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSSCEE-------
T ss_pred ---------ccEEecC--------------CCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCcccc-------
Confidence 0011110 11122233 2365 5667666653 459999987631 11
Q ss_pred CCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004293 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
..+.+ ++.. .+..+.|+ ++..+++...|+..+||.+.
T Consensus 356 ------~~l~~------~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 356 ------DTVVP------ESKD-NLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp ------EEEEC------CCSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred ------EEEec------CCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 11101 1122 37778887 55667777789888887654
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.09 E-value=9.5e-08 Score=97.28 Aligned_cols=159 Identities=7% Similarity=0.005 Sum_probs=106.2
Q ss_pred cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004293 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 90 ~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..+...+.++++.++ +.++++...++.|.+||.. +... ......+...+.+|++.+ ++.++++...+
T Consensus 11 ~~~~~~~~~i~~d~~--g~l~v~~~~~~~v~~~d~~-~~~~---------~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~ 77 (299)
T 2z2n_A 11 TNQDTGPYGITVSDK--GKVWITQHKANMISCINLD-GKIT---------EYPLPTPDAKVMCLTISS-DGEVWFTENAA 77 (299)
T ss_dssp CSSSCCEEEEEECTT--SCEEEEETTTTEEEEECTT-CCEE---------EEECSSTTCCEEEEEECT-TSCEEEEETTT
T ss_pred CCcCCCccceEECCC--CCEEEEecCCCcEEEEcCC-CCeE---------EecCCcccCceeeEEECC-CCCEEEeCCCC
Confidence 345567999999998 7877777668899999987 3210 111122456789999998 55777776668
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004293 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
+.|..||.. ++. ..+.+ +.....+.+++++|+ +.++++...++.|.+||. +++
T Consensus 78 ~~i~~~~~~-g~~-------------~~~~~-----------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 78 NKIGRITKK-GII-------------KEYTL-----------PNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TEEEEECTT-SCE-------------EEEEC-----------SSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCC
T ss_pred CeEEEECCC-CcE-------------EEEeC-----------CCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCC
Confidence 889999875 220 01110 112345789999996 677777777889999998 443
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004293 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~ 308 (763)
... + ..+ .. ...+..+++.++|+..++...++.|..||.
T Consensus 131 ~~~-~------------~~~------~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 131 IRE-Y------------ELP------NK-GSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEE-E------------ECS------ST-TCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEE-e------------cCC------CC-CCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 110 0 000 01 114889999999987776666889999987
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.09 E-value=2.5e-08 Score=105.16 Aligned_cols=243 Identities=11% Similarity=0.036 Sum_probs=148.6
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccC------C
Q 004293 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------H 92 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~------h 92 (763)
.+.+++ ..+.+++.++..-..+ .++|+|||++|+.+. .++.|.+||..+.+.+..+..+ +
T Consensus 48 ~v~v~D--~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLD--AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEE--CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 444444 3455666677654444 899999999998875 3678999999998888776332 0
Q ss_pred CCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCcee-eecccCceeEEEEecCCCCEEEEEeCC
Q 004293 93 SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
......+.|+|+ +++|+.++. ++.|.++| .+++ .+.. +. .. .++.+.|.+...+++.+.|
T Consensus 124 g~~p~~~~~spD--G~~l~v~n~~~~~~v~viD-~t~~----------~~~~~i~-~~---~~~~~~~~~~~~~~~~~~d 186 (373)
T 2mad_H 124 GPYSWMNANTPN--NADLLFFQFAAGPAVGLVV-QGGS----------SDDQLLS-SP---TCYHIHPGAPSTFYLLCAQ 186 (373)
T ss_pred CCCccceEECCC--CCEEEEEecCCCCeEEEEE-CCCC----------EEeEEcC-CC---ceEEEEeCCCceEEEEcCC
Confidence 133568999999 788888774 57899999 7632 2333 22 11 2355667666777888899
Q ss_pred CcEEEEECCCCCCCCCCC-----CCCc-----------c---------cceEEEecCCCceeeccCCC----------CC
Q 004293 170 GTLRQHDFRQGSSCPPAG-----SSHQ-----------E---------CRNILLDLRCGAKRSLADPP----------KQ 214 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~-----~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~----------~~ 214 (763)
|.+.++|. +++...... .... . .....++........+.... ..
T Consensus 187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~ 265 (373)
T 2mad_H 187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR 265 (373)
T ss_pred CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence 99999998 654331000 0000 0 01111222111101000000 00
Q ss_pred ccceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004293 215 TLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 215 ~~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
......++++|+ ++.+++... .+.|.++|+.+++.+.++.. +. ...+
T Consensus 266 p~g~~~~~~s~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------------------g~---~p~~ 322 (373)
T 2mad_H 266 PGGWQQVAYLKS-SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------------GH---DVDA 322 (373)
T ss_pred cCceEeEEECCC-CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------------------CC---CcCe
Confidence 112234778887 455555443 35799999998875544321 11 3678
Q ss_pred EEEcCCCC-EEEEEe-CCCeEEEEECCCCCccce
Q 004293 285 VTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAM 316 (763)
Q Consensus 285 v~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~ 316 (763)
++|+|||+ .++++. .++.|.+||+.+.+....
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999 677776 489999999999764433
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.06 E-value=1.5e-07 Score=96.19 Aligned_cols=160 Identities=8% Similarity=-0.019 Sum_probs=98.1
Q ss_pred CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004293 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
.+..-..+..|+|+. +.++++...++.|..||...+. ...+ .....+.+++++| ++.++++ . ++
T Consensus 10 ~~~~~~Egp~w~~~~-~~l~~~d~~~~~i~~~d~~~~~-----------~~~~-~~~~~~~~i~~~~-dG~l~v~-~-~~ 73 (297)
T 3g4e_A 10 ENCRCGESPVWEEVS-NSLLFVDIPAKKVCRWDSFTKQ-----------VQRV-TMDAPVSSVALRQ-SGGYVAT-I-GT 73 (297)
T ss_dssp CCCSBEEEEEEETTT-TEEEEEETTTTEEEEEETTTCC-----------EEEE-ECSSCEEEEEEBT-TSSEEEE-E-TT
T ss_pred cCCccccCCeEECCC-CEEEEEECCCCEEEEEECCCCc-----------EEEE-eCCCceEEEEECC-CCCEEEE-E-CC
Confidence 344456789999974 6677777788999999998632 2223 2456799999999 4565544 3 56
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---------CcEE
Q 004293 171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFAR 241 (763)
Q Consensus 171 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---------g~i~ 241 (763)
.|.+||..+++. ..+..... ......++.++++|+ ++++++...+ ..-.
T Consensus 74 ~l~~~d~~~g~~------------~~~~~~~~---------~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 74 KFCALNWKEQSA------------VVLATVDN---------DKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp EEEEEETTTTEE------------EEEEECCT---------TCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEE
T ss_pred eEEEEECCCCcE------------EEEEecCC---------CCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcE
Confidence 899999876541 11111110 012345789999997 5655544321 2334
Q ss_pred EEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 004293 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVN 309 (763)
Q Consensus 242 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~-s~d~~i~iwd~~ 309 (763)
||.+.....+..+ .. .. ...+.++|+|+++.|+.+ +.++.|.+|++.
T Consensus 132 l~~~d~~g~~~~~--------------~~------~~-~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 132 LYSLFPDHHVKKY--------------FD------QV-DISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EEEECTTSCEEEE--------------EE------EE-SBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCEEEE--------------ee------cc-ccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 5544421111000 00 00 136789999999977655 458899999874
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.06 E-value=3.4e-08 Score=104.76 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=119.8
Q ss_pred CCCCEEEEEeC-C----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe----------CCCcEEEEEC
Q 004293 60 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 124 (763)
Q Consensus 60 p~g~~Lasgs~-D----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s----------~dg~I~iwd~ 124 (763)
++++.+..... + +.|.++|..+++.+.++..+. .+ .+.++|+ ++.|+.+. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46776665544 2 699999999999999995443 34 8999999 66666665 4678999999
Q ss_pred CCCCCCCCCCCCCCCceeeec-------ccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccce
Q 004293 125 SRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
.+.+ .+..+.- .......+.|+| ++++++.+.. ++.|.+.|+.+.+..
T Consensus 157 ~t~~----------vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv------------ 213 (426)
T 3c75_H 157 VTFL----------PIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFD------------ 213 (426)
T ss_dssp TTCC----------EEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEE------------
T ss_pred CCCc----------EEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEE------------
Confidence 8732 2333321 123456789999 5566666653 578999999987632
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004293 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
.. +.. + . +....|++...+++.+.||.+.+.+..+++...... ..+. .
T Consensus 214 --~~--------I~v-~-g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---------~~~~------v 261 (426)
T 3c75_H 214 --RM--------LDV-P-D-----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---------EVFH------T 261 (426)
T ss_dssp --EE--------EEC-C-S-----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------CCCS------C
T ss_pred --EE--------EEc-C-C-----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------eeec------c
Confidence 00 000 0 0 123344434567777788888888875443321100 0000 0
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+... ....+.|.+++..++..+..+.|++.|+...
T Consensus 262 ~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 262 EDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp TTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred CCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 0000 1223578999988888888899999998763
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.05 E-value=5.9e-08 Score=103.82 Aligned_cols=164 Identities=12% Similarity=0.046 Sum_probs=99.5
Q ss_pred CceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--c
Q 004293 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--T 171 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~ 171 (763)
..+..|+|+|+ ++++++...++.|++||...+. +..+........ ++|+| ++..|+++..++ .
T Consensus 131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~-----------~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNK-----------VTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHT 195 (409)
T ss_dssp CCEEEEEECST--TEEEEEETTTTEEEEEETTTTE-----------EEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCE
T ss_pred CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCE-----------EEEeeccCCCCc-eeEec-CCCcEEEEecCCCce
Confidence 46789999998 6888887778999999998532 233322233344 99999 556777777655 7
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004293 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 172 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
|.+||....... ..+-.. .......+.+++++|+++ .|+++..++.|+.||..++...
T Consensus 196 I~~~d~~~~~~~-----------~~~g~~----------~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~ 253 (409)
T 3hrp_A 196 VYVYMKASGWAP-----------TRIGQL----------GSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVT 253 (409)
T ss_dssp EEEEEGGGTTCE-----------EEEEEC----------CTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEE
T ss_pred EEEEEcCCCcee-----------EEeeec----------cchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEE
Confidence 888887654310 001000 001224567889999645 4555777889999999865311
Q ss_pred cccCCCCCCCCcccccccccccCCCCCcc-ceeEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 004293 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~v~~spd-g~~l~~~s~d~~i~iwd~~~ 310 (763)
.+. ... ..+.... +...++|+|+ +.++++-..++.|+.|+...
T Consensus 254 -~~~-------------~~~--~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 254 -LIK-------------QLE--LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp -EEE-------------ECC--CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred -EEe-------------ccc--ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 100 000 0111110 1238999996 55444555688999998765
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.99 E-value=1e-07 Score=99.12 Aligned_cols=259 Identities=10% Similarity=0.075 Sum_probs=157.7
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCC------
Q 004293 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------ 92 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h------ 92 (763)
.+.+.+ ..+.+.+.++..-..+ . ++++|||++|+.++ .++.|.+||..+++.+.++..+.
T Consensus 60 ~V~ViD--~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 60 QQFVID--GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp EEEEEE--TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred EEEEEE--CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 444444 4566777777654455 4 99999999887665 36789999999999888874322
Q ss_pred CCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC
Q 004293 93 SANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
......+.|+|+ |++++.+.. ++.|.++|+.+. +.+..+.- .+ +..+.|.+.+.+++.+.||
T Consensus 136 g~~P~~~a~spD--Gk~lyVan~~~~~~VsVID~~t~----------~vv~tI~v-~g---~~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 136 GTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGK----------AFKRMLDV-PD---CYHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp SCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTT----------EEEEEEEC-CS---EEEEEEEETTEEEEEETTS
T ss_pred CCCCceEEEcCC--CCEEEEEEcCCCCeEEEEECCCC----------cEEEEEEC-CC---cceeecCCCceeEEECCCC
Confidence 124667999999 788887764 689999999973 22344421 11 1223354666777888888
Q ss_pred cEEEEECCC-CCCC----CCCCCC--C----c----ccceEEEecCCCceeeccCCCCC---------------------
Q 004293 171 TLRQHDFRQ-GSSC----PPAGSS--H----Q----ECRNILLDLRCGAKRSLADPPKQ--------------------- 214 (763)
Q Consensus 171 ~i~iwd~~~-~~~~----~~~~~~--~----~----~~~~~~~~~~~~~~~~~~~~~~~--------------------- 214 (763)
++.+.++.. ++.. ...... . . .....+|....+....+ .....
T Consensus 200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~-d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI-DLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEE-ECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEE-ECCCCcceeecceecccccccccccc
Confidence 888888876 3320 000000 0 0 01122222222211111 11000
Q ss_pred ccceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004293 215 TLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 215 ~~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
......++++|+. +.+++... .+.|.++|+.+++.+..+.. ...+.+
T Consensus 279 p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~ 335 (386)
T 3sjl_D 279 PGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDS 335 (386)
T ss_dssp ECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECE
T ss_pred CCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcce
Confidence 1112246778874 55555432 25799999998876544321 114789
Q ss_pred EEEcCCCC-EEEEEeC-CCeEEEEECCCCCccceEeecCCCCeeeeeccC
Q 004293 285 VTFSPNGE-EVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (763)
Q Consensus 285 v~~spdg~-~l~~~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (763)
|+++||++ +|+++.. ++.|.++|..+++ .............+.++++
T Consensus 336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k-~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 336 INVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEECSSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCCSSCCEEEECC
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCc-EEEEecCCCCCceeEECCc
Confidence 99999997 6776554 8999999999965 4455555555666666665
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.97 E-value=1.1e-07 Score=101.58 Aligned_cols=219 Identities=9% Similarity=0.016 Sum_probs=137.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCC
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS 128 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~ 128 (763)
.....|+|+++|+++++...++.|++||..++...... ... .... ++|+|+ ++.|+++..++ .|.+|+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence 46789999999998888888899999999988766554 332 2233 999999 68888888766 78888876421
Q ss_pred CCCCCCCCCCCceee---ec-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004293 129 GRGLDDNAITPSALY---QC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
. ...+ .. ....+.+++++|+++.+++ +..++.|+.||..++... .+......
T Consensus 206 ~----------~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~------------~~~~~~~~- 261 (409)
T 3hrp_A 206 A----------PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT------------LIKQLELS- 261 (409)
T ss_dssp C----------EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE------------EEEECCCC-
T ss_pred e----------eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE------------EEeccccc-
Confidence 1 1122 12 4567889999996555554 667889999998765411 11000000
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004293 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
......+...++|+|+++.++++-..++.|+.|+.... +..+...... ..+... ......-. ....
T Consensus 262 ------g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~----~g~~dg-~~~~~~~~-~P~g 327 (409)
T 3hrp_A 262 ------GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ----KTVQDG-LREEALFA-QPNG 327 (409)
T ss_dssp ------SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTC----CSCBCE-EGGGCBCS-SEEE
T ss_pred ------CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC----CCcCCC-cccccEeC-CCeE
Confidence 00001111389999965777777778899999987642 1111000000 000000 00000011 3789
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 004293 285 VTFSPNGEEVLLSY-SGEHVYLMDVNHAG 312 (763)
Q Consensus 285 v~~spdg~~l~~~s-~d~~i~iwd~~~~~ 312 (763)
++++|+|+++++-+ .++.|+.|++.++.
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 99999999777777 78999999977643
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.94 E-value=5.4e-08 Score=100.07 Aligned_cols=205 Identities=10% Similarity=0.092 Sum_probs=131.9
Q ss_pred ccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEE-Ecc--C-CCCceEEEEEeeCCCCcEEEEEeCC-------
Q 004293 49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHS-IET--G-HSANVFCTKFVPETSDELVVSGAGD------- 116 (763)
Q Consensus 49 H~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~-~~~--~-h~~~V~~v~~~p~~~~~~l~s~s~d------- 116 (763)
+...+.+++++++ |+++++... ..|.+||.. ++.... ... + ....+.++++.|+ ++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccc
Confidence 5677999999999 776665544 479999998 665432 211 1 1245889999998 6777776654
Q ss_pred --------CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe----cCCCCEEEEEeCCCcEEEEECC-CCCCC
Q 004293 117 --------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFR-QGSSC 183 (763)
Q Consensus 117 --------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----p~~~~~l~s~s~dg~i~iwd~~-~~~~~ 183 (763)
+.|..||.. +. ...+..+......++|+ |++..++++...++.|.+||+. .++..
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~-----------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQ-----------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE 212 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SC-----------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred cccccCCCCeEEEECCC-CC-----------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence 456666654 11 22223344567889999 8443455555678899999976 22100
Q ss_pred CCCCCCCcccceEEEecCCCceeeccCCCCCc-cceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCC
Q 004293 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
....+.. .+.+. ..+..++++++ ++++++...++.|.+||..+++.+..+.
T Consensus 213 ---------~~~~~~~-----------~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~------- 264 (314)
T 1pjx_A 213 ---------NKKVWGH-----------IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR------- 264 (314)
T ss_dssp ---------EEEEEEE-----------CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE-------
T ss_pred ---------cceEEEE-----------CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEe-------
Confidence 0001111 11222 45678999997 6788877788999999988665332211
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 004293 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~ 311 (763)
.+. ..+.+++|+|+|++|++++ .++.|..|++...
T Consensus 265 -------------~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 265 -------------CPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -------------CSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -------------CCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 011 1489999999999666554 5789999998763
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.92 E-value=1.3e-08 Score=117.17 Aligned_cols=207 Identities=15% Similarity=0.108 Sum_probs=126.1
Q ss_pred cccCceEEEEeCCCCCEEEE-----EeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004293 48 GHQGCVNAISWNSKGSLLIS-----GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 118 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Las-----gs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~---- 118 (763)
+|...+..++|||||++||- |+.+.+|++||+.+++.+...... .....++|+ + ++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-D--g~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-G--NEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-T--TTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-C--CCEEEEEEecCccccc
Confidence 46667899999999999984 333467999999999865432111 113578899 8 688888887743
Q ss_pred ---------EEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEEEEecCCCCEEEEEeC---CCcEEEEECCCCCCCCC
Q 004293 119 ---------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPP 185 (763)
Q Consensus 119 ---------I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~s~s~---dg~i~iwd~~~~~~~~~ 185 (763)
|++|++.+..... ..+..... |...+..+.|+|++..++++.+. ...|+++|+.++...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-- 272 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-- 272 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--
T ss_pred ccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--
Confidence 9999988643211 11222233 45567889999965445455543 257999998776311
Q ss_pred CCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC---CcEEEEeCCCCCCCcccCCCCCCCC
Q 004293 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP 262 (763)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~ 262 (763)
...+. .+....... |+++++.++++...+ +.|..+|+.++...
T Consensus 273 --------~~~l~--------------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----------- 318 (693)
T 3iuj_A 273 --------LLTVQ--------------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----------- 318 (693)
T ss_dssp --------CEEEE--------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------
T ss_pred --------eEEEe--------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------
Confidence 01111 011122232 556545555555544 57888998865320
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004293 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHA 311 (763)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~--~i~iwd~~~~ 311 (763)
..+.+.+ +.. .+. .|++++++|+.... ++ .|++|++..+
T Consensus 319 ~~~~l~~-------~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 319 HWRDLIP-------ERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp GCEEEEC-------CCS-SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred ccEEEec-------CCC-CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 0111111 222 133 88999998888776 44 7899998753
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.91 E-value=1.9e-07 Score=95.36 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=142.9
Q ss_pred eeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004293 45 ELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
.+..+..--.+..|+|+ +.++++...++.|..||..+++.. .+ .....+.+++++|+ ++++++ . ++.|.+||
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVAT-I-GTKFCALN 79 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEE-E-TTEEEEEE
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEE-E-CCeEEEEE
Confidence 34445556678999995 557777778899999999887653 33 24567999999999 675554 4 56899999
Q ss_pred CCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCC---------CcEEEEECCCCCCCCCCCCCCcc
Q 004293 124 LSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQE 192 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~ 192 (763)
..++.. ..+.... .....++.++++| +++++++.... ....+|.+......
T Consensus 80 ~~~g~~--------~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--------- 141 (297)
T 3g4e_A 80 WKEQSA--------VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV--------- 141 (297)
T ss_dssp TTTTEE--------EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---------
T ss_pred CCCCcE--------EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE---------
Confidence 875321 1111111 1124578899999 45665544221 22344444322100
Q ss_pred cceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC--CCCCCcccCCCCCCCCcccccccc
Q 004293 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~ 270 (763)
..+. ......+.++|+|++..++++.+.++.|.+||+. ++.... .+.+..
T Consensus 142 --~~~~--------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------~~~~~~- 193 (297)
T 3g4e_A 142 --KKYF--------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------RRSVYK- 193 (297)
T ss_dssp --EEEE--------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------EEEEEE-
T ss_pred --EEEe--------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------cEEEEE-
Confidence 0010 1123457899999843344566678899999874 432100 000000
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec-cCCCCc
Q 004293 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL 336 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~ 336 (763)
+ .... .....++++++|++.++...++.|..||..+++.......+...+..++|. |+.+.+
T Consensus 194 -~--~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 194 -L--EKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp -C--CGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred -C--CCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEE
Confidence 0 0011 147889999999877777778999999998766444444444567788887 654443
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.90 E-value=1.3e-07 Score=100.38 Aligned_cols=254 Identities=10% Similarity=0.058 Sum_probs=151.5
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccC------
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------ 91 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~------ 91 (763)
..+.+.+ ..+.+.+.++.--..+ .++++|||++|+.+. .++.|.++|..+++.+..+..+
T Consensus 99 ~~VsVID--~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVID--GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CeEEEEE--CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 4555555 5666777777644455 899999999887775 3678999999999988887432
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004293 92 HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
.......+.|+|+ +++++.+.. ++.|.+.|+.+.+ .+..+.- .+ +....|.+...+++.+.|
T Consensus 175 ~g~~P~~~~~spD--Gk~lyV~n~~~~~~VsVID~~t~k----------vv~~I~v-~g---~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 175 VGTYQWMNALTPD--NKNLLFYQFSPAPAVGVVDLEGKT----------FDRMLDV-PD---CYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp BSCCGGGSEECTT--SSEEEEEECSSSCEEEEEETTTTE----------EEEEEEC-CS---EEEEEEEETTEEEEEETT
T ss_pred cCCCcceEEEcCC--CCEEEEEecCCCCeEEEEECCCCe----------EEEEEEc-CC---ceeeccCCCcEEEEEcCC
Confidence 1234567899999 788888774 5789999998732 2333331 11 123344444666677777
Q ss_pred CcEEEEECCCCCCCC----CC--CC------C--Ccccc----------eEEEecCCCceeeccCC-----CC-----Cc
Q 004293 170 GTLRQHDFRQGSSCP----PA--GS------S--HQECR----------NILLDLRCGAKRSLADP-----PK-----QT 215 (763)
Q Consensus 170 g~i~iwd~~~~~~~~----~~--~~------~--~~~~~----------~~~~~~~~~~~~~~~~~-----~~-----~~ 215 (763)
|.+.+.++..++... .. .. . ..... ...++........+... .. ..
T Consensus 239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 887777774433210 00 00 0 00011 11222221111100000 00 00
Q ss_pred cceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004293 216 LSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v 285 (763)
.....++++|++ +.+++... .+.|.++|+.+++.+..+.. ......+
T Consensus 319 ~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------------------g~~P~gi 375 (426)
T 3c75_H 319 GGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------------------GHEIDSI 375 (426)
T ss_dssp CSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEE
T ss_pred CCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------------------CCCcCeE
Confidence 111136899974 45555432 35799999999876554421 0137889
Q ss_pred EEcCCCC-EEEEEe-CCCeEEEEECCCCCccceEeecCCCC
Q 004293 286 TFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDAS 324 (763)
Q Consensus 286 ~~spdg~-~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~ 324 (763)
+|+|||+ +++++. .++.|.++|+.+.+........+...
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP 416 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC
Confidence 9999999 888887 49999999999976443332334333
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.89 E-value=7.6e-07 Score=90.52 Aligned_cols=201 Identities=6% Similarity=-0.034 Sum_probs=135.6
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.+...+.++++.++|.++++...++.|..||.. ++............+.++++.++ +.++++...++.|..+|.. +
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-C
Confidence 344679999999999988887778899999988 55432221334467899999988 7888877778899999876 2
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
.. . ...+......+..+++.+ +++++++...++.|..||. +++.. .+.
T Consensus 135 ~~--------~-~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~-------- 182 (300)
T 2qc5_A 135 TI--------Y-EYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLE-------------EYP-------- 182 (300)
T ss_dssp CE--------E-EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEE-------------EEE--------
T ss_pred CE--------E-EccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEE-------------Eee--------
Confidence 21 0 111222345788999998 5567766666788999997 43310 011
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
.+.....+..++++++ ++++++....+.|.+||. +++... + ..+ ... ..+.++++
T Consensus 183 ---~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~------------~~~------~~~-~~~~~i~~ 237 (300)
T 2qc5_A 183 ---LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE-Y------------DIP------TPN-ARPHAITA 237 (300)
T ss_dssp ---CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-E------------ECS------STT-CCEEEEEE
T ss_pred ---CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE-E------------ECC------CCC-CCceEEEE
Confidence 1122345789999996 677776666778999998 332111 0 000 011 14889999
Q ss_pred cCCCCEEEEEeCCCeEEEEECC
Q 004293 288 SPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~ 309 (763)
+++|+..++...++.|..|+..
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCEEEeccCCCeEEEECCC
Confidence 9999866666667999999983
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.82 E-value=9.2e-07 Score=90.56 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=102.3
Q ss_pred CCCCceEEEEEeeCCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC
Q 004293 91 GHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (763)
Q Consensus 91 ~h~~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d 169 (763)
..........|+|+ ++ ++++...++.|..|+... . ...+..+...+..+++++ +++++++...+
T Consensus 42 ~~~~~~egp~~~~~--g~~l~~~d~~~~~i~~~~~~g-~-----------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~ 106 (305)
T 3dr2_A 42 DQATWSEGPAWWEA--QRTLVWSDLVGRRVLGWREDG-T-----------VDVLLDATAFTNGNAVDA-QQRLVHCEHGR 106 (305)
T ss_dssp CCCSSEEEEEEEGG--GTEEEEEETTTTEEEEEETTS-C-----------EEEEEESCSCEEEEEECT-TSCEEEEETTT
T ss_pred cCCcCccCCeEeCC--CCEEEEEECCCCEEEEEeCCC-C-----------EEEEeCCCCccceeeECC-CCCEEEEECCC
Confidence 34456788999999 56 777777889999998742 1 344555667889999999 55766655556
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEE----EeC---------
Q 004293 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV----GGS--------- 236 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~s----gs~--------- 236 (763)
+.|.+||.. ++. ..+.....+ .....++.++++|+ ++++++ |..
T Consensus 107 ~~v~~~~~~-g~~------------~~~~~~~~~---------~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 107 RAITRSDAD-GQA------------HLLVGRYAG---------KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp TEEEEECTT-SCE------------EEEECEETT---------EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCC
T ss_pred CEEEEECCC-CCE------------EEEEeccCC---------CccCCCCCEEECCC-CCEEEeCcCCCccccccccccc
Confidence 789999875 321 111111000 01134667899997 677775 332
Q ss_pred ----CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC------CeEEEE
Q 004293 237 ----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLM 306 (763)
Q Consensus 237 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d------~~i~iw 306 (763)
.+.|..||..+++... .. .+ ...+.++|+||++.|+.+... +.|++|
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~--------------~~--~~-------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQR--------------MA--DL-------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEE--------------EE--EE-------SSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred cccCCCeEEEEcCCCCcEEE--------------Ee--cC-------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 2457777765553211 00 01 136789999999988877665 688888
Q ss_pred ECCC
Q 004293 307 DVNH 310 (763)
Q Consensus 307 d~~~ 310 (763)
++..
T Consensus 221 ~~~~ 224 (305)
T 3dr2_A 221 AWRD 224 (305)
T ss_dssp EEET
T ss_pred EecC
Confidence 8765
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.82 E-value=1e-06 Score=91.24 Aligned_cols=224 Identities=10% Similarity=-0.017 Sum_probs=133.1
Q ss_pred cCceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004293 50 QGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 50 ~~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
..-..+..|+|++ .++++...++.|.+||..+++.. .+ .....+.++.|+|+ ++++++. .+ .|.+||..++.
T Consensus 48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH--ALPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGV 120 (326)
T ss_dssp CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE--ECSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCC
T ss_pred CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE--ECCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCc
Confidence 3345788999974 56677777899999999887653 23 13467999999999 6776654 44 49999987532
Q ss_pred CCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeC------CCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004293 129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
. ..+.... .....+++++++|+ +.++++... .+.|..+| +++. ..+.
T Consensus 121 ~--------~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~-- 175 (326)
T 2ghs_A 121 L--------TLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLF-- 175 (326)
T ss_dssp E--------EEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEE--
T ss_pred E--------EEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe--CCcE------------EEee--
Confidence 1 0011111 11246889999994 466554432 23455555 2220 0010
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEE-EEEeCCCcEEEEeCC--CC-CCCcccCCCCCCCCcccccccccccCCC
Q 004293 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l-~sgs~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
......+.++|+|+ ++.| ++.+.++.|.+||+. ++ .... ...+.. + .+
T Consensus 176 ------------~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~--~--~~ 227 (326)
T 2ghs_A 176 ------------ADISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFID--S--TG 227 (326)
T ss_dssp ------------EEESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEE--C--TT
T ss_pred ------------CCCcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEE--C--CC
Confidence 01123578999998 5555 555567899999986 43 2110 000000 0 00
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec-cCCCC
Q 004293 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNG 335 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-p~~~~ 335 (763)
... ....++++++|.+.++...++.|.+|+. +++...........+..++|. |+...
T Consensus 228 ~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 228 IKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp SSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred CCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence 111 3678999999987777777889999998 434333333333456677787 65443
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.80 E-value=8.7e-08 Score=99.91 Aligned_cols=256 Identities=9% Similarity=-0.011 Sum_probs=150.0
Q ss_pred ccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCC------
Q 004293 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------ 92 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h------ 92 (763)
.+.+.+ ..+.+.+.++..-..+ .+.|+|||++|..+. .++.|.+||+.+++.+.++..+.
T Consensus 47 ~vsvID--~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSC--AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEE--TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEE--CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence 344444 5667778887654555 799999999888876 36889999999999999884320
Q ss_pred CCceEEEEEeeCCCCcEEEEEeC--CCcEEE--EECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC
Q 004293 93 SANVFCTKFVPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (763)
Q Consensus 93 ~~~V~~v~~~p~~~~~~l~s~s~--dg~I~i--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~ 168 (763)
......+.|+|+ +++++.+.. +..|.+ +|..+ +..+.- .+. +.+.|++...+++.+.
T Consensus 123 g~~P~~ia~SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 123 GPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSC 183 (368)
T ss_dssp SCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCC
T ss_pred CCCcceEEEcCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcC
Confidence 124568999999 788888765 456888 88864 122211 111 1233545566667777
Q ss_pred CCcEEEEECCC-----CCCCC----CCCCC-----Ccc---------cceEEEecCCCceeeccCCCC-------C---c
Q 004293 169 DGTLRQHDFRQ-----GSSCP----PAGSS-----HQE---------CRNILLDLRCGAKRSLADPPK-------Q---T 215 (763)
Q Consensus 169 dg~i~iwd~~~-----~~~~~----~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~-------~---~ 215 (763)
|+.+.+.|+.+ ++... ....+ ... .....++........+....- . .
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p 263 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccccccc
Confidence 88888888776 22110 00000 000 011122221111000000000 0 0
Q ss_pred cceEEEEEeCCCCcEEEEEeC---------CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004293 216 LSLKSCDISSTRPHLLLVGGS---------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 216 ~~v~~i~~~p~~~~~l~sgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
.....++|+|++ +.++++.. ++.+.++|+.+++.+..+.. ......++
T Consensus 264 ~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~ 320 (368)
T 1mda_H 264 AGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAII 320 (368)
T ss_dssp CSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEE
T ss_pred CcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEE
Confidence 011126899984 55555432 23566999998875544321 11378899
Q ss_pred EcCCCCE-EEEEe-CCCeEEEEECCCCCccceEeecCCCCeeeeecc
Q 004293 287 FSPNGEE-VLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (763)
Q Consensus 287 ~spdg~~-l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p 331 (763)
|+|||++ +++.. .++.|.++|+.+.+ .......+.....+++.+
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID~~t~k-vv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVELDKGPESLSVQN 366 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCCCSCCCEEECCC
T ss_pred ECCCCCEEEEEccCCCCeEEEEECCCCc-EEEEEECCCCCCEEEeec
Confidence 9999985 55555 49999999999954 444445555555555543
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.80 E-value=6.2e-08 Score=101.28 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=103.3
Q ss_pred cccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004293 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.+.. |+.|+| |+.+|+++ .++.|++||+.+....... ..|...|.++.+.+. .++++..||.|.+||+...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS----EEEEEETTSEEEEEETTTC
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC----CEEEEECCCCEEEEEccCC
Confidence 4666 999999 99999999 8899999999876554445 567778998888765 2888899999999999863
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
. . ..+...|++++|+|.+ ++.|..||++++|+....+.. ....+ ... ..
T Consensus 157 ~-----------~---~~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~---------~k~~I---~~P--p~ 205 (388)
T 1xip_A 157 S-----------T---KQLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEME---------KQFEF---SLP--SE 205 (388)
T ss_dssp C-----------E---EEEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEE---------EEEEE---CCC--HH
T ss_pred c-----------c---ccccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccc---------cccee---cCC--cc
Confidence 2 1 1255689999999944 667999999999987665410 00000 000 00
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVG 234 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sg 234 (763)
+....++...|.++.|.++ ..++++-
T Consensus 206 ~~~~~~~~~~V~sI~wl~~-~~flv~y 231 (388)
T 1xip_A 206 LEELPVEEYSPLSVTILSP-QDFLAVF 231 (388)
T ss_dssp HHTSCTTTSEEEEEEESSS-SEEEEEE
T ss_pred cccccCCCeeEEEEEEecC-CeEEEEE
Confidence 1111235678999999996 5666653
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.79 E-value=1.3e-07 Score=98.58 Aligned_cols=79 Identities=8% Similarity=-0.047 Sum_probs=63.9
Q ss_pred ccCCCCEEEEecC---------CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCC-eEEEEe-CCCcEEEEcCCCCCC
Q 004293 635 LGQRGDYIASGSD---------DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASVP 703 (763)
Q Consensus 635 ~s~d~~~l~sgs~---------Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~-~laS~s-~D~~IrvW~~~~~~~ 703 (763)
|++|+++|+.+.. +..+.|+|+++++.++.+.... ...+++|+|+++ ++++.. .+++|.|+|+.+.+.
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 8999988776532 2356699999999999887654 589999999996 678887 699999999999999
Q ss_pred ccccCCCCCCC
Q 004293 704 SIVSGGAAGPD 714 (763)
Q Consensus 704 ~~~~~g~~~~~ 714 (763)
+....-+.+|.
T Consensus 350 v~~I~vg~~P~ 360 (368)
T 1mda_H 350 QSSVELDKGPE 360 (368)
T ss_dssp EEECCCCSCCC
T ss_pred EEEEECCCCCC
Confidence 88876555553
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.78 E-value=2.3e-09 Score=113.20 Aligned_cols=185 Identities=11% Similarity=0.081 Sum_probs=103.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004293 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
++.+|++++.|+.|+.||..+|+.+..+. . ..+.+..+.++ +..+++++.|+.|+.||..+++. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~----------~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEG----------L 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CC----------S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCce----------e
Confidence 57889999999999999999999998883 3 45555556666 56788888999999999986432 2
Q ss_pred eeeecccC-cee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004293 141 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (763)
Q Consensus 141 ~~~~~h~~-~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (763)
..+..+.. .+. ...+. .+..+++++.|+.|+.||.++++.. |..... .
T Consensus 73 w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~--- 122 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F--- 122 (369)
T ss_dssp EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred eeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence 22221111 110 00111 2246677888999999999988732 211110 0
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC---CEEE
Q 004293 219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL 295 (763)
Q Consensus 219 ~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg---~~l~ 295 (763)
...++|. +..+++++.|+.|+.||.++++.+..+... .....++.++. ..++
T Consensus 123 -~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 123 -ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred -ccccccc-CCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence 1234554 568889999999999999998765433100 01112233322 4577
Q ss_pred EEeCCCeEEEEECCCCCccc
Q 004293 296 LSYSGEHVYLMDVNHAGGRA 315 (763)
Q Consensus 296 ~~s~d~~i~iwd~~~~~~~~ 315 (763)
+++.|+.|+.||..+++...
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEETSCEEEEECTTTCCEEE
T ss_pred EECCCCEEEEEECCCCcEEE
Confidence 88899999999999976433
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.77 E-value=4.6e-07 Score=104.25 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=49.1
Q ss_pred ccCCCCEEEEecCCC---cEEEEEcCcCcEEEEEe-cCCcceEEEEeeCCCCeEEEEeCC----CcEEEEcCCCCCC
Q 004293 635 LGQRGDYIASGSDDG---RWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGID----NTIKIWTPSASVP 703 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg---~i~iWd~~tg~~~~~l~-gH~~~V~~v~~sp~~~~laS~s~D----~~IrvW~~~~~~~ 703 (763)
|++++++|+....++ .|++||++.+ ..+.+. .+.+.|..+.++|++..|+-...+ ++|..||+.+++.
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 788888887776544 7999999854 445554 355678888999988755544444 7899999877653
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.77 E-value=1.1e-06 Score=100.40 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=42.7
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEE
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATS 687 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~ 687 (763)
++..+.+|+.|+.||.++.||.+||+++-.++.+.+. .+-+.|..+++ |++..
T Consensus 482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 5668889999999999999999999999998865443 35677888886 55544
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.71 E-value=6e-07 Score=91.95 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=139.4
Q ss_pred ccceeeccccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcE
Q 004293 41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (763)
Q Consensus 41 ~~~~~l~gH~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I 119 (763)
..+..+..+........|+|+|+ +++++..++.|..|+. +++ ...+ ..+...+.+++++++ ++++++...++.|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v 109 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAI 109 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE-EESCSCEEEEEECTT--SCEEEEETTTTEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE-eCCCCccceeeECCC--CCEEEEECCCCEE
Confidence 34455555667788999999998 6778888899999998 444 2334 345567899999998 6777666666889
Q ss_pred EEEECCCCCCCCCCCCCCCCce-eeec-ccCceeEEEEecCCCCEEEE----EeC-------------CCcEEEEECCCC
Q 004293 120 RLFNLSRFSGRGLDDNAITPSA-LYQC-HTRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDFRQG 180 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~-~~~~-h~~~v~~l~~sp~~~~~l~s----~s~-------------dg~i~iwd~~~~ 180 (763)
.+|+.. +.. ..+. ...+ ....++.+++.| ++.+++| |.. .+.|..||..++
T Consensus 110 ~~~~~~-g~~--------~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 110 TRSDAD-GQA--------HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp EEECTT-SCE--------EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred EEECCC-CCE--------EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 999875 221 0011 1111 123577899999 5567765 322 245666666544
Q ss_pred CCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCC------CcEEEEeCCCCCCCccc
Q 004293 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSC 254 (763)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~D------g~i~iwd~~~~~~~~~~ 254 (763)
+.. .+. .....+.++|+|+ ++.|+++... +.|++||+.... +..
T Consensus 180 ~~~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~- 229 (305)
T 3dr2_A 180 PLQ-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD- 229 (305)
T ss_dssp CCE-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEE-
T ss_pred cEE-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccC-
Confidence 311 010 1224578999998 5667766655 789999987532 110
Q ss_pred CCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeeccCCC
Q 004293 255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (763)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (763)
...+... . ......++++++|+ |.++..+ .|.+|+... +. ...+.....+..++|.|+.+
T Consensus 230 ---------~~~~~~~------~-~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g-~~-~~~~~~~~~~~~~~f~~d~~ 289 (305)
T 3dr2_A 230 ---------RRHFASV------P-DGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG-QL-LGHIPTPGTASNCTFDQAQQ 289 (305)
T ss_dssp ---------EEEEECC------S-SSCCCSEEECTTSC-EEECCSS-EEEEECTTS-CE-EEEEECSSCCCEEEECTTSC
T ss_pred ---------CeEEEEC------C-CCCCCeEEECCCCC-EEEecCC-cEEEECCCC-CE-EEEEECCCceeEEEEeCCCC
Confidence 0000000 0 11245688999999 4555544 599999843 32 23333333466777876544
Q ss_pred C
Q 004293 335 G 335 (763)
Q Consensus 335 ~ 335 (763)
.
T Consensus 290 ~ 290 (305)
T 3dr2_A 290 R 290 (305)
T ss_dssp E
T ss_pred E
Confidence 3
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.68 E-value=2.8e-06 Score=87.88 Aligned_cols=193 Identities=11% Similarity=0.117 Sum_probs=117.8
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC--C-CCceEEEEEeeCCCCcEEEEEeCC----CcEEEE
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--H-SANVFCTKFVPETSDELVVSGAGD----AEVRLF 122 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h-~~~V~~v~~~p~~~~~~l~s~s~d----g~I~iw 122 (763)
...|.+++|+|+|+++++. .+ .|.+||..+++........ . ...+.+++++|+ |+++++...+ +...||
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence 4579999999999987765 44 4999999888754332111 1 246889999998 6776655421 223444
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC--CC-CCCCCCCCCCcccceEEEe
Q 004293 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD 199 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~ 199 (763)
.+.. +. ...+..+......++|+|++..++++.+.++.|.+||+. ++ +.. ....+..
T Consensus 165 ~~~~--g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~ 224 (326)
T 2ghs_A 165 HVAK--GK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID 224 (326)
T ss_dssp EEET--TE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred EEeC--Cc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence 4332 11 222323344678899999554455555667899999986 33 210 0111111
Q ss_pred cCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
+ ......+..++++++ ++++++...++.|.+||. +++.+..+. ...
T Consensus 225 ~-----------~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------------~~~- 270 (326)
T 2ghs_A 225 S-----------TGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYE--------------------VPG- 270 (326)
T ss_dssp C-----------TTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEE--------------------CSC-
T ss_pred C-----------CCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEE--------------------CCC-
Confidence 1 112234578999997 577776666788999998 443222110 011
Q ss_pred cceeEEEEc-CCCCEEEEEeCC
Q 004293 280 LHLTHVTFS-PNGEEVLLSYSG 300 (763)
Q Consensus 280 ~~i~~v~~s-pdg~~l~~~s~d 300 (763)
..+++++|+ |+++.|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 148999998 898877666543
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.59 E-value=4.5e-06 Score=95.19 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=49.4
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCC-eEEEEeC----------------CCcEEEE
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDC-VVATSGI----------------DNTIKIW 696 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~-~laS~s~----------------D~~IrvW 696 (763)
+..++.+|+.|+.||.+++||..||+++..+.-. ....+-+.|.++++ +++..+. .+.+.++
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f 563 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF 563 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEE
Confidence 5668889999999999999999999999999744 44455677788886 4444222 3677888
Q ss_pred cCC
Q 004293 697 TPS 699 (763)
Q Consensus 697 ~~~ 699 (763)
.+.
T Consensus 564 ~l~ 566 (677)
T 1kb0_A 564 VVG 566 (677)
T ss_dssp EET
T ss_pred ecc
Confidence 776
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=4e-06 Score=95.65 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004293 648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
.|.|..||+.||+.+-.+.. ...+++..+++.+.+++.++.|+.|++||..+++.+..+.
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 48899999999999888764 3456666777888888999999999999999999887664
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=7.4e-06 Score=80.55 Aligned_cols=226 Identities=7% Similarity=-0.026 Sum_probs=137.0
Q ss_pred ccccceeeccccC--ceEEEEeCCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 39 ~~~~~~~l~gH~~--~V~~l~fsp~g~~Lasgs~--D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
+.+.+.++. |.. ....|+|++++.+.++.+. ++.|.+.|+.+++.+..+..+.......+++.. +.+.++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---EKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---CEEEEEEe
Confidence 355666664 543 3689999998766666553 579999999999999887433222333455552 35666666
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.++.|.++|..+. +.+..+..-.. ....+++++..++++ ..++.|.++|..+.+..
T Consensus 84 ~~~~v~viD~~t~----------~v~~~i~~g~~--~g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~----------- 139 (266)
T 2iwa_A 84 LKNIGFIYDRRTL----------SNIKNFTHQMK--DGWGLATDGKILYGS-DGTSILYEIDPHTFKLI----------- 139 (266)
T ss_dssp TCSEEEEEETTTT----------EEEEEEECCSS--SCCEEEECSSSEEEE-CSSSEEEEECTTTCCEE-----------
T ss_pred cCCEEEEEECCCC----------cEEEEEECCCC--CeEEEEECCCEEEEE-CCCCeEEEEECCCCcEE-----------
Confidence 7899999999863 23444432112 223455655556655 46889999999886522
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
..+ . +.........++.+.|. + +.+++....++.|.+.|..+++.+..+.... ..+.....
T Consensus 140 ~~I-~--------Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--------~~~~~~~~ 200 (266)
T 2iwa_A 140 KKH-N--------VKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPN--------LRKKLIDE 200 (266)
T ss_dssp EEE-E--------CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHH--------HHHHHHHT
T ss_pred EEE-E--------ECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCC--------cccccccc
Confidence 000 0 00000011235677787 4 5566665568899999999988655443110 00000000
Q ss_pred CCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCC
Q 004293 275 HGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA 311 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~ 311 (763)
........+.|+|+|+++.|++++ ..+.|+..++...
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 001112478999999987776666 4889999988763
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.54 E-value=6.9e-06 Score=93.88 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=51.4
Q ss_pred CCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCC
Q 004293 648 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 709 (763)
Q Consensus 648 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g 709 (763)
+|.|+.||+.||+.+-.+..+.. +..-.++..+.+++.++.|+.|++||.++++.+..+.-
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 58999999999999988877654 34456777888999999999999999999999876653
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=98.80 Aligned_cols=143 Identities=12% Similarity=0.071 Sum_probs=73.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004293 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
+..+++++.|+.|+.||..+++ .+..+.. +.+.+..+.. ++.++++++.||.|+.||..+++..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~--- 72 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGS----------IKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGL--- 72 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCC----------EEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCS---
T ss_pred CCEEEEEcCCCEEEEEECCCCC----------EEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCcee---
Confidence 5789999999999999998743 2445543 4555554555 4457777789999999999887632
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
|.........+. ..+ .+. . +..+++++.|+.|+.||..+++.+..+..
T Consensus 73 -----------w~~~~~~~~~~~-----~sp----~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------- 120 (369)
T 2hz6_A 73 -----------TKLPFTIPELVQ-----ASP----CRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSS---------- 120 (369)
T ss_dssp -----------EECSCCHHHHHT-----TCS----CC-------CCCCEEEEEEEEECCC--------------------
T ss_pred -----------eeeeccCccccc-----cCc----eEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecC----------
Confidence 110000000000 000 111 1 34778888999999999999876543311
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
+. .+.++|++..|++++.|+.|+.||..+++
T Consensus 121 ----------~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 121 ----------AF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ---------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ----------CC-----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 10 13456788889999999999999998854
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=3.8e-06 Score=87.53 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=132.5
Q ss_pred cccCceEEEEeCCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEccC-----CCCceEEEEEeeCCCCcEEEEEe---
Q 004293 48 GHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELVVSGA--- 114 (763)
Q Consensus 48 gH~~~V~~l~fsp~g~~Lasgs~-----D~~v~iWd~~~~~~~~~~~~~-----h~~~V~~v~~~p~~~~~~l~s~s--- 114 (763)
+|...+..++|+++|+++++-.. ++.|.+||+.+++.+..+... +...+..+++.|+. +..+++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC
Confidence 46678999999999987776544 578999999999877766321 22456899999863 55566665
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCcee-EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
.++.|.+||+.++. ....+.+|..... ...+.+ ++..+.+.+.++.++.|.
T Consensus 143 ~~~~i~v~d~~~g~----------~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~----------------- 194 (343)
T 2qe8_A 143 DKAALIRVDLQTGL----------AARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH----------------- 194 (343)
T ss_dssp GGCEEEEEETTTCC----------EEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-----------------
T ss_pred CCCeEEEEECCCCC----------EEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-----------------
Confidence 68899999998632 1233333321110 133444 445666677777776553
Q ss_pred ceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC-cEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004293 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (763)
..++.++|+|+ ++.|+++..++ .+..++....... .+ .....+. .+
T Consensus 195 ----------------------~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~~~~~-~~-------~~~~~~~--~~ 241 (343)
T 2qe8_A 195 ----------------------LGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSADLSNL-QL-------TDAELGS--KI 241 (343)
T ss_dssp ----------------------CCEEEEEECTT-SCEEEEEESSCSEEEEEEHHHHTCT-TC-------CHHHHHT--TC
T ss_pred ----------------------cccceeEeccC-CCEEEEEeCCCCeEEEEEHHHhcCC-CC-------Chhhhhc--ce
Confidence 12578999997 67777777665 4444443211000 00 0000000 00
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec--CCCCeeeeeccC
Q 004293 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPT 332 (763)
Q Consensus 273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~p~ 332 (763)
...++.. ....++++++|.++++...++.|.+||..++.. ...... ...+..++|.|+
T Consensus 242 ~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 242 ERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp EEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTT
T ss_pred EecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCC
Confidence 0001111 356799999999888888899999999855432 222211 233556777765
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.44 E-value=0.00014 Score=76.53 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCC--------CCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004293 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h--------~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
.+..|+.++.++.|..+|..+|+.+..+.... ...+.+.- ... +..++.++.++.|..+|..+++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~v~v~~~~g~l~a~d~~tG~---- 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVS--GGHVYIGSEKAQVYALNTSDGT---- 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEE--TTEEEEEETTSEEEEEETTTCC----
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEe--CCEEEEEcCCCEEEEEECCCCC----
Confidence 46678888889999999999999887663221 12232222 223 4678888899999999998743
Q ss_pred CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004293 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
.+................ + ..++.++.++.|..+|.++++.
T Consensus 125 ------~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 125 ------VAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV 165 (376)
T ss_dssp ------EEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred ------EEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence 133333222212222232 2 3666788899999999988763
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.42 E-value=5.9e-05 Score=75.22 Aligned_cols=219 Identities=7% Similarity=0.013 Sum_probs=132.6
Q ss_pred CceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..+..++|++++. ++++-..++.|..+++.++.....+ .........+++.|+. +.++++-...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~- 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQ- 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCC-
Confidence 4578999999655 4455556789999999866543333 2333567999999973 5566666667899999987421
Q ss_pred CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004293 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
...+ .........++++|+++.++++... .+.|..+++..... ..+..
T Consensus 113 ----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~~------- 163 (267)
T 1npe_A 113 ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ------- 163 (267)
T ss_dssp ----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC-------
T ss_pred ----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEEE-------
Confidence 1122 1122467899999966566655543 46788888754321 11110
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004293 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
........++++|+++.++++-...+.|.++|+...... .+.. +.. ....++
T Consensus 164 ------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--------------~~~~------~~~--~P~gi~ 215 (267)
T 1npe_A 164 ------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------------KVLE------GLQ--YPFAVT 215 (267)
T ss_dssp ------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE--------------EEEE------CCC--SEEEEE
T ss_pred ------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE--------------EEec------CCC--CceEEE
Confidence 012346889999975555566666789999998743211 0100 011 134566
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCCccceEeecCC--CCeeeeeccC
Q 004293 287 FSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGD--ASKIMSFTPT 332 (763)
Q Consensus 287 ~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~p~ 332 (763)
.. +..|+.+. ..+.|..+|..+++..... ..+. .+..+++.|+
T Consensus 216 ~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i-~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 216 SY--GKNLYYTDWKTNSVIAMDLAISKEMDTF-HPHKQTRLYGITIALS 261 (267)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTTEEEEEE-CCSSCCCCCCEEEECS
T ss_pred Ee--CCEEEEEECCCCeEEEEeCCCCCceEEE-ccccccccceeeecCc
Confidence 54 45555555 5789999999886533332 2222 3555666664
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.41 E-value=0.00018 Score=71.60 Aligned_cols=190 Identities=7% Similarity=0.041 Sum_probs=113.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEE----EEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCC
Q 004293 63 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT 138 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 138 (763)
.+|..+.. +.|+.+++...... ..+.......+.+++|+|+. +.++++-..++.|..+++....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~---------- 69 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGE---------- 69 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCC----------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCC----------
Confidence 44555443 47888888754321 11111122457899999973 5566666667899999987421
Q ss_pred CceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccce
Q 004293 139 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218 (763)
Q Consensus 139 ~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 218 (763)
..............|+++|.++.++++-...+.|.++++..... ..+.. ......
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P 124 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVNP 124 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSE
T ss_pred cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEE-------------CCCCCc
Confidence 11122222346789999996666777777778999999864321 11110 011345
Q ss_pred EEEEEeCCCCcEEEEEeC--CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 004293 219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (763)
Q Consensus 219 ~~i~~~p~~~~~l~sgs~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~ 296 (763)
..++++|+++.++++... .+.|..+++.... ...+ .. .+. .....++++|++.+|+.
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~-------------~~-----~~~--~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRIL-------------AQ-----DNL--GLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEE-------------EC-----TTC--SCEEEEEEETTTTEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEE-------------EE-----CCC--CCCcEEEEcCCCCEEEE
Confidence 789999975544444433 4678888875321 1110 00 001 13788999998877766
Q ss_pred EeC-CCeEEEEECCC
Q 004293 297 SYS-GEHVYLMDVNH 310 (763)
Q Consensus 297 ~s~-d~~i~iwd~~~ 310 (763)
+.. .+.|..+++..
T Consensus 184 ~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 184 VDAGTHRAECLNPAQ 198 (267)
T ss_dssp EETTTTEEEEEETTE
T ss_pred EECCCCEEEEEecCC
Confidence 654 67888888764
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.37 E-value=1.7e-05 Score=76.89 Aligned_cols=211 Identities=10% Similarity=0.024 Sum_probs=126.7
Q ss_pred ccccceeeccccC--ceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe
Q 004293 39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (763)
Q Consensus 39 ~~~~~~~l~gH~~--~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s 114 (763)
..+.++++ .|.. ....|.|+ ++.++.+.+.+| .|+++|+++++.+..+... ...+.....+.. +.+.+..-
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g-~~ly~ltw 104 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWK-DKIVGLTW 104 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEES
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeC-CEEEEEEe
Confidence 35666777 3543 35789998 677777888766 8999999999998887332 344443333442 35555555
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
.++.+.++|..+. +.+..+.. .. ....+.+++..+++| ..++.|.++|..+.+..
T Consensus 105 ~~~~v~v~D~~t~----------~~~~ti~~-~~--eG~glt~dg~~L~~S-dGs~~i~~iDp~T~~v~----------- 159 (262)
T 3nol_A 105 KNGLGFVWNIRNL----------RQVRSFNY-DG--EGWGLTHNDQYLIMS-DGTPVLRFLDPESLTPV----------- 159 (262)
T ss_dssp SSSEEEEEETTTC----------CEEEEEEC-SS--CCCCEEECSSCEEEC-CSSSEEEEECTTTCSEE-----------
T ss_pred eCCEEEEEECccC----------cEEEEEEC-CC--CceEEecCCCEEEEE-CCCCeEEEEcCCCCeEE-----------
Confidence 6899999999873 33555542 22 223333545555555 44678999998887632
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
..+ ....+ ......++.+.|. + +.+++..-.++.|.+.|..+++.+..+......+... .
T Consensus 160 ~~I-~V~~~--------g~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~--------~- 219 (262)
T 3nol_A 160 RTI-TVTAH--------GEELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG--------P- 219 (262)
T ss_dssp EEE-ECEET--------TEECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC--------S-
T ss_pred EEE-EeccC--------CccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc--------c-
Confidence 000 00000 0011234556776 3 5666665578899999999998765553221100000 0
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeC
Q 004293 275 HGRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 275 ~g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
........+.|+|+|+++.|++.+.
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCcCCceEEEEEcCCCCEEEEECC
Confidence 0011124799999999888887775
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.31 E-value=4e-05 Score=80.25 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=123.4
Q ss_pred EeC--CCCCEEE-EEeCCCcEEEEeCCCC----eEEEEEc------cCCCCceEEEEEeeCCCCcEEEEEeCC------C
Q 004293 57 SWN--SKGSLLI-SGSDDTHINVWSYSSR----KLLHSIE------TGHSANVFCTKFVPETSDELVVSGAGD------A 117 (763)
Q Consensus 57 ~fs--p~g~~La-sgs~D~~v~iWd~~~~----~~~~~~~------~~h~~~V~~v~~~p~~~~~~l~s~s~d------g 117 (763)
.++ +++++|+ +|..+++|.|+|+.+. +..+++. .........+...|+ + +++++..+ +
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPG 164 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCC
Confidence 336 7787766 4567889999999755 5666661 001124566788898 6 77777666 7
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecc---cCceeEEEEecCCCCEEEEEe-------------------CCCcEEEE
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCH---TRRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQH 175 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~s~s-------------------~dg~i~iw 175 (763)
.|.+.|..+. +.+..+..- ...-+.+-|+| +.+.+++.. ...+|.+|
T Consensus 165 ~v~vlD~~T~----------~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 165 GILMLDHYSF----------EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp EEEEECTTTC----------CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred eEEEEECCCC----------eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 8999999873 234444311 12345688899 556777764 36899999
Q ss_pred ECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE--eCCCCcEEEEEe------CCCcEEEEeCCC
Q 004293 176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLVGG------SDAFARLYDRRM 247 (763)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~~l~sgs------~Dg~i~iwd~~~ 247 (763)
|+.+.+.. .-+++. . .......+.| +|+ ++++++++ .++.|.+|....
T Consensus 234 D~~~~k~~------------~tI~vg----------~-~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 234 DLRKRKRI------------HSLTLG----------E-ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ETTTTEEE------------EEEESC----------T-TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ECCCCcEe------------eEEecC----------C-CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecC
Confidence 99876421 011110 0 1122334545 997 56666655 567888776654
Q ss_pred CCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 004293 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA 311 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~~ 311 (763)
+. .........+...+....+.-....+........+.+||||++|+++.. .+.|.+||+...
T Consensus 290 g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 290 GK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp TE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred Cc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 22 0000000000000000000000000000113788999999999998887 789999999743
No 237
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00013 Score=70.16 Aligned_cols=211 Identities=13% Similarity=0.127 Sum_probs=126.2
Q ss_pred cccceeecccc--CceEEEEeCCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC
Q 004293 40 LSQERELEGHQ--GCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (763)
Q Consensus 40 ~~~~~~l~gH~--~~V~~l~fsp~g~~Lasgs~D~--~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~ 115 (763)
.+.+.++ .|. .....|.|++ +.++.+.+.+| .|+++|+.+++.+..+... ...+.....+.. +++.+..-.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~-~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWR-DRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeC-CEEEEEEee
Confidence 4566666 464 4467899986 66777777754 8999999999998887322 233333333332 466666667
Q ss_pred CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004293 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 116 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
++.+.++|..+. +.+..+.. ...-..++ +++..+++|- .++.|.++|..+.+.. .
T Consensus 84 ~~~v~v~D~~tl----------~~~~ti~~-~~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~-----------~ 138 (243)
T 3mbr_X 84 NHEGFVYDLATL----------TPRARFRY-PGEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQV-----------G 138 (243)
T ss_dssp SSEEEEEETTTT----------EEEEEEEC-SSCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEE-----------E
T ss_pred CCEEEEEECCcC----------cEEEEEeC-CCCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEE-----------E
Confidence 899999999873 33555542 22234444 4455566554 5789999998887532 0
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCC
Q 004293 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (763)
. +. +.........++.+.+. ++.+++..-.+..|.+.|.++++.+..+......+.... . .
T Consensus 139 ~-I~--------V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~ 199 (243)
T 3mbr_X 139 S-IK--------VTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T 199 (243)
T ss_dssp E-EE--------CEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred E-EE--------EccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence 0 00 00000011234566666 356666555688999999999986655532211000000 0 0
Q ss_pred CCCccceeEEEEcCCCCEEEEEeC
Q 004293 276 GRSSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 276 g~~~~~i~~v~~spdg~~l~~~s~ 299 (763)
.......+.|+++|+++.|++.+.
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcCCceEEEEEcCCCCEEEEECC
Confidence 011224799999998887777765
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.22 E-value=1.3e-05 Score=82.58 Aligned_cols=182 Identities=10% Similarity=0.137 Sum_probs=102.9
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004293 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 134 (763)
+..+..+|. |..++.++.|..|| .+++.+..+ ......+.++...++ + .|..++.+ |..+|.. +.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~--g-~l~v~t~~--l~~~d~~-g~------ 88 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGKD--G-TIYFGSDK--VYAINPD-GT------ 88 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETTT--T-EECCSSCE--EEEECCC-GG------
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEecC--C-cEEEecCc--EEEECCC-Cc------
Confidence 444545565 55667788999999 888876654 333344566666655 4 45555544 8888853 11
Q ss_pred CCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCC
Q 004293 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (763)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (763)
.+..+...........+. + ..++.++.++.|..+|.. ++. .+.... .
T Consensus 89 ----~~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~--------------~~~~~~-----------~ 135 (330)
T 3hxj_A 89 ----EKWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTE--------------KWRFKT-----------K 135 (330)
T ss_dssp ----GGGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCE--------------EEEEEC-----------S
T ss_pred ----EEEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCE--------------EEEEcC-----------C
Confidence 122222222222333333 3 456678888999999987 431 121111 1
Q ss_pred ccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEE
Q 004293 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (763)
Q Consensus 215 ~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l 294 (763)
...+.++...++ + .+.+++.++.|..||.. ++.+..+.. . ...+.++.+.+++..
T Consensus 136 ~~~~~~~~~~~~-g-~l~vgt~~~~l~~~d~~-g~~~~~~~~--------------------~-~~~~~~~~~d~~g~l- 190 (330)
T 3hxj_A 136 KAIYATPIVSED-G-TIYVGSNDNYLYAINPD-GTEKWRFKT--------------------N-DAITSAASIGKDGTI- 190 (330)
T ss_dssp SCCCSCCEECTT-S-CEEEECTTSEEEEECTT-SCEEEEEEC--------------------S-SCCCSCCEECTTCCE-
T ss_pred CceeeeeEEcCC-C-EEEEEcCCCEEEEECCC-CCEeEEEec--------------------C-CCceeeeEEcCCCEE-
Confidence 112344455654 3 47778888999999988 543322210 0 113666777788874
Q ss_pred EEEeCCCeEEEEECCCCC
Q 004293 295 LLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 295 ~~~s~d~~i~iwd~~~~~ 312 (763)
..++ +.|+.|| .++.
T Consensus 191 ~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 191 YFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EEES--SSEEEEC-TTSC
T ss_pred EEEe--CEEEEEC-CCCc
Confidence 4455 8889998 5543
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.20 E-value=5.4e-05 Score=79.26 Aligned_cols=248 Identities=11% Similarity=0.043 Sum_probs=138.4
Q ss_pred ccccCCCcccccccccchhh--hhccccceeec------cc-cCceEEEEeCCCCCEEEEEeCC------CcEEEEeCCC
Q 004293 17 TRHTDTRPDVNHSLQMHSSL--VRRLSQERELE------GH-QGCVNAISWNSKGSLLISGSDD------THINVWSYSS 81 (763)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~------gH-~~~V~~l~fsp~g~~Lasgs~D------~~v~iWd~~~ 81 (763)
+|.+-..+-...+|.+.+.. -++.++.++++ .. ...-..+..+|+| +++++..+ +.|.+.|.++
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 34443334445566666632 33446666663 11 1245567889999 77776655 7899999999
Q ss_pred CeEEEEEccCCC--CceEEEEEeeCCCCcEEEEEe-------------------CCCcEEEEECCCCCCCCCCCCCCCCc
Q 004293 82 RKLLHSIETGHS--ANVFCTKFVPETSDELVVSGA-------------------GDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 82 ~~~~~~~~~~h~--~~V~~v~~~p~~~~~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
.+.+.++..+-. .--..+.|+|+ ++.+++.. ...+|.+||+.+. +.+
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------k~~ 241 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------KRI 241 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------EEE
T ss_pred CeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----------cEe
Confidence 999998843322 22345888999 67888874 3789999999863 223
Q ss_pred eeeec--ccCceeEEEE--ecCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee-ccC
Q 004293 141 ALYQC--HTRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS-LAD 210 (763)
Q Consensus 141 ~~~~~--h~~~v~~l~~--sp~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 210 (763)
..+.- .......|.| +|++...++++- .+++|.+|....++. .....+++....... +..
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----------~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----------NAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----------EEEEEEEECCEECCSSCCG
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----------eEEEEEeCCCccccccccc
Confidence 34432 1123455666 995544444444 677888877643220 111222222111000 000
Q ss_pred CC----CCccceEEEEEeCCCCcEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc-cc--cC--CCC-Cc
Q 004293 211 PP----KQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM-HL--SE--HGR-SS 279 (763)
Q Consensus 211 ~~----~~~~~v~~i~~~p~~~~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~g~-~~ 279 (763)
.+ +.......|.++|+ +++|+++. ..+.|.+||+........ +...... .+ .. .|. -.
T Consensus 312 ~~~~f~~~~~~pa~I~lS~D-GrfLYVSnrg~d~VavfdV~d~~~~~l----------v~~I~tGG~~~~~~~~~G~~~~ 380 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLD-DKFLYLSLWGIGEVRQYDISNPFKPVL----------TGKVKLGGIFHRADHPAGHKLT 380 (462)
T ss_dssp GGGGGTEECCCCCCEEECTT-SCEEEEEETTTTEEEEEECSSTTSCEE----------EEEEECBTTTTCBCCTTSCCCC
T ss_pred cccccccCCCceeEEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEE----------EEEEEeCCeeccccccccccCC
Confidence 00 00134678999998 56666665 468999999863321110 0000000 00 00 000 00
Q ss_pred cceeEEEEcCCCCEEEEEe
Q 004293 280 LHLTHVTFSPNGEEVLLSY 298 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s 298 (763)
..-..++++|||++|+++.
T Consensus 381 ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEcCCCCEEEEEc
Confidence 0246689999999999988
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.19 E-value=4.1e-05 Score=74.27 Aligned_cols=210 Identities=7% Similarity=-0.056 Sum_probs=125.2
Q ss_pred cccceeecccc--CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004293 40 LSQERELEGHQ--GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 40 ~~~~~~l~gH~--~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
.+.+.++ .|. .....|.|+ ++.++++.+.+|.|+++|+++++.+..+ ......-..+++.. +.+.+..-.++
T Consensus 43 ~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g---~~Ly~ltw~~~ 116 (268)
T 3nok_A 43 AHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG---ERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS---SCEEEEESSSC
T ss_pred eEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC---CEEEEEEccCC
Confidence 3566666 343 335789997 4677788889999999999999887776 33221123355543 46666666799
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
.+.+||..+. +.+..+.. ...-..++ +++ ..|+.+..++.|.++|..+.+.. ..+
T Consensus 117 ~v~V~D~~Tl----------~~~~ti~~-~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~-----------~~I 171 (268)
T 3nok_A 117 LLFTWSGMPP----------QRERTTRY-SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALV-----------GAV 171 (268)
T ss_dssp EEEEEETTTT----------EEEEEEEC-SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEE-----------EEE
T ss_pred EEEEEECCcC----------cEEEEEeC-CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEE-----------EEE
Confidence 9999999873 33455542 22234455 434 44445556889999998887632 000
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCC
Q 004293 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (763)
. +.........++.+.|. + +.+++..-.+..|.+.|..+++.+..+.... +.+........
T Consensus 172 -~--------V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~--------L~~~~~~~~~~ 232 (268)
T 3nok_A 172 -Q--------VKLRGQPVELINELECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASA--------LTRAVAGQVTN 232 (268)
T ss_dssp -E--------CEETTEECCCEEEEEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHH--------HHHHHTTTCCC
T ss_pred -E--------eCCCCcccccccccEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCC--------CcccccccccC
Confidence 0 00011112245667777 3 5666555578899999999998665543210 00000000001
Q ss_pred CccceeEEEEcCCCCEEEEEeC
Q 004293 278 SSLHLTHVTFSPNGEEVLLSYS 299 (763)
Q Consensus 278 ~~~~i~~v~~spdg~~l~~~s~ 299 (763)
.....+.|+|+|+++.|++.+.
T Consensus 233 ~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 233 PEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCCEEEEEECTTTCCEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEeCC
Confidence 1224799999998777776654
No 241
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.12 E-value=0.0017 Score=63.38 Aligned_cols=226 Identities=12% Similarity=0.152 Sum_probs=135.1
Q ss_pred eeeccccCceEEEEeCCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004293 44 RELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~L-asgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
+.|.|-.+.+..|+|+|++..| ++...++.|...|.. ++.+..+..+-......|++.++ +.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence 4566766789999999976655 457778899999998 88887774333356888999887 6666766677889999
Q ss_pred ECCCCCCCCCCCCCCCCceee------ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004293 123 NLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 196 (763)
++..... . ..+... .......-.|+|+|.+ +.|+++.+.....+|.+. +... ......
T Consensus 97 ~v~~~~~-i------~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~-------~~~l~i 160 (255)
T 3qqz_A 97 SLTPNSE-V------KILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLS-------SNELHI 160 (255)
T ss_dssp EECTTCC-E------EEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEE-STTC-------SSCCEE
T ss_pred EcCCCCe-e------eeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEc-cccc-------CCceee
Confidence 8875321 0 001111 1234456899999955 444455554455555544 1100 000111
Q ss_pred EEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCC
Q 004293 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
+.+.. + ........+.+++++|..+.+++.+.....+.++|... +.+..+.- .+.... -.
T Consensus 161 ~~~~~------~-~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L-----------~~g~~~-l~ 220 (255)
T 3qqz_A 161 SKDKA------L-QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSL-----------TKGSRG-LS 220 (255)
T ss_dssp EECHH------H-HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEEC-----------STTGGG-CS
T ss_pred ecchh------h-ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEc-----------CCccCC-cc
Confidence 11100 0 00011234689999998888888888889999999763 32222110 000000 00
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004293 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
+.-..-..|+|.++|+ |+..+.-+.++.|.-.
T Consensus 221 ~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 221 HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred cccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 1111478899999998 5666777788887544
No 242
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.05 E-value=0.0012 Score=67.22 Aligned_cols=243 Identities=9% Similarity=0.001 Sum_probs=133.5
Q ss_pred cccceeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--
Q 004293 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-- 117 (763)
Q Consensus 40 ~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-- 117 (763)
.+.+..|... .....++|+++|+++++-..++.|..||..+. ....+ .....+..+++.++ ++++++.....
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCCcc
Confidence 4455555433 46789999999998888778899999998764 33333 22356889999998 67666654433
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 197 (763)
.|..+|...+.. ..+..+ ........++..+ ++..+++-..++.|+++|...++. .+
T Consensus 96 ~v~~~d~~~g~~--------~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~-------------~v 152 (306)
T 2p4o_A 96 PVVSLVKSDGTV--------ETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-------------SI 152 (306)
T ss_dssp EEEEEECTTSCE--------EEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-------------EE
T ss_pred eEEEEcCCCCeE--------EEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE-------------eE
Confidence 366666554221 111111 1122334555544 445555555688899998765320 00
Q ss_pred EecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC-CCCCcccCCCCCCCCcccccccccccCCC
Q 004293 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (763)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (763)
+.... ... ...........+.+ +|+++.++++-...+.|..||+.. +. +.. ...+.. .
T Consensus 153 ~~~~~-~~~-~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~~~----------~~~~~~--~---- 211 (306)
T 2p4o_A 153 WLEHP-MLA-RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-PGE----------PEIFVE--Q---- 211 (306)
T ss_dssp EEECG-GGS-CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-BCC----------CEEEEE--S----
T ss_pred EEECC-ccc-cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-CCc----------cEEEec--c----
Confidence 00000 000 00000111234455 776444556666778999999874 21 100 011100 0
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccce-EeecC-CCCeeeeec---cCCCCc
Q 004293 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVG-DASKIMSFT---PTLNGL 336 (763)
Q Consensus 277 ~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~---p~~~~~ 336 (763)
.....++++++|++.++....+.|.+|+.. +..... ....+ ..+..++|. |+...+
T Consensus 212 ---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~L 272 (306)
T 2p4o_A 212 ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAI 272 (306)
T ss_dssp ---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEE
T ss_pred ---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEE
Confidence 025568999999876666678899999875 332111 11222 445667777 554444
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.98 E-value=0.0007 Score=76.98 Aligned_cols=64 Identities=6% Similarity=-0.013 Sum_probs=51.2
Q ss_pred EecCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004293 644 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 644 sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
....+|.|+.||..||+.+-....+. .+....+...+.+++.++.|+.|++||..+++.+..+.
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 44567999999999999987776543 34445566678889999999999999999999887664
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.98 E-value=0.012 Score=68.66 Aligned_cols=205 Identities=10% Similarity=0.065 Sum_probs=120.9
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004293 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
|.++...++|.+++ |..++-|..||..+++............|.++...++ +.+.+ ++.++-|.+||..+..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~lwi-gt~~~Gl~~~~~~~~~---- 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TRIWV-ATEGAGLFLINPKTKE---- 246 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TEEEE-EEBSSCEEEEETTTTE----
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CCEEE-EECCCCeEEEeCCCCe----
Confidence 88888888887665 5655568999988776543211223467888888887 45544 4544458889987522
Q ss_pred CCCCCCCceeee--------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004293 133 DDNAITPSALYQ--------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 133 ~~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
...+. -....|.+|...+ ++. |+.|+.+ -|.+||..+.+.. .+.....
T Consensus 247 -------~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~-------------~~~~~~~- 302 (795)
T 4a2l_A 247 -------IKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFA-------------SYSSNPV- 302 (795)
T ss_dssp -------EEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEE-------------EECCCTT-
T ss_pred -------EEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEE-------------EEecCCC-
Confidence 11111 1235689998877 334 4445555 5889997665311 0000000
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeE
Q 004293 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 284 (763)
....-....|.++..+++ + .|-+|+.++-|..|+..+.... .+ ..... ..+.....|.+
T Consensus 303 ----~~~~l~~~~i~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~~~-~~-------------~~~~~-~~~l~~~~V~~ 361 (795)
T 4a2l_A 303 ----ENGSLSQRSVRSIFMDSQ-G-GMWLGTYFGGLNYYHPIRNRFK-NI-------------RNIPY-KNSLSDNVVSC 361 (795)
T ss_dssp ----STTSCSSSCEEEEEECTT-S-CEEEEESSSCEEEECGGGGSSE-EE-------------CCCTT-SSSCSCSSEEE
T ss_pred ----CCCCCCCCcEEEEEEeCC-c-CEEEEECCCCeEEeCCCcccce-EE-------------cCCCC-CCCCCCCeeEE
Confidence 000112356899999886 3 4667888888999987654211 00 00000 01112225999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 285 VTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 285 v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+...++|. |..|+.++-|..|+..++
T Consensus 362 i~~d~~g~-lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 362 IVEDKDKN-LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp EEECTTSC-EEEEESSSCEEEECTTTC
T ss_pred EEECCCCC-EEEEECCCCeEEEcCCCC
Confidence 99999887 566777777888887663
No 245
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.97 E-value=0.0059 Score=63.18 Aligned_cols=223 Identities=8% Similarity=0.027 Sum_probs=134.8
Q ss_pred CceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..+..++|++.+. ++++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~- 149 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH- 149 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCc-
Confidence 3478899997554 5555567788999998876544333 2333456789999863 5666776777899999987421
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004293 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
....+.........|++.|.++.++++-... +.|..+++...... .+
T Consensus 150 ---------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-----------------------~~ 197 (349)
T 3v64_C 150 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-----------------------II 197 (349)
T ss_dssp ---------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----------------------ES
T ss_pred ---------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-----------------------EE
Confidence 0112223345678999999777777776666 78888887653211 00
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004293 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
. .......+.++++|+++.++++-...+.|..+|+..... ..+ .... ......+++
T Consensus 198 ~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~-------------~~~~-------~~~P~giav- 253 (349)
T 3v64_C 198 A--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------ISQG-------LPHPFAITV- 253 (349)
T ss_dssp C--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-------------ECSS-------CSSEEEEEE-
T ss_pred E--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEE-------------EeCC-------CCCceEEEE-
Confidence 0 011235689999997665666666678899999864221 111 0000 013567777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004293 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (763)
Q Consensus 289 pdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (763)
..+..+++-...+.|..++..+++........ ..+.....++|.
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~ 298 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ 298 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGG
T ss_pred ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccc
Confidence 34444455556889999987666544333322 233333444553
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.95 E-value=0.0012 Score=75.05 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=39.5
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcce-EEEEeeCCCC-eEEEEe
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG 688 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V-~~v~~sp~~~-~laS~s 688 (763)
+...+.+|+.|+.|+.+++||.++|+++..++...+.. .-+.+..+++ +++.++
T Consensus 465 ~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 44578899999999999999999999999987664322 3344455665 555444
No 247
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.91 E-value=0.0038 Score=65.65 Aligned_cols=223 Identities=9% Similarity=0.054 Sum_probs=135.1
Q ss_pred CceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 51 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..+..++|.+.+ .++++-...+.|..+++..+.....+ .........+++.+.. +.++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCS-
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCc-
Confidence 457889999754 45556567788999998876544444 3333456788999864 5666666667888888876321
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004293 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
....+.........|++.|.++.++++-... +.|..+++..... ..+..
T Consensus 193 ---------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~--------- 242 (386)
T 3v65_B 193 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD--------- 242 (386)
T ss_dssp ---------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred ---------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE---------
Confidence 0112223345678999999777777776555 7888888765321 11110
Q ss_pred cCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004293 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 209 ~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
......+.|+|+|+++.++++-+..+.|..+|+..... ..+ .. .+. .....|++
T Consensus 243 ----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~-------------~~-----~~~--~~P~giav- 296 (386)
T 3v65_B 243 ----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------IS-----QGL--PHPFAITV- 296 (386)
T ss_dssp ----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEE-------------EC-----SSC--SSEEEEEE-
T ss_pred ----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEE-------------EE-----CCC--CCceEEEE-
Confidence 11234689999987665666666678899999864221 111 00 001 13567777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004293 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (763)
Q Consensus 289 pdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (763)
..+..+++-...+.|..++..++......... ..+.....++|.
T Consensus 297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~ 341 (386)
T 3v65_B 297 FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQ 341 (386)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGG
T ss_pred ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEchh
Confidence 34444555556889999997666544443332 233334445554
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.90 E-value=0.00012 Score=79.53 Aligned_cols=169 Identities=5% Similarity=-0.036 Sum_probs=108.8
Q ss_pred CceEEEEe-C-CCCCEEEEEe------------------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEE
Q 004293 51 GCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV 110 (763)
Q Consensus 51 ~~V~~l~f-s-p~g~~Lasgs------------------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l 110 (763)
.....+++ + |++++++.++ .++.+.+.|.++.+.+.++..+- ....++++|+ ++++
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spd--Gk~~ 209 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYE--GKWA 209 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSS--SSEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCC--CCEE
Confidence 45788998 5 9999998884 34579999999999888884432 4577889999 7888
Q ss_pred EEEeCCC--------------------------------------cEEEEECCCCCCCCCCCCCCCC-ceeeecccCcee
Q 004293 111 VSGAGDA--------------------------------------EVRLFNLSRFSGRGLDDNAITP-SALYQCHTRRVK 151 (763)
Q Consensus 111 ~s~s~dg--------------------------------------~I~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~ 151 (763)
++.+.+. .|.+.|..+..+ .. +..+. -.....
T Consensus 210 ~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~--------~~~~~~Ip-vg~~Ph 280 (595)
T 1fwx_A 210 FSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS--------SLFTRYIP-IANNPH 280 (595)
T ss_dssp EEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC--------CSSEEEEE-EESSCC
T ss_pred EEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC--------ceeEEEEe-cCCCce
Confidence 8877553 245555543110 11 22332 234578
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEE
Q 004293 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 231 (763)
Q Consensus 152 ~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l 231 (763)
++.++|++..+++++..+.+|.++|+.+.+.... ... .......... .-......++|+|+ |..+
T Consensus 281 Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~-~~l-~~~~~v~~~v------------~vG~gP~h~aF~~d-G~aY 345 (595)
T 1fwx_A 281 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY-ENA-DPRSAVVAEP------------ELGLGPLHTAFDGR-GNAY 345 (595)
T ss_dssp CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH-SCC-CGGGGEEECC------------BCCSCEEEEEECTT-SEEE
T ss_pred EEEEcCCCCEEEEeCCCCCeEEEEECcccccccc-ccc-CcccceEEEc------------CCCCCcceEEECCC-CeEE
Confidence 8999996655666666789999999986421000 000 0000011111 11234678999998 5666
Q ss_pred EEEeCCCcEEEEeCCC
Q 004293 232 LVGGSDAFARLYDRRM 247 (763)
Q Consensus 232 ~sgs~Dg~i~iwd~~~ 247 (763)
++...|+.|.+||+..
T Consensus 346 ~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 346 TSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEETTTTEEEEEEHHH
T ss_pred EEEecCCcEEEEEhhH
Confidence 7778899999999876
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.88 E-value=0.022 Score=66.28 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=125.3
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccC-------CCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------HSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
...|.++...++|.+++. +.++-|.+||..+++...-. .. ....|.++...++ +.+.+ |+.+ -|.+|
T Consensus 214 ~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYL-HSPSNPKSISSNYIRSLAMDSQ--NRLWI-GTFN-DLNIY 287 (795)
T ss_dssp CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEEC-CCTTCTTSCSCSBEEEEEECTT--SCEEE-EESS-CEEEE
T ss_pred CCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEee-cCCCCccccCCCeEEEEEEcCC--CCEEE-EeCC-hhheE
Confidence 456888888877876654 44445889998877654322 21 1356899988877 55544 4445 58889
Q ss_pred ECCCCCCCCCCCCCCCCceeee--------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004293 123 NLSRFSGRGLDDNAITPSALYQ--------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 194 (763)
|..... ...+. -....|.+|...+++ .|..|+.++-|..|+.......
T Consensus 288 ~~~~~~-----------~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~----------- 343 (795)
T 4a2l_A 288 HEGTDS-----------FASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFK----------- 343 (795)
T ss_dssp ETTTTE-----------EEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSE-----------
T ss_pred cCCCCe-----------EEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccce-----------
Confidence 877532 11111 123568999887733 4556778888999987654311
Q ss_pred eEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccC
Q 004293 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (763)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (763)
.+..... ...-....|.++...++ + .|-+|+.++-|..||..+++... +.......
T Consensus 344 --~~~~~~~------~~~l~~~~V~~i~~d~~-g-~lWiGt~~~Gl~~~~~~~~~~~~--------------~~~~~~~~ 399 (795)
T 4a2l_A 344 --NIRNIPY------KNSLSDNVVSCIVEDKD-K-NLWIGTNDGGLNLYNPITQRFTS--------------YTLQEDES 399 (795)
T ss_dssp --EECCCTT------SSSCSCSSEEEEEECTT-S-CEEEEESSSCEEEECTTTCCEEE--------------ECCC----
T ss_pred --EEcCCCC------CCCCCCCeeEEEEECCC-C-CEEEEECCCCeEEEcCCCCcEEE--------------EecCCCCc
Confidence 0000000 00012345889988886 4 46668888889999987653111 10000000
Q ss_pred C-CCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 275 H-GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 275 ~-g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
. +.....|.+++..++|+.|.+|+.++-|.+||..++
T Consensus 400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 0 111225999999999985677787778999998774
No 250
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.85 E-value=0.01 Score=60.39 Aligned_cols=226 Identities=7% Similarity=-0.037 Sum_probs=131.4
Q ss_pred cCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCC---CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004293 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 50 ~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
...+.+++|++.+. ++++-..++.|..+++.+ +.....+.......+..+++.+.. +.++++-...+.|.+.++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCC
Confidence 34578999998654 555666678999999876 122222212233456889998763 5666666778899999987
Q ss_pred CCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
... ...+ .........+++.|.++.++++.... +.|...++..... ..+..
T Consensus 108 g~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------~~~~~---- 160 (316)
T 1ijq_A 108 GVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---- 160 (316)
T ss_dssp SSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC----
T ss_pred CCc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------EEEEE----
Confidence 421 2222 22345678999999776666665443 6788888754320 11110
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
......+.++++|+++.++++-...+.|..+|+... ....+. .. .+.. ....
T Consensus 161 ---------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~-------------~~----~~~~-~~P~ 212 (316)
T 1ijq_A 161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTIL-------------ED----EKRL-AHPF 212 (316)
T ss_dssp ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE-------------EC----TTTT-SSEE
T ss_pred ---------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEe-------------ec----CCcc-CCcE
Confidence 112356899999976555556566789999998742 111110 00 0000 1256
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004293 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (763)
.+++. .+..+++-...+.|..++..+++........ ..+.....++|.
T Consensus 213 giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~ 261 (316)
T 1ijq_A 213 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 261 (316)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred EEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccc
Confidence 67774 3455555556889999998776543333222 233344445543
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.84 E-value=0.0097 Score=61.55 Aligned_cols=201 Identities=8% Similarity=0.025 Sum_probs=125.7
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
.+..+|.+..+++ +|+.+ ....|+..++........+ . ....+..++|++.. +.++++-...+.|..+++....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~- 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN- 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCC-
Confidence 3445676766644 44433 3356888888766554444 3 33458899999874 5566665667889999987522
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004293 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
..............|++.+.++.++++-...+.|.+.++..... ..+..
T Consensus 107 ---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~---------- 155 (349)
T 3v64_C 107 ---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW---------- 155 (349)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC----------
T ss_pred ---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe----------
Confidence 11122222345678999986777777877788999999865421 11110
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEc
Q 004293 210 DPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (763)
Q Consensus 210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~s 288 (763)
........++++|.++.++++-... +.|..+++.... ...+ .. .+ -...+.|+|+
T Consensus 156 ---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~-------------~~-----~~--~~~PnGla~d 211 (349)
T 3v64_C 156 ---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRII-------------AD-----TH--LFWPNGLTID 211 (349)
T ss_dssp ---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEES-------------CC-----SS--CSCEEEEEEE
T ss_pred ---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEE-------------EE-----CC--CCCcceEEEe
Confidence 1123468999999766666665555 788888876422 1111 00 00 1137889999
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCC
Q 004293 289 PNGEEVLLSYS-GEHVYLMDVNHA 311 (763)
Q Consensus 289 pdg~~l~~~s~-d~~i~iwd~~~~ 311 (763)
|++..|+.+.. .+.|..+++...
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCEEEEEECCCCEEEEEeCCCC
Confidence 97777776654 789999998763
No 252
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.71 E-value=0.054 Score=54.67 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=94.0
Q ss_pred CCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004293 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 81 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
..+.+..+. . ......++|.++ ++++++-..++.|..||.... ....+ .....+..|++.++ +
T Consensus 21 ~~~~~~~~p-~-~~~pegia~~~~--g~lyv~d~~~~~I~~~d~~g~-----------~~~~~-~~~~~p~gia~~~d-G 83 (306)
T 2p4o_A 21 PAKIITSFP-V-NTFLENLASAPD--GTIFVTNHEVGEIVSITPDGN-----------QQIHA-TVEGKVSGLAFTSN-G 83 (306)
T ss_dssp CEEEEEEEC-T-TCCEEEEEECTT--SCEEEEETTTTEEEEECTTCC-----------EEEEE-ECSSEEEEEEECTT-S
T ss_pred CceEeEeCC-C-CCCcceEEECCC--CCEEEEeCCCCeEEEECCCCc-----------eEEEE-eCCCCceeEEEcCC-C
Confidence 345556662 2 256789999998 677777778899999987641 11222 23456889999994 4
Q ss_pred CEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004293 161 HVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (763)
Q Consensus 161 ~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg 238 (763)
+++++..... .|..+|..+++. ..+.... . ......++..+. +..+++-..++
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~------------~~~~~~~-----------~-~~~~~g~~~~~~-~~~~v~d~~~g 138 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTV------------ETLLTLP-----------D-AIFLNGITPLSD-TQYLTADSYRG 138 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCE------------EEEEECT-----------T-CSCEEEEEESSS-SEEEEEETTTT
T ss_pred cEEEEeccCCcceEEEEcCCCCeE------------EEEEeCC-----------C-ccccCcccccCC-CcEEEEECCCC
Confidence 6665544322 466677665541 1111110 0 112234444443 44455444688
Q ss_pred cEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004293 239 FARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 239 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd~~~ 310 (763)
.|.++|...+. .+...... .... ....+.. ..+.+ +|++++|+.+.. .+.|..|++..
T Consensus 139 ~i~~~d~~~~~~~v~~~~~~------~~~~----~~~~~~~--~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 139 AIWLIDVVQPSGSIWLEHPM------LARS----NSESVFP--AANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp EEEEEETTTTEEEEEEECGG------GSCS----STTCCSC--SEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred eEEEEeCCCCcEeEEEECCc------cccc----cccCCCC--cCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 89999876531 01000000 0000 0000001 24555 788887766654 77888888764
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.70 E-value=0.008 Score=66.74 Aligned_cols=54 Identities=7% Similarity=-0.074 Sum_probs=37.8
Q ss_pred CCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEEeCC
Q 004293 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSGID 690 (763)
Q Consensus 637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~s~D 690 (763)
..+..|+.|+.||.|+.||.+||+++-.++..... ..-+.+.++++ ++++.+.+
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence 35677888999999999999999999988754322 22344667776 44444433
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.68 E-value=0.0009 Score=65.65 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=113.9
Q ss_pred CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeec-ccCceeEEEEecC
Q 004293 82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVG 158 (763)
Q Consensus 82 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~ 158 (763)
.+.+.++..+.......+.|+|+ +.++++.+. ++.|+++|+.+++ .+..+.- .......+++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~----------v~~~i~l~~~~fgeGi~~~-- 74 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGK----------VENIHKMDDSYFGEGLTLL-- 74 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCC----------EEEEEECCTTCCEEEEEEE--
T ss_pred ceEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCC----------EEEEEecCCCcceEEEEEe--
Confidence 34566663222234689999997 566666554 6899999999743 2333321 11122345554
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004293 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (763)
Q Consensus 159 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg 238 (763)
++.+.++.-.++.+.++|..+.+.. .. +...... ...++++ ++.++++..++
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~--------------~~--------i~~g~~~-----g~glt~D-g~~l~vs~gs~ 126 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNI--------------KN--------FTHQMKD-----GWGLATD-GKILYGSDGTS 126 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEE--------------EE--------EECCSSS-----CCEEEEC-SSSEEEECSSS
T ss_pred CCEEEEEEecCCEEEEEECCCCcEE--------------EE--------EECCCCC-----eEEEEEC-CCEEEEECCCC
Confidence 4456666667899999999876522 11 1100001 1224455 34555556788
Q ss_pred cEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEe
Q 004293 239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (763)
Q Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~ 318 (763)
.|.++|..+.+.+..+.... .+..-..++.+.|. +|+..+....++.|.+.|..+++......
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 99999999876554432110 01111126778888 77544444458899999999977544433
Q ss_pred ecC-------------CCCeeeeeccCCCCc
Q 004293 319 TVG-------------DASKIMSFTPTLNGL 336 (763)
Q Consensus 319 ~~~-------------~~~~~~~~~p~~~~~ 336 (763)
..+ .....++|+|+.+.+
T Consensus 190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp CHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred CCCcccccccccccccCceEEEEEcCCCCEE
Confidence 221 244678888875543
No 255
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.66 E-value=0.0082 Score=63.10 Aligned_cols=198 Identities=8% Similarity=0.032 Sum_probs=121.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004293 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~ 132 (763)
-+|.+..+.+ +|+.+ ....|+..++........+ . ....+..++|.+.. +.++++-...+.|..+++....
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~---- 149 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN---- 149 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCC----
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCC----
Confidence 4455555533 44433 3357899998876554444 2 33468899999873 5566666677889999987521
Q ss_pred CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004293 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (763)
....+.........|++.+.++.++++-...+.|.+.++..... ..+..
T Consensus 150 ------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~------------- 198 (386)
T 3v65_B 150 ------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW------------- 198 (386)
T ss_dssp ------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC-------------
T ss_pred ------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec-------------
Confidence 01112222345678899886777777777778888888764321 11110
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004293 213 KQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 213 ~~~~~v~~i~~~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
........++++|.++.++++-... +.|..+++..... ..+ .. .+. ...+.|+|+|++
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~-------------~~-----~~~--~~PnGlavd~~~ 257 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RII-------------AD-----THL--FWPNGLTIDYAG 257 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE-------------EC-----SSC--SCEEEEEEEGGG
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEE-------------EE-----CCC--CCeeeEEEeCCC
Confidence 1123568999999766555555555 6788888764221 110 00 001 136889999877
Q ss_pred CEEEEEeC-CCeEEEEECCCC
Q 004293 292 EEVLLSYS-GEHVYLMDVNHA 311 (763)
Q Consensus 292 ~~l~~~s~-d~~i~iwd~~~~ 311 (763)
..|+.+.. .+.|..+++...
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 258 RRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TEEEEEETTTTEEEEECTTSC
T ss_pred CEEEEEECCCCEEEEEeCCCC
Confidence 77766654 788999998753
No 256
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.62 E-value=0.032 Score=58.85 Aligned_cols=227 Identities=7% Similarity=-0.017 Sum_probs=131.8
Q ss_pred ccCceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004293 49 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 49 H~~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
....+..|+|++.+. +.++-...+.|..+++... .....+ .........+++.+.. +.++++-...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence 345688999998555 4455556788999998752 222233 3344567899999853 56667767788899998
Q ss_pred CCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004293 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
+.... ....+.........|++.|.++.++++-.. .+.|...++..... ..+..
T Consensus 188 ~~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~~~~--- 242 (400)
T 3p5b_L 188 TKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT--- 242 (400)
T ss_dssp TTTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------EEEEC---
T ss_pred CCCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------EEEEE---
Confidence 87421 112222234557899999977667666533 47888888765431 11110
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004293 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i 282 (763)
......+.|+++|+++.++++=...+.|..+|+.... ...+. .. .+.-. ..
T Consensus 243 ----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~-------------~~----~~~l~-~P 293 (400)
T 3p5b_L 243 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-------------ED----EKRLA-HP 293 (400)
T ss_dssp ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEE-------------EC----SSTTS-SE
T ss_pred ----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEE-------------eC----CCCCC-CC
Confidence 1124568999998765555555567889999986432 11110 00 00001 24
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004293 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (763)
Q Consensus 283 ~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (763)
.+|++. .+..+++-...+.|..+|..++......... ..+.....++|.
T Consensus 294 ~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~ 343 (400)
T 3p5b_L 294 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 343 (400)
T ss_dssp EEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGG
T ss_pred EEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeec
Confidence 566663 3344445556788999997776544333322 223334445553
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.61 E-value=0.0049 Score=62.99 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=113.9
Q ss_pred CceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEc---cC-CCCceEEEEEee-CCCCcEEEEEeC---------
Q 004293 51 GCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE---TG-HSANVFCTKFVP-ETSDELVVSGAG--------- 115 (763)
Q Consensus 51 ~~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~---~~-h~~~V~~v~~~p-~~~~~~l~s~s~--------- 115 (763)
..+..+++.+ +|+++++ ...+.|..+|..+++. ..+. .+ .......+++.| + +++.++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp CCEEEEEEETTTTEEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHH
T ss_pred CCCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCC--CEEEEECCcccccccccc
Confidence 3578999998 6665554 4445588899876542 2221 11 113478899999 7 677776432
Q ss_pred --------CCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004293 116 --------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (763)
Q Consensus 116 --------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 187 (763)
++.|..||...+. ...+.........|+++|++..++++-...+.|.+|++.....-
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---- 220 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---- 220 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----
T ss_pred eehcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----
Confidence 3668888876421 22222223456789999944335555566789999998753210
Q ss_pred CCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC----------CCcEEEEeCCCCCCCcccCCC
Q 004293 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKR 257 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~----------Dg~i~iwd~~~~~~~~~~~~~ 257 (763)
....+. ..+ . ...++++++ ++++++... .+.|..+|.. ++.+..+..+
T Consensus 221 -----~~~~~~-----------~~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~ 278 (322)
T 2fp8_A 221 -----TAEVLV-----------KIP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP 278 (322)
T ss_dssp -----CEEEEE-----------ECS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC
T ss_pred -----ccceEE-----------eCC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC
Confidence 001111 111 1 567899997 566555544 4668888764 4332222110
Q ss_pred CCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
.|..-..++.+++ .+++..++....+.|..+++...
T Consensus 279 -----------------~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 279 -----------------PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp -----------------TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred -----------------CCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 1110113667776 35655555556889999998753
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.61 E-value=0.00015 Score=78.81 Aligned_cols=222 Identities=12% Similarity=0.135 Sum_probs=125.0
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeEEEEEccCCCCceEEEEE-e-eCCCCcEEEEEe------------------CCCc
Q 004293 60 SKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAE 118 (763)
Q Consensus 60 p~g~~Lasgs-~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~-~-p~~~~~~l~s~s------------------~dg~ 118 (763)
+||++|.... .+..|.+.|+.+.++...+.......+..+++ . |+ +.+++.++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCce
Confidence 3788777655 45679999999999888542233456888888 4 88 67777774 2457
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---------------cEEEEECCCCCCC
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDFRQGSSC 183 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg---------------~i~iwd~~~~~~~ 183 (763)
+.+.|..+. +....+.- .+....++++|+ +.++++.+.+. .|.+.|.......
T Consensus 177 vtvID~~t~----------~v~~qI~V-gg~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 177 FTAVDADKW----------EVAWQVLV-SGNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EEEEETTTT----------EEEEEEEE-SSCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEECCCC----------eEEEEEEe-CCCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 888888862 22333331 124567889995 56666666442 3666665432211
Q ss_pred CCCCCCCcccceEEEecCC--Cce--eeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCC
Q 004293 184 PPAGSSHQECRNILLDLRC--GAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~ 259 (763)
........-....++|... +.. ..+.. .....++.++|++...++++..+..|.++|+.+.+... .....
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~ 318 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENAD 318 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCC
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccC
Confidence 0000000001234444443 111 01100 12345789999854445555578999999998642110 00000
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~ 310 (763)
+..++.. .-.-+.....++|+|+| ++++.. .|+.|..||+..
T Consensus 319 ~~~~v~~--------~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 319 PRSAVVA--------EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGGEEE--------CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred cccceEE--------EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 0000000 00111247789999999 666555 499999999977
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.58 E-value=0.0018 Score=62.81 Aligned_cols=192 Identities=11% Similarity=0.100 Sum_probs=110.3
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004293 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
+.+.++......-...+.|+ + +.++.+.+.+| .|+++|+.+++ .+..+.- ..........+.+.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgk----------v~~~~~l-~~~~FgeGit~~g~ 97 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGK----------TLQQIEL-GKRYFGEGISDWKD 97 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCC----------EEEEEEC-CTTCCEEEEEEETT
T ss_pred EEEEEecCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCc----------EEEEEec-CCccceeEEEEeCC
Confidence 34556632233445889998 5 67888888776 89999999743 2333322 23343333333344
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004293 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
.+.+..-.++.+.+||..+.+... .+.. .. ....+.++ +..|+.+..++.|
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~----------------------ti~~-~~-----eG~glt~d-g~~L~~SdGs~~i 148 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVR----------------------SFNY-DG-----EGWGLTHN-DQYLIMSDGTPVL 148 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEE----------------------EEEC-SS-----CCCCEEEC-SSCEEECCSSSEE
T ss_pred EEEEEEeeCCEEEEEECccCcEEE----------------------EEEC-CC-----CceEEecC-CCEEEEECCCCeE
Confidence 566566678999999998876320 0100 01 11123344 3456555567889
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeec
Q 004293 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~ 320 (763)
.++|..+.+.+..+.... .+..-..++.+.|. +|+..+....++.|.+.|..+++........
T Consensus 149 ~~iDp~T~~v~~~I~V~~----------------~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 149 RFLDPESLTPVRTITVTA----------------HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp EEECTTTCSEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred EEEcCCCCeEEEEEEecc----------------CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 999999887554432110 11111135667776 6764444445889999999997644333221
Q ss_pred ------------CCCCeeeeeccCCC
Q 004293 321 ------------GDASKIMSFTPTLN 334 (763)
Q Consensus 321 ------------~~~~~~~~~~p~~~ 334 (763)
....+.+||+|..+
T Consensus 212 ~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 212 GILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp TGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred cCccccccccCcCCceEEEEEcCCCC
Confidence 22445677777543
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.56 E-value=0.035 Score=61.58 Aligned_cols=61 Identities=10% Similarity=-0.088 Sum_probs=46.4
Q ss_pred CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004293 647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 647 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
.+|.|+.||..||+.+-.+.... .+.+..+...+.+++.++.|+.|+.||.++++.+..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 57899999999999988776432 23333344456677778999999999999999887664
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.56 E-value=0.0073 Score=58.52 Aligned_cols=190 Identities=8% Similarity=0.017 Sum_probs=113.4
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCE
Q 004293 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 162 (763)
+.+.++...-......+.|+. +.++++.+.+|.|+++|+.+++ .+..+ -..........+.+..+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgk----------v~~~~--l~~~~FgeGit~~g~~L 108 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESAQ----------PVWME--RLGNIFAEGLASDGERL 108 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCSS----------CSEEE--ECTTCCEEEEEECSSCE
T ss_pred EEEEEEcCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCCc----------EEeEE--CCCCcceeEEEEeCCEE
Confidence 445555323334457888874 5888899999999999999743 23333 22233332233335566
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004293 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 163 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
++..-.++.+.+||..+.+.. - .+.. ... -..++ ++ ++.|+++..++.|.+
T Consensus 109 y~ltw~~~~v~V~D~~Tl~~~--------------~--------ti~~-~~e---GwGLt--~D-g~~L~vSdGs~~l~~ 159 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMPPQRE--------------R--------TTRY-SGE---GWGLC--YW-NGKLVRSDGGTMLTF 159 (268)
T ss_dssp EEEESSSCEEEEEETTTTEEE--------------E--------EEEC-SSC---CCCEE--EE-TTEEEEECSSSEEEE
T ss_pred EEEEccCCEEEEEECCcCcEE--------------E--------EEeC-CCc---eeEEe--cC-CCEEEEECCCCEEEE
Confidence 666777899999999887632 0 0110 011 12333 33 456777677899999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccceEeec-
Q 004293 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV- 320 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~- 320 (763)
+|..+.+.+.++.... .+..-..++.+.|. +|+ |.++. .++.|.+.|..+++........
T Consensus 160 iDp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~ 221 (268)
T 3nok_A 160 HEPDGFALVGAVQVKL----------------RGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASA 221 (268)
T ss_dssp ECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred EcCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence 9999887655442211 11111136777877 775 55554 5889999999997643333221
Q ss_pred ------------CCCCeeeeeccCCC
Q 004293 321 ------------GDASKIMSFTPTLN 334 (763)
Q Consensus 321 ------------~~~~~~~~~~p~~~ 334 (763)
....+.+||.|..+
T Consensus 222 L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 222 LTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp HHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred CcccccccccCcCCceEEEEEcCCCC
Confidence 23456677777543
No 262
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.53 E-value=0.0014 Score=67.10 Aligned_cols=179 Identities=9% Similarity=0.039 Sum_probs=108.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce
Q 004293 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 141 (763)
+..|..++.++.|..+|.. ++..... ......+.++...++ +. |..++.++.|..+|.. +. ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g~----------~~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-GT----------EKW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-SC----------EEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-CC----------EeE
Confidence 4557778888999999998 7766665 344445566666665 44 6667778999999987 32 133
Q ss_pred eeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEE
Q 004293 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (763)
Q Consensus 142 ~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 221 (763)
.+......+.++.+.+ ++.++ .++ +.|..+| .+++ .++.... ....+.++
T Consensus 171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~--------------~~~~~~~-----------~~~~~~~~ 220 (330)
T 3hxj_A 171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGT--------------EKWNFYA-----------GYWTVTRP 220 (330)
T ss_dssp EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSC--------------EEEEECC-----------SSCCCSCC
T ss_pred EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCc--------------EEEEEcc-----------CCcceece
Confidence 4444455677777766 44444 444 8899999 5543 1121111 11345666
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 004293 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 301 (763)
Q Consensus 222 ~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~ 301 (763)
...++ + .|.+++.++.|..+|. ++..+..+.. ... .+..+.+.+++. |.+++.++
T Consensus 221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~--------------------~~~-~~~~~~~~~~g~-l~v~t~~g 275 (330)
T 3hxj_A 221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKT--------------------GKR-IESSPVIGNTDT-IYFGSYDG 275 (330)
T ss_dssp EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEEC--------------------SSC-CCSCCEECTTSC-EEEECTTC
T ss_pred EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeC--------------------CCC-ccccceEcCCCe-EEEecCCC
Confidence 77775 3 5667777888888874 3332211100 000 133355566665 77888888
Q ss_pred eEEEEECCCCC
Q 004293 302 HVYLMDVNHAG 312 (763)
Q Consensus 302 ~i~iwd~~~~~ 312 (763)
.|+.+|. +++
T Consensus 276 gl~~~d~-~g~ 285 (330)
T 3hxj_A 276 HLYAINP-DGT 285 (330)
T ss_dssp EEEEECT-TSC
T ss_pred CEEEECC-CCc
Confidence 9999986 434
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.53 E-value=0.027 Score=57.29 Aligned_cols=223 Identities=9% Similarity=0.037 Sum_probs=132.2
Q ss_pred CceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 51 GCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..+.+|+|.+. +.+..+-...+.|..+++..+.....+....-.....+++.+.. +.++++-...+.|.++++....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~- 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL- 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCc-
Confidence 35678999985 55556666778899999876632111111222456789998763 5666776677899999987421
Q ss_pred CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
...+ .........|++.|.++.++++-. ..+.|...++..... ..+..
T Consensus 113 ----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~-------- 162 (318)
T 3sov_A 113 ----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN-------- 162 (318)
T ss_dssp ----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred ----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE--------
Confidence 2222 234456789999996666666653 357888888764321 11110
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
......+.++++|+++.++++=+..+.|..+|+.... ...+ ... . ......+++
T Consensus 163 -----~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~-------------~~~------~-~~~P~glav 216 (318)
T 3sov_A 163 -----SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAV-------------VKG------S-LPHPFALTL 216 (318)
T ss_dssp -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------------ECS------C-CSCEEEEEE
T ss_pred -----CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEE-------------ecC------C-CCCceEEEE
Confidence 1123468999999766556665667889999986422 1111 000 0 012566777
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004293 288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (763)
.. +..+.+-...+.|..++..+++........ ..+.....++|.
T Consensus 217 ~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~ 261 (318)
T 3sov_A 217 FE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 261 (318)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGG
T ss_pred eC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccc
Confidence 53 344445555889999999876644333222 233334445553
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.51 E-value=0.0047 Score=63.15 Aligned_cols=202 Identities=9% Similarity=0.062 Sum_probs=115.4
Q ss_pred eccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc-C------------------CCCceEEEEEeeCCC
Q 004293 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-G------------------HSANVFCTKFVPETS 106 (763)
Q Consensus 46 l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~-~------------------h~~~V~~v~~~p~~~ 106 (763)
+.+.-....+++|.++|++|.++..++.|..||..+++.. .+.. . ....+.++++.++.
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~- 91 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN- 91 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC-
Confidence 3343345678999999998888888999999998876432 2211 0 01357899999831
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec-----ccCceeEEEEec-CCCCEEEEEeC------------
Q 004293 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----HTRRVKKLAVEV-GNPHVVWSASE------------ 168 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp-~~~~~l~s~s~------------ 168 (763)
++ |+.+...+.|..+|...+. +..+.. .......+++.+ ++ ++.++-..
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~-----------~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGH-----------ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEE-----------CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHH
T ss_pred Cc-EEEEECCCCEEEEeCCCCE-----------EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceeh
Confidence 44 4445445558888876421 111111 123467788887 44 55544322
Q ss_pred -----CCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEE-eCCCcEEE
Q 004293 169 -----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARL 242 (763)
Q Consensus 169 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sg-s~Dg~i~i 242 (763)
++.|..||..+++. ..+.. .....+.++|+|+ ++.|+++ +..+.|.+
T Consensus 159 ~~~~~~g~v~~~d~~~~~~------------~~~~~--------------~~~~p~gia~~~d-g~~lyv~d~~~~~I~~ 211 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKET------------TLLLK--------------ELHVPGGAEVSAD-SSFVLVAEFLSHQIVK 211 (322)
T ss_dssp HHTCCCEEEEEEETTTTEE------------EEEEE--------------EESCCCEEEECTT-SSEEEEEEGGGTEEEE
T ss_pred cccCCCceEEEEeCCCCEE------------EEecc--------------CCccCcceEECCC-CCEEEEEeCCCCeEEE
Confidence 25566676554321 00000 0123457899997 5655544 56689999
Q ss_pred EeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----------CCeEEEEECC
Q 004293 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN 309 (763)
Q Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~----------d~~i~iwd~~ 309 (763)
|++..... . ....+. .. .+ ...+++.++|++.++... .+.|..+|..
T Consensus 212 ~~~~~~~~-~----------~~~~~~--~~--~g-----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 212 YWLEGPKK-G----------TAEVLV--KI--PN-----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EESSSTTT-T----------CEEEEE--EC--SS-----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred EECCCCcC-C----------ccceEE--eC--CC-----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 99875311 0 011110 00 11 567899999986666544 3556666653
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.47 E-value=0.042 Score=60.97 Aligned_cols=63 Identities=10% Similarity=-0.062 Sum_probs=46.8
Q ss_pred cCCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccCC
Q 004293 646 SDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 709 (763)
Q Consensus 646 s~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~g 709 (763)
..+|.|+-||..||+.+-....+. .+..-.....+.+++.++.|+.++.||.++++.+..+..
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 357999999999999987665432 222222223466778899999999999999998877653
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.46 E-value=0.019 Score=63.83 Aligned_cols=61 Identities=11% Similarity=-0.083 Sum_probs=44.5
Q ss_pred CCCcEEEEEcCcCcEEEEEecCCcceEEEEeeCCCCeEEEEeCCCcEEEEcCCCCCCccccC
Q 004293 647 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 708 (763)
Q Consensus 647 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~~sp~~~~laS~s~D~~IrvW~~~~~~~~~~~~ 708 (763)
.+|.|.-||+.||+.+-...-. .+++.-.....+.+++.++.|+.|+.||.++++.+..+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 4689999999999988766421 122221223356677779999999999999999887664
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.44 E-value=0.025 Score=62.90 Aligned_cols=51 Identities=12% Similarity=0.249 Sum_probs=39.2
Q ss_pred CCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcce-EEEEeeCCCC-eEEEEe
Q 004293 638 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG 688 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V-~~v~~sp~~~-~laS~s 688 (763)
.+.+|+.|+.||.++.||.+||+++-.++...+.+ .-+.|..+++ |++..+
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 57788889999999999999999999998765433 2366777886 555443
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.43 E-value=0.033 Score=56.63 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=115.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004293 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 143 (763)
+|+.+.. ..|+..|+.+......+ .....+.+++|++.. +.++++-...+.|..+++....... .....+
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~------~~~~~~ 72 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI 72 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEE
T ss_pred EEEEECC-CeEEEEECCCcceEehh--cCCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc------ccEEEE
Confidence 3444333 57999999887665554 234568899999873 4566666667899999987410000 001112
Q ss_pred ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004293 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (763)
Q Consensus 144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (763)
.........|++.+.+++++++-...+.|.++|+..... ..+.. ........+++
T Consensus 73 ~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P~~iav 127 (316)
T 1ijq_A 73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV 127 (316)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEE
T ss_pred eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce------------EEEEE-------------CCCCCcceEEe
Confidence 222345688999876667777777788999999764321 11111 01234688999
Q ss_pred eCCCCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004293 224 SSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 301 (763)
Q Consensus 224 ~p~~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~ 301 (763)
+|.++.++++.... +.|..+++... ....+ ... .-...+.|+++|++..|+.+.. .+
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~-------------~~~-------~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL-------------VTE-------NIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSC-CEEEE-------------ECS-------SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCEEEEEccCCCCeEEEEcCCCC-CeEEE-------------EEC-------CCCCceEEEEeccCCEEEEEECCCC
Confidence 99756555554433 67888877532 11110 000 0113788999998777776654 67
Q ss_pred eEEEEECCC
Q 004293 302 HVYLMDVNH 310 (763)
Q Consensus 302 ~i~iwd~~~ 310 (763)
.|..+|+..
T Consensus 187 ~I~~~d~dg 195 (316)
T 1ijq_A 187 SISSIDVNG 195 (316)
T ss_dssp EEEEEETTS
T ss_pred eEEEEecCC
Confidence 999999875
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.42 E-value=0.0048 Score=71.21 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=71.8
Q ss_pred cccC-ceEEEEeC-CCCCEEEEEeC-C----CcEEEEeCCCC-eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---
Q 004293 48 GHQG-CVNAISWN-SKGSLLISGSD-D----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--- 116 (763)
Q Consensus 48 gH~~-~V~~l~fs-p~g~~Lasgs~-D----~~v~iWd~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--- 116 (763)
+|.- .+...+|| |||++||-+.. + .+|+++|+.++ +.+... -......+.|+|+ ++.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD--g~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD--HTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS--TTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC--CCEEEEEEECCCC
Confidence 3443 68889999 99998885432 2 35999999998 632110 0112346889999 6666666654
Q ss_pred --CcEEEEECCCCCCCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCC
Q 004293 117 --AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG 180 (763)
Q Consensus 117 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s~--dg~i~iwd~~~~ 180 (763)
..|.++++.++... ....+. ........+.|+|++..++++... ...|+++|+.++
T Consensus 245 ~~~~v~~~~lgt~~~~--------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSE--------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp CEEEEEEEETTSCGGG--------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCCEEEEEECCCCchh--------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 25777887653211 112222 223446678999955434444432 335777887764
No 270
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.39 E-value=0.061 Score=61.71 Aligned_cols=225 Identities=8% Similarity=-0.023 Sum_probs=132.2
Q ss_pred cCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCC----eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004293 50 QGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 50 ~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~----~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
...+..|+|.+. +.++++-...+.|+.+++... .....+ ......+..|++.+.. ++++++-...+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEeC
Confidence 456788999985 445556666788999998753 222233 3344567789999874 466777777889999998
Q ss_pred CCCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCC
Q 004293 125 SRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (763)
.... ...+ .........|++.|..+.++++-... +.|...++..... ..+..
T Consensus 501 dG~~-----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~--- 554 (791)
T 3m0c_C 501 KGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT--- 554 (791)
T ss_dssp TSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC---
T ss_pred CCCe-----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe---
Confidence 7421 2222 23345688999999766677665433 6788888765431 11111
Q ss_pred CceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccce
Q 004293 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (763)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i 282 (763)
......+.|++++..+.++++=.....|..+++..... ..+. .. .+.-. ..
T Consensus 555 ----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~-------------~~----~~~l~-~P 605 (791)
T 3m0c_C 555 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-------------ED----EKRLA-HP 605 (791)
T ss_dssp ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------EC----TTTTS-SE
T ss_pred ----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEe-------------cC----CCccC-CC
Confidence 12345789999987655555545567899999864321 1110 00 00001 24
Q ss_pred eEEEEcCCCCEEEEEe-CCCeEEEEECCCCCccceEeec-CCCCeeeeeccCC
Q 004293 283 THVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTL 333 (763)
Q Consensus 283 ~~v~~spdg~~l~~~s-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~~ 333 (763)
.+|++. +.+|+.+. ..+.|...+..++......... ..+..+..|+|..
T Consensus 606 ~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 606 FSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 656 (791)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred CEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence 466663 33555554 5788999998776644433322 3344445566543
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.35 E-value=0.055 Score=60.07 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=38.3
Q ss_pred CCCCEEEEecCCCcEEEEEcCcCcEEEEEecCCcc-eEEEEeeCCCC-eEEEEe
Q 004293 637 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSG 688 (763)
Q Consensus 637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~~sp~~~-~laS~s 688 (763)
..+.+|+.|+.|+.++.||.+||+++-.++-..+. ..-+.|..+++ |+++.+
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 36778888999999999999999999888755432 23456667775 555443
No 272
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.34 E-value=0.029 Score=58.51 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=113.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004293 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
++..|+.++.++.|..+|..+|+.+..+. ............ +..++.++.++.|..+|..+++. +
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~----------~ 166 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAV----------K 166 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCE----------E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcE----------E
Confidence 45677788899999999999999887663 222111111122 35788888899999999987431 2
Q ss_pred eeeecccCc-----eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCC-----------------CCCCCc-------
Q 004293 141 ALYQCHTRR-----VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-----------------AGSSHQ------- 191 (763)
Q Consensus 141 ~~~~~h~~~-----v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----------------~~~~~~------- 191 (763)
......... ....... + ..++.++.++.|..+|..+++..-. ......
T Consensus 167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~ 243 (376)
T 3q7m_A 167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF 243 (376)
T ss_dssp EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence 222211111 0112222 2 3566777888999999887764200 000000
Q ss_pred ----ccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCccccc
Q 004293 192 ----ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (763)
Q Consensus 192 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 267 (763)
......++...+....... ......+... +..+++++.++.|..+|..+++.+......
T Consensus 244 ~~~~~g~l~~~d~~tG~~~w~~~----~~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~---------- 306 (376)
T 3q7m_A 244 ALAYNGNLTALDLRSGQIMWKRE----LGSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDL---------- 306 (376)
T ss_dssp EECTTSCEEEEETTTCCEEEEEC----CCCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTT----------
T ss_pred EEecCcEEEEEECCCCcEEeecc----CCCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeeccc----------
Confidence 0011112222222111111 0112233332 347778888899999999888644322100
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCcc
Q 004293 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (763)
Q Consensus 268 ~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~ 314 (763)
+.. .+..... .+..|++++.+|.|+++|..+++..
T Consensus 307 --------~~~--~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 307 --------LHR--LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp --------TTS--CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred --------CCC--cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 000 1122222 2467889999999999999997643
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.30 E-value=0.068 Score=56.26 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=118.5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004293 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 143 (763)
+|+.+.. ..|+..++........+ .....+..++|++.. +.++.+-...+.|+.+++....... .....+
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI 154 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred eeEEecc-ceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence 4444443 68999999876554444 345678899999873 5555665667889999887421000 112222
Q ss_pred ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004293 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (763)
Q Consensus 144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (763)
.........|++.+.+++++++-...+.|.+.++..... ..+.. ........|++
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------------~~l~~-------------~~~~~P~~iav 209 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV 209 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------------EEEEE-------------CSSCCEEEEEE
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------------EEEEe-------------CCCCCcceEEE
Confidence 224456788999886677777777788999998765431 11111 11234689999
Q ss_pred eCCCCcEEEEEeC-CCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004293 224 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 301 (763)
Q Consensus 224 ~p~~~~~l~sgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~ 301 (763)
+|.++.++.+-.. .+.|...++..... ..+ .. .+. ...+.|+++|++..|+.+.. .+
T Consensus 210 dp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~-------------~~-----~~l--~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL-------------VT-----ENI--QWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp ETTTTEEEEEECSSSCCEEEEETTSCSC-EEE-------------EC-----SSC--SCEEEEEEETTTTEEEEEETTTT
T ss_pred ecccCeEEEEeCCCCCEEEEEeCCCCcc-EEE-------------EE-----CCC--CceEEEEEEeCCCEEEEEECCCC
Confidence 9975555554423 36788888764221 111 00 001 14788999998887777754 78
Q ss_pred eEEEEECCCCC
Q 004293 302 HVYLMDVNHAG 312 (763)
Q Consensus 302 ~i~iwd~~~~~ 312 (763)
.|..+|+....
T Consensus 269 ~I~~~d~dG~~ 279 (400)
T 3p5b_L 269 SISSIDVNGGN 279 (400)
T ss_dssp EEEEEETTSCC
T ss_pred EEEEEeCCCCc
Confidence 99999987643
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.28 E-value=0.014 Score=55.95 Aligned_cols=174 Identities=13% Similarity=0.034 Sum_probs=100.9
Q ss_pred eEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCC
Q 004293 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (763)
Q Consensus 83 ~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 160 (763)
+.+.++.......+..+.|++. .++.+.+.+| .|+.+|+.+++ .+.... -..........+.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgk----------v~~~~~-l~~~~fgeGi~~~~~ 75 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGR----------ILQRAE-VPPPYFGAGIVAWRD 75 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCC----------EEEEEE-CCTTCCEEEEEEETT
T ss_pred EEEEEcCCCCccccccEEEECC---EEEEECCCCCCceEEEEECCCCC----------EEEEEe-CCCCcceeEEEEeCC
Confidence 4455553223345679999864 6777777754 89999999743 233332 122333332333345
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcE
Q 004293 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (763)
Q Consensus 161 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i 240 (763)
++++..-.++.+.+||..+.+.. - .+.. .+. -..++ ++ +..|+++..++.|
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~--------------~--------ti~~-~~~---Gwglt--~d-g~~L~vSdgs~~l 126 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPR--------------A--------RFRY-PGE---GWALT--SD-DSHLYMSDGTAVI 126 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEE--------------E--------EEEC-SSC---CCEEE--EC-SSCEEEECSSSEE
T ss_pred EEEEEEeeCCEEEEEECCcCcEE--------------E--------EEeC-CCC---ceEEe--eC-CCEEEEECCCCeE
Confidence 66666677899999999887632 0 0110 011 12333 44 3455555668899
Q ss_pred EEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccce
Q 004293 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (763)
Q Consensus 241 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~ 316 (763)
.++|..+.+.+.++.... .+..-..++.+.|. +|+..+....+..|.+.|..+++....
T Consensus 127 ~~iDp~t~~~~~~I~V~~----------------~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 127 RKLDPDTLQQVGSIKVTA----------------GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp EEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred EEEeCCCCeEEEEEEEcc----------------CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 999999887654442110 11111136667766 666444444588999999999764433
No 275
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.25 Score=57.13 Aligned_cols=200 Identities=10% Similarity=0.052 Sum_probs=117.9
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-------------cCCCCceEEEEEeeCCCCcEEEEEeCC
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------------TGHSANVFCTKFVPETSDELVVSGAGD 116 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-------------~~h~~~V~~v~~~p~~~~~~l~s~s~d 116 (763)
...|.++...++|.+.+ |+..+-|.++|..++....... .-....|.++...++ +. |-.|+.+
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CC-EEEEEBS
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CC-EEEEecC
Confidence 35688998888887554 5664568899988765332110 013457889888877 44 5556667
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCceeee----------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 004293 117 AEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 186 (763)
+-|..++..... ...+. -....|.++...+ ++ .|..|+.++-|..||..+....
T Consensus 333 ~Gl~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~--- 396 (781)
T 3v9f_A 333 GGINFISNAPPT-----------FHTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAI--- 396 (781)
T ss_dssp SCEEEECSSCCS-----------CEEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEE---
T ss_pred CeEEEeCCCCCc-----------ceeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEE---
Confidence 778888877522 11111 1235688888876 33 3556776777999997654211
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccc
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 266 (763)
..... .......|.++...++ + .|.+|+.++-|..||..+++.. .
T Consensus 397 ------------~~~~~-------~~~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~--------------~ 441 (781)
T 3v9f_A 397 ------------YNKEN-------RELLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQ--------------I 441 (781)
T ss_dssp ------------CC------------CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEE--------------E
T ss_pred ------------EccCC-------CCCCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEE--------------E
Confidence 00000 0112356888888875 4 4556777778889988765311 0
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 267 ~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
+... +.....|.++...++|.. ..|+. +-|.+||..++
T Consensus 442 ~~~~-----~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 442 IELE-----KNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASK 479 (781)
T ss_dssp CCST-----TTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSS
T ss_pred eccC-----CCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCC
Confidence 0000 111225899999888874 44555 56888887663
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.24 E-value=0.0077 Score=68.41 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=73.8
Q ss_pred EEEeCC-CCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CCcE
Q 004293 55 AISWNS-KGSLLISGSDDT-----------HINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 119 (763)
Q Consensus 55 ~l~fsp-~g~~Lasgs~D~-----------~v~iWd~~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg~I 119 (763)
++++.+ +|++++.|+.+. .+.+||+.+++. +..+...+.....++++.++ +.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCCCce
Confidence 566677 899999987653 588999988752 23332334444456777887 789999884 5689
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe-CC-----CcEEEEECCCCC
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED-----GTLRQHDFRQGS 181 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s-~d-----g~i~iwd~~~~~ 181 (763)
.+||..+... ..+..+... ..-.+++..+ ++++++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd~~t~~W--------~~~~~~~~~-R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSSDSW--------IPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGGTEE--------EECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcCCce--------eECCCCCcc-ccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9999986432 112222211 1123455556 567888888 34 579999987754
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.22 E-value=0.038 Score=56.12 Aligned_cols=183 Identities=7% Similarity=0.030 Sum_probs=112.8
Q ss_pred CCcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccC
Q 004293 71 DTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (763)
Q Consensus 71 D~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 148 (763)
...|+..|+.... ....+ .....+.+++|.+.. +.++.+-...+.|..+++..... ....+.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~---------~~~~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTES---------VQNVVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSC---------CCEEEEECCS
T ss_pred cCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCc---------eEEEEcCCCC
Confidence 4679999998753 21112 223457799999863 56666666778899999875311 0112222334
Q ss_pred ceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCC
Q 004293 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (763)
Q Consensus 149 ~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 228 (763)
....+++.+.++.++++-...+.|.++++..... ..+.. ........++++|.++
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g 134 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSG 134 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGT
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCC
Confidence 5778999886777777777788999999865421 11110 1223467899999755
Q ss_pred cEEEEEe-CCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEE
Q 004293 229 HLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLM 306 (763)
Q Consensus 229 ~~l~sgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iw 306 (763)
.++.+-. ..+.|...++.... ...+ .. .+. ..-+.|+|+|++..|+.+.. .+.|..+
T Consensus 135 ~ly~td~~~~~~I~r~~~dG~~-~~~~-------------~~-----~~l--~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 135 FMYWTDWGEVPKIERAGMDGSS-RFII-------------IN-----SEI--YWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp EEEEEECSSSCEEEEEETTSCS-CEEE-------------EC-----SSC--SCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEEecCCCCEEEEEEcCCCC-eEEE-------------EE-----CCC--CCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 4444432 35778888776321 1111 00 001 13688999997777776654 7899999
Q ss_pred ECCCC
Q 004293 307 DVNHA 311 (763)
Q Consensus 307 d~~~~ 311 (763)
++...
T Consensus 194 d~dG~ 198 (318)
T 3sov_A 194 NLDGT 198 (318)
T ss_dssp ETTSC
T ss_pred cCCCC
Confidence 98753
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.19 E-value=0.066 Score=61.44 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=116.3
Q ss_pred CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCc
Q 004293 70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (763)
Q Consensus 70 ~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (763)
....|+..++........+ .....+..|+|.+.. +.++++-...+.|+.+++....... .....+......
T Consensus 402 n~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~ 472 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQA 472 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSC
T ss_pred cccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCC
Confidence 3457888888766554444 334567899999863 5666666667889999887421000 112223334456
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCc
Q 004293 150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (763)
Q Consensus 150 v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 229 (763)
...|++.+.+++++++-...+.|.+.++..... ..+.. ........|+++|.++.
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------------~~l~~-------------~~l~~P~gIaVDp~~g~ 527 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGF 527 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------------EEEEe-------------CCCCCcceEEEecCCCC
Confidence 788999986777888888889999999875431 11211 11234689999997555
Q ss_pred EEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004293 230 LLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMD 307 (763)
Q Consensus 230 ~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~~i~iwd 307 (763)
++++-... +.|...++.... ...+ .... . ...+.|++++.+..|+.+.. .+.|..++
T Consensus 528 LYwtD~g~~~~I~~~~~dG~~-~~~l-------------v~~~-----l--~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNGVD-IYSL-------------VTEN-----I--QWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEEEECSSSCEEEEEETTSCC-EEEE-------------ECSS-----C--SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCeEEEEecCCCc-eEEE-------------EeCC-----C--CCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 55544333 678888876322 1111 0000 1 14788999987777777654 67899999
Q ss_pred CCCCC
Q 004293 308 VNHAG 312 (763)
Q Consensus 308 ~~~~~ 312 (763)
+....
T Consensus 587 ~dG~~ 591 (791)
T 3m0c_C 587 VNGGN 591 (791)
T ss_dssp TTSCS
T ss_pred cCCCc
Confidence 87644
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.72 Score=53.26 Aligned_cols=216 Identities=8% Similarity=0.063 Sum_probs=119.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcc------CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
..|.++...++|.+++. ..+ -|.+||..+++...-... .....|.++...++ + .|..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~--g-~lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD--N-KLWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT--S-EEEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC--C-CEEEEeCCCCeEEECC
Confidence 46889988888886654 444 688999887654322100 12356888888776 4 4555666567888998
Q ss_pred CCCCCCCCCCCCC----CCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004293 125 SRFSGRGLDDNAI----TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
............. .......-....|.+|...+++ .|..|+.++-|..++....... .+..
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-------------~~~~ 350 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH-------------TWSY 350 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE-------------EEC-
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce-------------eecc
Confidence 7532111000000 0000001134568888887633 4566777788999987654311 0000
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcc
Q 004293 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (763)
.... ..........|.++...++ + .|.+|+.++-|..||..++... .+... .+....
T Consensus 351 ~~~~---~~~~~l~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~--------------~~~~~----~~~~~~ 407 (781)
T 3v9f_A 351 SPTQ---MNESSLSNKVVSSVCDDGQ-G-KLWIGTDGGGINVFENGKRVAI--------------YNKEN----RELLSN 407 (781)
T ss_dssp ---C---CCSSCCSSSCEEEEEECTT-S-CEEEEEBSSCEEEEETTEEEEE--------------CC---------CCCS
T ss_pred Cccc---cccCCCCCcceEEEEEcCC-C-CEEEEeCCCcEEEEECCCCeEE--------------EccCC----CCCCCc
Confidence 0000 0000012346888888875 3 4667777777889998753211 00000 011122
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004293 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~ 310 (763)
.|.++...++|. |..|+.++-|..++..+
T Consensus 408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRL 436 (781)
T ss_dssp BEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred ceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence 599999888887 45577667788887765
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.03 E-value=0.13 Score=51.96 Aligned_cols=202 Identities=9% Similarity=0.116 Sum_probs=117.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCC--CCc---EEEEEeC---CCcEEEEECCCCCCCCCC
Q 004293 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---LVVSGAG---DAEVRLFNLSRFSGRGLD 133 (763)
Q Consensus 62 g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~--~~~---~l~s~s~---dg~I~iwd~~~~~~~~~~ 133 (763)
..+++.....+-+.++|+ +|+.+..+ .. +.++.+..-|.- ++. ++++... +++|.+|++.....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---- 111 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---- 111 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence 355665567788999999 88888887 32 567788777741 011 2333333 57899997742111
Q ss_pred CCCCCCceeee-------cccCceeEEEE--ecCCCC-EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 134 DNAITPSALYQ-------CHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 134 ~~~~~~~~~~~-------~h~~~v~~l~~--sp~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
.+..+. .-...++.+++ +|..+. +++....+|.+..|++.....- ......+..+.
T Consensus 112 -----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lVR~f~-- 177 (355)
T 3amr_A 112 -----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKVRAFK-- 177 (355)
T ss_dssp -----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEEEEEE--
T ss_pred -----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEEEEec--
Confidence 122221 11156777888 664443 6777888899999998542100 00001111111
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
....+-.|...+. ...|+++-.+.-|..||.+-..... ...+..+.. ++-...+.
T Consensus 178 ----------lgsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~~------g~l~aDvE 232 (355)
T 3amr_A 178 ----------MNSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRADG------RHLTRDIE 232 (355)
T ss_dssp ----------CSSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC--------CEEEEEBSS------SSBCSCEE
T ss_pred ----------CCCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC--------ceEEEEecC------CccccCcc
Confidence 0125678888886 4689999998777777755211000 001111111 11111477
Q ss_pred EEEE--cCCCC-EEEEEeC-CCeEEEEECCC
Q 004293 284 HVTF--SPNGE-EVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 284 ~v~~--spdg~-~l~~~s~-d~~i~iwd~~~ 310 (763)
.|++ .++++ ||++++. ++...+||...
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 7877 56666 7877774 88999999974
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.00 E-value=0.015 Score=66.08 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=63.2
Q ss_pred ccccchhhhhccccceeecc-ccCceEEEEeCCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCC-ceEEEEEeeCC
Q 004293 29 SLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPET 105 (763)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~g-H~~~V~~l~fsp~g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~-~V~~v~~~p~~ 105 (763)
.+.+++....++..+..+.. +.....++++..+|++++.|+. +..+.+||..+.+....- ..+.. .-.++...++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d- 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD- 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT-
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC-
Confidence 45666666666666665533 3344556788899999999984 568999999887644321 11211 1234556667
Q ss_pred CCcEEEEEe-CC-----CcEEEEECCCC
Q 004293 106 SDELVVSGA-GD-----AEVRLFNLSRF 127 (763)
Q Consensus 106 ~~~~l~s~s-~d-----g~I~iwd~~~~ 127 (763)
+++++.|+ .+ ..+.+||..+.
T Consensus 298 -g~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 298 -GRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp -SCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred -CeEEEEeCcccCCcccccceEeCCCCC
Confidence 78999888 34 56999999764
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.99 E-value=0.0017 Score=74.12 Aligned_cols=204 Identities=7% Similarity=-0.030 Sum_probs=116.1
Q ss_pred CceEEEEeCCCCCEEE-EEeCCCcEEEEeCCC----CeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004293 51 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 51 ~~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~----~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
..+..|+|.+.+..|. +-...+.|+.+++.+ ......+ ......+..|++.+.. +.++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecC
Confidence 3466889998665555 444568899999875 2221111 1122345678888653 5666666667889999987
Q ss_pred CCCCCCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCC
Q 004293 126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (763)
... ...+ .........|++.|.++.++++-... +.|.++++...... .+.
T Consensus 484 g~~-----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~l~----- 535 (699)
T 1n7d_A 484 GVK-----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SLV----- 535 (699)
T ss_dssp SCC-----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC------------EES-----
T ss_pred CCc-----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee------------EEE-----
Confidence 421 2222 22234567889998666666554333 67777776543210 110
Q ss_pred ceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCcccee
Q 004293 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (763)
Q Consensus 204 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 283 (763)
. ......+.|+|+|+++.++++-...+.|..+|+.... ...+. .. .+... ...
T Consensus 536 ------~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~-------------~~----~~~~~-~P~ 588 (699)
T 1n7d_A 536 ------T--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-------------ED----EKRLA-HPF 588 (699)
T ss_dssp ------C--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEEC-------------CC----SSSCS-SCC
T ss_pred ------e--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEE-------------ec----CCcCC-Cce
Confidence 0 0123456899999866677776777889999986422 11110 00 00000 133
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 284 ~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.|++..+ ..+++....+.|..++..+++
T Consensus 589 glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 589 SLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 4555444 344444557899999987754
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.84 E-value=0.1 Score=55.44 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=92.7
Q ss_pred ceEEEEeCCC---CCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC---Cc-EEEEEC
Q 004293 52 CVNAISWNSK---GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNL 124 (763)
Q Consensus 52 ~V~~l~fsp~---g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d---g~-I~iwd~ 124 (763)
....|+|+|+ |.++++ ...+.|+.+|..++...... .......+++|+++ ++++++.... .. +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEEC
Confidence 4568999985 554444 33389999999887755433 34456899999999 6755554321 11 333332
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004293 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
.. .. .....+. .......++++|.++.++++-..++.|+.+|..++... ..+....
T Consensus 215 ~~--~~-------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~~--- 270 (433)
T 4hw6_A 215 AS--GF-------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMMD--- 270 (433)
T ss_dssp GG--TT-------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEECS---
T ss_pred CC--Ce-------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEeccC---
Confidence 21 10 0011222 33456778999866677767667788999998755410 0111100
Q ss_pred eeeccCCCCCccceEEEEEeCCCCc-EEEEEeCCCcEEEEeCC
Q 004293 205 KRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR 246 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~-~l~sgs~Dg~i~iwd~~ 246 (763)
.......++|+|+ ++ ++++-...+.|+.++..
T Consensus 271 ---------~~~~~~~ia~dpd-G~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 271 ---------TKGSNFHIVWHPT-GDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ---------CCSSCEEEEECTT-SSEEEEEETTTTEEEEEEBC
T ss_pred ---------CCCCcccEEEeCC-CCEEEEEeCCCCEEEEEeCC
Confidence 0112246999998 55 55555567889998865
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.77 E-value=0.45 Score=53.13 Aligned_cols=220 Identities=9% Similarity=0.026 Sum_probs=133.6
Q ss_pred CceEEEEeCCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 51 GCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g~~-Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..+..|+|++.+.. .++-..++.|..+++........+ ......+..+++.+.. ++++++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT-
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc-
Confidence 45789999986554 456567789999998765443333 2223457789998774 5666666667889999987421
Q ss_pred CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
...+ .........|++.|..+.++++- +..+.|...++..... ..+..
T Consensus 114 ----------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~~-------- 163 (628)
T 4a0p_A 114 ----------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLVP-------- 163 (628)
T ss_dssp ----------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred ----------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEEC--------
Confidence 1222 23345678999999776666664 3356787787765431 11111
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
.....+.++++++++.++++=...+.|..+|+..... ..+ . .+.. ...+|++
T Consensus 164 ------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~--------------~-----~~l~--~P~glav 215 (628)
T 4a0p_A 164 ------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI--------------A-----DDLP--HPFGLTQ 215 (628)
T ss_dssp ------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--------------E-----ECCS--CEEEEEE
T ss_pred ------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe--------------e-----ccCC--CceEEEE
Confidence 2345789999997555555556678899999875321 111 0 0011 2456777
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCccceEeec-CCCCeeeeeccC
Q 004293 288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT 332 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~p~ 332 (763)
.. +..+++-...+.|...|..+++........ ..+.....+++.
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~ 260 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS 260 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGG
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeec
Confidence 65 343444445889999998887644433322 223334455553
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.61 E-value=0.45 Score=53.13 Aligned_cols=191 Identities=7% Similarity=0.003 Sum_probs=119.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004293 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (763)
Q Consensus 64 ~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 143 (763)
+|+.+ ....|+..|+.+......+....-..+..++|++.. +.++.+-..++.|..+++.... ....+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~----------~~~v~ 75 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSA----------LEHVV 75 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS----------CEEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCC----------cEEEE
Confidence 44443 346899999987654443322334578899999974 5666666678899999887421 11222
Q ss_pred ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE
Q 004293 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (763)
Q Consensus 144 ~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 223 (763)
.........|++.+.+++++++-...+.|.+.++..... ..+.. ........|++
T Consensus 76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iav 130 (628)
T 4a0p_A 76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALAL 130 (628)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEE
T ss_pred eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEE
Confidence 222346788999886777887877788999999865431 11111 11234689999
Q ss_pred eCCCCcEEEEE-eCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 004293 224 SSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 301 (763)
Q Consensus 224 ~p~~~~~l~sg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~-d~ 301 (763)
+|.++.++.+- +..+.|...++..... ..+ . .+ -...+.|++++++..|+.+.. .+
T Consensus 131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l-------------~------~~--~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 131 DPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL-------------V------PN--VGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSC-EEE-------------E------CS--CSSEEEEEEETTTTEEEEEETTTT
T ss_pred ccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE-------------E------CC--CCCcceEEEccccCEEEEEECCCC
Confidence 99756554443 2246677777653321 110 0 00 114788999998777777755 78
Q ss_pred eEEEEECCCCCc
Q 004293 302 HVYLMDVNHAGG 313 (763)
Q Consensus 302 ~i~iwd~~~~~~ 313 (763)
.|..+++.....
T Consensus 189 ~I~~~d~dG~~~ 200 (628)
T 4a0p_A 189 LIESSNMLGLNR 200 (628)
T ss_dssp EEEEEETTSCSC
T ss_pred EEEEEcCCCCce
Confidence 999999977443
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.50 E-value=0.18 Score=50.47 Aligned_cols=170 Identities=10% Similarity=0.053 Sum_probs=105.1
Q ss_pred eeccccCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccC----CC--CceEEEEE---eeCCCCcEEEEEe
Q 004293 45 ELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETG----HS--ANVFCTKF---VPETSDELVVSGA 114 (763)
Q Consensus 45 ~l~gH~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~----h~--~~V~~v~~---~p~~~~~~l~s~s 114 (763)
.+.+..---.+++|.+. +.++++.-..++|..||...+........+ .. ..+..|.| .|+ ++++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~ 84 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMK 84 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEc
Confidence 34444445567899874 555555558999999999866443332122 11 24689999 577 67777644
Q ss_pred -------------CCCcEEEEECC---CCCCCCCCCCCCCCceeeecc-----------cCceeEEEEecCCCCEEEEEe
Q 004293 115 -------------GDAEVRLFNLS---RFSGRGLDDNAITPSALYQCH-----------TRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 115 -------------~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~h-----------~~~v~~l~~sp~~~~~l~s~s 167 (763)
.+..|..+|+. +++... ...+... ......|+..+ +++..++++
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--------~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s 155 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVW--------SVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFA 155 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE--------EEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEE--------EecCccccccccccccccccCCceeEECC-CCCEEEeCC
Confidence 26779999988 432110 1111111 13488999999 567777888
Q ss_pred CC-CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004293 168 ED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 168 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
.- +.|...+..... ...+.+... ........+.|+++|+ +++|++....+.+..+|+.
T Consensus 156 ~~~~~I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 156 LGMPAIARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ESSCEEEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEECS
T ss_pred CCCCeEEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCC
Confidence 77 777777654332 111211110 0112345779999997 6777777669999999988
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=0.072 Score=56.69 Aligned_cols=157 Identities=7% Similarity=0.028 Sum_probs=96.6
Q ss_pred ceEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-CC----cEEEEECC
Q 004293 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS 125 (763)
Q Consensus 52 ~V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-dg----~I~iwd~~ 125 (763)
....|+|+| ++..|..+...+.|+.+|+.++...... ........++|+++ ++.|+.+.. ++ .+...+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 3555555544488999999877654443 34456889999999 675555443 22 23334432
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004293 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
. .. .....+. .......++++|+++.++++-..++.|..+|....... .+...
T Consensus 214 g-~~--------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~~~----- 266 (430)
T 3tc9_A 214 S-GF--------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLFTI----- 266 (430)
T ss_dssp G-TS--------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEEEC-----
T ss_pred C-ce--------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEEEc-----
Confidence 1 11 1112222 23456788999966777777777889999998754310 11110
Q ss_pred eeccCCCCCccceEEEEEeCCCCc-EEEEEeCCCcEEEEeCCC
Q 004293 206 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~p~~~~-~l~sgs~Dg~i~iwd~~~ 247 (763)
........++|+|+ ++ ++++-...+.|..++...
T Consensus 267 -------~~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 -------QDSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp -------SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEET
T ss_pred -------CCCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCCc
Confidence 01134578999998 56 555556678899988653
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.42 E-value=0.078 Score=53.14 Aligned_cols=179 Identities=7% Similarity=0.037 Sum_probs=104.9
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec----c--cCceeEEEE---ecCCCCE
Q 004293 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPHV 162 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---sp~~~~~ 162 (763)
...-..+++|++.. +.++++.-..++|..||...+.. ..+ .+.. . ...+..|.| .|. +.+
T Consensus 11 ~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~--------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL 79 (334)
T 2p9w_A 11 KNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSH--------FNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRL 79 (334)
T ss_dssp TTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCE--------EEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEE
T ss_pred cccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeE--------EEE-ecCCccccCCCcceeeEEEEeccCCC-CcE
Confidence 33445688999863 55555555799999999874211 001 1211 0 113578999 674 567
Q ss_pred EEEEe-------------CCCcEEEEECC---CCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCC
Q 004293 163 VWSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (763)
Q Consensus 163 l~s~s-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 226 (763)
+++.. .+..|..+|+. +++.. ...++..-...............+.++..++
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~ 147 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD 147 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCccccccccccccccccCCceeEECCC
Confidence 66543 25778999988 55432 1122110000000000001235789999997
Q ss_pred CCcEEEEEeCC-CcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEE
Q 004293 227 RPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (763)
Q Consensus 227 ~~~~l~sgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~i 305 (763)
|+..++++.- +.|..++.... .+..+.... +........+.++++|+|..|++....+.|..
T Consensus 148 -GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~---------------~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 148 -GNSYVAFALGMPAIARVSADGK-TVSTFAWES---------------GNGGQRPGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp -SCEEEEEEESSCEEEEECTTSC-CEEEEEECC---------------CCSSSCCSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred -CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecC---------------CCcccccCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 7888888888 88777776643 111110000 00111124788999999999999988999999
Q ss_pred EECCC
Q 004293 306 MDVNH 310 (763)
Q Consensus 306 wd~~~ 310 (763)
+|+.+
T Consensus 211 fD~~~ 215 (334)
T 2p9w_A 211 FDVSK 215 (334)
T ss_dssp EECSS
T ss_pred EcCCC
Confidence 99984
No 289
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.39 E-value=0.9 Score=45.14 Aligned_cols=221 Identities=11% Similarity=0.151 Sum_probs=126.9
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004293 56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (763)
Q Consensus 56 l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 135 (763)
.-.+|..+.||.=. ..++.|+|+++...++.+ . ....|.--+|... +.|+-.. +..|+.|++...
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~-~-~~e~VvfWkWis~---~~L~lVT-~taVyHWs~~~~-------- 136 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE-------- 136 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCEEEEEECSS---SEEEEEE-SSEEEEEESSTT--------
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcce-e-cCCccEEEEecCC---CeEEEEc-CCcEEEEcccCC--------
Confidence 44578888888765 578999999999999887 2 3467888888766 5666555 568999999742
Q ss_pred CCCCceeeeccc----CceeEEEEecCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCce
Q 004293 136 AITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (763)
Q Consensus 136 ~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (763)
..|.+.+..|. ..|..-..+++...++++|- -.|.+.+|..+.+.. ..+
T Consensus 137 -s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-------------Q~i------- 195 (365)
T 2xzh_A 137 -SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-------------QPI------- 195 (365)
T ss_dssp -CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-------------EEE-------
T ss_pred -CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-------------cee-------
Confidence 24566666553 35666666774443444442 236777887766531 111
Q ss_pred eeccCCCCCccceEEEEEe--CCCCcEEEEEeC---CCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCCc
Q 004293 206 RSLADPPKQTLSLKSCDIS--STRPHLLLVGGS---DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (763)
Q Consensus 206 ~~~~~~~~~~~~v~~i~~~--p~~~~~l~sgs~---Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (763)
.+|......+.+. +....+|+-+.. .+.++|-++.... ....+. .+.+..+.| +....+
T Consensus 196 ------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~-----kk~vdi~fp----pea~~D 260 (365)
T 2xzh_A 196 ------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFP----PEAQND 260 (365)
T ss_dssp ------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC-----CEEEEECCC----TTCTTC
T ss_pred ------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc-----cccceeeCC----ccccCC
Confidence 1222222111111 111112222221 2578888885421 110110 011111211 122233
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeee
Q 004293 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (763)
Q Consensus 280 ~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 328 (763)
. --++..++.-..++.-+.-|.|++||+.++.......-..+.+=..+
T Consensus 261 F-PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta 308 (365)
T 2xzh_A 261 F-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 308 (365)
T ss_dssp C-EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred c-eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEec
Confidence 3 55688888888899999999999999999875544444444443333
No 290
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.29 E-value=0.26 Score=56.59 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=68.7
Q ss_pred eEEEEeCCCCCEEEEEeCC-----CcEEEEeCCCCe--EEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---CCcEEEE
Q 004293 53 VNAISWNSKGSLLISGSDD-----THINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLF 122 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D-----~~v~iWd~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---dg~I~iw 122 (763)
...++|+|||+.|+....| ..|.++++.++. ....+..........+.|+|+ +++|+..+. ...|.++
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEE
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEE
Confidence 3468899999988877665 368888988763 122221223345678899999 677766552 3458888
Q ss_pred ECCCCCCCCCCCCCCCC--ceeeecccCceeEEEEecCCCCEEEEEeCC--C--cEEEEECCC
Q 004293 123 NLSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ 179 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d--g--~i~iwd~~~ 179 (763)
|+..+.+ .. ........+...++.|+. ++.+++....+ + .|..+|+.+
T Consensus 301 d~~~~~~--------~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 301 DLRKGNA--------HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSSCTT--------CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred ECCCCCC--------CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 8876321 11 111223345556666654 54555555444 2 566666653
No 291
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.27 E-value=1.2 Score=45.18 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=40.8
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEEec---CCcceEEEEeeCCCCeEEEEeCCCcEEEEcC
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG---DEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 698 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g---H~~~V~~v~~sp~~~~laS~s~D~~IrvW~~ 698 (763)
+.+++++++.|. +|.| .+..+.|+.-..+.. +...+.+|.|.+++ .++.+|.+|.|.-++-
T Consensus 257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp ESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred ecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 566777777665 6666 455666665555542 34568899998554 4667778998877764
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.21 E-value=0.66 Score=47.05 Aligned_cols=200 Identities=11% Similarity=0.059 Sum_probs=105.2
Q ss_pred ccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004293 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
+.+.+..+.+.+++..++.+. ++.|.. ..+.|+.-..+.......+..+.+.|+ +.+++.+...+..+-+|-.
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g~~G~~~~S~d~g--- 192 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPS--GEYVAVSSRGSFYSTWEPG--- 192 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTT--SCEEEEETTSSEEEEECTT---
T ss_pred CCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCC--CcEEEEECCCcEEEEeCCC---
Confidence 335578888877777776654 554422 122343333332456668899999987 6777666443333334421
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeec
Q 004293 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (763)
+.. +..+ -......+..+.+.++ +.++ .++.+|.+++.+...++ -|.. +
T Consensus 193 G~t-----W~~~--~~~~~~~~~~~~~~~~-g~~~-~~~~~G~~~~s~~D~G~---------------tW~~-------~ 241 (327)
T 2xbg_A 193 QTA-----WEPH--NRTTSRRLHNMGFTPD-GRLW-MIVNGGKIAFSDPDNSE---------------NWGE-------L 241 (327)
T ss_dssp CSS-----CEEE--ECCSSSCEEEEEECTT-SCEE-EEETTTEEEEEETTEEE---------------EECC-------C
T ss_pred CCc-----eeEC--CCCCCCccceeEECCC-CCEE-EEeCCceEEEecCCCCC---------------eeEe-------c
Confidence 111 1212 1234567888999884 4544 55667887776422111 0100 0
Q ss_pred cCC-CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004293 209 ADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 209 ~~~-~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
... ......+.++++.++ +.+++++ .++.| ++....++.-..+... ..... .+..|.|
T Consensus 242 ~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-----------------~~~~~-~~~~v~~ 300 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-----------------KKVPS-NFYKILF 300 (327)
T ss_dssp BCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEECGGG-----------------TTSSS-CCCEEEE
T ss_pred cCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEcCcc-----------------CCCCC-CeEEEEE
Confidence 000 011234788889885 5555554 46766 3444444322111000 00111 3778888
Q ss_pred cCCCCEEEEEeCCCeEEEEEC
Q 004293 288 SPNGEEVLLSYSGEHVYLMDV 308 (763)
Q Consensus 288 spdg~~l~~~s~d~~i~iwd~ 308 (763)
.+++. +++++.+|.|.-++-
T Consensus 301 ~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 301 FSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EETTE-EEEECSTTEEEEECC
T ss_pred ECCCc-eEEEcCCceEEEEcC
Confidence 75554 777788898877754
No 293
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.18 E-value=1.5 Score=45.47 Aligned_cols=224 Identities=11% Similarity=0.141 Sum_probs=128.8
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004293 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 55 ~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 134 (763)
+.-.+|..+.||-=. ..++.|+|+++...++.+ . ....|.--.|..+ +.|+-.+ +..|+.|++...
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~-~-~~e~VvfWkWis~---~~l~lVT-~taVyHWsi~~~------- 135 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE------- 135 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEEEET---TEEEEEC-SSEEEEEESSSS-------
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce-e-cCCCceEEEecCC---CeEEEEc-CCeeEEecccCC-------
Confidence 344578888888665 579999999999998887 3 3456777788776 4666555 578999999742
Q ss_pred CCCCCceeeeccc----CceeEEEEecCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004293 135 NAITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 135 ~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
..|.+.|..|. ..|..-..+++...++++|- -.|.+.+|..+.+... .+
T Consensus 136 --s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-------------~i------ 194 (494)
T 1bpo_A 136 --SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-------------PI------ 194 (494)
T ss_dssp --CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-------------EE------
T ss_pred --CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-------------hh------
Confidence 24566666553 35666667774433444432 2467888887765411 11
Q ss_pred eeeccCCCCCccceEEEEEe--CCCCcEEEEEeC---CCcEEEEeCCCCC-CCcccCCCCCCCCcccccccccccCCCCC
Q 004293 205 KRSLADPPKQTLSLKSCDIS--STRPHLLLVGGS---DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~--p~~~~~l~sgs~---Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
.+|......+.+. +....+|+-+.. .+.++|-++.... ....+. ...+..+.| +....
T Consensus 195 -------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-----kk~vdv~fp----pe~~~ 258 (494)
T 1bpo_A 195 -------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFP----PEAQN 258 (494)
T ss_dssp -------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-----CEEEECCCC----TTSTT
T ss_pred -------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-----ceeeeeeCC----ccccc
Confidence 1222222222221 110122222222 2688888885421 100110 011111111 12223
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCCccceEeecCCCCeeeeec
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 330 (763)
+ ---++..++.-..++.-+.-|.|++||+.++.......-..+.+-..+..
T Consensus 259 D-FPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~ 309 (494)
T 1bpo_A 259 D-FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (494)
T ss_dssp C-CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred C-ceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence 3 25578889988899999999999999999987554444444444333333
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.01 E-value=0.43 Score=50.60 Aligned_cols=234 Identities=7% Similarity=0.016 Sum_probs=116.1
Q ss_pred ccCceEEEEeCCCCCEEEEEeCC---Cc-EEEEeCCCCeE-EEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEE
Q 004293 49 HQGCVNAISWNSKGSLLISGSDD---TH-INVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (763)
Q Consensus 49 H~~~V~~l~fsp~g~~Lasgs~D---~~-v~iWd~~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd 123 (763)
.......|+|+++|+++++.... .. +...+...+.. ...+ . .......++++|.. +.++++-..++.|+.+|
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~-~~~~P~giavd~~~-G~lyv~d~~~~~V~~~d 256 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL-C-NARGAKTCAVHPQN-GKIYYTRYHHAMISSYD 256 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE-E-ECSSBCCCEECTTT-CCEEECBTTCSEEEEEC
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc-c-ccCCCCEEEEeCCC-CeEEEEECCCCEEEEEE
Confidence 34568899999999955554321 12 33333322211 1112 1 22345678899942 67777766778899998
Q ss_pred CCCCCCCCCCCCCCCCceee-e-cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEec-
Q 004293 124 LSRFSGRGLDDNAITPSALY-Q-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL- 200 (763)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 200 (763)
...+.. ...+ . +.......|+|+|++..++++-...+.|+.+++....... .....+...
T Consensus 257 ~~~g~~----------~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-------~~~~~~ag~~ 319 (433)
T 4hw6_A 257 PATGTL----------TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-------AVPYIVCGQH 319 (433)
T ss_dssp TTTCCE----------EEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-------CCCEEEEECT
T ss_pred CCCCeE----------EEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-------CcEEEEEecC
Confidence 874321 0111 1 1122234699999554366666677899998876321100 000111110
Q ss_pred C-CCceeeccCCCCCccceEEEEE---------eCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccc
Q 004293 201 R-CGAKRSLADPPKQTLSLKSCDI---------SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (763)
Q Consensus 201 ~-~~~~~~~~~~~~~~~~v~~i~~---------~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (763)
. .+.... ............+++ .++ ++++++-...+.|+.++. ++. +.++..... .+...+...
T Consensus 320 g~~g~~dg-~~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~--~~~~G~~dG 393 (433)
T 4hw6_A 320 SSPGWVDG-MGTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGN--SREWGYVDG 393 (433)
T ss_dssp TCCCCBCE-EGGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECT-TSE-EEEEECCCT--TCSSCCBCE
T ss_pred CCCccCCC-cccceEEcCCccEEEEccccccccCCC-CcEEEEECCCCEEEEECC-CCC-EEEEEeCCC--CCccccCCC
Confidence 0 000000 000011234567888 554 566666666788999985 332 222111100 000000000
Q ss_pred cccCCCCCccceeEEEEc-CCCCEEEEEeCCCeEEEEECC
Q 004293 271 HLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 271 ~~~~~g~~~~~i~~v~~s-pdg~~l~~~s~d~~i~iwd~~ 309 (763)
.......-. .-..|+++ ++|.++++=...+.|+.++++
T Consensus 394 ~~~~~~~~~-~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 394 ELRSQALFN-HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ETTTTCBCS-SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccccccEeC-CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 000000111 36789999 566655555568889888764
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.96 E-value=0.027 Score=64.13 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=97.9
Q ss_pred eEEEEeCC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-CcEEEEECCCCCCC
Q 004293 53 VNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGR 130 (763)
Q Consensus 53 V~~l~fsp-~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-g~I~iwd~~~~~~~ 130 (763)
...|++.+ .++++++-...+.|.+.++........+ .........+++.|.. +.++++-... +.|..+++....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~-- 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD-- 530 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCC--
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCC--
Confidence 45688875 4555566566789999998765433333 3333456889999973 4444443333 677777765311
Q ss_pred CCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeecc
Q 004293 131 GLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (763)
Q Consensus 131 ~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (763)
...+ .......+.|+|+|+++.++++-+..+.|..+|+..... ..+..
T Consensus 531 ---------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~---------- 579 (699)
T 1n7d_A 531 ---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILE---------- 579 (699)
T ss_dssp ---------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECC----------
T ss_pred ---------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEe----------
Confidence 1111 122345678999997778887877788999999864321 11111
Q ss_pred CCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCccc
Q 004293 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (763)
Q Consensus 210 ~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~ 254 (763)
..........|++..+ .++++-...+.|..+|..+++.+..+
T Consensus 580 -~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 580 -DEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp -CSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred -cCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 0011122334555543 46666666788999998777654444
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.85 E-value=1.4 Score=49.17 Aligned_cols=201 Identities=7% Similarity=-0.004 Sum_probs=119.1
Q ss_pred CceEEEEeCCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCC
Q 004293 51 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (763)
Q Consensus 51 ~~V~~l~fsp~g-~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~ 129 (763)
..+.+|+|.+.+ .++++-...+.|+.+++........+ ......+..+++.+.+ ++++++-+..+.|.+.++....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~- 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM- 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence 346788998854 44555556788999988764433333 3333567889998753 5677776778899999987421
Q ss_pred CCCCCCCCCCceee-ecccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceee
Q 004293 130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (763)
Q Consensus 130 ~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (763)
...+ ...-.....|++.|..+.++++-. ..+.|...++..... ..+.
T Consensus 426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~------------~~l~--------- 474 (619)
T 3s94_A 426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR------------VVLV--------- 474 (619)
T ss_dssp ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEE---------
T ss_pred ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc------------EEEE---------
Confidence 2222 223456889999996666666643 235677776653321 1111
Q ss_pred ccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEE
Q 004293 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (763)
Q Consensus 208 ~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~ 287 (763)
.......+.+++++..+.++++=+..+.|..+++.... ...+ ....+ . ...+|++
T Consensus 475 ----~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~-------------~~~~l---~----~P~glav 529 (619)
T 3s94_A 475 ----NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-RRVL-------------VEDKI---P----HIFGFTL 529 (619)
T ss_dssp ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEE-------------EECCC---C----SSCCEEE
T ss_pred ----eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-eEEE-------------eccCC---C----CcEEEEE
Confidence 01234578999998755444444556789889886432 1111 00000 0 1234555
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCC
Q 004293 288 SPNGEEVLLSYS-GEHVYLMDVNHAG 312 (763)
Q Consensus 288 spdg~~l~~~s~-d~~i~iwd~~~~~ 312 (763)
..+ +|+.+.. .+.|...+..++.
T Consensus 530 ~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 530 LGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp ETT--EEEEECTTSSCEEEEESSSCC
T ss_pred ECC--EEEEeecCCCeEEEEEcCCCc
Confidence 433 5555544 6788888888864
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.82 E-value=3.1 Score=46.24 Aligned_cols=205 Identities=9% Similarity=0.058 Sum_probs=121.2
Q ss_pred cCceEEEEeCCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCC
Q 004293 50 QGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~La-sgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~ 128 (763)
-+.+..|+|++.+..|. +-...+.|..+++........+.......+..+++.+.+ ++++++-...+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC
Confidence 34578999998665554 545567899999876532222213333578999999963 5666666678899999987421
Q ss_pred CCCCCCCCCCCceeee-cccCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004293 129 GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
...+. ........|++.|.++.+++|-- ..+.|...++..... ..+..
T Consensus 118 -----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~------- 167 (619)
T 3s94_A 118 -----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN------- 167 (619)
T ss_dssp -----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC-------
T ss_pred -----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe-------
Confidence 22222 34456789999997666666642 245676667654321 11110
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEE
Q 004293 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~ 286 (763)
......+.++++++++.++++=...+.|..+|+..... ..+ ....+ . ...+|+
T Consensus 168 ------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~-------------~~~~~---~----~P~gi~ 220 (619)
T 3s94_A 168 ------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV-------------VKGSL---P----HPFALT 220 (619)
T ss_dssp ------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C-----------------------------CCCEE
T ss_pred ------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEE-------------EeCCC---C----CceEEE
Confidence 11245689999997565556656677899988864221 111 00000 0 134567
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCCcc
Q 004293 287 FSPNGEEVLLSY-SGEHVYLMDVNHAGGR 314 (763)
Q Consensus 287 ~spdg~~l~~~s-~d~~i~iwd~~~~~~~ 314 (763)
+..+ .|+.+. ..+.|...|..+++..
T Consensus 221 ~~~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 221 LFED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ESSS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred EeCC--EEEEecCCCCEEEEEECCCCccc
Confidence 7655 455554 4788999999886543
No 298
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.78 E-value=1.5 Score=42.34 Aligned_cols=168 Identities=9% Similarity=0.084 Sum_probs=99.5
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE---EEEEcc-----CCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~---~~~~~~-----~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
.....|++.+++.++++.-.++.+.++++..... +..... ........++|.|. ++.|.++.......||
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVY 147 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEE
Confidence 4577888988888777765678899998765432 222211 23345689999999 4555556555555555
Q ss_pred ECCCCCCCCCCCCCCCCceeee-------cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004293 123 NLSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 195 (763)
.+...... ..+..+. .+...+..++++|..+++++.....+.|.++|....- .
T Consensus 148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~ 207 (255)
T 3qqz_A 148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I 207 (255)
T ss_dssp EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence 55410000 0111111 1234578999999888888888888899999966431 2
Q ss_pred EEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCC
Q 004293 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (763)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~ 246 (763)
..+.+..+... ........-.|+|.++ ++ |++.+.-+.++.|...
T Consensus 208 ~~~~L~~g~~~----l~~~~~qpEGia~d~~-G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 208 GEMSLTKGSRG----LSHNIKQAEGVAMDAS-GN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEECSTTGGG----CSSCCCSEEEEEECTT-CC-EEEEETTTEEEEEEC-
T ss_pred EEEEcCCccCC----cccccCCCCeeEECCC-CC-EEEEcCCceEEEEEec
Confidence 23333322100 0011234568999997 56 4445777777776543
No 299
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.70 E-value=0.12 Score=54.86 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=92.0
Q ss_pred ceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC---
Q 004293 95 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--- 170 (763)
Q Consensus 95 ~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--- 170 (763)
....++|+| + +..|..+...+.|+.+|+.... +..+.........|+|++++..++++...++
T Consensus 138 ~P~~lavdp~~--~g~Lyv~d~~~~I~~id~~~~~-----------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKN--HNHLYLVGEQHPTRLIDFEKEY-----------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTE--EEEEEEEEBTEEEEEEETTTTE-----------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCC--CCeEEEEeCCCcEEEEECCCCE-----------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 457899997 4 2445555444889999987521 3334345566889999994432555544322
Q ss_pred -cEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004293 171 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 171 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
.+.+++. .+... ....+. .......++++|+++.++++-..++.|..||.....
T Consensus 205 ~~v~~~~~-~g~~~---------~~~~l~---------------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 205 PNNYILTR-ESGFK---------VITELT---------------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEEEEEEG-GGTSC---------SEEEEE---------------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred ceEEEEeC-CCcee---------eeeeec---------------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 2333332 22210 000110 012346788999657777777778899999987542
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004293 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 310 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~~~ 310 (763)
... .+ . .+. ...-..++|+|+|++|+.+. ..+.|..++.+.
T Consensus 260 ~~~-------------~~---~---~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 260 TTP-------------LF---T---IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEE-------------EE---E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEE-------------EE---E---cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 100 00 0 000 11367899999999666554 578999988764
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.51 E-value=6.1 Score=47.38 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=54.3
Q ss_pred cCceEEEEeCCC------CCEEEEEeC-CCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEE
Q 004293 50 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (763)
Q Consensus 50 ~~~V~~l~fsp~------g~~Lasgs~-D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iw 122 (763)
.+.|.|+++.|. +.++|.|.. |++|+|+++.+.+.+....-+-...+.++.+..-....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 369999996 9999999999877665432222234555555533214678899999998777
Q ss_pred ECCC
Q 004293 123 NLSR 126 (763)
Q Consensus 123 d~~~ 126 (763)
.+..
T Consensus 633 ~~d~ 636 (1158)
T 3ei3_A 633 GLNI 636 (1158)
T ss_dssp EECT
T ss_pred EEcC
Confidence 6654
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.47 E-value=0.17 Score=52.33 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=80.4
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe------------EEEEEccC-----CCCceEEEEEeeCC-CCcEEEEE
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPET-SDELVVSG 113 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~------------~~~~~~~~-----h~~~V~~v~~~p~~-~~~~l~s~ 113 (763)
.|..+..||+|++||..+. ..|.|-.+..+. ..+.+.-+ ...+|..+.|+|-+ ++..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 5788999999999998866 588888876321 12233212 24679999999964 14689999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEe--CCCcEEEEE
Q 004293 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD 176 (763)
Q Consensus 114 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s--~dg~i~iwd 176 (763)
..|+.|++||+.........-+.......+......|.+++|.+ ++-.|+..+ +.|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 99999999999963322110000000111222336788999988 666666655 777776553
No 302
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.28 E-value=1.4 Score=43.90 Aligned_cols=95 Identities=8% Similarity=0.133 Sum_probs=50.1
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC----CcEEEEeCCCCeEEEEEccCCCCceEEEEEee
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p 103 (763)
..+..++....++..+..+........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-.......-.++...
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 100 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA- 100 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-
Confidence 3445555555555444443322222222332 56777788754 5688999988764332211111111122222
Q ss_pred CCCCcEEEEEeCC------CcEEEEECCCC
Q 004293 104 ETSDELVVSGAGD------AEVRLFNLSRF 127 (763)
Q Consensus 104 ~~~~~~l~s~s~d------g~I~iwd~~~~ 127 (763)
+ +.+++.|+.+ ..+.+||+.+.
T Consensus 101 ~--~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 101 E--GKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 4 5788888765 45888998864
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.24 E-value=0.85 Score=46.59 Aligned_cols=194 Identities=11% Similarity=0.095 Sum_probs=104.4
Q ss_pred ceEEEEeCCCCCEEEEEe------------CCCcEEEEeCCC--CeEE-EEEccC-----CCCceEEEEEeeCCCCc--E
Q 004293 52 CVNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKLL-HSIETG-----HSANVFCTKFVPETSDE--L 109 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs------------~D~~v~iWd~~~--~~~~-~~~~~~-----h~~~V~~v~~~p~~~~~--~ 109 (763)
....+...|+|..+++++ .+|.|.++|+.+ ++.. ..+ .+ .......+.+.++.++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 456677888886655542 689999999873 2221 122 22 23577889988742132 4
Q ss_pred EEEEeC--CCcEEEEECCCCCCCCCCCCCCCCceeeecc-cCceeEEEEecCCCCEEEEEeC-----------------C
Q 004293 110 VVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE-----------------D 169 (763)
Q Consensus 110 l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~s~s~-----------------d 169 (763)
+++-.. +.+|.+|++...... ...+..+.+. -...+.+++.+ ++.+.++... .
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~------~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKS------LLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTE------EEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEECCCCCCeEEEEEEECCCCE------EEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence 444333 567889888753221 1223333322 24578899988 4555555431 1
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCC
Q 004293 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (763)
Q Consensus 170 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~ 249 (763)
|.|..+|. ++ +. .+. ......+.++|+|++..++++-+..+.|..|++....
T Consensus 203 g~vyr~d~--~~-----------~~-~~~--------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 203 SFVTYYSP--ND-----------VR-VVA--------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp EEEEEECT--TC-----------CE-EEE--------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred cEEEEEEC--Ce-----------EE-Eee--------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 23333332 11 00 010 1123468999999843444455567899999987321
Q ss_pred CCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCC
Q 004293 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG 300 (763)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~sp-dg~~l~~~s~d 300 (763)
.+.. .+.+ .+ ....-.+++.+ +|++.+++..+
T Consensus 255 ~l~~----------~~~~---~~------~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 255 TLTP----------LRVL---SF------DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp CEEE----------EEEE---EC------SSEEEEEEECTTTCCEEEEEESC
T ss_pred cEec----------CEEE---eC------CCCCceEEEeCCCCcEEEEecCC
Confidence 1110 0111 01 11367788888 58866655533
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.67 Score=49.59 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=98.0
Q ss_pred eEEEEeCCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEccC--CCCceEEEEE-------eeCCCCcEEEEEeCCC-c--
Q 004293 53 VNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKF-------VPETSDELVVSGAGDA-E-- 118 (763)
Q Consensus 53 V~~l~fsp~--g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~--h~~~V~~v~~-------~p~~~~~~l~s~s~dg-~-- 118 (763)
...|+|.|. ++++++-...+.|++.|++++.....+..+ .......++| +++ +..|+.+...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCcc
Confidence 568999983 445555555578999999887765544221 1235899999 998 67555555543 2
Q ss_pred ----EEEEECCCCCCCCCCCCCCCC-ceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECC-------CCCCCCCC
Q 004293 119 ----VRLFNLSRFSGRGLDDNAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPPA 186 (763)
Q Consensus 119 ----I~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~ 186 (763)
|.+.+... .+... ... ...+.. ......++++|+++.++++-..++.|..+|+. ++..-...
T Consensus 219 ~~~~V~~i~r~~-~G~~~----~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 219 ESPSVYIIKRNA-DGTFD----DRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp GEEEEEEEECCT-TSCCS----TTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred cCceEEEEecCC-CCcee----ecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 55665332 11110 000 012222 23456788999777888888888999999987 44320000
Q ss_pred CCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcE-EEEEeCCCcEEEEeCC
Q 004293 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRR 246 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~-l~sgs~Dg~i~iwd~~ 246 (763)
..........+... ......+.|+|+|+ +++ +++=+....|+.++..
T Consensus 293 ~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 293 VKNNPNTFKQLFTI------------ADPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGGCTTTEEEEEEC------------SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccceeEec------------CCCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence 00000000111111 11234578999998 564 4444566788886654
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.19 E-value=1.1 Score=44.69 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=54.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC-----cEEEEECCCCCCC
Q 004293 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRFSGR 130 (763)
Q Consensus 61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg-----~I~iwd~~~~~~~ 130 (763)
++.+++.|+.+ ..+.+||..+.+-...-.......-.++... + +.+++.|+.++ .+.+||+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W- 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSNEW- 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTTEE-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCCeE-
Confidence 57777777754 3588999988764332111111111122222 4 57888887653 477888875332
Q ss_pred CCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-------CcEEEEECCCCC
Q 004293 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-------GTLRQHDFRQGS 181 (763)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-------g~i~iwd~~~~~ 181 (763)
..+..+..... -.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 137 -------~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 137 -------FHVAPMNTRRS-SVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp -------EEECCCSSCCB-SCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred -------eecCCCCCccc-CceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 11222211111 1222222 44666666643 347788876653
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.82 E-value=0.66 Score=49.65 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=94.0
Q ss_pred ceEEEEEee-CCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeec----ccCceeEEEE-------ecCCCCE
Q 004293 95 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAV-------EVGNPHV 162 (763)
Q Consensus 95 ~V~~v~~~p-~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~-------sp~~~~~ 162 (763)
....|+|.| +. ++++++....+.|++.|+.... +..+.. .......|+| ++++..+
T Consensus 140 ~p~~la~dp~~~-~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNK-DHLYICYDGHKAIQLIDLKNRM-----------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEE-EEEEEEEETEEEEEEEETTTTE-----------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCC-CEEEEEECCCCeEEEEECCCCE-----------EEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence 357899998 32 4566665555778888887532 333321 2235899999 9854335
Q ss_pred EEEEeCCCc------EEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004293 163 VWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (763)
Q Consensus 163 l~s~s~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~ 236 (763)
+++-..++. |.+++.......... . . ...+.. ......++++|+++.++++-..
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~--~--~-~~~v~~---------------~~~p~giavdp~~g~LYvtd~~ 267 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDR--S--D-IQLIAA---------------YKQCNGATIHPINGELYFNSYE 267 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTT--S--C-EEEEEE---------------ESCCCCEEECTTTCCEEEEETT
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeec--c--c-ceeecc---------------CCCceEEEEcCCCCeEEEEECC
Confidence 544443322 666663321100000 0 0 001100 1123577889976777888888
Q ss_pred CCcEEEEeCC-------CCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 004293 237 DAFARLYDRR-------MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV 308 (763)
Q Consensus 237 Dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s-~d~~i~iwd~ 308 (763)
++.|..+|+. ++..-..... ..+. ....+ ...+. ...-..|+|+|+|++|+.+. ..+.|+.++.
T Consensus 268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~-~~~g-~~~~l-----~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 268 KGQVFRLDLVDYFKTIKNGGSWDPIVK-NNPN-TFKQL-----FTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTEEEEECHHHHHHHHHTTCCCCCBGG-GCTT-TEEEE-----EECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEecccccccccCceeeccccc-cccc-cccee-----EecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 8999999987 4432000000 0000 00000 00011 11357899999999666554 5788988776
Q ss_pred CC
Q 004293 309 NH 310 (763)
Q Consensus 309 ~~ 310 (763)
..
T Consensus 340 dg 341 (496)
T 3kya_A 340 DE 341 (496)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.79 E-value=1.3 Score=44.12 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=66.2
Q ss_pred cccccchhhhhccccceeeccccCceEEEEeCCCCCEEEEEeCC-----CcEEEEeCCCCe---EEE--EEccCCCCceE
Q 004293 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRK---LLH--SIETGHSANVF 97 (763)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~gH~~~V~~l~fsp~g~~Lasgs~D-----~~v~iWd~~~~~---~~~--~~~~~h~~~V~ 97 (763)
..+..++....++..+..+........++. -++++++.|+.+ ..+.+||+.+.+ -.. .+. ......
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~~- 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGLA- 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBSC-
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccce-
Confidence 344455544444444433332222222222 256777777754 468899988765 222 221 111111
Q ss_pred EEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC---
Q 004293 98 CTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--- 169 (763)
Q Consensus 98 ~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d--- 169 (763)
++... + +.+++.|+.+ ..+.+||+.+... ..+..+..... -.+++.. ++.+++.|+.+
T Consensus 107 ~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~~~W--------~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 107 GATTL-G--DMIYVSGGFDGSRRHTSMERYDPNIDQW--------SMLGDMQTARE-GAGLVVA--SGVIYCLGGYDGLN 172 (301)
T ss_dssp EEEEE-T--TEEEEECCBCSSCBCCEEEEEETTTTEE--------EEEEECSSCCB-SCEEEEE--TTEEEEECCBCSSC
T ss_pred eEEEE-C--CEEEEEcccCCCcccceEEEEcCCCCeE--------EECCCCCCCcc-cceEEEE--CCEEEEECCCCCCc
Confidence 22222 4 5777777654 3588888876331 11222221111 1222222 45677777654
Q ss_pred --CcEEEEECCCCC
Q 004293 170 --GTLRQHDFRQGS 181 (763)
Q Consensus 170 --g~i~iwd~~~~~ 181 (763)
..+.+||+.+.+
T Consensus 173 ~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 173 ILNSVEKYDPHTGH 186 (301)
T ss_dssp BCCCEEEEETTTTE
T ss_pred ccceEEEEeCCCCc
Confidence 357778876653
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.59 E-value=1.7 Score=44.91 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=91.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecc----cCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCC
Q 004293 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~ 182 (763)
+..++.+- ++.||.-++.... ..+.+..- -..|..+..+| ++.+++..+ +..|.|-.+..+..
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~----------~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDS----------LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCS----------SCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCS
T ss_pred CCEEEEEE-CCEEEEEECCCCC----------cceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccc
Confidence 44455443 4677777776421 12333221 22578899999 678887765 46899999874432
Q ss_pred CCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC--CcEEEEEeCCCcEEEEeCCCCCCCcc-cCCCCC
Q 004293 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMS 259 (763)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~sgs~Dg~i~iwd~~~~~~~~~-~~~~~~ 259 (763)
...........+...+.+..- ......+|..+.|+|-+ +..|++-..|+.||+||+........ +.
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~-------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---- 167 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE-------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---- 167 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC-------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES----
T ss_pred cCcccccccccceeEEEcCCc-------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh----
Confidence 211000001112222222110 00124679999999964 34899999999999999986321111 10
Q ss_pred CCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCeEEEE
Q 004293 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLM 306 (763)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s--~d~~i~iw 306 (763)
.....| ...... ..|.+++|.+++-.|.+.+ .+|-|+-.
T Consensus 168 --k~~~~f-----g~d~~~-~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 168 --KPNNSF-----GLDARV-NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp --CCCSEE-----ESCSSC-CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred --cccccc-----CCCccc-ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 000011 001111 2589999999776666644 55655544
No 309
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.11 E-value=1.8 Score=40.48 Aligned_cols=148 Identities=12% Similarity=-0.031 Sum_probs=75.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004293 61 KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (763)
Q Consensus 61 ~g~~Lasgs~D~~v~iWd~~~~~------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 134 (763)
...+|+....| +|+.=....+. ...++-.+-=..+..++|+|+ +.+.+. .+|.+.-.+..+......
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~~~W-- 75 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDNDNW-- 75 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTTCCH--
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCcccc--
Confidence 34567777777 66665554433 222331111246779999997 776666 567665555543211110
Q ss_pred CCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCC
Q 004293 135 NAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (763)
Q Consensus 135 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (763)
......+- +... -..+.|.| ++.+.++ .||.|+-++-.+.... .. +.+ + .....
T Consensus 76 --~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~~--------~W---l~~---a----~~vg~ 131 (236)
T 1tl2_A 76 --MGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPPQSDTD--------NW---IAR---A----TEVGS 131 (236)
T ss_dssp --HHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC--------CH---HHH---S----EEEEC
T ss_pred --cccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCCcCCCC--------ce---ecc---c----cEecc
Confidence 00000000 1111 37888998 5566655 5699988874332210 00 000 0 00000
Q ss_pred CCccceEEEEEeCCCCcEEEEEeCCCcEEE
Q 004293 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (763)
Q Consensus 213 ~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~i 242 (763)
..-..+..|.|.|+ +.+.++. |+.++-
T Consensus 132 ~gw~~~~~lff~p~-G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 132 GGWSGFKFLFFHPN-GYLYAVH--GQQFYK 158 (236)
T ss_dssp SSGGGEEEEEECTT-SCEEEEE--TTEEEE
T ss_pred CCCCceEEEEECCC-ceEEEEe--CCcEEe
Confidence 11246789999997 6666665 777543
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.96 E-value=6.2 Score=40.20 Aligned_cols=107 Identities=9% Similarity=0.059 Sum_probs=60.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEc--cCCCCceEEEEEeeC---CCCcEEEEEeCC-----Cc
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----AE 118 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~--~~h~~~V~~v~~~p~---~~~~~l~s~s~d-----g~ 118 (763)
..-..|+|.|+|+++++ ..++.|++++ .++. +..+. .........|+|+|+ + +.++++-... +.
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCccE
Confidence 35679999999996665 5569999998 4432 22221 112356899999997 3 4555554433 56
Q ss_pred EEEEECCCCCCCCCCCCCCCC-ceeee---cccCceeEEEEecCCCCEEEEEe
Q 004293 119 VRLFNLSRFSGRGLDDNAITP-SALYQ---CHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~-~~~~~---~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
|..++..... .. ..+. +..+. +.......|+|.|+ +.++++.+
T Consensus 107 v~r~~~~~~~--~~---~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGER--GV---LDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVTTG 153 (352)
T ss_dssp EEEEEECSSC--EE---EEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEECC
T ss_pred EEEEEeCCCC--cC---ceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEEEC
Confidence 7777776311 00 0011 11122 11123468999994 46666644
No 311
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.93 E-value=3.8 Score=40.86 Aligned_cols=111 Identities=9% Similarity=0.011 Sum_probs=55.7
Q ss_pred EeCCCCCEEEEEeC-----C------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC--------C
Q 004293 57 SWNSKGSLLISGSD-----D------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------A 117 (763)
Q Consensus 57 ~fsp~g~~Lasgs~-----D------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d--------g 117 (763)
....++++++.|+. . ..+.+||..+.+-...-.......-.++... + +.+++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence 33457888888873 1 1277889888764321100011001122222 3 5777777742 4
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC-C-----CcEEEEECCCCC
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-D-----GTLRQHDFRQGS 181 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~-d-----g~i~iwd~~~~~ 181 (763)
.+.+||+.+.... .+..+..... -.+++.. ++.+++.|+. + ..+.+||+.+.+
T Consensus 118 ~~~~~d~~~~~W~--------~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 118 SVMCYDRLSFKWG--------ESDPLPYVVY-GHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CEEEEETTTTEEE--------ECCCCSSCCB-SCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred eEEEECCCCCcEe--------ECCCCCCccc-ceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 5888998864321 1222211111 1222222 4567777776 2 367788877653
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.48 E-value=2.9 Score=50.18 Aligned_cols=212 Identities=10% Similarity=0.116 Sum_probs=116.6
Q ss_pred EeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004293 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 136 (763)
Q Consensus 57 ~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 136 (763)
-.+|..+.||.=. ..++.|+|+++...++.+ . ...+|.--.|... +.|+-.+ +..|..|++...
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~-~-~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~--------- 135 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE--------- 135 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccc-c-cCCCceEEEecCC---CeeEEEc-CCeEEEeccCCC---------
Confidence 3467777777654 579999999998888776 2 3456777777765 4555544 568999999641
Q ss_pred CCCceeeecc----cCceeEEEEecCCCCEEEEEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCcee
Q 004293 137 ITPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (763)
Q Consensus 137 ~~~~~~~~~h----~~~v~~l~~sp~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (763)
..|.+.|..| ...|..-..+++...++++|- -.|.+.+|....+... ...+|..+- ......
T Consensus 136 s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F---~~~~~~--- 207 (1630)
T 1xi4_A 136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASF---AQFKME--- 207 (1630)
T ss_pred CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhh---heeccC---
Confidence 1455555555 345666677774444444442 3477888887665421 111111110 000000
Q ss_pred eccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCC-CCCcccCCCCCCCCcccccccccccCCCCCccceeEE
Q 004293 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (763)
Q Consensus 207 ~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v 285 (763)
...+...+.|.+.-. . ..+.++|-++... .....+. ...+..+.|. ....+. -.++
T Consensus 208 ----~~~~~~~l~~f~~~~--~-------~g~kLhi~Ei~~~~~~~~~f~-----kk~~~~~~~~----~~~~Df-pv~~ 264 (1630)
T 1xi4_A 208 ----GNAEESTLFCFAVRG--Q-------AGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPP----EAQNDF-PVAM 264 (1630)
T ss_pred ----CCCCCceEEEEEEec--C-------CCceEEEEecCCCccCCCCCc-----cccccccCCc----ccccCc-ceEE
Confidence 000111122222211 1 1267888888543 1111110 0111112111 122232 4567
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCccc
Q 004293 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (763)
Q Consensus 286 ~~spdg~~l~~~s~d~~i~iwd~~~~~~~~ 315 (763)
..++.-..+..-+.-|.|++||+.++....
T Consensus 265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EeccccCEEEEEecCceEEEEecccchhhh
Confidence 788888889999999999999999976443
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.44 E-value=2.2 Score=43.55 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=25.1
Q ss_pred eeEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 004293 282 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~-d~~i~iwd~~~ 310 (763)
-+.++|+||+++|+.+.. .+.|+.|++..
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 688999999998887765 78999999874
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.41 E-value=2.8 Score=41.78 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=54.3
Q ss_pred CCCEEEEEeC----C-----CcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECC
Q 004293 61 KGSLLISGSD----D-----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLS 125 (763)
Q Consensus 61 ~g~~Lasgs~----D-----~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~ 125 (763)
++.+++.|+. + ..+.+||+.+.+-...-. ....... ++... + +.+++.|+.+ ..+.+||+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI-D--GHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE-T--TEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE-C--CEEEEEcCCCCCcccccEEEECCC
Confidence 5677777765 2 468899998875432210 1111111 22222 4 5777777643 358888887
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004293 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~ 181 (763)
+..... +..+...... .+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 146 ~~~W~~--------~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 146 RDEWHL--------VAPMLTRRIG-VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TTEEEE--------CCCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCeEeE--------CCCCCccccc-eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 643211 1112111111 122222 44677777654 357778876653
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.43 E-value=3.5 Score=40.84 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-------CcEEEEECCCCC
Q 004293 61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS 128 (763)
Q Consensus 61 ~g~~Lasgs~D~-----~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-------g~I~iwd~~~~~ 128 (763)
++++++.|+.++ .+.+||+.+.+-...-.......-.++... + +.+++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 577777887653 477889887764332111111111122222 3 5677777643 358889987643
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004293 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~ 181 (763)
.. .+..+...... .+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 185 W~--------~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 WT--------YIAEMSTRRSG-AGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EE--------EECCCSSCCBS-CEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EE--------ECCCCcccccc-ccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 21 12112111111 223222 45777777764 367888877653
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.22 E-value=3.2 Score=41.08 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=56.1
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004293 61 KGSLLISGSDD-----THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFS 128 (763)
Q Consensus 61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~ 128 (763)
++++++.|+.+ ..+.+||+.+.+-.. .+... ... .++... + +.+++.|+.+ ..+.+||+.+..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REG-AGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBS-CEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-ccc-ceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCc
Confidence 57777777654 358889988775332 22111 111 122222 4 5777877754 458889987643
Q ss_pred CCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004293 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (763)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~ 181 (763)
. ..+..+..... -.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 187 W--------~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 187 W--------TNVTPMATKRS-GAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp E--------EEECCCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred E--------EeCCCCCcccc-cceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 2 11211211111 1122222 45677777764 468888887654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.21 E-value=3.2 Score=41.25 Aligned_cols=107 Identities=7% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC---------CCcEEEEECC
Q 004293 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLS 125 (763)
Q Consensus 61 ~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~---------dg~I~iwd~~ 125 (763)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++.. -+ +.+++.|+. -..+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-AN--GLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET--TEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-EC--CEEEEECCCCCCCCcccccceEEEeCCC
Confidence 57777888765 468899998876433210011111112222 24 567777764 3458899988
Q ss_pred CCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004293 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (763)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~ 181 (763)
+... ..+..+.... .-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 178 ~~~W--------~~~~~~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 178 TETW--------TELCPMIEAR-KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTEE--------EEECCCSSCC-BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCeE--------EECCCccchh-hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 6432 1122221111 11222222 44677777654 357788877653
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=91.30 E-value=14 Score=37.58 Aligned_cols=111 Identities=12% Similarity=0.012 Sum_probs=61.3
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc--cCCCCceEEEEEeeC---CCCcEEEEEeC---C----
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D---- 116 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~--~~h~~~V~~v~~~p~---~~~~~l~s~s~---d---- 116 (763)
-.....|+|.|+|+++++ ..++.|+++|. +++ .+..+. .........|+|+|+ . +.++++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcc
Confidence 345789999999986665 55699999973 454 222221 112356889999996 3 455555442 3
Q ss_pred CcEEEEECCCCCCCCCCCCCCCCc-eeee-cccCceeEEEEecCCCCEEEEEe
Q 004293 117 AEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSAS 167 (763)
Q Consensus 117 g~I~iwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~sp~~~~~l~s~s 167 (763)
..|..|+......... ..+.+ ..+. ........|+|.| ++.++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECT-TSCEEEECC
T ss_pred eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 5677777654211000 00111 1121 1112346799999 456666644
No 319
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.59 E-value=14 Score=36.55 Aligned_cols=110 Identities=9% Similarity=0.027 Sum_probs=54.1
Q ss_pred eCCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCC-------CcE
Q 004293 58 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV 119 (763)
Q Consensus 58 fsp~g~~Lasgs~----D~-------~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~d-------g~I 119 (763)
...++.+++.|+. ++ .+.++|..+.+-...-.......-.++... + +.+++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence 3457888888873 12 177889887754322100111111122222 3 5778888764 247
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC------CCcEEEEECCCCC
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGS 181 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~------dg~i~iwd~~~~~ 181 (763)
.+||+.+.... .+..+..... -.+++. . ++.+++.|+. -..+.+||+.+.+
T Consensus 130 ~~yd~~~~~W~--------~~~~~p~~r~-~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 130 LCYDPVAAKWS--------EVKNLPIKVY-GHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp EEEETTTTEEE--------EECCCSSCEE-SCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred EEEeCCCCCEe--------ECCCCCCccc-ccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 78888763321 1111111111 112222 2 4566667664 2357888877653
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=89.95 E-value=5.6 Score=39.59 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=55.6
Q ss_pred CCCEEEEEeCC--------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC-C-----CcEEEEECCC
Q 004293 61 KGSLLISGSDD--------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-D-----AEVRLFNLSR 126 (763)
Q Consensus 61 ~g~~Lasgs~D--------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~-d-----g~I~iwd~~~ 126 (763)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++.. .+ +.+++.|+. + ..+.+||+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HM--DLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET--TEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-EC--CEEEEEeCCCCCCcccceEEEEeCCC
Confidence 56777777742 458899998875332110011111112222 33 577777776 2 4588999886
Q ss_pred CCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCCC
Q 004293 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS 181 (763)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----~i~iwd~~~~~ 181 (763)
.... .+..+..... -.+++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 175 ~~W~--------~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 175 FEWK--------ELAPMQTARS-LFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TEEE--------ECCCCSSCCB-SCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CeEE--------ECCCCCCchh-ceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 4321 1222211111 1222222 457777887654 47778877653
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.89 E-value=9.8 Score=38.50 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=47.7
Q ss_pred CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCce----eeecccCceeEEEEecC---CCCEEE
Q 004293 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVW 164 (763)
Q Consensus 92 h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~sp~---~~~~l~ 164 (763)
.-.....|+|.|+ +.++++--..|.|++++...+.. ..+. .+.........|+++|+ ++.+.+
T Consensus 30 gL~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 30 GLNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp CCSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CCCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 3456789999999 77777765589999987653221 1111 11223556889999984 444444
Q ss_pred EEe--CCCcEEEEECCC
Q 004293 165 SAS--EDGTLRQHDFRQ 179 (763)
Q Consensus 165 s~s--~dg~i~iwd~~~ 179 (763)
+-+ .+..|.-|.+..
T Consensus 100 ~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 100 YFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECSSSEEEEEEEBCT
T ss_pred EEecCCCCEEEEEEeCC
Confidence 322 345566666654
No 322
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=89.67 E-value=7.6 Score=39.18 Aligned_cols=155 Identities=8% Similarity=0.107 Sum_probs=87.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecC---CCC---EEEEEeC---CCcEEEEEC
Q 004293 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPH---VVWSASE---DGTLRQHDF 177 (763)
Q Consensus 107 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~---~l~s~s~---dg~i~iwd~ 177 (763)
..+++.....+-+.+||+.- +.++.+.. +.++.+..-|. ++. ++++... +++|.+|++
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G-----------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG-----------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS-----------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred ccEEEEEcCCCCEEEEcCCC-----------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 35677777788999999952 23555542 56777777661 111 2333333 578999977
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEE--eCCCCc-EEEEEeCCCcEEEEeCCC---CCCC
Q 004293 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPH-LLLVGGSDAFARLYDRRM---LPPL 251 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~-~l~sgs~Dg~i~iwd~~~---~~~~ 251 (763)
...... +....... ..+ ......+..+++ +|..+. ++++...+|.+..|++.. ++.-
T Consensus 107 Dp~~~~-------------l~~i~~~~-~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 107 DGKNGT-------------LQSMTDPD-HPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp CTTTCC-------------EEECSCTT-SCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred CCCCCc-------------eeeccccc-cCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 422110 11100000 000 011144566777 675443 688888899999999843 2110
Q ss_pred cccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004293 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (763)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~ 309 (763)
. +.++.|.. ...+-.++..+....|+.+-.+.-|..++..
T Consensus 170 ~---------~lVR~f~l---------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 170 G---------KKVRAFKM---------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp E---------EEEEEEEC---------SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred c---------eEEEEecC---------CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 0 11222211 1148889999998999999998665555543
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.58 E-value=6.2 Score=39.14 Aligned_cols=106 Identities=10% Similarity=0.077 Sum_probs=56.0
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEc-cCCCCceEEEEEeeCCCCcEEEEEeCC-----CcEEEEECCCCCC
Q 004293 61 KGSLLISGSDD-----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSG 129 (763)
Q Consensus 61 ~g~~Lasgs~D-----~~v~iWd~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~l~s~s~d-----g~I~iwd~~~~~~ 129 (763)
++++++.|+.+ ..+.+||+.+.+-...-. ....... ++... + +.+++.|+.+ ..+.+||+.+...
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-N--RLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-C--CEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 57777777643 368889998775432210 1111111 22222 4 5777777764 4588899876432
Q ss_pred CCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCCC
Q 004293 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 181 (763)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~d-----g~i~iwd~~~~~ 181 (763)
.. +..+..... -.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 197 ~~--------~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 197 RM--------ITAMNTIRS-GAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EE--------CCCCSSCCB-SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ee--------CCCCCCccc-cceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 11 111211111 1222222 45677777764 458888887653
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.42 E-value=20 Score=37.85 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=42.1
Q ss_pred CCCEEEEecCCCcEEEEEcCc-Cc-EE---EEEecCCcceEEEEeeCCCC-eEEEEeCCCcEE------EEcCCCCCCcc
Q 004293 638 RGDYIASGSDDGRWFIWEKQT-GR-LI---KMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIK------IWTPSASVPSI 705 (763)
Q Consensus 638 d~~~l~sgs~Dg~i~iWd~~t-g~-~~---~~l~gH~~~V~~v~~sp~~~-~laS~s~D~~Ir------vW~~~~~~~~~ 705 (763)
.|++++..-..+.|....++. |. .. ..+..-..++..|++.||+. ++++.+..|.|. +|.+.....+.
T Consensus 368 ~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~ 447 (454)
T 1cru_A 368 ENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLI 447 (454)
T ss_dssp TTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEE
T ss_pred CCcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceE
Confidence 455556555566677666663 33 21 22322246899999999997 777766666654 67775554443
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.54 E-value=14 Score=36.74 Aligned_cols=107 Identities=8% Similarity=0.075 Sum_probs=54.2
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeC------CCcEEEEECCCC
Q 004293 61 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRF 127 (763)
Q Consensus 61 ~g~~Lasgs~D-------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~------dg~I~iwd~~~~ 127 (763)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++.. .+ +.+++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET--TEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 57777777754 247888988775433210011000012222 34 567777764 235889998864
Q ss_pred CCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCCC
Q 004293 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS 181 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg-----~i~iwd~~~~~ 181 (763)
... .+..+.... .-.+++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 186 ~W~--------~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 186 DWK--------DLAPMKTPR-SMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEE--------EECCCSSCC-BSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEE--------ECCCCCCCc-ccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 321 121121111 11223332 456777776543 46678877654
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.18 E-value=4.7 Score=40.67 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=63.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeC-CCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCCCc
Q 004293 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS 140 (763)
Q Consensus 63 ~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~ 140 (763)
.+++.++.||.|.-.|..+|+.+.++......++....-... .++..++.. ..||.|..++..++.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~----------~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ----------K 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------E
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------E
Confidence 468889999999999999999999884331233332211100 012333333 5799999998775311 1
Q ss_pred eeee--c--ccCceeE---EEE-ec---CCCCEEEEEeCCCcEEEEECCCCC
Q 004293 141 ALYQ--C--HTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGS 181 (763)
Q Consensus 141 ~~~~--~--h~~~v~~---l~~-sp---~~~~~l~s~s~dg~i~iwd~~~~~ 181 (763)
..+. . ...++.. ... .+ ..+..+++++.+|.+...|+++++
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 1111 0 1111211 000 00 023577899999999999999987
No 327
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=86.84 E-value=27 Score=34.82 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=98.1
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCC----CceEEEEEeeCCCCcEEEEEeC-------CC
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG-------DA 117 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~----~~V~~v~~~p~~~~~~l~s~s~-------dg 117 (763)
...|.--.|-.+ +.|+-... ..|.-|+++.. ...+.+ .-|. ..|..-.-+++ .+.++..+- .|
T Consensus 106 ~e~VvfWkWis~-~~L~lVT~-taVyHWs~~~~s~P~kvF-dR~~~L~~~QIInY~~d~~--~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 106 TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp SSCEEEEEECSS-SEEEEEES-SEEEEEESSTTCCCEEEE-ECCGGGTTCEEEEEEECTT--SCEEEEEEEEEETTEEEE
T ss_pred CCccEEEEecCC-CeEEEEcC-CcEEEEcccCCCCCceee-ecchhcccceEEEEEECCC--CCEEEEEeEeccCCccce
Confidence 356777777643 45555554 48999999753 344444 3332 34555555555 565554332 47
Q ss_pred cEEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe--cCCCCEEEEEeCC---CcEEEEECCCCCCCCCCCCCCcc
Q 004293 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQE 192 (763)
Q Consensus 118 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~ 192 (763)
.+.+|..+. ...+.+.+|...-..+.+. +....+|+.+... +++++-++.....- ...
T Consensus 181 ~mQLYS~er-----------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~------~~~ 243 (365)
T 2xzh_A 181 AMQLYSVDR-----------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQP 243 (365)
T ss_dssp EEEEEETTT-----------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTT------CCC
T ss_pred eEEEEeecc-----------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCC------CCC
Confidence 789999986 3356777876554444332 1112244433332 58888888543100 001
Q ss_pred cceEEEecCCCceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 004293 193 CRNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~ 251 (763)
......+ +...+ .......++..++.. ..++.-+.-|.|.+||+.++..+
T Consensus 244 f~kk~vd--------i~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 244 FPKKAVD--------VFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp CCCEEEE--------ECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEE
T ss_pred cccccce--------eeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCcEE
Confidence 1111111 12222 234455688889864 58999999999999999998654
No 328
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=85.57 E-value=40 Score=40.38 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=85.8
Q ss_pred EEeCCC-CCEEEEEe----------CCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEEC
Q 004293 56 ISWNSK-GSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (763)
Q Consensus 56 l~fsp~-g~~Lasgs----------~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~ 124 (763)
+.|..+ ..+|+.|. ..|.|.++++..++..........++|++++-.. |. |+.|- ..+|++|++
T Consensus 837 v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~---g~-Lla~i-g~~l~vy~l 911 (1158)
T 3ei3_A 837 CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN---GK-LLASI-NSTVRLYEW 911 (1158)
T ss_dssp ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET---TE-EEEEE-TTEEEEEEE
T ss_pred EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC---CE-EEEEc-CCEEEEEEC
Confidence 334433 46888875 3478999998755433322234567888877552 44 44443 478999999
Q ss_pred CCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCc
Q 004293 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (763)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (763)
...+ .+..-..+-..|..+.... .+++++.|..-..|.++-.+... ..+..+.
T Consensus 912 ~~~~----------~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~-------------~~L~~~a--- 964 (1158)
T 3ei3_A 912 TTEK----------ELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPME-------------GNFEEIA--- 964 (1158)
T ss_dssp CTTS----------CEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTT-------------TEEEEEE---
T ss_pred CCCc----------eEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCC-------------CeEEEEE---
Confidence 8522 1221111111233222222 24677788777777765443221 0111100
Q ss_pred eeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCC
Q 004293 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (763)
Q Consensus 205 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~ 247 (763)
......+++++.|-.+ ..++.+..+|.+.++....
T Consensus 965 ------~D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 965 ------RDFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ------ECCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred ------eecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence 1123457888888764 4788899999999987764
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.76 E-value=15 Score=34.32 Aligned_cols=117 Identities=11% Similarity=0.016 Sum_probs=62.0
Q ss_pred CceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCCCCCccceEEEEEeCCC
Q 004293 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (763)
Q Consensus 148 ~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 227 (763)
..+..++|+| ++.+.+. .+|.++-.+..+..... .... ...+-. ..-....++.|.|+
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~------------W~~s----~t~IG~--~Gw~~F~a~~fD~~- 98 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDN------------WMGR----AKKIGN--GGWNQFQFLFFDPN- 98 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCC------------HHHH----CEEEEC--SCGGGCSEEEECTT-
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCccc------------cccc----ccEecc--cccccceEEEECCC-
Confidence 4788999999 6666655 67877777654432110 0000 000000 00112468889997
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCeEE
Q 004293 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 304 (763)
Q Consensus 228 ~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~ 304 (763)
+.+.++ .||.|.-++..+...-. ...- ...+...+-. .+..|.|.|+|.+.++. |+.++
T Consensus 99 G~LYav--~dG~iyr~~pP~~~~~~-----------Wl~~-a~~vg~~gw~--~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 99 GYLYAV--SKDKLYKASPPQSDTDN-----------WIAR-ATEVGSGGWS--GFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp SCEEEE--ETTEEEEESCCCSTTCC-----------HHHH-SEEEECSSGG--GEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCEEEe--CCCEEEEeCCCcCCCCc-----------eecc-ccEeccCCCC--ceEEEEECCCceEEEEe--CCcEE
Confidence 666666 66988877764321110 0000 0001111122 38999999999865555 77754
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.48 E-value=13 Score=37.72 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEEccC-CCCceEEEEEeeCCCCcEEEEEeCC
Q 004293 61 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGD 116 (763)
Q Consensus 61 ~g~~Lasgs~-D---------~~v~iWd~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~s~d 116 (763)
++++++.|+. + ..+.+||+.+.+-...-... ....-.++.. .+ +.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HN--GKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ET--TEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-EC--CEEEEEeCcC
Confidence 5677777765 2 46889999887643321111 1111122222 44 6788888765
No 331
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=84.27 E-value=17 Score=36.80 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=39.4
Q ss_pred CCCCEEEEecCCCcEEEEEcCcCcEEEE--Ee-cCCcceEEEEeeCCCCeEEEEe-CCC
Q 004293 637 QRGDYIASGSDDGRWFIWEKQTGRLIKM--LL-GDEAVVNCVQCHPFDCVVATSG-IDN 691 (763)
Q Consensus 637 ~d~~~l~sgs~Dg~i~iWd~~tg~~~~~--l~-gH~~~V~~v~~sp~~~~laS~s-~D~ 691 (763)
.+|+++++.-..+.|...+++.++.+.. +. +-...+..|++.|++.++++.. .+|
T Consensus 287 ~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g 345 (353)
T 2g8s_A 287 WQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG 345 (353)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE
T ss_pred cCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC
Confidence 3678888888888888888887655433 32 3345799999999999777543 344
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.86 E-value=19 Score=40.46 Aligned_cols=158 Identities=10% Similarity=0.073 Sum_probs=81.5
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCeEEEEE-c-----cCCCCceEEEEEee-CCCCcEEEEEeCCC------cEEEE
Q 004293 60 SKGSLLISGSDD----THINVWSYSSRKLLHSI-E-----TGHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF 122 (763)
Q Consensus 60 p~g~~Lasgs~D----~~v~iWd~~~~~~~~~~-~-----~~h~~~V~~v~~~p-~~~~~~l~s~s~dg------~I~iw 122 (763)
.++.+++.|+.+ ..+.+||..+++....- . ......-.++...+ + +.+++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence 467778888753 46888998877543322 1 01111112333343 4 67888887543 47888
Q ss_pred ECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEEec
Q 004293 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (763)
Q Consensus 123 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 200 (763)
|..+... ..+..+.... .-.+++... ++.+++.||.++ .+.+||+.+.+-. .+
T Consensus 474 d~~t~~W--------~~~~~~p~~R-~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~---------------~~ 528 (695)
T 2zwa_A 474 DMKTREW--------SMIKSLSHTR-FRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFK---------------DV 528 (695)
T ss_dssp ETTTTEE--------EECCCCSBCC-BSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEE---------------EC
T ss_pred eCCCCcE--------EECCCCCCCc-ccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceE---------------Ec
Confidence 8876332 1122222111 112233323 557887887655 6888998775411 00
Q ss_pred CCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeC--C-----CcEEEEeCCCCC
Q 004293 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--D-----AFARLYDRRMLP 249 (763)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~--D-----g~i~iwd~~~~~ 249 (763)
.... ..+.......++.+....+.+++.|+. + ..+.+||+.+..
T Consensus 529 ~~~g-----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 529 TPKD-----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCSS-----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred cCCC-----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 0000 001111122335556543567777775 2 458899988764
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=82.51 E-value=17 Score=36.77 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred eeeccccCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEc---cCCCCceEEEEEeeC--CCCcEEEEEe--
Q 004293 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE---TGHSANVFCTKFVPE--TSDELVVSGA-- 114 (763)
Q Consensus 44 ~~l~gH~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~---~~h~~~V~~v~~~p~--~~~~~l~s~s-- 114 (763)
..+-..-..-+.|+|.|+|.+|++--..|.|++++..+++. +..+. .........|+|+|+ .++.+.++-+
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 33434445678999999999888776589999998766553 22221 123456899999995 1144544432
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCCCc-eeee-cccCceeEEEEecCCCCEEEEEeCCC
Q 004293 115 GDAEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 115 ~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
.++.|.-|.+.............+.+ ..+. ........|+|.| ++.++++.+..+
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~ 161 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESG 161 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCC
Confidence 34455555554321100000000111 1111 1112346789998 456666655443
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=80.87 E-value=57 Score=33.93 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=119.1
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEccCCC----CceEEEEEeeCCCCcEEEEEe-------CCCc
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHS----ANVFCTKFVPETSDELVVSGA-------GDAE 118 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~-~~~~~~~~~h~----~~V~~v~~~p~~~~~~l~s~s-------~dg~ 118 (763)
..|.--.|-. .+.|+.... ..|.-|+++.. ..++.| .-|. ..|..-.-+++ .+.++..+ -.|.
T Consensus 106 e~VvfWkWis-~~~l~lVT~-taVyHWsi~~~s~P~kvF-dR~~~L~~~QIInY~~d~~--~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 106 DDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp SCCCEEEEEE-TTEEEEECS-SEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTT--SSEEEEEEEEEETTEEEEE
T ss_pred CCceEEEecC-CCeEEEEcC-CeeEEecccCCCCchhhe-ecchhcccceEEEEEECCC--CCeEEEEeecccCCcccce
Confidence 4566666653 345665554 48999999753 344444 3332 34555555555 56655433 2477
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEec--CCCCEEEEEeCC---CcEEEEECCCCCCCCCCCCCCccc
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV--GNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQEC 193 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp--~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~ 193 (763)
+.+|.++. ...+.+.+|...-..+.+.- ....+|+.+... +++.|-++.....- ....
T Consensus 181 mQLYS~er-----------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~------~~~f 243 (494)
T 1bpo_A 181 MQLYSVDR-----------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG------NQPF 243 (494)
T ss_dssp EEEEESTT-----------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT------CCCC
T ss_pred EEEeeccc-----------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC------CCCc
Confidence 89999986 33677888876655554421 111345444443 78888888553100 0011
Q ss_pred ceEEEecCCCceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccc
Q 004293 194 RNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (763)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (763)
.....+ +...+ .......++..++.. ..++.-+.-|.|.+||+.++..+..-.
T Consensus 244 ~kk~vd--------v~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nr----------------- 297 (494)
T 1bpo_A 244 PKKAVD--------VFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNR----------------- 297 (494)
T ss_dssp CCEEEE--------CCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEE-----------------
T ss_pred cceeee--------eeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeec-----------------
Confidence 111222 22222 234455688999974 588899999999999999987543210
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 273 ~~~g~~~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
-....|-.-+......-++.....|.|.--.++..
T Consensus 298 ----Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 298 ----ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ----CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ----ccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 11112444444444445566667777777777663
No 335
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.80 E-value=23 Score=29.31 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=81.8
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCch
Q 004293 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (763)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~ 442 (763)
.......++..+..|. +..++..+..++...+.. ...+.+++..+... ++...|+.++..++.++|....
T Consensus 13 a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPEN------AILYSNRAACLTKL---MEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhh---ccHHHHHHHHHHHHHhhhhhhH
Confidence 3444556666666666 789999999999876543 34566777766653 3455778889999999999999
Q ss_pred hHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhh
Q 004293 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (763)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~ 477 (763)
+.+.+...+..+++..++...........|+....
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999998888888887543
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=78.61 E-value=30 Score=34.76 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=26.3
Q ss_pred CcEEEEeCCCCeEEE--EEccCCCCceEEEEEeeCCCCcEEEEEeC------CCcEEEEEC
Q 004293 72 THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNL 124 (763)
Q Consensus 72 ~~v~iWd~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~l~s~s~------dg~I~iwd~ 124 (763)
..+.+||+.+.+-.. .+....... .++... + +.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNK-G--DKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBS-CEEEEE-T--TEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCccc-ccEEEE-C--CEEEEEeeecCCCcccCceEEEEe
Confidence 478899998875332 221111111 233333 3 567777664 345777877
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=78.18 E-value=71 Score=33.53 Aligned_cols=114 Identities=9% Similarity=0.148 Sum_probs=62.9
Q ss_pred cCceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEccC-----CCCceEEEEEeeC---CCCcEEEEEeC----
Q 004293 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETG-----HSANVFCTKFVPE---TSDELVVSGAG---- 115 (763)
Q Consensus 50 ~~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~--~~~~~~~-----h~~~V~~v~~~p~---~~~~~l~s~s~---- 115 (763)
-...+.|+|.|+|+++++-...+.|++++..+++. +..+... ....+..|+|+|+ . +.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccccC
Confidence 34567999999999887755445788888765543 2233111 2456789999994 2 555555542
Q ss_pred --------CCcEEEEECCCCCCCCCCCCCCCCce-eee-cccCceeEEEEecCCCCEEEEEeC
Q 004293 116 --------DAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASE 168 (763)
Q Consensus 116 --------dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~v~~l~~sp~~~~~l~s~s~ 168 (763)
...|.-|++........ ..+.+. .+. ........|+|.| ++.++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 23455555432111100 001111 111 1122468899999 4566666554
No 338
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=76.38 E-value=67 Score=32.30 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=44.1
Q ss_pred CceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCeEEEEE------ccCCCCceEEEEEeeC---CCCcEEEEEeC-----
Q 004293 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSI------ETGHSANVFCTKFVPE---TSDELVVSGAG----- 115 (763)
Q Consensus 51 ~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~~~~~~------~~~h~~~V~~v~~~p~---~~~~~l~s~s~----- 115 (763)
.....|+|.|+|+ ++++ ...+.|++++.. +.....+ ..........|+|+|+ . +.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCC
Confidence 3568999999999 6654 567899999854 3321111 0112345689999994 2 555555433
Q ss_pred --CCcEEEEECC
Q 004293 116 --DAEVRLFNLS 125 (763)
Q Consensus 116 --dg~I~iwd~~ 125 (763)
...|..|++.
T Consensus 95 ~~~~~v~r~~~~ 106 (353)
T 2g8s_A 95 KAGTAVGYGRLS 106 (353)
T ss_dssp CEEEEEEEEEEC
T ss_pred CceeEEEEEEEC
Confidence 2346666664
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=76.28 E-value=91 Score=37.81 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=94.9
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEccCC----CCceEEEEEeeCCCCcEEEEEe-------CCCc
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGH----SANVFCTKFVPETSDELVVSGA-------GDAE 118 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~-~~~~~~~~h----~~~V~~v~~~p~~~~~~l~s~s-------~dg~ 118 (763)
..|.--.|-.+. .|+..+. ..|.-|++.... +++.| .-| ...|..-.-+++ .+.++..| -.|.
T Consensus 106 e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~f-dR~~~L~~~QIinY~~d~~--~kW~~l~gi~~~~~~v~G~ 180 (1630)
T 1xi4_A 106 DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK--QKWLLLTGISAQQNRVVGA 180 (1630)
T ss_pred CCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHH-hcchhcccCeeEEeeeCCC--CCeEEEEeeccCCCcccce
Confidence 457777775433 4554443 479999997432 22222 223 345555555665 45555433 3588
Q ss_pred EEEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEe--cCCCCEEEEEeC---CCcEEEEECCCC-CCCCCCCCCCcc
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASE---DGTLRQHDFRQG-SSCPPAGSSHQE 192 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~s~s~---dg~i~iwd~~~~-~~~~~~~~~~~~ 192 (763)
+.+|.++... .+.+.||...-..+... +....+|+.+.. .+.+.|-++... ...+ .
T Consensus 181 mQLyS~er~~-----------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~-------~ 242 (1630)
T 1xi4_A 181 MQLYSVDRKV-----------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ-------P 242 (1630)
T ss_pred eeeeeccccc-----------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC-------C
Confidence 9999988632 45566776655444442 212234433322 268888888553 1000 0
Q ss_pred cceEEEecCCCceeeccCCC-CCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCc
Q 004293 193 CRNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~ 252 (763)
...... .+...+ .......++..++.. ..+..-+.-|.|.+||+.++..+.
T Consensus 243 f~kk~~--------~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 243 FPKKAV--------DVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred Cccccc--------cccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhh
Confidence 000011 111111 123344578888864 588888999999999999987654
No 340
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=75.40 E-value=71 Score=32.10 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=37.1
Q ss_pred cCceEEEEeCCC---C-CEEEEEeCC-----CcEEEEeCCCCe-----EE-EEEc--cCCCCceEEEEEeeCCCCcEEEE
Q 004293 50 QGCVNAISWNSK---G-SLLISGSDD-----THINVWSYSSRK-----LL-HSIE--TGHSANVFCTKFVPETSDELVVS 112 (763)
Q Consensus 50 ~~~V~~l~fsp~---g-~~Lasgs~D-----~~v~iWd~~~~~-----~~-~~~~--~~h~~~V~~v~~~p~~~~~~l~s 112 (763)
......|+|+|+ + .+.++-... ..|..|+...+. .+ ..+. .+.......++|.|+ |.++++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence 456889999998 4 444444432 578888876431 22 2232 111123468999999 676666
Q ss_pred Ee
Q 004293 113 GA 114 (763)
Q Consensus 113 ~s 114 (763)
.+
T Consensus 152 ~G 153 (352)
T 2ism_A 152 TG 153 (352)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=72.42 E-value=24 Score=37.37 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=61.6
Q ss_pred CceEEEEeCCCCC-EEEEEeCCCcEEEEeCCCCe---EEEEEc----cC----CCCceEEEEEeeC--CCCcEEEEEeCC
Q 004293 51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---LLHSIE----TG----HSANVFCTKFVPE--TSDELVVSGAGD 116 (763)
Q Consensus 51 ~~V~~l~fsp~g~-~Lasgs~D~~v~iWd~~~~~---~~~~~~----~~----h~~~V~~v~~~p~--~~~~~l~s~s~d 116 (763)
..-+.|+|.|+|. .|+.+...|.|++++..... .+..+. .+ .......|+|+|+ .++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 44455678999999754321 222221 11 1356789999995 113454443321
Q ss_pred ------------CcEEEEECCCCCCCCCCCCCCCCceeee--cccCceeEEEEecCCCCEEEEEeCCC
Q 004293 117 ------------AEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDG 170 (763)
Q Consensus 117 ------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~s~s~dg 170 (763)
..|.-|.+........+....+.+..+. ........|+|.| ++.++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCC
Confidence 1344455543211111100111122221 1122357899999 557776666543
No 342
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=72.10 E-value=31 Score=29.73 Aligned_cols=110 Identities=13% Similarity=0.000 Sum_probs=80.7
Q ss_pred hhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccC-----CCC-------CccchhhhhHHHHHhhccccccchhhhHHh
Q 004293 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLS-----GIG-------PMLRHECLCIRAALLLKRKWKNDAQMAIRD 429 (763)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d 429 (763)
....+...+...+..|. +..++..+..++..... ... .+....++.+++..++..+ +...|+.+
T Consensus 10 ~a~~~~~~G~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKD-YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 34556666666666666 77888888888775211 000 1111235667777666533 45577889
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCCh
Q 004293 430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (763)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~ 475 (763)
+..++.++|....+.+.+..++..+++..++...........|...
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999888888888865
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.45 E-value=12 Score=43.99 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.1
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~ 88 (763)
.|.+++..++..+|++-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5777888888899999999999999999999988775
No 344
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=66.75 E-value=10 Score=33.29 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=85.1
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCC-ccc-----hhhhhHHHHHhhccccccchhhhHHhHHHHhcC
Q 004293 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-MLR-----HECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (763)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~ 436 (763)
...++..++..+..|. +..++..|..++...+..... ... ..+|.+++.++.+.+ +...|+..+..++.+
T Consensus 11 a~~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHh
Confidence 3445566666666665 778999999998877662111 111 127888888887654 344677788888888
Q ss_pred -------CCCCchhH----HHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004293 437 -------DSSSFRAH----LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (763)
Q Consensus 437 -------~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 486 (763)
+|....++ +....++..++++.++...........|+.............
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999 889999999999999998888777777765554433333333
No 345
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=66.25 E-value=1.1e+02 Score=30.64 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=36.7
Q ss_pred cCceEEEEeCCC----CCEEEEEeC---C----CcEEEEeCCCC-------eEE-EEEccCCCCceEEEEEeeCCCCcEE
Q 004293 50 QGCVNAISWNSK----GSLLISGSD---D----THINVWSYSSR-------KLL-HSIETGHSANVFCTKFVPETSDELV 110 (763)
Q Consensus 50 ~~~V~~l~fsp~----g~~Lasgs~---D----~~v~iWd~~~~-------~~~-~~~~~~h~~~V~~v~~~p~~~~~~l 110 (763)
......|+|+|+ +.+.++-+. + ..|..|+.... +.+ ..+..........++|.|+ |.++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Ly 149 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLY 149 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEE
Confidence 356889999997 444454432 3 56777776654 111 1231111123467999999 6777
Q ss_pred EEEe
Q 004293 111 VSGA 114 (763)
Q Consensus 111 ~s~s 114 (763)
++.+
T Consensus 150 vt~G 153 (354)
T 3a9g_A 150 ITTG 153 (354)
T ss_dssp EECC
T ss_pred EEEC
Confidence 7644
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=62.90 E-value=1.2e+02 Score=29.71 Aligned_cols=104 Identities=8% Similarity=0.049 Sum_probs=56.9
Q ss_pred EEeCCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEe--CCCcE
Q 004293 56 ISWNSKGSLLISGSDD--------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 119 (763)
Q Consensus 56 l~fsp~g~~Lasgs~D--------------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s--~dg~I 119 (763)
--|+++|.+|.-+... ..|+..++..++..... . .. +..|+++ +..|+-.. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~---~~--~~~~s~~--g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-P---DP--CIYASLI--GNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-C---SC--EEEEEEE--TTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-c---CC--ccEEEEe--CCEEEEEeecCCCCc
Confidence 3457889888766542 46777787766533322 1 11 2367887 57777665 34444
Q ss_pred EEEECCCCCCCCCCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 004293 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (763)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~ 180 (763)
.||.+... +. ....+..+.. .+++|.+..++++......|.+-++...
T Consensus 130 ~Iy~~~~d-Gs--------~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 130 SLYRIRID-GE--------EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEEETT-SC--------CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred eEEEEECC-CC--------CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence 55544431 11 1233333322 3456656555555444677888777654
No 347
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.56 E-value=82 Score=25.25 Aligned_cols=97 Identities=23% Similarity=0.153 Sum_probs=71.9
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhH
Q 004293 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~ 444 (763)
.+...+...+..+. +..++..+..++...+.. ...+.+++..+... ++...|......++.++|....+.
T Consensus 6 ~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 6 EARLEGKEYFTKSD-WPNAVKAYTEMIKRAPED------ARGYSNRAAALAKL---MSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34445555555555 778899999988876543 34566666666653 345567888889999999999999
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHhccC
Q 004293 445 LYMSEALEQLCKYKEALDFAIAAQCLD 471 (763)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (763)
+.+...+..+++..++...........
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999988877776666
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=53.92 E-value=1.9e+02 Score=29.25 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=17.0
Q ss_pred ceEEEEEeCCCCcEEEEEeCCC
Q 004293 217 SLKSCDISSTRPHLLLVGGSDA 238 (763)
Q Consensus 217 ~v~~i~~~p~~~~~l~sgs~Dg 238 (763)
.+.+++++|.++..|.++...+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE
T ss_pred ceeEEEECCCCCCEEEEEcCCe
Confidence 4788999997667788877655
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=51.86 E-value=57 Score=36.59 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=60.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC--cEEEEECCCCCCCCC
Q 004293 61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGL 132 (763)
Q Consensus 61 ~g~~Lasgs~D------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg--~I~iwd~~~~~~~~~ 132 (763)
++++++.|+.+ ..+.+||..+.+-...-.......-.++....+ +.+++.|+.++ .+.+||+.+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 67788887754 357889988865332210011111122223234 68888888655 689999886432211
Q ss_pred CCCCCCCceeeecccCceeEEEEecCCCCEEEEEeC--C-----CcEEEEECCCCC
Q 004293 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--D-----GTLRQHDFRQGS 181 (763)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~--d-----g~i~iwd~~~~~ 181 (763)
.+...+.........+.+....+.+++.||. + ..+.+||+.+.+
T Consensus 529 -----~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 529 -----TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp -----CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred -----cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 0000011112222335555533567777776 2 358888988765
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.70 E-value=54 Score=38.31 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=28.5
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004293 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (763)
Q Consensus 281 ~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~~ 312 (763)
.+.+++..++..++++-+.|+++++|++.++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 47778888899999999999999999999865
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.14 E-value=41 Score=36.68 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=40.7
Q ss_pred ccCCCCEEEEecCC------------CcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCCeEEEE
Q 004293 635 LGQRGDYIASGSDD------------GRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATS 687 (763)
Q Consensus 635 ~s~d~~~l~sgs~D------------g~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~~laS~ 687 (763)
|+++|++++.-..+ ..+.+.+..+|++.+.+.++ ...++.++|+||++.|+..
T Consensus 483 fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 78999876654332 23556677889999999998 5699999999999866554
No 352
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.92 E-value=31 Score=38.32 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=29.8
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~ 88 (763)
..|.++.+ +..+|++-+.|+++|+|++.+++++.+.
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 34666555 4779999999999999999999988776
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.20 E-value=14 Score=40.93 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=27.9
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcCcEEEEEec
Q 004293 636 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG 667 (763)
Q Consensus 636 s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l~g 667 (763)
..+..||++-+.|+++||||+.+++++.+..-
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34688999999999999999999999887643
No 354
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=47.70 E-value=1.3e+02 Score=25.60 Aligned_cols=109 Identities=9% Similarity=-0.097 Sum_probs=81.1
Q ss_pred ccCchhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcC
Q 004293 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (763)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~ 436 (763)
...+.....+...+......|+ +..++..+..++...+.. ...+.+.+..+... ++...|+.....++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~---g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIK---EQFQQAADLYAVAFAL 99 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH---ccHHHHHHHHHHHHhh
Confidence 3344455566666666666666 778999999988876543 33455555555443 3445667778889999
Q ss_pred CCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCCh
Q 004293 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (763)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~ 475 (763)
+|.+..+++.+..++..+++..++...........|+..
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999988888888754
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.34 E-value=18 Score=43.47 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=27.7
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEEEE
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIKML 665 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~~l 665 (763)
..++..||++-+.|+++|||++.+|+++.+.
T Consensus 245 ~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 245 FLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp EETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 5678899999999999999999999988764
No 356
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=43.87 E-value=1.4e+02 Score=31.21 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=77.6
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCC---------CccchhhhhHHHHHhhccccccchhhhHHhHHHHhc
Q 004293 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~ 435 (763)
.+...+...+..+. +..|+..+..++...+.... ......++.+++..+... ++...|+..+..++.
T Consensus 270 ~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 270 IVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL---REYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHh
Confidence 34445555555555 78899999999886654321 001123566677666653 345678889999999
Q ss_pred CCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhH
Q 004293 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (763)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~ 478 (763)
++|....+.+.+..++..++++.++...........|......
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999988888888765543
No 357
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=43.82 E-value=95 Score=31.05 Aligned_cols=69 Identities=12% Similarity=-0.065 Sum_probs=40.5
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcCcEEE-E--EecCCcceE-----------EEEeeC----------CCCeEEEEeCC
Q 004293 635 LGQRGDYIASGSDDGRWFIWEKQTGRLIK-M--LLGDEAVVN-----------CVQCHP----------FDCVVATSGID 690 (763)
Q Consensus 635 ~s~d~~~l~sgs~Dg~i~iWd~~tg~~~~-~--l~gH~~~V~-----------~v~~sp----------~~~~laS~s~D 690 (763)
++.|+.+++ ++.||.|+-.|..+|+.+- . |.+..-.+. -+.-+| ++.+++-...|
T Consensus 209 ~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W~~~~l~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~ 287 (339)
T 2be1_A 209 FSKDGMCIA-PFRDKSLLASDLDFRIARWVSPTFPGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSN 287 (339)
T ss_dssp SCSSSCCEE-EETTTEEEEECSTTCCEEEECCCCSSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTT
T ss_pred cccCCcEEE-ECCCCEEEEEECCCCcEEEEeecCCCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCC
Confidence 345677744 6778888888888877654 1 211110111 133344 45566656779
Q ss_pred CcEEEEcCCCCCCc
Q 004293 691 NTIKIWTPSASVPS 704 (763)
Q Consensus 691 ~~IrvW~~~~~~~~ 704 (763)
|.+..+..+..+.+
T Consensus 288 G~~~Als~~~yp~~ 301 (339)
T 2be1_A 288 LSWFALSSQNFPSL 301 (339)
T ss_dssp CCEEEEETTTCHHH
T ss_pred CcEEEecCCCCcee
Confidence 99999988666544
No 358
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.17 E-value=4.1e+02 Score=30.02 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=59.9
Q ss_pred cCceEEEEeCCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEccC------CCCceEEEEEeeCCCCcEEEEEeCCCc----
Q 004293 50 QGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETSDELVVSGAGDAE---- 118 (763)
Q Consensus 50 ~~~V~~l~fsp~-g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~l~s~s~dg~---- 118 (763)
.+.|.+|+++|. ...+..+...+.|...+ ..|+.-..+... ....|.+|++.|.. ...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~-~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNN-PDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTE-EEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCC-CCEEEEEeCccCCCcc
Confidence 468999999995 35566667667766555 334433333221 12469999999852 334444433211
Q ss_pred EEEEECCCCCCCCCCCCCCCCcee-ee--c---ccCceeEEEEecCCCCEEEEEeCCCcE
Q 004293 119 VRLFNLSRFSGRGLDDNAITPSAL-YQ--C---HTRRVKKLAVEVGNPHVVWSASEDGTL 172 (763)
Q Consensus 119 I~iwd~~~~~~~~~~~~~~~~~~~-~~--~---h~~~v~~l~~sp~~~~~l~s~s~dg~i 172 (763)
-.||.-... +.. ++.+.. +. + ....+..|+++|.++..++.+...+.|
T Consensus 92 ~~v~~S~Dg-G~T-----W~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl 145 (789)
T 1sqj_A 92 AAFYVSEDR-GQS-----FTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI 145 (789)
T ss_dssp CEEEEESST-TSE-----EEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE
T ss_pred cEEEEECCC-CCc-----ceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE
Confidence 344443321 111 111110 00 0 011356788888766777777644443
No 359
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=39.10 E-value=1.8e+02 Score=24.62 Aligned_cols=119 Identities=18% Similarity=0.102 Sum_probs=85.3
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCch
Q 004293 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (763)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~ 442 (763)
...+...+......+. +..++..+..++...+.. ..++.+.+..+... ++...|+.....++.++|....
T Consensus 11 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPAN------PIYLSNRAAAYSAS---GQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHH
Confidence 4445555555555555 778999999998876543 33555666655543 3455677888899999999999
Q ss_pred hHHHHHHHHHHhCchHHHHHHHHHHhccCCCChh--hHHHHHHHHHHHHHH
Q 004293 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV--MAEKVENIKKHIAAA 491 (763)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~ 491 (763)
+.+.+...+..+++..++...........|.... +..+.......+...
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888887765 444455555555444
No 360
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=37.48 E-value=3e+02 Score=26.75 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=17.6
Q ss_pred EEcCCCCEEEEEeCC--CeEEEEECCCCC
Q 004293 286 TFSPNGEEVLLSYSG--EHVYLMDVNHAG 312 (763)
Q Consensus 286 ~~spdg~~l~~~s~d--~~i~iwd~~~~~ 312 (763)
.++|++.+|+-...+ ..|..-++....
T Consensus 190 ~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred eeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 356999988876653 366666666543
No 361
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.61 E-value=91 Score=33.64 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=38.9
Q ss_pred ccCCCCEEEEecC------------CCcEEEEEcCcCcEEEEEecC-CcceEEEEeeCCCCeEEEE
Q 004293 635 LGQRGDYIASGSD------------DGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATS 687 (763)
Q Consensus 635 ~s~d~~~l~sgs~------------Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~~sp~~~~laS~ 687 (763)
|.++|.+.+.... ...++.++..+|++.+.+.+. ...++.++|+||++.|..+
T Consensus 483 fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 6788876663211 226778888899998888876 4579999999999866554
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.43 E-value=26 Score=42.07 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 88 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~ 88 (763)
.|.+++..++..+|++-+.|+++|||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556677788899999999999999999999998875
No 363
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=35.26 E-value=1.8e+02 Score=29.27 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=79.4
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCC----------CCccchhhhhHHHHHhhccccccchhhhHHhHHHHh
Q 004293 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI----------GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR 434 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~ 434 (763)
.+...+...+..+. +..|+..+..++....... ..+....++.+.+..+... ++...|+..+..++
T Consensus 225 ~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---g~~~~A~~~~~~al 300 (370)
T 1ihg_A 225 DLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM---SDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHH
Confidence 34455555555555 7788888888876321100 0011123455666665543 34556788899999
Q ss_pred cCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004293 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (763)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 484 (763)
.++|....+.+.+..++..+++..++...........|............
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998888999876554443333
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=30.91 E-value=4.8e+02 Score=27.18 Aligned_cols=30 Identities=3% Similarity=-0.026 Sum_probs=22.3
Q ss_pred CceEEEEEeeCCCCc-EEEEEeCCCcEEEEECC
Q 004293 94 ANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 94 ~~V~~v~~~p~~~~~-~l~s~s~dg~I~iwd~~ 125 (763)
.....|+|.|+ +. .|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pd--G~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGD--GSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSS--SSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCC--CCeEEEEEeCCceEEEEeCC
Confidence 45689999999 54 34455678999999754
No 365
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=30.68 E-value=1.1e+02 Score=33.01 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=51.9
Q ss_pred ceEEEEeCCCCCEEEEEe-CCCcEEEEeCCCC------e-------EEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCC
Q 004293 52 CVNAISWNSKGSLLISGS-DDTHINVWSYSSR------K-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs-~D~~v~iWd~~~~------~-------~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg 117 (763)
....+.++|||++++.++ .+.+|.|+|++.. + ..... .-.-.....+|.++ |....|.-.|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~--G~aYTtlfidS 399 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGR--GNAYTTLFIDS 399 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSS--SEEEEEETTTT
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCC--CceEeeeeecc
Confidence 345788999999887655 5889999998741 1 12222 22345688999998 76677777899
Q ss_pred cEEEEECCC
Q 004293 118 EVRLFNLSR 126 (763)
Q Consensus 118 ~I~iwd~~~ 126 (763)
.|.-|++..
T Consensus 400 qvvkWni~~ 408 (638)
T 3sbq_A 400 QVVKWNMEE 408 (638)
T ss_dssp EEEEEEHHH
T ss_pred eEEEEeccH
Confidence 999999974
No 366
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=29.18 E-value=2.9e+02 Score=24.12 Aligned_cols=119 Identities=18% Similarity=0.078 Sum_probs=82.1
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccc----------hhhhhHHHHHhhccccccchhhhHHhHHHHh
Q 004293 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR----------HECLCIRAALLLKRKWKNDAQMAIRDCYNAR 434 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~ 434 (763)
.+...+...+..+. +..++..+..++...+........ ..++.+.+..+... ++...|+..+..++
T Consensus 40 ~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al 115 (198)
T 2fbn_A 40 DIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN---KDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Confidence 34445555555555 778999999998866554322111 13455555555443 34556778888899
Q ss_pred cCCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 004293 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKH 487 (763)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 487 (763)
.++|....+.+.+...+..+++..++...........|...............
T Consensus 116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888876554444433333
No 367
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=28.48 E-value=2.6e+02 Score=23.30 Aligned_cols=108 Identities=16% Similarity=-0.005 Sum_probs=77.3
Q ss_pred chhhhHHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCC
Q 004293 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (763)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~ 439 (763)
......+...+......|. +..++..+..++...+.. ...+...+..+... ++...|+.....++.++|.
T Consensus 18 p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYD------SRFFLGLGACRQAM---GQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTT
T ss_pred HhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcCCC
Confidence 3344455556666566665 778888888888765543 23444555544432 3445667778888999999
Q ss_pred CchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhh
Q 004293 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (763)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~ 477 (763)
+..+.+.+..++..+++..++...........|+....
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999998888888877765544
No 368
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=26.73 E-value=6.9e+02 Score=27.71 Aligned_cols=203 Identities=10% Similarity=0.059 Sum_probs=106.6
Q ss_pred CceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-cC----CCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECC
Q 004293 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TG----HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~-~~----h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~ 125 (763)
..|.++.-.++|.+.+ |.. +-|..+|..+++...-.. .. ....|.++...++ + .|-.|+..+-|.++|..
T Consensus 373 ~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~--g-~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 373 NRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTA--G-QLWISTCLGGIFVVDKH 447 (758)
T ss_dssp SCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTT--S-EEEEEESSSCEEEEEHH
T ss_pred CceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCC--C-CEEEEECCCceEEEccc
Confidence 3588888888887655 444 568999998876543210 11 1245777776655 4 45556666678888865
Q ss_pred CC---CCCCCCCCCCCCceeee---c-ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEE
Q 004293 126 RF---SGRGLDDNAITPSALYQ---C-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (763)
Q Consensus 126 ~~---~~~~~~~~~~~~~~~~~---~-h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 198 (763)
.. .... ......+. + ....|.+|...+ ++.+.+.++..+-|..+|..+.+.. .+
T Consensus 448 ~~~~~~~~~-----~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~-------------~~ 508 (758)
T 3ott_A 448 KLMQSTSGQ-----YIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVT-------------KL 508 (758)
T ss_dssp HHHHCCSSE-----EECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEE-------------EE
T ss_pred cccccCCcc-----eecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceE-------------Ee
Confidence 20 0000 00000111 1 123588888776 4455443344456888897665311 00
Q ss_pred ecCCCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCC
Q 004293 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (763)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 278 (763)
... .......+.++....+ +. |-.|+..| +..||..+.+... +. . .+..
T Consensus 509 --~~~-------~~~~~~~~~~i~~d~~-g~-lWigt~~G-l~~~~~~~~~~~~-~~-------------~-----~gl~ 557 (758)
T 3ott_A 509 --FAD-------ELTGEKSPNYLLCDED-GL-LWVGFHGG-VMRINPKDESQQS-IS-------------F-----GSFS 557 (758)
T ss_dssp --CTT-------TSCGGGCEEEEEECTT-SC-EEEEETTE-EEEECC--CCCCB-CC-------------C-----CC--
T ss_pred --cCC-------CcCCCcccceEEECCC-CC-EEEEecCc-eEEEecCCCceEE-ec-------------c-----cCCC
Confidence 000 0011245677877775 44 44455554 7788876543211 10 0 1111
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004293 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 279 ~~~i~~v~~spdg~~l~~~s~d~~i~iwd~~~~ 311 (763)
...|.++... +|. |..++..| |..||..+.
T Consensus 558 ~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 558 NNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTM 587 (758)
T ss_dssp -CCEEEEEEE-TTE-EEEEESSC-EEEEETTTC
T ss_pred ccceEEEEEC-CCC-EEEECCCC-eEEEcCCCc
Confidence 2247888764 554 66666655 677787764
No 369
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=26.05 E-value=1.6e+02 Score=31.73 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=55.1
Q ss_pred ceEEeeecccccceeeeeeccCCCCEEEEec-CCCcEEEEEcCc------CcE-------EEEEecCCcceEEEEeeCCC
Q 004293 616 KQRYVGHCNVGTDIKQASFLGQRGDYIASGS-DDGRWFIWEKQT------GRL-------IKMLLGDEAVVNCVQCHPFD 681 (763)
Q Consensus 616 ~~~~~gh~~~~~~i~~~~~~s~d~~~l~sgs-~Dg~i~iWd~~t------g~~-------~~~l~gH~~~V~~v~~sp~~ 681 (763)
...|..-.+..-.+. .+|||+|++.++ -+.++-|+|++. +++ +...+- .-.-...+|.++|
T Consensus 315 ~~~~iP~pksPHGv~----vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 315 FTRYVPVPKNPHGCN----TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRG 389 (638)
T ss_dssp SEEEEEESSSCCCEE----ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSS
T ss_pred eEEEEeCCCCCccee----eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCC
Confidence 344554444443355 899999986654 578999999884 222 333332 2346688999999
Q ss_pred CeEEEEeCCCcEEEEcCCC
Q 004293 682 CVVATSGIDNTIKIWTPSA 700 (763)
Q Consensus 682 ~~laS~s~D~~IrvW~~~~ 700 (763)
....|--.|..|--|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 7667777999999999864
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=24.52 E-value=59 Score=36.47 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=46.7
Q ss_pred eeeeeeccCCCCEEEEe-----cCCCcEEEEEcCcCcEEE-EEecCCc--------ceEEEEeeCCCCeEEEE-------
Q 004293 629 IKQASFLGQRGDYIASG-----SDDGRWFIWEKQTGRLIK-MLLGDEA--------VVNCVQCHPFDCVVATS------- 687 (763)
Q Consensus 629 i~~~~~~s~d~~~l~sg-----s~Dg~i~iWd~~tg~~~~-~l~gH~~--------~V~~v~~sp~~~~laS~------- 687 (763)
++.+.+++||+++++-+ |+-..|+++|+.|++.+. .|. ... ....++|-+++.++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 55555689999987654 344689999999999873 122 100 01345887666666653
Q ss_pred ---eCCCcEEEEcCCCC
Q 004293 688 ---GIDNTIKIWTPSAS 701 (763)
Q Consensus 688 ---s~D~~IrvW~~~~~ 701 (763)
+.-..|+.|.+-+.
T Consensus 210 ~~~~~~~~v~~~~~Gt~ 226 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGES 226 (711)
T ss_dssp CTTSSBCEEEEEETTSC
T ss_pred CcCCCCCEEEEEECCCC
Confidence 22357999988765
No 371
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=24.19 E-value=7.6e+02 Score=27.34 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=98.6
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc----cCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCC
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~ 127 (763)
.|.++.. .+|. |..|+.+ -|..+|..+++.. .+. ......|.++....+ +.+.+ |..+ -|..++....
T Consensus 104 ~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWi-gt~~-Gl~~~~~~~~ 175 (758)
T 3ott_A 104 DVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKD--NQIYV-GTYN-GLCRYIPSNG 175 (758)
T ss_dssp CEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTT--CCEEE-EETT-EEEEEETTTT
T ss_pred eEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCC--CCEEE-EeCC-CHhhCccCCC
Confidence 4776654 3554 4455555 5778888766543 221 012345777777666 56555 4444 4777887642
Q ss_pred CCCCCCCCCCCCceeee--c----ccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecC
Q 004293 128 SGRGLDDNAITPSALYQ--C----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (763)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~----h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (763)
. ...+. . ....|.+|...+ .+..|..|+. +-+..+|..+.+.. .+..
T Consensus 176 ~-----------~~~~~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~------------~~~~-- 228 (758)
T 3ott_A 176 K-----------FEGIPLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIK------------QTEA-- 228 (758)
T ss_dssp E-----------EEEECCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEE------------EEEE--
T ss_pred c-----------eEEecCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEE------------eccC--
Confidence 1 11110 0 123478887766 3344444554 45888887654310 0000
Q ss_pred CCceeeccCCCCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccc
Q 004293 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (763)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (763)
+ ....|.++...++ + .|.+|+.+ -+.+++..+.+.. .+... .....+.....
T Consensus 229 ------l-----~~~~i~~i~~d~~-g-~lWigT~~-Gl~~~~~~~~~~~-~~~~~-------------~~~~~~l~~~~ 280 (758)
T 3ott_A 229 ------F-----HNNSIKSLALDGN-G-DLLAGTDN-GLYVYHNDTTPLQ-HIIHD-------------SRNIQSLTNNI 280 (758)
T ss_dssp ------E-----EEEEEEEEEECTT-C-CEEEEETT-EEEEECCTTSCCE-EECCC-------------TTCTTSCSCSC
T ss_pred ------C-----CCCeEEEEEEcCC-C-CEEEEeCC-ceeEEecCCCcEE-EEEcC-------------CCCcCcCCcCe
Confidence 0 1235778887775 4 44455544 5778887654321 11000 00001112224
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEE
Q 004293 282 LTHVTFSPNGEEVLLSYSGEHVYLM 306 (763)
Q Consensus 282 i~~v~~spdg~~l~~~s~d~~i~iw 306 (763)
|.++....+|. |-.|+..| +.++
T Consensus 281 i~~i~~D~~g~-lWiGT~~G-l~~~ 303 (758)
T 3ott_A 281 IWNIFADQEHN-IWLGTDYG-ISLS 303 (758)
T ss_dssp EEEEEECTTCC-EEEEESSS-EEEE
T ss_pred EEEEEEcCCCC-EEEEeCCc-cccc
Confidence 89998888887 45555556 4444
No 372
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=24.13 E-value=3.2e+02 Score=25.89 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=72.1
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhH
Q 004293 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~ 444 (763)
.+...+......|. +..|+..+..++...+.. ..++.+++..+... ++...|......++.++|....++
T Consensus 6 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKM---QQPEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34445555555555 778899999988875542 34566667666643 345567888899999999999999
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHhccCCC
Q 004293 445 LYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (763)
Q Consensus 445 ~~~~~~~~~l~~~~~~~~~~~~~~~~~p~ 473 (763)
..+...+..+++..++...........|+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999988777666655553
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=23.32 E-value=2.5e+02 Score=30.31 Aligned_cols=60 Identities=13% Similarity=0.288 Sum_probs=40.5
Q ss_pred CceEEEEeCCCCCEEEEEeC------------CCcEEEEeCCCCeEEEEEccC-CCCceEEEEEeeCCCCcEEEEE
Q 004293 51 GCVNAISWNSKGSLLISGSD------------DTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 51 ~~V~~l~fsp~g~~Lasgs~------------D~~v~iWd~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
.....|.|.++|.+.+.-.. ...|..++..+++....+ .+ ....++.++|+|+ ++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl-~~P~~aEpnGiafSPD--~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM-VGPIGCEVTGISFSPD--QKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE-ECCTTCEEEEEEECTT--SSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE-eCCCCccccCCEECCC--CCEEEEE
Confidence 45678999999998773221 125667777777755444 33 3467899999999 5666554
No 374
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=23.16 E-value=2.8e+02 Score=21.97 Aligned_cols=98 Identities=15% Similarity=0.036 Sum_probs=61.7
Q ss_pred HHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccchhhhhHHHHHhhccccccchhhhHHhHHHHhcCCCCCchhHHH
Q 004293 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (763)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~~~~~~~~~~~~ 446 (763)
...+...+..|. +..++..+..++...+.. ...+...+..+... ++...|......++.++|....+...
T Consensus 21 ~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 21 MEEGLSMLKLAN-LAEAALAFEAVCQKEPER------EEAWRSLGLTQAEN---EKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344444444444 667888888888765543 22334444444332 34455666677888889988888888
Q ss_pred HHHHHHHhCchHHHHHHHHHHhccCCCC
Q 004293 447 MSEALEQLCKYKEALDFAIAAQCLDPSN 474 (763)
Q Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~p~~ 474 (763)
+...+...++..++...........|..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 8888888888888887777666666653
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=23.11 E-value=2.1e+02 Score=31.01 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=37.6
Q ss_pred eEEEEeCCCCCEEEEEeCC------------CcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEE
Q 004293 53 VNAISWNSKGSLLISGSDD------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (763)
Q Consensus 53 V~~l~fsp~g~~Lasgs~D------------~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~ 113 (763)
.=-|+|+|.|.+++.-..+ ..+.+.+..+++..+-+.......++.++|+|+ ++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD--g~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD--QKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT--SSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC--CCEEEEE
Confidence 3458999999966643221 235555666776554442334578999999999 5555543
No 376
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=21.54 E-value=5.3e+02 Score=24.52 Aligned_cols=184 Identities=12% Similarity=0.032 Sum_probs=88.9
Q ss_pred ceEEEEeCCCCCEEEEEeCCCcEEEEeCCCCeEEEEEccCCCCceEEEEEeeCCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004293 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (763)
Q Consensus 52 ~V~~l~fsp~g~~Lasgs~D~~v~iWd~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~l~s~s~dg~I~iwd~~~~~~~~ 131 (763)
.|..++.... ..++. . ||.|..|-......+. +...-...|..++.-.. ..+.-. ||.|..|-.... ++.
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~-gql 133 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSD-GQT 133 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT----EEEEEE-TTEEEEEECCTT-STT
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC----EEEEEe-CCeEEEecCCCC-CcC
Confidence 4555554322 22333 3 6777777654321111 10111235666665544 233333 788888876642 111
Q ss_pred CCCCCCCCceeeecccCceeEEEEecCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEEecCCCceeeccCC
Q 004293 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (763)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (763)
.........|..|+.-. ...+.-. ||.|+.|-......+.. .
T Consensus 134 ---------g~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~-------------------------p 175 (282)
T 3qhy_B 134 ---------TVPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTV-------------------------P 175 (282)
T ss_dssp ---------SCCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSC-------------------------C
T ss_pred ---------CCCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCC-------------------------c
Confidence 00111223466665532 2222333 68888886554332200 0
Q ss_pred CCCccceEEEEEeCCCCcEEEEEeCCCcEEEEeCCCCCCCcccCCCCCCCCcccccccccccCCCCCccceeEEEEcCCC
Q 004293 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (763)
Q Consensus 212 ~~~~~~v~~i~~~p~~~~~l~sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~v~~spdg 291 (763)
......|..++-... ..++. .||.|..|-......+.. |... . ..|..|+.....
T Consensus 176 ~~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~---------------p~~~----~--~~v~~i~~G~~h 230 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTV---------------PTEA----L--SGVSAIASGEWY 230 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCC---------------CGGG----G--SSCCEEEECSSC
T ss_pred eecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCC---------------Cccc----C--CCceEEEcCCCE
Confidence 001234666666553 34554 599999998764322210 0000 1 137777765543
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 004293 292 EEVLLSYSGEHVYLMDVNHA 311 (763)
Q Consensus 292 ~~l~~~s~d~~i~iwd~~~~ 311 (763)
. ++.. |+.|+.|-.+..
T Consensus 231 ~-~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 231 S-LALK--NGKVIAWGSSRT 247 (282)
T ss_dssp E-EEEE--TTEEEEESTTCC
T ss_pred E-EEEE--CCEEEEecCCCC
Confidence 3 3333 999999976653
No 377
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=20.00 E-value=6.1e+02 Score=24.63 Aligned_cols=109 Identities=17% Similarity=0.046 Sum_probs=79.2
Q ss_pred HHHHHHHhhhhcCCChhhHHHHhHHHHhcccCCCCCccc---------hhhhhHHHHHhhccccccchhhhHHhHHHHhc
Q 004293 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR---------HECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (763)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~w~~~~~~a~~d~~~~~~ 435 (763)
.+...+...+..+. +..|+..+..++...+........ ..++.+.+..+... ++...|+..+..++.
T Consensus 149 ~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 149 IVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL---QAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence 34445555555555 778999999998876654211110 23555666655543 345577888999999
Q ss_pred CCCCCchhHHHHHHHHHHhCchHHHHHHHHHHhccCCCChhh
Q 004293 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (763)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~ 477 (763)
++|....+.+.+..++..+++..++...........|.....
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999999999998888888877554
Done!