BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004295
(763 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV 694
G + ECPICL A +AV TPC HR C+ C++ S + CPV
Sbjct: 4 GSKYECPICLMALREAVQTPCGHRFCKACIIKSIRD-AGHKCPV 46
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 655 ECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV 694
ECPICL A +AV TPC HR C+ C++ S + CPV
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPV 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 655 ECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV 694
ECPICL A +AV TPC HR C+ C++ S + CPV
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPV 58
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 641 VQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCREC---LLGSWKTPTSGLCPVCRK 697
VQ V+ +QK ECPICLE ++ V T C H C+ C LL K P+ CP+C+
Sbjct: 11 VQNVINAMQKI--LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ--CPLCKN 66
Query: 698 TISRQDL 704
I+++ L
Sbjct: 67 DITKRSL 73
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 655 ECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV 694
ECPICL A +AV TPC HR C+ C++ S + CPV
Sbjct: 27 ECPICLMALREAVQTPCGHRFCKACIIKSIRD-AGHKCPV 65
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWK----TPTSGLCPVCR 696
E+ CPICLE ++ V C H CR C+ +++ T G CPVCR
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 488 LLGQWNKLIQK---PYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
LLG +++ K P ++GD + +++I+ P +LRRTK + I LP
Sbjct: 206 LLGSYSEFKSKFATPIKKGDNXAKEELKAIISPFILRRTKY----DKAIINDLPDKIETN 261
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+YC LT + Y+A + D R IL LL+L+Q DHP L+
Sbjct: 262 VYCNLTPEQAAXYKAEVENLFNNIDSVTGIKR----KGXILSTLLKLKQIVDHPALL 314
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 488 LLGQWNKLIQK---PYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
LLG +++ K P ++GD + +++I+ P +LRRTK + I LP
Sbjct: 206 LLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKY----DKAIINDLPDKIETN 261
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
+YC LT + Y+A + D R IL LL+L+Q DHP L+
Sbjct: 262 VYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR----KGMILSTLLKLKQIVDHPALL 314
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 651 GEQGECPICLEAFEDAVL-------TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702
G CPIC++ + + V T C H C +CL S K + CP CRK I+ +
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCRKKINHK 57
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 656 CPICLEAFEDAVL-------TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702
CPIC++ + + V T C H C +CL S K + CP CRK I+ +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCRKKINHK 61
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 656 CPICLEAFEDAVL-------TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702
CPIC++ + + V T C H C +CL S K + CP CRK I+ +
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCRKKINHK 126
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 656 CPICLEAFEDAVL-------TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702
CPIC++ + + V T C H C +CL S K + CP CRK I+ +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCRKKINHK 64
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 656 CPICLEAFEDAVL-------TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702
CPIC++ + + V T C H C +CL S K + CP CRK I+ +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--CPTCRKKINHK 69
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 655 ECPICLEAFEDAVLTP----CAHRLCRECLLGSWKTPTSGL-CPVCRK 697
ECPIC+E+F + L P C H +CR+CL + +G+ CP C K
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 11/50 (22%)
Query: 655 ECPICLEAFE--DAVLTPC--AHRLCRECLLGSW---KTPTSGLCPVCRK 697
ECP+C+E E D PC +++CR C W +T +GLCP CRK
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFC----WHRIRTDENGLCPACRK 47
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL +W+ CP CR I
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLT-AWQESDGQGCPFCRCEI 71
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL SW+ CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLT-SWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL SW+ CP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLT-SWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL SW+ CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLT-SWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL SW+ CP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLT-SWQESEGQGCPFCRCEI 377
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 656 CPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKT-ISRQDLITAPT 709
CPICL+ ++ + T C HR C +C++ + ++ CP CRK +S++ L P
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKLVSKRSLRPDPN 111
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 612 DLNKLAKRF---LKGSSNALE--GEDKDVPSRAYVQEVVEELQKGEQGE--CPICLEAFE 664
+LN+ K F ++ + LE E+K+ +A +EV+ + + E C IC E F
Sbjct: 6 ELNRSKKDFEAIIQAKNKELEQTKEEKE-KMQAQKEEVLSHMNDVLENELQCIICSEYFI 64
Query: 665 DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
+AV CAH C C + W CP+CRK I
Sbjct: 65 EAVTLNCAHSFCSYC-INEW-MKRKIECPICRKDI 97
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL +W+ CP CR I
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLT-AWQESDGQGCPFCRCEI 383
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 612 DLNKLAKRF---LKGSSNALE--GEDKDVPSRAYVQEVVEELQKGEQGE--CPICLEAFE 664
+LN+ K F ++ + LE E+K+ +A +EV+ + + E C IC E F
Sbjct: 6 ELNRSKKDFEAIIQAKNKELEQTKEEKE-KMQAQKEEVLSHMNDVLENELQCIICSEYFI 64
Query: 665 DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
+AV CAH C C + W CP+CRK I
Sbjct: 65 EAVTLNCAHSFCSYC-INEW-MKRKIECPICRKDI 97
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 643 EVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL-CPVCRKTISR 701
+ V +LQ E+ CPICL+ + V C H C +C+ +T CP+C+ ++ +
Sbjct: 12 QFVNKLQ--EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL-----CPVCRKTISRQDL 704
E+ CPICLE + + C H LCR C+ S K + + CPVC + S + L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 612 DLNKLAKRF---LKGSSNALE--GEDKDVPSRAYVQEVVEELQKGEQGE--CPICLEAFE 664
+LN+ K F ++ + LE E+K+ +A +EV+ + + E C IC E F
Sbjct: 17 ELNRSKKDFEAIIQAKNKELEQTKEEKE-KMQAQKEEVLSHMNDVLENELQCIICSEYFI 75
Query: 665 DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
+AV CAH C C + W CP+CRK I
Sbjct: 76 EAVTLNCAHSFCSYC-INEW-MKRKIECPICRKDI 108
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 656 CPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKT-ISRQDLITAP 708
CPICL+ ++ + T C HR C +C++ + ++ CP CRK +S++ L P
Sbjct: 56 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKLVSKRSLRPDP 109
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 656 CPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
CPICL+ ++ + T C HR C +C++ + ++ CP CRK +
Sbjct: 37 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-CPTCRKKL 80
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL SW+ CP CR I
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLT-SWQESEGQGCPFCRCEI 69
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700
+ +C IC+E + V PC H LC+ C + + S CP CR+ +S
Sbjct: 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVS 61
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
C IC E +D + PC H +C CL SW+ CP CR I
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLT-SWQESEGQGCPFCRCEI 72
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 643 EVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL-CPVC 695
+ V +LQ E+ CPICL+ + V C H C +C+ +T CP+C
Sbjct: 12 QFVNKLQ--EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 655 ECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTG 710
ECP+C E + E PC H C++ + S CPVCRK+++ Q+ T P G
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS--CPVCRKSLTGQNTATNPPG 73
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 650 KGEQGECPICLEAFE--DAVLTPC--AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705
K + ECP+C+E E D PC +++CR C +T +GLCP CRK +
Sbjct: 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCW-HRIRTDENGLCPACRKPYPEDPAV 66
Query: 706 TAP 708
P
Sbjct: 67 YKP 69
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 648 LQKGEQG-ECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706
L+K EQ C C E V T C H +C++CL S+K CP CR + Q+ I
Sbjct: 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFS-CPACRHDLG-QNYIM 129
Query: 707 APT 709
P
Sbjct: 130 IPN 132
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWK-TPTSGLC 692
C IC +AF++ V+T C H C C L ++ TP +C
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 55
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 641 VQEVVEELQKGEQGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTI 699
++E + LQ E+ C +C++ V PC H +C+EC P+ CP+CR I
Sbjct: 285 LEEQLRRLQ--EERTCKVCMDKEVSVVFIPCGHLVVCQEC------APSLRKCPICRGII 336
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPT----SGLCPVCRKTISRQDL 704
E+ CPICLE + C H C+ CL + K CPVCR + +++
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699
E+ C +CL+ V PC H +C EC P LCP+CR +
Sbjct: 12 EERTCKVCLDRAVSIVFVPCGHLVCAEC------APGLQLCPICRAPV 53
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 655 ECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT 709
EC IC++ D +L PCAH C++C + W CP+CR ++ + + P+
Sbjct: 17 ECCICMDGRADLIL-PCAHSFCQKC-IDKWSDRHRN-CPICRLQMTGANESSGPS 68
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 656 CPICLEAFEDAVLTPC-AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQ 714
C IC + DAV+ PC + C EC+ + CP C + D + A R
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA 75
Query: 715 VDIEKNWVESTK 726
V+ KN TK
Sbjct: 76 VNNFKNETGYTK 87
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 401 GGILADAMGLGKTVMTIALL 420
GILAD MGLGKTV T+A +
Sbjct: 257 NGILADEMGLGKTVQTVAFI 276
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 641 VQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700
+QE + +L+ E C +C E ++ PC H +C E ++ CPVCR +
Sbjct: 8 LQEKLRKLK--EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQS-----CPVCRSRVE 60
Query: 701 RQDLITAPT 709
+ PT
Sbjct: 61 HVQHVYLPT 69
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 489 LGQWNKL-----IQKPYEEGDERGLKLVQSILKPI--MLRRTKSSTDREGRPILVLPPAD 541
+G NK +QK ++EG+ G K V+++ KP+ + R K+ST P V P A
Sbjct: 191 VGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAA 250
Query: 542 MQVIYC 547
M V Y
Sbjct: 251 MGVRYV 256
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 296 VNDVDDVEPISDSDVDNIVGVGYSS----EIEEMEPPSTLKCEL--------RPYQKQAL 343
++D +E S + N++ + YS+ IEE+E K +L RP Q++
Sbjct: 190 LDDAKTIEKKIKSAISNLLNI-YSTLSGQSIEELERQYVFKADLAQVVIETLRPIQERYH 248
Query: 344 HWMVQLEKGRCLDEAA 359
HWM E R LDE A
Sbjct: 249 HWMESEELDRVLDEGA 264
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 2 GTKVTDEVLSTVRSVVGPEFSNMDIIRAL----HMANHDPAAAINIIFDTPNFKTPEIKP 57
G+ + + + T VGP+ ++ +R H+ D ++ I P F T +I
Sbjct: 31 GSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGA 90
Query: 58 LAARRKLIISKENEIRASSENGTLA-EAIAEGYSEGSEWWFVGWGDV 103
A ++ E ++ SS T+ +E + G W GWGDV
Sbjct: 91 DIA----LLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 2 GTKVTDEVLSTVRSVVGPEFSNMDIIRAL----HMANHDPAAAINIIFDTPNFKTPEIKP 57
G+ + + + T VGP+ ++ +R H+ D ++ I P F T +I
Sbjct: 31 GSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGA 90
Query: 58 LAARRKLIISKENEIRASSENGTLA-EAIAEGYSEGSEWWFVGWGDV 103
A ++ E ++ SS T+ +E + G W GWGDV
Sbjct: 91 DIA----LLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 2 GTKVTDEVLSTVRSVVGPEFSNMDIIRAL----HMANHDPAAAINIIFDTPNFKTPEIKP 57
G+ + + + T VGP+ ++ +R H+ D ++ I P F T +I
Sbjct: 31 GSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGA 90
Query: 58 LAARRKLIISKENEIRASSENGTLA-EAIAEGYSEGSEWWFVGWGDV 103
A ++ E ++ SS T+ +E + G W GWGDV
Sbjct: 91 DIA----LLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 630 GEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPT 688
G +DV S V+E + LQ E+ C +C++ V PC H +C++C P+
Sbjct: 4 GTTEDV-SDLPVEEQLRRLQ--EERTCKVCMDKEVSIVFIPCGHLVVCKDC------APS 54
Query: 689 SGLCPVCRKTI 699
CP+CR TI
Sbjct: 55 LRKCPICRSTI 65
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL-CPVC 695
+ C +CLE ++ V+ C H C+ C+ W+ CPVC
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 660 LEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ--DLITAPTGSR 712
L A +A LT +H C C +W+ S L P+C K+I RQ D +T G R
Sbjct: 245 LVALMEASLTYPSH--C--CAFANWRRQISELHPICNKSILRQEVDYMTQARGQR 295
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 636 PSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVC 695
P + ++ +V E Q C C E + T C H +C++CL S++ CP C
Sbjct: 41 PFQLFLSKVEETFQ------CICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFS-CPAC 93
Query: 696 RKTISR 701
R + R
Sbjct: 94 RYDLGR 99
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 651 GEQGECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCR 696
G++ CPIC + + A PC H + C+ S SG CPVCR
Sbjct: 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCV--SIWLQKSGTCPVCR 84
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704
C IC D V T C H CR C+L K CP CR DL
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTDL 73
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTG 710
E C IC E DA L P +LC + W T CP CR + ++L+
Sbjct: 20 AEVFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV----N 75
Query: 711 SRFQVDIEKNWVESTKIAVLLKELEN 736
R+ ++ + +++ ++ L K EN
Sbjct: 76 CRWAEEVTQQ-LDTLQLCSLTKHEEN 100
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 655 ECPICLEAFEDAVLTPCAHRLCRECLLG-SWKTPTSGLCPVCRKTISRQDLITAPT 709
EC ICL+ V PC H C C+ G SW C +CR+ I L + P+
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASW---LGKRCALCRQEIPEDFLDSGPS 69
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 656 CPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT 709
C IC DA +T C H C+ C++ + S CP C + + ++ P+
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQTQPLSGPS 70
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 656 CPICLEAFEDAVLTPCA-HRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT 709
C IC + DAV+ PC + C EC+ + CP C + D ++ P+
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS 72
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E+ L+ + SI+ ++RRT + LP QV+ C LT +K+ Y+ K++
Sbjct: 281 EQKLQELISIVNRCLIRRTSDILSK------YLPVKIEQVVCCNLTPLQKELYKLFLKQA 334
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
K VE + S L + L++ C+HP L+ +
Sbjct: 335 KP-----VESLQTGKISVSSLSSITSLKKLCNHPALIYEK 369
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 537 LPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCD 596
LP +YC LT + Y+A + D R IL LL+L+Q D
Sbjct: 25 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR----KGMILSTLLKLKQIVD 80
Query: 597 HPFLV 601
HP L+
Sbjct: 81 HPALL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,291,988
Number of Sequences: 62578
Number of extensions: 925195
Number of successful extensions: 2056
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 77
length of query: 763
length of database: 14,973,337
effective HSP length: 106
effective length of query: 657
effective length of database: 8,340,069
effective search space: 5479425333
effective search space used: 5479425333
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)