Query 004294
Match_columns 763
No_of_seqs 423 out of 1817
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 20:56:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.3E-90 4.9E-95 708.0 22.6 225 276-500 1-229 (229)
2 PF01852 START: START domain; 99.7 3.2E-17 6.9E-22 164.8 14.7 200 281-500 1-205 (206)
3 smart00234 START in StAR and p 99.7 6.6E-16 1.4E-20 155.6 18.5 197 282-501 2-206 (206)
4 KOG0483 Transcription factor H 99.7 6.2E-17 1.3E-21 163.7 6.6 82 92-173 52-133 (198)
5 KOG0842 Transcription factor t 99.6 3.4E-16 7.5E-21 166.7 10.3 68 86-153 149-216 (307)
6 KOG0488 Transcription factor B 99.6 3.3E-16 7.1E-21 168.8 4.3 65 87-151 169-233 (309)
7 KOG0487 Transcription factor A 99.6 3E-15 6.5E-20 159.7 8.8 66 88-153 233-298 (308)
8 KOG0843 Transcription factor E 99.6 1.6E-15 3.5E-20 148.8 4.4 64 89-152 101-164 (197)
9 KOG0494 Transcription factor C 99.6 2.3E-15 5.1E-20 154.2 5.6 76 87-162 138-213 (332)
10 KOG0484 Transcription factor P 99.6 1.1E-15 2.4E-20 137.7 2.5 65 86-150 13-77 (125)
11 KOG0485 Transcription factor N 99.6 3.1E-15 6.7E-20 150.2 5.5 61 89-149 103-163 (268)
12 KOG0850 Transcription factor D 99.5 4.5E-15 9.7E-20 150.7 6.4 65 86-150 118-182 (245)
13 KOG0489 Transcription factor z 99.5 1.2E-15 2.6E-20 161.3 2.0 63 89-151 158-220 (261)
14 KOG0848 Transcription factor C 99.5 3.2E-14 6.9E-19 146.8 7.8 68 86-153 195-262 (317)
15 KOG0492 Transcription factor M 99.5 2.8E-14 6E-19 142.7 5.9 65 86-150 140-204 (246)
16 PF00046 Homeobox: Homeobox do 99.4 5.3E-14 1.1E-18 114.8 3.5 57 91-147 1-57 (57)
17 KOG2251 Homeobox transcription 99.4 7.1E-14 1.5E-18 141.5 4.9 66 87-152 34-99 (228)
18 KOG0493 Transcription factor E 99.4 3.5E-13 7.7E-18 138.4 5.1 59 91-149 247-305 (342)
19 KOG0844 Transcription factor E 99.3 1.2E-12 2.7E-17 136.9 3.5 60 90-149 181-240 (408)
20 KOG0486 Transcription factor P 99.3 2.4E-12 5.2E-17 135.8 5.5 61 88-148 110-170 (351)
21 cd00177 START Lipid-binding ST 99.3 1.1E-10 2.4E-15 114.7 15.9 183 285-497 2-190 (193)
22 smart00389 HOX Homeodomain. DN 99.3 2.6E-12 5.6E-17 103.9 3.5 55 92-146 2-56 (56)
23 KOG0491 Transcription factor B 99.3 5.9E-13 1.3E-17 129.1 -0.4 65 89-153 99-163 (194)
24 TIGR01565 homeo_ZF_HD homeobox 99.3 5.7E-12 1.2E-16 104.2 5.5 53 90-142 1-57 (58)
25 cd00086 homeodomain Homeodomai 99.3 3.7E-12 8.1E-17 103.7 3.8 57 92-148 2-58 (59)
26 COG5576 Homeodomain-containing 99.2 7.3E-12 1.6E-16 123.0 4.1 64 90-153 51-114 (156)
27 KOG0847 Transcription factor, 99.2 6.9E-12 1.5E-16 126.3 2.0 65 86-150 163-227 (288)
28 KOG3802 Transcription factor O 99.1 3.6E-11 7.7E-16 131.2 5.0 60 89-148 293-352 (398)
29 cd08871 START_STARD10-like Lip 99.1 7.4E-09 1.6E-13 106.8 19.1 197 284-511 9-212 (222)
30 KOG4577 Transcription factor L 99.1 1.3E-10 2.8E-15 121.2 5.9 64 90-153 167-230 (383)
31 cd08867 START_STARD4_5_6-like 99.0 1.6E-08 3.5E-13 103.2 17.4 192 279-499 3-205 (206)
32 cd08868 START_STARD1_3_like Ch 99.0 1.2E-08 2.5E-13 104.4 15.6 193 279-502 6-208 (208)
33 KOG0490 Transcription factor, 98.9 8.9E-10 1.9E-14 113.1 3.9 64 87-150 57-120 (235)
34 cd08903 START_STARD5-like Lipi 98.8 2.2E-07 4.7E-12 95.5 17.1 191 279-500 3-206 (208)
35 cd08904 START_STARD6-like Lipi 98.8 1.5E-07 3.2E-12 96.7 15.6 169 280-470 4-178 (204)
36 KOG0849 Transcription factor P 98.7 1.4E-08 3.1E-13 112.1 4.2 63 87-149 173-235 (354)
37 cd08909 START_STARD13-like C-t 98.6 5.8E-07 1.3E-11 92.4 14.5 124 334-470 51-178 (205)
38 cd08869 START_RhoGAP C-termina 98.5 1.7E-06 3.7E-11 88.2 15.2 161 284-468 4-168 (197)
39 cd08905 START_STARD1-like Chol 98.5 2E-06 4.2E-11 88.6 14.9 189 279-500 6-207 (209)
40 KOG1168 Transcription factor A 98.5 6.2E-08 1.3E-12 101.6 3.7 61 89-149 308-368 (385)
41 PLN00188 enhanced disease resi 98.4 2.7E-06 5.8E-11 99.9 13.9 126 335-472 227-365 (719)
42 cd08906 START_STARD3-like Chol 98.3 1.9E-05 4E-10 81.5 15.8 192 279-500 6-207 (209)
43 KOG0775 Transcription factor S 98.3 6.4E-07 1.4E-11 93.9 3.9 51 97-147 183-233 (304)
44 cd08902 START_STARD4-like Lipi 98.2 3.6E-05 7.7E-10 78.8 15.2 192 279-498 3-200 (202)
45 cd08874 START_STARD9-like C-te 98.1 2.8E-05 6.1E-10 80.1 11.8 128 328-473 43-181 (205)
46 cd08908 START_STARD12-like C-t 98.1 7.2E-05 1.6E-09 77.1 14.0 161 283-468 11-175 (204)
47 cd08876 START_1 Uncharacterize 98.0 0.00012 2.7E-09 73.4 15.0 150 336-499 42-194 (195)
48 cd08910 START_STARD2-like Lipi 97.9 0.00016 3.4E-09 74.5 14.1 147 336-501 50-206 (207)
49 cd08870 START_STARD2_7-like Li 97.9 0.0004 8.6E-09 71.4 16.9 191 287-501 8-208 (209)
50 cd08877 START_2 Uncharacterize 97.8 0.00036 7.8E-09 71.8 14.7 196 279-500 3-213 (215)
51 KOG0774 Transcription factor P 97.8 1.5E-05 3.4E-10 83.0 4.3 58 91-148 189-249 (334)
52 cd08907 START_STARD8-like C-te 97.8 0.00016 3.4E-09 74.3 11.3 163 283-470 11-178 (205)
53 PF05920 Homeobox_KN: Homeobox 97.7 1.1E-05 2.5E-10 62.2 0.3 34 111-144 7-40 (40)
54 cd08911 START_STARD7-like Lipi 97.6 0.0013 2.8E-08 67.8 14.9 149 336-501 46-206 (207)
55 KOG2252 CCAAT displacement pro 97.6 4.1E-05 9E-10 87.2 3.8 59 88-146 418-476 (558)
56 KOG0490 Transcription factor, 97.3 0.00019 4.1E-09 73.8 4.4 64 87-150 150-213 (235)
57 cd08872 START_STARD11-like Cer 97.3 0.0074 1.6E-07 63.6 16.0 189 284-499 9-224 (235)
58 cd08873 START_STARD14_15-like 97.2 0.0033 7.2E-08 66.3 12.3 121 331-466 78-203 (235)
59 cd08871 START_STARD10-like Lip 96.8 0.045 9.7E-07 56.7 15.6 176 546-759 21-201 (222)
60 cd08869 START_RhoGAP C-termina 96.7 0.059 1.3E-06 55.1 15.7 173 546-760 17-196 (197)
61 cd08914 START_STARD15-like Lip 96.7 0.015 3.2E-07 61.5 11.4 123 336-474 79-210 (236)
62 cd08913 START_STARD14-like Lip 96.6 0.026 5.7E-07 59.8 12.5 124 339-475 85-215 (240)
63 KOG1146 Homeobox protein [Gene 96.5 0.0028 6.2E-08 78.6 5.3 61 90-150 903-963 (1406)
64 cd08907 START_STARD8-like C-te 95.6 0.32 7E-06 50.5 14.5 174 545-759 24-203 (205)
65 cd08904 START_STARD6-like Lipi 95.5 0.21 4.6E-06 51.7 12.8 151 547-728 21-176 (204)
66 KOG0773 Transcription factor M 95.2 0.025 5.5E-07 62.4 5.5 62 90-151 239-303 (342)
67 cd08874 START_STARD9-like C-te 95.2 0.19 4.1E-06 52.1 11.3 151 545-728 19-176 (205)
68 cd08868 START_STARD1_3_like Ch 94.5 2 4.4E-05 44.0 16.9 178 547-759 23-206 (208)
69 cd08877 START_2 Uncharacterize 94.3 1.8 3.9E-05 44.6 16.1 117 534-669 10-129 (215)
70 PF11569 Homez: Homeodomain le 94.2 0.016 3.5E-07 48.0 0.6 42 101-142 9-50 (56)
71 cd00177 START Lipid-binding ST 94.1 1.7 3.7E-05 42.6 14.8 148 548-729 15-166 (193)
72 cd08903 START_STARD5-like Lipi 94.0 1.6 3.4E-05 45.2 14.8 179 546-759 20-206 (208)
73 smart00234 START in StAR and p 93.9 1.4 3E-05 44.5 13.9 152 547-728 18-173 (206)
74 cd08876 START_1 Uncharacterize 92.1 3.9 8.4E-05 41.0 14.1 58 545-610 14-71 (195)
75 cd08909 START_STARD13-like C-t 92.1 5.2 0.00011 41.7 15.2 173 548-759 27-203 (205)
76 KOG4196 bZIP transcription fac 92.0 1.1 2.4E-05 43.2 9.2 86 95-214 22-108 (135)
77 cd08867 START_STARD4_5_6-like 91.8 7.2 0.00016 39.9 15.9 165 528-728 8-178 (206)
78 cd08908 START_STARD12-like C-t 91.7 4.5 9.7E-05 42.1 14.2 172 549-759 28-202 (204)
79 cd08873 START_STARD14_15-like 91.5 1.8 3.8E-05 46.0 11.2 66 546-623 53-118 (235)
80 KOG4005 Transcription factor X 91.4 1.8 3.9E-05 45.7 10.7 60 139-212 82-143 (292)
81 cd08914 START_STARD15-like Lip 91.3 2.5 5.3E-05 45.0 12.0 104 545-667 53-159 (236)
82 PRK09413 IS2 repressor TnpA; R 90.9 0.94 2E-05 42.9 7.7 41 94-139 10-51 (121)
83 cd08906 START_STARD3-like Chol 90.3 13 0.00029 38.5 16.2 149 547-726 24-177 (209)
84 PF02183 HALZ: Homeobox associ 89.6 0.88 1.9E-05 36.3 5.3 39 149-215 2-40 (45)
85 cd08866 SRPBCC_11 Ligand-bindi 89.4 6.2 0.00014 37.0 12.1 133 338-500 2-143 (144)
86 cd08860 TcmN_ARO-CYC_like N-te 89.0 6.7 0.00015 38.2 12.2 140 339-501 5-144 (146)
87 cd08870 START_STARD2_7-like Li 88.6 5.5 0.00012 41.0 11.9 110 547-669 21-133 (209)
88 cd08902 START_STARD4-like Lipi 88.4 4 8.6E-05 42.5 10.5 58 546-611 21-78 (202)
89 cd05018 CoxG Carbon monoxide d 87.4 8.6 0.00019 35.7 11.5 121 340-482 6-126 (144)
90 cd07821 PYR_PYL_RCAR_like Pyra 87.0 12 0.00026 34.2 12.1 133 341-499 7-139 (140)
91 KOG2761 START domain-containin 85.5 6.1 0.00013 41.5 10.0 109 344-464 63-183 (219)
92 cd08875 START_ArGLABRA2_like C 85.4 17 0.00037 38.6 13.4 186 526-735 3-204 (229)
93 cd07813 COQ10p_like Coenzyme Q 85.1 11 0.00024 35.3 11.0 135 339-501 3-137 (138)
94 cd08864 SRPBCC_DUF3074 DUF3074 84.6 5.2 0.00011 41.7 9.2 86 387-474 89-184 (208)
95 PF04218 CENP-B_N: CENP-B N-te 84.6 1.1 2.3E-05 36.7 3.3 46 91-141 1-46 (53)
96 KOG3623 Homeobox transcription 84.0 0.65 1.4E-05 55.4 2.4 51 97-148 564-614 (1007)
97 cd07819 SRPBCC_2 Ligand-bindin 83.8 18 0.00039 33.3 11.7 132 339-498 6-139 (140)
98 PF06005 DUF904: Protein of un 83.2 4.6 9.9E-05 35.4 6.8 50 149-219 15-68 (72)
99 PF01852 START: START domain; 82.9 19 0.0004 36.2 12.2 168 530-728 2-173 (206)
100 cd07817 SRPBCC_8 Ligand-bindin 82.9 36 0.00078 31.3 13.3 134 340-500 5-138 (139)
101 cd08861 OtcD1_ARO-CYC_like N-t 82.4 9.6 0.00021 35.6 9.4 137 340-500 4-141 (142)
102 cd08910 START_STARD2-like Lipi 82.2 1.9 4.2E-05 44.5 4.9 59 545-611 22-81 (207)
103 cd07822 SRPBCC_4 Ligand-bindin 79.0 24 0.00052 32.3 10.6 51 447-500 91-141 (141)
104 PRK15422 septal ring assembly 78.1 7.5 0.00016 34.6 6.4 60 146-219 12-75 (79)
105 PF10604 Polyketide_cyc2: Poly 77.0 59 0.0013 29.6 15.5 35 340-378 7-41 (139)
106 cd08913 START_STARD14-like Lip 76.9 3.3 7.2E-05 44.1 4.7 67 545-623 56-122 (240)
107 cd08911 START_STARD7-like Lipi 76.7 21 0.00047 36.7 10.5 180 546-759 19-205 (207)
108 PRK10724 hypothetical protein; 76.7 58 0.0013 32.4 13.1 137 338-502 18-154 (158)
109 TIGR00219 mreC rod shape-deter 72.8 5.4 0.00012 43.5 5.1 42 153-211 67-108 (283)
110 PLN00188 enhanced disease resi 72.6 17 0.00037 44.2 9.6 122 587-729 234-362 (719)
111 COG3074 Uncharacterized protei 72.5 11 0.00025 32.8 5.8 60 146-219 12-75 (79)
112 cd07818 SRPBCC_1 Ligand-bindin 72.2 43 0.00094 31.6 10.7 51 449-500 99-149 (150)
113 cd08865 SRPBCC_10 Ligand-bindi 71.6 79 0.0017 28.7 13.1 136 340-500 4-139 (140)
114 smart00338 BRLZ basic region l 70.5 15 0.00033 30.9 6.3 39 151-210 25-63 (65)
115 PF01527 HTH_Tnp_1: Transposas 70.5 0.76 1.6E-05 39.2 -1.6 44 92-139 2-45 (76)
116 PRK13922 rod shape-determining 69.8 7 0.00015 42.0 5.1 41 153-211 70-110 (276)
117 cd08872 START_STARD11-like Cer 69.6 12 0.00026 39.6 6.8 62 543-611 21-84 (235)
118 PF00170 bZIP_1: bZIP transcri 67.0 22 0.00048 29.8 6.6 24 151-174 25-48 (64)
119 PF06156 DUF972: Protein of un 65.1 11 0.00023 35.5 4.7 21 195-215 37-57 (107)
120 TIGR03752 conj_TIGR03752 integ 64.6 10 0.00023 43.9 5.4 22 150-171 78-99 (472)
121 COG4026 Uncharacterized protei 61.9 27 0.00059 36.9 7.3 51 144-215 141-191 (290)
122 PF14389 Lzipper-MIP1: Leucine 60.1 60 0.0013 29.4 8.4 71 142-215 5-75 (88)
123 PF12711 Kinesin-relat_1: Kine 58.9 23 0.00049 32.2 5.4 24 193-216 43-66 (86)
124 KOG1146 Homeobox protein [Gene 58.6 9.2 0.0002 49.1 3.8 92 91-195 445-537 (1406)
125 PRK13169 DNA replication intia 57.7 16 0.00036 34.5 4.5 21 194-214 36-56 (110)
126 cd07824 SRPBCC_6 Ligand-bindin 56.3 1.8E+02 0.004 27.5 12.5 132 342-495 8-142 (146)
127 cd07823 SRPBCC_5 Ligand-bindin 55.7 1.9E+02 0.0041 27.5 12.4 29 339-367 3-31 (146)
128 KOG4343 bZIP transcription fac 55.7 25 0.00054 41.3 6.4 22 194-215 316-337 (655)
129 PRK00888 ftsB cell division pr 55.3 26 0.00056 32.8 5.4 40 133-173 16-55 (105)
130 KOG0288 WD40 repeat protein Ti 54.0 28 0.00061 39.8 6.3 56 146-215 21-76 (459)
131 smart00340 HALZ homeobox assoc 52.9 13 0.00028 29.4 2.5 20 197-216 15-34 (44)
132 cd08905 START_STARD1-like Chol 52.8 2.8E+02 0.0061 28.6 15.9 77 526-612 5-82 (209)
133 KOG4571 Activating transcripti 51.2 30 0.00066 37.9 5.8 27 148-174 244-270 (294)
134 PF14197 Cep57_CLD_2: Centroso 50.5 38 0.00083 29.4 5.3 46 154-213 21-66 (69)
135 KOG3119 Basic region leucine z 48.9 29 0.00063 37.6 5.3 27 193-219 228-254 (269)
136 COG1792 MreC Cell shape-determ 46.2 34 0.00073 37.4 5.4 43 151-211 65-107 (284)
137 KOG0971 Microtubule-associated 45.4 58 0.0013 40.7 7.5 56 155-216 335-390 (1243)
138 PF07407 Seadorna_VP6: Seadorn 44.7 28 0.0006 38.7 4.3 22 153-174 33-54 (420)
139 PF15058 Speriolin_N: Sperioli 43.8 42 0.00092 34.8 5.2 40 154-215 7-46 (200)
140 KOG3119 Basic region leucine z 43.3 47 0.001 36.1 5.9 16 197-212 239-254 (269)
141 KOG0709 CREB/ATF family transc 41.5 63 0.0014 37.6 6.7 96 94-216 218-315 (472)
142 PF07716 bZIP_2: Basic region 41.0 79 0.0017 25.7 5.5 13 199-211 37-49 (54)
143 PRK13729 conjugal transfer pil 40.9 47 0.001 38.8 5.7 56 142-211 66-121 (475)
144 cd07812 SRPBCC START/RHO_alpha 40.6 2.4E+02 0.0053 24.4 11.3 49 447-496 90-138 (141)
145 cd07823 SRPBCC_5 Ligand-bindin 37.7 14 0.00031 35.2 0.8 26 584-609 3-28 (146)
146 PF07106 TBPIP: Tat binding pr 36.8 49 0.0011 33.0 4.5 71 134-216 56-131 (169)
147 TIGR02209 ftsL_broad cell divi 36.8 1.1E+02 0.0024 26.7 6.2 22 199-221 50-71 (85)
148 cd06171 Sigma70_r4 Sigma70, re 36.6 17 0.00036 27.6 0.9 43 96-143 10-52 (55)
149 cd07819 SRPBCC_2 Ligand-bindin 36.1 25 0.00054 32.3 2.2 29 582-610 4-32 (140)
150 PF10604 Polyketide_cyc2: Poly 36.0 32 0.0007 31.4 2.9 27 583-609 5-31 (139)
151 cd08865 SRPBCC_10 Ligand-bindi 35.9 22 0.00047 32.5 1.7 27 583-609 2-28 (140)
152 PRK14872 rod shape-determining 35.7 55 0.0012 36.8 5.0 42 152-211 57-98 (337)
153 PF15392 Joubert: Joubert synd 34.9 2.6E+02 0.0056 31.3 9.7 34 331-364 240-276 (329)
154 PF10482 CtIP_N: Tumour-suppre 34.8 17 0.00037 34.6 0.8 33 153-185 43-75 (120)
155 KOG1962 B-cell receptor-associ 34.8 88 0.0019 33.1 6.0 20 195-214 180-199 (216)
156 PF04880 NUDE_C: NUDE protein, 34.6 36 0.00078 34.5 3.1 13 199-211 29-41 (166)
157 PRK10884 SH3 domain-containing 33.9 71 0.0015 33.5 5.2 19 157-175 130-148 (206)
158 PF04545 Sigma70_r4: Sigma-70, 33.6 30 0.00066 27.2 2.0 38 96-138 4-41 (50)
159 KOG4196 bZIP transcription fac 33.3 1.9E+02 0.0041 28.4 7.5 20 198-217 99-118 (135)
160 PRK06266 transcription initiat 33.2 31 0.00067 35.2 2.4 35 177-211 136-170 (178)
161 cd07821 PYR_PYL_RCAR_like Pyra 33.0 31 0.00068 31.5 2.3 27 583-609 4-30 (140)
162 PRK10884 SH3 domain-containing 32.6 1.4E+02 0.0031 31.2 7.2 17 157-173 137-153 (206)
163 PF15290 Syntaphilin: Golgi-lo 32.5 5.5E+02 0.012 28.4 11.5 32 142-175 74-105 (305)
164 TIGR02449 conserved hypothetic 32.1 1.8E+02 0.0039 25.2 6.5 41 154-215 9-49 (65)
165 PF06785 UPF0242: Uncharacteri 31.8 57 0.0012 36.5 4.3 73 137-221 54-126 (401)
166 cd04765 HTH_MlrA-like_sg2 Heli 31.7 79 0.0017 29.0 4.6 61 93-165 35-96 (99)
167 TIGR03752 conj_TIGR03752 integ 31.6 94 0.002 36.4 6.1 61 149-215 70-130 (472)
168 cd08901 SRPBCC_CalC_Aha1-like_ 31.6 28 0.00061 32.9 1.7 27 582-608 2-28 (136)
169 PRK00888 ftsB cell division pr 31.4 55 0.0012 30.6 3.6 37 137-173 26-62 (105)
170 KOG4403 Cell surface glycoprot 31.4 1.4E+02 0.003 34.6 7.2 22 283-304 402-423 (575)
171 cd07817 SRPBCC_8 Ligand-bindin 31.1 32 0.00069 31.7 2.0 28 583-610 3-30 (139)
172 cd05018 CoxG Carbon monoxide d 30.7 23 0.00051 32.7 1.0 27 584-610 5-31 (144)
173 PF02183 HALZ: Homeobox associ 30.7 1.1E+02 0.0023 24.6 4.6 18 153-170 13-30 (45)
174 cd07825 SRPBCC_7 Ligand-bindin 30.7 37 0.00079 31.8 2.3 27 583-609 3-29 (144)
175 cd08862 SRPBCC_Smu440-like Lig 30.7 35 0.00075 31.4 2.2 30 581-610 2-31 (138)
176 cd08866 SRPBCC_11 Ligand-bindi 30.7 30 0.00064 32.4 1.7 28 583-610 2-29 (144)
177 cd04781 HTH_MerR-like_sg6 Heli 30.2 2.4E+02 0.0052 26.5 7.7 70 92-174 33-103 (120)
178 cd01106 HTH_TipAL-Mta Helix-Tu 29.9 1.8E+02 0.004 26.5 6.7 37 93-142 35-71 (103)
179 PF04967 HTH_10: HTH DNA bindi 29.5 63 0.0014 26.7 3.2 37 97-133 1-39 (53)
180 PHA03162 hypothetical protein; 28.5 27 0.00058 34.1 1.0 25 188-212 14-38 (135)
181 PRK03975 tfx putative transcri 28.3 61 0.0013 32.0 3.4 47 95-147 5-51 (141)
182 cd07814 SRPBCC_CalC_Aha1-like 28.0 4.6E+02 0.01 23.8 11.3 47 448-500 92-138 (139)
183 cd07812 SRPBCC START/RHO_alpha 27.8 37 0.0008 29.8 1.8 26 584-609 3-28 (141)
184 cd00569 HTH_Hin_like Helix-tur 27.5 70 0.0015 21.4 2.8 37 96-137 5-41 (42)
185 cd07814 SRPBCC_CalC_Aha1-like 27.5 33 0.00071 31.5 1.4 27 583-609 3-29 (139)
186 PF14662 CCDC155: Coiled-coil 27.2 1.1E+02 0.0024 31.8 5.1 58 139-210 82-139 (193)
187 KOG2761 START domain-containin 26.8 84 0.0018 33.3 4.3 59 544-610 25-84 (219)
188 KOG4005 Transcription factor X 26.6 83 0.0018 33.7 4.2 47 151-211 103-149 (292)
189 TIGR02051 MerR Hg(II)-responsi 26.5 3.1E+02 0.0066 26.0 7.8 69 92-173 33-104 (124)
190 cd07818 SRPBCC_1 Ligand-bindin 26.3 1.2E+02 0.0026 28.5 5.0 31 582-612 4-34 (150)
191 PF04423 Rad50_zn_hook: Rad50 26.2 26 0.00057 28.5 0.4 9 179-187 22-30 (54)
192 PRK00118 putative DNA-binding 26.1 1.5E+02 0.0033 27.8 5.5 49 96-149 17-65 (104)
193 cd04783 HTH_MerR1 Helix-Turn-H 26.1 1.7E+02 0.0037 27.7 6.0 70 92-174 34-106 (126)
194 TIGR02894 DNA_bind_RsfA transc 25.7 2.5E+02 0.0054 28.5 7.1 20 197-216 128-147 (161)
195 PTZ00454 26S protease regulato 25.6 1.6E+02 0.0034 33.8 6.6 46 149-215 19-64 (398)
196 PF10224 DUF2205: Predicted co 24.7 3.3E+02 0.0071 24.6 7.0 21 195-215 45-65 (80)
197 PF07334 IFP_35_N: Interferon- 24.5 69 0.0015 28.6 2.7 16 199-214 5-20 (76)
198 KOG4571 Activating transcripti 24.2 1.9E+02 0.0041 32.0 6.4 25 192-216 260-284 (294)
199 PF07989 Microtub_assoc: Micro 24.0 1.8E+02 0.0039 25.7 5.2 60 151-216 6-65 (75)
200 PRK03918 chromosome segregatio 23.3 2E+02 0.0044 35.8 7.5 13 177-189 435-447 (880)
201 cd07822 SRPBCC_4 Ligand-bindin 23.3 63 0.0014 29.5 2.4 26 584-609 4-29 (141)
202 cd04770 HTH_HMRTR Helix-Turn-H 23.3 3.1E+02 0.0067 25.6 7.2 38 92-142 34-71 (123)
203 TIGR00219 mreC rod shape-deter 23.1 2.5E+02 0.0054 30.7 7.3 46 155-217 62-107 (283)
204 PHA00728 hypothetical protein 23.0 72 0.0016 30.8 2.7 26 195-220 6-31 (151)
205 COG1675 TFA1 Transcription ini 22.6 64 0.0014 33.1 2.5 38 178-215 133-170 (176)
206 PF00170 bZIP_1: bZIP transcri 22.3 2.9E+02 0.0062 23.1 6.0 17 197-213 43-59 (64)
207 PF05864 Chordopox_RPO7: Chord 22.0 71 0.0015 27.0 2.1 34 177-215 4-37 (63)
208 cd07820 SRPBCC_3 Ligand-bindin 21.6 56 0.0012 30.7 1.8 26 584-609 3-28 (137)
209 cd04765 HTH_MlrA-like_sg2 Heli 21.5 25 0.00053 32.3 -0.7 20 121-140 4-23 (99)
210 PHA03155 hypothetical protein; 21.3 35 0.00076 32.5 0.3 24 189-212 10-33 (115)
211 KOG4343 bZIP transcription fac 21.1 1E+02 0.0023 36.5 4.0 22 154-175 311-332 (655)
212 PRK01156 chromosome segregatio 21.0 2.3E+02 0.005 35.6 7.4 35 154-188 425-463 (895)
213 PF10845 DUF2576: Protein of u 21.0 1.1E+02 0.0025 24.6 3.0 30 187-216 4-33 (48)
214 PF14645 Chibby: Chibby family 20.8 2.7E+02 0.0059 26.6 6.1 28 147-174 73-100 (116)
215 PF12824 MRP-L20: Mitochondria 20.6 2.1E+02 0.0045 29.0 5.6 45 93-139 82-126 (164)
216 PF13443 HTH_26: Cro/C1-type H 20.5 54 0.0012 26.7 1.2 30 119-148 12-41 (63)
217 PRK02224 chromosome segregatio 20.5 4.1E+02 0.0088 33.3 9.4 14 176-189 450-463 (880)
218 PRK13922 rod shape-determining 20.5 1.7E+02 0.0038 31.3 5.4 43 154-217 64-109 (276)
219 cd04785 HTH_CadR-PbrR-like Hel 20.4 4.2E+02 0.0091 25.1 7.4 71 92-175 34-109 (126)
220 cd01107 HTH_BmrR Helix-Turn-He 20.1 4.2E+02 0.009 24.4 7.2 67 93-172 36-102 (108)
221 COG4467 Regulator of replicati 20.1 1.8E+02 0.0039 27.7 4.6 18 195-212 37-54 (114)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.3e-90 Score=708.01 Aligned_cols=225 Identities=66% Similarity=1.088 Sum_probs=219.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhc
Q 004294 276 KPMIIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILM 355 (763)
Q Consensus 276 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 355 (763)
|++|++||++||+||++||++++|||++++++++|+||+|||.++||+..|+++.|+++|||||||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCC--
Q 004294 356 DVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR-- 433 (763)
Q Consensus 356 D~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~-- 433 (763)
|+++|.++||+||++|+|++||++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~ 160 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTA 160 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --CCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 434 --PSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 434 --~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
..+++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 161 p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 161 PPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 3378999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.73 E-value=3.2e-17 Score=164.76 Aligned_cols=200 Identities=25% Similarity=0.317 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcChh-h
Q 004294 281 ELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDVN-Q 359 (763)
Q Consensus 281 ~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~-~ 359 (763)
|+|+++|.+++++++.++.-|....+ .-+.+.|.+..+. ..+..+..-|..++|...+.++++.|+|.. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~ 71 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKD----KKNGDVYYKKVSP-----SDSCPIKMFKAEGVVPASPEQVVEDLLDDREQ 71 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEE----ETTTCEEEEEEEC-----SSSTSCEEEEEEEEESSCHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEc----cCCCeEEEEEeCc-----cccccceEEEEEEEEcCChHHHHHHHHhhHhh
Confidence 68999999999999999999988652 1122223222221 111356788999999999999999999988 9
Q ss_pred HHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCCC----C
Q 004294 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLRP----S 435 (763)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~----~ 435 (763)
|-.+|- .+..++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.-.. .
T Consensus 72 Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~ 140 (206)
T PF01852_consen 72 WDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSK 140 (206)
T ss_dssp HSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-T
T ss_pred cccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccccccccc
Confidence 999885 55666666643 678888899999999999 99999999999999999999999975432 2
Q ss_pred CCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 436 PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 436 ~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 141 ~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 141 GYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp TSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999999998865
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.70 E-value=6.6e-16 Score=155.61 Aligned_cols=197 Identities=38% Similarity=0.573 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhhcCCCCceeecCCCCccccChHH-HhhcCCCCCCCCCCCCcceeeecceEEEechhh-HHHHhcCh--
Q 004294 282 LAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDE-YVRTFPRGIGPKPTGFKCEASRETAVVIMNHIS-LVEILMDV-- 357 (763)
Q Consensus 282 lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~e-Y~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~-LVe~lmD~-- 357 (763)
-|+.++.|+++++...+..|....+. -|... |.+..+ + +..+.+-|..++|...+.+ +.++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~---~----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~ 70 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSEN----ENGDEVRSILSP---G----RSPGEASRAVGVVPMVCADLVEELMDDLRY 70 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEcccc----CCcceEEEEccC---C----CCceEEEEEEEEEecChHHHHHHHHhcccc
Confidence 37889999999999999999987641 11112 222211 1 2457899999999999997 55677665
Q ss_pred -hhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCCC--
Q 004294 358 -NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLRP-- 434 (763)
Q Consensus 358 -~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~-- 434 (763)
.+|-..| ..++.++.++.+ ..+......+.. +| +..|||.++|++++.++|.|+|+..|++.-..
T Consensus 71 r~~Wd~~~----~~~~~ie~~~~~------~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~ 138 (206)
T smart00234 71 RPEWDKNV----AKAETLEVIDNG------TVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPP 138 (206)
T ss_pred hhhCchhc----ccEEEEEEECCC------CeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCC
Confidence 4555554 456777776632 233333333333 35 55599999999999999999999999975431
Q ss_pred -CCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHH
Q 004294 435 -SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 501 (763)
Q Consensus 435 -~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqcer 501 (763)
..++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2679999999999999999999999999999999987788999999999999999999999999963
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.67 E-value=6.2e-17 Score=163.68 Aligned_cols=82 Identities=33% Similarity=0.566 Sum_probs=75.6
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRY 171 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l 171 (763)
+++.|||.+|+..||+.|+...++.+.+|..||++|||.+|||++||||||||||.++.+.++..|+.+++.|+.++..+
T Consensus 52 ~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~L 131 (198)
T KOG0483|consen 52 GKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRL 131 (198)
T ss_pred cccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHH
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999998887774
Q ss_pred HH
Q 004294 172 RE 173 (763)
Q Consensus 172 ~~ 173 (763)
..
T Consensus 132 q~ 133 (198)
T KOG0483|consen 132 QS 133 (198)
T ss_pred HH
Confidence 43
No 5
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.65 E-value=3.4e-16 Score=166.72 Aligned_cols=68 Identities=34% Similarity=0.517 Sum_probs=63.2
Q ss_pred CCCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHH
Q 004294 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 86 ~~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
.+++|||+|..||..|+.+||+.|+..+|++..+|+.||+.|+|++.||||||||||-|.||+++.++
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 35667888999999999999999999999999999999999999999999999999999999876654
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.60 E-value=3.3e-16 Score=168.83 Aligned_cols=65 Identities=35% Similarity=0.499 Sum_probs=61.1
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
.+|+||.|+.||..|+..||+.|++.+|++..+|.+||++|||+..|||+||||||+||||+.++
T Consensus 169 pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 169 PKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 35678889999999999999999999999999999999999999999999999999999997655
No 7
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.58 E-value=3e-15 Score=159.67 Aligned_cols=66 Identities=35% Similarity=0.427 Sum_probs=60.7
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
++.||||..||..|+.+||+.|..|.|.+.+.|.+|++.|+|++|||||||||||+|+||..++..
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhh
Confidence 345778889999999999999999999999999999999999999999999999999999875443
No 8
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.56 E-value=1.6e-15 Score=148.76 Aligned_cols=64 Identities=31% Similarity=0.457 Sum_probs=60.7
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
|-||.||.||.+|+..||..|+.++|....+|++||+.|+|++.||||||||||+|.||++.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 3488899999999999999999999999999999999999999999999999999999987775
No 9
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.56 E-value=2.3e-15 Score=154.22 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=67.9
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHhHHHHHHHH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENE 162 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene 162 (763)
+.|||+-||.||..|+++||+.|++.+||+...|+.||.++.|.+.+|+|||||||+||||..++.......+|+-
T Consensus 138 k~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 138 KKKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred ccccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 3334444899999999999999999999999999999999999999999999999999999999888777776653
No 10
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.56 E-value=1.1e-15 Score=137.66 Aligned_cols=65 Identities=28% Similarity=0.548 Sum_probs=60.7
Q ss_pred CCCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 86 ~~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
.++|+||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++..|||||||||+|.|||.+
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999998543
No 11
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.55 E-value=3.1e-15 Score=150.17 Aligned_cols=61 Identities=33% Similarity=0.441 Sum_probs=58.7
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+|||.|+.|+..|+..||..|+..+|++..+|.-||++|.|++.|||+||||||.||||+-
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999954
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.55 E-value=4.5e-15 Score=150.67 Aligned_cols=65 Identities=29% Similarity=0.443 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 86 ~~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+.+|.||.||.|+.-|++.|.+.|+++.|+--.+|.+||.+|||+..||||||||||.|.||..+
T Consensus 118 k~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 118 KGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 34556889999999999999999999999999999999999999999999999999999999765
No 13
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.54 E-value=1.2e-15 Score=161.28 Aligned_cols=63 Identities=30% Similarity=0.458 Sum_probs=59.3
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
+.||.|+.||..|+.+||+.|..++|++..+|.+||..|.|+++||||||||||+||||..+.
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Confidence 358899999999999999999999999999999999999999999999999999999985543
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.50 E-value=3.2e-14 Score=146.77 Aligned_cols=68 Identities=31% Similarity=0.453 Sum_probs=61.6
Q ss_pred CCCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHH
Q 004294 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 86 ~~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
|-+.|-|-|.+||..|..+||+.|..++|..+.++.+||.-|||+||||||||||||+|+||..+++.
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 34445677889999999999999999999999999999999999999999999999999999776654
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.48 E-value=2.8e-14 Score=142.66 Aligned_cols=65 Identities=32% Similarity=0.450 Sum_probs=60.2
Q ss_pred CCCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 86 ~~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
|++..||.|+.||..|+..||+.|++.+|++..+|.+++..|.|++.|||+||||||+|.||.|+
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 34446889999999999999999999999999999999999999999999999999999999554
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.44 E-value=5.3e-14 Score=114.77 Aligned_cols=57 Identities=44% Similarity=0.795 Sum_probs=54.9
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
||+|+.||.+|+..||..|..++||+..++..||.++||++.||++||||||+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999986
No 17
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.44 E-value=7.1e-14 Score=141.47 Aligned_cols=66 Identities=27% Similarity=0.536 Sum_probs=61.7
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
.+|.||.||+||-.|+++||..|.+..||+...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 34 pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 34 PRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred chhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 345689999999999999999999999999999999999999999999999999999999977654
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.37 E-value=3.5e-13 Score=138.43 Aligned_cols=59 Identities=39% Similarity=0.638 Sum_probs=56.5
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
||.|+.||.+|++.|...|++++|+.+..|++||.+|||.+.|||+||||+|+|.||..
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 67899999999999999999999999999999999999999999999999999999853
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.29 E-value=1.2e-12 Score=136.87 Aligned_cols=60 Identities=30% Similarity=0.407 Sum_probs=57.2
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
-||-||.||.|||..||+.|-+..|-+.+.|.+||..|+|++..|||||||||+|+|||.
T Consensus 181 mRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 181 MRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhh
Confidence 378899999999999999999999999999999999999999999999999999999864
No 20
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.29 E-value=2.4e-12 Score=135.75 Aligned_cols=61 Identities=28% Similarity=0.542 Sum_probs=58.4
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
.|+||.|+.||.+|+++||..|+++.||+...|++||...+|++.+|++||.|||+||||.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkr 170 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 170 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhh
Confidence 3678899999999999999999999999999999999999999999999999999999983
No 21
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.27 E-value=1.1e-10 Score=114.75 Aligned_cols=183 Identities=22% Similarity=0.350 Sum_probs=138.1
Q ss_pred HHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC---hhhHH
Q 004294 285 AAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD---VNQWS 361 (763)
Q Consensus 285 ~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD---~~~W~ 361 (763)
+|..+++.+.+.+ ..|-...+.+ +..-|.+..+. -....-|..+.|..++.++.++|+| +.+|-
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~----~v~vy~~~~~~--------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~ 68 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD----GVKIYTKPYED--------SGLKLLKAEGVIPASPEQVFELLMDIDLRKKWD 68 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC----cEEEEEecCCC--------CCceeEEEEEEECCCHHHHHHHHhCCchhhchh
Confidence 4667888887766 6798765421 22334444331 1246789999999999999999999 55565
Q ss_pred hhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCC--CCC-CCc
Q 004294 362 TVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL--RPS-PAV 438 (763)
Q Consensus 362 ~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~--~~~-~~~ 438 (763)
..| .++..++.++ . ...++|..+..|.| +..|||.++|++.+.++|.++++..|+|.- ... .++
T Consensus 69 ~~~----~~~~vl~~~~---~-----~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~v 135 (193)
T cd00177 69 KNF----EEFEVIEEID---E-----HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYV 135 (193)
T ss_pred hcc----eEEEEEEEeC---C-----CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcE
Confidence 544 3344444433 2 26889999999999 999999999999999999999999999873 222 679
Q ss_pred eeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004294 439 RCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (763)
Q Consensus 439 ~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqR 497 (763)
|++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 136 R~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 136 RAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 9999999999999999999999999999886533 455666666777777777654
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.27 E-value=2.6e-12 Score=103.93 Aligned_cols=55 Identities=40% Similarity=0.719 Sum_probs=51.9
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (763)
+.|++|+.+|+..||..|..++||+..++.+||.++||+..||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999998864
No 23
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.27 E-value=5.9e-13 Score=129.06 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=60.7
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
+++|.|+.|+..|+..||+.|+..+|++-.+|.+||..|+|+++|||.||||||+|.||++++.+
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 35788999999999999999999999999999999999999999999999999999999776544
No 24
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.27 E-value=5.7e-12 Score=104.18 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=50.7
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCC----CCHHHHHHHHHHhCCCCcceeecccchh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPH----PDDKQRKELSRELGLEPLQVKFWFQNKR 142 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~----Ps~~~r~~LA~~LgL~~rQVkvWFQNRR 142 (763)
+||.||.||++|+..||..|+.++| |+...+.+||.++||++++||+||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3788999999999999999999999 9999999999999999999999999964
No 25
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.25 E-value=3.7e-12 Score=103.68 Aligned_cols=57 Identities=42% Similarity=0.780 Sum_probs=53.9
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
+.+..++.+|+..||..|..++||+..++..||.++||+++||+.||+|||.+.|+.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999999999999999998863
No 26
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.21 E-value=7.3e-12 Score=122.99 Aligned_cols=64 Identities=33% Similarity=0.495 Sum_probs=58.8
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
.+++|+|.|.+|+.+|++.|+.++||+...|..|+..++|+++-||+||||||++.|++.....
T Consensus 51 ~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 51 PKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred CcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 3667788999999999999999999999999999999999999999999999999999765543
No 27
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.18 E-value=6.9e-12 Score=126.33 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=59.8
Q ss_pred CCCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 86 QRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 86 ~~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+..+||..|..|+..||..||+.|+..+|+-..+|.+||..+|+++.||+|||||||+||||+..
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 34556778889999999999999999999999999999999999999999999999999999643
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.13 E-value=3.6e-11 Score=131.16 Aligned_cols=60 Identities=25% Similarity=0.429 Sum_probs=58.0
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
|||||||.++......||++|.+|++|+..++..||.+|+|+...|+|||+|||.|+||.
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccC
Confidence 678899999999999999999999999999999999999999999999999999999984
No 29
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.08 E-value=7.4e-09 Score=106.81 Aligned_cols=197 Identities=16% Similarity=0.246 Sum_probs=145.0
Q ss_pred HHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEE-EechhhHHHHhcCh---hh
Q 004294 284 VAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVV-IMNHISLVEILMDV---NQ 359 (763)
Q Consensus 284 ~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~~ 359 (763)
++.+++|+.++..+ .-|-...+.. -.++|.+.. .+-..-.-|..+++ ...+..+.+.|+|. .+
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~--------gi~iy~r~~----~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKN--------NVKVWTKNP----ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCC--------CeEEEEeeC----CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 68899999999754 4797654321 122332111 12222345666665 57889999999995 77
Q ss_pred HHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCC-C--CC
Q 004294 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR-P--SP 436 (763)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~-~--~~ 436 (763)
|-..|- .+..++-+. ....++|..+..|-| |..|||.++|..+..+ |..+|+..|++.-. | ..
T Consensus 76 Wd~~~~----e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g 141 (222)
T cd08871 76 WDSNMI----ESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKG 141 (222)
T ss_pred hhhhhc----eeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCC
Confidence 777663 344555443 223788988989988 8999999999998776 88899999987432 1 26
Q ss_pred CceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004294 437 AVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERLASVMATNIP 511 (763)
Q Consensus 437 ~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqcerla~~~~~~ip 511 (763)
++|.....+|++|++.+++.|+|||+-|++..-+ +|. -+++..+.-++-.++..|+++|+.....++..-|
T Consensus 142 ~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~ 212 (222)
T cd08871 142 FVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNP 212 (222)
T ss_pred eEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999999999988765 443 3466667777889999999999999888777554
No 30
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.07 E-value=1.3e-10 Score=121.22 Aligned_cols=64 Identities=28% Similarity=0.509 Sum_probs=60.1
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
.||.|+.+|..|++.|...|+..++|...-|++|+.++||.-|.|||||||||+|+||.++...
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAG 230 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAG 230 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcc
Confidence 4889999999999999999999999999999999999999999999999999999999766544
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.99 E-value=1.6e-08 Score=103.16 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC--
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD-- 356 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-- 356 (763)
+-.+|..|.+|++++.. .+.-|....+. ++.+.+.+. +. ++..-.-|..|.+..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~--------~~i~v~~~~-~~---~~~~~~~k~~~~i~~~~~~v~~~l~d~~ 69 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTV--------KNITVSWKP-ST---EFTGHLYRAEGIVDALPEKVIDVIIPPC 69 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcC--------CCcEEEEec-CC---CCCCEEEEEEEEEcCCHHHHHHHHHhcC
Confidence 34688999999999987 44779765432 112222210 11 12222358888999999999999998
Q ss_pred ---hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhc-CCCCccCceeEEEEeeeeeCCceEEEEEEecCCC
Q 004294 357 ---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQV-PSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL 432 (763)
Q Consensus 357 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~ 432 (763)
+.+|...| ..+..++-|.. ...++|..+-- +.++|..|||.++||.++.++|.++++-.|++.-
T Consensus 70 ~~~r~~Wd~~~----~~~~~le~id~--------~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp 137 (206)
T cd08867 70 GGLRLKWDKSL----KHYEVLEKISE--------DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIP 137 (206)
T ss_pred ccccccccccc----cceEEEEEeCC--------CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCC
Confidence 47797665 45566665541 12455553221 2357999999999999999999999999999533
Q ss_pred --CCC-CCceeeecCccceEEecC--CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004294 433 --RPS-PAVRCRRRPSGCLIQEMP--NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (763)
Q Consensus 433 --~~~-~~~~~~~lPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqc 499 (763)
.+. .++|+...++|++|++.+ ++.|+|||+-|++.-- .+| +-++++.++=+.--|+..|++|.
T Consensus 138 ~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 138 ERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 222 679999999999999886 5789999999998764 333 45688888888888999998774
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.98 E-value=1.2e-08 Score=104.38 Aligned_cols=193 Identities=17% Similarity=0.258 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHH-hcC-
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEI-LMD- 356 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~-lmD- 356 (763)
-..+++.|++|++.+.. ++-|-...+... +..=|.|..| | .+ -.-|..++|...+..+++. |.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~---~i~i~~r~~~---~---~~---~~~k~~~~i~~~~~~v~~~l~~d~ 71 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTW---GDVVYSRNVP---G---VG---KVFRLTGVLDCPAEFLYNELVLNV 71 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCC---CCEEEEEEcC---C---Cc---eEEEEEEEEcCCHHHHHHHHHcCc
Confidence 56789999999999954 558976543100 0112333332 1 12 4578889999999999764 445
Q ss_pred --hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcC-CCCccCceeEEEEeeeeeCCceEEEEEEecCCC-
Q 004294 357 --VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVP-SPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL- 432 (763)
Q Consensus 357 --~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~- 432 (763)
+.+|-..|- ..++|..-. +...++|.-+..+ .++|..|||.++|+.++.+ |.++|+..|++.-
T Consensus 72 ~~~~~Wd~~~~-------~~~~i~~~d-----~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~ 138 (208)
T cd08868 72 ESLPSWNPTVL-------ECKIIQVID-----DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPA 138 (208)
T ss_pred cccceecCccc-------ceEEEEEec-----CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCC
Confidence 467877763 344444432 2234566444333 3689999999999999866 6799999998732
Q ss_pred CC--CCCceeeecCccceEEecCC--CceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004294 433 RP--SPAVRCRRRPSGCLIQEMPN--GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (763)
Q Consensus 433 ~~--~~~~~~~~lPSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqcerl 502 (763)
.| ..++|+...++|++|+++++ +.|+|||+-|++..-+ +|. -++++.+.-+.-.|++.|+++|+.|
T Consensus 139 ~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 139 MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 22 26899999999999999987 6899999999987755 333 2388888889999999999998753
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.89 E-value=8.9e-10 Score=113.07 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=59.8
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+.++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4557889999999999999999999999999999999999999999999999999999998543
No 34
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.78 E-value=2.2e-07 Score=95.51 Aligned_cols=191 Identities=17% Similarity=0.243 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcCh-
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDV- 357 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~- 357 (763)
-.+++++|+++++.+-+ .+..|-...++ ++.+++.+..... .| =.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~--------~~i~v~~~~~~~~-~~---~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRT--------NEVAVSWRPSAEF-AG---NLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcC--------CCEEEEeeecCCC-CC---cEEEEEEEecCCHHHHHHHHHhcc
Confidence 35789999999999974 66789765432 2333442211111 11 12788899999999999999965
Q ss_pred ----hhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCC---CccCceeEEEEeeeeeCCceEEEEEEecC
Q 004294 358 ----NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP---LVPTRESYYVRYCKQHGEGTWAVVDVSLD 430 (763)
Q Consensus 358 ----~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~Sp---Lvp~Re~~fLRyckq~~~g~w~VvDvS~d 430 (763)
.+|-..|- .++-++-|. . ...+.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|+.
T Consensus 70 ~~~r~~W~~~~~----~~~vle~id---~-----~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~ 135 (208)
T cd08903 70 GGLRVKWDQNVK----DFEVVEAIS---D-----DVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE 135 (208)
T ss_pred chhhhhhhhccc----cEEEEEEec---C-----CEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc
Confidence 68988873 334444444 1 1233443 45555 79999999999999999999888777776
Q ss_pred C-CCC--CCCceeeecCccceEEecCC--CceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 431 N-LRP--SPAVRCRRRPSGCLIQEMPN--GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 431 ~-~~~--~~~~~~~~lPSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
. .-| ..++|++..|+|++|.+.++ +.|+|+|+-|++.- ..+| +.++++.++=...-.+..|+++..
T Consensus 136 h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 136 HPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 5 222 27899999999999999964 58999999888764 2455 355655555555567777766543
No 35
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.78 E-value=1.5e-07 Score=96.75 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcChhh
Q 004294 280 IELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDVNQ 359 (763)
Q Consensus 280 ~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~~ 359 (763)
..|+++|++|++++-+ +.-.|-.-..+ .+..++.+. ...+.+---|..|+|..++.+|+|.+-|.+.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~--------~~~~v~~k~----~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~ 70 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTS--------KKITVSWKP----SRKYHGNLYRVEGIIPESPAKLIQFMYQPEH 70 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecC--------CceEEEEEE----cCCCCceEEEEEEEecCCHHHHHHHHhccch
Confidence 5789999999999977 55788764332 111111110 1122335678999999999999999998765
Q ss_pred HHhhhccccccceEeEEeecccCCCCCCeeeeeehhhh-cCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCC--C-C
Q 004294 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ-VPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR--P-S 435 (763)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~--~-~ 435 (763)
..+--+ .+.....++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++.-. + .
T Consensus 71 r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~ 141 (204)
T cd08904 71 RIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSS 141 (204)
T ss_pred hhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCC
Confidence 543333 334455555544 22246665554 355789999999999999999999999999997543 2 2
Q ss_pred CCceeeecCccceEEecCCC--ceEEEEEEeeeecCc
Q 004294 436 PAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDR 470 (763)
Q Consensus 436 ~~~~~~~lPSGclIq~~~nG--~skVtwVeH~e~d~~ 470 (763)
.++|++..|+||+|++.+++ +|++||+-++++.-+
T Consensus 142 g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 142 NYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 68999999999999999875 899999999777643
No 36
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.66 E-value=1.4e-08 Score=112.13 Aligned_cols=63 Identities=30% Similarity=0.603 Sum_probs=58.9
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+++.+|.|+.|++.|+..||+.|+.++||+...|++||+++++++..|++||+|||++++|+.
T Consensus 173 ~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 173 QRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred cccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 455677789999999999999999999999999999999999999999999999999999854
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.63 E-value=5.8e-07 Score=92.44 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=96.3
Q ss_pred ceeeecceEEEechhhH-HHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEE
Q 004294 334 CEASRETAVVIMNHISL-VEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVR 412 (763)
Q Consensus 334 ~EAsR~~g~V~~~~~~L-Ve~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLR 412 (763)
.-+-|....|.-.+..+ -.++-++..|-..|- .+++++-|. +...+.|--+.-|-|+ |.|||+.+|
T Consensus 51 lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~----~~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v~~R 117 (205)
T cd08909 51 LRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFL----QWKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFVVLR 117 (205)
T ss_pred eEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcc----eeEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEEEEE
Confidence 34667666776666666 446778888988873 556666554 2235666666666676 999999999
Q ss_pred eeeee-CCceEEEEEEecCCCCC--CCCceeeecCccceEEecCCCceEEEEEEeeeecCc
Q 004294 413 YCKQH-GEGTWAVVDVSLDNLRP--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDR 470 (763)
Q Consensus 413 yckq~-~~g~w~VvDvS~d~~~~--~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~ 470 (763)
+-++. ++|.++|+..|++.-.. ..++|+..+-+|++|+++++|.|+||++-|++..-+
T Consensus 118 ~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 118 SWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 97654 69999999999987643 367999999999999999999999999999987543
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.54 E-value=1.7e-06 Score=88.19 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=117.2
Q ss_pred HHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC-hhhHHh
Q 004294 284 VAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD-VNQWST 362 (763)
Q Consensus 284 ~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-~~~W~~ 362 (763)
+.+.++|++-+...+.-|.-..+.. +-.=|.|..| .+....+=|..++|...+.++++.|+| +.+|-.
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~----gi~I~~k~~~-------~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~ 72 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSD----HVELAFKKVD-------DGHPLRLWRASTEVEAPPEEVLQRILRERHLWDD 72 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCC----cEEEEEEeCC-------CCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccch
Confidence 5778899999998899998643310 1111222221 133445668888898889999886666 455777
Q ss_pred hhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeee-eCCceEEEEEEecCC--CCCCCCce
Q 004294 363 VFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQ-HGEGTWAVVDVSLDN--LRPSPAVR 439 (763)
Q Consensus 363 ~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq-~~~g~w~VvDvS~d~--~~~~~~~~ 439 (763)
.|- +++.++-|+ . ...+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++. ..+..++|
T Consensus 73 ~~~----~~~vie~id---~-----~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR 139 (197)
T cd08869 73 DLL----QWKVVETLD---E-----DTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVR 139 (197)
T ss_pred hhh----eEEEEEEec---C-----CcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEE
Confidence 662 344444443 2 23578877777877 59999999998875 678899999999953 33338899
Q ss_pred eeecCccceEEecCCCceEEEEEEeeeec
Q 004294 440 CRRRPSGCLIQEMPNGYSKVTWVEHVEVD 468 (763)
Q Consensus 440 ~~~lPSGclIq~~~nG~skVtwVeH~e~d 468 (763)
++.+++|++|++.++|.|+|||+-|++.-
T Consensus 140 ~~~~~~g~~i~p~~~~~t~vty~~~~Dp~ 168 (197)
T cd08869 140 AVVLASRYLIEPCGSGKSRVTHICRVDLR 168 (197)
T ss_pred EEEEeeeEEEEECCCCCeEEEEEEEECCC
Confidence 99999999999999999999999999864
No 39
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.52 E-value=2e-06 Score=88.55 Aligned_cols=189 Identities=14% Similarity=0.242 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeec-CC-CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhc-
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTS-LD-GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILM- 355 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~-~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm- 355 (763)
-..++.+|++|++++.+ .+..|-.. .+ .+..| |.+.+| +. | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~gi~v-----~s~~~~---~~---~---k~~k~e~~i~~~~~~l~~~l~~ 70 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENGDKV-----LSKVVP---DI---G---KVFRLEVVVDQPLDNLYSELVD 70 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCCCEE-----EEEEcC---CC---C---cEEEEEEEecCCHHHHHHHHHh
Confidence 46789999999999986 66689765 22 11111 234443 11 1 456677899999999995555
Q ss_pred C---hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEEeeeeeCCceEEEEEEecC
Q 004294 356 D---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVRYCKQHGEGTWAVVDVSLD 430 (763)
Q Consensus 356 D---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~Sp--Lvp~Re~~fLRyckq~~~g~w~VvDvS~d 430 (763)
| ..+|...|- -.++|..... .--++|. ..++.| +|..|||..+|+.++.+++. +++..|.+
T Consensus 71 d~e~~~~W~~~~~-------~~~vl~~id~-----~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~ 136 (209)
T cd08905 71 RMEQMGEWNPNVK-------EVKILQRIGK-----DTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATH 136 (209)
T ss_pred chhhhceecccch-------HHHHHhhcCC-----CceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeec
Confidence 4 266777663 3344443322 1245664 667766 79999999999999986654 45566654
Q ss_pred CC--CCC-CCceeeecCccceEEecCC--CceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 431 NL--RPS-PAVRCRRRPSGCLIQEMPN--GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 431 ~~--~~~-~~~~~~~lPSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
.- .+. .++|++..++|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..--++..|+++.+
T Consensus 137 ~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 137 FGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 22 222 6899999999999999988 9999999999987655 443 45777777777889999987765
No 40
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.51 E-value=6.2e-08 Score=101.62 Aligned_cols=61 Identities=25% Similarity=0.488 Sum_probs=57.3
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.|||+|+.+...+.+.||.+|...++|+.+....+|++|+|....|+|||+|.|.|.||..
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 4688899999999999999999999999999999999999999999999999999998843
No 41
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.40 E-value=2.7e-06 Score=99.89 Aligned_cols=126 Identities=21% Similarity=0.363 Sum_probs=102.3
Q ss_pred eeeecceEEEechhhHHHHhcChh----hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhh--cCCCCccCcee
Q 004294 335 EASRETAVVIMNHISLVEILMDVN----QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRES 408 (763)
Q Consensus 335 EAsR~~g~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SpLvp~Re~ 408 (763)
-+=|+.|+|...+.+|.|.+|+.+ +|=..| ..++-++-| +|...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~----~~~~vIE~I--------D~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSF----QYGSLVEEV--------DGHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcc----cceEEEEEe--------cCCeEEEEEEeccccccCccCccee
Confidence 567889999999999999999766 676665 455555554 355678877775 45567777999
Q ss_pred EEEEeeeeeCCceEEEEEEecCCCCC---CCCceeeecCccceEEecC--C--CceEEEEEEeeeecCccc
Q 004294 409 YYVRYCKQHGEGTWAVVDVSLDNLRP---SPAVRCRRRPSGCLIQEMP--N--GYSKVTWVEHVEVDDRGV 472 (763)
Q Consensus 409 ~fLRyckq~~~g~w~VvDvS~d~~~~---~~~~~~~~lPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 472 (763)
+++||-+..+||+++|+=+|+..-.. ..|+|++..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999999999999999875431 2789999999999999964 3 379999999999998874
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.30 E-value=1.9e-05 Score=81.50 Aligned_cols=192 Identities=14% Similarity=0.185 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCC--CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHH-HHhc
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTSLD--GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLV-EILM 355 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~--~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lm 355 (763)
....+.+||+++.++... +..|.-... .+..| |.+..| +.. ..| |.-++|...+..|. +.|.
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~gi~V-----~s~~~~---~~~-~~f-----k~~~~v~~~~~~l~~~ll~ 70 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNGDTV-----YTLEVP---FHG-KTF-----ILKAFMQCPAELVYQEVIL 70 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCCCEE-----EEeccC---CCC-cEE-----EEEEEEcCCHHHHHHHHHh
Confidence 456789999999999765 457974321 11111 111121 111 223 66677778888885 6788
Q ss_pred ChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEEeeeeeCCceEEEEEEecCCCC
Q 004294 356 DVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVRYCKQHGEGTWAVVDVSLDNLR 433 (763)
Q Consensus 356 D~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~Sp--Lvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~ 433 (763)
|.+...+=.+.+ ...+||..... .--+.| ++-.|.+ .|..|||-.+|+.++.+++ ++++..|++.-.
T Consensus 71 D~~~~~~W~~~~----~~~~vi~~~~~-----~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~ 139 (209)
T cd08906 71 QPEKMVLWNKTV----SACQVLQRVDD-----NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSH 139 (209)
T ss_pred ChhhccccCccc----hhhhheeeccC-----CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCC
Confidence 875444333322 23344443322 123556 6666664 7999999999999998888 567778875321
Q ss_pred -C-C-CCceeeecCccceEEec--CCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 434 -P-S-PAVRCRRRPSGCLIQEM--PNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 434 -~-~-~~~~~~~lPSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
| . .++|.+..++|++|++. .+|.|+|||+-|++.-- .+| +.|++..++=..--.+..|+++.+
T Consensus 140 ~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 140 KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2 78999999999999985 57799999999998765 333 345776666666667777766544
No 43
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.25 E-value=6.4e-07 Score=93.86 Aligned_cols=51 Identities=24% Similarity=0.543 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 97 fT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
|...-...|..+|..++||+..++.+||+.+||+..||-.||.|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 555667899999999999999999999999999999999999999999984
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.20 E-value=3.6e-05 Score=78.83 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC--
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD-- 356 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-- 356 (763)
...+|.++-+++++--+.++-.|-.-...+..+. |. .| +..+.+---|.-|+|.-.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~~~v----~~--k~------~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~ 70 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKDVTV----WR--KP------SEEFGGYLYKAQGVVEDVYNRIVDHIRPGP 70 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCCEEE----EE--ec------CCcCCCceEEEEEEecCCHHHHHHHHhccc
Confidence 3567888888899987779999976432110110 00 11 1123334557778888899999999999
Q ss_pred -hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCCCCC-
Q 004294 357 -VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNLRP- 434 (763)
Q Consensus 357 -~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~~~- 434 (763)
+.+|=+.+ ..++.|+-|. .+++-.-|.=.-.+-++|-+|||.-+||+++.++|. ..|=||++.-..
T Consensus 71 ~r~~Wd~~v----~~~~Iie~Id-------~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~p 138 (202)
T cd08902 71 YRLDWDSLM----TSMDIIEEFE-------ENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEAR 138 (202)
T ss_pred chhcccchh----hheeHhhhhc-------CCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCC
Confidence 55998876 3334444333 223222255555677899999999999999999998 777899886432
Q ss_pred CCCceeeecCccceEEecCCC--ceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004294 435 SPAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (763)
Q Consensus 435 ~~~~~~~~lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRq 498 (763)
..++|++..|+||++.+.+|| .|+.||+-++++.-+ |=+-++++.++=..=-....|+++
T Consensus 139 pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 139 PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 278999999999999999998 677889999777644 334456555554444455555543
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.09 E-value=2.8e-05 Score=80.14 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=94.4
Q ss_pred CCCCCcceeeecceEEEechhhHHHHhcCh---hhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCC-c
Q 004294 328 KPTGFKCEASRETAVVIMNHISLVEILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPL-V 403 (763)
Q Consensus 328 ~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpL-v 403 (763)
+..+|.+ -++|...+.+|++.|.|. .+|-.++ .+.+||..-. ....++|..+..|=|+ +
T Consensus 43 ~~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~~-------~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~ 105 (205)
T cd08874 43 TYHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTMI-------KTARIHKTFT-----EDICLVYLVHETPLCLLK 105 (205)
T ss_pred CcceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHhh-------hheeeeeecC-----CCeEEEEEEecCCCCCCC
Confidence 4556664 347788999999999886 5677776 4667777433 2335677776666555 3
Q ss_pred cCceeEEEEeeeeeCCceEEEEEEecCC-CCC--C-CCceeeecCccceEEec---CCCceEEEEEEeeeecCcccc
Q 004294 404 PTRESYYVRYCKQHGEGTWAVVDVSLDN-LRP--S-PAVRCRRRPSGCLIQEM---PNGYSKVTWVEHVEVDDRGVH 473 (763)
Q Consensus 404 p~Re~~fLRyckq~~~g~w~VvDvS~d~-~~~--~-~~~~~~~lPSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 473 (763)
+.|||..+|-....+++.. |.=.|++. ..| . .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 106 ~~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 106 QPRDFCCLQVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCCeEEEEEEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 9999999995555555544 66688876 433 2 58999999999999999 999999999999987533444
No 46
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.05 E-value=7.2e-05 Score=77.11 Aligned_cols=161 Identities=19% Similarity=0.277 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhhcCCCCceeecCC-CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHh-cChhhH
Q 004294 283 AVAAMEELIRMAQMGEPLWMTSLD-GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEIL-MDVNQW 360 (763)
Q Consensus 283 A~~Am~El~~la~~~eplWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l-mD~~~W 360 (763)
-+..+++|++.|..--=-|+.-.. ..-|. .|.|. ..|-..-.-|....+.-.+..++..| -|+.+|
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~~el----~~~k~--------~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~W 78 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQAEL----SYKKV--------SEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLW 78 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCcEEE----EEecc--------CCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHH
Confidence 367788888888755556765322 11111 11121 12223345566666777777777544 456778
Q ss_pred HhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee-eeCCceEEEEEEecCCCC-CCCCc
Q 004294 361 STVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK-QHGEGTWAVVDVSLDNLR-PSPAV 438 (763)
Q Consensus 361 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyck-q~~~g~w~VvDvS~d~~~-~~~~~ 438 (763)
-..|- .++.++-|+ .. -.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. |-.++
T Consensus 79 d~~~~----e~~vIe~ld---~~-----~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~V 145 (204)
T cd08908 79 DVDLL----DSKVIEILD---SQ-----TEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVAGV 145 (204)
T ss_pred HHHhh----heEeeEecC---CC-----ceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcCce
Confidence 88873 455666555 11 1478888889988 7999999997765 478999999999986432 22469
Q ss_pred eeeecCccceEEecCCCceEEEEEEeeeec
Q 004294 439 RCRRRPSGCLIQEMPNGYSKVTWVEHVEVD 468 (763)
Q Consensus 439 ~~~~lPSGclIq~~~nG~skVtwVeH~e~d 468 (763)
|++.+-+|++|+++++|.|+||.+-|++--
T Consensus 146 R~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 146 RVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred EEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 999999999999999999999999999753
No 47
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.03 E-value=0.00012 Score=73.44 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=106.0
Q ss_pred eeecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee
Q 004294 336 ASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK 415 (763)
Q Consensus 336 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyck 415 (763)
.-|.+++|..++.++.+++.|.+.|.+-=|.+ ...+||.....+ -.++|..+..|=| |..|||.+.|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~----~~~~vie~~~~~-----~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNC----KESRVLKRTDDN-----ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc----ceEEEeecCCCC-----cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 55888899999999999999988876655543 344555543221 2456665665544 7899999876544
Q ss_pred ee-CCceEEEEEEecCCCCC--CCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHH
Q 004294 416 QH-GEGTWAVVDVSLDNLRP--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWV 492 (763)
Q Consensus 416 q~-~~g~w~VvDvS~d~~~~--~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWl 492 (763)
.. ++|..+|.=.|.+.-.| ..++|++.+.+|+.|++.++|.|+||++-|++..-+-..-+.+.+. .=+...++
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~~~l 187 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAPYNTL 187 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHHHHH
Confidence 33 36777777677754322 2678999999999999999999999999999886543334444443 34566888
Q ss_pred HHHHHHH
Q 004294 493 ATLDRQC 499 (763)
Q Consensus 493 atLqRqc 499 (763)
++|+++|
T Consensus 188 ~~l~~~~ 194 (195)
T cd08876 188 ENLRKQL 194 (195)
T ss_pred HHHHHhh
Confidence 8887665
No 48
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.94 E-value=0.00016 Score=74.46 Aligned_cols=147 Identities=19% Similarity=0.304 Sum_probs=109.8
Q ss_pred eeecceEEE-echhhHHHHhcCh---hhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004294 336 ASRETAVVI-MNHISLVEILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (763)
Q Consensus 336 AsR~~g~V~-~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fL 411 (763)
.=|+.+++. ..+..|.++|+|. .+|...+-. .++.++ .+ -.++|-.+..|-| +..||+.++
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~------~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~~ 114 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE------LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVYI 114 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh------heeecC-------CC-CEEEEEEEEcCCC-CCCceEEEE
Confidence 577788887 7999999999995 466666532 122221 12 2678999999999 999999999
Q ss_pred Eeeee-eCCc--eEEEEEEecCCCC-C--CCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhh
Q 004294 412 RYCKQ-HGEG--TWAVVDVSLDNLR-P--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNA 485 (763)
Q Consensus 412 Ryckq-~~~g--~w~VvDvS~d~~~-~--~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~a 485 (763)
|-... ..+| .|+|+..|.+.-. | ..++|+...-+|++|++..++.|+|+++-|.+-- ..+|. -+++.-..
T Consensus 115 r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~ 190 (207)
T cd08910 115 RQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAK 190 (207)
T ss_pred EEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHH
Confidence 64443 3344 6898888875321 1 2789999999999999998889999999998752 24543 25777788
Q ss_pred HHHHHHHHHHHHHHHH
Q 004294 486 FGAKRWVATLDRQCER 501 (763)
Q Consensus 486 fgA~rWlatLqRqcer 501 (763)
.+...|+..|+..|..
T Consensus 191 ~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 191 NGVPNFLKDMQKACQN 206 (207)
T ss_pred HhhHHHHHHHHHHHhc
Confidence 8999999999888853
No 49
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.93 E-value=0.0004 Score=71.39 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=133.9
Q ss_pred HHHHHHhhcCCC--CceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEE-EechhhHHHHhcCh---hhH
Q 004294 287 MEELIRMAQMGE--PLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVV-IMNHISLVEILMDV---NQW 360 (763)
Q Consensus 287 m~El~~la~~~e--plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~~W 360 (763)
++||+.+.+... .-|-...+....-....-|.|.-+ |...-.=|..+++ .+.+..|.+.|+|. .+|
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~--------~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W 79 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPK--------GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKW 79 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccC--------CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhh
Confidence 456666655443 468665432111111222444322 1122356777777 56999999999995 467
Q ss_pred HhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCceEEEEEEecCC-CCCC-CCc
Q 004294 361 STVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDN-LRPS-PAV 438 (763)
Q Consensus 361 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~-~~~~-~~~ 438 (763)
-..|- ..++|..... .| ..++|-.+..|-|+ -.||+.+.|-..+..+|..+|+=.|++. ..|. .++
T Consensus 80 d~~~~-------~~~~le~~~~---~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~v 147 (209)
T cd08870 80 DETVI-------EHETLEEDEK---SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRK 147 (209)
T ss_pred hhhee-------eEEEEEecCC---CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcE
Confidence 66652 3455543211 02 37899999999988 8999999997777779999998888875 3233 689
Q ss_pred eeeecCccceEEec--CCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHH
Q 004294 439 RCRRRPSGCLIQEM--PNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 501 (763)
Q Consensus 439 ~~~~lPSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqcer 501 (763)
|.+..=||++|++. .+|.++|+++=|.+- ...+|. -|++.....|...||..|.+.|..
T Consensus 148 Rv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 148 RVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred EEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999 789999999999863 224554 468888999999999999988853
No 50
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.84 E-value=0.00036 Score=71.81 Aligned_cols=196 Identities=17% Similarity=0.149 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcChh
Q 004294 279 IIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMDVN 358 (763)
Q Consensus 279 ~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~ 358 (763)
+++=+...|.|+++..+. +.-|....+. ++.++|-+. .++ -..-+-|.-|++..+...+.++|.|.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~--------~~i~v~~r~-~~~---~~~~~~k~e~~i~~~~~~~~~vl~d~~ 69 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKES--------EGIRVYYKF-EPD---GSLLSLRMEGEIDGPLFNLLALLNEVE 69 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccC--------CCeEEEEEe-CCC---CCEEEEEEEEEecCChhHeEEEEehhh
Confidence 345566889999988776 5579876542 223333211 011 124677888999999999999999998
Q ss_pred hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE-Eeeeee-CCceEEEEEEecCCCC---
Q 004294 359 QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV-RYCKQH-GEGTWAVVDVSLDNLR--- 433 (763)
Q Consensus 359 ~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fL-Ryckq~-~~g~w~VvDvS~d~~~--- 433 (763)
...+-+|.. ..+..++.++. .-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-.
T Consensus 70 ~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~ 139 (215)
T cd08877 70 LYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFL 139 (215)
T ss_pred hHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccc
Confidence 777777653 34455544431 12577777777777 888999986 556777 8999999999997321
Q ss_pred --------C-C-CCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 434 --------P-S-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 434 --------~-~-~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
+ . .++|.....+|++|+++++|.|+|+++-|++-.-+-||.= |++...--.+...+..|+++|+
T Consensus 140 ~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 140 KLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred cccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2 6799999999999999999999999999966332226653 4555555566677788877765
No 51
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.82 E-value=1.5e-05 Score=82.99 Aligned_cols=58 Identities=22% Similarity=0.536 Sum_probs=53.4
Q ss_pred CCCCCcCChHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 91 KKRYHRHTQHQIQEMEAFFK---ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~---~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
+|+|..|+..-.++|..+|. .+|||+.+.+++||++++++-.||-.||.|+|-+.||-
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 56677899999999999995 58999999999999999999999999999999999983
No 52
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.80 E-value=0.00016 Score=74.32 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhcCCCCceeecCCC-CccccChHHHhhcCCCCCCCCCCCCcceeeecce-EEEechhhHHHHhcChhhH
Q 004294 283 AVAAMEELIRMAQMGEPLWMTSLDG-TAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETA-VVIMNHISLVEILMDVNQW 360 (763)
Q Consensus 283 A~~Am~El~~la~~~eplWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g-~V~~~~~~LVe~lmD~~~W 360 (763)
-+..+.+|++-+....=-|+..... +.|+- .|. . .+...++ -=|.+. +-...+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk----~-~d~~~l~--lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKK----V-GDGHPLR--LWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEe----C-CCCCceE--EEEEEEEecCCCHHHHHHHhhchhhh
Confidence 3677889999998777789874321 11211 110 0 1111111 011111 1223566778999999999
Q ss_pred HhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee-eeCCceEEEEEEecCCCCC--CCC
Q 004294 361 STVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK-QHGEGTWAVVDVSLDNLRP--SPA 437 (763)
Q Consensus 361 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyck-q~~~g~w~VvDvS~d~~~~--~~~ 437 (763)
=+.+ -+.++|+.|..- + ++-|=-+.-| +.+|.|||.+||.-+ .+..|.-+|+.+|++.-.. ..-
T Consensus 79 D~~m----~e~~~Ie~Ld~n-----~---dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g 145 (205)
T cd08907 79 DEDL----LHSQVIEALENN-----T---EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG 145 (205)
T ss_pred hHHH----HhhhhheeecCC-----C---EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC
Confidence 9887 366788887521 1 2222222223 568999999999864 4677899999999986543 234
Q ss_pred ceeeecCccceEEecCCCceEEEEEEeeeecCc
Q 004294 438 VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDR 470 (763)
Q Consensus 438 ~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~ 470 (763)
+|+--+=|||||++++.|.|+||-+-|++..-+
T Consensus 146 VRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 146 VRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred eEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 999999999999999999999999999987544
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.66 E-value=1.1e-05 Score=62.15 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcceeecccchhhh
Q 004294 111 ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ 144 (763)
Q Consensus 111 ~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK 144 (763)
.+|||+..++.+||+++||+..||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999875
No 54
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.63 E-value=0.0013 Score=67.75 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=111.7
Q ss_pred eeecceEE-EechhhHHHHhcChh---hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004294 336 ASRETAVV-IMNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (763)
Q Consensus 336 AsR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fL 411 (763)
.=|..+++ ...+..+++.|+|.+ +|-..+- ..++|.-... . ...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~-------~~~~le~~~~---~-~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAV-------ELEVVDEDPE---T-GSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhhe-------eEEEEEccCC---C-CCEEEEEEEECCCCC-CCccEEEE
Confidence 46665644 789999999999975 5666652 4456664221 0 227889999999996 89999999
Q ss_pred EeeeeeC-CceEEEEEEecCC-CCC--CCCceeeecCccceEEecC---CCceEEEEEEeeeecCc-ccchhhHhhhhch
Q 004294 412 RYCKQHG-EGTWAVVDVSLDN-LRP--SPAVRCRRRPSGCLIQEMP---NGYSKVTWVEHVEVDDR-GVHNLYKQLVSTG 483 (763)
Q Consensus 412 Ryckq~~-~g~w~VvDvS~d~-~~~--~~~~~~~~lPSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~l~rpl~~Sg 483 (763)
|-..+.+ +|.++|+-.|++. ..| ..++|.....+|++|++.. ++.|+|+++-|. |+. .+|.- |++.-
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~~ 188 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSWV 188 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHHH
Confidence 8876665 5778999888874 223 2789999999999999983 677999988885 666 46653 46666
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004294 484 NAFGAKRWVATLDRQCER 501 (763)
Q Consensus 484 ~afgA~rWlatLqRqcer 501 (763)
...+.-.||..|++-|..
T Consensus 189 ~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 189 AMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHhhccHHHHHHHHHHhc
Confidence 778888999999887753
No 55
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.60 E-value=4.1e-05 Score=87.23 Aligned_cols=59 Identities=29% Similarity=0.348 Sum_probs=54.8
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (763)
.+.||.|.+||+.|.+.|..+|+++++|+.+..+.|+.+|+|....|..||-|-|.|.+
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 34578899999999999999999999999999999999999999999999999888753
No 56
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.34 E-value=0.00019 Score=73.83 Aligned_cols=64 Identities=27% Similarity=0.637 Sum_probs=59.0
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
..+.++.|+.++..|+..++..|...++|+...+.+|+..+|++++.+++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 3456788899999999999999999999999999999999999999999999999999998544
No 57
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.31 E-value=0.0074 Score=63.60 Aligned_cols=189 Identities=15% Similarity=0.258 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhcC--CCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEE-echhhHHHHhcChh--
Q 004294 284 VAAMEELIRMAQM--GEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVI-MNHISLVEILMDVN-- 358 (763)
Q Consensus 284 ~~Am~El~~la~~--~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~~-- 358 (763)
.+-.+|.+++|+. ++.-|--..+. ++ .++|-+.. ...|+....=|+.++|. ..+..+.+.|.|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~-------~g-ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r 78 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEE-------GE-MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVR 78 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeC-------Cc-eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChhhH
Confidence 4567789999865 45578654321 00 23332211 11144445678888888 88999999999986
Q ss_pred -hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC-------ceEEEEEEecC
Q 004294 359 -QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE-------GTWAVVDVSLD 430 (763)
Q Consensus 359 -~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~-------g~w~VvDvS~d 430 (763)
+|-..| ...+||..... ...+.|..+-.|=| +..|||.|+|+.++.++ +.|+||..|++
T Consensus 79 ~~Wd~~~-------~~~~vie~l~~-----~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~ 145 (235)
T cd08872 79 MDWETTL-------ENFHVVETLSQ-----DTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVD 145 (235)
T ss_pred HHHHhhh-------heeEEEEecCC-----CCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEeccc
Confidence 455554 34455554332 22567877788889 69999999999999876 78999999986
Q ss_pred CCC--CC-CCceeee---cCccceEEe------c--CCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHH
Q 004294 431 NLR--PS-PAVRCRR---RPSGCLIQE------M--PNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLD 496 (763)
Q Consensus 431 ~~~--~~-~~~~~~~---lPSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLq 496 (763)
.-. +. .++|++. +=.|.+|.+ + .||.|+||++-|++---+--. .+++.....++-.+|..|-
T Consensus 146 h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~----wvvn~~~k~~~P~~l~~~~ 221 (235)
T cd08872 146 HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPA----SVLRAVYKREYPKFLKRFT 221 (235)
T ss_pred CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccH----HHHHHHHHhhchHHHHHHH
Confidence 432 22 6788775 223333332 1 588999999999975444322 3355555666777777775
Q ss_pred HHH
Q 004294 497 RQC 499 (763)
Q Consensus 497 Rqc 499 (763)
-++
T Consensus 222 ~~~ 224 (235)
T cd08872 222 SYV 224 (235)
T ss_pred HHH
Confidence 443
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.23 E-value=0.0033 Score=66.26 Aligned_cols=121 Identities=11% Similarity=0.047 Sum_probs=86.5
Q ss_pred CCcceeeecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEE
Q 004294 331 GFKCEASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYY 410 (763)
Q Consensus 331 g~~~EAsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~f 410 (763)
.|++|+. |...+.+|++.|.|.+...+=.+ .....++|..-.. ...++|..+..|. -+.+|||.+
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id~-----d~~iyy~~~p~Pw-Pvk~RDfV~ 142 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVGE-----DDGIYHTTMPSLT-SEKPNDFVL 142 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeCC-----CcEEEEEEcCCCC-CCCCceEEE
Confidence 4555554 88899999999999764443322 1245566653321 2245666555555 488999999
Q ss_pred EEeeeeeCCc--eEEEEEEecC-CCCC-C-CCceeeecCccceEEecCCCceEEEEEEeee
Q 004294 411 VRYCKQHGEG--TWAVVDVSLD-NLRP-S-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVE 466 (763)
Q Consensus 411 LRyckq~~~g--~w~VvDvS~d-~~~~-~-~~~~~~~lPSGclIq~~~nG~skVtwVeH~e 466 (763)
+|+.++..++ ..+|.=.|+. ...| . .++|++.+=.|++|++.++|.|+||.+-|++
T Consensus 143 ~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 143 LVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 9999984433 4777777765 3333 2 7899999999999999999999999999986
No 59
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.76 E-value=0.045 Score=56.69 Aligned_cols=176 Identities=18% Similarity=0.315 Sum_probs=101.5
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeecc-CChhhHhhhhcccCccchhhhccCCCceeEEeecc
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (763)
..++|..... .++|+|.+++..+ +.+...++...++ +||+.+|++|.|...|.+||-.... .+.+.++
T Consensus 21 ~~~~W~~~~~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~- 89 (222)
T cd08871 21 STDGWKLKYN--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL- 89 (222)
T ss_pred CCCCcEEEEc--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc-
Confidence 3468997643 4679999988632 3344455666665 9999999999999999999964321 3344444
Q ss_pred cCCCCCceeEEEEeeeccCCCCCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCCCCCCc--cccCCccEEccCC
Q 004294 625 NGRDTGNCVSLLRVNCLQSANSSQSNMLILQESCTDPTASFVIY-APVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDG 701 (763)
Q Consensus 625 ~g~~~gn~vSll~~~~~~~~~~~~~~~liLQes~~D~sgs~vVy-APvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 701 (763)
+.++.|.-...+. ...-...+.++++....+. |+++|+ ..|+-+.+ ...+.+| ..+.+||.|-|.+
T Consensus 90 ---d~~~~i~y~~~~~--P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~ 158 (222)
T cd08871 90 ---NPNNDIGYYSAKC--PKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG 158 (222)
T ss_pred ---CCCCEEEEEEeEC--CCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC
Confidence 3445554443331 1112334566666555444 776654 34443211 0112222 3567888888843
Q ss_pred CCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004294 702 TSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 759 (763)
Q Consensus 702 ~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 759 (763)
.++|.+|.-+|+=... .|..=.+. .+....-.++++++.|+.
T Consensus 159 ------------~~~t~vt~~~~~Dp~G~IP~~lvN~----~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ------------PKGCTLTYVTQNDPKGSLPKWVVNK----ATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ------------CCCEEEEEEEecCCCCCcCHHHHHH----HHHHHhHHHHHHHHHHHH
Confidence 1468888887776553 33321111 112334478888888764
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.69 E-value=0.059 Score=55.11 Aligned_cols=173 Identities=21% Similarity=0.264 Sum_probs=103.1
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeeccc
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIAN 625 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~ 625 (763)
..++|.... ..++|+|.+|+..++ . .+..-++..-++.+|+.||+.|.| .|.+||-..- ..+.+-+|
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~~--~---~l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i-- 83 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDDG--H---PLRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL-- 83 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCCC--C---cEEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe--
Confidence 467898653 356999999997431 1 234457788889999999999988 6899995331 13344444
Q ss_pred CCCCCceeEEEEeeeccCCCCCCC-ceEEEEecccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--ccccCCccEEcc
Q 004294 626 GRDTGNCVSLLRVNCLQSANSSQS-NMLILQESCTD-PTASFVIYA-PVDIV-AMNVVLNGGDPDY--VALLPSGFAILP 699 (763)
Q Consensus 626 g~~~gn~vSll~~~~~~~~~~~~~-~~liLQes~~D-~sgs~vVyA-PvD~~-~m~~vm~G~d~~~--v~lLPSGF~I~P 699 (763)
+..+.|--...+ ...+..+ ++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|
T Consensus 84 --d~~~~i~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p 151 (197)
T cd08869 84 --DEDTEVYQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEP 151 (197)
T ss_pred --cCCcEEEEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEE
Confidence 333443322222 2222233 45555433333 446665433 33321 10 0122 357889999998
Q ss_pred CCCCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhcc
Q 004294 700 DGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLSC 760 (763)
Q Consensus 700 dg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~~ 760 (763)
.|. ++|.+|--.|+=... .|. .+ +-..+++++..|++|++.++|
T Consensus 152 ~~~------------~~t~vty~~~~Dp~G~iP~---wl--~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 152 CGS------------GKSRVTHICRVDLRGRSPE---WY--NKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred CCC------------CCeEEEEEEEECCCCCCCc---ee--ecchHhHHHHHHHHHHhhccC
Confidence 432 468888776665443 331 12 555679999999999999876
No 61
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.68 E-value=0.015 Score=61.46 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=89.3
Q ss_pred eeecceEEEechhhHHHHhcChh---hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCC-CCccCceeEEE
Q 004294 336 ASRETAVVIMNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPS-PLVPTRESYYV 411 (763)
Q Consensus 336 AsR~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~S-pLvp~Re~~fL 411 (763)
+-|.-..|...+..|.+.|.|.+ +|..-| ...++|..-...+ . +|...-.|- |+ ..|||-++
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~-------~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~ 144 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF-------LSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVL 144 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhh-------ceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEE
Confidence 33444578899999999999976 455555 3445555433222 1 455444443 44 89999998
Q ss_pred EeeeeeC-Cce-EEEEEEecCC-CCCC--CCceeeecCccceEEecCCCceEEEEEEeeeecCcccch
Q 004294 412 RYCKQHG-EGT-WAVVDVSLDN-LRPS--PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHN 474 (763)
Q Consensus 412 Ryckq~~-~g~-w~VvDvS~d~-~~~~--~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 474 (763)
|=-.+.. +|. ++|.=.|+.. ..|. .++|++.+=+|++|++.++|.|+||.+-|++ +..+|.
T Consensus 145 ~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~ 210 (236)
T cd08914 145 VSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPY 210 (236)
T ss_pred EEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchh
Confidence 7776666 885 9898888876 4443 7899999999999999999999999999995 455543
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.58 E-value=0.026 Score=59.80 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=82.6
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEEeeee
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVRYCKQ 416 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~Sp--Lvp~Re~~fLRyckq 416 (763)
.-++|...+..|.+.|.|.+...+=.+.+ ...++|...... . .+|-..- +.+ -+..|||-.++...+
T Consensus 85 ~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~----~e~~vIe~id~~----~--~vY~v~~-~p~~~pvs~RDfV~~~s~~~ 153 (240)
T cd08913 85 VEMVVHVDAAQAFLLLSDLRRRPEWDKHY----RSCELVQQVDED----D--AIYHVTS-PSLSGHGKPQDFVILASRRK 153 (240)
T ss_pred EEEEEcCCHHHHHHHHhChhhhhhhHhhc----cEEEEEEecCCC----c--EEEEEec-CCCCCCCCCCeEEEEEEEEe
Confidence 33688999999999999986544333322 345566544331 1 1232221 222 588999999998866
Q ss_pred eCC-c-eEEEEEEec--CCCCCC-CCceeeecCccceEEecCCCceEEEEEEeeeecCcccchh
Q 004294 417 HGE-G-TWAVVDVSL--DNLRPS-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNL 475 (763)
Q Consensus 417 ~~~-g-~w~VvDvS~--d~~~~~-~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 475 (763)
.++ | .++|+=.|+ ...-+. .++|.+.+..|++|++.++|.|+||++-|++ +..+|..
T Consensus 154 ~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred ccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 544 4 455544443 443222 7899999999999999999999999999988 3355544
No 63
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.50 E-value=0.0028 Score=78.60 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=57.4
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+++.|++++..|+..+...|....+|...+.+.|...+++..+.|++||||-|.|.|+..+
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 4778899999999999999999999999999999999999999999999999999998654
No 64
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=95.61 E-value=0.32 Score=50.45 Aligned_cols=174 Identities=23% Similarity=0.312 Sum_probs=101.5
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeecc-CChhhHhhhhcccCccchhhh-ccCCCceeEEee
Q 004294 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDI-LSNGGVVQEMAH 622 (763)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdi-ls~G~~vqe~~~ 622 (763)
....+|.... ..++|.|.++|..+ |.|.-++.|. +=+| +|.+.|+|.|+| |..||. |... ..|..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d--~~~l~lwk~s---~ei~~~p~~vl~rvL~d---R~~WD~~m~e~---~~Ie~ 90 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD--GHPLRLWKVS---TEVEAPPSVVLQRVLRE---RHLWDEDLLHS---QVIEA 90 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC--CCceEEEEEE---EEecCCCHHHHHHHhhc---hhhhhHHHHhh---hhhee
Confidence 4567898763 36789999999754 5565555544 4457 999999999999 999994 3322 23333
Q ss_pred cccCCCCCceeEEEEeeeccCCCCCCCceEEEEecc-cC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEcc
Q 004294 623 IANGRDTGNCVSLLRVNCLQSANSSQSNMLILQESC-TD-PTASFVIYAP-VDIVAMNVVLNGGDPDYVALLPSGFAILP 699 (763)
Q Consensus 623 ia~g~~~gn~vSll~~~~~~~~~~~~~~~liLQes~-~D-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~P 699 (763)
| ++.|-|-=.-.+ ...+-.+--|++|-++ +| +.|++++.+- |+=+.-. +.|| --...|=|||-|=|
T Consensus 91 L----d~n~dI~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep 159 (205)
T cd08907 91 L----ENNTEVYHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEP 159 (205)
T ss_pred e----cCCCEEEEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEE
Confidence 3 344443333333 2334445567777776 45 5677666552 2221111 1122 12234557777777
Q ss_pred CCCCCCCCCCCCCCCCCceeEEeeehhccCCcccccccchhhhh-hhhhhHHHHHHHHhhc
Q 004294 700 DGTSLHGANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATV-NNLIACTVERIKASLS 759 (763)
Q Consensus 700 dg~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv-~~li~~tv~~Ik~al~ 759 (763)
.| .|+|.||=-.|+=... ++. .=+..| ..|++.-+.+|++.+.
T Consensus 160 ~g------------~g~s~ltyi~rvD~rG----~~P-~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 160 CG------------MGRSRLTHICRADLRG----RSP-DWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred CC------------CCCeEEEEEEEeCCCC----CCc-HHHHHhHHHHHHHHHHHHHhhcc
Confidence 44 2578888666654432 221 112333 5677778999998764
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.48 E-value=0.21 Score=51.70 Aligned_cols=151 Identities=15% Similarity=0.204 Sum_probs=91.9
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecccC
Q 004294 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANG 626 (763)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g 626 (763)
.++|.... .++++.|.++++.+..| =-.++.--+|.+|+.||+||.|..+|.+||-.+.. .+.+-+|
T Consensus 21 ~~gWk~~k--~~~~~~v~~k~~~~~~g------kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I--- 87 (204)
T cd08904 21 TSGWKVVK--TSKKITVSWKPSRKYHG------NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI--- 87 (204)
T ss_pred ccCCeEEe--cCCceEEEEEEcCCCCc------eEEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe---
Confidence 48998773 44889999998865444 22355566799999999999999999999963322 3344444
Q ss_pred CCCCceeEEEEeeeccCCC-CCCCceEEEEecc-cCCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEEccCC
Q 004294 627 RDTGNCVSLLRVNCLQSAN-SSQSNMLILQESC-TDPTASFVI-YAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDG 701 (763)
Q Consensus 627 ~~~gn~vSll~~~~~~~~~-~~~~~~liLQes~-~D~sgs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 701 (763)
+...+|...+.... +.+ -+..+.+.+|-.. .+. +.+++ +.-|+-+.+- -.+.+| -..|+||.|.|..
T Consensus 88 -d~~T~I~~~~~~~~-~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 -DSDTFICHTITQSF-AMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred -CCCcEEEEEecccc-cCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECC
Confidence 55566655443210 011 1223566666532 233 33443 4445444221 123444 3789999999933
Q ss_pred CCCCCCCCCCCCCCCceeEEeeehhcc
Q 004294 702 TSLHGANIGEAASGGSLLTVAFQILVD 728 (763)
Q Consensus 702 ~~~~~~~~~~~~~~gsllTvaFQil~~ 728 (763)
.. .++|.||.-+|+=..
T Consensus 160 ~~----------p~~t~l~~~~~~Dlk 176 (204)
T cd08904 160 EN----------PAYSKLVMFVQPELR 176 (204)
T ss_pred CC----------CCceEEEEEEEeCCC
Confidence 21 246999999995444
No 66
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.23 E-value=0.025 Score=62.37 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=51.9
Q ss_pred CCCCCCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
++|++..+......+|+....+ .+||+..++..|++++||+..||..||-|.|-|..+-...
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 4566678999999999986433 5799999999999999999999999999999887765443
No 67
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.18 E-value=0.19 Score=52.13 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecc
Q 004294 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (763)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (763)
-...+|. +. ...++|+|-++.. +|.+.|. ++ .+ -+++||+.|+++|.|...|.+||..... ++ |.
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~---~~~~~~~-~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~--~~----vl 83 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVF---NGTYHGF-LG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKT--AR----IH 83 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecC---CCCcceE-EE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhh--ee----ee
Confidence 4567994 43 3458899999864 3344444 43 33 3499999999999999999999964422 12 22
Q ss_pred cCCCCCceeEEEEeeeccCC--CC-CCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCC-C--CccccCCccEE
Q 004294 625 NGRDTGNCVSLLRVNCLQSA--NS-SQSNMLILQESCTDPTASFVI-YAPVDIVAMNVVLNGGDP-D--YVALLPSGFAI 697 (763)
Q Consensus 625 ~g~~~gn~vSll~~~~~~~~--~~-~~~~~liLQes~~D~sgs~vV-yAPvD~~~m~~vm~G~d~-~--~v~lLPSGF~I 697 (763)
+-.+...+ +.+... ... .. ...++.+|+ ++.+.-+..+| ---|+-+.+- ..+ . -+..+++||.|
T Consensus 84 ~~~~~d~~--i~y~~~-~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~P-----~~~~~~VR~~~~~~gw~i 154 (205)
T cd08874 84 KTFTEDIC--LVYLVH-ETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSMP-----EPGRSLVRGEILPSAWIL 154 (205)
T ss_pred eecCCCeE--EEEEEe-cCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccCC-----CCCCCeEEeeeEeeeEEE
Confidence 22233333 455431 011 11 334666666 54444444333 2112211000 001 1 23467888888
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEEeeehhcc
Q 004294 698 LPDGTSLHGANIGEAASGGSLLTVAFQILVD 728 (763)
Q Consensus 698 ~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~ 728 (763)
-|.-. .+.+.|.||--+|+=-.
T Consensus 155 ~P~~~---------~g~~~t~vty~~q~DPg 176 (205)
T cd08874 155 EPVTV---------EGNQYTRVIYIAQVALC 176 (205)
T ss_pred EECcc---------CCCCcEEEEEEEEECCC
Confidence 88310 01246778777776554
No 68
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.53 E-value=2 Score=44.02 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=94.1
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhh-cccCccchhhhccCCCceeEEeeccc
Q 004294 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFL-RDENTRSEWDILSNGGVVQEMAHIAN 625 (763)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rd~~~R~eWdils~G~~vqe~~~ia~ 625 (763)
..+|.... +..++|.|.+|... | .|-+ .++...+++||..||++| .|...|.+||-.+.. .+.+-++
T Consensus 23 ~~~W~l~~-~~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~-- 90 (208)
T cd08868 23 DPGWKLEK-NTTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI-- 90 (208)
T ss_pred CCCceEEE-ecCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe--
Confidence 34898664 33348999999863 3 2333 444556799999999865 588999999965432 3444444
Q ss_pred CCCCCceeEEEEeeeccCCCC-CCCceEEEEecccCCCCcEEE-EeecchhhhhhhhcCCCCCC--ccccCCccEEccCC
Q 004294 626 GRDTGNCVSLLRVNCLQSANS-SQSNMLILQESCTDPTASFVI-YAPVDIVAMNVVLNGGDPDY--VALLPSGFAILPDG 701 (763)
Q Consensus 626 g~~~gn~vSll~~~~~~~~~~-~~~~~liLQes~~D~sgs~vV-yAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg 701 (763)
+....|.- ...+...... ...+.+.++-..-+. +.++| ...|+-+.+ ...+.+ +..+++||.|-|.+
T Consensus 91 --d~~~~i~y-~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 --DDNTDISY-QVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred --cCCcEEEE-EEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 22333322 1221000011 233555555443333 55544 444443321 112333 45788999999854
Q ss_pred CCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004294 702 TSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 759 (763)
Q Consensus 702 ~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 759 (763)
.+ .++|.+|.-+++=... .|.--.+. + +-..+-.|+..+|.++.
T Consensus 162 ~~----------~~~t~v~~~~~~Dp~G~iP~~lvN~--~--~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 162 NN----------PNKCNFTWLLNTDLKGWLPQYLVDQ--A--LASVLLDFMKHLRKRIA 206 (208)
T ss_pred CC----------CCceEEEEEEEECCCCCCcceeeeh--h--hHHHHHHHHHHHHHHHh
Confidence 31 1468888555544332 23221111 1 12233477778877764
No 69
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.35 E-value=1.8 Score=44.62 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=77.3
Q ss_pred HHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccC
Q 004294 534 MVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSN 613 (763)
Q Consensus 534 M~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~ 613 (763)
++..|...+.. .++|.... ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+.
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~ 79 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCI 79 (215)
T ss_pred HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccce
Confidence 34556666655 67899774 34799999999743 4489999999999999999999999999999995431
Q ss_pred CCceeEEeecccCCCCCceeEEEEeeeccCCC-CCCCceEEEEec--ccCCCCcEEEEe
Q 004294 614 GGVVQEMAHIANGRDTGNCVSLLRVNCLQSAN-SSQSNMLILQES--CTDPTASFVIYA 669 (763)
Q Consensus 614 G~~vqe~~~ia~g~~~gn~vSll~~~~~~~~~-~~~~~~liLQes--~~D~sgs~vVyA 669 (763)
....+..+ +..+.|...++. ..= -+..++++.... ..|..|+++|+.
T Consensus 80 --~~~~l~~~----~~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 80 --RSKKVKQL----GRADKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred --eeEEEeec----CCceEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 12333333 344667766654 211 122345444333 244677776655
No 70
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.23 E-value=0.016 Score=47.99 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchh
Q 004294 101 QIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (763)
Q Consensus 101 Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRR 142 (763)
-++.|++.|...+++.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467799999999999999999999999999999999996554
No 71
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.14 E-value=1.7 Score=42.59 Aligned_cols=148 Identities=19% Similarity=0.292 Sum_probs=90.2
Q ss_pred CCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecccCC
Q 004294 548 HTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGR 627 (763)
Q Consensus 548 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~ 627 (763)
++|..+... ++|+|..++..+. .+...++..-++.|+..|+++|.|...|.+||-.... ...+..+..
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~~------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~--~~vl~~~~~-- 82 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYEDS------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEE--FEVIEEIDE-- 82 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCCC------CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceE--EEEEEEeCC--
Confidence 589987433 4899988876431 2345556677799999999999999999999943322 233333322
Q ss_pred CCCceeEEEEeeeccCCC-CCCCceEEEEecccCCCC-cEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEccCCCC
Q 004294 628 DTGNCVSLLRVNCLQSAN-SSQSNMLILQESCTDPTA-SFVIYAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTS 703 (763)
Q Consensus 628 ~~gn~vSll~~~~~~~~~-~~~~~~liLQes~~D~sg-s~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~ 703 (763)
+..|...... ..- ....+++++.....+..| -+++..+||.+.. ...+.+| .++++||.|-|.+
T Consensus 83 --~~~i~~~~~~---~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~-- 150 (193)
T cd00177 83 --HTDIIYYKTK---PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD-- 150 (193)
T ss_pred --CeEEEEEEee---CCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC--
Confidence 2343333332 221 233467777776656544 5667777776411 1112333 3668899988851
Q ss_pred CCCCCCCCCCCCCceeEEeeehhccC
Q 004294 704 LHGANIGEAASGGSLLTVAFQILVDS 729 (763)
Q Consensus 704 ~~~~~~~~~~~~gsllTvaFQil~~~ 729 (763)
.++|.+|.-+|+=...
T Consensus 151 ----------~~~~~vt~~~~~D~~g 166 (193)
T cd00177 151 ----------PGKTKVTYVLQVDPKG 166 (193)
T ss_pred ----------CCCEEEEEEEeeCCCC
Confidence 2468888887775543
No 72
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.03 E-value=1.6 Score=45.17 Aligned_cols=179 Identities=16% Similarity=0.143 Sum_probs=94.9
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhccc--CccchhhhccCCCceeEEeec
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDE--NTRSEWDILSNGGVVQEMAHI 623 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~--~~R~eWdils~G~~vqe~~~i 623 (763)
..++|.... ..++|+|.+|++...+|.. .++-.-+|++++.||+||.|. ..|.+||..+.. ++.+-+|
T Consensus 20 ~~~~W~~~~--~~~~i~v~~~~~~~~~~~~------~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~i 89 (208)
T cd08903 20 DESGWKTCR--RTNEVAVSWRPSAEFAGNL------YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEAI 89 (208)
T ss_pred cccCCEEEE--cCCCEEEEeeecCCCCCcE------EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEEe
Confidence 567898775 3469999999886545422 445555699999999999854 478999965432 3344444
Q ss_pred ccCCCCCceeEEEEeeeccC-CC-CCCCceEEEEecccCCCCcEEEEee-cchhhhhhhhcCCCCCCcc--ccCCccEEc
Q 004294 624 ANGRDTGNCVSLLRVNCLQS-AN-SSQSNMLILQESCTDPTASFVIYAP-VDIVAMNVVLNGGDPDYVA--LLPSGFAIL 698 (763)
Q Consensus 624 a~g~~~gn~vSll~~~~~~~-~~-~~~~~~liLQes~~D~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~--lLPSGF~I~ 698 (763)
+....| .+...-.. .+ -+..++++++-.-.+..|.+++... ++-+.+ ...+.+|- .-|+|+.+.
T Consensus 90 ----d~~~~i--~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~ 158 (208)
T cd08903 90 ----SDDVSV--CRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCE 158 (208)
T ss_pred ----cCCEEE--EEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEE
Confidence 233333 33320000 01 2334566666554555666665542 222110 01233332 455777776
Q ss_pred cCCCCCCCCCCCCCCCCCceeEEeeehhccCCcccccccchhhhh-hhhhhHHHHHHHHhhc
Q 004294 699 PDGTSLHGANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATV-NNLIACTVERIKASLS 759 (763)
Q Consensus 699 Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv-~~li~~tv~~Ik~al~ 759 (763)
|-.. ..++|.+|.-+|+=... .+...-|.++ ...+-.|.+.+|.+|+
T Consensus 159 ~~~~----------~~~~t~v~~~~~~DpkG----~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 159 PVPG----------EPDKTQLVSFFQTDLSG----YLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred ECCC----------CCCceEEEEEEEeccCC----CcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 6110 12457777666654332 2221112111 1333466777777664
No 73
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=93.86 E-value=1.4 Score=44.53 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=87.3
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhh-HhhhhcccCccchhhhccCCCceeEEeeccc
Q 004294 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKR-VFDFLRDENTRSEWDILSNGGVVQEMAHIAN 625 (763)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~-vf~FLrd~~~R~eWdils~G~~vqe~~~ia~ 625 (763)
.++|..... +.+++.+-.+...+ + ..+-..++...++.+++. +.++|.|.+.|.+||-..-. ++.+-.+.
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~~--~---~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~- 88 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSPG--R---SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID- 88 (206)
T ss_pred CCccEEccc-cCCcceEEEEccCC--C---CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC-
Confidence 467987753 23444444444321 1 135778888899988886 66899999999999954422 34444442
Q ss_pred CCCCCceeEEEEeeeccCCCCCCCceEEEEecccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCccEEccCCC
Q 004294 626 GRDTGNCVSLLRVNCLQSANSSQSNMLILQESCTDPTASFVIYA-PVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGT 702 (763)
Q Consensus 626 g~~~gn~vSll~~~~~~~~~~~~~~~liLQes~~D~sgs~vVyA-PvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~ 702 (763)
.++.|... +.++.-.--...+.+++.-...|..|+++|.+ .++-+.. ...+.+| .++++||.|-|.+.
T Consensus 89 ---~~~~i~~~-~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~~ 159 (206)
T smart00234 89 ---NGTVIYHY-VSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLGN 159 (206)
T ss_pred ---CCCeEEEE-EEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECCC
Confidence 23443332 22221101122466777666666777766554 5554421 1123333 58999999999432
Q ss_pred CCCCCCCCCCCCCCceeEEeeehhcc
Q 004294 703 SLHGANIGEAASGGSLLTVAFQILVD 728 (763)
Q Consensus 703 ~~~~~~~~~~~~~gsllTvaFQil~~ 728 (763)
+.|.+|.-.|+=..
T Consensus 160 ------------~~t~vt~~~~~D~~ 173 (206)
T smart00234 160 ------------GPSKVTWVSHADLK 173 (206)
T ss_pred ------------CCeEEEEEEEEecC
Confidence 23677766665443
No 74
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.07 E-value=3.9 Score=41.02 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=45.5
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhh
Q 004294 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
|.+.+|..... .++|+|.+++..+ +.+..-.++..++.||+.+|+++.|..+|.+||-
T Consensus 14 ~~~~~W~~~~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~ 71 (195)
T cd08876 14 APDGDWQLVKD--KDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMP 71 (195)
T ss_pred CCCCCCEEEec--CCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHh
Confidence 44555987753 4799999988632 2245557777899999999999999999999994
No 75
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.06 E-value=5.2 Score=41.67 Aligned_cols=173 Identities=23% Similarity=0.305 Sum_probs=94.3
Q ss_pred CCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhh-ccCCCceeEEeecccC
Q 004294 548 HTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDI-LSNGGVVQEMAHIANG 626 (763)
Q Consensus 548 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi-ls~G~~vqe~~~ia~g 626 (763)
.+|..+.. .+++.+..+|.. +|.|.-+ -++++=+|.+|..|+..+-+ .|.+||. +..+. .+-+|
T Consensus 27 k~w~~~~~--~~~~e~~ykK~~--d~~~lk~---~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~---~ie~l--- 91 (205)
T cd08909 27 KGWISCSS--SDNTELAYKKVG--DGNPLRL---WKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWK---VVETL--- 91 (205)
T ss_pred cCCcccCC--cCCeEEEEecCC--CCCceEE---EEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeE---EEEEe---
Confidence 46776633 577888888864 3444323 34577789777777555544 6999994 23222 23232
Q ss_pred CCCCceeEEEEeeeccCCCCCCC-ceEEEEecccC-CCCcEE-EEeecchhhhhhhhcCCCCCCccccCCccEEccCCCC
Q 004294 627 RDTGNCVSLLRVNCLQSANSSQS-NMLILQESCTD-PTASFV-IYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTS 703 (763)
Q Consensus 627 ~~~gn~vSll~~~~~~~~~~~~~-~~liLQes~~D-~sgs~v-VyAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~ 703 (763)
+..+.|=-...+. ..+-.+ +..+++--.+| ..|+++ ++..|+-+.-.. .|+- -+.++=+||.|-|-|.
T Consensus 92 -d~~tdi~~y~~~~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~~- 162 (205)
T cd08909 92 -DKQTEVYQYVLNC---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCGS- 162 (205)
T ss_pred -CCCcEEEEEEeec---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECCC-
Confidence 2224433344442 222223 44555443445 578754 344455432111 1222 3456668888888332
Q ss_pred CCCCCCCCCCCCCceeEEeeehhccCCcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004294 704 LHGANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLS 759 (763)
Q Consensus 704 ~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 759 (763)
|+|.||---|+= |.-.+.-=-+..++.|++.-+.||++.++
T Consensus 163 -----------g~trvt~i~~vD----pkG~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 -----------GKSRLTHICRVD----LKGHSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred -----------CCEEEEEEEEec----CCCCChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 467776544443 32223222355567888899999998765
No 76
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=92.01 E-value=1.1 Score=43.23 Aligned_cols=86 Identities=24% Similarity=0.347 Sum_probs=50.3
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHH
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSREL-GLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~L-gL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~ 173 (763)
.+|+.+++..+- -.+|=+.| |++...|-.|=|.||+-.-|--.......--.+.+.|..++..|..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877661 22334444 8888889999999986543322222222222233445555555544
Q ss_pred HhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHH
Q 004294 174 ALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRIS 214 (763)
Q Consensus 174 a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~ 214 (763)
+.++|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777776443
No 77
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=91.85 E-value=7.2 Score=39.90 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcc--cCcc
Q 004294 528 LKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRD--ENTR 605 (763)
Q Consensus 528 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd--~~~R 605 (763)
=++.|.|..-|.. .++|.... ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..|
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~r 73 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGLR 73 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCcccc
Confidence 3455555555543 27899774 3478999998643211 2 2246666779999999999999 8999
Q ss_pred chhhhccCCCceeEEeecccCCCCCceeEEEEeeeccCCC-CCCCceEEEEecccCCCCcEEEE-eecchhhhhhhhcCC
Q 004294 606 SEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQSAN-SSQSNMLILQESCTDPTASFVIY-APVDIVAMNVVLNGG 683 (763)
Q Consensus 606 ~eWdils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~~~~-~~~~~~liLQes~~D~sgs~vVy-APvD~~~m~~vm~G~ 683 (763)
.+||-... ..+.+.+| ++.+.|...... ..+.. -...+...+|-......|++++. .-|+-+.+ ..
T Consensus 74 ~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p-~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 74 LKWDKSLK--HYEVLEKI----SEDLCVGRTITP-SAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred cccccccc--ceEEEEEe----CCCeEEEEEEcc-ccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 99995432 34555565 334443322111 00001 12235666664322333556544 33433321 11
Q ss_pred CCCCc--cccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhcc
Q 004294 684 DPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVD 728 (763)
Q Consensus 684 d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~ 728 (763)
.+.+| ..+++||.|-|.... .++|.+|--+|+=..
T Consensus 142 ~~~~VR~~~~~~g~~i~p~~~~----------~~~t~~~~~~~~Dpk 178 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPLKGS----------PDKSFLVLYVQTDLR 178 (206)
T ss_pred CCCcEEEEeecCEEEEEECCCC----------CCceEEEEEEEeccC
Confidence 23333 467888888884321 135777766665544
No 78
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=91.69 E-value=4.5 Score=42.10 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=96.7
Q ss_pred CcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecccCCC
Q 004294 549 TWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGRD 628 (763)
Q Consensus 549 ~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~~ 628 (763)
+|..+. ..+.+.+..+|.. +|.| +.--+.++-+|.+|..|...|-|+ |.+||...- .++.+..| +
T Consensus 28 ~w~~~~--~~~~~el~~~k~~--~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l----d 92 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS--EGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL----D 92 (204)
T ss_pred CCcccC--CCCcEEEEEeccC--CCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----C
Confidence 676663 3577889999863 4444 466677778898888888777775 999995321 13344443 3
Q ss_pred CCceeEEEEeeeccCCCCCCC-ceEEEEecccC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCccEEccCCCCCC
Q 004294 629 TGNCVSLLRVNCLQSANSSQS-NMLILQESCTD-PTASFVIYAP-VDIVAMNVVLNGGDPDYVALLPSGFAILPDGTSLH 705 (763)
Q Consensus 629 ~gn~vSll~~~~~~~~~~~~~-~~liLQes~~D-~sgs~vVyAP-vD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~ 705 (763)
+.+.|-=...+ ..-+-.+ ++.+++-..+| .-|++++... |+-+..- .++ --+..+-+|+.|-|.
T Consensus 93 ~~~~I~Yy~~~---~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~----- 159 (204)
T cd08908 93 SQTEIYQYVQN---SMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPC----- 159 (204)
T ss_pred CCceEEEEEcc---CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEEC-----
Confidence 33332222222 2222333 45555443343 4577777765 5433211 000 012233444444442
Q ss_pred CCCCCCCCCCCceeEEeeehhccCCcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004294 706 GANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLS 759 (763)
Q Consensus 706 ~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 759 (763)
+.|+|-||--.|+= |...+..=-+-..+.|++.-+.||++.+.
T Consensus 160 -------g~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 160 -------GSGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred -------CCCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 12578888655543 44444434466778899999999999874
No 79
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=91.50 E-value=1.8 Score=46.04 Aligned_cols=66 Identities=26% Similarity=0.433 Sum_probs=48.7
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeec
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (763)
..++|..- ...++|+|-++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46789755 3457999999873 2345555555589999999999999999999996 33445666665
No 80
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=91.39 E-value=1.8 Score=45.66 Aligned_cols=60 Identities=30% Similarity=0.333 Sum_probs=35.4
Q ss_pred cchhhhhHHHhHH--HHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhH
Q 004294 139 QNKRTQMKTQHER--HENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDR 212 (763)
Q Consensus 139 QNRRaK~Kr~~~r--~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r 212 (763)
||-|-|.|-+..+ .+...|..||++|+.||+.|++.. ..+-.+.+.|..+...|++||..
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n--------------~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN--------------ESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHh
Confidence 5555555544433 444567788888888888888765 22223445555555555555543
No 81
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.33 E-value=2.5 Score=45.00 Aligned_cols=104 Identities=15% Similarity=0.284 Sum_probs=65.1
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecc
Q 004294 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (763)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (763)
...++|..- ...++|+|-++. | +-+++-+.-+-+++|++.+|++|.|...|.+||...- .++.+..+
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~-----~---s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~--e~~vI~ql- 119 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLE-----E---HDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFL--SCEVIDWV- 119 (236)
T ss_pred cccCCCEEE--EccCCEEEEEec-----C---CCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhc--eEEEEEEe-
Confidence 346899755 345789999984 1 1257888888889999999999999999999995331 24444444
Q ss_pred cCCCCCceeEEEEeeeccCCCCCCCceEEEEeccc--CCCCc-EEE
Q 004294 625 NGRDTGNCVSLLRVNCLQSANSSQSNMLILQESCT--DPTAS-FVI 667 (763)
Q Consensus 625 ~g~~~gn~vSll~~~~~~~~~~~~~~~liLQes~~--D~sgs-~vV 667 (763)
++.+. +..+... .-.+-++.=+|++-+.. +..|. ++|
T Consensus 120 ---d~~~~--vY~~~~p-Pw~Pvk~RD~V~~~s~~~~~~dg~~~~I 159 (236)
T cd08914 120 ---SEDDQ--IYHITCP-IVNNDKPKDLVVLVSRRKPLKDGNTYVV 159 (236)
T ss_pred ---CCCcC--EEEEecC-CCCCCCCceEEEEEEEEecCCCCCEEEE
Confidence 23333 4444421 11133444445544542 33665 555
No 82
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.91 E-value=0.94 Score=42.88 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=27.7
Q ss_pred CCcCChHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 004294 94 YHRHTQHQIQ-EMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (763)
Q Consensus 94 RtrfT~eQl~-~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQ 139 (763)
|.+||.++.. .+...+... ....++|+++|+++.++..|.+
T Consensus 10 rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 10 RRRRTTQEKIAIVQQSFEPG-----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 3457777654 334444422 2456789999999999999954
No 83
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=90.29 E-value=13 Score=38.50 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhh-hhcccCccchhhhccCCCceeEEeeccc
Q 004294 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFD-FLRDENTRSEWDILSNGGVVQEMAHIAN 625 (763)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~-FLrd~~~R~eWdils~G~~vqe~~~ia~ 625 (763)
..+|..-. ...++|+|-+++..+ . | .+-+.-+-+++|++.||+ .|.|...|.+||.-. ..++.+.+|
T Consensus 24 ~~~W~l~~-~~~~gi~V~s~~~~~-~----~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~--~~~~vi~~~-- 91 (209)
T cd08906 24 EENWKFEK-NNDNGDTVYTLEVPF-H----G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV--SACQVLQRV-- 91 (209)
T ss_pred ccCCEEEE-ecCCCCEEEEeccCC-C----C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccc--hhhhheeec--
Confidence 35898542 235789999976532 1 2 344677777999999985 789999999999432 123444444
Q ss_pred CCCCCceeEEEEeeeccCC-CC-CCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEccCC
Q 004294 626 GRDTGNCVSLLRVNCLQSA-NS-SQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDG 701 (763)
Q Consensus 626 g~~~gn~vSll~~~~~~~~-~~-~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 701 (763)
++.+.|. ..+.. ... ++ ...++.+++-..-+..+..++...++.+.+ ...+.+| ...++||.|.|-.
T Consensus 92 --~~~~~i~-Y~v~~-p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~~~ 162 (209)
T cd08906 92 --DDNTLVS-YDVAA-GAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLKSA 162 (209)
T ss_pred --cCCcEEE-EEEcc-ccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEECC
Confidence 3334433 23321 111 12 334666665545555554445455544321 1234444 3589999999821
Q ss_pred CCCCCCCCCCCCCCCceeEEeeehh
Q 004294 702 TSLHGANIGEAASGGSLLTVAFQIL 726 (763)
Q Consensus 702 ~~~~~~~~~~~~~~gsllTvaFQil 726 (763)
. +.++|.+|--.|+=
T Consensus 163 ~----------~~~~t~vt~~~~~D 177 (209)
T cd08906 163 S----------NPSVCTFIWILNTD 177 (209)
T ss_pred C----------CCCceEEEEEEecC
Confidence 1 11357776555553
No 84
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.64 E-value=0.88 Score=36.27 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=28.3
Q ss_pred hHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 149 HERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
|.+.++..|++.++.|+++|+. |..||..|+.|+..+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~----------------------------L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDS----------------------------LKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 4566777888888888887776 66677777777776655
No 85
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.45 E-value=6.2 Score=37.02 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=74.2
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCce-eEEEEeeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRE-SYYVRYCKQ 416 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re-~~fLRyckq 416 (763)
|++-.|..++..+-++|.|.+.|.+-+|.+ ...+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 345667778999999999999999999976 4556665421 121 1 1110 111 222233222
Q ss_pred eCCceEEEEEEecCCCCCCCCceeeec----C--cc-ceEEecCC-CceEEEEEEeeeecCcccchhhHhhhhchhhHHH
Q 004294 417 HGEGTWAVVDVSLDNLRPSPAVRCRRR----P--SG-CLIQEMPN-GYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGA 488 (763)
Q Consensus 417 ~~~g~w~VvDvS~d~~~~~~~~~~~~l----P--SG-clIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA 488 (763)
++.++....- +...++++.. + .| .-+++.++ |.++|+|--|++... .++ -++++.-+-=+.
T Consensus 63 ------v~~~~~~~~~-~~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~~ 131 (144)
T cd08866 63 ------VVLELREREE-FPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQDL 131 (144)
T ss_pred ------EEEEEEEecC-CCceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHHH
Confidence 1111111000 0011111111 0 12 23677887 789999987777653 333 367766666777
Q ss_pred HHHHHHHHHHHH
Q 004294 489 KRWVATLDRQCE 500 (763)
Q Consensus 489 ~rWlatLqRqce 500 (763)
++-++.|+++||
T Consensus 132 ~~~l~~lr~~ae 143 (144)
T cd08866 132 PTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHh
Confidence 888888888776
No 86
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=88.99 E-value=6.7 Score=38.25 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=75.1
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+-+|.-.+..+-+++-|..+|-+.||.+ .-++|++.|..|- |+ . ..+....+ ..+.-|.=|.+ +.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~----~~~~~l~~~~~~~--~~-r---~~i~~~~~--g~~~~w~s~~~--~~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEY----AEAEVLEEDGDTV--RF-R---LTMHPDAN--GTVWSWVSERT--LD 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccce----EEEEEEEecCCeE--EE-E---EEEEeccC--CEEEEEEEEEE--ec
Confidence 45667778999999999999999999976 4567777543321 11 1 11122222 12222322433 23
Q ss_pred CceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004294 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (763)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRq 498 (763)
...|-|.=...... +| ..+=-...+++.++| |+|++.-+++...-. .+.-+++..-.--.-+.=+++|.+.
T Consensus 71 ~~~~~i~~~~~~~~---p~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~Lk~~ 141 (146)
T cd08860 71 PVNRTVRARRVETG---PF---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMARIKKK 141 (146)
T ss_pred CCCcEEEEEEecCC---Cc---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHHHHHH
Confidence 33343331122111 11 122223446888887 999999998865211 2222233222223345566777777
Q ss_pred HHH
Q 004294 499 CER 501 (763)
Q Consensus 499 cer 501 (763)
+|+
T Consensus 142 aE~ 144 (146)
T cd08860 142 IEA 144 (146)
T ss_pred hhh
Confidence 665
No 87
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=88.60 E-value=5.5 Score=41.01 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=62.0
Q ss_pred CCCcccccCCCC--CceEEEEccCCCCCCCCCceEEEEEEEeecc-CChhhHhhhhcccCccchhhhccCCCceeEEeec
Q 004294 547 AHTWTTLSGTGA--DDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (763)
Q Consensus 547 ~~~W~~l~~~~~--~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (763)
+++|.......+ .+|+|-.|+..+ . | +.--++...++ +||+.|+++|.|...|.+||-.. .|.--|
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~~-s----~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~l 89 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPKG-T----G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHETL 89 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccCC-C----C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEEEE
Confidence 378998754322 238877776532 1 2 23455666775 89999999999999999999543 232223
Q ss_pred ccCCCCCceeEEEEeeeccCCCCCCCceEEEEecccCCCCcEEEEe
Q 004294 624 ANGRDTGNCVSLLRVNCLQSANSSQSNMLILQESCTDPTASFVIYA 669 (763)
Q Consensus 624 a~g~~~gn~vSll~~~~~~~~~~~~~~~liLQes~~D~sgs~vVyA 669 (763)
.+..+.++.|--.... + +---...+..+....+.|.-|+++|..
T Consensus 90 e~~~~~~~~i~y~~~~-~-P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 90 EEDEKSGTEIVRWVKK-F-PFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EecCCCCcEEEEEEEE-C-CCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 3322324543333222 1 111122344444445666566666654
No 88
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=88.43 E-value=4 Score=42.48 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhc
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDIL 611 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdil 611 (763)
...+|...... +||.|..+.+....|.- -= +---++.-|+.|+||+.+..+|.+||-.
T Consensus 21 ~~~~Wkl~k~~--~~~~v~~k~~~ef~gkl----~R--~Egvv~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 21 LEEEWRVAKKS--KDVTVWRKPSEEFGGYL----YK--AQGVVEDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred cccCcEEEEeC--CCEEEEEecCCcCCCce----EE--EEEEecCCHHHHHHHHhcccchhcccch
Confidence 56789866433 88999999886545422 11 1111278889999999999999999943
No 89
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.42 E-value=8.6 Score=35.66 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=65.3
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~ 419 (763)
+-.+...+.++.+.|.|.+.|.+-+|.+.. +++++. |...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~----~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCES----LEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhh----ccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 445677889999999999999999997643 555542 11111 111112 222 2232223455543344
Q ss_pred ceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhc
Q 004294 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVST 482 (763)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~S 482 (763)
..+++.-..... ..+ ...=--+-+.+. +|.++|||.-+++... .+..|..++++.
T Consensus 72 ~~~~~~~~~~~~---~~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~~~ 126 (144)
T cd05018 72 ESYTITGEGKGG---AGF---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLIDG 126 (144)
T ss_pred cEEEEEEEEcCC---Cce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHHHH
Confidence 554444221111 111 111122446777 5679999999999753 344555555533
No 90
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=86.96 E-value=12 Score=34.24 Aligned_cols=133 Identities=14% Similarity=0.095 Sum_probs=68.8
Q ss_pred eEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCc
Q 004294 341 AVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEG 420 (763)
Q Consensus 341 g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g 420 (763)
..|...+..+-+.|.|.+.|.+-+|.+ ..++++..+. ..|+...++... . +.+. -+|.. .+++
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~~ 69 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDDA 69 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCcc
Confidence 457778999999999999999888854 4556655432 134432222110 0 1111 11111 1111
Q ss_pred eEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004294 421 TWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (763)
Q Consensus 421 ~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqc 499 (763)
.-.|. ..+... +.++ ...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-...++.|.++|
T Consensus 70 ~~~i~-~~~~~~-~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 70 ERRYS-YRIVEG-PLPV---KNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CCEEE-EEecCC-CCCc---ccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 00111 111110 0011 111123557788887899999999887755 3334444444444556666666555
No 91
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=85.45 E-value=6.1 Score=41.55 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=78.3
Q ss_pred EechhhHHHHhcCh---hhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCc
Q 004294 344 IMNHISLVEILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEG 420 (763)
Q Consensus 344 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g 420 (763)
.+.|..+-+.|+|. .+|=.+- .+-.||+.... .|+ .++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~v----i~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMV----IELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHh----hhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 45688999999995 6898774 33345444432 343 78999999998876 5999999888777777
Q ss_pred eEEEEEEecCCCC--C-CCCceeeecCccceEE-----ecCCC-ceEEEEEEe
Q 004294 421 TWAVVDVSLDNLR--P-SPAVRCRRRPSGCLIQ-----EMPNG-YSKVTWVEH 464 (763)
Q Consensus 421 ~w~VvDvS~d~~~--~-~~~~~~~~lPSGclIq-----~~~nG-~skVtwVeH 464 (763)
.-+||-.|++.-- + ..++|..-.=||.+|| +-++| .|-++|++|
T Consensus 131 ~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 7888877776321 1 1458889999999999 55555 355566554
No 92
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=85.39 E-value=17 Score=38.64 Aligned_cols=186 Identities=19% Similarity=0.282 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcccccCCCC-----Cce-EEEEccCCCCCCCCC-ceEEEEEEEeeccCChhhHhhh
Q 004294 526 SMLKLAERMVISFCAGVSASTAHTWTTLSGTGA-----DDV-RVMTRKSVDDPGRPP-GIVLSAATSFWLPVPPKRVFDF 598 (763)
Q Consensus 526 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~-----~dv-rv~~r~~~~~~g~p~-G~vl~A~tS~wLpv~p~~vf~F 598 (763)
-|+.||..-+.-|-. +.-.+.--|.+..+.+. |.. ++..+.. .+ .|. ..+..+-++-.+++.|..|.++
T Consensus 3 ~~~~lA~~am~Ell~-~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~--~~-~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELLK-LAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG--GS-KPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHHH-HhccCCCCceecCCCCccccCHHHHhhcccCcC--CC-CCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 478899999999986 55556778998765532 222 2222221 11 243 4577888888999999999999
Q ss_pred hcccCccch-hhhccCCCceeEEeecccCC--CCCceeEEEEeeeccCCCC--CCCceEEEEecccCCCCcEEEEe-ecc
Q 004294 599 LRDENTRSE-WDILSNGGVVQEMAHIANGR--DTGNCVSLLRVNCLQSANS--SQSNMLILQESCTDPTASFVIYA-PVD 672 (763)
Q Consensus 599 Lrd~~~R~e-Wdils~G~~vqe~~~ia~g~--~~gn~vSll~~~~~~~~~~--~~~~~liLQes~~D~sgs~vVyA-PvD 672 (763)
|.|..++.+ .+-.+.-. .-+.-|.+|. .++..+-|+... |....+ .-.+..+|.-|.--+-|+.+|-- .+|
T Consensus 79 lmD~~kW~~~Fp~iv~~a--~tl~vistg~~g~~~G~lqlmyae-l~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld 155 (229)
T cd08875 79 LMDVNKWSELFPGIVSKA--KTLQVISTGNGGNRNGTLQLMYAE-LQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSID 155 (229)
T ss_pred HhChhhhhhhhhhhccee--eEEEEeeCCCCCCCCceehhhhhh-cccCcccccCCeEEEEEEEEEeCCCeEEEEEEeec
Confidence 999666555 44233222 2222233333 334444444432 111111 22478999988777788876633 444
Q ss_pred hhhhhhhhcCCCCC---CccccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhccCCccccc
Q 004294 673 IVAMNVVLNGGDPD---YVALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDSVPTAKL 735 (763)
Q Consensus 673 ~~~m~~vm~G~d~~---~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~ 735 (763)
.. + +...+. .--.+||||-|=| . .+|+|.+|+-=++-++..+.-.+
T Consensus 156 ~~--~---~~p~~~~~~r~~~~PSGcLIq~----~--------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 156 GV--Q---TAPPPASFVRCRRLPSGCLIQD----M--------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred cc--c---cCCCCCCccEEEEecCcEEEEE----C--------CCCceEEEEEEEEeccCCccccc
Confidence 21 0 111122 2358999999977 1 12678999887777766544333
No 93
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=85.06 E-value=11 Score=35.32 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=77.9
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+..|...+..+.+++-|.+.|.+.+|.+ ...+|++.+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 34566778889999999999999999976 4456676433 12 22223333232 134443 343321 2
Q ss_pred CceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004294 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (763)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRq 498 (763)
+. .+ -=.++++. + ..+=--..+++.++|.|+|+|.-|++..-. ++.+|++.-+.=..++-|.++.+.
T Consensus 68 ~~-~i-~~~~~~g~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 68 PE-SI-EAELVDGP----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred CC-EE-EEEecCCC----h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 32 11223321 1 112224557889989999999999998733 334444333333467777888777
Q ss_pred HHH
Q 004294 499 CER 501 (763)
Q Consensus 499 cer 501 (763)
|++
T Consensus 135 ~~~ 137 (138)
T cd07813 135 AKQ 137 (138)
T ss_pred Hhh
Confidence 764
No 94
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=84.58 E-value=5.2 Score=41.66 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=64.1
Q ss_pred CeeeeeehhhhcCCCCccCceeEEEEe-eeeeCC-ceEEEEEEecCCCC-C---CCCceeeecCccceEEecCC---Cce
Q 004294 387 GALQVMTAEFQVPSPLVPTRESYYVRY-CKQHGE-GTWAVVDVSLDNLR-P---SPAVRCRRRPSGCLIQEMPN---GYS 457 (763)
Q Consensus 387 G~lqlm~aEl~v~SpLvp~Re~~fLRy-ckq~~~-g~w~VvDvS~d~~~-~---~~~~~~~~lPSGclIq~~~n---G~s 457 (763)
+...+.|.+..+|-| +..|||..|.. +...+. ..++|+..+++.-. + ..++|++ -=||..|+..|. +-.
T Consensus 89 ~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~ 166 (208)
T cd08864 89 VVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSN 166 (208)
T ss_pred ceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcC
Confidence 356788888889988 89999999999 666652 67899999986432 2 2678888 789999998885 478
Q ss_pred EEEEEEeeeecCc-ccch
Q 004294 458 KVTWVEHVEVDDR-GVHN 474 (763)
Q Consensus 458 kVtwVeH~e~d~~-~v~~ 474 (763)
.|+|+==...|+. .||.
T Consensus 167 ~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 167 KVEWIMATRSDAGGNIPR 184 (208)
T ss_pred CEEEEEEEeeCCCCcCcH
Confidence 9999983344454 3554
No 95
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=84.57 E-value=1.1 Score=36.70 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccch
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 141 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNR 141 (763)
||+|..+|-+|-..+-..++... ....||+++|+...+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46778899999888888888775 57789999999999999999875
No 96
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=83.96 E-value=0.65 Score=55.44 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 97 fT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
|+.. ...|...|..|..|+..+...+|.+.||..+.||.||+++++.....
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 4433 78889999999999999999999999999999999999998887653
No 97
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=83.85 E-value=18 Score=33.30 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=73.6
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+..|...+.++.+.|.|.+.|.+.+|.+ ..++++..+..| .-...+ +.+ ...+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~----~~~~~~~~~~~~----~~~~~~--~~~--~~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKV----KSVEVLLRDNDG----RPEMVR--IGV--GAYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcce----EEEEEeccCCCC----CEEEEE--EEE--eeeeEEEEEEEEEEEcC-
Confidence 45677888999999999999999999975 345666544322 211122 222 12244555556665532
Q ss_pred Cce--EEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHH
Q 004294 419 EGT--WAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLD 496 (763)
Q Consensus 419 ~g~--w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLq 496 (763)
... |-+.+ +. .+.... .-+-+++.++ .|+|||.-+++..- .++ ..++....--+.+.-+..|.
T Consensus 73 ~~~i~~~~~~----~~---~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~ 137 (140)
T cd07819 73 AGSVSWTLVE----GE---GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-PLP---GFLKRKAEPLVLDEALKGLK 137 (140)
T ss_pred CCcEEEEEec----cc---ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC-CCC---HHHHHHhhhHHHHHHHHhHh
Confidence 222 22221 11 111111 1356778877 59999999998754 233 33443334444555555554
Q ss_pred HH
Q 004294 497 RQ 498 (763)
Q Consensus 497 Rq 498 (763)
++
T Consensus 138 ~~ 139 (140)
T cd07819 138 KR 139 (140)
T ss_pred hh
Confidence 43
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.24 E-value=4.6 Score=35.38 Aligned_cols=50 Identities=28% Similarity=0.456 Sum_probs=36.1
Q ss_pred hHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh----HHHHHHhh
Q 004294 149 HERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID----RISAIAAK 219 (763)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~----r~~~~~~~ 219 (763)
+.-.....|+.+++.|+.+|..+.+. ...|+.||.+|++|.. |+.++.+|
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e---------------------~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEE---------------------NEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677888888888888887764 4679999999998876 44554444
No 99
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=82.93 E-value=19 Score=36.18 Aligned_cols=168 Identities=19% Similarity=0.281 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhh
Q 004294 530 LAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 530 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
|+.+....|.. ......++|.........++.+ ++... +.+ ..+...++..-++.++..+|..|.|... +||
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~~--~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd 73 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVYY--KKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QWD 73 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEEE--EEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HHS
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEEE--EEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hcc
Confidence 45555555554 3356778999887333344443 33321 111 2456677888889888877777777444 999
Q ss_pred hccCCCceeEEeecccCCCCCceeEEEEeeeccCCCC-CCCceEEEEecccCCCCcEE-EEeecchhhhhhhhcCCCCCC
Q 004294 610 ILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQSANS-SQSNMLILQESCTDPTASFV-IYAPVDIVAMNVVLNGGDPDY 687 (763)
Q Consensus 610 ils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~~~~~-~~~~~liLQes~~D~sgs~v-VyAPvD~~~m~~vm~G~d~~~ 687 (763)
-... .++.+..|. ++..|...-.+ +....+ ...+.++++-...+.-|+++ ++..||.+..... .+..
T Consensus 74 ~~~~--~~~~le~~~----~~~~i~~~~~~-~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 74 KMCV--EAEVLEQID----EDTDIVYFVMK-SPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp TTEE--EEEEEEEEE----TTEEEEEEEEE--CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred cchh--hheeeeecC----CCCeEEEEEec-ccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 5432 234444442 23444433322 111002 22356666665556667654 4558887643221 2334
Q ss_pred c--cccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhcc
Q 004294 688 V--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVD 728 (763)
Q Consensus 688 v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~ 728 (763)
| -+++|||.|-|.+. +.|.+|.-.|+=..
T Consensus 143 VR~~~~~s~~~i~~~~~------------~~~~vt~~~~~D~~ 173 (206)
T PF01852_consen 143 VRAEILISGWVIRPLGD------------GRTRVTYVSQVDPK 173 (206)
T ss_dssp EEEEEESEEEEEEEETT------------CEEEEEEEEEEESS
T ss_pred ceeeeeeEeEEEEEccC------------CCceEEEEEEECCC
Confidence 4 38999999999432 24888887776544
No 100
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.87 E-value=36 Score=31.32 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=72.3
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~ 419 (763)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. . +. . +.+-.|....+++ ..+++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~--~----~~-~-----~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD--T----RS-H-----WKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC--C----ce-E-----EEEecCCCCcEEE-EEEEec-cCC
Confidence 3455668899999999999999999965 33455532 1 11 1 1111222333433 445544 334
Q ss_pred ceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004294 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (763)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqc 499 (763)
+..++.. ..++.. .+....+ +++.++|.|+||+--|.+......-.++-+++..-.-=..+.+|..|.+++
T Consensus 67 ~~~i~~~-~~~~~~--~~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~a 137 (139)
T cd07817 67 NERIAWR-SVEGAD--PNAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLV 137 (139)
T ss_pred CCEEEEE-ECCCCC--CcceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 4433322 332221 1112222 467777789999999998775433334444554444444555666665554
Q ss_pred H
Q 004294 500 E 500 (763)
Q Consensus 500 e 500 (763)
|
T Consensus 138 E 138 (139)
T cd07817 138 E 138 (139)
T ss_pred h
Confidence 4
No 101
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=82.43 E-value=9.6 Score=35.65 Aligned_cols=137 Identities=11% Similarity=0.038 Sum_probs=67.3
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~ 419 (763)
+.+|...+..+-++|-|.++|-+.+|+ . .++++..+. ++.. ++. ....+---...+...+++ ..+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~--~---~~~~~~~~~----~~~~--~~~--~~~~~~g~~~~~~~~~~~--~~~ 68 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT--V---HVERLELDG----GVER--LRM--WATAFDGSVHTWTSRRVL--DPE 68 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC--c---eEEEEEEcC----CEEE--EEE--EEEcCCCcEEEEEEEEEE--cCC
Confidence 456677899999999999999998876 1 444554321 2221 111 111111111222222222 122
Q ss_pred ceEE-EEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004294 420 GTWA-VVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (763)
Q Consensus 420 g~w~-VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRq 498 (763)
+..+ ...+...+. | ...=.=..+++.++|.|+|||.-+++.... ++ +.-+++..-+.=--.+.|++|.++
T Consensus 69 ~~~i~~~~~~~~~~----~---~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~lk~~ 139 (142)
T cd08861 69 GRRIVFRQEEPPPP----V---ASMSGEWRFEPLGGGGTRVTLRHDFTLGID-SP-EAVPWIRRALDRNSRAELAALRAA 139 (142)
T ss_pred CCEEEEEEeeCCCC----h---hhheeEEEEEECCCCcEEEEEEEEEEECCC-Cc-hhHHHHHHHHccccHHHHHHHHHH
Confidence 3321 221211111 1 011112245777778899999999997733 22 333333333333345566666655
Q ss_pred HH
Q 004294 499 CE 500 (763)
Q Consensus 499 ce 500 (763)
+|
T Consensus 140 ~E 141 (142)
T cd08861 140 AE 141 (142)
T ss_pred hh
Confidence 55
No 102
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=82.23 E-value=1.9 Score=44.50 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeecc-CChhhHhhhhcccCccchhhhc
Q 004294 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDIL 611 (763)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 611 (763)
-.+.+|..... .++|+|-+|...+ ..+.--++...++ ++++.++++|.|...|.+||-.
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 34467987743 4689999887632 2234567777788 9999999999999999999964
No 103
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=79.00 E-value=24 Score=32.30 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=35.8
Q ss_pred ceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 447 CLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 447 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
+.+.+.+.|.|+|+|..... .....++..++...+.=+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789999864322 1223446677777888888999999988886
No 104
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.15 E-value=7.5 Score=34.61 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=42.4
Q ss_pred HHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh----HHHHHHhh
Q 004294 146 KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID----RISAIAAK 219 (763)
Q Consensus 146 Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~----r~~~~~~~ 219 (763)
|-++.-.....|+-|.+.|+.+|..+.++.. .+......|..||.+||+|.. |++++.+|
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~--------------~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556667788888888888888877652 223345669999999999985 66665544
No 105
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=76.98 E-value=59 Score=29.65 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEee
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLS 378 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 378 (763)
+..|...+.++-+.|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4467789999999999999999988855 4556666
No 106
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=76.88 E-value=3.3 Score=44.08 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=46.3
Q ss_pred CCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeec
Q 004294 545 STAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHI 623 (763)
Q Consensus 545 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~i 623 (763)
...++|..-.. .++|+|-++... . +++-+.=+-+++|++.||++|.|...|.+||.... .++.+-.|
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s-----~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~--e~~vIe~i 122 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED-----K---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYR--SCELVQQV 122 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC-----C---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhcc--EEEEEEec
Confidence 35667976533 489999995531 1 13335556779999999999999999999995431 24444444
No 107
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=76.74 E-value=21 Score=36.74 Aligned_cols=180 Identities=14% Similarity=0.210 Sum_probs=91.3
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeec-cCChhhHhhhhcccCccchhhhccCCCceeEEeecc
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWL-PVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wL-pv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (763)
-..+|..... .++|+|-.|...+ . |+ .--++...+ ++|++.+|++|.|...|.+||-.. +|.--|.
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-s----~~-~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~le 85 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-T----GL-YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVVD 85 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-C----Cc-EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEEE
Confidence 3456987743 4679998887643 1 22 234554545 799999999999999999999543 3332232
Q ss_pred cCCCCCceeEEEEeeeccCCCCCCCceEEEEecccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CccccCCccEEccC
Q 004294 625 NGRDTGNCVSLLRVNCLQSANSSQSNMLILQESCTDPT-ASFVIYA-PVDIVAMNVVLNGGDPD--YVALLPSGFAILPD 700 (763)
Q Consensus 625 ~g~~~gn~vSll~~~~~~~~~~~~~~~liLQes~~D~s-gs~vVyA-PvD~~~m~~vm~G~d~~--~v~lLPSGF~I~Pd 700 (763)
+..+.++.|--.... +. .--...++.+-+-...|.. |.++|.. -|+-+.. ..-+. -|..+.+|+.|-|.
T Consensus 86 ~~~~~~~~i~y~~~~-~P-~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~ 158 (207)
T cd08911 86 EDPETGSEIIYWEMQ-WP-KPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPH 158 (207)
T ss_pred ccCCCCCEEEEEEEE-CC-CCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeC
Confidence 222334443333222 11 1112223444333355644 4434432 1221100 01111 24456777888775
Q ss_pred CCCCCCCCCCCCCCCCceeEEeeehhccCCcccccccchhh--hhhhhhhHHHHHHHHhhc
Q 004294 701 GTSLHGANIGEAASGGSLLTVAFQILVDSVPTAKLSLGSVA--TVNNLIACTVERIKASLS 759 (763)
Q Consensus 701 g~~~~~~~~~~~~~~gsllTvaFQil~~~~~~a~~~~~sv~--tv~~li~~tv~~Ik~al~ 759 (763)
+.. ..+|+-++.-++ .+ |...+. .++. -+...+-.++++++.|..
T Consensus 159 ~~~---------~~~~~~~~~~~~--~d--PgG~IP-~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 159 KSF---------DEPGFEFVLTYF--DN--PGVNIP-SYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CCC---------CCCCeEEEEEEE--eC--CCCccC-HHHHHHHHHhhccHHHHHHHHHHh
Confidence 321 124666654333 22 222221 1222 234455578888888764
No 108
>PRK10724 hypothetical protein; Provisional
Probab=76.66 E-value=58 Score=32.38 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=80.7
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~ 417 (763)
+.+.+|.-.+..+.+.+.|.++|-+.+|-. ...+|+..... + +.+++.+--.-+ ++-+.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~----~~s~vl~~~~~----~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGC----TGSRVLESTPG----Q----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCccc----CeEEEEEecCC----E----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 456788889999999999999999999855 44556664321 2 456665533322 34333343332
Q ss_pred CCceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004294 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (763)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqR 497 (763)
.++ .+.+ ..+++ + .+.+=.-.-+++.++|.|+|+.--+.|+.. .||.+++....-=.|++=+.+..+
T Consensus 83 ~~~-~I~~-~~~~G----p---F~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 83 SNQ-SILM-QLVDG----P---FKKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred CCC-EEEE-EecCC----C---hhhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3333 22332 2 233444445677887789999988888653 344455544444455666666644
Q ss_pred HHHHH
Q 004294 498 QCERL 502 (763)
Q Consensus 498 qcerl 502 (763)
-|+.+
T Consensus 150 Ra~~~ 154 (158)
T PRK10724 150 RAKEV 154 (158)
T ss_pred HHHHH
Confidence 45443
No 109
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=72.83 E-value=5.4 Score=43.46 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 153 ENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 153 e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
....+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 345577777788777777644431 122338888888888765
No 110
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=72.64 E-value=17 Score=44.23 Aligned_cols=122 Identities=19% Similarity=0.306 Sum_probs=68.6
Q ss_pred eccCChhhHhhhhcccC-ccchhhhc-cCCCceeEEeecccCCCCCceeEEEEee--eccCCCCCCCceEEEEecccCCC
Q 004294 587 WLPVPPKRVFDFLRDEN-TRSEWDIL-SNGGVVQEMAHIANGRDTGNCVSLLRVN--CLQSANSSQSNMLILQESCTDPT 662 (763)
Q Consensus 587 wLpv~p~~vf~FLrd~~-~R~eWdil-s~G~~vqe~~~ia~g~~~gn~vSll~~~--~~~~~~~~~~~~liLQes~~D~s 662 (763)
-++.+|+.||++|-+.. .|.|||.. ..|..++++ +...+|.--+.. .+... -...+..++.--.-+.-
T Consensus 234 VV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I-------D~htdI~Y~~~~~~~~~~~-ispRDFV~~Rywrr~eD 305 (719)
T PLN00188 234 VVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV-------DGHTAILYHRLQLDWFPMF-VWPRDLCYVRYWRRNDD 305 (719)
T ss_pred EecCCHHHHHHHHhccCcccccchhcccceEEEEEe-------cCCeEEEEEEeccccccCc-cCcceeEEEEEEEEcCC
Confidence 35899999999997444 99999954 334444444 334444422221 11011 12235555555555666
Q ss_pred CcEEE-EeecchhhhhhhhcCCCCCCc--cccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC
Q 004294 663 ASFVI-YAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS 729 (763)
Q Consensus 663 gs~vV-yAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~ 729 (763)
|+|++ |-+|.-+.- +--+.+| -+-|+||.|.|--... +..+|+||--+|+=...
T Consensus 306 GsYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwiIsPL~~~~--------g~~r~lv~~~lqtDlkG 362 (719)
T PLN00188 306 GSYVVLFRSREHENC-----GPQPGFVRAHLESGGFNISPLKPRN--------GRPRTQVQHLMQIDLKG 362 (719)
T ss_pred CcEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEEEEECCCCC--------CCCceEEEEEEEEccCc
Confidence 77765 555555310 0012222 3779999999932211 12578888888876553
No 111
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.53 E-value=11 Score=32.77 Aligned_cols=60 Identities=28% Similarity=0.368 Sum_probs=38.8
Q ss_pred HHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh----HHHHHHhh
Q 004294 146 KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID----RISAIAAK 219 (763)
Q Consensus 146 Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~----r~~~~~~~ 219 (763)
|-++.-.....|+-|.+.|+..|..+..+. .+.....+.|..||.+||+|-. |+.++..|
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~--------------q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEV--------------QNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555667777778877777766544 1223345668899999999864 66665544
No 112
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=72.18 E-value=43 Score=31.58 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=32.5
Q ss_pred EEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 449 IQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 449 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
+++. +|+|+|+|..+.++.-.....++.+++...+.=...+.|..|.+++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999888755554555555544444444555666655554
No 113
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=71.58 E-value=79 Score=28.66 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=71.6
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCC
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGE 419 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~ 419 (763)
+..|...+..+-++|-|.++|.+-.|.+ ..+++++.+..+ .|+.-.+...+ -+.+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~~--~g~~~~~~~~~------~g~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPVG--VGTRYHQVRKF------LGRRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCCc--CccEEEEEEEe------cCceEEEEEEEEEecCC
Confidence 4456678899999999999999999976 356666544322 24332222111 01111123344432222
Q ss_pred ceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHH
Q 004294 420 GTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQC 499 (763)
Q Consensus 420 g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqc 499 (763)
..+. ... ..+ +-.+.. =+-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|.+.+
T Consensus 72 ~~~~-~~~-~~~--~~~~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 72 RRVV-FRG-SSG--PFPYED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred cEEE-EEe-cCC--CcceEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 2221 111 111 001111 1336677665 99999998876 333445555665555555566666665554
Q ss_pred H
Q 004294 500 E 500 (763)
Q Consensus 500 e 500 (763)
|
T Consensus 139 e 139 (140)
T cd08865 139 E 139 (140)
T ss_pred h
Confidence 4
No 114
>smart00338 BRLZ basic region leucin zipper.
Probab=70.51 E-value=15 Score=30.87 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el 210 (763)
+.....|..+.+.|..+|..|...+ .+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 4556667777888888888777643 56777777777765
No 115
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=70.51 E-value=0.76 Score=39.18 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQ 139 (763)
++|++||+++...+-..+.. ......++|+++|+++.++..|-+
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHHH
Confidence 34567999988777666621 235678899999999999998853
No 116
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=69.80 E-value=7 Score=41.97 Aligned_cols=41 Identities=37% Similarity=0.497 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 153 ENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 153 e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
....+++||++|++|+..++... .+.+.|+.||.+||+.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 44556666666666666666544 123457777777777654
No 117
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=69.59 E-value=12 Score=39.59 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=46.5
Q ss_pred cCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEE-EEEEEeecc-CChhhHhhhhcccCccchhhhc
Q 004294 543 SASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVL-SAATSFWLP-VPPKRVFDFLRDENTRSEWDIL 611 (763)
Q Consensus 543 ~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdil 611 (763)
-+-..++|..... .++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-
T Consensus 21 ~~~~~~~W~l~~~--~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 21 EDVGADGWQLFAE--EGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred ccCCCCCCEEEEe--CCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 3445568987753 5689999987643 2 2332 356777778 9999999999999999999964
No 118
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.01 E-value=22 Score=29.84 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYREA 174 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a 174 (763)
......|....+.|..+|..|+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777775553
No 119
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.06 E-value=11 Score=35.54 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=14.6
Q ss_pred chhhhHHHHHHHHHHHhHHHH
Q 004294 195 DEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~ 215 (763)
+..+|++||+.||+.|.++..
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456677788877777776544
No 120
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.65 E-value=10 Score=43.95 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHhHHHH
Q 004294 150 ERHENTQLRTENEKLRADNMRY 171 (763)
Q Consensus 150 ~r~e~~~l~~ene~L~~en~~l 171 (763)
...+|+.|++||++|+.....+
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 3444555555555555444333
No 121
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.86 E-value=27 Score=36.92 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=36.1
Q ss_pred hhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 144 QMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 144 K~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
|.|-+...+++..|..+++.|.+++..+++.+ .+|+.||++|.+++.++-.
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erl---------------------k~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERL---------------------KRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhchh
Confidence 44444555667777777777777777777755 6788888888888876543
No 122
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=60.10 E-value=60 Score=29.43 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=53.2
Q ss_pred hhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 142 RTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
..+.++..-+++-..|+.+.++=..-+..|..++....++-+..| ..+++..+.|..|.+.|..|+.++..
T Consensus 5 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 5 ALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888888888777778888888877766554433 45677888899999999999877654
No 123
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=58.95 E-value=23 Score=32.25 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=20.5
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHH
Q 004294 193 SFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 193 ~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
-++.-+...||.+|++|+.++..+
T Consensus 43 nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 43 NPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999998875
No 124
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=58.64 E-value=9.2 Score=49.06 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=69.0
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHH
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMR 170 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~ 170 (763)
+-.+++++.-|...|-.+|+...+|.-.++..++.-|++..|.+..|||++++++.+...+.. +-..
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~a-------------rg~~ 511 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLA-------------RGEV 511 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccccccc-------------cccc
Confidence 455778999999999999999999999999999999999999999999999998887544322 1112
Q ss_pred HHHHhcCCCCCCCCCCCCC-CCCCcc
Q 004294 171 YREALSNASCPNCGGPTAI-GEMSFD 195 (763)
Q Consensus 171 l~~a~~~~~C~~Cgg~~~~-~~~~~e 195 (763)
+.---...-|..|...... +.+...
T Consensus 512 ~~~~~~p~~C~~C~~stttng~Lsih 537 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTTNGNLSIH 537 (1406)
T ss_pred ccCCCCcccceeeeeeeecchHHHHH
Confidence 2223344558888877644 444333
No 125
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=57.72 E-value=16 Score=34.53 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=15.5
Q ss_pred cchhhhHHHHHHHHHHHhHHH
Q 004294 194 FDEHHLRLENARLREEIDRIS 214 (763)
Q Consensus 194 ~e~~~L~~En~~Lk~el~r~~ 214 (763)
.+..+|++||..||+.|+++.
T Consensus 36 EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 36 EENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888888887753
No 126
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=56.35 E-value=1.8e+02 Score=27.54 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=69.2
Q ss_pred EEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeCCce
Q 004294 342 VVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHGEGT 421 (763)
Q Consensus 342 ~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~~g~ 421 (763)
.+...+.++-+++.|.++|.+-.|.+ ..+++++.+...+.++.++ +.. ....|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~~~~~~~~~g~~~~-~~~-----~~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVELEPGDEAGIGARRR-YTW-----RGLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEccCCCCCCcceEEE-EEE-----EecCCcEEEEEEEEEeecCCcE
Confidence 45567899999999999999999966 5566666322222222222 111 0112222233344444334445
Q ss_pred EEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCc---ccchhhHhhhhchhhHHHHHHHHHH
Q 004294 422 WAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDR---GVHNLYKQLVSTGNAFGAKRWVATL 495 (763)
Q Consensus 422 w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~---~v~~l~rpl~~Sg~afgA~rWlatL 495 (763)
+++. . ++. + ..+ --+-|++.++ +|+||+-.+++..-- ..+.++.+++....-=....-+..|
T Consensus 78 ~~~~-~--~g~----~-~~~---~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L 142 (146)
T cd07824 78 LEVR-A--SGD----L-EGV---GRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGL 142 (146)
T ss_pred EEEE-E--EEe----e-eEE---EEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHH
Confidence 5442 2 111 1 010 0123666555 499999888887542 3556666666444433333444444
No 127
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=55.75 E-value=1.9e+02 Score=27.47 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=25.0
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccc
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGI 367 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 367 (763)
.+-.|...+..+-+.|.|.+.|.+-+|.+
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~ 31 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGA 31 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCc
Confidence 34567788999999999999999999865
No 128
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=55.72 E-value=25 Score=41.33 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.1
Q ss_pred cchhhhHHHHHHHHHHHhHHHH
Q 004294 194 FDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 194 ~e~~~L~~En~~Lk~el~r~~~ 215 (763)
.|.++|+.||+.||++|+-+..
T Consensus 316 ~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 316 SENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHhhhHHHHHHHHHHhh
Confidence 5678899999999999886544
No 129
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.27 E-value=26 Score=32.76 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=20.1
Q ss_pred ceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHH
Q 004294 133 QVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (763)
Q Consensus 133 QVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~ 173 (763)
+...||++.=- .+-.+.+++...+++++++++++|..|+.
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578865411 11112244455566666666666655443
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.04 E-value=28 Score=39.80 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 146 KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 146 Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
+..+..+....+.+++..++++.+.++..+ +....+.++|+.||..|.+|.-+..+
T Consensus 21 ~laq~~k~~s~~~aq~~~~~a~~~ai~a~~--------------~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 21 ELAQCEKAQSRLSAQLVILRAESRAIKAKL--------------QEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777888888888777766 45556677778888777777766433
No 131
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.91 E-value=13 Score=29.37 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHhHHHHH
Q 004294 197 HHLRLENARLREEIDRISAI 216 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~~~~ 216 (763)
+.|..||.||++|++.+.++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999988873
No 132
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=52.84 E-value=2.8e+02 Score=28.63 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhc-ccCc
Q 004294 526 SMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLR-DENT 604 (763)
Q Consensus 526 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLr-d~~~ 604 (763)
+-.++++.....|-.-. ....+|.... .+.++++|.++...+ .| --.+.-.-+|+|++.||++|. |-..
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~-~~------k~~k~e~~i~~~~~~l~~~l~~d~e~ 74 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPD-IG------KVFRLEVVVDQPLDNLYSELVDRMEQ 74 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCC-CC------cEEEEEEEecCCHHHHHHHHHhchhh
Confidence 33445555555554444 2456898663 335678888866532 21 333455567999999996666 5699
Q ss_pred cchhhhcc
Q 004294 605 RSEWDILS 612 (763)
Q Consensus 605 R~eWdils 612 (763)
+.+|+-.+
T Consensus 75 ~~~W~~~~ 82 (209)
T cd08905 75 MGEWNPNV 82 (209)
T ss_pred hceecccc
Confidence 99999543
No 133
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=51.18 E-value=30 Score=37.88 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=20.0
Q ss_pred HhHHHHhHHHHHHHHHHHHhHHHHHHH
Q 004294 148 QHERHENTQLRTENEKLRADNMRYREA 174 (763)
Q Consensus 148 ~~~r~e~~~l~~ene~L~~en~~l~~a 174 (763)
+++|.+.+.+..|.+.|...|.+|++.
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~q 270 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQ 270 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777888888888888887774
No 134
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.46 E-value=38 Score=29.44 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHH
Q 004294 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRI 213 (763)
Q Consensus 154 ~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~ 213 (763)
+.....++..|..|++.....+ +....+..+|+.||..|++|++..
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l--------------~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQL--------------GDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666655544443 233346678888888888887653
No 135
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.88 E-value=29 Score=37.64 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=16.8
Q ss_pred CcchhhhHHHHHHHHHHHhHHHHHHhh
Q 004294 193 SFDEHHLRLENARLREEIDRISAIAAK 219 (763)
Q Consensus 193 ~~e~~~L~~En~~Lk~el~r~~~~~~~ 219 (763)
..|.+.|+.++.+|++|+..+..+...
T Consensus 228 eken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 228 EKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455677777777777777664433
No 136
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=46.20 E-value=34 Score=37.41 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
-.+.+.+..||+.|+.++..+.+.. .+.++|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~------------------~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL------------------EEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhC
Confidence 4555666677777777776665533 355667777777777765
No 137
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.40 E-value=58 Score=40.69 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHHH
Q 004294 155 TQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 155 ~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
..++..+|.|.-+..-|+.++.+. || ...+.-+.+-.||.++|+|||+-|-|++.+
T Consensus 335 e~lkEr~deletdlEILKaEmeek-----G~-~~~~~ss~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 335 EALKERVDELETDLEILKAEMEEK-----GS-DGQAASSYQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CC-CCcccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455556666666677777655 32 233445789999999999999999887654
No 138
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=44.66 E-value=28 Score=38.68 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHhHHHHHHH
Q 004294 153 ENTQLRTENEKLRADNMRYREA 174 (763)
Q Consensus 153 e~~~l~~ene~L~~en~~l~~a 174 (763)
++..||+||++|++||..|+.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~e 54 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIE 54 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHH
Confidence 4455666666666666665554
No 139
>PF15058 Speriolin_N: Speriolin N terminus
Probab=43.82 E-value=42 Score=34.76 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 154 ~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
++-++.++++|-.||.+||+-. +|..||++||.-|-+.+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlV----------------------rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLV----------------------RLIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH----------------------HHHHHHHHHHHHHHHhhc
Confidence 4456777888888888888854 488899999887665544
No 140
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=43.31 E-value=47 Score=36.06 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHhH
Q 004294 197 HHLRLENARLREEIDR 212 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r 212 (763)
++|+.|+..|++-+..
T Consensus 239 ~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 239 EQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555554443
No 141
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.54 E-value=63 Score=37.59 Aligned_cols=96 Identities=11% Similarity=0.178 Sum_probs=53.9
Q ss_pred CCcCChHHHHHHHHH-Hh-cCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHH
Q 004294 94 YHRHTQHQIQEMEAF-FK-ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRY 171 (763)
Q Consensus 94 RtrfT~eQl~~LE~~-F~-~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l 171 (763)
--++|.+....|.+. |- -..+|.-+.-+++-++. |.|.|+|+-.+|....++|+.+-.+..
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv--------------RRKIrNK~SAQESRrkKkeYid~LE~r--- 280 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV--------------RRKIRNKRSAQESRRKKKEYIDGLESR--- 280 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH--------------HHHHHhhhhhHHHHHhHhhHHHHHhhh---
Confidence 446888888888764 22 23456655555555554 445555555555444444443322110
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHHH
Q 004294 172 REALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 172 ~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
+ ..|-.+ .-++..++++|..+|.-|-++|.++.++
T Consensus 281 ---v-----~~~tae--NqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 281 ---V-----SAFTAE--NQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred ---h-----hhcccC--cHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 0 011111 1345567788999999999998887665
No 142
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=41.02 E-value=79 Score=25.72 Aligned_cols=13 Identities=54% Similarity=0.723 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHh
Q 004294 199 LRLENARLREEID 211 (763)
Q Consensus 199 L~~En~~Lk~el~ 211 (763)
|..||..|+.++.
T Consensus 37 L~~en~~L~~~i~ 49 (54)
T PF07716_consen 37 LEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 143
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.95 E-value=47 Score=38.82 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=30.8
Q ss_pred hhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 142 RTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
..+.+-.+.+.....++++.++|+.|...+.... .+++...+.|..||.+|+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~--------------~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQR--------------GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455566666666665554322222 2223344567888888888874
No 144
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=40.60 E-value=2.4e+02 Score=24.42 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=31.2
Q ss_pred ceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHH
Q 004294 447 CLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLD 496 (763)
Q Consensus 447 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLq 496 (763)
.-+.+.+++.|+|+|-...+...... .++.+++...+.-.+.+.+..|+
T Consensus 90 ~~~~~~~~~~t~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T cd07812 90 WRLEPEGDGGTRVTYTVEYDPPGPLL-KVFALLLAGALKRELAALLRALK 138 (141)
T ss_pred EEEEECCCCcEEEEEEEEEecCCcch-hhhhHHHHHHHHhHHHHHHHHHH
Confidence 44666666689999988888775543 55566665555544455555553
No 145
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.71 E-value=14 Score=35.20 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.6
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004294 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
-++.+|.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999885
No 146
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.84 E-value=49 Score=33.02 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=41.2
Q ss_pred eeecccchhhhh-----HHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 004294 134 VKFWFQNKRTQM-----KTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLRE 208 (763)
Q Consensus 134 VkvWFQNRRaK~-----Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~ 208 (763)
.++||-|...-. .-..-..+...++.++..|+.++..+...+....+ .+. ..+|+.+...|++
T Consensus 56 qkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-----~~t-------~~el~~~i~~l~~ 123 (169)
T PF07106_consen 56 QKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS-----EPT-------NEELREEIEELEE 123 (169)
T ss_pred eEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCC-------HHHHHHHHHHHHH
Confidence 378888765422 23333455777777788888888877777643322 122 2335555555555
Q ss_pred HHhHHHHH
Q 004294 209 EIDRISAI 216 (763)
Q Consensus 209 el~r~~~~ 216 (763)
|+..+...
T Consensus 124 e~~~l~~k 131 (169)
T PF07106_consen 124 EIEELEEK 131 (169)
T ss_pred HHHHHHHH
Confidence 55554443
No 147
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=36.80 E-value=1.1e+02 Score=26.69 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhc
Q 004294 199 LRLENARLREEIDRISAIAAKYV 221 (763)
Q Consensus 199 L~~En~~Lk~el~r~~~~~~~~~ 221 (763)
|+.|...|.+ .+++..+|.+.+
T Consensus 50 L~~ei~~l~~-~~rIe~~Ar~~l 71 (85)
T TIGR02209 50 LQLEVAELSR-HERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHcC-HHHHHHHHHHhc
Confidence 4444444444 445566666654
No 148
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=36.56 E-value=17 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhh
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT 143 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRa 143 (763)
.+++.+...++..|... ..-.++|+++|++...|+.|.+.-+.
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALK 52 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46788888888877533 34567899999999999888754443
No 149
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.14 E-value=25 Score=32.34 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=26.3
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhhh
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45788999999999999999999999984
No 150
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=36.02 E-value=32 Score=31.40 Aligned_cols=27 Identities=33% Similarity=0.686 Sum_probs=23.1
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..++-++.||+.||++|.|.....+|.
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~ 31 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWW 31 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTS
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhh
Confidence 456778999999999999999999997
No 151
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.93 E-value=22 Score=32.46 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=24.4
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..++-++.||..||++|.|-.+..+|.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~ 28 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWD 28 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhc
Confidence 357778999999999999999999997
No 152
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=35.69 E-value=55 Score=36.80 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 152 HENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 152 ~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
..+..+++||++|+.||..|+..+. +.+.++.||.+|++.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 4455666777777777777666541 23446677777665443
No 153
>PF15392 Joubert: Joubert syndrome-associated
Probab=34.89 E-value=2.6e+02 Score=31.28 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=20.6
Q ss_pred CCcceeeecceEEEe--chhhHHHHhcCh-hhHHhhh
Q 004294 331 GFKCEASRETAVVIM--NHISLVEILMDV-NQWSTVF 364 (763)
Q Consensus 331 g~~~EAsR~~g~V~~--~~~~LVe~lmD~-~~W~~~F 364 (763)
++.+|--|+--||.= =|.++=.||.|. ..-..+|
T Consensus 240 ~~~~e~eRe~~vvSpWt~P~eI~~iL~~s~~sllqd~ 276 (329)
T PF15392_consen 240 QVCIEYEREETVVSPWTLPSEIHRILHDSHSSLLQDL 276 (329)
T ss_pred cchhhhhccccccCCCcCcHHHHHHHhcCcchhhccC
Confidence 455666777766643 366677777776 4444444
No 154
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=34.83 E-value=17 Score=34.58 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCC
Q 004294 153 ENTQLRTENEKLRADNMRYREALSNASCPNCGG 185 (763)
Q Consensus 153 e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg 185 (763)
.|++++.++..|+.....|...++...|..|-.
T Consensus 43 knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 43 KNQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 366777777778888888888899999999974
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.82 E-value=88 Score=33.09 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=9.3
Q ss_pred chhhhHHHHHHHHHHHhHHH
Q 004294 195 DEHHLRLENARLREEIDRIS 214 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~ 214 (763)
+..-|+.+-..+.+|++|+.
T Consensus 180 ~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 33344444444445555544
No 156
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.59 E-value=36 Score=34.52 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=2.3
Q ss_pred hHHHHHHHHHHHh
Q 004294 199 LRLENARLREEID 211 (763)
Q Consensus 199 L~~En~~Lk~el~ 211 (763)
|++|++|||||+.
T Consensus 29 L~~~~QRLkDE~R 41 (166)
T PF04880_consen 29 LREEVQRLKDELR 41 (166)
T ss_dssp HHHCH--------
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.87 E-value=71 Score=33.46 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHHHHHh
Q 004294 157 LRTENEKLRADNMRYREAL 175 (763)
Q Consensus 157 l~~ene~L~~en~~l~~a~ 175 (763)
..++...|+.+|+.|++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555665555544
No 158
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=33.64 E-value=30 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=28.9
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecc
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 138 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWF 138 (763)
.+++.|...+...|... ..-.++|+.+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHH
Confidence 47889999999999333 346789999999998887654
No 159
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=33.27 E-value=1.9e+02 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHhHHHHHH
Q 004294 198 HLRLENARLREEIDRISAIA 217 (763)
Q Consensus 198 ~L~~En~~Lk~el~r~~~~~ 217 (763)
+++.|...+|..++++...+
T Consensus 99 ~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 99 RLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 37788899999999887644
No 160
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=33.18 E-value=31 Score=35.21 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 177 NASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 177 ~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
.-.||.||++...-+-+...+.|+....+|++++.
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 34588888887665555555666666666666654
No 161
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=33.04 E-value=31 Score=31.47 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=24.2
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356778999999999999999999997
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.60 E-value=1.4e+02 Score=31.19 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHHHHHH
Q 004294 157 LRTENEKLRADNMRYRE 173 (763)
Q Consensus 157 l~~ene~L~~en~~l~~ 173 (763)
|+++|++|+.+...++.
T Consensus 137 L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 137 LKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 163
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.54 E-value=5.5e+02 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=21.6
Q ss_pred hhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHh
Q 004294 142 RTQMKTQHERHENTQLRTENEKLRADNMRYREAL 175 (763)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~ 175 (763)
|+|-|-- ....+....|.+.|+.+..+++|.+
T Consensus 74 kakLkes--~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 74 KAKLKES--ENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444432 3334446678889999999999877
No 164
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.10 E-value=1.8e+02 Score=25.21 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 154 ~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
...|-..++.|+.||..|++.. ..+..|++.|++..+.+..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~---------------------~~~~~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQE---------------------KTWREERAQLLEKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666633 4566666666666554433
No 165
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.78 E-value=57 Score=36.45 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=47.6
Q ss_pred cccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHHH
Q 004294 137 WFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 137 WFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
||=-=|.|+|. .+-...+.|+....++.+.+.-+++- |. ..++.+.|.++|+.+|.+|+.||-++..+
T Consensus 54 wff~i~~re~q-lk~aa~~llq~kirk~~e~~eglr~i-----~e------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREKQ-LKTAAGQLLQTKIRKITEKDEGLRKI-----RE------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHH-----HH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66544444443 34556677777788887777766652 10 11455678888999999999998888776
Q ss_pred Hhhhc
Q 004294 217 AAKYV 221 (763)
Q Consensus 217 ~~~~~ 221 (763)
..|.-
T Consensus 122 f~k~k 126 (401)
T PF06785_consen 122 FMKTK 126 (401)
T ss_pred HHHhc
Confidence 55543
No 166
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.72 E-value=79 Score=29.02 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhh-hHHHhHHHHhHHHHHHHHHHH
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ-MKTQHERHENTQLRTENEKLR 165 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK-~Kr~~~r~e~~~l~~ene~L~ 165 (763)
.+..||.+++..|... ..|.+..|++-.+|+-+..+.... +.+.....+...++.|+..|+
T Consensus 35 g~R~Yt~~di~~l~~I------------~~llr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (99)
T cd04765 35 GRRYYRPKDVELLLLI------------KHLLYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDLR 96 (99)
T ss_pred CCeeeCHHHHHHHHHH------------HHHHHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH
Confidence 4557999999988542 334567777777777777654443 444333333344444443333
No 167
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.64 E-value=94 Score=36.43 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=35.8
Q ss_pred hHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 149 HERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
+-|.+.+.+.++|++|++||++|++...+.-- .....+..+.++|..|..+|++|++++..
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~------~i~~av~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQ------QIQQAVQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999886532210 00011223344455555555555555444
No 168
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=31.57 E-value=28 Score=32.92 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEeeccCChhhHhhhhcccCccchh
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEW 608 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eW 608 (763)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 169
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.42 E-value=55 Score=30.60 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=21.9
Q ss_pred cccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHH
Q 004294 137 WFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (763)
Q Consensus 137 WFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~ 173 (763)
|+..+..+.+....+++++.++++|+.|+.+...++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444455555555566666666666666666666543
No 170
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.37 E-value=1.4e+02 Score=34.60 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCCCceeec
Q 004294 283 AVAAMEELIRMAQMGEPLWMTS 304 (763)
Q Consensus 283 A~~Am~El~~la~~~eplWi~~ 304 (763)
|..||.|+....+..---|.+.
T Consensus 402 ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 402 AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999888877777778764
No 171
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.10 E-value=32 Score=31.69 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.5
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
..++-++.|++.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999984
No 172
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.74 E-value=23 Score=32.73 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=24.5
Q ss_pred EEeeccCChhhHhhhhcccCccchhhh
Q 004294 584 TSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
.++-++.||++||+||.|.....+|.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999983
No 173
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.73 E-value=1.1e+02 Score=24.56 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHHHhHHH
Q 004294 153 ENTQLRTENEKLRADNMR 170 (763)
Q Consensus 153 e~~~l~~ene~L~~en~~ 170 (763)
.+..|+.+++.|..||..
T Consensus 13 ~yd~Lk~~~~~L~~E~~~ 30 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEK 30 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555554444
No 174
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.72 E-value=37 Score=31.78 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.0
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..+.-++.||++||++|.|..+..+|.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeC
Confidence 356667899999999999999999997
No 175
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=30.70 E-value=35 Score=31.39 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=26.3
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhhh
Q 004294 581 SAATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999983
No 176
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.66 E-value=30 Score=32.39 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=25.6
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 4689999999999999999999999983
No 177
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=30.23 E-value=2.4e+02 Score=26.53 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhh-hhHHHhHHHHhHHHHHHHHHHHHhHHH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT-QMKTQHERHENTQLRTENEKLRADNMR 170 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRa-K~Kr~~~r~e~~~l~~ene~L~~en~~ 170 (763)
..+..|+.+++..|+. ....+.+|++-.+|+..+.+... +..+..-.+..+.+.++.+.|......
T Consensus 33 ~gyR~Y~~~~l~~l~~-------------I~~lr~~G~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 99 (120)
T cd04781 33 GLRRQYDPQVLDRLAL-------------IALGRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMREL 99 (120)
T ss_pred CCceecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999853 34566777777777777766431 212223334445555566666555555
Q ss_pred HHHH
Q 004294 171 YREA 174 (763)
Q Consensus 171 l~~a 174 (763)
+...
T Consensus 100 L~~~ 103 (120)
T cd04781 100 LRHV 103 (120)
T ss_pred HHHH
Confidence 5543
No 178
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=29.91 E-value=1.8e+02 Score=26.46 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchh
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRR 142 (763)
.+..|+.+++..|+.... .+.+|++..+++-+++...
T Consensus 35 g~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 35 GYRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred CceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 345799999999966432 3456777777777776554
No 179
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=29.49 E-value=63 Score=26.74 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHhcCCC--CCHHHHHHHHHHhCCCCcc
Q 004294 97 HTQHQIQEMEAFFKECPH--PDDKQRKELSRELGLEPLQ 133 (763)
Q Consensus 97 fT~eQl~~LE~~F~~~~~--Ps~~~r~~LA~~LgL~~rQ 133 (763)
+|+.|.+.|...|+..-| |-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 588999999999987543 5566778999999998854
No 180
>PHA03162 hypothetical protein; Provisional
Probab=28.46 E-value=27 Score=34.06 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=18.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhH
Q 004294 188 AIGEMSFDEHHLRLENARLREEIDR 212 (763)
Q Consensus 188 ~~~~~~~e~~~L~~En~~Lk~el~r 212 (763)
..+++..+.++|++||..||+++.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467777888888888888887653
No 181
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=28.30 E-value=61 Score=32.04 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=35.4
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
..+|+.|.+.|+..+ +. ....++|..||++...|+.|-++.+.+.|+
T Consensus 5 ~~Lt~rqreVL~lr~-~G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRE-RG-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHH-cC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 568999999998843 22 345689999999999999998755554444
No 182
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=27.96 E-value=4.6e+02 Score=23.77 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=32.5
Q ss_pred eEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 448 LIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 448 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
-+++.++ .++|+|..+....... -+.+..+..-|..+.+..|+.+||
T Consensus 92 ~~~~~~~-~T~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 92 TLEETGG-GTRLTLTHSGFPEEDA-----EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EEEECCC-CEEEEEEEEccChHhH-----HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 3677775 5999998776543211 344566677788888899988887
No 183
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.85 E-value=37 Score=29.78 Aligned_cols=26 Identities=38% Similarity=0.837 Sum_probs=23.4
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004294 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
.++-++.||+.||++|.|..+..+|.
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~ 28 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWS 28 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhC
Confidence 46678999999999999999999996
No 184
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=27.54 E-value=70 Score=21.38 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=25.8
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeec
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFW 137 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvW 137 (763)
.++.++...+...|.... ...++++.+|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~~-----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAGE-----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCCCHHHHHHh
Confidence 366777777766676332 4567899999988777666
No 185
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=27.47 E-value=33 Score=31.50 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.4
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..|+-++.||+.||++|.|..+-.+|.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~ 29 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWF 29 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhh
Confidence 357778999999999999999999996
No 186
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.24 E-value=1.1e+02 Score=31.84 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=36.2
Q ss_pred cchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004294 139 QNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (763)
Q Consensus 139 QNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el 210 (763)
+||+.-...++.+++++.|-++.+.|..+|..+.... +.+....++|-.+++-|+.++
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~--------------~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER--------------DGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh--------------hhHHHHHHHHHHhhHHHHHHH
Confidence 3555555555566666777777777777776666554 334445566767777777766
No 187
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=26.81 E-value=84 Score=33.30 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=39.1
Q ss_pred CCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeecc-CChhhHhhhhcccCccchhhh
Q 004294 544 ASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 544 ~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdi 610 (763)
+-.+.+|..+... .+++|....-. +.| | =...|-+ -+. ++|..|+||+-|..-|.+||.
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~-~~g-~-~~Yk~~~---vfeDvtp~~~~Dv~~D~eYRkkWD~ 84 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRP-KTG-L-YEYKSRT---VFEDVTPEIVRDVQWDDEYRKKWDD 84 (219)
T ss_pred cCcccchhhhccc--CCceEEEEccc-CCC-C-EEEEEEE---EEcCCCHHHHHHHHhhhHHHHHHHH
Confidence 5677899887533 35555552111 123 3 2344433 345 999999999999999999994
No 188
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.60 E-value=83 Score=33.69 Aligned_cols=47 Identities=32% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
..+++.|+.||+.|++.|+.|.... .++..+..-|+.|.+.||++.+
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n--------------~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKN--------------HELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555555555555555554433 2222344568899999998765
No 189
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.50 E-value=3.1e+02 Score=26.03 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhh---hhHHHhHHHHhHHHHHHHHHHHHhH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT---QMKTQHERHENTQLRTENEKLRADN 168 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRa---K~Kr~~~r~e~~~l~~ene~L~~en 168 (763)
..+..|+.+++..|+ .....+.+|++-.+|+..|..... ...+...++....++++.+.|....
T Consensus 33 ~g~R~Y~~~~l~~l~-------------~I~~l~~~G~sl~eI~~~l~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 99 (124)
T TIGR02051 33 GGYRRYPEETVKRLR-------------FIKRAQELGFSLEEIGGLLGLVDGTHCREMYELASRKLKSVQAKMADLLRIE 99 (124)
T ss_pred CCCEeECHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456679999999983 334467778887777777754431 1122223333444555555555554
Q ss_pred HHHHH
Q 004294 169 MRYRE 173 (763)
Q Consensus 169 ~~l~~ 173 (763)
..+.+
T Consensus 100 ~~L~~ 104 (124)
T TIGR02051 100 RLLEE 104 (124)
T ss_pred HHHHH
Confidence 44444
No 190
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.28 E-value=1.2e+02 Score=28.55 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=26.6
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhhhcc
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEWDILS 612 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWdils 612 (763)
...|.-++.||++||+++.|..+..+|.-.+
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3467778999999999999999999998533
No 191
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.21 E-value=26 Score=28.49 Aligned_cols=9 Identities=56% Similarity=1.464 Sum_probs=4.9
Q ss_pred CCCCCCCCC
Q 004294 179 SCPNCGGPT 187 (763)
Q Consensus 179 ~C~~Cgg~~ 187 (763)
.||-|+.+.
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 799999764
No 192
>PRK00118 putative DNA-binding protein; Validated
Probab=26.13 E-value=1.5e+02 Score=27.78 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.+++.|...+...|... ....++|+.+|+++..|+.|...-|.+.|+..
T Consensus 17 ~L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~ 65 (104)
T PRK00118 17 LLTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYE 65 (104)
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 35677777776666553 34567999999999999999876666665543
No 193
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.05 E-value=1.7e+02 Score=27.67 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=41.0
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhh---hhHHHhHHHHhHHHHHHHHHHHHhH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT---QMKTQHERHENTQLRTENEKLRADN 168 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRa---K~Kr~~~r~e~~~l~~ene~L~~en 168 (763)
..+..|+.+++..|+ .....+.+|++-.+|+-+|..... ...+.......+.++++.+.|+...
T Consensus 34 ~gyR~Y~~~~l~~l~-------------~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 100 (126)
T cd04783 34 GGYRRYPEETVTRLR-------------FIKRAQELGFTLDEIAELLELDDGTDCSEARELAEQKLAEVDEKIADLQRMR 100 (126)
T ss_pred CCCeecCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356679999999984 344467888888888887765532 1112222333344455555555544
Q ss_pred HHHHHH
Q 004294 169 MRYREA 174 (763)
Q Consensus 169 ~~l~~a 174 (763)
..+...
T Consensus 101 ~~l~~~ 106 (126)
T cd04783 101 ASLQEL 106 (126)
T ss_pred HHHHHH
Confidence 444443
No 194
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.67 E-value=2.5e+02 Score=28.54 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHhHHHHH
Q 004294 197 HHLRLENARLREEIDRISAI 216 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~~~~ 216 (763)
+.|..++..++++++-+-.+
T Consensus 128 ~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666544443
No 195
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=25.58 E-value=1.6e+02 Score=33.83 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=30.4
Q ss_pred hHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 149 HERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
..+.....++.+++.|..++..+.... .+++.|..++++|++++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 19 DLYEKLKELEKELEFLDIQEEYIKEEQ---------------------KNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhC
Confidence 334444555666777777766666543 5677888888888887755
No 196
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.69 E-value=3.3e+02 Score=24.55 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=15.1
Q ss_pred chhhhHHHHHHHHHHHhHHHH
Q 004294 195 DEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~ 215 (763)
+..+|+.||..|++=+..+-+
T Consensus 45 E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 45 ENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887776544
No 197
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.52 E-value=69 Score=28.57 Aligned_cols=16 Identities=50% Similarity=0.844 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHhHHH
Q 004294 199 LRLENARLREEIDRIS 214 (763)
Q Consensus 199 L~~En~~Lk~el~r~~ 214 (763)
|..||++||+||+++.
T Consensus 5 i~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 5 IQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666443
No 198
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.16 E-value=1.9e+02 Score=31.99 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=14.2
Q ss_pred CCcchhhhHHHHHHHHHHHhHHHHH
Q 004294 192 MSFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 192 ~~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
++...++|+.+-..|.+|++.+..+
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666665543
No 199
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.01 E-value=1.8e+02 Score=25.71 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=37.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
......|+.||=.|+-...-+.+.+. -.+|....++..+.-.|+.|+..|+.|+++....
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777666666666667664 2233333455556667888888888888766543
No 200
>PRK03918 chromosome segregation protein; Provisional
Probab=23.33 E-value=2e+02 Score=35.80 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCC
Q 004294 177 NASCPNCGGPTAI 189 (763)
Q Consensus 177 ~~~C~~Cgg~~~~ 189 (763)
.+.||.|+.+...
T Consensus 435 ~~~Cp~c~~~L~~ 447 (880)
T PRK03918 435 KGKCPVCGRELTE 447 (880)
T ss_pred CCCCCCCCCcCCc
Confidence 4679999987643
No 201
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=23.32 E-value=63 Score=29.48 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=23.6
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004294 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
.+.-++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46667999999999999999999998
No 202
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.29 E-value=3.1e+02 Score=25.64 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchh
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRR 142 (763)
..+..|+.+++..|+. ....+++|++-.+|+..+.+..
T Consensus 34 ~gyR~Y~~~~i~~l~~-------------I~~lr~~G~sl~eI~~~l~~~~ 71 (123)
T cd04770 34 NGYRLYGEADLARLRF-------------IRRAQALGFSLAEIRELLSLRD 71 (123)
T ss_pred CCCccCCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhhh
Confidence 3566899999999943 3335677777777777665543
No 203
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.07 E-value=2.5e+02 Score=30.73 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHHHH
Q 004294 155 TQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIA 217 (763)
Q Consensus 155 ~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~~~ 217 (763)
...-.....+++||++|++++. + -.+++......|++|.+++..++
T Consensus 62 ~~~~~~~~~l~~EN~~Lr~e~~--------------~---l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 62 SENLKDVNNLEYENYKLRQELL--------------K---KNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------H---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334466778899999998761 1 12445555555888888888754
No 204
>PHA00728 hypothetical protein
Probab=23.03 E-value=72 Score=30.76 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=21.9
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHhhh
Q 004294 195 DEHHLRLENARLREEIDRISAIAAKY 220 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~~~~~~ 220 (763)
+.+||+.||..||+.|+++.++.+..
T Consensus 6 eveql~keneelkkkla~leal~nn~ 31 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNNE 31 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 67889999999999999988876553
No 205
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.60 E-value=64 Score=33.07 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 178 ASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 178 ~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
-.||.||.....-+-+.....|..+..+|++++++...
T Consensus 133 F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~ 170 (176)
T COG1675 133 FTCPKCGEDLEEYDSSEEIEELESELDELEEELERNDK 170 (176)
T ss_pred CCCCCCCchhhhccchHHHHHHHHHHHHHHHHHhcccc
Confidence 44999998876666677777777777777777776543
No 206
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.29 E-value=2.9e+02 Score=23.09 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHhHH
Q 004294 197 HHLRLENARLREEIDRI 213 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~ 213 (763)
..|+.++..|++++..+
T Consensus 43 ~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 207
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=21.96 E-value=71 Score=27.05 Aligned_cols=34 Identities=18% Similarity=0.494 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 177 NASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 177 ~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
+.+|++|| -+++.+.-+|.++...||+=|..++.
T Consensus 4 ~lvCSTCG-----rDlSeeRy~Lli~~~~Lk~Vl~~v~n 37 (63)
T PF05864_consen 4 QLVCSTCG-----RDLSEERYRLLIKEMSLKKVLRTVKN 37 (63)
T ss_pred eeeecccC-----CcchHHHHHHHHHHhhHHHHHHHhhc
Confidence 45799999 56777888888998999888876544
No 208
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.62 E-value=56 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.4
Q ss_pred EEeeccCChhhHhhhhcccCccchhh
Q 004294 584 TSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 584 tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988888877
No 209
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.53 E-value=25 Score=32.34 Aligned_cols=20 Identities=30% Similarity=0.703 Sum_probs=17.1
Q ss_pred HHHHHHhCCCCcceeecccc
Q 004294 121 KELSRELGLEPLQVKFWFQN 140 (763)
Q Consensus 121 ~~LA~~LgL~~rQVkvWFQN 140 (763)
.++|+.+|++++.++.|-++
T Consensus 4 ~EvA~~~gVs~~tLR~ye~~ 23 (99)
T cd04765 4 GEVAEILGLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 47899999999999999654
No 210
>PHA03155 hypothetical protein; Provisional
Probab=21.25 E-value=35 Score=32.52 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=19.5
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhH
Q 004294 189 IGEMSFDEHHLRLENARLREEIDR 212 (763)
Q Consensus 189 ~~~~~~e~~~L~~En~~Lk~el~r 212 (763)
.+++..+.++|+.||..||+.+.+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367788889999999999988753
No 211
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.13 E-value=1e+02 Score=36.50 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHh
Q 004294 154 NTQLRTENEKLRADNMRYREAL 175 (763)
Q Consensus 154 ~~~l~~ene~L~~en~~l~~a~ 175 (763)
.+.+-+|||.|+.||..|+..+
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 4566677888888888777765
No 212
>PRK01156 chromosome segregation protein; Provisional
Probab=20.96 E-value=2.3e+02 Score=35.59 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhc----CCCCCCCCCCCC
Q 004294 154 NTQLRTENEKLRADNMRYREALS----NASCPNCGGPTA 188 (763)
Q Consensus 154 ~~~l~~ene~L~~en~~l~~a~~----~~~C~~Cgg~~~ 188 (763)
-..++++...++..-..++++.. .+.||.|+.+..
T Consensus 425 i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~ 463 (895)
T PRK01156 425 VSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG 463 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Confidence 34444455555555555665433 567888887754
No 213
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=20.96 E-value=1.1e+02 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.4
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHhHHHHH
Q 004294 187 TAIGEMSFDEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 187 ~~~~~~~~e~~~L~~En~~Lk~el~r~~~~ 216 (763)
.+......+.+||+.|+..|+..+-.++..
T Consensus 4 ~v~~~~dydreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 4 VVVAQHDYDREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred eeecccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 344556789999999999999998888773
No 214
>PF14645 Chibby: Chibby family
Probab=20.78 E-value=2.7e+02 Score=26.63 Aligned_cols=28 Identities=32% Similarity=0.308 Sum_probs=13.8
Q ss_pred HHhHHHHhHHHHHHHHHHHHhHHHHHHH
Q 004294 147 TQHERHENTQLRTENEKLRADNMRYREA 174 (763)
Q Consensus 147 r~~~r~e~~~l~~ene~L~~en~~l~~a 174 (763)
.+..++++++|+.||.-|+-+++-|..-
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544443
No 215
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=20.63 E-value=2.1e+02 Score=29.04 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=36.7
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQ 139 (763)
+...+|+++++++.+.-.++ |..-.+..||+++|+++.-|.+=.+
T Consensus 82 k~y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~ 126 (164)
T PF12824_consen 82 KKYHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAP 126 (164)
T ss_pred ccccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcC
Confidence 34689999999999988877 5667889999999999877665553
No 216
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=20.52 E-value=54 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 119 QRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 119 ~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
...+||+.+|+++.++..|+.++..+..-.
T Consensus 12 t~~~La~~~gis~~tl~~~~~~~~~~~~~~ 41 (63)
T PF13443_consen 12 TQKDLARKTGISRSTLSRILNGKPSNPSLD 41 (63)
T ss_dssp -HHHHHHHHT--HHHHHHHHTTT-----HH
T ss_pred CHHHHHHHHCcCHHHHHHHHhcccccccHH
Confidence 466899999999999999998875555543
No 217
>PRK02224 chromosome segregation protein; Provisional
Probab=20.51 E-value=4.1e+02 Score=33.27 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=10.6
Q ss_pred cCCCCCCCCCCCCC
Q 004294 176 SNASCPNCGGPTAI 189 (763)
Q Consensus 176 ~~~~C~~Cgg~~~~ 189 (763)
....||.|+.+...
T Consensus 450 ~~~~Cp~C~r~~~~ 463 (880)
T PRK02224 450 EAGKCPECGQPVEG 463 (880)
T ss_pred hcccCCCCCCcCCC
Confidence 45789999987644
No 218
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.47 E-value=1.7e+02 Score=31.32 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHH---HHHHHHhHHHHHH
Q 004294 154 NTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENA---RLREEIDRISAIA 217 (763)
Q Consensus 154 ~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~---~Lk~el~r~~~~~ 217 (763)
.-..-..+.++++||++|++++ .+|+.+++ .|++|.+++..+.
T Consensus 64 ~~~~~~~~~~l~~en~~L~~e~---------------------~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 64 VFESLASLFDLREENEELKKEL---------------------LELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334456778888888887755 44555555 6677777777643
No 219
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.35 E-value=4.2e+02 Score=25.14 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhh-----hhHHHhHHHHhHHHHHHHHHHHH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT-----QMKTQHERHENTQLRTENEKLRA 166 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRa-----K~Kr~~~r~e~~~l~~ene~L~~ 166 (763)
..+..|+.+++..|... ...+.+|++-.+|+-++.-.+. ...+....+..+.++.+.+.|+.
T Consensus 34 ~g~R~Y~~~~l~~l~~I-------------~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (126)
T cd04785 34 GGYRLYGAAHVERLRFI-------------RRARDLGFSLEEIRALLALSDRPDRSCAEADAIARAHLADVRARIADLRR 100 (126)
T ss_pred CCccccCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999543 2355666666666666643221 11122223334445555555555
Q ss_pred hHHHHHHHh
Q 004294 167 DNMRYREAL 175 (763)
Q Consensus 167 en~~l~~a~ 175 (763)
....+....
T Consensus 101 ~~~~L~~~~ 109 (126)
T cd04785 101 LEAELKRMV 109 (126)
T ss_pred HHHHHHHHH
Confidence 555554433
No 220
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.13 E-value=4.2e+02 Score=24.44 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHH
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYR 172 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~ 172 (763)
.+..|+.+++..|.. ....+.+|++-.+++-.+...........-....+.+.++...+....+.+.
T Consensus 36 gyR~Y~~~~i~~l~~-------------I~~lr~~G~sl~~i~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (108)
T cd01107 36 GYRYYSAEQLERLNR-------------IKYLRDLGFPLEEIKEILDADNDDELRKLLREKLAELEAEIEELQRILRLLE 102 (108)
T ss_pred CccccCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999988843 2335667777777777776655422222233333444444444444433333
No 221
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.12 E-value=1.8e+02 Score=27.69 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=11.6
Q ss_pred chhhhHHHHHHHHHHHhH
Q 004294 195 DEHHLRLENARLREEIDR 212 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r 212 (763)
+...|+.||..||+.|..
T Consensus 37 EN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 37 ENTALRLENEKLRERLGE 54 (114)
T ss_pred hhHHHHhhHHHHHHHhCC
Confidence 445577777777776654
Done!