Query 004294
Match_columns 763
No_of_seqs 423 out of 1817
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 20:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.9E-19 6.5E-24 183.4 19.3 200 274-502 19-229 (231)
2 2kt0_A Nanog, homeobox protein 99.7 1.3E-17 4.6E-22 145.6 5.0 63 87-149 19-81 (84)
3 2dmt_A Homeobox protein BARH-l 99.7 1.5E-17 5.2E-22 144.2 5.1 63 87-149 14-76 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 1.7E-17 6E-22 143.3 4.9 62 88-149 15-76 (80)
5 3a01_A Homeodomain-containing 99.7 1.5E-17 5E-22 148.5 4.5 75 88-162 15-89 (93)
6 1nk2_P Homeobox protein VND; h 99.7 5.6E-17 1.9E-21 139.7 5.5 65 88-152 7-71 (77)
7 1wh5_A ZF-HD homeobox family p 99.7 4E-17 1.4E-21 142.0 4.6 60 88-147 15-78 (80)
8 1fjl_A Paired protein; DNA-bin 99.6 6.9E-17 2.3E-21 140.3 5.0 64 87-150 15-78 (81)
9 2vi6_A Homeobox protein nanog; 99.6 3.5E-17 1.2E-21 135.1 2.9 60 90-149 3-62 (62)
10 2cue_A Paired box protein PAX6 99.6 1.1E-16 3.6E-21 138.9 6.0 63 90-152 7-69 (80)
11 2dmq_A LIM/homeobox protein LH 99.6 7.4E-17 2.5E-21 139.6 4.2 63 90-152 7-69 (80)
12 2h1k_A IPF-1, pancreatic and d 99.6 7.9E-17 2.7E-21 133.5 4.1 60 90-149 3-62 (63)
13 1wh7_A ZF-HD homeobox family p 99.6 8.7E-17 3E-21 140.0 4.4 59 88-147 15-78 (80)
14 2cra_A Homeobox protein HOX-B1 99.6 8.2E-17 2.8E-21 136.1 3.7 60 90-149 7-66 (70)
15 2hdd_A Protein (engrailed home 99.6 8.8E-17 3E-21 132.3 3.6 58 90-147 3-60 (61)
16 1zq3_P PRD-4, homeotic bicoid 99.6 1.2E-16 4E-21 134.5 4.0 63 90-152 2-64 (68)
17 1puf_A HOX-1.7, homeobox prote 99.6 2.1E-16 7.2E-21 136.1 5.6 62 90-151 13-74 (77)
18 2dmu_A Homeobox protein goosec 99.6 1.6E-16 5.4E-21 134.3 4.7 60 90-149 7-66 (70)
19 2dms_A Homeobox protein OTX2; 99.6 1.6E-16 5.3E-21 137.8 4.6 62 89-150 6-67 (80)
20 1ig7_A Homeotic protein MSX-1; 99.6 1.6E-16 5.4E-21 129.3 4.3 57 91-147 1-57 (58)
21 2e1o_A Homeobox protein PRH; D 99.6 1.9E-16 6.5E-21 133.9 4.9 60 90-149 7-66 (70)
22 1ahd_P Antennapedia protein mu 99.6 1.4E-16 4.7E-21 134.1 3.9 60 90-149 2-61 (68)
23 2da2_A Alpha-fetoprotein enhan 99.6 1.3E-16 4.3E-21 134.8 3.6 61 89-149 6-66 (70)
24 1ftt_A TTF-1 HD, thyroid trans 99.6 7.5E-17 2.6E-21 135.7 2.0 61 90-150 2-62 (68)
25 1bw5_A ISL-1HD, insulin gene e 99.6 1E-16 3.5E-21 133.9 2.8 61 89-149 2-62 (66)
26 2djn_A Homeobox protein DLX-5; 99.6 1.5E-16 5E-21 134.6 3.3 60 90-149 7-66 (70)
27 2da1_A Alpha-fetoprotein enhan 99.6 1.7E-16 5.7E-21 134.0 3.6 60 90-149 7-66 (70)
28 1yz8_P Pituitary homeobox 2; D 99.6 1.1E-16 3.9E-21 134.5 2.3 62 89-150 2-63 (68)
29 1jgg_A Segmentation protein EV 99.6 2.2E-16 7.4E-21 129.5 3.8 58 91-148 2-59 (60)
30 2l7z_A Homeobox protein HOX-A1 99.6 3.1E-16 1.1E-20 133.8 4.6 61 89-149 6-66 (73)
31 2da4_A Hypothetical protein DK 99.6 2E-16 6.7E-21 137.1 3.3 60 89-148 7-70 (80)
32 1akh_A Protein (mating-type pr 99.6 2.2E-16 7.5E-21 129.7 2.9 59 88-146 3-61 (61)
33 1b8i_A Ultrabithorax, protein 99.6 2.4E-16 8.1E-21 137.2 3.2 60 90-149 20-79 (81)
34 2m0c_A Homeobox protein arista 99.6 3.6E-16 1.2E-20 133.3 4.2 62 88-149 7-68 (75)
35 3rkq_A Homeobox protein NKX-2. 99.6 3.9E-16 1.3E-20 126.5 3.9 57 90-146 2-58 (58)
36 3nar_A ZHX1, zinc fingers and 99.6 4.3E-16 1.5E-20 139.7 4.2 64 89-152 24-87 (96)
37 3a02_A Homeobox protein arista 99.6 3.4E-16 1.2E-20 128.3 3.1 57 93-149 2-58 (60)
38 1uhs_A HOP, homeodomain only p 99.6 6.4E-16 2.2E-20 131.3 4.8 59 91-149 2-61 (72)
39 2r5y_A Homeotic protein sex co 99.6 2.9E-16 1E-20 138.5 2.8 60 90-149 28-87 (88)
40 2k40_A Homeobox expressed in E 99.6 2.3E-16 7.9E-21 132.1 2.0 60 91-150 2-61 (67)
41 2hi3_A Homeodomain-only protei 99.6 7.9E-16 2.7E-20 131.2 4.8 59 91-149 3-62 (73)
42 3a03_A T-cell leukemia homeobo 99.6 5.6E-16 1.9E-20 125.5 3.7 54 95-148 2-55 (56)
43 2ecc_A Homeobox and leucine zi 99.6 9.3E-16 3.2E-20 132.1 3.8 58 93-150 6-63 (76)
44 1b72_A Protein (homeobox prote 99.6 1.1E-15 3.9E-20 137.1 4.0 60 90-149 34-93 (97)
45 2ly9_A Zinc fingers and homeob 99.6 1.1E-15 3.9E-20 130.2 3.8 60 90-149 6-65 (74)
46 2da5_A Zinc fingers and homeob 99.6 1.1E-15 3.8E-20 131.0 3.8 59 92-150 9-67 (75)
47 2dn0_A Zinc fingers and homeob 99.5 1.2E-15 4.3E-20 130.9 3.3 59 91-149 9-67 (76)
48 2cuf_A FLJ21616 protein; homeo 99.5 1.9E-15 6.7E-20 135.1 4.6 62 89-150 6-82 (95)
49 1x2n_A Homeobox protein pknox1 99.5 3.1E-15 1.1E-19 127.3 4.9 61 89-149 6-69 (73)
50 1puf_B PRE-B-cell leukemia tra 99.5 2E-15 6.8E-20 128.5 3.5 61 91-151 2-65 (73)
51 2ecb_A Zinc fingers and homeob 99.5 9.8E-16 3.3E-20 135.9 1.5 56 95-150 16-71 (89)
52 1e3o_C Octamer-binding transcr 99.5 1.8E-15 6.1E-20 147.7 2.8 61 88-148 99-159 (160)
53 1du6_A PBX1, homeobox protein 99.5 2.2E-15 7.4E-20 125.0 2.7 58 90-147 3-63 (64)
54 1b72_B Protein (PBX1); homeodo 99.5 3.5E-15 1.2E-19 131.0 4.0 61 91-151 2-65 (87)
55 1au7_A Protein PIT-1, GHF-1; c 99.5 2.3E-15 7.9E-20 144.9 3.1 61 88-148 85-145 (146)
56 2cqx_A LAG1 longevity assuranc 99.5 1.9E-15 6.4E-20 128.9 1.5 58 91-148 9-67 (72)
57 1k61_A Mating-type protein alp 99.5 4.5E-15 1.5E-19 121.6 3.6 56 93-148 1-59 (60)
58 2dmp_A Zinc fingers and homeob 99.5 8.1E-15 2.8E-19 129.8 5.1 57 94-150 17-73 (89)
59 2dmn_A Homeobox protein TGIF2L 99.5 4.9E-15 1.7E-19 129.5 3.5 62 89-150 6-70 (83)
60 2da6_A Hepatocyte nuclear fact 99.5 1.4E-14 4.7E-19 131.2 5.9 63 88-150 4-87 (102)
61 1le8_B Mating-type protein alp 99.5 4.1E-15 1.4E-19 129.9 2.2 59 91-149 3-64 (83)
62 1mnm_C Protein (MAT alpha-2 tr 99.5 8.4E-15 2.9E-19 128.9 4.2 58 90-147 27-87 (87)
63 2xsd_C POU domain, class 3, tr 99.5 4.2E-15 1.4E-19 145.7 1.9 64 87-150 96-159 (164)
64 1lfb_A Liver transcription fac 99.5 4.8E-15 1.7E-19 133.9 1.8 65 87-151 6-91 (99)
65 2l9r_A Homeobox protein NKX-3. 99.5 3.3E-15 1.1E-19 126.6 0.3 56 95-150 9-64 (69)
66 3d1n_I POU domain, class 6, tr 99.5 1.7E-14 5.9E-19 139.3 4.5 60 88-147 91-150 (151)
67 3nau_A Zinc fingers and homeob 99.5 1.6E-14 5.4E-19 120.8 3.3 53 97-149 11-63 (66)
68 1x2m_A LAG1 longevity assuranc 99.5 1.2E-14 4.2E-19 121.2 1.8 49 99-147 9-58 (64)
69 1wi3_A DNA-binding protein SAT 99.4 2.9E-14 9.9E-19 119.4 3.9 58 89-146 6-64 (71)
70 2e19_A Transcription factor 8; 99.4 2.1E-14 7E-19 119.8 2.3 53 95-147 8-60 (64)
71 3l1p_A POU domain, class 5, tr 99.4 3.6E-14 1.2E-18 137.8 3.4 60 89-148 95-154 (155)
72 2d5v_A Hepatocyte nuclear fact 99.4 4.9E-14 1.7E-18 137.7 2.7 62 88-149 95-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 1.3E-13 4.5E-18 115.8 2.6 59 96-154 4-65 (67)
74 1ic8_A Hepatocyte nuclear fact 99.2 7.5E-13 2.6E-17 133.0 0.8 61 87-147 112-193 (194)
75 3p0l_A Steroidogenic acute reg 99.2 8.6E-11 2.9E-15 118.9 15.2 192 277-500 10-213 (221)
76 1em2_A MLN64 protein; beta bar 99.2 2.9E-10 1E-14 115.5 17.4 194 276-502 20-226 (229)
77 2pso_A STAR-related lipid tran 99.2 3.6E-11 1.2E-15 123.8 9.5 189 282-500 33-226 (237)
78 2lk2_A Homeobox protein TGIF1; 99.1 1.7E-11 5.7E-16 108.5 3.7 59 94-152 9-70 (89)
79 2h8r_A Hepatocyte nuclear fact 99.1 2.5E-11 8.6E-16 123.5 2.8 60 87-146 139-219 (221)
80 2da7_A Zinc finger homeobox pr 99.0 6.1E-11 2.1E-15 100.0 2.7 46 99-144 14-59 (71)
81 1ln1_A PC-TP, phosphatidylchol 99.0 4.8E-09 1.6E-13 104.8 14.4 147 336-501 53-209 (214)
82 1mh3_A Maltose binding-A1 home 99.0 6.2E-11 2.1E-15 128.8 0.3 56 91-146 366-421 (421)
83 1jss_A Stard4, cholesterol-reg 99.0 5.7E-09 2E-13 105.9 14.7 192 277-500 24-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 7.3E-08 2.5E-12 100.8 13.0 126 338-479 91-226 (258)
85 3qsz_A STAR-related lipid tran 98.6 5.1E-07 1.8E-11 88.5 14.4 151 336-502 28-180 (189)
86 2nzz_A Penetratin conjugated G 98.5 1.5E-08 5E-13 75.5 -0.8 22 132-153 1-22 (37)
87 2e3n_A Lipid-transfer protein 98.4 3.6E-06 1.2E-10 86.7 13.8 149 337-502 75-247 (255)
88 2r55_A STAR-related lipid tran 96.7 0.024 8.3E-07 57.0 15.0 201 522-759 19-227 (231)
89 1jss_A Stard4, cholesterol-reg 95.8 0.042 1.4E-06 55.2 10.5 174 547-759 42-222 (224)
90 3qsz_A STAR-related lipid tran 95.7 0.11 3.9E-06 50.3 12.8 172 548-759 3-178 (189)
91 2d4r_A Hypothetical protein TT 95.5 0.13 4.3E-06 45.9 11.7 140 339-502 6-145 (147)
92 2pso_A STAR-related lipid tran 95.4 0.22 7.4E-06 50.8 14.4 175 546-760 48-227 (237)
93 3p0l_A Steroidogenic acute reg 95.4 0.4 1.4E-05 47.8 15.9 197 524-759 9-213 (221)
94 1em2_A MLN64 protein; beta bar 95.1 0.18 6.1E-06 50.6 12.6 197 525-759 21-224 (229)
95 1ln1_A PC-TP, phosphatidylchol 94.3 0.32 1.1E-05 47.8 11.9 174 546-759 26-208 (214)
96 3fo5_A Thioesterase, adipose a 93.1 0.69 2.4E-05 48.1 12.2 198 487-726 9-215 (258)
97 3tfz_A Cyclase; helix-GRIP, BE 90.9 4.1 0.00014 38.7 14.0 147 338-506 8-164 (172)
98 3tvq_A Multifunctional cyclase 90.4 6.2 0.00021 38.0 14.9 144 338-506 6-151 (169)
99 1t17_A Conserved hypothetical 89.7 1.6 5.6E-05 40.1 9.7 141 338-502 5-145 (148)
100 2ys9_A Homeobox and leucine zi 87.0 0.24 8.3E-06 41.7 1.8 39 101-139 17-55 (70)
101 2jn6_A Protein CGL2762, transp 85.3 0.11 3.6E-06 45.3 -1.3 43 95-140 4-46 (97)
102 3p9v_A Uncharacterized protein 85.0 16 0.00056 34.2 13.9 136 338-495 10-145 (161)
103 3tl1_A WHIE ORF VI, polyketide 84.7 27 0.00093 33.0 15.9 143 338-505 6-150 (159)
104 1ci6_A Transcription factor AT 82.1 3.3 0.00011 34.0 6.6 40 151-211 22-61 (63)
105 2jee_A YIIU; FTSZ, septum, coi 80.5 1.9 6.4E-05 37.4 4.7 24 196-219 50-77 (81)
106 1t2k_D Cyclic-AMP-dependent tr 80.0 4.4 0.00015 32.8 6.6 39 151-210 21-59 (61)
107 1hjb_A Ccaat/enhancer binding 78.3 4.4 0.00015 35.5 6.4 29 142-173 29-57 (87)
108 2wt7_B Transcription factor MA 76.8 5.4 0.00018 35.2 6.5 67 128-215 17-83 (90)
109 2e3n_A Lipid-transfer protein 72.4 3.2 0.00011 42.1 4.7 199 527-758 28-244 (255)
110 1jnm_A Proto-oncogene C-JUN; B 71.0 4.6 0.00016 32.8 4.4 23 151-173 21-43 (62)
111 2wt7_A Proto-oncogene protein 69.8 12 0.00041 30.5 6.7 24 151-174 22-45 (63)
112 1gu4_A CAAT/enhancer binding p 68.0 8.9 0.0003 32.9 5.7 27 142-171 29-55 (78)
113 1l8d_A DNA double-strand break 66.0 6.7 0.00023 35.0 4.9 11 177-187 47-57 (112)
114 3m91_A Proteasome-associated A 64.3 17 0.00057 28.8 6.1 39 155-214 12-50 (51)
115 2j5u_A MREC protein; bacterial 63.7 4.4 0.00015 41.9 3.6 15 197-211 46-60 (255)
116 2dgc_A Protein (GCN4); basic d 58.5 14 0.00048 30.3 5.0 16 199-214 42-57 (63)
117 3s9g_A Protein hexim1; cyclin 56.2 3.5 0.00012 36.8 1.1 56 149-211 34-89 (104)
118 1gd2_E Transcription factor PA 55.7 21 0.0007 30.0 5.7 20 151-170 28-47 (70)
119 3he5_B Synzip2; heterodimeric 54.3 33 0.0011 26.2 5.9 22 195-216 25-46 (52)
120 3ra3_B P2F; coiled coil domain 49.6 11 0.00036 25.6 2.3 18 197-214 3-20 (28)
121 2pcs_A Conserved protein; stru 49.2 1.5E+02 0.0052 26.8 15.7 119 340-481 8-128 (162)
122 2glo_A Brinker CG9653-PA; prot 47.4 7.9 0.00027 30.4 1.8 45 94-139 3-47 (59)
123 3p51_A Uncharacterized protein 46.7 1.1E+02 0.0038 28.7 10.2 112 339-469 6-118 (160)
124 2qpv_A Uncharacterized protein 45.5 12 0.00041 35.6 3.1 31 580-610 27-57 (156)
125 2yy0_A C-MYC-binding protein; 44.3 29 0.00099 27.5 4.6 17 195-211 20-36 (53)
126 3m9b_A Proteasome-associated A 43.7 25 0.00084 36.4 5.2 38 157-215 59-96 (251)
127 1hlv_A CENP-B, major centromer 42.8 16 0.00056 32.7 3.4 48 93-143 4-51 (131)
128 2elh_A CG11849-PA, LD40883P; s 42.8 12 0.0004 31.8 2.3 43 91-138 17-59 (87)
129 3a5t_A Transcription factor MA 39.3 2.8 9.7E-05 38.1 -2.3 67 128-215 27-93 (107)
130 1hjb_A Ccaat/enhancer binding 37.6 52 0.0018 28.7 5.6 22 195-216 51-72 (87)
131 1uii_A Geminin; human, DNA rep 36.1 86 0.0029 27.2 6.5 22 197-218 56-77 (83)
132 3f08_A Uncharacterized protein 36.0 2.6E+02 0.0087 25.6 10.9 113 339-485 6-130 (146)
133 1t6f_A Geminin; coiled-coil, c 35.9 43 0.0015 24.6 3.9 11 197-207 24-34 (37)
134 2d4r_A Hypothetical protein TT 35.9 14 0.00047 32.3 1.7 28 582-609 4-31 (147)
135 1jko_C HIN recombinase, DNA-in 35.8 13 0.00044 27.2 1.3 42 96-142 5-46 (52)
136 1go4_E MAD1 (mitotic arrest de 35.6 1.1E+02 0.0038 27.3 7.5 69 151-219 18-93 (100)
137 3hug_A RNA polymerase sigma fa 32.1 23 0.00077 30.0 2.4 48 96-148 37-84 (92)
138 2ns9_A Hypothetical protein AP 31.6 17 0.00057 33.0 1.5 30 580-609 13-42 (157)
139 2j5u_A MREC protein; bacterial 31.6 23 0.00077 36.5 2.7 18 200-217 42-59 (255)
140 2pcs_A Conserved protein; stru 31.2 15 0.0005 33.9 1.1 28 582-609 5-32 (162)
141 1t17_A Conserved hypothetical 30.8 24 0.00083 32.0 2.5 28 583-610 5-32 (148)
142 3m48_A General control protein 30.7 39 0.0013 24.4 2.9 23 195-217 8-30 (33)
143 1deb_A APC protein, adenomatou 30.4 39 0.0013 26.6 3.1 26 195-220 11-36 (54)
144 1tc3_C Protein (TC3 transposas 30.2 28 0.00097 24.7 2.4 40 96-140 5-44 (51)
145 2dfs_A Myosin-5A; myosin-V, in 30.2 32 0.0011 42.5 4.1 61 145-215 984-1044(1080)
146 1s7o_A Hypothetical UPF0122 pr 30.0 50 0.0017 29.6 4.4 49 96-149 22-70 (113)
147 3ggn_A Uncharacterized protein 29.9 3.2E+02 0.011 24.8 12.0 138 339-508 8-146 (155)
148 3oja_A Leucine-rich immune mol 29.2 1E+02 0.0035 33.9 7.7 23 193-215 441-463 (487)
149 3ggn_A Uncharacterized protein 29.0 24 0.00083 32.6 2.2 29 581-609 5-33 (155)
150 1wlq_A Geminin; coiled-coil; 2 28.4 1.6E+02 0.0054 25.5 6.9 12 159-170 38-49 (83)
151 2leq_A Uncharacterized protein 28.0 31 0.001 30.5 2.6 28 581-608 6-33 (146)
152 1xsv_A Hypothetical UPF0122 pr 27.8 56 0.0019 29.1 4.3 51 96-151 25-75 (113)
153 1gu4_A CAAT/enhancer binding p 27.5 2.4E+02 0.008 24.0 7.9 20 197-216 46-65 (78)
154 3q6a_A Uncharacterized protein 27.2 33 0.0011 30.6 2.8 27 583-609 4-30 (135)
155 3iv1_A Tumor susceptibility ge 26.2 76 0.0026 27.2 4.5 36 140-175 13-48 (78)
156 1dh3_A Transcription factor CR 25.6 74 0.0025 25.2 4.1 20 196-215 31-50 (55)
157 3oja_B Anopheles plasmodium-re 25.4 1.1E+02 0.0036 34.4 7.1 21 195-215 559-579 (597)
158 2zxx_A Geminin; coiled-coil, c 24.4 1.7E+02 0.0058 25.1 6.4 20 197-216 51-70 (79)
159 3hnw_A Uncharacterized protein 24.1 1E+02 0.0036 28.8 5.6 21 195-215 111-131 (138)
160 1x53_A Activator of 90 kDa hea 23.1 38 0.0013 30.7 2.3 28 582-609 13-40 (145)
161 2rgt_A Fusion of LIM/homeobox 22.6 3.2 0.00011 39.7 -5.3 29 90-118 136-164 (169)
162 2le1_A Uncharacterized protein 22.4 4.1E+02 0.014 23.6 11.9 47 340-392 7-53 (151)
163 3a2a_A Voltage-gated hydrogen 22.1 1.6E+02 0.0055 23.6 5.3 24 196-219 27-50 (58)
164 3lph_A Protein REV; helix-loop 22.0 44 0.0015 28.2 2.2 36 102-151 18-53 (72)
165 3tfz_A Cyclase; helix-GRIP, BE 22.0 42 0.0014 31.6 2.4 29 581-609 6-34 (172)
166 2wvr_A Geminin; DNA replicatio 21.6 2E+02 0.0069 28.8 7.2 31 197-227 132-165 (209)
167 3m9b_A Proteasome-associated A 21.3 93 0.0032 32.2 4.9 24 151-174 60-83 (251)
168 2oa5_A Hypothetical protein BQ 21.1 14 0.00049 33.5 -0.9 29 184-212 5-33 (110)
169 1xn6_A Hypothetical protein BC 21.1 35 0.0012 30.7 1.6 27 583-609 11-37 (143)
170 2o8x_A Probable RNA polymerase 21.1 32 0.0011 26.9 1.2 47 96-147 15-61 (70)
171 3a5t_A Transcription factor MA 21.0 70 0.0024 29.0 3.5 22 195-216 80-101 (107)
172 2le1_A Uncharacterized protein 20.8 56 0.0019 29.6 3.0 28 582-609 4-31 (151)
173 1gd2_E Transcription factor PA 20.8 2.9E+02 0.0099 23.0 7.0 16 199-214 48-63 (70)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=183.36 Aligned_cols=200 Identities=15% Similarity=0.211 Sum_probs=156.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHH
Q 004294 274 ADKPMIIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEI 353 (763)
Q Consensus 274 ~~~~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~ 353 (763)
.+++.++++|++||+||+++++.+ ..|....+. ++.+.|.+.. .+....+.|..|+|.+++.+|++.
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~--------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~ 85 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRDT-AGWKICREG--------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDC 85 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEECC--------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeC--------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHH
Confidence 368899999999999999999754 789875431 2233443211 122347889999999999999999
Q ss_pred hcC-----hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeeh-hhhcCCCCccCceeEEEEeeeeeCCceEEEEEE
Q 004294 354 LMD-----VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTA-EFQVPSPLVPTRESYYVRYCKQHGEGTWAVVDV 427 (763)
Q Consensus 354 lmD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~a-El~v~SpLvp~Re~~fLRyckq~~~g~w~VvDv 427 (763)
||+ +.+|-..|. .++.++.|+. + -.++|. ....++++|++|||.++||+++.++|.|+|+.+
T Consensus 86 l~~~d~~~r~~Wd~~~~----~~~vle~i~~------~--~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 86 VKPAVGGLRVKWDENVT----GFEIIQSITD------T--LCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp HCC--CCSHHHHCTTCS----EEEEEEECSS------S--EEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHhhCcchhhhhccccc----eeEEEEEcCC------C--EEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 977 899988774 5566776651 1 233442 223455799999999999999999999999999
Q ss_pred ecCCCC-C--CCCceeeecCccceEEecC--CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004294 428 SLDNLR-P--SPAVRCRRRPSGCLIQEMP--NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (763)
Q Consensus 428 S~d~~~-~--~~~~~~~~lPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqcerl 502 (763)
|++.-. | ..++|++.++|||+||+++ +|.|+|||+.|++..-+ +| +.++++.++.++..|++.|+++|+.+
T Consensus 154 Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 154 HVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp ECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred eccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 998432 1 2679999999999999998 78999999999998875 55 67899999999999999999999753
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=145.57 Aligned_cols=63 Identities=30% Similarity=0.314 Sum_probs=59.1
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.+++||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344678899999999999999999999999999999999999999999999999999999864
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=144.22 Aligned_cols=63 Identities=29% Similarity=0.440 Sum_probs=58.7
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
..++||.|+.||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 344578899999999999999999999999999999999999999999999999999999853
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=143.31 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=58.5
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.++||.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34578899999999999999999999999999999999999999999999999999999854
No 5
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=1.5e-17 Score=148.54 Aligned_cols=75 Identities=31% Similarity=0.474 Sum_probs=61.4
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHhHHHHHHHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENE 162 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene 162 (763)
+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..+.+...+++.+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999999999999999999999999999999877666665555543
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.66 E-value=5.6e-17 Score=139.67 Aligned_cols=65 Identities=32% Similarity=0.467 Sum_probs=60.1
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
++++|.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+.+...
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 34577899999999999999999999999999999999999999999999999999999876544
No 7
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=4e-17 Score=141.97 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=56.8
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKE----CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~----~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
.++||.|+.||.+|+..||..|+. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345788999999999999999999 999999999999999999999999999999999985
No 8
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.65 E-value=6.9e-17 Score=140.32 Aligned_cols=64 Identities=27% Similarity=0.568 Sum_probs=58.7
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
++++||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3446788999999999999999999999999999999999999999999999999999998653
No 9
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=3.5e-17 Score=135.13 Aligned_cols=60 Identities=33% Similarity=0.360 Sum_probs=53.7
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
++|.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 578899999999999999999999999999999999999999999999999999999864
No 10
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=138.92 Aligned_cols=63 Identities=24% Similarity=0.470 Sum_probs=59.0
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
+||.|+.||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|++++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 478899999999999999999999999999999999999999999999999999999975543
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-17 Score=139.58 Aligned_cols=63 Identities=29% Similarity=0.550 Sum_probs=59.1
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999975543
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.64 E-value=7.9e-17 Score=133.50 Aligned_cols=60 Identities=30% Similarity=0.398 Sum_probs=56.1
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 478899999999999999999999999999999999999999999999999999999853
No 13
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=8.7e-17 Score=139.96 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=55.6
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKE-----CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~-----~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
+++||.|+.||.+|+..|| .|.. ++||+..+|.+||.+|||+++||||||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4468889999999999999 7999 999999999999999999999999999999999985
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=8.2e-17 Score=136.08 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=57.3
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 477889999999999999999999999999999999999999999999999999999854
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.63 E-value=8.8e-17 Score=132.28 Aligned_cols=58 Identities=33% Similarity=0.606 Sum_probs=53.3
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999997
No 16
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=134.48 Aligned_cols=63 Identities=32% Similarity=0.497 Sum_probs=59.0
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
.||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 478899999999999999999999999999999999999999999999999999999976543
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.62 E-value=2.1e-16 Score=136.07 Aligned_cols=62 Identities=35% Similarity=0.449 Sum_probs=58.6
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
.+|.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 47788999999999999999999999999999999999999999999999999999997643
No 18
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=134.25 Aligned_cols=60 Identities=27% Similarity=0.551 Sum_probs=57.3
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 477889999999999999999999999999999999999999999999999999999854
No 19
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.6e-16 Score=137.76 Aligned_cols=62 Identities=26% Similarity=0.514 Sum_probs=58.5
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
++||.|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 35788999999999999999999999999999999999999999999999999999998654
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.6e-16 Score=129.26 Aligned_cols=57 Identities=33% Similarity=0.471 Sum_probs=55.1
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999997
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.9e-16 Score=133.87 Aligned_cols=60 Identities=32% Similarity=0.416 Sum_probs=57.0
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.+|+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 467889999999999999999999999999999999999999999999999999999853
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.62 E-value=1.4e-16 Score=134.14 Aligned_cols=60 Identities=30% Similarity=0.448 Sum_probs=57.6
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 478899999999999999999999999999999999999999999999999999999864
No 23
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=134.76 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=57.7
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
++||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3578899999999999999999999999999999999999999999999999999999854
No 24
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=7.5e-17 Score=135.67 Aligned_cols=61 Identities=38% Similarity=0.551 Sum_probs=58.2
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+||.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999998654
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.62 E-value=1e-16 Score=133.88 Aligned_cols=61 Identities=25% Similarity=0.507 Sum_probs=57.8
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
++||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3578899999999999999999999999999999999999999999999999999999853
No 26
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=134.56 Aligned_cols=60 Identities=32% Similarity=0.474 Sum_probs=57.2
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 478899999999999999999999999999999999999999999999999999999853
No 27
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=133.98 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=57.4
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 578899999999999999999999999999999999999999999999999999999854
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.61 E-value=1.1e-16 Score=134.49 Aligned_cols=62 Identities=27% Similarity=0.543 Sum_probs=58.5
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
++||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 35788999999999999999999999999999999999999999999999999999998654
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.61 E-value=2.2e-16 Score=129.53 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=55.3
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999984
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.60 E-value=3.1e-16 Score=133.78 Aligned_cols=61 Identities=26% Similarity=0.395 Sum_probs=57.8
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+.||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3578899999999999999999999999999999999999999999999999999999854
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2e-16 Score=137.12 Aligned_cols=60 Identities=10% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKEC----PHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~----~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
++||.|+.||.+|+..||..|+.+ +||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 357889999999999999999999 999999999999999999999999999999999984
No 32
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.60 E-value=2.2e-16 Score=129.71 Aligned_cols=59 Identities=27% Similarity=0.499 Sum_probs=48.6
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (763)
.+++|.|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 34578899999999999999999999999999999999999999999999999999986
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.60 E-value=2.4e-16 Score=137.15 Aligned_cols=60 Identities=28% Similarity=0.468 Sum_probs=54.6
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||+.
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 477899999999999999999999999999999999999999999999999999999864
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-16 Score=133.33 Aligned_cols=62 Identities=27% Similarity=0.516 Sum_probs=58.4
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
++++|.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999854
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.59 E-value=3.9e-16 Score=126.49 Aligned_cols=57 Identities=35% Similarity=0.488 Sum_probs=54.7
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (763)
+||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467889999999999999999999999999999999999999999999999999986
No 36
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.59 E-value=4.3e-16 Score=139.69 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=57.8
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
..+|+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++.+.
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3467889999999999999999999999999999999999999999999999999999976443
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.59 E-value=3.4e-16 Score=128.33 Aligned_cols=57 Identities=32% Similarity=0.567 Sum_probs=50.7
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=6.4e-16 Score=131.30 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCCcCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 91 KKRYHRHTQHQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~-~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467889999999999999996 99999999999999999999999999999999999854
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.59 E-value=2.9e-16 Score=138.49 Aligned_cols=60 Identities=32% Similarity=0.466 Sum_probs=55.3
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.||.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 477899999999999999999999999999999999999999999999999999999853
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-16 Score=132.12 Aligned_cols=60 Identities=30% Similarity=0.533 Sum_probs=57.2
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678899999999999999999999999999999999999999999999999999998654
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=7.9e-16 Score=131.17 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=55.8
Q ss_pred CCCCCcCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 91 KKRYHRHTQHQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~-~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999854
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.58 E-value=5.6e-16 Score=125.51 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=51.1
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
+.||.+|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=9.3e-16 Score=132.09 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=54.1
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+|.+||.+|+.+||+.|..++||+..+|.+||+++||+++||++||||||+|+|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999999998643
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.1e-15 Score=137.14 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=55.5
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.+|.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 477899999999999999999999999999999999999999999999999999999864
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=130.23 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=57.1
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.++.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 367889999999999999999999999999999999999999999999999999999864
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=131.02 Aligned_cols=59 Identities=20% Similarity=0.509 Sum_probs=55.0
Q ss_pred CCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 92 KRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 92 R~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 34567999999999999999999999999999999999999999999999999998653
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=130.91 Aligned_cols=59 Identities=17% Similarity=0.405 Sum_probs=55.7
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
++.|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44578899999999999999999999999999999999999999999999999999854
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.9e-15 Score=135.12 Aligned_cols=62 Identities=24% Similarity=0.513 Sum_probs=58.7
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCCcceeecccchhhhhHHHhH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG---------------LEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~Lg---------------L~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|+++.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999 9999999999999999998654
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.1e-15 Score=127.32 Aligned_cols=61 Identities=23% Similarity=0.440 Sum_probs=57.0
Q ss_pred CCCCCCCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+.|++|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34778899999999999999987 99999999999999999999999999999999999864
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.54 E-value=2e-15 Score=128.51 Aligned_cols=61 Identities=23% Similarity=0.534 Sum_probs=57.4
Q ss_pred CCCCCcCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 91 KKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F---~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
||+|++||.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+|++..+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778999999999999999 899999999999999999999999999999999999986544
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=9.8e-16 Score=135.90 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=53.2
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
.+||.+|+.+||+.|..++||+..+|.+||..|||+++||++||||||+|||++.+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999998543
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.53 E-value=1.8e-15 Score=147.65 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=54.9
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4568889999999999999999999999999999999999999999999999999999984
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=2.2e-15 Score=125.02 Aligned_cols=58 Identities=24% Similarity=0.483 Sum_probs=55.5
Q ss_pred CCCCCCcCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F---~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
.+++|++||.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 89999999999999999999999999999999999986
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.52 E-value=3.5e-15 Score=131.03 Aligned_cols=61 Identities=23% Similarity=0.534 Sum_probs=56.7
Q ss_pred CCCCCcCChHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 91 KKRYHRHTQHQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F---~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778999999999999999 899999999999999999999999999999999999986543
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.52 E-value=2.3e-15 Score=144.87 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=55.7
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4457789999999999999999999999999999999999999999999999999999985
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=1.9e-15 Score=128.92 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=54.1
Q ss_pred CCCCCcCChHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 91 KKRYHRHTQHQIQEMEAFF-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F-~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
.+.+.+++.+|+..||..| ..++||+..+|.+||+++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4556678999999999999 999999999999999999999999999999999999974
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.51 E-value=4.5e-15 Score=121.57 Aligned_cols=56 Identities=32% Similarity=0.545 Sum_probs=53.3
Q ss_pred CCCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 93 RYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
+|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3578999999999999999 9999999999999999999999999999999999973
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-15 Score=129.83 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=53.2
Q ss_pred CCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 94 RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
+.+||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 345999999999999999999999999999999999999999999999999998543
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-15 Score=129.52 Aligned_cols=62 Identities=21% Similarity=0.368 Sum_probs=57.2
Q ss_pred CCCCCCCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 35778899999999999999988 599999999999999999999999999999999998543
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=131.25 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=58.6
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------------------CCCCcceeecccchhhhhH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSREL---------------------GLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~L---------------------gL~~rQVkvWFQNRRaK~K 146 (763)
+++||.|+.|++.|+.+||..|+.++||+..+|++||.+| +|++.+|++||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3468889999999999999999999999999999999999 7999999999999999999
Q ss_pred HHhH
Q 004294 147 TQHE 150 (763)
Q Consensus 147 r~~~ 150 (763)
++++
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8654
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.50 E-value=4.1e-15 Score=129.90 Aligned_cols=59 Identities=29% Similarity=0.479 Sum_probs=54.4
Q ss_pred CCCCCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 91 KKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 456677999999999999999 99999999999999999999999999999999999854
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.49 E-value=8.4e-15 Score=128.89 Aligned_cols=58 Identities=33% Similarity=0.540 Sum_probs=55.0
Q ss_pred CCCCCCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
++|+|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4667899999999999999999 999999999999999999999999999999999983
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.49 E-value=4.2e-15 Score=145.73 Aligned_cols=64 Identities=27% Similarity=0.458 Sum_probs=52.4
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
.+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3446788999999999999999999999999999999999999999999999999999999654
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.48 E-value=4.8e-15 Score=133.93 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------hC---CCCcceeecccchhhhh
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRE------------------LG---LEPLQVKFWFQNKRTQM 145 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~------------------Lg---L~~rQVkvWFQNRRaK~ 145 (763)
++++||.|+.||++|+..||..|+.++||+..+|++||.+ || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4456888999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHhHH
Q 004294 146 KTQHER 151 (763)
Q Consensus 146 Kr~~~r 151 (763)
|+++..
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 886643
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-15 Score=126.58 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=53.1
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhH
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHE 150 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~ 150 (763)
..+|..|+..||..|+.++||+..+|.+||+++||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999998654
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.47 E-value=1.7e-14 Score=139.34 Aligned_cols=60 Identities=30% Similarity=0.643 Sum_probs=57.1
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345788999999999999999999999999999999999999999999999999999986
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=120.84 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 97 HTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 97 fT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
-|.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999743
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=1.2e-14 Score=121.24 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=46.4
Q ss_pred hHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 99 QHQIQEMEAFF-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 99 ~eQl~~LE~~F-~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
++|+.+||+.| ..++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 56899999999 67999999999999999999999999999999999986
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.9e-14 Score=119.43 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=54.3
Q ss_pred CCCCCCCcCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~-~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (763)
++||.|+.|+.+|+..|+..|+. ++||+.+.|+.||.++||++++|++||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 35888999999999999999999 99999999999999999999999999999997544
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-14 Score=119.84 Aligned_cols=53 Identities=13% Similarity=0.309 Sum_probs=50.1
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
..++.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34678999999999999999999999999999999999999999999999886
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.43 E-value=3.6e-14 Score=137.78 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.6
Q ss_pred CCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 89 NKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 89 kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
++||+|++||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 357789999999999999999999999999999999999999999999999999999973
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.40 E-value=4.9e-14 Score=137.68 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=54.9
Q ss_pred CCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 88 PNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 88 ~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
+++||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 34578899999999999999999999999999999999999999999999999999999854
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=1.3e-13 Score=115.83 Aligned_cols=59 Identities=29% Similarity=0.475 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHHHh
Q 004294 96 RHTQHQIQEMEAFFK---ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHEN 154 (763)
Q Consensus 96 rfT~eQl~~LE~~F~---~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~e~ 154 (763)
+|+.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987665543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.25 E-value=7.5e-13 Score=132.97 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=53.9
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCCcceeecccchhhhh
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG---------------------LEPLQVKFWFQNKRTQM 145 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~Lg---------------------L~~rQVkvWFQNRRaK~ 145 (763)
.+++||.|+.|++.|+..||+.|..++||+..+|++||..++ |++.||++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 345688899999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 004294 146 KT 147 (763)
Q Consensus 146 Kr 147 (763)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 75
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.24 E-value=8.6e-11 Score=118.91 Aligned_cols=192 Identities=16% Similarity=0.251 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeecC-C-CCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHh
Q 004294 277 PMIIELAVAAMEELIRMAQMGEPLWMTSL-D-GTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEIL 354 (763)
Q Consensus 277 ~~~~~lA~~Am~El~~la~~~eplWi~~~-~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 354 (763)
--...+|++||+|++++.+ ++.-|.... + .+.. =|.|.+| + . | -.-|..++|...+..+.+.|
T Consensus 10 ~~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~-----vy~~~~~---~--~-g---~~~k~~~~v~~~~~~v~~~l 74 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDK-----VMSKVVP---D--V-G---KVFRLEVVVDQPMERLYEEL 74 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCE-----EEEEECS---S--S-C---EEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcE-----EEEEEcC---C--C-c---eEEEEEEEEcCCHHHHHHHH
Confidence 3456899999999999976 345797652 2 2211 2333333 1 1 2 34488999999999999998
Q ss_pred c-C---hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhh-cCCCCccCceeEEEEeeeeeCCceEEEEEEec
Q 004294 355 M-D---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ-VPSPLVPTRESYYVRYCKQHGEGTWAVVDVSL 429 (763)
Q Consensus 355 m-D---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~ 429 (763)
+ | +.+|-..|- ..+||..-.. ++ .+.|.... .+.+++++|||.++||.++. +|.++|+-.|+
T Consensus 75 ~~d~~~r~~Wd~~~~-------~~~vle~~~~----~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv 141 (221)
T 3p0l_A 75 VERMEAMGEWNPNVK-------EIKVLQKIGK----DT-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT 141 (221)
T ss_dssp TTTGGGTTTSCTTCS-------EEEEEEECSS----SE-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEEC
T ss_pred HhccchhhhcCcchh-------eEEEEEecCC----Ce-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEec
Confidence 4 6 567877763 4444444322 22 45564332 23568999999999999985 68899999998
Q ss_pred CCCC-C--CCCceeeecCccceEEecCCC--ceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 430 DNLR-P--SPAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 430 d~~~-~--~~~~~~~~lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
+.-. | ..++|+..+++|++|+++++| .|+|||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 142 ~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 142 DFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7332 2 268999999999999999988 999999999988766 44 456777777788889999998887
No 76
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.21 E-value=2.9e-10 Score=115.46 Aligned_cols=194 Identities=13% Similarity=0.208 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeecCCC--CccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHH-H
Q 004294 276 KPMIIELAVAAMEELIRMAQMGEPLWMTSLDG--TAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLV-E 352 (763)
Q Consensus 276 ~~~~~~lA~~Am~El~~la~~~eplWi~~~~~--~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e 352 (763)
....++++++|+++++++... .--|-..... +.. -|.+..+. .|. .-|..++|...+..+. +
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~-----vy~~~~~~------~g~---~~k~~~~v~~~~~~v~~~ 84 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDT-----VYTIEVPF------HGK---TFILKTFLPCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCE-----EEEEEETT------TEE---EEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCE-----EEEEecCC------CCc---eEEEEEEecCCHHHHHHH
Confidence 367789999999999999863 3468664321 111 14443321 121 3488899999999998 7
Q ss_pred HhcCh---hhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcC--CCCccCceeEEEEeeeeeCCceEEEEEE
Q 004294 353 ILMDV---NQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVP--SPLVPTRESYYVRYCKQHGEGTWAVVDV 427 (763)
Q Consensus 353 ~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~--SpLvp~Re~~fLRyckq~~~g~w~VvDv 427 (763)
+|+|. .+|-..| ..+..++.|.. ++ .+ +-++..+ .++++.|||.++|+++.. ++.++||-.
T Consensus 85 ~~~d~~~r~~Wd~~~----~~~~vle~~~~-------~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~ 150 (229)
T 1em2_A 85 VILQPERMVLWNKTV----TACQILQRVED-------NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGI 150 (229)
T ss_dssp TTTCHHHHTTTCTTE----EEEEEEEEETT-------TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEE
T ss_pred HHhCccchhhccccc----ceEEEEEecCC-------Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEe
Confidence 77665 4565555 24455555432 12 23 3346655 678999999999999997 566999999
Q ss_pred ecCCCC-C--CCCceeeecCccceEEecC--CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004294 428 SLDNLR-P--SPAVRCRRRPSGCLIQEMP--NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (763)
Q Consensus 428 S~d~~~-~--~~~~~~~~lPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqcerl 502 (763)
|++.-. | ..++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-.+++.|+.+|+.+
T Consensus 151 Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 151 ATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp ECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997442 1 2689999999999999987 67899999999987765 55 67788888888888999998888754
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.18 E-value=3.6e-11 Score=123.85 Aligned_cols=189 Identities=16% Similarity=0.193 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhhcCCCCceeecCCC-CccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHH-HHhcChhh
Q 004294 282 LAVAAMEELIRMAQMGEPLWMTSLDG-TAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLV-EILMDVNQ 359 (763)
Q Consensus 282 lA~~Am~El~~la~~~eplWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~ 359 (763)
+++.++.|+++.+.....-|-..... +..+ |.+..+ .|...-.-|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~~-------~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKVG-------DGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECCC-------SSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEcC-------CCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 44677788887765445569765432 1111 222111 1222335577888877777764 78999999
Q ss_pred HHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeee-eCCceEEEEEEecCCC--CCCC
Q 004294 360 WSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQ-HGEGTWAVVDVSLDNL--RPSP 436 (763)
Q Consensus 360 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq-~~~g~w~VvDvS~d~~--~~~~ 436 (763)
|-..|- .++.++.|+. .-.++|..+..+.| +++|||.++||.++ +++|.++||-.|++.- .+..
T Consensus 101 Wd~~~~----~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g 167 (237)
T 2pso_A 101 WDEDFV----QWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLG 167 (237)
T ss_dssp TCTTBC----CCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCS
T ss_pred HHhhhc----eEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCCC
Confidence 998873 4456666542 22567777776665 79999999999985 7899999999999753 2226
Q ss_pred CceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 437 AVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 437 ~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
++|+..+++|++|+++++|.|+|||+-|++.. ..+|.-+..++ .-.+-..++.|+.+++
T Consensus 168 ~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~----~~~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 168 GVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGF----GHLCAAEVARIRNSFQ 226 (237)
T ss_dssp SEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHH----HHHHHHHHHHHHHTTS
T ss_pred cEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999987 45776653333 2222245666655443
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.14 E-value=1.7e-11 Score=108.52 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=53.7
Q ss_pred CCcCChHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHHH
Q 004294 94 YHRHTQHQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERH 152 (763)
Q Consensus 94 RtrfT~eQl~~LE~~F~~---~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r~ 152 (763)
-+-|+.+++..|+..|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 356899999999999987 99999999999999999999999999999999999865443
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.08 E-value=2.5e-11 Score=123.52 Aligned_cols=60 Identities=17% Similarity=0.337 Sum_probs=53.7
Q ss_pred CCCCCCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCCcceeecccchhhhh
Q 004294 87 RPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELG---------------------LEPLQVKFWFQNKRTQM 145 (763)
Q Consensus 87 ~~kkkR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~Lg---------------------L~~rQVkvWFQNRRaK~ 145 (763)
++++||.|+.|++.|+..||..|..++||+..+|++||+.++ |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 445688899999999999999999999999999999999988 89999999999999875
Q ss_pred H
Q 004294 146 K 146 (763)
Q Consensus 146 K 146 (763)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=6.1e-11 Score=100.00 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhh
Q 004294 99 QHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ 144 (763)
Q Consensus 99 ~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK 144 (763)
.+|+..||..|..+++|+.+++..||..+||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.98 E-value=4.8e-09 Score=104.75 Aligned_cols=147 Identities=20% Similarity=0.270 Sum_probs=116.9
Q ss_pred eeecceEEE-echhhHHHHhcC---hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEE
Q 004294 336 ASRETAVVI-MNHISLVEILMD---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYV 411 (763)
Q Consensus 336 AsR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fL 411 (763)
.-|..++|. ..+..+.+.|+| +.+|...| ...+||.. +|. .++|.++..|.|+ ..|||.++
T Consensus 53 ~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-------~~~~vle~------~~~-~i~~~~~~~p~p~-~~RD~v~~ 117 (214)
T 1ln1_A 53 EYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-------KELYEQEC------NGE-TVVYWEVKYPFPM-SNRDYVYL 117 (214)
T ss_dssp EEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-------EEEEEEEE------TTE-EEEEEEECCCTTS-CCEEEEEE
T ss_pred EEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-------hhEEEecc------CCC-EEEEEEEEcCCCC-CCceEEEE
Confidence 568999995 999999999999 67787776 35566654 232 4789999998886 99999999
Q ss_pred EeeeeeC-Cc--eEEEEEEecCCCC-C--CCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhh
Q 004294 412 RYCKQHG-EG--TWAVVDVSLDNLR-P--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNA 485 (763)
Q Consensus 412 Ryckq~~-~g--~w~VvDvS~d~~~-~--~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~a 485 (763)
|+++.++ +| .|+|+-.|++.-. | ..++|+..+++|++|++.++|.|+||++-|++.. ..+|.- |++..+.
T Consensus 118 ~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~~ 193 (214)
T 1ln1_A 118 RQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAAK 193 (214)
T ss_dssp EEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHHH
T ss_pred EEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHHH
Confidence 9999875 66 5999999987432 1 2689999999999999999999999999999987 456644 3444555
Q ss_pred HHHHHHHHHHHHHHHH
Q 004294 486 FGAKRWVATLDRQCER 501 (763)
Q Consensus 486 fgA~rWlatLqRqcer 501 (763)
-++..++..|+++|+.
T Consensus 194 ~~~~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 194 NGVPNFLKDMARACQN 209 (214)
T ss_dssp THHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHh
Confidence 6677888899888864
No 82
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.97 E-value=6.2e-11 Score=128.84 Aligned_cols=56 Identities=27% Similarity=0.500 Sum_probs=53.2
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhH
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~K 146 (763)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45677899999999999999999999999999999999999999999999999986
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.97 E-value=5.7e-09 Score=105.92 Aligned_cols=192 Identities=15% Similarity=0.135 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeecCCCCccccChHHHhhcCCCCCCCCCCCCcceeeecceEEEechhhHHHHhcC
Q 004294 277 PMIIELAVAAMEELIRMAQMGEPLWMTSLDGTAAVLNEDEYVRTFPRGIGPKPTGFKCEASRETAVVIMNHISLVEILMD 356 (763)
Q Consensus 277 ~~~~~lA~~Am~El~~la~~~eplWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD 356 (763)
.-+.+.+.++|..+..+. +.-|-...+.. +-.=|.+..+ +...-.-|..++|...+..|.+.|+|
T Consensus 24 ~~~~~~~~e~l~~~~~~~---~~~W~~~~~~~----gv~vy~~~~~--------~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 24 ASISTKLQNTLIQYHSIE---EDEWRVAKKAK----DVTVWRKPSE--------EFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp CTHHHHHHHHHHHHTTSC---GGGCEEEEEET----TEEEEEEECS--------SSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhhC---CCCCEEEEECC----CEEEEEEecc--------CCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 346666666666665543 55696543210 0111222111 11223458889999999999999999
Q ss_pred hh---hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhc-CCCCccCceeEEEEeeeeeCCceEEEEEEecCCC
Q 004294 357 VN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQV-PSPLVPTRESYYVRYCKQHGEGTWAVVDVSLDNL 432 (763)
Q Consensus 357 ~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SpLvp~Re~~fLRyckq~~~g~w~VvDvS~d~~ 432 (763)
.. +|-..|- ..+||..-. +.-.+.|.-+.. +-|++..|||.++|+.+..++| ++|+-+|++.-
T Consensus 89 ~~~r~~Wd~~~~-------~~~vle~id-----~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp 155 (224)
T 1jss_A 89 GPWRLDWDRLMT-------SLDVLEHFE-----ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS 155 (224)
T ss_dssp STTHHHHCSSEE-------EEEEEEECS-----TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC
T ss_pred ccccccccccee-------eEEEEEEcC-----CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC
Confidence 65 8877663 344444322 112556655554 3457999999999999999877 78899999743
Q ss_pred C-CCCCceeeecCccceEEecCCC--ceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHHHH
Q 004294 433 R-PSPAVRCRRRPSGCLIQEMPNG--YSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCE 500 (763)
Q Consensus 433 ~-~~~~~~~~~lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRqce 500 (763)
. +..++|+..+++|++|+++++| .|+|||+-|++.--+ +| +.+++..+.-+...++..|+.+|+
T Consensus 156 ~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 156 ETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3 3378999999999999999875 899999999988754 44 466777778888899999988765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.72 E-value=7.3e-08 Score=100.75 Aligned_cols=126 Identities=11% Similarity=0.172 Sum_probs=94.8
Q ss_pred ecceEEEechhhHHHHhcChh---hHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCC--CccCceeEEEE
Q 004294 338 RETAVVIMNHISLVEILMDVN---QWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRESYYVR 412 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~Sp--Lvp~Re~~fLR 412 (763)
|..++|...+..|.+.|+|.+ +|-..| ..++.++-|+ . + .++| ++..|+| ++++|||..||
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~----~~~~vle~id---~---~---~ivY-~~~~p~~~~~v~~RDFV~lr 156 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY----RSVELVQQVD---E---D---DAIY-HVTSPALGGHTKPQDFVILA 156 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC----CEEEEEEEEE---T---T---EEEE-EEEECCCTTCSSCEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc----cEEEEEEEcC---C---C---eEEE-EEecCCccCCCCCCEEEEEE
Confidence 888899999999999998875 455554 2334444433 1 1 4577 6777875 79999999999
Q ss_pred eeeee-CCce-EEEEEEecCCC--CCC-CCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhh
Q 004294 413 YCKQH-GEGT-WAVVDVSLDNL--RPS-PAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQL 479 (763)
Q Consensus 413 yckq~-~~g~-w~VvDvS~d~~--~~~-~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl 479 (763)
|.+.. .+|. ++|+-+|++.- .+. .|+|+..+|+||+|+++++|.|+||++-|++- ..++..--.+
T Consensus 157 ~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~~~n~ 226 (258)
T 3fo5_A 157 SRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYVTTNV 226 (258)
T ss_dssp EEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHHHHHH
T ss_pred EEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCceEEec
Confidence 99874 4775 99999998632 222 68999999999999999999999999988873 4455444333
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.60 E-value=5.1e-07 Score=88.51 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=109.7
Q ss_pred eeecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeee
Q 004294 336 ASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCK 415 (763)
Q Consensus 336 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyck 415 (763)
.=|..++|...+.++.+.|+|.+...+--|.+ ...+||.. .. + -.++|.++..|-| +..|||.++|+..
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~----~~~~vle~-~~----~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPDV----AASELLKA-TD----T-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE----EEEEEEEE-CS----S-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc----CEEEEEee-cC----C-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 46888999999999999999976655544432 45567776 22 2 3566877777765 7999999999999
Q ss_pred eeCCceEEEEEEecCCCCC--CCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHH
Q 004294 416 QHGEGTWAVVDVSLDNLRP--SPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVA 493 (763)
Q Consensus 416 q~~~g~w~VvDvS~d~~~~--~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWla 493 (763)
...+|...|+=.+.....| ..++|++.+++|++|++ .+|.|+||++-|++..- .+|. -|++..+.-+.-..+.
T Consensus 97 ~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~l~ 171 (189)
T 3qsz_A 97 KAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGTLK 171 (189)
T ss_dssp ECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHHHH
T ss_pred ECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHHHH
Confidence 9888876554333222212 26799999999999999 99999999999998763 3443 3455555666777889
Q ss_pred HHHHHHHHH
Q 004294 494 TLDRQCERL 502 (763)
Q Consensus 494 tLqRqcerl 502 (763)
.|+++|+.-
T Consensus 172 ~L~k~~~~~ 180 (189)
T 3qsz_A 172 ALRSHLRQA 180 (189)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhhc
Confidence 998877643
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.45 E-value=1.5e-08 Score=75.55 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=18.9
Q ss_pred cceeecccchhhhhHHHhHHHH
Q 004294 132 LQVKFWFQNKRTQMKTQHERHE 153 (763)
Q Consensus 132 rQVkvWFQNRRaK~Kr~~~r~e 153 (763)
+||+|||||||+||||++.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999999766543
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.35 E-value=3.6e-06 Score=86.75 Aligned_cols=149 Identities=16% Similarity=0.242 Sum_probs=106.5
Q ss_pred eecceEEE-echhhHHHHhcC---hhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEE
Q 004294 337 SRETAVVI-MNHISLVEILMD---VNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVR 412 (763)
Q Consensus 337 sR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLR 412 (763)
=|..++|. ..+..+.+.|+| +.+|-..+ ..++.++.|.. ++ .+.|..+..|.|+ ..|||.++|
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~----~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r 141 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETTI----ENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLS 141 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCSE----EEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEE
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhhc----ceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEE
Confidence 46566665 789999999999 55666664 34455555432 12 6788888888886 889999999
Q ss_pred eeeeeC----C--ceEEEEEEecCCCC-C-C-CCceeee---cCccceEEecCC--------CceEEEEEEeeeecCccc
Q 004294 413 YCKQHG----E--GTWAVVDVSLDNLR-P-S-PAVRCRR---RPSGCLIQEMPN--------GYSKVTWVEHVEVDDRGV 472 (763)
Q Consensus 413 yckq~~----~--g~w~VvDvS~d~~~-~-~-~~~~~~~---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~v 472 (763)
++++.. + +.|+|+..|++.-. | . .++|+.. +.+|++|++..+ +.|+|||+-|++.-- .+
T Consensus 142 ~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~i 220 (255)
T 2e3n_A 142 VIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WA 220 (255)
T ss_dssp EEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CC
T ss_pred EEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-cc
Confidence 999883 3 59999999997542 1 1 6799984 679999998733 579999999998764 45
Q ss_pred chhhHhhhhchhhHHHHHHHHHHHHHHHHH
Q 004294 473 HNLYKQLVSTGNAFGAKRWVATLDRQCERL 502 (763)
Q Consensus 473 ~~l~rpl~~Sg~afgA~rWlatLqRqcerl 502 (763)
|.- +++.....+.-..+..|+.+++..
T Consensus 221 P~~---lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 221 PAS---VLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHhccccHHHHHHHHHHHHh
Confidence 543 345555667777888888877743
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.74 E-value=0.024 Score=56.97 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=117.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhh--
Q 004294 522 DGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFL-- 599 (763)
Q Consensus 522 ~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-- 599 (763)
..+..++++|+..+..|-.-+.. ..+|.... ..++|+|..+...+.+ |.++ ++..-+++||+.||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~~~----~~~~--k~~~~v~~~~~~v~~~l~~ 88 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVEFP----GNLY--RGEGIVYGTLEEVWDCVKP 88 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSSSS----SEEE--EEEEEESSCHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCCCC----CcEE--EEEEEECCCHHHHHHHHHh
Confidence 34457999999999988886643 47898775 3568999988763322 3444 44445599999999999
Q ss_pred cccCccchhhhccCCCceeEEeecccCCCCCceeEEEEeeeccC-CCC-CCCceEEEEecccCCCCcEE-EEeecchhhh
Q 004294 600 RDENTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQS-ANS-SQSNMLILQESCTDPTASFV-IYAPVDIVAM 676 (763)
Q Consensus 600 rd~~~R~eWdils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~~-~~~-~~~~~liLQes~~D~sgs~v-VyAPvD~~~m 676 (763)
.|...|.+||-... ..+.+..|. .... |.+...... ... ...+..+|.-...+.-|+++ +.-.||-+.+
T Consensus 89 ~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~ 160 (231)
T 2r55_A 89 AVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLC 160 (231)
T ss_dssp --CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTTS
T ss_pred hCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCCC
Confidence 89999999995332 233444442 1222 344221000 011 23356666655565568775 5777886531
Q ss_pred hhhhcCCCCCC--ccccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHH
Q 004294 677 NVVLNGGDPDY--VALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVER 753 (763)
Q Consensus 677 ~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~ 753 (763)
- ..+.+ +.++|+||.|-|.... .++|.+|.-+|+=... .|.. .+..+ +-.-+-.++++
T Consensus 161 P-----~~~~~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP~~--lvn~~--~~~~~~~~~~~ 221 (231)
T 2r55_A 161 P-----PKPGFVRGFNHPCGCFCEPLPGE----------PTKTNLVTFFHTDLSGYLPQN--VVDSF--FPRSMTRFYAN 221 (231)
T ss_dssp C-----CCTTCEEEEECSEEEEEEECC------------CCCEEEEEEECEECCSSCCHH--HHHHH--HHHHHHHHHHH
T ss_pred C-----CCCCCEEEEEEeeEEEEEEeCCC----------CCcEEEEEEEEeCCCCCccHH--HHHHH--HhHhHHHHHHH
Confidence 1 11233 3578999999994211 2578999877765443 3311 11111 22234477777
Q ss_pred HHHhhc
Q 004294 754 IKASLS 759 (763)
Q Consensus 754 Ik~al~ 759 (763)
++.++.
T Consensus 222 Lr~~~~ 227 (231)
T 2r55_A 222 LQKAVK 227 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 89
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=95.78 E-value=0.042 Score=55.25 Aligned_cols=174 Identities=20% Similarity=0.269 Sum_probs=99.0
Q ss_pred CCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecccC
Q 004294 547 AHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANG 626 (763)
Q Consensus 547 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g 626 (763)
..+|..... .++|+|.++...+. .|-+. ++..-+++||+.||++|.|...|.+||-... ..+.+-+|
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~--~~~vle~i--- 108 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWRLDWDRLMT--SLDVLEHF--- 108 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTHHHHCSSEE--EEEEEEEC---
T ss_pred CCCCEEEEE--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCccccccccccee--eEEEEEEc---
Confidence 568986643 37899999865332 23344 4445559999999999999999999995331 13334444
Q ss_pred CCCCceeEEEEeeeccCCC---CCCCceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCCc--cccCCccEEccCC
Q 004294 627 RDTGNCVSLLRVNCLQSAN---SSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDG 701 (763)
Q Consensus 627 ~~~gn~vSll~~~~~~~~~---~~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg 701 (763)
+..+.|.-.... ... -...+..++.....+..|.+++.-.||-+.+ .+.+| .++++||.|-|.+
T Consensus 109 -d~~~~I~y~~~~---~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~VR~~~~~~g~~i~p~~ 177 (224)
T 1jss_A 109 -EENCCVMRYTTA---GQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEFVRGYNHPCGWFCVPLK 177 (224)
T ss_dssp -STTEEEEEEEEC---CBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTSEECEECSEEEEEEEET
T ss_pred -CCCeEEEEEEcc---cccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCCEEEEecccEEEEEEcC
Confidence 223333222211 111 1233555555444445566667777876543 13443 5889999999832
Q ss_pred CCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhh-hhhhhhHHHHHHHHhhc
Q 004294 702 TSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVAT-VNNLIACTVERIKASLS 759 (763)
Q Consensus 702 ~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~t-v~~li~~tv~~Ik~al~ 759 (763)
.. ..+|.+|.-+|+=... .|.. -|.+ +-..+-.+++.++.++.
T Consensus 178 ~~----------~~~t~vt~~~~~Dp~G~iP~~-----lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 178 DS----------PSQSLLTGYIQTDLRGMIPQS-----AVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp TE----------EEEEEEEEEECEECCSCCCHH-----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC----------CCceEEEEEEEeCCCCCccHH-----HHHHHHHHhHHHHHHHHHHHHh
Confidence 11 1358888666554433 3321 1111 12334466777776653
No 90
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=95.68 E-value=0.11 Score=50.26 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecccCC
Q 004294 548 HTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGR 627 (763)
Q Consensus 548 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~ 627 (763)
++|..... .++|+|.+++..+ . .+..-++...++.||+.||++|.|...|.+||-.+ .+.--|.+
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~-~-----~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~-----~~~~vle~-- 67 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG-S-----PLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDV-----AASELLKA-- 67 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT-C-----SSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE-----EEEEEEEE--
T ss_pred CCCEEEEc--CCCEEEEEEeCCC-C-----CeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc-----CEEEEEee--
Confidence 57987643 5689999998632 1 12345666777999999999999999999999532 33333333
Q ss_pred CCCceeEEEEeeeccCCCCCCC-ceEEEEecccCCCCcEEEEeecchhhhhhhhcCCCCCC--ccccCCccEEccCCCCC
Q 004294 628 DTGNCVSLLRVNCLQSANSSQS-NMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDY--VALLPSGFAILPDGTSL 704 (763)
Q Consensus 628 ~~gn~vSll~~~~~~~~~~~~~-~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~ 704 (763)
+.+..|.-.... ..-+-.+ +..++.....|..|.+++..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 ~~~~~i~y~~~~---~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~-- 136 (189)
T 3qsz_A 68 TDTEQYHYLDNS---APWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA-- 136 (189)
T ss_dssp CSSEEEEEEEEC---CSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS--
T ss_pred cCCceEEEEEee---cCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC--
Confidence 333443333332 1112233 344444444555576554433321100 011233 457889999988 32
Q ss_pred CCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004294 705 HGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 759 (763)
Q Consensus 705 ~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 759 (763)
++|.+|.-+|+=... .|.. + +..+ +...+-.+++++|.++.
T Consensus 137 ----------~~t~vt~~~~~dp~G~iP~~-l-vn~~--~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 ----------DGVDVTYQMHASPGGSIPSW-L-ANQT--VVETPFGTLKALRSHLR 178 (189)
T ss_dssp ----------SSEEEEEEEEECSCSSSCHH-H-HHHT--TTHHHHHHHHHHHHHHT
T ss_pred ----------CeEEEEEEEEeCCCCCCCHH-H-HHHH--HHHHHHHHHHHHHHHhh
Confidence 368888877776543 2221 1 1111 12233467777777764
No 91
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.54 E-value=0.13 Score=45.94 Aligned_cols=140 Identities=10% Similarity=-0.009 Sum_probs=82.1
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+.. |..--+. +.. + +.+.-+..++....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~~----g~~~~~~--~~~--~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREGA----RTRSRWV--AVA--M--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEETT----EEEEEEE--EEE--T--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCCC----ccEEEEE--EEe--C--CceEEEEEEEEEcCC
Confidence 34566778999999999999999999865 33556654322 3211111 111 1 223334455544322
Q ss_pred CceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHHH
Q 004294 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQ 498 (763)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqRq 498 (763)
+...+. . .+++ ++.. +=.-+-+++.++| |+|+|..+.+....-+..++.+++..-+.=+.++.++.|.+.
T Consensus 72 ~~~i~~-~-~~~g----~~~~---~~~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 141 (147)
T 2d4r_A 72 NLRNRF-F-SPEG----DFDR---YEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEER 141 (147)
T ss_dssp TTEEEE-E-EEEE----SCSE---EEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccC----Chhh---eEEEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1 1121 1100 0011345677888 999999888876444556667776666667789999999888
Q ss_pred HHHH
Q 004294 499 CERL 502 (763)
Q Consensus 499 cerl 502 (763)
+|..
T Consensus 142 ~e~~ 145 (147)
T 2d4r_A 142 VLAA 145 (147)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8864
No 92
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.41 E-value=0.22 Score=50.81 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=99.7
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhH-hhhhcccCccchhhhccCCCceeEEeecc
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRV-FDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~v-f~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (763)
...+|..... .++|+|.+++.. +|.+ +-.-++..-++.+|..+ +++|.| |.+||-..- .++.+-.|.
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~id 115 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETLD 115 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEEE
T ss_pred CCCCCEEEec--CCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEcC
Confidence 3557987743 578999999852 2222 23346666778777666 567777 999995432 234444442
Q ss_pred cCCCCCceeEEEEeeeccCCCCCC-CceEEEEecccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCccEEccCC
Q 004294 625 NGRDTGNCVSLLRVNCLQSANSSQ-SNMLILQESCTD-PTASFVI-YAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDG 701 (763)
Q Consensus 625 ~g~~~gn~vSll~~~~~~~~~~~~-~~~liLQes~~D-~sgs~vV-yAPvD~~~m~~vm~G~d~~~v~lLPSGF~I~Pdg 701 (763)
..+.|.-.... ...+-. .+..++.-...| ..|++|| ...|+-+.+-. .|. =-+..+++||.|-|.+
T Consensus 116 ----~~~~I~y~~~~---~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~--~g~--VR~~~~~~g~~i~P~~ 184 (237)
T 2pso_A 116 ----RQTEIYQYVLN---SMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL--LGG--VRAVVMDSQYLIEPCG 184 (237)
T ss_dssp ----TTEEEEEEEEC---CSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC--CSS--EECCEEEEEEEEEECS
T ss_pred ----CCcEEEEEEec---CCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC--CCc--EEEEEeccEEEEEECC
Confidence 23333333222 222222 345555544455 3476665 44666543211 111 1356889999999953
Q ss_pred CCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhcc
Q 004294 702 TSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLSC 760 (763)
Q Consensus 702 ~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~~ 760 (763)
. ++|.+|.-+|+=... .|.. + -..+...+..++.+||.++..
T Consensus 185 ~------------~~t~vt~~~~~Dp~G~iP~~---l--n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 185 S------------GKSRLTHICRIDLKGHSPEW---Y--SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp T------------TCEEEEEEEEECCSSSCTTT---T--TTHHHHHHHHHHHHHHHTTSC
T ss_pred C------------CCEEEEEEEEeCCCCCchHH---H--HHHHHHHHHHHHHHHHHHHHh
Confidence 1 479999888776543 3321 2 122344555789999998864
No 93
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=95.37 E-value=0.4 Score=47.83 Aligned_cols=197 Identities=15% Similarity=0.217 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHhhhh-ccc
Q 004294 524 RKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFL-RDE 602 (763)
Q Consensus 524 r~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FL-rd~ 602 (763)
...-.++++.-...+..-+. ...+|.... ...++|.|.+++. +|. |.++ ++..-+++||+.||++| .|.
T Consensus 9 ~~~y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 9 ELAYLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 34555666666666655444 356898773 1246788999884 332 4444 44455699999999999 587
Q ss_pred CccchhhhccCCCceeEEeecccCCCCCceeEEEEeeecc-CCCC-CCCceEEEEecccCCCCcEEEE-eecchhhhhhh
Q 004294 603 NTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQ-SANS-SQSNMLILQESCTDPTASFVIY-APVDIVAMNVV 679 (763)
Q Consensus 603 ~~R~eWdils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~-~~~~-~~~~~liLQes~~D~sgs~vVy-APvD~~~m~~v 679 (763)
..|.+||-..- ..+.+-+|. .+.. |.+...-. .... ...+..+|.-...+. |++++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC--
Confidence 89999995331 234444442 2222 33322100 0112 223555555544443 555554 445543211
Q ss_pred hcCCCCCCc--cccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhhh-hhhhhHHHHHHH
Q 004294 680 LNGGDPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATV-NNLIACTVERIK 755 (763)
Q Consensus 680 m~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv-~~li~~tv~~Ik 755 (763)
..+.+| .++++||.|-|.+.. ..+|.+|.-+|+=... .|.. -|..+ ..-+-.+++.+|
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP~~-----lvn~~~~~~~~~~~~~Lr 209 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS----------PSKTKLTWLLSIDLKGWLPKS-----IINQVLSQTQVDFANHLR 209 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE----------EEEEEEEEEECEECCSSCCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC----------CCcEEEEEEEEecCCCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 123343 579999999994321 1368888888775443 2221 12222 233446888888
Q ss_pred Hhhc
Q 004294 756 ASLS 759 (763)
Q Consensus 756 ~al~ 759 (763)
.++.
T Consensus 210 ~~~~ 213 (221)
T 3p0l_A 210 KRLE 213 (221)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8876
No 94
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=95.14 E-value=0.18 Score=50.59 Aligned_cols=197 Identities=9% Similarity=0.109 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeeccCChhhHh-hhhcccC
Q 004294 525 KSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVF-DFLRDEN 603 (763)
Q Consensus 525 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf-~FLrd~~ 603 (763)
+.-++.++.....|-.-+. ...+|..... ..++++|.++...+ .|.+. ++..-+++||..|| ++|.|..
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~~ 90 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEKN-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQPE 90 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEEE-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEEe-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCcc
Confidence 4444445544444444333 2468987642 23578888876531 23444 44444599999999 9999999
Q ss_pred ccchhhhccCCCceeEEeecccCCCCCceeEEEEeeeccCCCC-CCCceEEEEecccCCCCcEEEEeecchhhhhhhhcC
Q 004294 604 TRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQSANS-SQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNG 682 (763)
Q Consensus 604 ~R~eWdils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~~~~~-~~~~~liLQes~~D~sgs~vVyAPvD~~~m~~vm~G 682 (763)
.|.+||-..- .++.+-+| +.++.| +..+.+-..... ...+.+++.-...+..+-++++..|+-+.+-
T Consensus 91 ~r~~Wd~~~~--~~~vle~~----~~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P----- 158 (229)
T 1em2_A 91 RMVLWNKTVT--ACQILQRV----EDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP----- 158 (229)
T ss_dssp HHTTTCTTEE--EEEEEEEE----TTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC-----
T ss_pred chhhcccccc--eEEEEEec----CCCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC-----
Confidence 9999995331 23444444 222333 222221000111 2235555555455544456666677765321
Q ss_pred CCCC--CccccCCccEEccCCCCCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchh-hh-hhhhhhHHHHHHHHh
Q 004294 683 GDPD--YVALLPSGFAILPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSV-AT-VNNLIACTVERIKAS 757 (763)
Q Consensus 683 ~d~~--~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv-~t-v~~li~~tv~~Ik~a 757 (763)
..+. -+.++++||.|-|.... .++|.+|.-+|+=... .| ..+ .. +...+-.++++++.+
T Consensus 159 ~~~~~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP------~~l~n~~~~~~~~~~~~~Lr~~ 222 (229)
T 1em2_A 159 PTHKYVRGENGPGGMIVLKSASN----------PRVCTFVWILNTDLKGRLP------RYLIHQSLAATMFEFAFHLRQR 222 (229)
T ss_dssp CCTTSEECEECSEEEEEEECSSC----------TTCEEEEEEECEECCSSSC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeeeecccEEEEEecCCC----------CCcEEEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 24578999999993211 2468888887765443 33 121 11 233455677777777
Q ss_pred hc
Q 004294 758 LS 759 (763)
Q Consensus 758 l~ 759 (763)
+.
T Consensus 223 ~~ 224 (229)
T 1em2_A 223 IS 224 (229)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 95
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=94.33 E-value=0.32 Score=47.83 Aligned_cols=174 Identities=15% Similarity=0.209 Sum_probs=98.5
Q ss_pred CCCCcccccCCCCCceEEEEccCCCCCCCCCceEEEEEEEeecc-CChhhHhhhhcccCccchhhhccCCCceeEEeecc
Q 004294 546 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLP-VPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIA 624 (763)
Q Consensus 546 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl~A~tS~wLp-v~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia 624 (763)
...+|..... .++|+|..+...+ ..+..-++..-++ +||+.||++|.|...|.+||-.. .+.--|-
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-----~~~~vle 92 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDKK------TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-----KELYEQE 92 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEETT------TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-----EEEEEEE
T ss_pred CCCCcEEEEE--CCCeEEEEeccCC------CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-----hhEEEec
Confidence 4568987754 4579999887532 1345667777787 99999999999999999999532 1111121
Q ss_pred cCCCCCceeEEEEeeeccCCCCCCC-ceEEEEecc-cCCCCc--E-EEEeecchhhhhhhhcCCCCCC--ccccCCccEE
Q 004294 625 NGRDTGNCVSLLRVNCLQSANSSQS-NMLILQESC-TDPTAS--F-VIYAPVDIVAMNVVLNGGDPDY--VALLPSGFAI 697 (763)
Q Consensus 625 ~g~~~gn~vSll~~~~~~~~~~~~~-~~liLQes~-~D~sgs--~-vVyAPvD~~~m~~vm~G~d~~~--v~lLPSGF~I 697 (763)
. .|+.|.-.... ..-+-.+ +..++.... .|..|. + ++.-.|+.+.+ ...+.+ +..+++||.|
T Consensus 93 ~---~~~~i~~~~~~---~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i 161 (214)
T 1ln1_A 93 C---NGETVVYWEVK---YPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAI 161 (214)
T ss_dssp E---TTEEEEEEEEC---CCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEE
T ss_pred c---CCCEEEEEEEE---cCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEE
Confidence 1 12333333322 1112233 344444322 344453 3 44556765431 112444 5578999999
Q ss_pred ccCCCCCCCCCCCCCCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhHHHHHHHHhhc
Q 004294 698 LPDGTSLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIACTVERIKASLS 759 (763)
Q Consensus 698 ~Pdg~~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~al~ 759 (763)
-|.+ .++|.+|.-.|+=... .|.. + +..+ +...+-.++++++.++.
T Consensus 162 ~p~~------------~~~t~v~~~~~~Dp~G~iP~~-l-~n~~--~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 162 ESDG------------KKGSKVFMYYFDNPGGQIPSW-L-INWA--AKNGVPNFLKDMARACQ 208 (214)
T ss_dssp EECS------------SSSEEEEEEEEECCSSCCCHH-H-HHHH--HHTHHHHHHHHHHHHHH
T ss_pred ecCC------------CCceEEEEEEEECCCCcccHH-H-HHHH--HHHHhHHHHHHHHHHHH
Confidence 9843 1468888887776543 2311 1 1111 23344566777777653
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.12 E-value=0.69 Score=48.05 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-CCCccc-ccCchhhHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEE
Q 004294 487 GAKRWVATLDRQCERLASVMATNIP-TGEVGV-ITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVM 564 (763)
Q Consensus 487 gA~rWlatLqRqcerla~~~~~~ip-~~d~~~-i~~~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~ 564 (763)
|-||.-.++.|-=-||.-- .|- ..+..+ ...++-+.+=+.|+.-.+.+...- ....+|..... .++|+|.
T Consensus 9 ~~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~~~--~~gv~Vy 80 (258)
T 3fo5_A 9 GERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLSSE--ISQVRLY 80 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEEEE--ETTEEEE
T ss_pred chhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEEec--CCCeEEE
Confidence 3456666666654455332 221 122111 222466667777777666655542 24689987643 4789999
Q ss_pred EccCCCCCCCCCceEEEEEEEeeccCChhhHhhhhcccCccchhhhccCCCceeEEeecccCCCCCceeEEEEeeeccCC
Q 004294 565 TRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENTRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQSA 644 (763)
Q Consensus 565 ~r~~~~~~g~p~G~vl~A~tS~wLpv~p~~vf~FLrd~~~R~eWdils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~~~ 644 (763)
++.. + | .++-++..-+++||+.||++|.|...|.+||-.. ...+.+-+|. ..+. +.++.. ...
T Consensus 81 ~~~~---~----~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~--~~~~vle~id----~~~i--vY~~~~-p~~ 143 (258)
T 3fo5_A 81 TLED---D----K-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHY--RSVELVQQVD----EDDA--IYHVTS-PAL 143 (258)
T ss_dssp EEEC---S----S-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTC--CEEEEEEEEE----TTEE--EEEEEE-CCC
T ss_pred EEEC---C----C-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhc--cEEEEEEEcC----CCeE--EEEEec-CCc
Confidence 8642 2 2 3556777778999999999999999999999533 1244444542 2233 334431 111
Q ss_pred -CCCCC-ceEEEEecccC-CCCc-EEEE-eecchhhhhhhhcCCCCCCc--cccCCccEEccCCCCCCCCCCCCCCCCCc
Q 004294 645 -NSSQS-NMLILQESCTD-PTAS-FVIY-APVDIVAMNVVLNGGDPDYV--ALLPSGFAILPDGTSLHGANIGEAASGGS 717 (763)
Q Consensus 645 -~~~~~-~~liLQes~~D-~sgs-~vVy-APvD~~~m~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gs 717 (763)
..-.+ +..+|.-...+ ..|. +||- -.|+-+.+- .-+.+| ..+|+||.|-|.|. ++|
T Consensus 144 ~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~~------------~~t 206 (258)
T 3fo5_A 144 GGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREGD------------QLT 206 (258)
T ss_dssp TTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEET------------TEE
T ss_pred cCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECCC------------CCE
Confidence 12223 34444433333 3553 5543 345543211 123344 68999999999432 356
Q ss_pred eeEEeeehh
Q 004294 718 LLTVAFQIL 726 (763)
Q Consensus 718 llTvaFQil 726 (763)
.||-=.|+-
T Consensus 207 ~VtY~~q~d 215 (258)
T 3fo5_A 207 KVSYYNQAT 215 (258)
T ss_dssp EEEEEESCC
T ss_pred EEEEEEeeC
Confidence 666555544
No 97
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=90.91 E-value=4.1 Score=38.73 Aligned_cols=147 Identities=13% Similarity=0.082 Sum_probs=84.1
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~ 417 (763)
..+.+|...+..+-+.+-|.++|-+.+|.+ ..++|+..+.. + +.+++.+.-. ..++-|.-|+...-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~----~~~~v~~~~~~----~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPT----EKVEILEEGQG----Y----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSE----EEEEEEEEETT----E----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCccc----ceEEEEecCCC----E----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 455677788999999999999999999976 45666664321 1 2233332211 22343444444333
Q ss_pred CCceEEEEEEecCCCCCCCCceeeecCccc-eEEecCCCceEEEEEEeeeecCcccchhhHhhh---------hchhhHH
Q 004294 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGC-LIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLV---------STGNAFG 487 (763)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~~lPSGc-lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~---------~Sg~afg 487 (763)
++.. +.. ..++. +++|. .+ .|. -+.+.++|.|+|+|.-++++....+..++.++. ..-+.=+
T Consensus 74 ~~~~-i~~-~~~~~--~gpf~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~ 145 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--APIVG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERN 145 (172)
T ss_dssp TTTE-EEE-EEEEC--CTTEE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCChh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcc
Confidence 2222 111 12211 11221 01 122 256667788999999999998777666665543 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004294 488 AKRWVATLDRQCERLASVM 506 (763)
Q Consensus 488 A~rWlatLqRqcerla~~~ 506 (763)
.+.-|+.|.+.+|+.+...
T Consensus 146 ~~~~L~~lk~~aE~~~~~~ 164 (172)
T 3tfz_A 146 SVADLNAVLGEAERRVRAA 164 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 4567888888888776543
No 98
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=90.43 E-value=6.2 Score=38.00 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=80.3
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~ 417 (763)
..+.+|.-.+..+-+.+-|.++|-+.+|.+ ...++++.+. +. ..+...+++..--. .++|..-|.+ .
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~----~~~~~~~~~~-----~~-~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEY----AEAEILRQDG-----DG-FDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTE----EEEEEEEEET-----TE-EEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhhe----eEEEEEecCC-----CE-EEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 345667778899999999999999999976 4456666431 11 11111222222211 2233332322 1
Q ss_pred CCceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcc-cc-hhhHhhhhchhhHHHHHHHHHH
Q 004294 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRG-VH-NLYKQLVSTGNAFGAKRWVATL 495 (763)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~-v~-~l~rpl~~Sg~afgA~rWlatL 495 (763)
.++..+.... +.. ++| +.+=...-+.+.++| |+|+|.-+.++++.. +. ...+..+.. ..+..|+.|
T Consensus 73 ~~~~~I~~~~-l~~---gPf---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~----~~~~~L~~L 140 (169)
T 3tvq_A 73 KGSRTVRAHR-VET---GPF---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNT----TTRANMERI 140 (169)
T ss_dssp GGGTEEEEEE-SSC---TTE---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHH----HHHHHHHHH
T ss_pred CCCcEEEEEE-cCC---CCh---hheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHh----hHHHHHHHH
Confidence 2232222211 111 122 223334567888888 999999999997542 21 122333322 235568999
Q ss_pred HHHHHHHHHHH
Q 004294 496 DRQCERLASVM 506 (763)
Q Consensus 496 qRqcerla~~~ 506 (763)
++.+|+.+...
T Consensus 141 K~~aE~~~~~~ 151 (169)
T 3tvq_A 141 KKIIEDRHREG 151 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhhc
Confidence 99999887653
No 99
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=89.68 E-value=1.6 Score=40.05 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=84.0
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~ 417 (763)
+.+..|...+..+-+.+.|.++|-+.+|.+. .++|++.+..|. |. -+.+++.+- .-+.++-|..|++.+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~----~~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWIT----GMRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCC----CCCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcC----eeEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcC
Confidence 3456777889999999999999999999773 346666443221 11 134455442 2355666777887643
Q ss_pred CCceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004294 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (763)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqR 497 (763)
.+ ..|.-..+++.. ..+...++ +++.++| |+|++.-++|... .++..+...-+.-.+++-+.++.+
T Consensus 75 ~~--~~i~~~~~~G~f-~~~~g~w~------f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~f~~ 140 (148)
T 1t17_A 75 DA--RSIDVSLLYGPF-KRLNNGWR------FMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIACFEA 140 (148)
T ss_dssp TT--CEEEEEESSTTS-SCEEEEEE------EEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCCCh-hccEEEEE------EEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 223333444311 11122333 4567788 9999998888752 234444433334456777777766
Q ss_pred HHHHH
Q 004294 498 QCERL 502 (763)
Q Consensus 498 qcerl 502 (763)
.|+.+
T Consensus 141 r~~~~ 145 (148)
T 1t17_A 141 RAQQL 145 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 100
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.95 E-value=0.24 Score=41.71 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 004294 101 QIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (763)
Q Consensus 101 Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQ 139 (763)
-.+.|+..|+..+.+.......|+.+..|+..|||-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999994
No 101
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.26 E-value=0.11 Score=45.34 Aligned_cols=43 Identities=12% Similarity=0.379 Sum_probs=30.5
Q ss_pred CcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccc
Q 004294 95 HRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (763)
Q Consensus 95 trfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQN 140 (763)
..||.++....-..+.... .....++|+++|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4688888766655553220 123668999999999999999753
No 102
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=85.05 E-value=16 Score=34.20 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=78.4
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQH 417 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~ 417 (763)
..+.+|.-.+..+-+.+.|.++|...||..+.- ...+ +|....+.+++.+-. ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 345677889999999999999999999965432 1211 233344445665432 234888999997654
Q ss_pred CCceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHH
Q 004294 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATL 495 (763)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatL 495 (763)
++. .+... .+++ ++. +.+-.-.-+++.++|.|+|+|.-+.|.. ..+..++..++..-+--.+++-+.+.
T Consensus 77 ~~~-~I~~~-~~~g----~~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af 145 (161)
T 3p9v_A 77 EAG-KITWS-PIKG----EGN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTY 145 (161)
T ss_dssp TTT-EEEEE-ECTT----STT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEE-EecC----ccc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 22221 2222 221 1111223457778888999999988886 12333443333222233445555555
No 103
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=84.72 E-value=27 Score=33.02 Aligned_cols=143 Identities=11% Similarity=0.132 Sum_probs=80.0
Q ss_pred ecceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhh--cCCCCccCceeEEEEeee
Q 004294 338 RETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRESYYVRYCK 415 (763)
Q Consensus 338 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SpLvp~Re~~fLRyck 415 (763)
..+.+|.-.+..+-+++-|.++|-+.||.+ ...+|++.+ |+ .+.+.|. +--- -.++-++.|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~----~~~~vl~~~--~~------~~~~rl~~~~~~~--G~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEY----ASVEVLGRD--DD------KVTFRLTMHPDAD--GKVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSE----EEEEEEEEC--SS------EEEEEEEECCCTT--SCCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCc----eEEEEEecC--CC------EEEEEEEEEeccC--ceEEEEEEEEEE
Confidence 456677788999999999999999999866 456777754 11 1233322 2111 134555566654
Q ss_pred eeCCceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHH
Q 004294 416 QHGEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATL 495 (763)
Q Consensus 416 q~~~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatL 495 (763)
. .++..+ +..+ +.+++| +.+=...-+.+.++| |+|+|.-+.++++..-..+ +.+..-+-=..+.-|+.|
T Consensus 72 d-~~~~~I--~~~~--~~~gPf---~~l~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~L~~l 140 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGPF---QYMNIVWEYAETAEG-TVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQMALI 140 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTTE---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCCh---hhccCEEEEEECCCC-EEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHHHHHH
Confidence 3 333232 2221 112232 333344556777774 9999999999976521111 001111111223357777
Q ss_pred HHHHHHHHHH
Q 004294 496 DRQCERLASV 505 (763)
Q Consensus 496 qRqcerla~~ 505 (763)
++.+|+.+..
T Consensus 141 K~~~E~~~~~ 150 (159)
T 3tl1_A 141 RDRIEQAAGE 150 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhhh
Confidence 7777776643
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.09 E-value=3.3 Score=33.97 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
+.....+..+.+.|..+|..|...+ .+|+.|+..||+-+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 5667778888899999998877744 668888888877653
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.49 E-value=1.9 Score=37.37 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHh----HHHHHHhh
Q 004294 196 EHHLRLENARLREEID----RISAIAAK 219 (763)
Q Consensus 196 ~~~L~~En~~Lk~el~----r~~~~~~~ 219 (763)
...|..||.+|++|.. |+.++.+|
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999986 55555444
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.99 E-value=4.4 Score=32.83 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=28.5
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEI 210 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el 210 (763)
......+..+.+.|..+|..|...+ ..|+.|+..|+..|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i---------------------~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEV---------------------TLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 4556778888888888888877643 56777777777654
No 107
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.32 E-value=4.4 Score=35.53 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred hhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHH
Q 004294 142 RTQMKTQHERHENTQLRTENEKLRADNMRYRE 173 (763)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~ 173 (763)
|++.|++ .....+..+.+.|..||..|+.
T Consensus 29 rSR~krk---~r~~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 29 KSRDKAK---MRNLETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555543 3334455666677777766444
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=76.80 E-value=5.4 Score=35.21 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 004294 128 GLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLR 207 (763)
Q Consensus 128 gL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk 207 (763)
||+..+|.-|=|-||+-.-|.-.......-..+.+.|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 7888888878777765544443444444444556667667666655 4577888999999
Q ss_pred HHHhHHHH
Q 004294 208 EEIDRISA 215 (763)
Q Consensus 208 ~el~r~~~ 215 (763)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88886654
No 109
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=72.40 E-value=3.2 Score=42.06 Aligned_cols=199 Identities=14% Similarity=0.188 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCcccccCCCCCceEEEEccCCCCCCCCCceEE-EEEEEeecc-CChhhHhhhhcccCc
Q 004294 527 MLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVL-SAATSFWLP-VPPKRVFDFLRDENT 604 (763)
Q Consensus 527 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~G~vl-~A~tS~wLp-v~p~~vf~FLrd~~~ 604 (763)
+-++.+..+..+-..+ ....+|..... .++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|...
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~~--~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~ 98 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVVE--EGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVDV 98 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEEE--ETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEEe--CCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcch
Confidence 3344444444444322 23468987753 4679999988632 2 3321 123334445 999999999999999
Q ss_pred cchhhhccCCCceeEEeecccCCCCCceeEEEEeeeccCCCC-CCCceEEEEecccC----CCC--c-EEEEeecchhhh
Q 004294 605 RSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNCLQSANS-SQSNMLILQESCTD----PTA--S-FVIYAPVDIVAM 676 (763)
Q Consensus 605 R~eWdils~G~~vqe~~~ia~g~~~gn~vSll~~~~~~~~~~-~~~~~liLQes~~D----~sg--s-~vVyAPvD~~~m 676 (763)
|.+||-..- .++.+-+|. .++.|.-.... ..-+ ...+..++.....+ ..| . +++.-.|+-+.+
T Consensus 99 r~~Wd~~~~--~~~vle~i~----~~~~i~y~~~~---~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~ 169 (255)
T 2e3n_A 99 RNDWETTIE--NFHVVETLA----DNAIIIYQTHK---RVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSA 169 (255)
T ss_dssp HHHHCCSEE--EEEEEEEEE----TTEEEEEEEEC---CCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTS
T ss_pred Hhhhhhhcc--eeEEEEEcC----CCCEEEEEEee---cCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCC
Confidence 999994321 123333331 22222222222 1111 22345555543322 322 3 444445655421
Q ss_pred hhhhcCCCCCCcc-----ccCCccEEccC-CC-CCCCCCCCCCCCCCceeEEeeehhccC-Ccccccccchhhhhhhhhh
Q 004294 677 NVVLNGGDPDYVA-----LLPSGFAILPD-GT-SLHGANIGEAASGGSLLTVAFQILVDS-VPTAKLSLGSVATVNNLIA 748 (763)
Q Consensus 677 ~~vm~G~d~~~v~-----lLPSGF~I~Pd-g~-~~~~~~~~~~~~~gsllTvaFQil~~~-~~~a~~~~~sv~tv~~li~ 748 (763)
- ..+.+|- .|.+||.|.|- |. .... ..++|.+|.-.|+=... .|..-.+ .+ +...+-
T Consensus 170 P-----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~------~~~~t~vt~~~~~Dp~G~iP~~lvn--~~--~~~~~~ 234 (255)
T 2e3n_A 170 P-----LNNRCVRAKINVAMICQTLVSPPEGNQEISR------DNILCKITYVANVNPGGWAPASVLR--AV--AKREYP 234 (255)
T ss_dssp C-----CCSSSEECEEEEEEEEEEEEC---CCCCCCG------GGEEEEEEEEEEEECSSCCCHHHHH--HH--HHHHHH
T ss_pred C-----CCCCCEEEEEEeeeeeeeEeccCCCCccccc------CCCcEEEEEEEEeCCCCccCHHHHH--HH--Hhcccc
Confidence 1 1122222 36789999883 22 1110 12578888887775543 3321111 11 123344
Q ss_pred HHHHHHHHhh
Q 004294 749 CTVERIKASL 758 (763)
Q Consensus 749 ~tv~~Ik~al 758 (763)
.++++++..+
T Consensus 235 ~~l~~L~k~v 244 (255)
T 2e3n_A 235 KFLKRFTSYV 244 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 110
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.02 E-value=4.6 Score=32.81 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYRE 173 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~ 173 (763)
......|..+.+.|..+|..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777555
No 111
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.83 E-value=12 Score=30.51 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYREA 174 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a 174 (763)
......|..+.+.|..+|..|...
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888876664
No 112
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.98 E-value=8.9 Score=32.91 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=13.1
Q ss_pred hhhhHHHhHHHHhHHHHHHHHHHHHhHHHH
Q 004294 142 RTQMKTQHERHENTQLRTENEKLRADNMRY 171 (763)
Q Consensus 142 RaK~Kr~~~r~e~~~l~~ene~L~~en~~l 171 (763)
|++.|+++ ....+....+.|..||..|
T Consensus 29 rSR~krk~---r~~e~~~r~~~L~~eN~~L 55 (78)
T 1gu4_A 29 KSRDKAKM---RNLETQHKVLELTAENERL 55 (78)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44555433 2333445555565565553
No 113
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=65.97 E-value=6.7 Score=35.00 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q 004294 177 NASCPNCGGPT 187 (763)
Q Consensus 177 ~~~C~~Cgg~~ 187 (763)
...||.||.+.
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 45699999764
No 114
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.32 E-value=17 Score=28.84 Aligned_cols=39 Identities=36% Similarity=0.482 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHH
Q 004294 155 TQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRIS 214 (763)
Q Consensus 155 ~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~ 214 (763)
..++.++..|.+.|.+|.+.+ ++-+.|...|++|++++.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L---------------------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhh
Confidence 346777778888888877766 557788899999988764
No 115
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.67 E-value=4.4 Score=41.90 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHh
Q 004294 197 HHLRLENARLREEID 211 (763)
Q Consensus 197 ~~L~~En~~Lk~el~ 211 (763)
++|+.||++||+.|.
T Consensus 46 ~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 46 ADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 447788888887755
No 116
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=58.46 E-value=14 Score=30.28 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHhHHH
Q 004294 199 LRLENARLREEIDRIS 214 (763)
Q Consensus 199 L~~En~~Lk~el~r~~ 214 (763)
|..||..|+.|+.++.
T Consensus 42 L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 42 LLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 117
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.18 E-value=3.5 Score=36.81 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=35.2
Q ss_pred hHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHh
Q 004294 149 HERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEID 211 (763)
Q Consensus 149 ~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~ 211 (763)
.--+++-.|....+.+..||.+++...... | +-..++..+..+|+.||.+|++|-+
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777766643211 1 1123556678888888888888754
No 118
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.65 E-value=21 Score=30.03 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=9.7
Q ss_pred HHHhHHHHHHHHHHHHhHHH
Q 004294 151 RHENTQLRTENEKLRADNMR 170 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~ 170 (763)
.+....|..+.+.|..++..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554444
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.30 E-value=33 Score=26.16 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=16.3
Q ss_pred chhhhHHHHHHHHHHHhHHHHH
Q 004294 195 DEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~~ 216 (763)
++|.|..-.+.|++|+.|+..-
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5566777778888888887653
No 120
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.57 E-value=11 Score=25.56 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHhHHH
Q 004294 197 HHLRLENARLREEIDRIS 214 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~~ 214 (763)
.+|+..|++||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 579999999999987553
No 121
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=49.23 E-value=1.5e+02 Score=26.78 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=63.5
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEE--EEeeeee
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYY--VRYCKQH 417 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~f--LRyckq~ 417 (763)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| .. ...+.+ +.-|.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~~---~~~~~~--~~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------KY---KADLQI--GIAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------EE---EEEEEE--CCGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------eE---EEEEEE--EeeeEEEEEEEEEEEEecC
Confidence 4567778999999999999999999865 345555321 11 111111 1112222222 2444444
Q ss_pred CCceEEEEEEecCCCCCCCCceeeecCccceEEecCCCceEEEEEEeeeecCcccchhhHhhhh
Q 004294 418 GEGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVS 481 (763)
Q Consensus 418 ~~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~ 481 (763)
+...|++.-..-+. + ++.. .---+-+.+..+|.|+|+|.-.+++... +..+..+++.
T Consensus 72 ~~~~~~~~~~~~~~--~-~~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~~ 128 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG--P-GFVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRMLG 128 (162)
T ss_dssp TTTEEEEEEEEEET--T-EEEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHHH
T ss_pred CCcEEEEEEEecCC--C-ccEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHHH
Confidence 45555544333221 1 1111 1112335666778899999887777533 3455555553
No 122
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=47.43 E-value=7.9 Score=30.40 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeeccc
Q 004294 94 YHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 139 (763)
Q Consensus 94 RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQ 139 (763)
|..||+++.......++.. ........++|+++|+++.+|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3468998877775555433 22122256899999999999999964
No 123
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=46.68 E-value=1.1e+02 Score=28.74 Aligned_cols=112 Identities=10% Similarity=0.127 Sum_probs=60.6
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+..|...+.++-++|.|-..| +-+|.++. +++++ .|.+++.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~---s~e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIK---SCKKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCC---CEEEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceE---EEEEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 3456667889999999999999 88998754 33444 34444445787665 1 1 1233 2232221100
Q ss_pred CceEEEEEEecCCCCCCCCceeeecCccceEEecC-CCceEEEEEEeeeecC
Q 004294 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMP-NGYSKVTWVEHVEVDD 469 (763)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~-nG~skVtwVeH~e~d~ 469 (763)
-=+|-|++-.+ +..--..+..=+=.-+.+.+ +|.|.|+|-=.++..+
T Consensus 71 ~~sY~ii~g~l----~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPS----PVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECST----TSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCC----cccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 11455555211 10000011222222345555 7899999998888764
No 124
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=45.50 E-value=12 Score=35.64 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=27.9
Q ss_pred EEEEEEeeccCChhhHhhhhcccCccchhhh
Q 004294 580 LSAATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 580 l~A~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
.+...|+-+..||+.||+|++|...-.+|.-
T Consensus 27 ~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 27 QSRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred cceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 3468899999999999999999999999984
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.29 E-value=29 Score=27.53 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=7.6
Q ss_pred chhhhHHHHHHHHHHHh
Q 004294 195 DEHHLRLENARLREEID 211 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~ 211 (763)
+...|+.||+.||.++.
T Consensus 20 d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 126
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.72 E-value=25 Score=36.43 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 157 LRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 157 l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
++.+++.|.+.|..|.+++ ++++.|..+||+|++++..
T Consensus 59 L~~ql~~L~arNe~L~~~L---------------------k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcC
Confidence 4455555555666555543 5588899999999998765
No 127
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=42.84 E-value=16 Score=32.67 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.0
Q ss_pred CCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhh
Q 004294 93 RYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT 143 (763)
Q Consensus 93 ~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRa 143 (763)
+|.+||.++...+-..+....... ..++|+++|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 466899999888877775554443 336899999999999999765443
No 128
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=42.78 E-value=12 Score=31.83 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=31.2
Q ss_pred CCCCCcCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecc
Q 004294 91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 138 (763)
Q Consensus 91 kR~RtrfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWF 138 (763)
|+.+..|+.++....-..+... ....++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 4456689998866555556432 135688999999999999885
No 129
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=39.31 E-value=2.8 Score=38.09 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=38.3
Q ss_pred CCCCcceeecccchhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 004294 128 GLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLR 207 (763)
Q Consensus 128 gL~~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk 207 (763)
||++.|+.-.=|-||.-.-|.-.+.....-.++.+.|..++ ..+..+.++|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~---------------------~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQK---------------------AELQQEVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------TTTSSTTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 67776666555545444333333333333333444444443 345567788999999999
Q ss_pred HHHhHHHH
Q 004294 208 EEIDRISA 215 (763)
Q Consensus 208 ~el~r~~~ 215 (763)
.|++.+..
T Consensus 86 ~E~~~lk~ 93 (107)
T 3a5t_A 86 LELDALRS 93 (107)
T ss_dssp HTTTSSSS
T ss_pred HHHHHHHH
Confidence 98876543
No 130
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.62 E-value=52 Score=28.69 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=11.1
Q ss_pred chhhhHHHHHHHHHHHhHHHHH
Q 004294 195 DEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~~ 216 (763)
+..+|+.+...|++|+..+..+
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 131
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.07 E-value=86 Score=27.19 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHh
Q 004294 197 HHLRLENARLREEIDRISAIAA 218 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~~~~~~ 218 (763)
.+|..|++.||++++++..++.
T Consensus 56 e~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 56 EQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888887777654
No 132
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=35.95 E-value=2.6e+02 Score=25.58 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+..|...+.++-++|.|-+.|.+-+|.| ...+++ .| |. .|.+. +.
T Consensus 6 ~si~I~Ap~~~VW~~l~d~~~~~~w~p~v----~~~~~~-~G--G~--------------------------vR~~~-~~ 51 (146)
T 3f08_A 6 TSMEIFGSTEQVWQLIGGFNSLPDWLPYI----PSSKLT-EG--GR--------------------------VRHLA-NP 51 (146)
T ss_dssp EEEEESSCHHHHHHHHCSTTCHHHHCTTC----CEEEEE-GG--GT--------------------------EEEEE-CT
T ss_pred EEEEEeCCHHHHHHHHhccccHHHhCCCe----EEEEEe-CC--Ce--------------------------EEEEE-eC
Q ss_pred CceEEEEE-EecCCCCCC-------CCceeeecCccceEEe-cCCCceEEEEEEeeeecCccc---chhhHhhhhchhh
Q 004294 419 EGTWAVVD-VSLDNLRPS-------PAVRCRRRPSGCLIQE-MPNGYSKVTWVEHVEVDDRGV---HNLYKQLVSTGNA 485 (763)
Q Consensus 419 ~g~w~VvD-vS~d~~~~~-------~~~~~~~lPSGclIq~-~~nG~skVtwVeH~e~d~~~v---~~l~rpl~~Sg~a 485 (763)
+|.|+.-- ..+|.-.-. .....+..=+=.-+.+ -.+|+|.|+|.-.++-+.-.- -..++.+|..|+.
T Consensus 52 ~G~~~~Erl~~~D~~~~~~~y~iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g~~~~~~~~~~~~~~~~~L~ 130 (146)
T 3f08_A 52 DGETIIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSDEEAINLVHGIYSDGLK 130 (146)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHHH
No 133
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.93 E-value=43 Score=24.61 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=5.7
Q ss_pred hhhHHHHHHHH
Q 004294 197 HHLRLENARLR 207 (763)
Q Consensus 197 ~~L~~En~~Lk 207 (763)
.+|+.||..|+
T Consensus 24 a~Lk~eN~eL~ 34 (37)
T 1t6f_A 24 ARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhHHHH
Confidence 44555555544
No 134
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=35.88 E-value=14 Score=32.33 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=24.9
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
...+..++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~ 31 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYL 31 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGC
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhc
Confidence 3467788999999999999999999996
No 135
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=35.84 E-value=13 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=30.2
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchh
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 142 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRR 142 (763)
.++.++...+...+... ....++|+.+|++...|..|++...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 36677766666666543 2356899999999999999986543
No 136
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.60 E-value=1.1e+02 Score=27.34 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHHhcCCC---CCCCCC-CCCCC---CCCcchhhhHHHHHHHHHHHhHHHHHHhh
Q 004294 151 RHENTQLRTENEKLRADNMRYREALSNAS---CPNCGG-PTAIG---EMSFDEHHLRLENARLREEIDRISAIAAK 219 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a~~~~~---C~~Cgg-~~~~~---~~~~e~~~L~~En~~Lk~el~r~~~~~~~ 219 (763)
+++...|+.|+++|+.++..|.-.+.+.. ..+|.. ...|- ......++.+.+..+|+.|++++.....+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655554322 222211 00110 01123445677778888888888775543
No 137
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.14 E-value=23 Score=30.04 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=34.6
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHH
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQ 148 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~ 148 (763)
.+++.|...|...|-.. ..-.++|+.+|++...|+.+...-|.|.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888887765433 2356899999999999998876555555543
No 138
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=31.59 E-value=17 Score=32.98 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.6
Q ss_pred EEEEEEeeccCChhhHhhhhcccCccchhh
Q 004294 580 LSAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 580 l~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
.....+..++.||++||++|.|..+..+|-
T Consensus 13 m~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 13 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 345678889999999999999999999996
No 139
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.57 E-value=23 Score=36.53 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 004294 200 RLENARLREEIDRISAIA 217 (763)
Q Consensus 200 ~~En~~Lk~el~r~~~~~ 217 (763)
..++..|++|.+|+..++
T Consensus 42 ~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 42 ESEVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 367778888888888753
No 140
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=31.20 E-value=15 Score=33.88 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=25.2
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
...++.+|.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467888999999999999999999996
No 141
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=30.80 E-value=24 Score=31.99 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=25.2
Q ss_pred EEEeeccCChhhHhhhhcccCccchhhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWDI 610 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWdi 610 (763)
..|..+|.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4678899999999999999999999974
No 142
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.67 E-value=39 Score=24.42 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.9
Q ss_pred chhhhHHHHHHHHHHHhHHHHHH
Q 004294 195 DEHHLRLENARLREEIDRISAIA 217 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~~~ 217 (763)
.++.|..||..|++|+.|+..+.
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 35668899999999999988854
No 143
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.39 E-value=39 Score=26.63 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHhhh
Q 004294 195 DEHHLRLENARLREEIDRISAIAAKY 220 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~~~~~~ 220 (763)
+++-|+.||..||+||+.-+...+|.
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
No 144
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.23 E-value=28 Score=24.74 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=29.0
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccc
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 140 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQN 140 (763)
.++.++...+...+... . ...++|+.+|++...|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47787776665656433 2 3568999999999999999754
No 145
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.17 E-value=32 Score=42.52 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=38.9
Q ss_pred hHHHhHHHHhHHHHHHHHHHHHhHHHHHHHhcCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHhHHHH
Q 004294 145 MKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 145 ~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~~~~~C~~Cgg~~~~~~~~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
.+.+..+++...++.+++++..|++.+.+++.... .++.....+|..||+.|+++++.+..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666667777766666666542111 23445666788999999998888774
No 146
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.97 E-value=50 Score=29.56 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=37.9
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHh
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQH 149 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~ 149 (763)
.+++.|...+...|... ..-.++|..+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 57888888888876543 23568999999999999999887776666544
No 147
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=29.92 E-value=3.2e+02 Score=24.81 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=68.3
Q ss_pred cceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeeeehhhhcCCCCccCceeEEEEeeeeeC
Q 004294 339 ETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHG 418 (763)
Q Consensus 339 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SpLvp~Re~~fLRyckq~~ 418 (763)
.+..|...+..+-+.+.|.+.|-+.+|.+ ..++++.. |... +.++ + |.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~-------~~~~-~~~~--~--~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDD-------KRSR-WTVE--A--PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSS-------SEEE-EEEE--C--CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecC-------CeeE-EEEE--e--cCCcceEEEEEEEEEecC
Confidence 45567778999999999999999999866 34555542 1111 1111 1 221245556677776655
Q ss_pred CceEEEEEEecCCCCCCCCceeeecCccceEEecC-CCceEEEEEEeeeecCcccchhhHhhhhchhhHHHHHHHHHHHH
Q 004294 419 EGTWAVVDVSLDNLRPSPAVRCRRRPSGCLIQEMP-NGYSKVTWVEHVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDR 497 (763)
Q Consensus 419 ~g~w~VvDvS~d~~~~~~~~~~~~lPSGclIq~~~-nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgA~rWlatLqR 497 (763)
+... +-.++++... .+... +-.++.+ +|.|+|++.-+.+....-+-.++-+++. -.+++++.+-
T Consensus 72 ~~~i--~~~~~~g~~~-~~~g~------~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~----~~~~~~v~~~-- 136 (155)
T 3ggn_A 72 GKRI--AWRSLPGARI-ENSGE------VLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFN----QEPSQQLRDD-- 136 (155)
T ss_dssp TTEE--EEEECTTCSS-CEEEE------EEEEECSSSSCEEEEEEEEEC--------------------CHHHHHHHH--
T ss_pred CCEE--EEEECCCCCc-ceEEE------EEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhh----hhHHHHHHHH--
Confidence 5442 2334443210 11111 2346674 5689999977666543233333333321 1146665543
Q ss_pred HHHHHHHHHhc
Q 004294 498 QCERLASVMAT 508 (763)
Q Consensus 498 qcerla~~~~~ 508 (763)
++|+..++-+
T Consensus 137 -l~r~k~~~e~ 146 (155)
T 3ggn_A 137 -LMRFKREQEL 146 (155)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHh
Confidence 5555554443
No 148
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.23 E-value=1e+02 Score=33.86 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=18.8
Q ss_pred CcchhhhHHHHHHHHHHHhHHHH
Q 004294 193 SFDEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 193 ~~e~~~L~~En~~Lk~el~r~~~ 215 (763)
+.+.++|+.||++++++++.+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhh
Confidence 34678999999999999987654
No 149
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=28.98 E-value=24 Score=32.59 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=26.1
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhh
Q 004294 581 SAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
....|+.++.|++.||+|+.|..+-.+|-
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~ 33 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLM 33 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHS
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHh
Confidence 34578889999999999999999999996
No 150
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.36 E-value=1.6e+02 Score=25.54 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=5.4
Q ss_pred HHHHHHHHhHHH
Q 004294 159 TENEKLRADNMR 170 (763)
Q Consensus 159 ~ene~L~~en~~ 170 (763)
+||++|+.+...
T Consensus 38 ~EN~~Lh~~ie~ 49 (83)
T 1wlq_A 38 KENEKLHKEIEQ 49 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344454444333
No 151
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=27.99 E-value=31 Score=30.51 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=25.1
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchh
Q 004294 581 SAATSFWLPVPPKRVFDFLRDENTRSEW 608 (763)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eW 608 (763)
....+..++.||++||++|.|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3456788899999999999999999999
No 152
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.79 E-value=56 Score=29.12 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=37.8
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
.+++.|...+...|-.. ..-.++|..+|+++..|+.+...-|.+.|+...+
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888775443 2356899999999999999887766666654433
No 153
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.53 E-value=2.4e+02 Score=24.03 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHhHHHHH
Q 004294 197 HHLRLENARLREEIDRISAI 216 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~~~~ 216 (763)
..|..||..|+.+++.+..-
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666655543
No 154
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=27.22 E-value=33 Score=30.59 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.3
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 457788999999999999999999994
No 155
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.22 E-value=76 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=22.3
Q ss_pred chhhhhHHHhHHHHhHHHHHHHHHHHHhHHHHHHHh
Q 004294 140 NKRTQMKTQHERHENTQLRTENEKLRADNMRYREAL 175 (763)
Q Consensus 140 NRRaK~Kr~~~r~e~~~l~~ene~L~~en~~l~~a~ 175 (763)
+||.|++-.+...+-+.++.-.+.|+.-...|.+.+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456666666666666666666666666666655544
No 156
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.56 E-value=74 Score=25.21 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHhHHHH
Q 004294 196 EHHLRLENARLREEIDRISA 215 (763)
Q Consensus 196 ~~~L~~En~~Lk~el~r~~~ 215 (763)
+.+|..||..|++++..+..
T Consensus 31 v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777776554
No 157
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.44 E-value=1.1e+02 Score=34.40 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=13.7
Q ss_pred chhhhHHHHHHHHHHHhHHHH
Q 004294 195 DEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~ 215 (763)
..++|+.|++.+++|+..+-.
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777766554
No 158
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.43 E-value=1.7e+02 Score=25.12 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHhHHHHH
Q 004294 197 HHLRLENARLREEIDRISAI 216 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r~~~~ 216 (763)
.+|+.||..|++-++.+..+
T Consensus 51 ~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 51 ARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777777776666555443
No 159
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.13 E-value=1e+02 Score=28.83 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=11.5
Q ss_pred chhhhHHHHHHHHHHHhHHHH
Q 004294 195 DEHHLRLENARLREEIDRISA 215 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~ 215 (763)
+...|+.++..|++++.++.+
T Consensus 111 e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555543
No 160
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=23.06 E-value=38 Score=30.71 Aligned_cols=28 Identities=4% Similarity=0.146 Sum_probs=24.3
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456778999999999999999999994
No 161
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.63 E-value=3.2 Score=39.72 Aligned_cols=29 Identities=3% Similarity=-0.104 Sum_probs=22.2
Q ss_pred CCCCCCcCChHHHHHHHHHHhcCCCCCHH
Q 004294 90 KKKRYHRHTQHQIQEMEAFFKECPHPDDK 118 (763)
Q Consensus 90 kkR~RtrfT~eQl~~LE~~F~~~~~Ps~~ 118 (763)
.||.|+.|+..|++.|++.|+.+++|...
T Consensus 136 ~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 136 GSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -----EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 47888999999999999999999998753
No 162
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=22.44 E-value=4.1e+02 Score=23.60 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=32.1
Q ss_pred ceEEEechhhHHHHhcChhhHHhhhccccccceEeEEeecccCCCCCCeeeee
Q 004294 340 TAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVM 392 (763)
Q Consensus 340 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm 392 (763)
+..|...+.++-+.|.|...|.+-+|.+ ..++++..+ . ..-|++..+
T Consensus 7 si~I~ap~e~Vw~~l~d~~~~~~w~p~v----~~~~~~~g~-~-~~~G~~r~~ 53 (151)
T 2le1_A 7 SVEVAAPAADVWTLVGDFSAIHRWHPQV----SAPTLRGAS-P-HTPGAERVF 53 (151)
T ss_dssp EEEESSCHHHHHHHHTTSGGGGGTCTTC----CCEEEESSC-T-TSTTCEEEE
T ss_pred EEEecCCHHHHHHHHhCcCcHHHhcCCc----eEEEEECCC-C-CCCCeEEEE
Confidence 4456678899999999999998889975 345555543 1 124555433
No 163
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.07 E-value=1.6e+02 Score=23.61 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHhh
Q 004294 196 EHHLRLENARLREEIDRISAIAAK 219 (763)
Q Consensus 196 ~~~L~~En~~Lk~el~r~~~~~~~ 219 (763)
.++|...+....+|+.|+..+...
T Consensus 27 v~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999886644
No 164
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=22.00 E-value=44 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.521 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHHHhHH
Q 004294 102 IQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHER 151 (763)
Q Consensus 102 l~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr~~~r 151 (763)
+....-.|+.+|||+..--.+ |+ .|||.+|++.|.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHH
Confidence 445566689999998653211 21 5899999886543
No 165
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=21.99 E-value=42 Score=31.57 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=26.3
Q ss_pred EEEEEeeccCChhhHhhhhcccCccchhh
Q 004294 581 SAATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 581 ~A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45678899999999999999999999996
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.65 E-value=2e+02 Score=28.76 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHhH---HHHHHhhhcCccccc
Q 004294 197 HHLRLENARLREEIDR---ISAIAAKYVGKPVVN 227 (763)
Q Consensus 197 ~~L~~En~~Lk~el~r---~~~~~~~~~g~~~~~ 227 (763)
..|+.||..||.=.+. +..+..+++|.+...
T Consensus 132 ~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~ 165 (209)
T 2wvr_A 132 ARLKKENKELAEVAEHVQYMAELIERLNGEPLDN 165 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 5577777777654443 444455666665433
No 167
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.32 E-value=93 Score=32.19 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHhHHHHHHH
Q 004294 151 RHENTQLRTENEKLRADNMRYREA 174 (763)
Q Consensus 151 r~e~~~l~~ene~L~~en~~l~~a 174 (763)
+.+...+.+.|++|.++.+.++.+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666665555553
No 168
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.14 E-value=14 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcchhhhHHHHHHHHHHHhH
Q 004294 184 GGPTAIGEMSFDEHHLRLENARLREEIDR 212 (763)
Q Consensus 184 gg~~~~~~~~~e~~~L~~En~~Lk~el~r 212 (763)
++.+..+++..+.++|+.||..||+++.+
T Consensus 5 r~~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 5 KPDKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
No 169
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=21.08 E-value=35 Score=30.68 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=24.4
Q ss_pred EEEeeccCChhhHhhhhcccCccchhh
Q 004294 583 ATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 583 ~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
..+..++.||++||+.|-|..+..+|-
T Consensus 11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 11 KQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 467788999999999999999999996
No 170
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.08 E-value=32 Score=26.93 Aligned_cols=47 Identities=9% Similarity=-0.070 Sum_probs=34.0
Q ss_pred cCChHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCcceeecccchhhhhHH
Q 004294 96 RHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 147 (763)
Q Consensus 96 rfT~eQl~~LE~~F~~~~~Ps~~~r~~LA~~LgL~~rQVkvWFQNRRaK~Kr 147 (763)
.+++.+...+...|... ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888999998876443 235689999999999998876544444443
No 171
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=20.96 E-value=70 Score=28.98 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=9.3
Q ss_pred chhhhHHHHHHHHHHHhHHHHH
Q 004294 195 DEHHLRLENARLREEIDRISAI 216 (763)
Q Consensus 195 e~~~L~~En~~Lk~el~r~~~~ 216 (763)
+..+|+.|...+|.+++.+..+
T Consensus 80 En~~l~~E~~~lk~k~e~L~~~ 101 (107)
T 3a5t_A 80 ENASMKLELDALRSKYEALQNF 101 (107)
T ss_dssp TTSHHHHTTTSSSSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666655543
No 172
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=20.85 E-value=56 Score=29.62 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.5
Q ss_pred EEEEeeccCChhhHhhhhcccCccchhh
Q 004294 582 AATSFWLPVPPKRVFDFLRDENTRSEWD 609 (763)
Q Consensus 582 A~tS~wLpv~p~~vf~FLrd~~~R~eWd 609 (763)
...++-++.||.+||++|.|-.+-.+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567888999999999999988888996
No 173
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.81 E-value=2.9e+02 Score=23.02 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhHHH
Q 004294 199 LRLENARLREEIDRIS 214 (763)
Q Consensus 199 L~~En~~Lk~el~r~~ 214 (763)
|..||..|++++..+.
T Consensus 48 l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
Done!