BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004295
(763 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/519 (57%), Positives = 361/519 (69%), Gaps = 20/519 (3%)
Query: 1 MGTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNFKTPEI----- 55
MGTKV+D+++STVRSVVG ++S+MDIIRALHMANHDP AAINIIFDTP+F P++
Sbjct: 1 MGTKVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSFAKPDVATPTP 60
Query: 56 -------KPLAARRKLIISKENEIRASSENGTLAEAIAEGYSE---GSEWWFVGWGDVPA 105
+ + + + A+ E++ G E G+EWWFVG ++
Sbjct: 61 SGSNGGKRVDSGLKGCTFGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAG 120
Query: 106 MSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEI 165
+ST KGRKL+ GDE+ FTFP + + F R R A+ S+IVRFSTKD+GEI
Sbjct: 121 LSTCKGRKLKSGDELVFTFPHSKGLKPETTPGKRGFGRGRPALRGASDIVRFSTKDSGEI 180
Query: 166 GRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATSL 225
GRIP+EW+RCLLPLVRDKK+ I G CKSAPE L IMDTI+LS+ VYINSSMF+KH ATS
Sbjct: 181 GRIPNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQKHSATSF 240
Query: 226 KAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLH 285
K SN+AE+S + HPLPNLFRLLG+ PFKKAEFTP D Y++KRPL SKDG + SLL
Sbjct: 241 KTASNTAEES--MFHPLPNLFRLLGLIPFKKAEFTPEDFYSKKRPLSSKDGSAIPTSLLQ 298
Query: 286 ANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHW 345
NK K + N ++ + ISD D+DNIVGVG SS ++EME P TL CELRPYQKQALHW
Sbjct: 299 LNKVKNMNQDANGDENEQCISDGDLDNIVGVGDSSGLKEMETPHTLLCELRPYQKQALHW 358
Query: 346 MVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILA 405
M QLEKG C DEAAT LHPCWEAY L D+RELVVYLN+F+G+ATI FPSTLQMARGGILA
Sbjct: 359 MTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQMARGGILA 418
Query: 406 DAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSI 465
DAMGLGKTVMTI+LLL HS + +G + D I SP + K K L
Sbjct: 419 DAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPV--KATKFLGF 476
Query: 466 DK-LIKQTNTLINGGTLIICPMTLLGQWNKLIQKPYEEG 503
DK L++Q + L NGG LI+CPMTLLGQW I+ + G
Sbjct: 477 DKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPG 515
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/283 (83%), Positives = 256/283 (90%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P WNKL+QKP+EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA
Sbjct: 619 LRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 678
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
D +VIYCEL+E+E+DFY+ALFKRSKVKFDQFVEQG++LHNYASILELLLRLRQCCDHPFL
Sbjct: 679 DARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFL 738
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL 660
VMSRGDT +YSDLNKL+KRFL G S+ LE E KDVPS A+VQEVVEEL+KGEQGECPICL
Sbjct: 739 VMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICL 798
Query: 661 EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKN 720
EA EDAVLTPCAHRLCRECLL SW+ TSGLCPVCR T+S+Q+LITAPT SRFQVD+EKN
Sbjct: 799 EALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAPTESRFQVDVEKN 858
Query: 721 WVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR 763
WVES+KI LL+ELE L SGSKSILFSQWTAFLDLLQIPLSR
Sbjct: 859 WVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSR 901
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/274 (63%), Positives = 226/274 (82%), Gaps = 5/274 (1%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W+KLIQKPYE GD RGLKL+++IL+P+MLRRTK + D+EG IL LPP D+QVI CE +E
Sbjct: 879 WSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSE 938
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
AE+DFY ALFKRSKV+FDQFV QG++LHNYA+ILELLLRLRQCC+HPFLVMSR D+Q Y+
Sbjct: 939 AERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYA 998
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
DL+ LA+RFL + +++ ++ PSRAY++EV+++L+ G ECPICLE+ +D VLTPC
Sbjct: 999 DLDSLARRFLDNNPDSV---SQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPC 1055
Query: 672 AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLL 731
AHR+CRECLL SW++P+ GLCP+CR + R +LI+ PT S F+VD+ KNW ES+K++ LL
Sbjct: 1056 AHRMCRECLLTSWRSPSCGLCPICRTILKRTELISCPTDSIFRVDVVKNWKESSKVSELL 1115
Query: 732 KELENLCLSGS--KSILFSQWTAFLDLLQIPLSR 763
K LE + SGS KSI+FSQWT+FLDLL+IPL R
Sbjct: 1116 KCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRR 1149
Score = 313 bits (802), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 184/400 (46%), Positives = 236/400 (59%), Gaps = 40/400 (10%)
Query: 94 EWWFVGWGDVPAMSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSE 153
+W+ VG V A STSKGRKL + V FTF S +K+ VP
Sbjct: 395 DWYLVGRSLVTATSTSKGRKLEDNEIVNFTF------SSVAKWK-----------VP--N 435
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
IVRFSTK GEIGR+P EWS + L+R KV++LG C +AP L +M I+L + YI+
Sbjct: 436 IVRFSTKRCGEIGRLPMEWSNWAVSLLRSGKVKMLGRCVAAPPFLTMMQEIMLYVSFYIH 495
Query: 214 SSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDS 273
SS+F ++ + GS+ +S HPL LF+ L I P++KAEFTP +L +RKR L+
Sbjct: 496 SSIFTDVSKSTWRIGSSPNLEST--LHPLLQLFKHLTIKPYQKAEFTPEELNSRKRSLNL 553
Query: 274 KDGCGLHASLLH-ANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLK 332
+D A+LL A + K + D E +S ++ +VG S +EEME PSTL
Sbjct: 554 EDDYDERAALLAIAKRRKGCQQSLEQNKDEEEAPESYMNRVVGAADSYNLEEMEAPSTLT 613
Query: 333 CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEF 392
C LRPYQKQAL+WM + EKG +++AA TLHPCWEAYR+ DER +YLN FSGEATI+F
Sbjct: 614 CNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNIFSGEATIQF 673
Query: 393 PSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQS 452
P+ QMARGGILADAMGLGKTVMTIAL+L ++P G E D+
Sbjct: 674 PTATQMARGGILADAMGLGKTVMTIALIL--------------ARPGRGNPENEDVLVAD 719
Query: 453 PNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
N K+ K + + T GGTLIICPM LL QW
Sbjct: 720 VNADKRNRKEIH----MALTTVKAKGGTLIICPMALLSQW 755
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 149 bits (376), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 39/317 (12%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E GD R L +VQ++L+P++LRRTK +G P+++LPP
Sbjct: 713 LGVEPWNNFSFWRTFITVPFESGDFMRALDVVQTVLEPLVLRRTKDMKTPDGEPLVLLPP 772
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++++ EL+E E+D Y +F ++K F Q VE G ++ + +I +LRLRQ C HP
Sbjct: 773 KQIEIVNVELSETERDVYNYIFNKAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPI 832
Query: 600 LVMSRGDTQD----------------YSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
LV +R D DL L F + A + ++ + A
Sbjct: 833 LVRNRDIVADEVEAGAAADAAAGLADDMDLESLITSFTAVTDKASKESNQTFGAHA---- 888
Query: 644 VVEELQKGEQGECPICLEA-FEDAVLTPCAHRLCRECLLGSWKTPTSGL----CPVCRKT 698
+E+++ + ECP+C E D +T C H C++CLL K T C CR+
Sbjct: 889 -LEQIRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRCFSCREP 947
Query: 699 ISRQDLI--------TAPTGSRFQVDIEKNWVE--STKIAVLLKELENLCLSGS--KSIL 746
I+++DL + + ++ +++ V S K+ L+ EL L KS++
Sbjct: 948 INKRDLFEVVRHDDDSDMMSKKPRISLQRVGVNASSAKVVALMSELRALRREHPKMKSVV 1007
Query: 747 FSQWTAFLDLLQIPLSR 763
FSQ+T+FL L++ L+R
Sbjct: 1008 FSQFTSFLSLIEPALTR 1024
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 227/549 (41%), Gaps = 103/549 (18%)
Query: 1 MGTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD--TPNFKTPEIKPL 58
+G KV+++VLS +RS G +N++ A+N+ FD F +P
Sbjct: 106 IGDKVSEDVLSAIRSNCG---NNIE-------------RAVNMYFDGTYKKFMKKSTRPA 149
Query: 59 AARRKLIISKENEIRASSENGTLAEAIAEGYSEGSEWWFVGWGDVPAMSTSKGRKL-RRG 117
R S R + +G I +E + +G V +T G L + G
Sbjct: 150 PPRPAASSS-----RTPNVSGERTIPIQTSKRMPNERYIGAFG-VEGWATRSGTNLLKHG 203
Query: 118 DEVTFTF------PLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHE 171
D V P KS PS+ F R+ V +VRF+T+ E+GR+ E
Sbjct: 204 DIVKIERQKRAPPPTKSKGKAGPVTPSRGFGAPRRQDV----VVRFTTQSGTEVGRLARE 259
Query: 172 WSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRV-YINSSMFRK-------HHAT 223
+ + L+ +K G APE L DTI L +R +NS+ F + A
Sbjct: 260 AANWVSALIDEKICRFEGTVVYAPERLRTNDTIFLQLRCSLLNSAFFSRPFQLADDRSAA 319
Query: 224 SLKAGSNSAEDSVSLCH-PLPNLFRLLGITPFKKAEFTPSDLY----------TRKRPLD 272
+ E ++ + L LF+ + + P T +++ +
Sbjct: 320 FFNQNETNDEKTLRMRQVALVKLFQEINLHPTLTNSATKDGRKGLLQAAEQDEEKQKEVK 379
Query: 273 SKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIE--EMEPPST 330
DG G + N + S++ +D +D E + +D + S + E EP T
Sbjct: 380 KSDGNGTN------NTKEANSSQSSDTEDGEELEQDQLDALYKKAQSFDFNTPEAEPADT 433
Query: 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATT---LHPCWEAY----RLLDEREL------ 377
LR YQKQALHWM+ EK DE + +HP WE Y + +DE +L
Sbjct: 434 FAMTLRKYQKQALHWMMAKEK----DEKSHREPLMHPLWEQYEWPLKDVDENDLPQIEGQ 489
Query: 378 -VVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSAS 436
Y+N +SG+ +++FP Q GGILAD MGLGKT+ ++L+ TH L QS
Sbjct: 490 SKFYVNPYSGDLSLDFPVQEQHCLGGILADEMGLGKTIQMLSLVHTHRSEVALEARQSVV 549
Query: 437 QPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLING--GTLIICPMTLLGQWNK 494
S+ + +L K + ++++ TL++ PM+LL QW
Sbjct: 550 ARSNVN---------------------QLTRLGKNSESILDAPCTTLVVAPMSLLSQWQS 588
Query: 495 LIQKPYEEG 503
+K ++G
Sbjct: 589 EAEKASKDG 597
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2
Length = 1245
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 159/333 (47%), Gaps = 52/333 (15%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E D R L +VQ++L+P++LRRTK+ EG P++ LP
Sbjct: 750 LQVEPWNNFSFWKTFITVPFESKDYVRALNVVQTVLEPLVLRRTKTMKTPEGEPLVPLPR 809
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
+ ++ EL+E E++ Y+ +F R+K F+ +E G +L ++++I +LRLRQ C HP
Sbjct: 810 RTIDIVEVELSEQEREIYDYIFTRAKRTFNDNIEAGTLLKSFSTIFAQILRLRQTCCHPI 869
Query: 600 LVMSR----------------GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
L ++ + +D DL +L RF NA E +D PS +
Sbjct: 870 LTRNKTIVADEEDAAATADAANELKDDMDLQELIDRFSASMENADTAEAQD-PSAKFTTH 928
Query: 644 VVEELQKGEQGECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCP----VCRKT 698
+ ++Q GECPIC E D +T C H C++CL + T P CR
Sbjct: 929 ALRQIQTESSGECPICSEEPMIDPAVTACWHSACKKCLEDYIRHQTDKGVPPRCFSCRAP 988
Query: 699 ISRQDLI-----TAPTGSRFQVDIEKNWVEST-----------------------KIAVL 730
++ +D+ +P+ + + D+ + S+ KI L
Sbjct: 989 VTSRDIFQVIRHQSPSSTPTETDLYSSTPASSPHPAPRISLRRIHPLSPSAHTSAKIHAL 1048
Query: 731 LKELENLCLSGSKSILFSQWTAFLDLLQIPLSR 763
+ L N + +KS++FSQ+T+FLDL+ L++
Sbjct: 1049 INHL-NRVPANTKSVVFSQFTSFLDLIGAQLTK 1080
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 168/381 (44%), Gaps = 69/381 (18%)
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
+ RF+ K EIGR+P E + + L+ K G C AP+ + + DTI L + Y+
Sbjct: 295 LTRFTNKSGQEIGRLPRETAEWVSTLIDQKICRFEGICVFAPDRVRVNDTIYLQLWCYLR 354
Query: 214 SSMF---------RKHHATSLKAGSNSAEDSVSLCH--PLPNLFRLLGITPFKKAEFTPS 262
F + +T+ SAE+ L LF +G+ P T +
Sbjct: 355 KEAFLPRNLWNMGDDNRSTAFFEEQESAEEKQLRLRQVALVKLFDEIGLQPT-----TVN 409
Query: 263 DLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGV-----G 317
D+ + + K+G A + + K N+ + E + + D + +
Sbjct: 410 DMTKKHK----KEGLLRAAEIAEQYDKTKREGKSNESSEDEESPELEEDQLDTLYKKAQS 465
Query: 318 YSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEK----GRCLDEAATTLHPCWEAY---- 369
+ + E +PP + LR YQ+QALHWM+ EK GR L ++HP WE Y
Sbjct: 466 FDFNMPEAQPPPSFVLNLRKYQRQALHWMLAKEKDKKSGREL-----SMHPLWEEYTWPT 520
Query: 370 RLLDERELVV-------YLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLT 422
+ +D+++L Y+N +SGE +++FP+ Q GGILAD MGLGKT+ ++L+
Sbjct: 521 KDVDDKDLPAVEGQAHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLI-- 578
Query: 423 HSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLI 482
HS R Q S ++ + + P S S ++ NT TL+
Sbjct: 579 HSHRNVSPSRQGPSSSTE---------------LVRMPSSSS--AILPAPNT-----TLV 616
Query: 483 ICPMTLLGQWNKLIQKPYEEG 503
+ P +LL QW K E+G
Sbjct: 617 VAPTSLLSQWESEAMKASEQG 637
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 30/279 (10%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 614 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSD 672
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ + ++ +G +L +YA +L LLLRLRQ C H +L+ +
Sbjct: 673 EERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTN-------- 724
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSR-AYVQEVVEELQKGEQGECPICLEAFEDAVLTP 670
SSN G D R ++++ L G EC ICL++ V+T
Sbjct: 725 ----------AVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITH 774
Query: 671 CAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITAP-----TGSRFQVDIEKNWVES 724
CAH C+ C+ + CP+CR I +L+ P S + D+E W S
Sbjct: 775 CAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDME--WTSS 832
Query: 725 TKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPL 761
+KI L+ L +L KS++ SQ+T FL L++IPL
Sbjct: 833 SKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN 382
EMEP ++ L P+QKQAL WMV E + L P WE L Y N
Sbjct: 228 HEMEPAEAIETPLLPHQKQALAWMVSRENSK-------ELPPFWEQRNDL-------YYN 273
Query: 383 AFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
+ + + P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 274 TITNFSEKDRPENVH---GGILADDMGLGKTLTAIAVILTNFHDG 315
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 57/332 (17%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + + P+ D + L +VQ IL+ +LRR K+ D++GR I+ LPP
Sbjct: 734 LRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPK 793
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+++ + + AE+ Y+ L +R+K +F + GR + NY SIL +L++LRQC DHP L
Sbjct: 794 TVEIKVLQFSRAERQIYKFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLL 853
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPS---------------RAYVQEVV 645
V+ + + +L ++ L+ + EG +D+ + +AY +V+
Sbjct: 854 VLGKS-----GEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVL 908
Query: 646 EELQKGEQGECPICL----EAFEDAVLTPCAHRLCRECL---LGSWKTPTS-GLCPVCRK 697
+EL GEQ + PIC E F D VL PC HR C++C+ +G+ + CP C K
Sbjct: 909 KEL--GEQEDTPICELCSNEMF-DEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGK 965
Query: 698 ---------TISRQDLITAPTGSRFQVDIEKN---------------WVESTKIAVLLKE 733
++ R+ P + + N V STK+ LL++
Sbjct: 966 GPIKLADLRSVQRRHKRVNPITDAYPGGRDPNSKSSNDTTVTLGKVDLVTSTKLRALLRQ 1025
Query: 734 LENLCLSG--SKSILFSQWTAFLDLLQIPLSR 763
LE + +K+++FSQ+T+FLDL++ L++
Sbjct: 1026 LEEIRQEDPKAKALVFSQFTSFLDLIEATLTK 1057
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 190/420 (45%), Gaps = 77/420 (18%)
Query: 144 ARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDT 203
A++ +I+RF + EIGR+ + L L+ +++ G P+ L T
Sbjct: 217 AKKVKATTDQIIRFRNERGFEIGRLSIHEAGFLTHLLDTGVIQLSGNVIDCPQNLTTGCT 276
Query: 204 IVLSIRVYINSSMF-------RKHHATSLKAGSNSA-EDSVSLCH-PLPNLFRLLGITPF 254
I+L+I+VY+ F R+ H + K +A E+++ L L +LF +G+ P
Sbjct: 277 ILLNIKVYLARKAFENFGKHKREEHFSFWKDQRETAMEEAMRLRKDSLRSLFERIGVKPI 336
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKS------------------------- 289
+ + S + + L+ + G L S L ++ S
Sbjct: 337 QSSAL--SKVTPIQGVLNRQKGPDLEGSRLRSSPSTSTAEEKGKGRAAMRAVDDDEEDSG 394
Query: 290 ----KVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHW 345
K+ ++N++D + + + ++EM+PPST LRPYQKQAL W
Sbjct: 395 DEAEKLDEKQMNEIDSIYRKAQQG---------DTRLDEMDPPSTFLYTLRPYQKQALTW 445
Query: 346 MVQLEKGRCLDEAATTLHPCWEAY------------RLLDEREL-----VVYLNAFSGEA 388
M EKG +LHP WE Y + D+ E Y N +SGE
Sbjct: 446 MNAREKGDS-SVRNESLHPLWEEYLFKKDQLPGEPIEISDDDEQPDSTRKFYWNPYSGEL 504
Query: 389 TIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDI 448
+++FP++ ++RGGILADAMG+GKT M +L+ T+ + ++S ++ G+EG
Sbjct: 505 SLKFPTSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTR---DGVEGE-- 559
Query: 449 SDQSPNLMKKEPKSLSIDKLIKQTNTL-----INGGTLIICPMTLLGQWNKLIQKPYEEG 503
D+ P + + K +++ + T TL++CP++L QW+ ++K ++G
Sbjct: 560 IDEEPASKRIKFKQVTLSNQWRAVPTAPKVESFPRATLVVCPVSLAAQWHDELRKMSQQG 619
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 164/332 (49%), Gaps = 57/332 (17%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + + P+ D + L +VQ IL+ +LRR K+ D++GR I+ LPP
Sbjct: 734 LRITPWGNYSFFRSFVTVPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPK 793
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFL 600
+++ + + AE+ Y+ L +R+K +F GR + NY SIL +L++LRQC DHP L
Sbjct: 794 TVEIKVLQFSRAERQIYKFLEERAKKRFIDLDADGRAMSNYTSILAMLMKLRQCVDHPLL 853
Query: 601 VMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPS---------------RAYVQEVV 645
V+ + + +L ++ L+ + EG +D+ + +AY +V+
Sbjct: 854 VLGKS-----GEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPEDVDKAYAAKVL 908
Query: 646 EELQKGEQGECPICL----EAFEDAVLTPCAHRLCRECL---LGSWKTPTS-GLCPVCRK 697
+EL GEQ + PIC E F D VL PC HR C++C+ +G+ + CP C K
Sbjct: 909 KEL--GEQEDTPICELCSNEMF-DEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGK 965
Query: 698 ---------TISRQDLITAPTGSRFQVDIEKN---------------WVESTKIAVLLKE 733
++ R+ P + + N V STK+ LL++
Sbjct: 966 GPIKLADLRSVQRRHKRVNPITDAYPGGRDPNLKSSNDTTVTLGKVDLVTSTKLRALLRQ 1025
Query: 734 LENLCLSG--SKSILFSQWTAFLDLLQIPLSR 763
LE + +K+++FSQ+T+FLDL++ L++
Sbjct: 1026 LEEIRQEDPKAKALVFSQFTSFLDLIEATLTK 1057
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 192/411 (46%), Gaps = 59/411 (14%)
Query: 144 ARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDT 203
A++ +I+RF + EIGR+ + L L+ +++ G P+ L T
Sbjct: 217 AKKVKATTDQIIRFRNERGFEIGRLSIHEAGFLAHLLDTGVIQLSGNVIDCPQNLTTGCT 276
Query: 204 IVLSIRVYINSSMF-------RKHHATSLKAGSNSA-EDSVSLCH-PLPNLFRLLGITPF 254
I+L+I+VY+ F R+ H + K +A E+++ L L +LF +G+ P
Sbjct: 277 ILLNIKVYLARKAFENFGKHKREEHFSFWKDQRETAMEEAMRLRKDSLRSLFERIGVKPI 336
Query: 255 KKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSK---------------VQSAKVNDV 299
+ + S + + L+ + G L S L ++ S V +
Sbjct: 337 QSSAL--SKVTPIQGVLNRQKGPDLEGSRLRSSPSTSTAEEKGKGRAAMPAVDDDGEDSG 394
Query: 300 DDVEPISDSDVDNIVGVGYSSE-----IEEMEPPSTLKCELRPYQKQALHWMVQLEKGRC 354
D+ E + + ++ I + ++ ++EM+PPST LRPYQKQAL WM EKG
Sbjct: 395 DEAEKLDEKQMNEIDSIYRKAQQGDTRLDEMDPPSTFLYTLRPYQKQALTWMNAREKGDS 454
Query: 355 LDEAATTLHPCWEAY------------RLLDEREL-----VVYLNAFSGEATIEFPSTLQ 397
+LHP WE Y + D+ E Y N +SGE +++FP++
Sbjct: 455 -SVRNESLHPLWEEYLFKKDQLPGEPIEISDDDEQPDSTRKFYWNPYSGELSLKFPTSQN 513
Query: 398 MARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMK 457
++RGGILADAMG+GKT M +L+ T+ + ++S ++ G+EG D+ P +
Sbjct: 514 LSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTR---DGVEGE--IDEEPASKR 568
Query: 458 KEPKSLSIDKLIKQTNTL-----INGGTLIICPMTLLGQWNKLIQKPYEEG 503
+ K +++ + T TL++CP++L QW+ ++K ++G
Sbjct: 569 IKFKQVTLSNQWRAVPTAPKVESFPRATLVVCPVSLAAQWHDELRKMSQQG 619
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 56/338 (16%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E + R + +VQ++L+P++LRRTKS EG P++ LP
Sbjct: 700 LRVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPK 759
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
+++ EL E E++ Y ++ R+K F+ V G +L +Y++I LLRLRQ C HP
Sbjct: 760 RTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPI 819
Query: 600 LVMSRG----------------DTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
L ++ D +D DL +L RF +S+A + PS +
Sbjct: 820 LTRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAH 879
Query: 644 VVEELQKGEQGECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTP----TSGLCPVCRKT 698
+ ++Q GECPIC E D +T C H C+ CL + C CR
Sbjct: 880 ALRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRAD 939
Query: 699 ISRQDLI---------TAPTGS------------------------RFQVDIEKNWVEST 725
++ QD+ T PT R + + S
Sbjct: 940 LNPQDIFEVVRYQSPNTTPTEQTPSSIGGDNVYSSSQPPPPPRISLRRINPLSPSAHTSA 999
Query: 726 KIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR 763
KI LL L + +G+KS++FSQ+T+FLDL+ L++
Sbjct: 1000 KIHALLAHLVRVP-AGTKSVVFSQFTSFLDLIGPQLTK 1036
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 165/365 (45%), Gaps = 66/365 (18%)
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
+ RF+ EIGR+P E + + L+ K E G C AP+ L + DTI L +R ++
Sbjct: 249 LTRFTNTAGQEIGRLPRETAEWVSTLLDQKICEFRGVCVFAPDRLRVNDTIYLQLRCFMR 308
Query: 214 SSMFR---------KHHATSLKAGSNSAEDSVSLCH--PLPNLFRLLGITPFKKAEFTPS 262
F+ + AT++ SAE+ L LF +G+ T
Sbjct: 309 IEAFQPKELPQKQDDNRATTIFEQEESAEEKQLRLRQVALVQLFDEIGL-----KSTTQD 363
Query: 263 DLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEP--ISDSDVDNIV--GVGY 318
D ++R K+G A + K+ + D D EP + +D + +
Sbjct: 364 DEIKKQR----KEGLLRAAEMADQEAKKLAKSGNTDSGDEEPAELEQDQLDALYKKAQSF 419
Query: 319 SSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY----RLLDE 374
+ E +PPS+ +LR YQKQAL+WM+ EK + + +HP WE Y + +D+
Sbjct: 420 DFSMPEAQPPSSFAMDLRKYQKQALYWMLSKEKDKKSGREVS-IHPLWEEYDWPLKDVDD 478
Query: 375 RELVV-------YLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
++L + Y+N +SGE +++FP+ Q GGILAD MGLGKT+ ++L+ HS R
Sbjct: 479 KDLPIIEGINHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLV--HSHR- 535
Query: 428 GLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMT 487
L QS NL + L + ++ T TL++ PM+
Sbjct: 536 NLPPTQSLG-----------------NLTR-----LPVSGVVPAPYT-----TLVVAPMS 568
Query: 488 LLGQW 492
LL QW
Sbjct: 569 LLAQW 573
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 139/277 (50%), Gaps = 26/277 (9%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W ++IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L+E
Sbjct: 608 WYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERKVFIQHITLSE 666
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L+
Sbjct: 667 EERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLT--------- 717
Query: 612 DLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPC 671
N ++ SS + + + ++++ L G EC ICL++ V+T C
Sbjct: 718 --NGMS------SSGPSRSDTPEELRKMLIEKMKIILSSGSDEECAICLDSLTFPVITHC 769
Query: 672 AHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITAPTGSRFQVDIEK----NWVESTK 726
AH C+ C+ + CP+CR I +L+ P D +K W S+K
Sbjct: 770 AHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPP-EELACDSDKESSMEWKSSSK 828
Query: 727 IAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
I L+ L L KS++ SQ+T FL L++ PL
Sbjct: 829 INALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPL 865
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNA 383
EMEP ++ L P+QKQAL WM+ E + L P WE L Y N
Sbjct: 229 EMEPAEAIETPLLPHQKQALAWMIARENSK-------ELPPFWEQRNDL-------YYNT 274
Query: 384 FSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
+ + E P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 275 ITNFSVKERPENVH---GGILADDMGLGKTLTAIAVILTNFDDG 315
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 146/284 (51%), Gaps = 32/284 (11%)
Query: 485 PMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQV 544
P ++ W LIQ+P +G+++GL +Q ++ I LRRTK + ++ LPP ++
Sbjct: 487 PFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKS------LIGLPPKTVET 540
Query: 545 IYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
Y EL+ E+ Y+ + +K + G ++ NY+++L ++LRLRQ CD
Sbjct: 541 CYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCD-------- 592
Query: 605 GDTQDYSDLNKLAKRFLKGSSNALEGED-KDVPSRAYVQEVVEELQKGEQGECPICLEAF 663
D S L L+ + + ED D P +Q++V LQ GE +CPIC+
Sbjct: 593 ----DMS----LCPPELRSFTTSTSVEDVTDKPE--LLQKLVAALQDGEDFDCPICISPP 642
Query: 664 EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVE 723
+ ++T CAH CR C+L + + + LCP+CR ++++ DL AP + + +
Sbjct: 643 TNIIITRCAHIFCRACILQTLQR-SKPLCPLCRGSLTQSDLYNAPPPPPDSSNTDGEDAK 701
Query: 724 STKIAVLLKELENLCLS------GSKSILFSQWTAFLDLLQIPL 761
S+ + + L +L ++ +KS++FSQ+ L LL+ PL
Sbjct: 702 SSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPL 745
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 27/173 (15%)
Query: 326 EPP-STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAF 384
EPP +K EL +QK+ L W++ EK + L P WE E++ +LN
Sbjct: 221 EPPREVIKSELFAHQKEGLGWLLHREK-------SGELPPFWE------EKD-GEFLNTL 266
Query: 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIE 444
+ + + P L RGG+ AD MGLGKT +T+ L+ + G S +P DG E
Sbjct: 267 TNYRSDKRPDPL---RGGVFADDMGLGKT-LTLLSLIAFDRYGNASTSTPTEEPLDG--E 320
Query: 445 GYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGG-----TLIICPMTLLGQW 492
G D ++ + S S+ + +T+ ++ TLI+CP +++ W
Sbjct: 321 G-DKIEKKGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAW 372
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 140/278 (50%), Gaps = 28/278 (10%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
W++ IQ+P GDE GL+ +QS++K I LRRTK+S + G+P+L LP + + + L++
Sbjct: 611 WHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIK-GKPVLELPERPVFIQHITLSD 669
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYS 611
E+ Y+++ K ++ +G +L +YA +L LLLRLRQ C H L+ +
Sbjct: 670 EERKIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTN-------- 721
Query: 612 DLNKLAKRFLKGSSNALEGEDK-DVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTP 670
SS+ G D + + ++++ L G EC ICL++ V+T
Sbjct: 722 ----------TVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITH 771
Query: 671 CAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITAPTGSRFQVDIEKN----WVEST 725
CAH C+ C+ + CP+CR I +L+ P D EK W S+
Sbjct: 772 CAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLLECPP-EELACDSEKKSNMEWTSSS 830
Query: 726 KIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPL 761
KI L+ L +L KS++ SQ+T FL L++ PL
Sbjct: 831 KINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPL 868
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLN 382
+EMEP ++ L P+QKQAL WMV E R L P WE L Y N
Sbjct: 228 QEMEPAEAVETPLLPHQKQALAWMVSRENSR-------ELPPFWELRNDL-------YYN 273
Query: 383 AFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
+ + + P + GGILAD MGLGKT+ IA++LT+ G
Sbjct: 274 TITNFSEKDQPENVH---GGILADDMGLGKTLTAIAVILTNFHDG 315
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 157/344 (45%), Gaps = 38/344 (11%)
Query: 450 DQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIIC---------------PMTLLGQWNK 494
D+ N+ +E K+ I N + GT I+ P W
Sbjct: 656 DEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQT 715
Query: 495 LIQKPYEEGDE-RGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAE 553
+ PY+ D + L +VQSIL+ ++LRRTK + DR G I+ LPP +++ Y + +++E
Sbjct: 716 FVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSE 775
Query: 554 KDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCDHPFLVMSRGDTQDYSD 612
+ Y++L+ ++K + + G + NY +IL LLLRLRQ CCD L +++ + D
Sbjct: 776 RKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSETFDD 835
Query: 613 LNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICL-EAFEDAVLTPC 671
++F N K +PS + ++ + ECPIC E ++ +L C
Sbjct: 836 FEFSVEQF-NSLINQFVVTGKPIPSDILKIDTLKSFE-ALITECPICCNEPIQNPLLLNC 893
Query: 672 AHRLCRECL-----LGSWKTPTSGLCPVCRKTISRQDLI------TAPTGSRFQVDIEKN 720
H C +CL + LC CR+ + QD+ T S V E
Sbjct: 894 KHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGEEVK 953
Query: 721 W-----VESTKIAVLLKELENLCLSG--SKSILFSQWTAFLDLL 757
W ++S K+ LL +L L S K ++FSQ+T FLD++
Sbjct: 954 WKYWNRLQSVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDII 997
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 175/421 (41%), Gaps = 64/421 (15%)
Query: 97 FVGWGDVPAMSTSKG-RKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIV 155
++G V A ST+ G R L+ G+ + S S S KS + + + S IV
Sbjct: 205 YIGCFGVEAYSTASGTRTLQAGERIYLERQKLSIKSQSRNSRKKSKLLSINSSC-YSNIV 263
Query: 156 RFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSS 215
RF D EIG++P E + + L+ C + ++ + L + +IN +
Sbjct: 264 RFCNSDHHEIGKLPTEVASVISTLMEQGFWSFEAICIYSDNIIRFGSNVTLQVYCFINVN 323
Query: 216 MFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLDSKD 275
+ + A ++ E+ L R + F P DL ++K+
Sbjct: 324 HPSLNRSPFTLATNSMQEEEEHLKASFAQNKRDHLLRLFTWIALEP-DL----EDCNTKE 378
Query: 276 GCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIV----GVGYS------SEIEEM 325
+ L S + A+ D+ P S D +++V + Y +E+
Sbjct: 379 SIHIDDIL---KTSSLPEARDESNSDLTPSSTEDEEDVVSDQLAILYDKVKTSGAELPSA 435
Query: 326 EPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRL-------------L 372
PST +LR YQKQAL+WM E+G D +A LHP W +R
Sbjct: 436 PKPSTFALDLREYQKQALYWMCCKEEGVQSDGSAPKLHPLWSRFRFPKDSEFPEFFKCSS 495
Query: 373 DERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGI 432
D+ Y+N ++GE T+ FP+++ RGGILAD MGLGKT+ ++L+ HS R S
Sbjct: 496 DDDNTHFYVNLYTGETTMLFPNSMPYHRGGILADEMGLGKTIEVLSLI--HS-RPCFS-- 550
Query: 433 QSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
+D+ P + SL + + TL++ PM+LL QW
Sbjct: 551 ----------------TDEIPEAFRHSKPSLPV----------ASRTTLVVAPMSLLDQW 584
Query: 493 N 493
+
Sbjct: 585 H 585
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 158/362 (43%), Gaps = 90/362 (24%)
Query: 492 WNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTE 551
+N + KP++ + L +VQ IL+ ++LRR K D++G+PI+ LPP + V E +E
Sbjct: 888 FNSFVCKPFQAKSTKALDVVQVILESVLLRREKKMKDKDGKPIVELPPKTIVVKELEFSE 947
Query: 552 AEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM-------SR 604
E+ Y+ +++R+ ++F G + N + I +L+RLRQ HP LV+ S
Sbjct: 948 LERRIYDNVYRRAYLQFASLKANGTVTRNLSVIFSVLMRLRQAVCHPSLVLKAGSKVQSG 1007
Query: 605 GDTQDYSDLNKLA----KRFLKGSSNALE-GEDKD------VPSRAYVQEVVEELQKGEQ 653
G +D+ D N ++ ++A+E G D D PS ++E+V + Q E
Sbjct: 1008 GIRKDHVDRNGEVGVGEGDHVEVDADAVEFGLDSDHVGGNGTPSTQDLRELVAQFQLDEA 1067
Query: 654 G--------------------------------------ECPICLEAFEDA--VLTPCAH 673
G ECPICLE + + L C H
Sbjct: 1068 GEAGDDSTESYTKATVERLIGEMHGDQATVPPVVSDGENECPICLEESQISPCYLPRCMH 1127
Query: 674 RLCRECL---LGSWKTP-TSGLCPVCRKT-ISRQDLIT---------APTGSRFQVD--- 716
C+ CL LG K G CP CRK + DLI A +G D
Sbjct: 1128 SACKACLVDYLGQCKQKGDQGACPTCRKGPVQETDLIEAIRTRPATRAASGGASPTDRPG 1187
Query: 717 -------------IEKNWVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPL 761
+ N STK++ L+ L L + + K ++FSQ+T+FLDL++ L
Sbjct: 1188 KACTLTSVPSVIYVRNNLRTSTKLSALISHLNTLRATEAAFKGVIFSQFTSFLDLIEPVL 1247
Query: 762 SR 763
+R
Sbjct: 1248 TR 1249
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 51/217 (23%)
Query: 320 SEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRC-----------------LDEAATTL 362
+ + E+EPP + LRPYQKQAL WM +E E +L
Sbjct: 542 AHLPEVEPPESFVLTLRPYQKQALGWMKNMEMAPGQSSSSQEQSVTQQGNGDTGERNVSL 601
Query: 363 HPCWEAY-------------RLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409
HP WE Y RL+ + Y N ++G+ +++F + +RGGILAD MG
Sbjct: 602 HPLWEEYEFPLDYDNPQANERLILSATRLFYFNPYTGDLSLDFQRASKGSRGGILADEMG 661
Query: 410 LGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKK--------EPK 461
LGKT+M +LL H+ R G + S+G I D ++ + +K
Sbjct: 662 LGKTIMVASLL--HANRTSDPG-----EESEGEINAVDAAEGDVSTKRKGSAKQTSLASA 714
Query: 462 SLSIDKLIKQTNTLING------GTLIICPMTLLGQW 492
+ + Q L+ +L++ PM+L+GQW
Sbjct: 715 FAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQW 751
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 133 SSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCK 192
+S P+ F +++ IVRFS E+GR+P E + + L+ E G
Sbjct: 290 ASAGPTNFFTSKQKSKEKEHFIVRFSNMRGFEVGRLPLEVAIWMSKLIDAGIAEFEGVVV 349
Query: 193 SAPEVLGIMDTIVLSIRVYINSSMF 217
P L + I+L ++ YI F
Sbjct: 350 DCPPSLTVGCDIILQVKAYIKFDAF 374
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 154/307 (50%), Gaps = 36/307 (11%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + + W + + P+E+G+ + ++ ++L+P++LRRTK+ D +G+P++ LPP ++
Sbjct: 677 PWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVI 736
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
V +L+ +EK Y+++ + ++ + + +G +L NY +IL +LRLRQ C H L+
Sbjct: 737 VEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLKK 796
Query: 604 RGD------------TQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAY--VQEVVEELQ 649
D TQ+ S + L + +K +++ + D S + + E+L
Sbjct: 797 TPDLGDPDLEDLENSTQNISSI--LMPKNIKSPKSSISQDKLDALSANFRDIHSASEQLP 854
Query: 650 KGEQGECPI-CLEAFEDAVLTPCAHRLCRECLLG----SWKTPTSGLCPVCRKTISRQDL 704
E C C+E +T C H C CL S CP CR IS ++
Sbjct: 855 SFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEANV 914
Query: 705 ITAPTGSRFQVDIEKNW--------VESTKIAVLLKELENLCLS--GSKSILFSQWTAFL 754
+ + +D E+ + +STKI LL+ L+ + + G + I+FSQ+++FL
Sbjct: 915 LKL----KEPIDAERGYELISFHSHFQSTKIKALLRHLKQIQETSPGEQIIVFSQFSSFL 970
Query: 755 DLLQIPL 761
D+L+I L
Sbjct: 971 DILEIEL 977
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 160/386 (41%), Gaps = 66/386 (17%)
Query: 151 CSEIVRF-STKDAGEIGRIPHEWSRCLLPLVRDKKVEILG--CCKSAPEVLGIMDTIVLS 207
CS +VR T E+GR+P + +R L PL+ + L + + + D I +
Sbjct: 223 CSHLVRLIDTSQDRELGRMPEDVARILYPLLDYSEQVSLEPYLLINNGKRFSVGDNIYIR 282
Query: 208 IRVYINSSMFRKHHATSLKAGS---NSAEDSVSL--CHPLPNLFRLLGITPF---KKAEF 259
I Y+ S F + S+ S + D+ L + LF + I P K E
Sbjct: 283 IDCYLTSQAFVRIEGGSILNKSFINDHGMDTRQLHRAGAIMALFDAINIQPVYGDTKNEM 342
Query: 260 TPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVGVGYS 319
P+ + + +++ + ++ +N + I+ S
Sbjct: 343 IPN----------------YQENTVSSSQFQDEALNINQLKSFYRITQS-------AASL 379
Query: 320 SEIEEMEPPSTL-KCELRPYQKQALHWMV--QLEKGRCLDEAA------TTLHPCWEAYR 370
+ E P +L K +LR YQKQ+L WM+ + E ++AA +++P W+ +R
Sbjct: 380 QNLPETTPDESLFKLQLRRYQKQSLSWMLKREYEYSHLSEKAAEVSIDGNSMNPLWKKFR 439
Query: 371 L---------LDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLL 421
E + Y N ++GE +IE P + GGILAD MGLGKT+ +AL+
Sbjct: 440 WPSNSKQGTPNHEDDCFFYANLYTGEFSIEKPVIKTIINGGILADEMGLGKTISALALIC 499
Query: 422 THS-QRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGT 480
T S I+S +PS + D SP L + K +T T
Sbjct: 500 TASYDEAHEKKIESTKKPSMKEMSSQ--VDSSP-LRHSQHKH----------DTYAYRTT 546
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDER 506
LI+ PM+LL QW +K ++ +R
Sbjct: 547 LIVVPMSLLNQWQSEFEKANKDLKKR 572
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 148/322 (45%), Gaps = 45/322 (13%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P W I P+E + R L +VQ++L+P+++RRTK +G+ ++ LPP
Sbjct: 775 LRVEPWNNFSFWRTFITVPFESKNFVRALDVVQTVLEPLVMRRTKDMKTPDGQFLVPLPP 834
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++++ EL+E E+ Y+ +F R+K ++ G ++ + SI +LRLRQ C HP
Sbjct: 835 KHIEIVDIELSEPERAVYDYVFNRAKRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPV 894
Query: 600 LVMSR----------------GDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQE 643
LV ++ D DL L +RF + +A + + +
Sbjct: 895 LVRNQEILADEEEANMAADVAAGLADDMDLQTLIERFTATTDDASKTNNN------FGAH 948
Query: 644 VVEELQKGEQGECPICL-EAFEDAVLTPCAHRLCRECLLGSWKTPTS----GLCPVCRKT 698
V+ +++ ECPIC E D +T C H C++CLL K T C CR+
Sbjct: 949 VLRQIRDEAVNECPICAEEPMIDQAVTGCWHSACKKCLLDYIKHQTDRNEVPRCFQCREH 1008
Query: 699 ISRQDLI-----------TAPTGSRFQVDIEKNWV----ESTKIAVLLKELENLCLSGS- 742
I+ +D+ ++ G+ + I V S KI L+ L L
Sbjct: 1009 INIRDIFEVIRHDDDLETSSTPGASPEPRISLQRVGANDSSAKIVALISHLRTLRQEHPK 1068
Query: 743 -KSILFSQWTAFLDLLQIPLSR 763
KS++ SQ+T+FL L+ L+R
Sbjct: 1069 MKSLVISQFTSFLSLISSALTR 1090
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 58/381 (15%)
Query: 154 IVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYIN 213
IVRF+ E+GR+ + + + L+ G C APE L +T+ L ++ Y+
Sbjct: 306 IVRFNDASGRELGRLAKDTANWVSTLIDQNICRFEGICVYAPERLRTNETVFLQLKCYML 365
Query: 214 SSMFRKHH---ATSLKAGSNSAEDSVSLCH------PLPNLFRLLGITPFK--------- 255
S F A + AG + +++ L LF+ + I P +
Sbjct: 366 RSAFLGRTLQLADNRAAGFHEKDETTEEKDLRLRQVALVRLFQEINIVPSRGNAAAAKDA 425
Query: 256 KAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISDSDVDNIVG 315
+ + + K+ +D + + L + + + + + D ++ +
Sbjct: 426 RKDLLEAADSAEKKAMDKAKAGDHNTNGLASPPEEAEEGQELEQDQLDALYKK------A 479
Query: 316 VGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAY----RL 371
+ E EP +T LRPYQKQ+L+WM+ EK + ++ T++HP WE Y +
Sbjct: 480 QSFDFSTPEAEPANTFAMTLRPYQKQSLYWMLAKEKNQRTEDRETSMHPLWEEYVWPTKD 539
Query: 372 LDERELVV-------YLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHS 424
D+++L V Y+N +SG+ +++FP Q GGILAD MGLGKT+ ++L+ HS
Sbjct: 540 HDDKDLPVVPDQPCFYVNPYSGDLSLDFPKQEQHCLGGILADEMGLGKTIQMLSLI--HS 597
Query: 425 QRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLING--GTLI 482
R S+ I+ + S N + + P + T I+ TL+
Sbjct: 598 HR------------SEVAIKAREAGPTSVNNLPRLPT-------VSGQKTTIDAPCTTLV 638
Query: 483 ICPMTLLGQWNKLIQKPYEEG 503
+ PM+LL QW + +EG
Sbjct: 639 VAPMSLLAQWQSEAENASKEG 659
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 154/315 (48%), Gaps = 41/315 (13%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P + W + P+E + ++ +V +IL+P++LRRTK D++G+P++ LPP
Sbjct: 727 LELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPP 786
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++ + ++++ Y+ L +++V + +G +L Y++IL +LRLRQ C HP
Sbjct: 787 KEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPG 846
Query: 600 LVMSRGDT-QDYSDLNKL---------------AKRFLKGSSNALEGEDKDVPSRAYVQE 643
L+ S+ + +D S NKL ++RF N+ E+ D A +Q
Sbjct: 847 LIGSQDENDEDLSKNNKLVTEQTVELDSLMRVVSERF----DNSFSKEELD----AMIQR 898
Query: 644 V---VEELQKGEQGECPICLEA---FEDAVLTPCAHRLCRECLLGSWKTPTS---GL-CP 693
+ + + + EC IC + A+ T C H C +CL + S GL CP
Sbjct: 899 LKVKYPDNKSFQSLECSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCP 958
Query: 694 VCRKTISRQDLI----TAPTGSRFQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILF 747
CR I L+ T + +S+KI LLKEL+ L +G + ++F
Sbjct: 959 NCRNQIDACRLLALVQTNSNSKNLEFKPYSPASKSSKITALLKELQLLQDSSAGEQVVIF 1018
Query: 748 SQWTAFLDLLQIPLS 762
SQ++ +LD+L+ L+
Sbjct: 1019 SQFSTYLDILEKELT 1033
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/417 (23%), Positives = 163/417 (39%), Gaps = 88/417 (21%)
Query: 143 RARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEI---LGCCKSAPEVLG 199
R R+ S + F + EIGR+ + ++ L PL+ ++ L C + + L
Sbjct: 217 RGRKKASMASLVRIFDIQYDREIGRVSEDIAQILYPLLSSHEISFEVTLIFCDN--KRLS 274
Query: 200 IMDTIVLSIRVYINSSMFR-KHHATSL------KAGSNSAEDSVSLCHPLP--------- 243
I D+ +L + ++ S +F ++ SL + G+ +D+ + L
Sbjct: 275 IGDSFILQLDCFLTSLIFEERNDGESLMKRRRTEGGNKREKDNGNFGRTLTETDEELESR 334
Query: 244 -------NLFRLLGITPF--KKAEFTPSDLYTRKRP----LDSKDGCGLHASLLHANKSK 290
LF L + P ++ + P LD+ + C + +H N
Sbjct: 335 SKRLALLKLFDKLRLKPILDEQKALEKHKIELNSDPEIIDLDNDEICSNQVTEVHNNLRD 394
Query: 291 VQSAKVNDVDDVEPISDSDVDNIVGVGYSSE----IEEMEPP-STLKCELRPYQKQALHW 345
Q + E ++ + + SSE + E EP K ELR YQKQ L W
Sbjct: 395 TQHEE-------ETMNLNQLKTFYKAAQSSESLKSLPETEPSRDVFKLELRNYQKQGLTW 447
Query: 346 MVQLEK--------GRCLDEAATTLHPCWEAYRLLD----------------ERELVVYL 381
M++ E+ G + A ++P W+ ++ + E + Y
Sbjct: 448 MLRREQEFAKAASDGEASETGANMINPLWKQFKWPNDMSWAAQNLQQDHVNVEDGIFFYA 507
Query: 382 NAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDG 441
N SGE ++ P M +GGIL+D MGLGKTV +L+L+ + +
Sbjct: 508 NLHSGEFSLAKPILKTMIKGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFD----- 562
Query: 442 GIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
IE +SD P+ + K + + TLI+ PM+LL QW+ K
Sbjct: 563 -IENTAVSDNLPSTWQDNKKPYA------------SKTTLIVVPMSLLTQWSNEFTK 606
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1
Length = 1151
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 156/310 (50%), Gaps = 31/310 (10%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
L + P + +G W + I P+EE + ++ +V +I++P++LRRTK D +G P++ LPP
Sbjct: 708 LKLEPWSQIGYWKQFITNPFEERNFKQAFDVVNAIMEPVLLRRTKQMKDTDGNPLVQLPP 767
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ-CCDHP 598
++ + +L++ +K YE +R++ F ++ G +L Y++IL +LRLRQ CCD
Sbjct: 768 KEIVIEKLQLSKKQKLIYEEFLQRAEKTFRSGLQSGDLLKKYSTILVHILRLRQVCCDSN 827
Query: 599 FL-VMSRGDTQDYSDLNKLAKRF--LKGSSNALEGEDKDVPS------RAYVQEVVEELQ 649
+ + D S NKL +K E E+ +VP ++ V +
Sbjct: 828 LIGTLDENDEDLSSGNNKLITESVDVKTLIPDTEEEEDEVPPFENDELDKLIESVEAKFI 887
Query: 650 KGEQ---GECPICL-EAFE--DAVLTPCAHRLCRECL--LGSWKTPTS--GLCPVCRKTI 699
Q EC IC E E AV+T C H C+ECL G+++ S CP CR+ I
Sbjct: 888 DSNQLIPVECSICTAEPIESSSAVVTECEHVFCKECLEEYGNFQKEKSLQQKCPNCRRDI 947
Query: 700 SRQDLITAPTGSR-----FQVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTA 752
+ + GS D ++ K+ L++ L+ L S G + ++FSQ+++
Sbjct: 948 NLNRCLAFEKGSDGILKLIHFDRKE---RPAKLNALIRHLQQLQDSSAGEQVVVFSQFSS 1004
Query: 753 FLDLLQIPLS 762
+LD+L+ L+
Sbjct: 1005 YLDILESQLN 1014
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 158/399 (39%), Gaps = 102/399 (25%)
Query: 157 FSTKDAGEIGRIPHEWSRCLLPLVRDKKVEI-LGCCKSAPEVLGIMDTIVLSIRVYINSS 215
+S D EIGR+P + +R + PL+ +V L + L I D I++ + ++ S+
Sbjct: 222 YSANDEREIGRVPEDIARIVFPLLHRNEVHFKLTMIYPGDKRLSIGDNIIIQMDSFLTST 281
Query: 216 MF-RKHHATSLKAGSNSAEDSVSLCHPLPNL----FRLLGITPFKKAEFTPSDLYTRKRP 270
+F RK + T N E ++ L R+ I F K + P
Sbjct: 282 LFNRKENPTFSTQNGNGRERFGAIVETEQELEERNIRMGLIMLFDKIKLRPV-------- 333
Query: 271 LDSKDGCGLHASLLHANKSKVQSAKVNDVDD---------VEPISDS-------DVDNIV 314
KD A L K ++ D++D EP++D D NI
Sbjct: 334 ---KD----EAKFLEKLKQDGDDNEIVDLEDDESFGNFLSQEPLNDELPTQHQEDTMNIN 386
Query: 315 GVG-----------YSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCL-------- 355
+ +S I PP +K ELR YQKQ L WM++ E G +
Sbjct: 387 QLTSFYKATQSSKQLNSLIPTTPPPELVKVELRKYQKQGLTWMLRRE-GISIGHDNEDKS 445
Query: 356 DEAATTLHPCWEAYRL-----------------LDERELVVYLNAFSGEATIEFPSTLQM 398
++ T L+P W ++ + + + Y N +GE ++E P+
Sbjct: 446 EDDTTLLNPLWRQFQWPRNMSWHNQSTGSENDNSNPKLIFFYGNLHTGEFSLERPTMNSF 505
Query: 399 ARGGILADAMGLGKTVMTIALLLT-----HSQRGGLSGIQSASQPSDGGIEGYDISDQSP 453
GGIL+D MGLGKT+ ++L+L H+ L +S++ SD IE
Sbjct: 506 KNGGILSDEMGLGKTISALSLVLMRPKDEHTTSQSLFHQESSNLSSDDVIE--------- 556
Query: 454 NLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
KEP+ + TLII PM+LL QW
Sbjct: 557 ---IKEPE-----------RSYAYKTTLIIVPMSLLTQW 581
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 150/306 (49%), Gaps = 37/306 (12%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P W + P+E+ + L +V+SIL+PI LRRTKS + G+P++ LP ++
Sbjct: 644 PWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQK-KNGKPLVELPAKEVV 702
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ + + E+ Y+ R+ F + ++ G++L Y IL +LRLRQ C H L+
Sbjct: 703 IEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCHVDLIGG 762
Query: 604 RGDTQD---YSDLNKLAKRFLKG-SSNALE-GEDKDVPSRAYVQEVVEELQKGEQGECPI 658
+ D ++ ++ ++FL N + D DV + Y + +++ E+ EC I
Sbjct: 763 AHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMY--NLYGKIK--EENECSI 818
Query: 659 CLEA---FEDAVLTPCAHRLCRECLLGSW----KTPTSGLCPVCRKTISRQDLI---TAP 708
C + + + V+TPCAH C C+L + LCP CR IS+ L P
Sbjct: 819 CTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKLCPNCRSPISKYQLFRIRNQP 878
Query: 709 T-GSRFQVDIEKNWVE-------------STKIAVLLKELENLCLS--GSKSILFSQWTA 752
T G+ + +K+ + S+KI L++ L+ L SK I+FSQ+++
Sbjct: 879 TKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSS 938
Query: 753 FLDLLQ 758
+LD++Q
Sbjct: 939 YLDIIQ 944
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 154/408 (37%), Gaps = 116/408 (28%)
Query: 142 VRARQAVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVRDKKVEIL--GCCKSAPEVLG 199
+ + + + S IVR + EIGRIP +W+R L PL D + + + L
Sbjct: 175 ITTKNSTMANSAIVRV-YHNEREIGRIPEDWTRILSPLF-DLNIAVFEASVLEETKSRLS 232
Query: 200 IMDTIVLSIRVYINSSMFRKH-----HATSLKAG----SNSAEDSVSL---CHPLPNLFR 247
D+ V+ I VY+ +S F K+ + LK S +E +L + NLF
Sbjct: 233 TGDSFVIEIEVYLTNSSFAKNLDATENPIDLKKSNFDYSKESESEAALRLRQFAISNLFD 292
Query: 248 LLGITPFKKAEFTPSDLYTRKRPLDSKDGCGLHASLLHANKSKVQSAKVNDVDDVEPISD 307
L I P K + D++D + + S ++N D P+ +
Sbjct: 293 RLAIKPLKVND-------------DTED------------EEDISSQEINSGDVEHPVPE 327
Query: 308 SDVDNIVGVGYSSEI--------EEMEPPS-TLKCELRPYQKQALHWMVQLEK------- 351
++D + S+ E PP +LR YQK L WM+ EK
Sbjct: 328 INLDQMKEFYQSNNQLKILEGLPETTTPPKENFALDLRSYQKHGLSWMLAREKELDVLEM 387
Query: 352 ----------GRCLDEAATTLHPCWEAYR-----------LLDERELVVYLNAFSGEATI 390
R E T++P W Y+ ++ E Y N ++GE ++
Sbjct: 388 LSNEDKLSSQSRKELENLGTMNPLWRKYKWPYATEATQDPTQNQTEKYFYANMYNGELSL 447
Query: 391 EFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISD 450
E P RGGILAD MGLGKT+ T+AL+ S P D
Sbjct: 448 EKPVIKSSLRGGILADEMGLGKTIATLALV--------------NSVPYDNF-------- 485
Query: 451 QSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
EPKS + TLI+ PM+LL QW +K
Sbjct: 486 -------PEPKS---------DRPYASQTTLIVVPMSLLFQWKSEFEK 517
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 14/284 (4%)
Query: 492 WNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELT 550
W I P++EG L VQ IL+PI+LRRTK+ +G P++VLP + + LT
Sbjct: 615 WRNFITLPFQEGKIVSALMTVQCILEPIVLRRTKNMKQADGSPLVVLPKKTINIEKVALT 674
Query: 551 EAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDY 610
+ E+ Y + R++ + + NY +IL +LRLRQ C P L++ R + +
Sbjct: 675 DQERVIYSYVLARAQTSLQKSEASEAVGRNYLNILTQILRLRQSCCDPALIL-RPEAEVP 733
Query: 611 SDLNKLAKRFLKGSSNALEGEDKDVPSRA--YVQEVVEELQ-KGEQGECPICLEAFEDAV 667
+D + + ++ + D + A Y E++ +LQ + ECPIC E
Sbjct: 734 TDEQLQIEENESQLKSMIQQYNDDTQTSACEYSSEIIAQLQDQSAPPECPICAEDVTKLA 793
Query: 668 LTPCAHRLCRECLLGSWKTPTSG----LCPVCRKTISRQDLITAPTGSRFQVDIE----K 719
++ C H C +CL + + S +C +CR+ + +D+ DI
Sbjct: 794 ISKCLHMGCVDCLADNVRFQESKKQTPVCCICRQPAALKDIFEVERTGEDCKDIRLKKLS 853
Query: 720 NWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLSR 763
+ S+K+ L+ +L+ L +KS++FSQ+T++LD++Q L R
Sbjct: 854 DRPRSSKLVALVSKLKQLP-KDAKSVVFSQFTSYLDIIQTELRR 896
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 120/279 (43%), Gaps = 24/279 (8%)
Query: 162 AGEI-GRIPHEWSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFRKH 220
+GE+ GRI E + L+ + + C A L + V+ ++ Y+ F+
Sbjct: 194 SGELLGRISGEHDYSIASLIDSRVCDFEASCVYADHNLSLGSNFVVELKCYLTEEAFQDV 253
Query: 221 HATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPL-DSKDGCGL 279
L + + + V ++ ++L + + DL+ + + +++ +
Sbjct: 254 AMPLLDSKTAKKREYVFDNSRESHVEKML-----RNRQIAIVDLFGKLNLIKENEANADM 308
Query: 280 HASLLHANKSKVQSAKV--NDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPST----LKC 333
+L A S N D+ EPI ++D + E E++E P T
Sbjct: 309 VKDMLRAKSQPPSSQPPSQNSEDESEPIPTDELDALYK---RIEKEDVEQPETEVEGFPL 365
Query: 334 ELRPYQKQALHWMV--QLEKGRCLD-EAATTLHPCWEAYRL--LDERELVVYLNAFSGEA 388
ELR YQKQ L WM+ + E D + + ++P W DE+ Y+N SG
Sbjct: 366 ELRRYQKQGLTWMISRETEVSEYFDNDDSGPINPLWTKVDFPGSDEK---FYVNFSSGAL 422
Query: 389 TIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG 427
T++FP + GGILAD MGLGKT+ T+A++ G
Sbjct: 423 TLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDRHVG 461
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 23/295 (7%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + W + + P+E+ D L+++Q+++ PI+LRRTK+ D +G P++ LPP ++
Sbjct: 653 PWCKIDYWRQFVSDPFEKKDYSSALEVIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVV 712
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ ++ E Y+ +++ + + +G +L Y++IL +LRLRQ C H F ++
Sbjct: 713 IEMIRFSDTEAGLYKYFLSKAEHSVKESLARGDLLKKYSTILLHILRLRQVCCH-FKLLG 771
Query: 604 RGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVP--SRAYVQEVVEELQKG-------EQG 654
D D DL + + L GED P S + + +E+ + +
Sbjct: 772 SQDEND-EDLKNMKLINDIPDISTLLGEDSQSPGSSSEGMPDFIEDFKTKYPNSDALKDL 830
Query: 655 ECPIC----LEAFEDAVLTPCAHRLCRECLLG----SWKTPTSGLCPVCRKTI-SRQDLI 705
EC IC + V T C H C CLL K + +CP CR + SR L
Sbjct: 831 ECSICTCEAISPLTSVVFTRCGHPFCESCLLEYIQFQNKKGSETICPNCRAAVESRYLLK 890
Query: 706 TAPTGSRFQVDIEKNWVESTKIAVLLKELENL--CLSGSKSILFSQWTAFLDLLQ 758
+ + N +S+KI L++ L++L + + ++FSQ++++LD+L+
Sbjct: 891 LEDINGKLEPVPYSNTKKSSKIVALIRHLKHLQDTSANEQVVVFSQFSSYLDILE 945
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 178/467 (38%), Gaps = 106/467 (22%)
Query: 70 NEIRASSENGTLAEAIAEGYSEGSEWW-FVGWGDVPAMSTS-KGRKLRRGDEVTFTFPLK 127
N+I+ +SE G I + + W F+G V AM+T + L+ G E+
Sbjct: 122 NQIKRASEGGL---PILKRKKQLCCWRRFLGSTQVNAMATRPTAQPLKYGSELLI----- 173
Query: 128 SFNSLSSKFPSKSFVRARQAVVPCSEIVRF-STKDAGEIGRIPHEWSRCLLPLVRDKKVE 186
+S P+ S +R+R+ S+ VRF + E+GR+P + S L L++ VE
Sbjct: 174 ---RRTSGQPNNSGLRSRKKP-GFSQYVRFCDATSSRELGRLPEDISEILHTLLQTPGVE 229
Query: 187 ILGC---CKSAPEVLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLP 243
C S + L + D V+ + ++ S +F G E L
Sbjct: 230 FKATMIFCNS--KRLSVGDLFVVRLDCFVTSLLF-----DPALPGKAEDEQFQQRNRALM 282
Query: 244 NLFRLLGITPFKK-AEFTPS--DLY-----------TRKRPLDSKDGCGLHASLLHANKS 289
LF+ L +TP + A+ P + Y T P S D L+ L + +S
Sbjct: 283 LLFKNLNMTPLAEGADLVPEKPEFYDLEEDESITDATVNSPTASDDYMDLN-QLRNFYRS 341
Query: 290 KVQSAKVNDVDDVEPISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQL 349
+SA + + + P P + ELR YQKQ L WM+
Sbjct: 342 TQESASIFKLRETTP----------------------PVDKFQLELRRYQKQGLTWMLLR 379
Query: 350 EKGRCLDEAATT-------LHPCWEAYRLLDERELVV-----------------YLNAFS 385
E+ + E + + P W ++ + V Y N +
Sbjct: 380 EREHAILEPGSQDALADGPMDPMWRMFKWPRDTSWDVSRGTTYVSLEADIPDKFYANLHT 439
Query: 386 GEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEG 445
GE ++ P + + +GGILAD MGLGKT+ +AL+ PSD
Sbjct: 440 GEFSLVKPISKSILKGGILADEMGLGKTISILALI--------------TMVPSDTKHLL 485
Query: 446 YDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
++ P LS++ I TLI+ PM+LL QW
Sbjct: 486 TTAQEKPP------VGHLSLELGISTVKPYTASTTLIVVPMSLLPQW 526
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 137/300 (45%), Gaps = 64/300 (21%)
Query: 485 PMTLLGQWNKLIQKP-----YEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539
PM+ +N + KP YE + K V S+LK IMLRRTK E L LPP
Sbjct: 474 PMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTK----LERADDLGLPP 529
Query: 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPF 599
++V E E+D Y++L+ SK KF+ ++ +G +L+NYA+I +L+ R+RQ DHP
Sbjct: 530 RVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPD 589
Query: 600 LVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPIC 659
LV++ +KR K V +++ E C IC
Sbjct: 590 LVLA-------------SKR-------------KTV-----------DIENQENIVCKIC 612
Query: 660 LEAFEDAVLTPCAHRLCRECLLGSWKTPTSGL---CPVCRKTISRQDLITAPTGSRFQVD 716
E +DA+ + C H CR C+ G CP C +S ++AP F +
Sbjct: 613 DEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSID--LSAPALEDFSEE 670
Query: 717 IEKN-----------WVESTKIAVLLKELENLCLSGS--KSILFSQWTAFLDLLQIPLSR 763
KN W STKI L++EL L KSI+FSQ+T+ LDL+ L +
Sbjct: 671 KFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRK 730
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 45/102 (44%)
Query: 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVY 380
E++++E P L L P+Q++ ++W+ + E
Sbjct: 241 EVKQIEQPKELVLNLLPFQREGVYWLKRQEDS---------------------------- 272
Query: 381 LNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLT 422
+F G GILAD MG+GKT+ TIALLL+
Sbjct: 273 --SFGG---------------GILADEMGMGKTIQTIALLLS 297
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 129/268 (48%), Gaps = 57/268 (21%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+Q++LK IMLRRTK E L LPP + V E EKD Y +L+ SK K++
Sbjct: 434 IQTLLKNIMLRRTKV----ERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNS 489
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEG 630
FVE+G +L+NYA+I L+ R+RQ DHP LV+ R N G
Sbjct: 490 FVEEGVVLNNYANIFTLITRMRQLADHPDLVLKR--------------------LNNFPG 529
Query: 631 EDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECL---LGSWKTP 687
+D V V+ C +C + E+ + + C H+ CR C+ + S+
Sbjct: 530 DDIGV--------VI----------CQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMEN 571
Query: 688 TSGL-CPVCRKTIS--------RQDLITAPTGSRF-QVDIEKNWVESTKIAVLLKELENL 737
+ L CPVC +S DL + S ++++ W STKI L++EL L
Sbjct: 572 NNKLTCPVCHIGLSIDLSQPALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKL 631
Query: 738 CLSGS--KSILFSQWTAFLDLLQIPLSR 763
+ KSI+FSQ+T+ LDL++ L R
Sbjct: 632 RSNKRTIKSIVFSQFTSMLDLVEWRLKR 659
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 401 GGILADAMGLGKTVMTIALLLT 422
GG+LAD MG+GKT+ TIALL+
Sbjct: 205 GGVLADEMGMGKTIQTIALLMN 226
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 145/325 (44%), Gaps = 49/325 (15%)
Query: 485 PMTLLGQWNKLIQKPYEEGD-ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543
P + W + P+E+ + L +V+SIL+PI +RRTK+ G+P++ LPP ++
Sbjct: 728 PWSNFSYWKTFVTLPFEQRKISQTLDVVKSILEPIFIRRTKNMKQSNGKPLVELPPKEVV 787
Query: 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603
+ + E E+ Y R+ F ++ G + Y+ IL +LRLRQ C H LV S
Sbjct: 788 IEEVKFNEVEEKLYNWFKARASQSFKDGIKSGDLFKKYSQILTHILRLRQVCCHVDLVGS 847
Query: 604 RGDTQ--------DYSDLN------KLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQ 649
+ + D S+ N + L S +A D+ + V+ V+ L
Sbjct: 848 ANEMEQELVDPNTDLSEANGESDSISMVNNVL-DSYHADNNHDEKFKNNTEVRSVMFPLY 906
Query: 650 KG---EQGECPICLEA---FEDAVLTPCAHRLCRECLLGSW----KTPTSGLCPVCRKTI 699
+ ++ EC IC ++ + LTPC H C C+L + K LCP CR+ I
Sbjct: 907 EKIDLKESECSICTQSPIPLGEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPI 966
Query: 700 S---------------------RQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLC 738
S +Q++ +FQ+ + S+KI L+ L+ L
Sbjct: 967 SKYKIFKLRHRDTSVKEIRFHTKQEMEDPSQNFKFQLYLYDPTKTSSKIQCLINHLKILK 1026
Query: 739 LS--GSKSILFSQWTAFLDLLQIPL 761
+ ++FSQ++++LD+++ L
Sbjct: 1027 EQSPNEQVVVFSQFSSYLDIIENEL 1051
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 157/414 (37%), Gaps = 99/414 (23%)
Query: 147 AVVPCSEIVRFSTKDAGEIGRIPHEWSRCLLPLVR-DKKVEILGCCKSAPEVLGIMDTIV 205
+++ I +++ + EIGRIP + +R L+PL+ D + L D+
Sbjct: 226 SIIRIYTIPKYTEESGREIGRIPEDITRILVPLIDLDISSFYTTVMIDTEKRLSTGDSFY 285
Query: 206 LSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITP------FKKAEF 259
+ I Y++ + F + S+ +++ + R T + ++
Sbjct: 286 IQIDCYLSQNAFSGKELERSMSQSDQDLNALKRQKKMDTRTRFDFSTETNTEAILRLRQY 345
Query: 260 TPSDLYTRK--RPLDSKDGCGLHASLLH-ANKSKVQSAKVNDVD-----DVEPISDSDVD 311
+ S + R +P+ K HA ++ A+++ + N+ D D E + +
Sbjct: 346 SLSRFFQRLNIKPIPQKSD---HADDINEASETPIIIDSENEDDHIVKEDHEQQNLDQLK 402
Query: 312 NIVGVGYSSEI-----EEMEPP-STLKCELRPYQKQALHWMVQLE--------------- 350
I+ SE+ E +PP K +LR YQK L WM+ E
Sbjct: 403 QIMQANQQSELLDSLPETTKPPIFNFKLDLRKYQKHGLSWMLTREREIAVLETLSKNDDD 462
Query: 351 -----------KGRCLDEAATTLHPCWEAYRLLDEREL---------------VVYLNAF 384
K + ++P W+ + + + Y N +
Sbjct: 463 DNDNDILTTQDKANIQERNDAFMNPLWDIFEWPKDTSMHKSESSPTEDRMDDNYFYANMY 522
Query: 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIE 444
+GE ++ P M +GGILAD MGLGKT+ T+AL+ S P D
Sbjct: 523 NGELSLTKPVIRSMVKGGILADEMGLGKTISTLALI--------------NSVPID---- 564
Query: 445 GYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
+M +E K L DK I + T TLII PM+LL QW K K
Sbjct: 565 ----------VMFEENKELE-DKTIYASKT-----TLIIVPMSLLSQWQKEFDK 602
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 68/306 (22%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
+K + +LK ++LRRTK+ T +G+PIL LPP +L+ +E +FY L ++++
Sbjct: 614 MKRFRGLLKAVLLRRTKN-TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQ 672
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNA 627
+++++G I +Y S+L LLLRLRQ C HP+L+++R D +D +
Sbjct: 673 MRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDND--------------S 718
Query: 628 LEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAF-EDAVLTPCAHRLCRECLLG---- 682
+ +++ + ++ Y E V L+ E +C +C++ E ++ PC H LCRECL
Sbjct: 719 FQAKNRAIYNQIY-PEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITS 777
Query: 683 ----SWKTPTSGL---CPVCRKTISRQDLITAPTGSRFQ-----VDIE------------ 718
+ +T + C VC + I + L++ R+ VD +
Sbjct: 778 SEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVDADNKLRTENISELL 837
Query: 719 ---------------------KNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLD 755
K+W STKI L ++ + K ++FSQ+ +FL+
Sbjct: 838 PKQYSNILENRQMGMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLE 897
Query: 756 LLQIPL 761
L +P
Sbjct: 898 LFTVPF 903
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 400 RGGILADAMGLGKTVMTIALLLT 422
+GGILAD MGLGKTV +ALL+T
Sbjct: 410 KGGILADDMGLGKTVQALALLVT 432
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 38/292 (13%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDER-GLKLVQSILKPIMLRRTKS----STDREGRP-I 534
L I P W I P +G+E K ++ +L IMLRRTK+ + ++G
Sbjct: 430 LHINPFNDQSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGA 489
Query: 535 LVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQC 594
L L + + C+ E+E+DFY L + + FV G++ NY +IL LLLRLRQ
Sbjct: 490 LKLSKRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQA 549
Query: 595 CDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALE-GEDKDVPSRAYVQEVVEELQKGEQ 653
C+HP + + + QD N L G++N + D+DV A + E V E+ ++
Sbjct: 550 CNHPQSLNFQFE-QDVDAFNA-----LDGAANTNKLASDQDVDDLANLLETV-EIGSRKK 602
Query: 654 GECPICLEAFEDAVLTPCAH-RLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSR 712
C IC+ A L P H + C++C ++K G+ KT+ + I
Sbjct: 603 SFCTICM-----AELPPDFHEKKCKDC-SRNFKELDKGIQDPNDKTLYKSSKIR------ 650
Query: 713 FQVDIEKNWVESTKIAVLLKELENLCLSG-SKSILFSQWTAFLDLLQIPLSR 763
E KI L ++ E+ + G K+I+FSQ+T FLD++ + L +
Sbjct: 651 ----------EILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRK 692
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 399 ARGGILADAMGLGKTVMTIALLLTH 423
A GGILAD MGLGKT+ IAL+L+H
Sbjct: 255 ASGGILADDMGLGKTIQMIALILSH 279
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1
SV=1
Length = 1674
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 335 LRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394
LRPYQ++A++WM+Q E+ R A +LH W ++ L +Y N ++G +FP
Sbjct: 299 LRPYQREAVNWMLQQEQFRSAPPADNSLHFLWR--EIVTPDGLKLYYNPYTGCIIRDFPH 356
Query: 395 TLQMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSP 453
GGILAD MGLGKTV +AL+LTH+++ Q A +G + Y I P
Sbjct: 357 AGPQLLGGILADEMGLGKTVEVLALILTHTRQ---DVKQDALTLPEGKVVNYFIPTHCP 412
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDLI 705
CPIC + AVLT C H C EC +GS ++ S C +CR+T S +++
Sbjct: 1423 CPICARQLGKQWAVLT-CGHCFCNECTSIIIEQYSVGSHRS--SIKCAICRQTTSHKEVS 1479
Query: 706 TAPTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
T + + DI STK+ +++ L + L G+K+++FS W LD++ L
Sbjct: 1480 YVFTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1539
Query: 762 S 762
+
Sbjct: 1540 T 1540
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + W +L+ PY + + + L S + IM R K + + +PP
Sbjct: 856 LGIEPYCVKHWWIRLLYHPYCKKNPQHL---YSFIAKIMWRSAKKDVIDQ----IQIPPQ 908
Query: 541 DMQVIYCELTEAEKDFY----EALFKRSKVKFDQFVEQGRIL-----HNYASILELLLRL 591
++ + + E+ FY E + + VK + + L +SIL LLRL
Sbjct: 909 TEEMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLRL 968
Query: 592 RQCCDHPFLVMSRGD 606
RQ C HP V RG+
Sbjct: 969 RQACCHPQAV--RGE 981
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1
SV=2
Length = 1683
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 335 LRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394
LRPYQ++A++WM+Q E R + LH W ++ L +Y N ++G E+P+
Sbjct: 304 LRPYQREAVNWMLQQECFRSSPATESALHFLWR--EIVTSEGLKLYYNPYTGCIIREYPN 361
Query: 395 TLQMARGGILADAMGLGKTVMTIALLLTHSQR 426
+ GGILAD MGLGKTV +AL+LTH+++
Sbjct: 362 SGPQLLGGILADEMGLGKTVEVLALILTHTRQ 393
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 656 CPICLEAF--EDAVLTPCAHRLCRECL--------LGSWKTPTSGLCPVCRKTISRQDLI 705
CPIC + AVLT C H C EC+ +GS ++ S C +CR+T S +++
Sbjct: 1432 CPICARQLGKQWAVLT-CGHCFCNECISIIIEQYSVGSHRS--SIKCAICRQTTSHKEIS 1488
Query: 706 TAPTGSRF--QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPL 761
T + + DI STK+ +++ L + L G+K+++FS W LD++ L
Sbjct: 1489 YVFTSEKANQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1548
Query: 762 S 762
+
Sbjct: 1549 T 1549
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 481 LIICPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPA 540
L I P + W +L+ +PY + + + L S + I+ R K + + +PP
Sbjct: 865 LGIEPYCVKHWWVRLLYRPYCKKNPQHL---YSFIAKILWRSAKKDVIDQ----IQIPPQ 917
Query: 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYA------------SILELL 588
++ + + E+ FY ++ +V V + R + ++A SIL L
Sbjct: 918 TEEIHWLHFSPVERHFYH---RQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPL 974
Query: 589 LRLRQCCDHPFLVMSRGD 606
LRLRQ C HP V RG+
Sbjct: 975 LRLRQACCHPQAV--RGE 990
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 33/245 (13%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E LK ++ +L + RRTK T PI+ LPP ++ + L E+ Y +
Sbjct: 471 EAALKRLRILLASTVFRRTKE-TRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSA 529
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGS 624
+ D + L Y +L LLRLRQ C HP+LV S L S
Sbjct: 530 QSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSS---------------LDNS 574
Query: 625 SNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLE-AFEDAVLTPCAHRLCRECL--- 680
+ E+ ++ +E + + C +CL+ + PC H C+EC+
Sbjct: 575 FRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSML 634
Query: 681 ----LGSWKTPT-SGLCPVCRKTISRQDLITA--------PTGSRFQVDIEKNWVESTKI 727
GS T T CP+CR I + L+ A P S Q++++ N S +
Sbjct: 635 VGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSLKQLELDMNQSFSEQE 694
Query: 728 AVLLK 732
++ L+
Sbjct: 695 SIKLR 699
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGL 429
GG++AD MGLGKT+ TIALLLT + L
Sbjct: 271 GGVMADDMGLGKTIQTIALLLTQKSQDPL 299
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E +K +QSILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 665 EEQVKKLQSILKPMMLRRLKDDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 718
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G HN +++ ++ LR+CC+HP+L+
Sbjct: 719 F----SFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2
Length = 1162
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 36/266 (13%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G ++G + + + K ++LRRTK D GRP+++LP Q+ + +L+E E+ Y
Sbjct: 799 DNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
Query: 561 FKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRF 620
F RS+ ++++ SRG+ S N ++
Sbjct: 859 FARSRSALQSYLKRHE--------------------------SRGNQSGRSPNNPFSRVA 892
Query: 621 LK-GSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCREC 679
L+ GS E D P R+ ++ +L + Q C + L + L P L E
Sbjct: 893 LEFGSEEPRHSEAADSP-RSSTVHILSQLLRLRQCCCHLSLLK---SALDPM--ELKGEG 946
Query: 680 LLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCL 739
L+ S + S L + S + G+ F++++ + ESTKI+ LL ELE +
Sbjct: 947 LVLSLEEQLSALT-LSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQR 1005
Query: 740 SGS--KSILFSQWTAFLDLLQIPLSR 763
+ + KS++ SQWT L ++ + L +
Sbjct: 1006 NSASQKSVIVSQWTNMLKVVALHLKK 1031
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 26/102 (25%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLM 456
Q +GGILAD MGLGKT+ IAL+LT Q+ + + + D D
Sbjct: 587 QKPQGGILADDMGLGKTLTMIALILT--QKNQEKKEEKEKSTALTWLSKDDSCD------ 638
Query: 457 KKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQWNKLIQK 498
+ GTLIICP +L+ W ++K
Sbjct: 639 ------------------FTSHGTLIICPASLIHHWKNEVEK 662
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 77/325 (23%)
Query: 491 QWNKLIQKPYEEGDER-GLKLVQSILKPIMLRRTKSSTDR-EGRPILVLPPADMQVIYCE 548
Q NK Q Y+ D + L+ V+ +L IMLRR+K+ D+ +G+P+L LPP ++V
Sbjct: 1174 QRNKQYQ--YDNEDRKNALRKVRVLLNAIMLRRSKA--DKIDGKPLLELPPKIVEVDESR 1229
Query: 549 LTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ 608
L E FY AL +++ + + +Y+S+L LLLRLRQ C H LV+
Sbjct: 1230 LKGEELKFYTALESKNQALAKKLLNNS-TRGSYSSVLTLLLRLRQACCHSELVV------ 1282
Query: 609 DYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE---------CPIC 659
+ ++ +G+ A +D R Y + + + Q + C C
Sbjct: 1283 -------MGEKKAEGTKVANGKSFEDDWLRLYYK--ITHMSGEAQAQVITSMNSMTCFWC 1333
Query: 660 LEAFED---AVLTPCAHRLCREC---------LLGSWKTPTSGL----CPVCRKTISRQD 703
+E E +VLT C H +C C +L K G C C++ + +D
Sbjct: 1334 MEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGGAFAIPCKDCQRLTNEKD 1393
Query: 704 LIT--------------APTGSRFQVDIEKNWVE--------------STKIAVLLKELE 735
+++ + + ++EK ++ STKI ++ ++
Sbjct: 1394 IVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1453
Query: 736 NLCLSGS--KSILFSQWTAFLDLLQ 758
+ + K I+FSQ+T F ++L+
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILE 1478
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 400 RGGILADAMGLGKTVMTIALLLTH 423
+GG+LAD MGLGKT+ IAL+L +
Sbjct: 963 KGGLLADDMGLGKTIQAIALMLAN 986
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P + +I ELT +K +Y A+ +++
Sbjct: 1173 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKEETIIEVELTNIQKKYYRAILEKN 1226
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1227 FA----FLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1259
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P + +I ELT +K +Y A+ +++
Sbjct: 1162 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKEETIIEVELTNIQKKYYRAILEKN 1215
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1216 FT----FLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1248
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P + +I ELT +K +Y A+ +++
Sbjct: 1172 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKEETIIEVELTNIQKKYYRAILEKN 1225
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1226 FT----FLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1258
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 40/167 (23%)
Query: 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYR-LLDERELVVYLNAFSGEAT 389
L EL P+Q + L WM + E+ + L + L P W + L D+R +VY+N G T
Sbjct: 214 LSSELLPFQMRVLEWMKRREEEKFL--TSNDLPPLWYHCKSLFDDR--MVYVNHVYGYMT 269
Query: 390 IEFPSTLQMA----RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEG 445
T +A RGGILAD MG+GKT+ + L+L H L+
Sbjct: 270 FSKEKTYLLASGDIRGGILADEMGMGKTLEVLGLVLHHQLPISLTD-------------- 315
Query: 446 YDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW 492
+ + D+++ + N + TLII P T+L QW
Sbjct: 316 ----------------TCTFDQVVGK-NVKYSKATLIITPSTILDQW 345
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 37/154 (24%)
Query: 638 RAYVQEVVEELQ-KGEQGE-CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVC 695
R Y+ + E + K E + C IC + + +T C H C CL K +S CP+C
Sbjct: 1072 RRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSS--CPMC 1129
Query: 696 ---------------RKTISRQDLITA--PTGSRFQV----------DIEKNWVESTKIA 728
R SRQ+ +T R ++ ++E +KI
Sbjct: 1130 KTKLNKNNAYYIGESRDIYSRQEFVTGFNKRDERLEILDDEAYRQISNMELKESFGSKID 1189
Query: 729 VLLKELENLCLSGS----KSILFSQWTAFLDLLQ 758
+ K L L L + K ++FSQW LD+L
Sbjct: 1190 TISKHL--LYLKHNELYPKVVVFSQWLDVLDVLH 1221
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2
Length = 1138
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 38/267 (14%)
Query: 501 EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEAL 560
+ G +G + + + K ++LRRTK D G+P++ LP Q+ +L+E E+ Y+
Sbjct: 775 DNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIF 834
Query: 561 FKRSKVKFDQFV--EQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAK 618
RS+ ++ ++GR H+ S D+PF +++A+
Sbjct: 835 LARSRSALQSYLKRQEGRGSHHGRSP-----------DNPF--------------SRVAQ 869
Query: 619 RFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRE 678
F S D PS +V + L+ +C C + + L P L E
Sbjct: 870 EFGSSVSQGCPAADSQRPSTVHVLSQLLRLR-----QC-CCHLSLLKSALDPT--ELESE 921
Query: 679 CLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENL- 737
L+ S + S L + + +S + G+ F+ ++ + STK++ LL ELE +
Sbjct: 922 GLVLSLEEQLSALT-LSKVDVSEPSPTVSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQ 980
Query: 738 -CLSGSKSILFSQWTAFLDLLQIPLSR 763
KS++ SQWT+ L ++ + L +
Sbjct: 981 KGPGSQKSVIVSQWTSMLQVVALHLKK 1007
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 28/103 (27%)
Query: 397 QMARGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLM 456
Q +GGILAD MGLGKT+ IAL+LT +
Sbjct: 563 QKPQGGILADDMGLGKTLTMIALILTKKNQ---------------------------QKS 595
Query: 457 KKEPKSLSIDKLIKQ-TNTLINGGTLIICPMTLLGQWNKLIQK 498
K++ +S + L K ++ + GTLI+CP +L+ W ++K
Sbjct: 596 KEKERSEPVTWLSKNDSSVFTSSGTLIVCPASLIHHWKNEVEK 638
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 11/98 (11%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +QSILKP+MLRR K ++ L P +I ELT+ +K +Y A+ +R+
Sbjct: 1051 EEQVQKLQSILKPMMLRRLKEDVEKN------LAPKQETIIEVELTDVQKKYYRAILERN 1104
Query: 565 KVKFDQFVEQGRILH-NYASILELLLRLRQCCDHPFLV 601
F+ G + N ++L ++ LR+CC+HP+L+
Sbjct: 1105 F----SFLSMGATQNSNVPNLLNTMMELRKCCNHPYLI 1138
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1017 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1070
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1071 F----SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1103
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 959 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1012
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1013 F----SFLTKGASQSNTPNLLNTMMELRKCCNHPYLI 1045
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 F----SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K ++ L P +I ELT +K +Y A+ +++
Sbjct: 1015 EEQVQKLQAILKPMMLRRLKEDVEKN------LAPKQETIIEVELTNIQKKYYRAILEKN 1068
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N ++L ++ LR+CC+HP+L+
Sbjct: 1069 F----SFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y A+ +++
Sbjct: 1064 EEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYYRAILEKN 1117
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N +++ ++ LR+CC+HP+L+
Sbjct: 1118 F----SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 1150
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564
E ++ +Q+ILKP+MLRR K +++ L P + +I ELT +K +Y A+ +++
Sbjct: 1063 EEQVQKLQAILKPMMLRRLKEDVEKK------LAPKEETIIEVELTNIQKKYYRAILEKN 1116
Query: 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601
F+ +G N +++ ++ LR+CC+HP+L+
Sbjct: 1117 F----SFLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 1149
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700
E+ CP+C+E F+D V+ C H CR C+ +W+ +S CP CR++I+
Sbjct: 140 AEELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESIT 189
>sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2
Length = 1486
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 31/172 (18%)
Query: 468 LIKQTNTLINGGTLIICPMTLLGQW-----NKLIQKPYEEGDE---RGLKLVQSILKPIM 519
L+ QT L NG + QW +K+I E D+ R + + +L+P +
Sbjct: 845 LMPQT-ALENGKISGFADLDAFQQWFGKPVDKIIAANDSEHDDETRRTVSKLHQVLRPYL 903
Query: 520 LRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILH 579
LRR K+ +++ +P ++YC L++ ++ Y+ R++ K + G
Sbjct: 904 LRRLKADVEKQ------MPAKYEHILYCRLSKRQRFLYDDFMSRAQTK--ATLASG---- 951
Query: 580 NYASILELLLRLRQCCDHPFLV----------MSRGDTQDYSDLNKLAKRFL 621
N+ SI+ L++LR+ C+HP L M R +Y+ LN+L + L
Sbjct: 952 NFMSIINCLMQLRKVCNHPDLFEVRPILTSFCMDRSVMSNYAHLNQLVLKNL 1003
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 31/93 (33%), Gaps = 46/93 (49%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGE 387
P L+ LR YQKQ L+W+ L
Sbjct: 664 PPLLRGTLRTYQKQGLNWLASLYNNNT--------------------------------- 690
Query: 388 ATIEFPSTLQMARGGILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TIALL
Sbjct: 691 -------------NGILADEMGLGKTIQTIALL 710
>sp|O14148|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ino80 PE=1 SV=4
Length = 1604
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 14/101 (13%)
Query: 504 DERGLKLVQSILKPIMLRRTKSSTDRE-GRPILVLPPADMQVIYCELTEAEKDFYEALFK 562
+E+ LK + ILKP MLRR K + E G I + +YC+LT+ +K Y+AL
Sbjct: 1053 NEQQLKRLHMILKPFMLRRVKKNVQSELGEKI-------EKEVYCDLTQRQKILYQAL-- 1103
Query: 563 RSKVKFDQFVEQGRIL---HNYASILELLLRLRQCCDHPFL 600
R ++ + +E+ IL ASI+ L+++ R+ C+HP L
Sbjct: 1104 RRQISIAELLEKA-ILGGDDTVASIMNLVMQFRKVCNHPDL 1143
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 631 EDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSG 690
EDKD A + E+ CP+C+E F+D V+ C H CR C+ W+ +S
Sbjct: 123 EDKDASKTAASLGAAGDF--AEELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSF 180
Query: 691 LCPVCRKTIS 700
CP C+++I+
Sbjct: 181 ACPECKESIT 190
>sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3
SV=1
Length = 1572
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 468 LIKQTNTLINGGTLIICPMTLLGQW-----NKLIQ--KPYEEGDE--RGLKLVQSILKPI 518
L+ QT L NG + QW +K+++ + YE+ +E + + + +L+P
Sbjct: 939 LMPQT-ALENGKVSGFADLDAFQQWFGRPVDKIVETGENYEQDEETKKTVSKLHQVLRPY 997
Query: 519 MLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRIL 578
+LRR K+ +++ +P +IYC L++ ++ Y+ R++ K + + G
Sbjct: 998 LLRRLKADVEKQ------MPGKYEHIIYCRLSKRQRFLYDDFMSRAQTK--ETLASG--- 1046
Query: 579 HNYASILELLLRLRQCCDHPFLVMSR 604
N+ SI+ L++LR+ C+HP L R
Sbjct: 1047 -NFMSIINCLMQLRKVCNHPDLFEVR 1071
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 46/93 (49%)
Query: 328 PSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGE 387
PS L+ LR YQKQ L+W+ L +
Sbjct: 758 PSLLRGTLRIYQKQGLNWLASLYNNKT--------------------------------- 784
Query: 388 ATIEFPSTLQMARGGILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 785 -------------NGILADEMGLGKTIQTISLL 804
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 508 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVK 567
++ + ++L+P +LRR KS ++E LP VI C L++ ++ Y R+K +
Sbjct: 1210 VQKLHAVLRPYLLRRLKSEVEKE------LPSKYEHVITCRLSKRQRFLYNDFMSRAKTR 1263
Query: 568 FDQFVEQGRILHNYASILELLLRLRQCCDHPFL----------VMSRGDTQDYSDLNKLA 617
+ + G NY SI+ L++LR+ C+HP L MSR DY + L
Sbjct: 1264 --ESLASG----NYLSIINCLMQLRKVCNHPDLFEVRPIVTSFAMSRSVVADYEIKDLLV 1317
Query: 618 KRFLKGSSNALEGEDKDV 635
+R L N E D DV
Sbjct: 1318 RRRLL-QENVWEKVDLDV 1334
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 401 GGILADAMGLGKTVMTIALL 420
GILAD MGLGKT+ TI+LL
Sbjct: 1010 NGILADEMGLGKTIQTISLL 1029
>sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2
Length = 1698
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 12/94 (12%)
Query: 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQ 570
+ ++L+P +LRR K+ +++ +P V+YC L++ ++ Y+ R++ K +
Sbjct: 1048 LHTVLRPYILRRLKADVEKQ------MPGKYEHVVYCRLSKRQRYLYDGFMSRAQTK--E 1099
Query: 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604
+ G NY SI+ L++LR+ C+HP L +R
Sbjct: 1100 TLASG----NYLSIINCLMQLRKVCNHPDLFETR 1129
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSG 431
GILAD MGLGKT+ TIALL + G+ G
Sbjct: 845 NGILADEMGLGKTIQTIALLAHLAVEHGVWG 875
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,014,846
Number of Sequences: 539616
Number of extensions: 12012983
Number of successful extensions: 30835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 543
Number of HSP's that attempted gapping in prelim test: 29584
Number of HSP's gapped (non-prelim): 1523
length of query: 763
length of database: 191,569,459
effective HSP length: 125
effective length of query: 638
effective length of database: 124,117,459
effective search space: 79186938842
effective search space used: 79186938842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)