Query 004295
Match_columns 763
No_of_seqs 403 out of 1992
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 20:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 9.3E-55 2E-59 463.4 12.3 354 323-763 173-660 (791)
2 KOG0385 Chromatin remodeling c 100.0 1.5E-43 3.2E-48 395.0 11.3 272 327-761 159-507 (971)
3 KOG1001 Helicase-like transcri 100.0 2E-42 4.4E-47 400.6 21.0 474 193-762 6-560 (674)
4 KOG0389 SNF2 family DNA-depend 100.0 2.3E-42 4.9E-47 386.9 10.1 320 326-762 389-798 (941)
5 KOG0387 Transcription-coupled 100.0 6.8E-41 1.5E-45 375.7 9.9 274 325-762 196-567 (923)
6 KOG4439 RNA polymerase II tran 100.0 2.8E-40 6E-45 365.7 13.4 328 324-763 315-768 (901)
7 KOG0392 SNF2 family DNA-depend 100.0 2.3E-38 4.9E-43 366.2 12.5 240 311-604 952-1284(1549)
8 PLN03142 Probable chromatin-re 100.0 1.1E-37 2.4E-42 374.3 15.4 273 325-762 160-508 (1033)
9 KOG0384 Chromodomain-helicase 100.0 4.4E-38 9.5E-43 365.8 8.5 275 333-762 369-720 (1373)
10 KOG0391 SNF2 family DNA-depend 100.0 4.9E-37 1.1E-41 350.9 11.4 220 325-604 606-908 (1958)
11 KOG0386 Chromatin remodeling c 100.0 3.2E-36 6.9E-41 344.6 5.2 291 311-762 370-747 (1157)
12 KOG0388 SNF2 family DNA-depend 100.0 1E-34 2.2E-39 320.2 9.6 211 324-603 557-856 (1185)
13 KOG1015 Transcription regulato 100.0 1.5E-29 3.3E-34 285.9 4.3 231 324-602 658-998 (1567)
14 KOG0390 DNA repair protein, SN 99.9 1.9E-26 4.1E-31 266.5 14.3 217 327-602 231-544 (776)
15 PF00176 SNF2_N: SNF2 family N 99.9 7.3E-27 1.6E-31 250.2 3.0 196 398-601 24-299 (299)
16 COG0553 HepA Superfamily II DN 99.9 3.9E-25 8.5E-30 270.6 12.5 221 329-603 333-660 (866)
17 KOG0383 Predicted helicase [Ge 99.9 4.5E-24 9.8E-29 245.0 7.3 143 505-762 510-652 (696)
18 KOG1016 Predicted DNA helicase 99.9 5.7E-23 1.2E-27 229.0 2.2 224 328-602 248-608 (1387)
19 KOG1000 Chromatin remodeling p 99.8 6E-19 1.3E-23 190.5 7.3 78 328-454 192-269 (689)
20 PF08797 HIRAN: HIRAN domain; 99.6 2.1E-15 4.5E-20 137.9 7.0 100 98-211 1-107 (107)
21 PRK04914 ATP-dependent helicas 99.5 6.3E-14 1.4E-18 169.5 12.2 70 330-447 148-220 (956)
22 KOG0298 DEAD box-containing he 99.4 6E-14 1.3E-18 166.3 3.7 90 510-603 591-693 (1394)
23 TIGR00603 rad25 DNA repair hel 98.8 2.6E-08 5.5E-13 117.7 13.1 69 332-449 253-322 (732)
24 PLN03208 E3 ubiquitin-protein 98.8 4E-09 8.6E-14 104.2 3.8 58 650-707 15-86 (193)
25 smart00504 Ubox Modified RING 98.6 5.1E-08 1.1E-12 80.0 3.8 50 654-705 2-51 (63)
26 KOG0320 Predicted E3 ubiquitin 98.6 2.6E-08 5.6E-13 95.8 2.3 55 650-706 128-184 (187)
27 PF15227 zf-C3HC4_4: zinc fing 98.6 4.4E-08 9.4E-13 73.8 3.0 40 656-695 1-42 (42)
28 PF13920 zf-C3HC4_3: Zinc fing 98.5 1.1E-07 2.3E-12 74.6 2.8 46 653-700 2-48 (50)
29 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.4E-07 3E-12 69.9 2.4 38 656-695 1-39 (39)
30 KOG0317 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 97.9 2.2 53 651-705 237-289 (293)
31 PHA02929 N1R/p28-like protein; 98.3 4.8E-07 1E-11 93.3 4.5 48 651-700 172-227 (238)
32 PRK13766 Hef nuclease; Provisi 98.3 9.7E-06 2.1E-10 99.1 16.1 40 723-762 345-386 (773)
33 KOG2164 Predicted E3 ubiquitin 98.3 3.9E-07 8.5E-12 100.9 3.5 55 653-707 186-243 (513)
34 PF00097 zf-C3HC4: Zinc finger 98.2 4.8E-07 1E-11 67.7 2.0 40 656-695 1-41 (41)
35 TIGR00599 rad18 DNA repair pro 98.2 1.3E-06 2.8E-11 96.5 5.5 51 652-704 25-75 (397)
36 KOG0823 Predicted E3 ubiquitin 98.2 7.8E-07 1.7E-11 89.6 2.5 58 650-707 44-102 (230)
37 PF13639 zf-RING_2: Ring finge 98.2 5.5E-07 1.2E-11 68.5 1.0 41 654-696 1-44 (44)
38 PF04564 U-box: U-box domain; 98.1 3E-06 6.4E-11 72.0 3.3 52 653-705 4-55 (73)
39 PHA02926 zinc finger-like prot 98.0 3.7E-06 7.9E-11 84.1 4.3 52 649-700 166-230 (242)
40 cd00162 RING RING-finger (Real 98.0 5.7E-06 1.2E-10 62.2 3.1 44 655-699 1-45 (45)
41 PF14634 zf-RING_5: zinc-RING 97.9 6.4E-06 1.4E-10 62.7 3.1 41 655-697 1-44 (44)
42 COG5574 PEX10 RING-finger-cont 97.9 3.3E-06 7.2E-11 86.4 1.9 53 652-704 214-266 (271)
43 KOG0978 E3 ubiquitin ligase in 97.9 2.7E-06 5.9E-11 98.7 0.8 53 653-706 643-695 (698)
44 PF13445 zf-RING_UBOX: RING-ty 97.9 4.4E-06 9.5E-11 63.0 1.4 37 656-693 1-43 (43)
45 PF14835 zf-RING_6: zf-RING of 97.9 7.6E-06 1.6E-10 66.2 2.1 47 654-704 8-55 (65)
46 KOG0287 Postreplication repair 97.8 6E-06 1.3E-10 86.5 1.2 49 654-704 24-72 (442)
47 smart00184 RING Ring finger. E 97.8 1.4E-05 3E-10 57.9 2.7 39 656-695 1-39 (39)
48 COG5432 RAD18 RING-finger-cont 97.7 1.7E-05 3.7E-10 81.6 2.2 45 654-700 26-70 (391)
49 TIGR00570 cdk7 CDK-activating 97.6 3.8E-05 8.2E-10 81.7 4.0 50 654-704 4-58 (309)
50 KOG0298 DEAD box-containing he 97.6 5.8E-05 1.3E-09 91.5 5.5 86 653-761 1153-1241(1394)
51 KOG4172 Predicted E3 ubiquitin 97.5 1.8E-05 3.8E-10 61.3 -0.2 46 654-700 8-54 (62)
52 PF11496 HDA2-3: Class II hist 97.4 0.0007 1.5E-08 73.0 10.6 62 541-602 4-74 (297)
53 KOG2177 Predicted E3 ubiquitin 97.4 5.6E-05 1.2E-09 80.7 2.0 45 651-697 11-55 (386)
54 KOG0824 Predicted E3 ubiquitin 97.4 8.2E-05 1.8E-09 77.6 2.1 53 653-706 7-59 (324)
55 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00033 7.2E-09 59.4 3.1 42 653-696 19-73 (73)
56 KOG0311 Predicted E3 ubiquitin 97.1 0.00013 2.8E-09 77.7 -0.1 47 653-700 43-90 (381)
57 COG5540 RING-finger-containing 97.0 0.00034 7.4E-09 72.8 2.1 49 651-700 321-372 (374)
58 KOG4265 Predicted E3 ubiquitin 96.9 0.00036 7.8E-09 74.9 1.7 49 651-701 288-337 (349)
59 PF14555 UBA_4: UBA-like domai 96.9 0.00065 1.4E-08 51.4 2.3 40 7-48 1-40 (43)
60 PF11789 zf-Nse: Zinc-finger o 96.8 0.00072 1.6E-08 54.4 2.4 42 653-694 11-53 (57)
61 COG1061 SSL2 DNA or RNA helica 96.8 0.017 3.6E-07 66.2 14.3 184 329-564 31-243 (442)
62 KOG2879 Predicted E3 ubiquitin 96.7 0.00088 1.9E-08 69.2 2.7 49 652-700 238-287 (298)
63 KOG2660 Locus-specific chromos 96.6 0.0004 8.8E-09 73.6 -0.4 49 652-702 14-63 (331)
64 KOG4692 Predicted E3 ubiquitin 96.6 0.00097 2.1E-08 70.7 1.9 49 651-701 420-468 (489)
65 PF12861 zf-Apc11: Anaphase-pr 96.6 0.0019 4.1E-08 55.8 3.1 48 653-700 21-82 (85)
66 COG5152 Uncharacterized conser 96.5 0.0008 1.7E-08 66.0 0.8 43 654-698 197-239 (259)
67 KOG4159 Predicted E3 ubiquitin 96.4 0.0015 3.2E-08 72.6 2.1 48 652-701 83-130 (398)
68 KOG1813 Predicted E3 ubiquitin 96.3 0.0014 3.1E-08 68.4 1.2 45 654-700 242-286 (313)
69 KOG1785 Tyrosine kinase negati 96.3 0.0016 3.5E-08 70.0 1.4 50 654-703 370-419 (563)
70 COG5243 HRD1 HRD ubiquitin lig 96.2 0.0028 6.1E-08 67.7 2.6 48 650-699 284-344 (491)
71 KOG0802 E3 ubiquitin ligase [P 96.1 0.0021 4.6E-08 75.3 1.0 48 652-701 290-342 (543)
72 KOG1039 Predicted E3 ubiquitin 95.9 0.0035 7.5E-08 68.4 1.8 51 650-700 158-221 (344)
73 KOG4628 Predicted E3 ubiquitin 95.6 0.0065 1.4E-07 66.0 2.3 52 654-706 230-284 (348)
74 PF04851 ResIII: Type III rest 95.5 0.01 2.2E-07 58.3 3.0 44 400-445 26-70 (184)
75 KOG0828 Predicted E3 ubiquitin 95.3 0.0068 1.5E-07 67.1 1.4 47 653-700 571-634 (636)
76 KOG3039 Uncharacterized conser 95.1 0.016 3.5E-07 59.0 3.1 56 652-709 220-279 (303)
77 KOG1734 Predicted RING-contain 95.0 0.0078 1.7E-07 62.0 0.6 60 651-710 222-291 (328)
78 KOG0297 TNF receptor-associate 94.9 0.014 3E-07 65.5 2.4 52 652-705 20-72 (391)
79 KOG1571 Predicted E3 ubiquitin 94.9 0.0089 1.9E-07 64.5 0.7 42 654-700 306-347 (355)
80 smart00487 DEXDc DEAD-like hel 94.8 0.053 1.2E-06 53.2 6.0 26 400-425 25-50 (201)
81 COG1111 MPH1 ERCC4-like helica 94.7 0.58 1.3E-05 53.2 14.1 41 722-762 345-387 (542)
82 COG5222 Uncharacterized conser 94.5 0.019 4.1E-07 59.8 1.8 43 654-697 275-318 (427)
83 PF14570 zf-RING_4: RING/Ubox 94.2 0.039 8.5E-07 42.6 2.5 43 656-699 1-47 (48)
84 PF04641 Rtf2: Rtf2 RING-finge 94.1 0.045 9.7E-07 58.1 3.8 54 653-709 113-170 (260)
85 KOG0804 Cytoplasmic Zn-finger 94.0 0.024 5.3E-07 62.5 1.6 46 651-700 173-222 (493)
86 PF14447 Prok-RING_4: Prokaryo 93.7 0.033 7.2E-07 44.0 1.4 47 654-704 8-54 (55)
87 KOG4739 Uncharacterized protei 93.6 0.031 6.8E-07 57.4 1.4 46 655-704 5-52 (233)
88 KOG1493 Anaphase-promoting com 93.5 0.025 5.4E-07 47.3 0.4 35 666-700 45-81 (84)
89 KOG4445 Uncharacterized conser 93.4 0.071 1.5E-06 55.9 3.7 48 654-701 116-187 (368)
90 KOG4275 Predicted E3 ubiquitin 93.2 0.02 4.3E-07 59.8 -0.7 41 654-700 301-342 (350)
91 PHA02558 uvsW UvsW helicase; P 93.1 0.046 9.9E-07 63.7 1.9 49 401-449 131-182 (501)
92 COG5219 Uncharacterized conser 92.9 0.037 8E-07 65.7 0.8 49 652-700 1468-1523(1525)
93 KOG1814 Predicted E3 ubiquitin 92.7 0.061 1.3E-06 58.9 2.1 43 654-696 185-236 (445)
94 KOG0825 PHD Zn-finger protein 92.7 0.028 6.1E-07 65.4 -0.6 49 654-704 124-175 (1134)
95 smart00744 RINGv The RING-vari 91.9 0.13 2.8E-06 40.1 2.5 42 655-696 1-49 (49)
96 KOG3039 Uncharacterized conser 91.8 0.08 1.7E-06 54.1 1.5 31 654-684 44-74 (303)
97 KOG1645 RING-finger-containing 91.7 0.075 1.6E-06 58.1 1.3 53 654-706 5-62 (463)
98 KOG3002 Zn finger protein [Gen 91.7 0.11 2.3E-06 56.1 2.4 42 653-700 48-91 (299)
99 PF11793 FANCL_C: FANCL C-term 91.3 0.056 1.2E-06 45.5 -0.1 49 653-701 2-67 (70)
100 KOG3800 Predicted E3 ubiquitin 91.0 0.14 3.1E-06 53.7 2.5 49 655-704 2-55 (300)
101 cd00046 DEXDc DEAD-like helica 90.7 0.1 2.2E-06 47.8 1.0 41 401-441 2-45 (144)
102 PF00627 UBA: UBA/TS-N domain; 90.4 0.26 5.6E-06 35.9 2.7 36 5-43 1-36 (37)
103 KOG0826 Predicted E3 ubiquitin 89.6 0.14 3.1E-06 54.5 1.1 53 651-705 298-351 (357)
104 KOG1941 Acetylcholine receptor 89.5 0.12 2.5E-06 56.1 0.3 49 652-700 364-416 (518)
105 COG5175 MOT2 Transcriptional r 88.5 0.24 5.3E-06 52.7 1.9 52 652-704 13-68 (480)
106 COG5236 Uncharacterized conser 88.4 0.19 4.1E-06 53.7 1.0 49 650-698 58-106 (493)
107 cd00194 UBA Ubiquitin Associat 87.5 0.61 1.3E-05 33.9 2.9 36 8-46 3-38 (38)
108 COG5220 TFB3 Cdk activating ki 86.7 0.17 3.8E-06 51.4 -0.5 51 653-704 10-68 (314)
109 PF02845 CUE: CUE domain; Int 86.4 0.63 1.4E-05 34.9 2.6 40 7-47 2-41 (42)
110 smart00165 UBA Ubiquitin assoc 86.1 0.79 1.7E-05 33.1 2.9 35 8-45 3-37 (37)
111 KOG4367 Predicted Zn-finger pr 86.1 0.47 1E-05 52.1 2.4 35 652-686 3-37 (699)
112 PF05290 Baculo_IE-1: Baculovi 85.1 0.55 1.2E-05 43.9 2.0 51 651-701 78-133 (140)
113 KOG4362 Transcriptional regula 84.7 0.32 6.9E-06 57.3 0.4 54 653-706 21-75 (684)
114 PF07800 DUF1644: Protein of u 84.4 0.79 1.7E-05 44.3 2.7 19 653-671 2-20 (162)
115 smart00546 CUE Domain that may 83.7 1.6 3.5E-05 32.7 3.8 41 6-47 2-42 (43)
116 KOG1123 RNA polymerase II tran 83.7 0.37 7.9E-06 54.4 0.3 102 332-490 300-402 (776)
117 PF05883 Baculo_RING: Baculovi 83.6 0.71 1.5E-05 43.5 2.1 47 637-683 10-65 (134)
118 KOG0827 Predicted E3 ubiquitin 82.8 0.64 1.4E-05 50.7 1.6 46 654-699 5-55 (465)
119 PHA03096 p28-like protein; Pro 81.5 0.66 1.4E-05 49.7 1.2 45 654-698 179-235 (284)
120 PF13872 AAA_34: P-loop contai 80.8 2 4.3E-05 46.3 4.5 48 501-559 253-302 (303)
121 KOG1812 Predicted E3 ubiquitin 80.2 0.77 1.7E-05 51.5 1.2 51 653-703 146-206 (384)
122 PRK11448 hsdR type I restricti 80.1 2.3 5E-05 54.2 5.5 36 400-435 434-472 (1123)
123 KOG2114 Vacuolar assembly/sort 79.2 1.6 3.5E-05 52.2 3.4 39 654-697 841-880 (933)
124 COG5194 APC11 Component of SCF 78.6 1.3 2.8E-05 37.7 1.8 30 669-700 52-81 (88)
125 KOG1100 Predicted E3 ubiquitin 78.5 1.1 2.4E-05 45.9 1.6 39 656-700 161-200 (207)
126 KOG4185 Predicted E3 ubiquitin 78.4 2 4.4E-05 46.4 3.7 45 654-699 4-54 (296)
127 KOG2932 E3 ubiquitin ligase in 78.4 0.85 1.8E-05 48.3 0.8 43 654-700 91-134 (389)
128 KOG3970 Predicted E3 ubiquitin 77.3 3 6.5E-05 42.3 4.2 57 643-699 39-104 (299)
129 KOG2817 Predicted E3 ubiquitin 77.0 1.7 3.6E-05 48.0 2.5 48 653-700 334-385 (394)
130 cd00268 DEADc DEAD-box helicas 74.5 3.6 7.8E-05 41.2 4.1 35 401-435 38-78 (203)
131 PF08746 zf-RING-like: RING-li 73.7 3.9 8.5E-05 30.9 3.1 40 656-695 1-43 (43)
132 COG4096 HsdR Type I site-speci 73.3 4.9 0.00011 48.6 5.2 77 305-426 136-212 (875)
133 KOG3579 Predicted E3 ubiquitin 72.5 1.7 3.6E-05 45.6 1.1 36 652-687 267-306 (352)
134 PF10272 Tmpp129: Putative tra 68.3 3.7 8E-05 45.4 2.7 33 671-703 311-354 (358)
135 PF07191 zinc-ribbons_6: zinc- 67.9 0.89 1.9E-05 38.0 -1.7 41 654-701 2-42 (70)
136 KOG2034 Vacuolar sorting prote 67.0 2.7 5.8E-05 50.8 1.3 33 652-684 816-850 (911)
137 PHA02825 LAP/PHD finger-like p 66.4 5 0.00011 39.0 2.8 50 652-702 7-61 (162)
138 COG3813 Uncharacterized protei 66.3 5.2 0.00011 33.4 2.5 45 654-702 6-54 (84)
139 PF11547 E3_UbLigase_EDD: E3 u 63.1 10 0.00022 29.1 3.3 43 3-46 6-48 (53)
140 KOG4718 Non-SMC (structural ma 61.2 66 0.0014 32.9 9.6 45 651-697 179-224 (235)
141 KOG3842 Adaptor protein Pellin 60.7 6.4 0.00014 42.0 2.6 49 653-702 341-416 (429)
142 KOG3161 Predicted E3 ubiquitin 60.6 3.8 8.2E-05 47.6 1.0 36 654-693 12-51 (861)
143 KOG1428 Inhibitor of type V ad 60.4 4 8.6E-05 51.3 1.2 51 652-702 3485-3546(3738)
144 PHA02862 5L protein; Provision 60.3 5.4 0.00012 38.0 1.8 50 654-704 3-57 (156)
145 PF12340 DUF3638: Protein of u 60.0 22 0.00047 37.1 6.3 27 401-427 43-69 (229)
146 PF02891 zf-MIZ: MIZ/SP-RING z 60.0 6 0.00013 30.9 1.7 45 654-698 3-50 (50)
147 PF10367 Vps39_2: Vacuolar sor 59.8 5 0.00011 36.0 1.5 31 651-681 76-108 (109)
148 PF08938 HBS1_N: HBS1 N-termin 58.5 5.7 0.00012 34.2 1.5 39 9-47 31-70 (79)
149 PLN02436 cellulose synthase A 57.1 6.7 0.00015 48.8 2.3 50 651-701 34-90 (1094)
150 KOG0289 mRNA splicing factor [ 57.1 13 0.00029 41.5 4.4 76 655-736 2-78 (506)
151 KOG1815 Predicted E3 ubiquitin 54.8 9.6 0.00021 43.8 3.0 55 651-705 68-131 (444)
152 PRK10689 transcription-repair 53.2 25 0.00054 45.3 6.6 39 400-438 622-661 (1147)
153 PF06906 DUF1272: Protein of u 52.9 14 0.0003 29.5 2.7 45 654-702 6-54 (57)
154 TIGR00348 hsdR type I site-spe 50.8 14 0.0003 44.8 3.6 79 331-449 235-317 (667)
155 PLN02638 cellulose synthase A 49.7 9.2 0.0002 47.7 1.9 50 651-701 15-71 (1079)
156 PLN02400 cellulose synthase 49.3 9.5 0.00021 47.7 1.9 50 651-701 34-90 (1085)
157 PLN02189 cellulose synthase 48.8 11 0.00024 46.9 2.4 49 652-701 33-88 (1040)
158 KOG1364 Predicted ubiquitin re 48.8 15 0.00033 40.0 3.2 43 6-49 6-48 (356)
159 KOG1952 Transcription factor N 48.7 14 0.0003 44.7 3.0 60 637-697 176-244 (950)
160 PF00397 WW: WW domain; Inter 48.1 20 0.00044 24.8 2.7 27 366-393 5-31 (31)
161 KOG2979 Protein involved in DN 47.2 41 0.00089 35.4 5.8 44 653-696 176-222 (262)
162 PF12906 RINGv: RING-variant d 47.2 7 0.00015 30.1 0.2 40 656-695 1-47 (47)
163 PF14569 zf-UDP: Zinc-binding 45.7 18 0.0004 30.8 2.5 50 651-701 7-63 (80)
164 KOG3899 Uncharacterized conser 44.7 11 0.00024 39.9 1.2 34 671-704 325-369 (381)
165 PTZ00424 helicase 45; Provisio 44.1 27 0.00059 39.0 4.5 35 402-436 68-106 (401)
166 PF00270 DEAD: DEAD/DEAH box h 43.9 27 0.00059 33.4 3.9 34 402-435 17-53 (169)
167 cd00079 HELICc Helicase superf 42.6 30 0.00065 31.3 3.8 39 724-762 11-49 (131)
168 KOG2068 MOT2 transcription fac 41.9 21 0.00046 38.8 2.9 46 654-701 250-299 (327)
169 KOG1940 Zn-finger protein [Gen 41.6 12 0.00026 40.0 1.0 48 653-702 158-209 (276)
170 KOG2789 Putative Zn-finger pro 41.1 21 0.00045 39.5 2.7 54 654-707 75-152 (482)
171 PLN02195 cellulose synthase A 41.0 22 0.00047 44.2 3.2 47 654-701 7-60 (977)
172 PF04710 Pellino: Pellino; In 40.8 9.1 0.0002 42.4 0.0 48 653-701 328-402 (416)
173 COG5183 SSM4 Protein involved 39.3 25 0.00055 42.2 3.2 55 653-707 12-73 (1175)
174 PF07975 C1_4: TFIIH C1-like d 38.8 32 0.00069 27.1 2.7 26 669-696 25-50 (51)
175 PRK01172 ski2-like helicase; P 38.5 30 0.00066 41.9 4.0 36 401-436 39-75 (674)
176 KOG3268 Predicted E3 ubiquitin 37.7 18 0.00038 35.7 1.4 48 653-700 165-228 (234)
177 PF15616 TerY-C: TerY-C metal 37.7 21 0.00046 33.8 1.9 41 653-701 77-117 (131)
178 TIGR00643 recG ATP-dependent D 37.1 46 0.001 40.1 5.2 47 401-447 258-306 (630)
179 PF05605 zf-Di19: Drought indu 36.6 22 0.00049 28.0 1.6 39 653-698 2-40 (54)
180 TIGR00580 mfd transcription-re 32.5 76 0.0016 40.0 6.1 38 401-438 474-512 (926)
181 KOG2231 Predicted E3 ubiquitin 31.9 28 0.0006 41.6 2.1 46 655-700 2-52 (669)
182 PF03854 zf-P11: P-11 zinc fin 31.7 24 0.00052 27.3 1.0 32 667-700 14-46 (50)
183 PRK15483 type III restriction- 31.0 66 0.0014 40.4 5.2 37 400-436 60-99 (986)
184 PLN02915 cellulose synthase A 31.0 31 0.00066 43.3 2.3 48 653-701 15-69 (1044)
185 PF13086 AAA_11: AAA domain; P 30.9 57 0.0012 32.7 4.1 16 334-349 1-16 (236)
186 KOG0354 DEAD-box like helicase 30.5 46 0.001 40.3 3.6 23 401-423 78-100 (746)
187 COG5109 Uncharacterized conser 30.4 33 0.00071 36.9 2.1 48 654-701 337-388 (396)
188 PF06972 DUF1296: Protein of u 30.4 78 0.0017 25.7 3.7 42 8-50 7-48 (60)
189 KOG4439 RNA polymerase II tran 30.1 22 0.00048 42.4 0.9 47 327-418 217-263 (901)
190 TIGR00614 recQ_fam ATP-depende 30.0 61 0.0013 37.4 4.5 33 402-436 29-61 (470)
191 KOG3113 Uncharacterized conser 29.9 47 0.001 34.7 3.1 52 653-708 111-166 (293)
192 PF04216 FdhE: Protein involve 29.7 17 0.00037 39.2 -0.1 44 653-698 172-220 (290)
193 TIGR03714 secA2 accessory Sec 29.0 63 0.0014 39.6 4.4 51 335-435 69-120 (762)
194 TIGR01562 FdhE formate dehydro 28.9 23 0.0005 38.5 0.7 43 654-698 185-233 (305)
195 PRK03564 formate dehydrogenase 28.6 28 0.00062 37.9 1.3 43 653-697 187-234 (309)
196 PF14353 CpXC: CpXC protein 27.7 1.5E+02 0.0033 27.6 6.0 105 654-758 2-113 (128)
197 PRK10917 ATP-dependent DNA hel 26.3 86 0.0019 38.2 5.1 36 402-437 285-321 (681)
198 PRK14559 putative protein seri 25.9 48 0.001 39.9 2.7 28 724-751 130-160 (645)
199 PRK11776 ATP-dependent RNA hel 25.6 86 0.0019 36.0 4.7 36 401-436 43-82 (460)
200 PRK00254 ski2-like helicase; P 25.4 71 0.0015 39.1 4.2 36 401-436 41-78 (720)
201 PLN00206 DEAD-box ATP-dependen 25.2 70 0.0015 37.5 3.9 19 401-419 160-178 (518)
202 PF12773 DZR: Double zinc ribb 24.8 74 0.0016 24.3 2.7 29 674-702 13-42 (50)
203 PRK04023 DNA polymerase II lar 24.7 52 0.0011 41.0 2.7 48 653-704 626-678 (1121)
204 COG1205 Distinct helicase fami 24.3 1.1E+02 0.0024 38.2 5.5 23 402-424 88-110 (851)
205 COG5627 MMS21 DNA repair prote 23.9 43 0.00092 34.7 1.5 52 653-704 189-243 (275)
206 PRK11057 ATP-dependent DNA hel 23.4 95 0.0021 37.2 4.6 34 401-436 42-75 (607)
207 PLN02248 cellulose synthase-li 21.8 57 0.0012 41.3 2.3 34 669-704 148-181 (1135)
208 smart00456 WW Domain with 2 co 21.6 1.1E+02 0.0024 20.8 2.9 29 364-394 3-31 (32)
209 COG0068 HypF Hydrogenase matur 21.1 47 0.001 39.8 1.4 25 675-699 153-183 (750)
210 PRK02362 ski2-like helicase; P 20.7 1.1E+02 0.0024 37.6 4.5 36 401-436 41-77 (737)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=9.3e-55 Score=463.44 Aligned_cols=354 Identities=34% Similarity=0.538 Sum_probs=277.0
Q ss_pred ccCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCc
Q 004295 323 EEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGG 402 (763)
Q Consensus 323 ~e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GG 402 (763)
..++||..+...|.|||++||+|+...|.. ...||
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~S---------------------------------------------s~~GG 207 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEES---------------------------------------------SVAGG 207 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhhh---------------------------------------------hhccc
Confidence 347899999999999999999999988752 36799
Q ss_pred eeecCCCCchHHHHHHHHHhcccCCCCcccccCCCCCCCCcccccccc--------------------------------
Q 004295 403 ILADAMGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISD-------------------------------- 450 (763)
Q Consensus 403 ILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~sl~~~w~~ei~~~~~-------------------------------- 450 (763)
|||||||||||||+|||+++.....++++++|+..+.+|.+||.....
T Consensus 208 iLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~R~~nikel~~YDvVLTty~v 287 (791)
T KOG1002|consen 208 ILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGAKRDKNIKELMNYDVVLTTYAV 287 (791)
T ss_pred eehhhhccchHHHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEecccccCCHHHhhcCcEEEEecHH
Confidence 999999999999999999999888899999999999999998765211
Q ss_pred ------------------------------------cCccccccCccccchHHHhhhccccccCceEEE-----------
Q 004295 451 ------------------------------------QSPNLMKKEPKSLSIDKLIKQTNTLINGGTLII----------- 483 (763)
Q Consensus 451 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV----------- 483 (763)
++|.++.+........-.+.+.++|+..||++.
T Consensus 288 vEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiR 367 (791)
T KOG1002|consen 288 VESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIR 367 (791)
T ss_pred HHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHH
Confidence 111111111111111113455677888888762
Q ss_pred ----cCcc-------------------------------hhhhhhhhcCCCcccC-----CHHHHHHHHHHHhhhheeec
Q 004295 484 ----CPMT-------------------------------LLGQWNKLIQKPYEEG-----DERGLKLVQSILKPIMLRRT 523 (763)
Q Consensus 484 ----~P~s-------------------------------ll~qW~~~i~~P~e~~-----~~~~~~~L~~iL~pi~LRRt 523 (763)
.|++ -.-.|+.+..+|+... ...++..++.+|+.+|||||
T Consensus 368 FL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrT 447 (791)
T KOG1002|consen 368 FLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRT 447 (791)
T ss_pred HHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHh
Confidence 2321 0112377777887643 24678899999999999999
Q ss_pred ccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccccc
Q 004295 524 KSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603 (763)
Q Consensus 524 K~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~ 603 (763)
|-....| +-|||+.+.+..=-|++.|.++|+.++...++.|+.+++.|.++.||++||.+|+||||+.+||+|+..
T Consensus 448 kl~RAdD----LgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~ 523 (791)
T KOG1002|consen 448 KLERADD----LGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLY 523 (791)
T ss_pred hcccccc----cCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeee
Confidence 9998887 889999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHHHHhhh
Q 004295 604 RGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGS 683 (763)
Q Consensus 604 ~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~ 683 (763)
.... + ... .+.+..+|.+|.++.++++.+.|.|.||+-|+.+|
T Consensus 524 S~~~------------------n-~~~------------------enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~ey 566 (791)
T KOG1002|consen 524 SANA------------------N-LPD------------------ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEY 566 (791)
T ss_pred hhhc------------------C-CCc------------------cccCceeecccCChhhhhHhhhhhHHHHHHHHHHH
Confidence 2100 0 000 01234799999999999999999999999999998
Q ss_pred hcCC---CCCCCCCCCccccccccccCCCC---Ccc-------ccccccccccchhHHHHHHHHHHHhcC--CCeEEEec
Q 004295 684 WKTP---TSGLCPVCRKTISRQDLITAPTG---SRF-------QVDIEKNWVESTKIAVLLKELENLCLS--GSKSILFS 748 (763)
Q Consensus 684 ~~~~---~~~~CP~Cr~~i~~~~l~~~~~~---~~~-------~~~~~~~~~~SsKi~aLl~~L~~l~~~--~~KvVVFS 748 (763)
+... ....||.|..+++.+.--....+ ..| +++. ++|++|+||+||++.|.-+++. ..|+||||
T Consensus 567 v~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm-~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFS 645 (791)
T KOG1002|consen 567 VESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINM-DDWQSSTKIEALVEELYFLRERDRTAKSIVFS 645 (791)
T ss_pred HHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcch-hhhcchhHHHHHHHHHHHHHHcccchhhhhHH
Confidence 8542 35889999998876522111110 011 2233 3799999999999999999877 88999999
Q ss_pred CchhHHHHhhhhccC
Q 004295 749 QWTAFLDLLQIPLSR 763 (763)
Q Consensus 749 Qfts~LDlIe~~L~r 763 (763)
|||||||||+..|.|
T Consensus 646 QFTSmLDLi~~rL~k 660 (791)
T KOG1002|consen 646 QFTSMLDLIEWRLGK 660 (791)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998865
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.5e-43 Score=394.95 Aligned_cols=272 Identities=30% Similarity=0.478 Sum_probs=212.8
Q ss_pred CCCccC-CCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceee
Q 004295 327 PPSTLK-CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILA 405 (763)
Q Consensus 327 ~p~~l~-~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILA 405 (763)
.|..+. ..||+||.+||+||..+ |+ .+.+||||
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l----------------~e------------------------------ngingILa 192 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISL----------------YE------------------------------NGINGILA 192 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHH----------------Hh------------------------------cCcccEee
Confidence 677777 89999999999999986 32 35689999
Q ss_pred cCCCCchHHHHHHHHHhccc----CCCCcccccCCCCCCCCccccccccc------------------------------
Q 004295 406 DAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYDISDQ------------------------------ 451 (763)
Q Consensus 406 DEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~sl~~~w~~ei~~~~~~------------------------------ 451 (763)
||||||||+|+|||+...+. ++|.+|++|.|.+.||.+|+.+|.+.
T Consensus 193 DEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~i 272 (971)
T KOG0385|consen 193 DEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCI 272 (971)
T ss_pred hhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEe
Confidence 99999999999999887665 67999999999999999998775433
Q ss_pred -------------------------CccccccCccccchHHHhhhccccccCceEEEcCcchhhhh--------------
Q 004295 452 -------------------------SPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW-------------- 492 (763)
Q Consensus 452 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW-------------- 492 (763)
+|+.++...++...-+.....+++..+|||+ .++|-..|
T Consensus 273 TsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPL--QNNL~ELWaLLnFllPdiF~~~ 350 (971)
T KOG0385|consen 273 TSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPL--QNNLHELWALLNFLLPDIFNSA 350 (971)
T ss_pred ehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcc--cccHHHHHHHHHhhchhhccCH
Confidence 3333333333333333455667888999999 66666666
Q ss_pred ---hhhcCCCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 004295 493 ---NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFD 569 (763)
Q Consensus 493 ---~~~i~~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~ 569 (763)
..+|..-...++.....+|+.+|+||+|||.|.+|... ||||.+.+++|.||..|+++|.+++......++
T Consensus 351 e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s------LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n 424 (971)
T KOG0385|consen 351 EDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS------LPPKKELIIYVGMSSMQKKWYKAILMKDLDALN 424 (971)
T ss_pred HHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc------CCCcceeeEeccchHHHHHHHHHHHHhcchhhc
Confidence 44555555667777899999999999999999999887 999999999999999999999999887544433
Q ss_pred HHhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHh
Q 004295 570 QFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQ 649 (763)
Q Consensus 570 ~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 649 (763)
. .+.. ..+.+++.+++||+|||||+|+.+......| .-.+|
T Consensus 425 ~---~~~~--~k~kL~NI~mQLRKccnHPYLF~g~ePg~py----------------------------ttdeh------ 465 (971)
T KOG0385|consen 425 G---EGKG--EKTKLQNIMMQLRKCCNHPYLFDGAEPGPPY----------------------------TTDEH------ 465 (971)
T ss_pred c---cccc--hhhHHHHHHHHHHHhcCCccccCCCCCCCCC----------------------------CcchH------
Confidence 2 2221 3578899999999999999999641100000 00011
Q ss_pred cCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHH
Q 004295 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAV 729 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~a 729 (763)
-...|+|+..
T Consensus 466 ----------------------------------------------------------------------Lv~nSGKm~v 475 (971)
T KOG0385|consen 466 ----------------------------------------------------------------------LVTNSGKMLV 475 (971)
T ss_pred ----------------------------------------------------------------------HHhcCcceeh
Confidence 1245999999
Q ss_pred HHHHHHHHhcCCCeEEEecCchhHHHHhhhhc
Q 004295 730 LLKELENLCLSGSKSILFSQWTAFLDLLQIPL 761 (763)
Q Consensus 730 Ll~~L~~l~~~~~KvVVFSQfts~LDlIe~~L 761 (763)
|.++|..+.++|+||+||||||+||||+|.+.
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc 507 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYC 507 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 3
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2e-42 Score=400.61 Aligned_cols=474 Identities=29% Similarity=0.380 Sum_probs=327.2
Q ss_pred cCCCccCCCCeEEEEEEEEEeccccccccCcccccCCCCccccccccCChHhHhHHhCccccCCCCCCCcccccccCCCC
Q 004295 193 SAPEVLGIMDTIVLSIRVYINSSMFRKHHATSLKAGSNSAEDSVSLCHPLPNLFRLLGITPFKKAEFTPSDLYTRKRPLD 272 (763)
Q Consensus 193 ~~p~~l~~~~~~~l~l~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~~~l~~lf~~~~l~p~~~~~~~~~~~~~~~~~l~ 272 (763)
.++..+..++.....+.++..++.|..... .+.+.. ...+..+|...++.++..+..+.. ++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--------~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 70 (674)
T KOG1001|consen 6 APPKKLEDRDDSGGIVTVATDSSIIDQVII--------LEQRSQ--GTSLLKLNLIVGTPEWIKSWKLPF-----AGLLN 70 (674)
T ss_pred CCccccCccccccceeeeccchhhhhhccc--------cchhhh--ccchhhhhcccCccccchhhcccc-----cccCC
Confidence 456999999999999999999999865431 111112 455667777777777655544332 23332
Q ss_pred CcCCCCccccccccccccc-ccCCCCCCCCCCCCChhhHHHHHhcCCCC----CCccCCCCCccCCCCchHHHHhHHHHH
Q 004295 273 SKDGCGLHASLLHANKSKV-QSAKVNDVDDVEPISDSDVDNIVGVGYSS----EIEEMEPPSTLKCELRPYQKQALHWMV 347 (763)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~e~~~~~~l~~l~~~~~~~----~l~e~e~p~~l~~~LrpYQkqgl~WMl 347 (763)
..+...........+.... ...+...+.+++.+. ...+++.+... ....+.|...+... |++.+.||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~ 143 (674)
T KOG1001|consen 71 DDDLLISYKYLRTKSRSSNELAKNDIVITTEDTLK---NLPIFKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSL 143 (674)
T ss_pred CcccccchhhhhhccCCccccccccccccchhhcc---cchhhhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHh
Confidence 2111111111111111111 011111112222222 33444333311 11223333334333 777777777
Q ss_pred hcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCchHHHHHHHHHhcccC-
Q 004295 348 QLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQR- 426 (763)
Q Consensus 348 ~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLGKTIq~LaLI~~~~~~- 426 (763)
..+. ..+.++||||||+||||||+++|++++..+..
T Consensus 144 ~~~~-------------------------------------------~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~ 180 (674)
T KOG1001|consen 144 LKSR-------------------------------------------EQQSLRGGILADDMGLGKTVKTIALILKQKLKS 180 (674)
T ss_pred hccc-------------------------------------------ccCccccceEeeccccchHHHHHHHHHhcccCC
Confidence 6533 12358899999999999999999999987643
Q ss_pred ---------CCCcccccCCCCCCCCcccccccccC------cc-ccccCccccch-------------------------
Q 004295 427 ---------GGLSGIQSASQPSDGGIEGYDISDQS------PN-LMKKEPKSLSI------------------------- 465 (763)
Q Consensus 427 ---------~~~l~v~p~sl~~~w~~ei~~~~~~~------~~-~~~~~~~~~~~------------------------- 465 (763)
..++++||++++.+|..++.+..... .. +.+......++
T Consensus 181 ~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~el~~~dVVltTy~il~~~~l~~i~w~Riil 260 (674)
T KOG1001|consen 181 KEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSELNSYDVVLTTYDILKNSPLVKIKWLRIVL 260 (674)
T ss_pred cchhhccccCceeEecchHHHHHHHHHHhccCCccceEEEEecccccccchhcCCceEEeeHHHhhcccccceeEEEEEe
Confidence 25799999999999998883321110 00 01100111111
Q ss_pred ----------------HHHhhhccccccCceEE---------------EcCcchhhhhhhhcCCCcccCC-HHHHHHHHH
Q 004295 466 ----------------DKLIKQTNTLINGGTLI---------------ICPMTLLGQWNKLIQKPYEEGD-ERGLKLVQS 513 (763)
Q Consensus 466 ----------------~~~~~~~~~~~~~~TLI---------------V~P~sll~qW~~~i~~P~e~~~-~~~~~~L~~ 513 (763)
...+...++|+.+||+| +-|+..-..|...+..|++.+. .+++..++.
T Consensus 261 dea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~ 340 (674)
T KOG1001|consen 261 DEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQG 340 (674)
T ss_pred ccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 01234456777888877 4455566677889999999999 799999999
Q ss_pred HHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHh
Q 004295 514 ILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQ 593 (763)
Q Consensus 514 iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRq 593 (763)
+|+++||||||.+... |+|++.|||+++.+.+++++..|+.+|+.+...++..+..+...|.+..+|+.++..++||||
T Consensus 341 ~L~~v~lrrtK~~~~~-gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq 419 (674)
T KOG1001|consen 341 ILKKVMLRRTKEMEVD-GKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQ 419 (674)
T ss_pred HHHHHHhccccccccc-CccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHH
Confidence 9999999999999877 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcc
Q 004295 594 CCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAH 673 (763)
Q Consensus 594 iC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H 673 (763)
+||||.|+......... .+ ...+....++..+..+ ..|.+|.+ .+.++++.|+|
T Consensus 420 ~c~h~~lv~~~~~~~~~--------------------~~---~~~~~~~~~i~~l~~~--~~c~ic~~-~~~~~it~c~h 473 (674)
T KOG1001|consen 420 ACDHSLLVMYEMDSLGD--------------------SG---SAAALIIRLIVDLSVS--HWCHICCD-LDSFFITRCGH 473 (674)
T ss_pred HccchHhhhhhhhcccc--------------------cc---ccchHHHHHHHHHhhc--cccccccc-cccceeecccc
Confidence 99999999753221110 00 0111122255555555 89999999 99999999999
Q ss_pred cccHHHHhhhhcCCCCCCCCCCCccccccccccCCC-CCccccccccccccchhHHHHHHHHHHHhcCCC-eEEEecCch
Q 004295 674 RLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT-GSRFQVDIEKNWVESTKIAVLLKELENLCLSGS-KSILFSQWT 751 (763)
Q Consensus 674 ~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~-~~~~~~~~~~~~~~SsKi~aLl~~L~~l~~~~~-KvVVFSQft 751 (763)
.||.+|+..+++.....+||.||..+...+++.... +..+.. .. ..|+||.++++.|........ |+||||||+
T Consensus 474 ~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~-~~---~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~ 549 (674)
T KOG1001|consen 474 DFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIND-LL---PESSKIYAFLKILQAKEMSEQPKIVIFSQLI 549 (674)
T ss_pred hHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhh-cc---chhhhhHHHHHHHhhccCCCCCceeeehhHH
Confidence 999999999998877779999999999998887533 222221 11 179999999999996554444 999999999
Q ss_pred hHHHHhhhhcc
Q 004295 752 AFLDLLQIPLS 762 (763)
Q Consensus 752 s~LDlIe~~L~ 762 (763)
.||++++..|.
T Consensus 550 ~~l~l~~~~l~ 560 (674)
T KOG1001|consen 550 WGLALVCLRLF 560 (674)
T ss_pred HHHHHhhhhhh
Confidence 99999998764
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-42 Score=386.94 Aligned_cols=320 Identities=30% Similarity=0.456 Sum_probs=222.4
Q ss_pred CCCCccC--CCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCce
Q 004295 326 EPPSTLK--CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (763)
Q Consensus 326 e~p~~l~--~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGI 403 (763)
++|..+. .+|++||+-||+|+.-..+ ....||
T Consensus 389 ~qp~~l~s~i~LkdYQlvGvNWL~Llyk----------------------------------------------~~l~gI 422 (941)
T KOG0389|consen 389 EQPKLLSSGIQLKDYQLVGVNWLLLLYK----------------------------------------------KKLNGI 422 (941)
T ss_pred cCccccCCCCcccchhhhhHHHHHHHHH----------------------------------------------ccccce
Confidence 4666554 5799999999999886533 245689
Q ss_pred eecCCCCchHHHHHHHHHhccc---CCCCcccccCCCCCCCCcccccccccCcccc---------------ccC-ccc--
Q 004295 404 LADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSASQPSDGGIEGYDISDQSPNLM---------------KKE-PKS-- 462 (763)
Q Consensus 404 LADEMGLGKTIq~LaLI~~~~~---~~~~l~v~p~sl~~~w~~ei~~~~~~~~~~~---------------~~~-~~~-- 462 (763)
||||||||||||+||+++.... .+|.|+|+|+|.+.||.+|+.+|.+...... ++. ..+
T Consensus 423 LADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydV 502 (941)
T KOG0389|consen 423 LADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDV 502 (941)
T ss_pred ehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccE
Confidence 9999999999999999887765 4589999999999999999998765431100 000 000
Q ss_pred ----------cchHH-------------------------------HhhhccccccCceEEEcCcchhhhh-------hh
Q 004295 463 ----------LSIDK-------------------------------LIKQTNTLINGGTLIICPMTLLGQW-------NK 494 (763)
Q Consensus 463 ----------~~~~~-------------------------------~~~~~~~~~~~~TLIV~P~sll~qW-------~~ 494 (763)
...++ .+.+..++..+|||+ .++|...| -+
T Consensus 503 llTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPL--QNNL~ELiSLL~FvlP~ 580 (941)
T KOG0389|consen 503 LLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPL--QNNLKELISLLAFVLPK 580 (941)
T ss_pred EEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcc--cccHHHHHHHHHHHhhH
Confidence 00000 234556788999998 77777777 11
Q ss_pred hcCCC-------cc-----cCC-------HHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHH
Q 004295 495 LIQKP-------YE-----EGD-------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKD 555 (763)
Q Consensus 495 ~i~~P-------~e-----~~~-------~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~ 555 (763)
.|..- |. .++ ...+.+.++++.||+|||.|++|..+ ||||+..|.+|+|++.|+.
T Consensus 581 vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~------LPpK~~~Ie~c~mse~Q~~ 654 (941)
T KOG0389|consen 581 VFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ------LPPKIQRIEYCEMSEKQKQ 654 (941)
T ss_pred hhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------cCCccceeEeeecchHHHH
Confidence 11111 11 122 23577888999999999999999988 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCC
Q 004295 556 FYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDV 635 (763)
Q Consensus 556 lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 635 (763)
+|+.+.+............ ....+ -..||+||+++|||.|++.... .+.+..++++.+...... .
T Consensus 655 ~Y~~~~~~~~~~~~~~~~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~---de~L~~mak~il~e~ay~-------~ 719 (941)
T KOG0389|consen 655 LYDELIELYDVKLNEVSKN-SELKS----GNVLMQLRKAANHPLLFRSIYT---DEKLRKMAKRILNEPAYK-------K 719 (941)
T ss_pred HHHHHHHHHhhhccccccc-ccccc----chHHHHHHHHhcChhHHHHhcc---HHHHHHHHHHHhCchhhh-------h
Confidence 9999988764333221111 11111 4579999999999999987543 345777777776554331 1
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCcccc
Q 004295 636 PSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQV 715 (763)
Q Consensus 636 ~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~ 715 (763)
.+..|+-+-++.+.+.+ .|..|..- +....+++
T Consensus 720 ~n~qyIfEDm~~msDfe-------------------lHqLc~~f----------------------------~~~~~f~L 752 (941)
T KOG0389|consen 720 ANEQYIFEDMEVMSDFE-------------------LHQLCCQF----------------------------RHLSKFQL 752 (941)
T ss_pred cCHHHHHHHHHhhhHHH-------------------HHHHHHhc----------------------------CCCccccc
Confidence 23334433333332222 36666321 01122223
Q ss_pred ccccccccchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 716 DIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 716 ~~~~~~~~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
. .+.|..|+|+.+|-.+|.+++++|+|||||||||+||||+|..|+
T Consensus 753 ~-d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~ 798 (941)
T KOG0389|consen 753 K-DDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLD 798 (941)
T ss_pred C-CchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHH
Confidence 2 346899999999999999999999999999999999999999885
No 5
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.8e-41 Score=375.69 Aligned_cols=274 Identities=27% Similarity=0.399 Sum_probs=211.7
Q ss_pred CCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCcee
Q 004295 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (763)
Q Consensus 325 ~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGIL 404 (763)
+..|..+...|+|||++||+||+.... ...||||
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~----------------------------------------------q~~GGIL 229 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYC----------------------------------------------QRAGGIL 229 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHh----------------------------------------------ccCCCee
Confidence 567888899999999999999987643 3569999
Q ss_pred ecCCCCchHHHHHHHHHhcccC----CCCcccccCCCCCCCCccccccccc-----------------------------
Q 004295 405 ADAMGLGKTVMTIALLLTHSQR----GGLSGIQSASQPSDGGIEGYDISDQ----------------------------- 451 (763)
Q Consensus 405 ADEMGLGKTIq~LaLI~~~~~~----~~~l~v~p~sl~~~w~~ei~~~~~~----------------------------- 451 (763)
|||||||||||+||++.+.... ++.++|||++++.+|..|+..|...
T Consensus 230 gDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~ 309 (923)
T KOG0387|consen 230 GDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLI 309 (923)
T ss_pred cccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhhe
Confidence 9999999999999998776554 5899999999999999998775332
Q ss_pred ------------------------------------CccccccCccccchHHHhhhccccccCceEEEcCcchhhhh---
Q 004295 452 ------------------------------------SPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--- 492 (763)
Q Consensus 452 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW--- 492 (763)
+|.+++..++.+-.-+.+++..++..+|||| .++|-..|
T Consensus 310 r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPi--QNnL~ELwsLf 387 (923)
T KOG0387|consen 310 RKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPI--QNNLTELWSLF 387 (923)
T ss_pred eeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccc--cchHHHHHHHh
Confidence 2222222222222222355667788889998 55666666
Q ss_pred --------------hhhcCCCcccCC------------HHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEE
Q 004295 493 --------------NKLIQKPYEEGD------------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIY 546 (763)
Q Consensus 493 --------------~~~i~~P~e~~~------------~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~ 546 (763)
+.+|..|+..|. .++.-.|+.+++|++|||+|.+|.. +.||.|.+.|++
T Consensus 388 DFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-----~~Lp~K~E~Vlf 462 (923)
T KOG0387|consen 388 DFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-----LKLPKKEEIVLF 462 (923)
T ss_pred hhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-----ccCCCccceEEE
Confidence 777888887653 2456789999999999999999975 459999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCC
Q 004295 547 CELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSN 626 (763)
Q Consensus 547 v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~ 626 (763)
|.||+.||.+|.++++... +...+. ....+|..|.-||++||||.|+...... .
T Consensus 463 C~LT~~QR~~Y~~fl~s~~--v~~i~n------g~~~~l~Gi~iLrkICnHPdll~~~~~~------------------~ 516 (923)
T KOG0387|consen 463 CRLTKLQRRLYQRFLNSSE--VNKILN------GKRNCLSGIDILRKICNHPDLLDRRDED------------------E 516 (923)
T ss_pred EeccHHHHHHHHHHhhhHH--HHHHHc------CCccceechHHHHhhcCCcccccCcccc------------------c
Confidence 9999999999999988653 333332 2346788999999999999999743100 0
Q ss_pred CCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 627 ALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
.+
T Consensus 517 -~~----------------------------------------------------------------------------- 518 (923)
T KOG0387|consen 517 -KQ----------------------------------------------------------------------------- 518 (923)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCccccccccccccchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 707 APTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 707 ~~~~~~~~~~~~~~~~~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
..+..+++..|+|+.+|.++|..|+++|+||++|||-..||||||..|.
T Consensus 519 -------~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~ 567 (923)
T KOG0387|consen 519 -------GPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLR 567 (923)
T ss_pred -------CCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHH
Confidence 0011134577999999999999999999999999999999999999886
No 6
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-40 Score=365.74 Aligned_cols=328 Identities=31% Similarity=0.442 Sum_probs=226.3
Q ss_pred cCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCce
Q 004295 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (763)
Q Consensus 324 e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGI 403 (763)
-+++|.++...|.|||+.|+.||+.||. |...|||
T Consensus 315 lte~P~g~~v~LmpHQkaal~Wl~wRE~---------------------------------------------q~~~GGI 349 (901)
T KOG4439|consen 315 LTETPDGLKVELMPHQKAALRWLLWRES---------------------------------------------QPPSGGI 349 (901)
T ss_pred ccCCCCcceeecchhhhhhhhhhccccc---------------------------------------------CCCCCcc
Confidence 4789999999999999999999999987 2367999
Q ss_pred eecCCCCchHHHHHHHHHhcccC-----------CCCcccccCCCCCCCCcccccc------------------------
Q 004295 404 LADAMGLGKTVMTIALLLTHSQR-----------GGLSGIQSASQPSDGGIEGYDI------------------------ 448 (763)
Q Consensus 404 LADEMGLGKTIq~LaLI~~~~~~-----------~~~l~v~p~sl~~~w~~ei~~~------------------------ 448 (763)
||||||||||++|||||++.+.. ..+|++||.|++++|..|+.+-
T Consensus 350 LaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L 429 (901)
T KOG4439|consen 350 LADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKEL 429 (901)
T ss_pred cccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHH
Confidence 99999999999999999876531 1489999999999999987541
Q ss_pred ---------------------------------------cccCccccccCccccchHHHhhhccccccCceEEE------
Q 004295 449 ---------------------------------------SDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLII------ 483 (763)
Q Consensus 449 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV------ 483 (763)
++++|..++..+......-.+....+|+.+||+|-
T Consensus 430 ~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~Dv 509 (901)
T KOG4439|consen 430 RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDV 509 (901)
T ss_pred hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHH
Confidence 11112222221111111113455678889999882
Q ss_pred ---------cCcchhhhhhhhcCCCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHH
Q 004295 484 ---------CPMTLLGQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEK 554 (763)
Q Consensus 484 ---------~P~sll~qW~~~i~~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er 554 (763)
-|+.-+.+|++.|..+ ...+.++|.-+.+++||||||+.... +++++.||++..+++.++|+..|.
T Consensus 510 ysLlrFLr~~pF~D~~~Wke~i~~~----s~~g~~rlnll~K~LmLRRTKdQl~a-~~klv~Lp~k~i~l~~leLs~~E~ 584 (901)
T KOG4439|consen 510 YSLLRFLRCPPFGDLKQWKENIDNM----SKGGANRLNLLTKSLMLRRTKDQLQA-NGKLVNLPEKNIELHELELSGDEA 584 (901)
T ss_pred HHHHHHhcCCCcchHHHHHHhccCc----cccchhhhhhhhhhHHhhhhHHhhcc-ccccccCcccceEEEEEeecchHH
Confidence 3455566777776544 33457888999999999999998877 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh------------------------------------cccccchHHHHHHHHHHHhhccCc
Q 004295 555 DFYEALFKRSKVKFDQFVEQ------------------------------------GRILHNYASILELLLRLRQCCDHP 598 (763)
Q Consensus 555 ~lY~~i~~~~~~~~~~~~~~------------------------------------g~~~~~~~~il~~LlrLRqiC~HP 598 (763)
..|+-+...++.-+.+++.+ |.......+||.+|+||||+||||
T Consensus 585 ~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~ 664 (901)
T KOG4439|consen 585 KVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHF 664 (901)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCc
Confidence 99999999999888765432 112223467999999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHH
Q 004295 599 FLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRE 678 (763)
Q Consensus 599 ~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~ 678 (763)
.++...-+..++. ..+... +. ....-...+.++.+... |.|....|.
T Consensus 665 ~~~k~~ld~~~~~---------~~g~~~-------sd-e~~~e~~~l~el~k~~~---------------T~~~~D~~e- 711 (901)
T KOG4439|consen 665 GLLKAALDPEEFQ---------MNGGDD-------SD-EEQLEEDNLAELEKNDE---------------TDCSDDNCE- 711 (901)
T ss_pred chhccccCHHHhh---------hcCcch-------hh-hhhhhhhHHHhhhhccc---------------ccccccccc-
Confidence 8887543322211 001100 00 00111222333332222 222222221
Q ss_pred HHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHHh-cCCCeEEEecCchhHHHHh
Q 004295 679 CLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLC-LSGSKSILFSQWTAFLDLL 757 (763)
Q Consensus 679 Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L~~l~-~~~~KvVVFSQfts~LDlI 757 (763)
++ | ..+..........|+||..++..|+++. ...+|+||.||||++|+++
T Consensus 712 ------------------------d~---p--~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv 762 (901)
T KOG4439|consen 712 ------------------------DL---P--TAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIV 762 (901)
T ss_pred ------------------------cc---c--ccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHH
Confidence 00 0 0011112233467999999999999984 4499999999999999999
Q ss_pred hhhccC
Q 004295 758 QIPLSR 763 (763)
Q Consensus 758 e~~L~r 763 (763)
+..|++
T Consensus 763 ~~hi~~ 768 (901)
T KOG4439|consen 763 RKHIQK 768 (901)
T ss_pred HHHHhh
Confidence 988753
No 7
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.3e-38 Score=366.21 Aligned_cols=240 Identities=27% Similarity=0.422 Sum_probs=196.0
Q ss_pred HHHHhcCCCCCCccCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccc
Q 004295 311 DNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATI 390 (763)
Q Consensus 311 ~~l~~~~~~~~l~e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~ 390 (763)
+.|-++.+.+.+|++..|-.+..+||.||.+||+|+.-.-+
T Consensus 952 kFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnk--------------------------------------- 992 (1549)
T KOG0392|consen 952 KFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNK--------------------------------------- 992 (1549)
T ss_pred HHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHH---------------------------------------
Confidence 33446677889999999999999999999999999975422
Q ss_pred cCCcccccccCceeecCCCCchHHHHHHHHHhcccCC----------CCcccccCCCCCCCCccccc-------------
Q 004295 391 EFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQRG----------GLSGIQSASQPSDGGIEGYD------------- 447 (763)
Q Consensus 391 ~~P~~~~~~~GGILADEMGLGKTIq~LaLI~~~~~~~----------~~l~v~p~sl~~~w~~ei~~------------- 447 (763)
...-||||||||||||+|+|+.|++..... |.++|||.++..||..|+.+
T Consensus 993 -------y~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~ 1065 (1549)
T KOG0392|consen 993 -------YKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGP 1065 (1549)
T ss_pred -------hcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHhcchhhhhhhcCC
Confidence 145699999999999999999998654432 68999999999999999765
Q ss_pred ---------------------------------------ccccCccccccCccccchHHHhhhccccccCceEEEcCcch
Q 004295 448 ---------------------------------------ISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL 488 (763)
Q Consensus 448 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sl 488 (763)
+++++|..++.-++++.+.+.+....++..+|||| .++.
T Consensus 1066 p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPI--QNnv 1143 (1549)
T KOG0392|consen 1066 PAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPI--QNNV 1143 (1549)
T ss_pred hHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCc--ccCH
Confidence 35555666666666666777778888999999999 7777
Q ss_pred hhhh-----------------hhhcCCCcccC------------CHHHHHHHHHHHhhhheeecccccCcCCCccccCCC
Q 004295 489 LGQW-----------------NKLIQKPYEEG------------DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539 (763)
Q Consensus 489 l~qW-----------------~~~i~~P~e~~------------~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPp 539 (763)
+.-| ...|.+|+-.. ...+++.|+..+=||||||+|.+|..| |||
T Consensus 1144 leLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D------LPp 1217 (1549)
T KOG0392|consen 1144 LELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD------LPP 1217 (1549)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh------CCh
Confidence 8877 55677777521 124689999999999999999999998 999
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHhhccCccccccc
Q 004295 540 ADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHN--YASILELLLRLRQCCDHPFLVMSR 604 (763)
Q Consensus 540 k~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~--~~~il~~LlrLRqiC~HP~Lv~~~ 604 (763)
|.++.+||+||+.|+++|+.+..+++.........|..... .++||+.|..||+.||||.|+...
T Consensus 1218 KIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~ 1284 (1549)
T KOG0392|consen 1218 KIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP 1284 (1549)
T ss_pred hhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC
Confidence 99999999999999999999999877666544444333222 789999999999999999999864
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.1e-37 Score=374.33 Aligned_cols=273 Identities=27% Similarity=0.437 Sum_probs=201.9
Q ss_pred CCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCcee
Q 004295 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (763)
Q Consensus 325 ~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGIL 404 (763)
..+|..+..+|||||++||+||+.... .+.||||
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~----------------------------------------------~g~gGIL 193 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYE----------------------------------------------NGINGIL 193 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHh----------------------------------------------cCCCEEE
Confidence 357888889999999999999987522 2568999
Q ss_pred ecCCCCchHHHHHHHHHhccc----CCCCcccccCCCCCCCCcccccccccC----------------------------
Q 004295 405 ADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYDISDQS---------------------------- 452 (763)
Q Consensus 405 ADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~sl~~~w~~ei~~~~~~~---------------------------- 452 (763)
|||||||||+|+||++..... .++.|+|||.+++.+|..|+.+|.+..
T Consensus 194 ADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVv 273 (1033)
T PLN03142 194 ADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVC 273 (1033)
T ss_pred EeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcc
Confidence 999999999999999876532 357899999999999999987764322
Q ss_pred ---------------------------ccccccCccccchHHHhhhccccccCceEEEcCcchhhhh-------------
Q 004295 453 ---------------------------PNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW------------- 492 (763)
Q Consensus 453 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW------------- 492 (763)
|..++..+........++...+++.+|||| ++++...|
T Consensus 274 ITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPl--qNnl~ELwsLL~FL~P~~f~s 351 (1033)
T PLN03142 274 VTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPL--QNNLHELWALLNFLLPEIFSS 351 (1033)
T ss_pred eecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCC--CCCHHHHHHHHhcCCCCcCCC
Confidence 111111111111111234556788999998 55555555
Q ss_pred ----hhhcCCCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHH
Q 004295 493 ----NKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKF 568 (763)
Q Consensus 493 ----~~~i~~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~ 568 (763)
..+|..+-..+....+..|+.+|+|+||||+|.++..+ ||||.+.+++|.||+.|+.+|+.++......+
T Consensus 352 ~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~------LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l 425 (1033)
T PLN03142 352 AETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG------LPPKKETILKVGMSQMQKQYYKALLQKDLDVV 425 (1033)
T ss_pred HHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh------CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 33344433344567788999999999999999999776 99999999999999999999999988764443
Q ss_pred HHHhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHH
Q 004295 569 DQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEEL 648 (763)
Q Consensus 569 ~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 648 (763)
+. + .....++..+++||++||||+|+...... +
T Consensus 426 ~~----g---~~~~~LlnilmqLRk~cnHP~L~~~~ep~----------------------------~------------ 458 (1033)
T PLN03142 426 NA----G---GERKRLLNIAMQLRKCCNHPYLFQGAEPG----------------------------P------------ 458 (1033)
T ss_pred hc----c---ccHHHHHHHHHHHHHHhCCHHhhhccccc----------------------------C------------
Confidence 22 2 23456889999999999999998531000 0
Q ss_pred hcCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHH
Q 004295 649 QKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIA 728 (763)
Q Consensus 649 ~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~ 728 (763)
+.. .. ......|+|+.
T Consensus 459 -----------------~~~-~~----------------------------------------------e~lie~SgKl~ 474 (1033)
T PLN03142 459 -----------------PYT-TG----------------------------------------------EHLVENSGKMV 474 (1033)
T ss_pred -----------------ccc-ch----------------------------------------------hHHhhhhhHHH
Confidence 000 00 00013599999
Q ss_pred HHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 729 VLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 729 aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.|.++|..+...|+||||||||+.|||+|+.+|.
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~ 508 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM 508 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH
Confidence 9999999999889999999999999999998874
No 9
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.4e-38 Score=365.77 Aligned_cols=275 Identities=29% Similarity=0.472 Sum_probs=199.7
Q ss_pred CCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCch
Q 004295 333 CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGK 412 (763)
Q Consensus 333 ~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLGK 412 (763)
.+||.||.+||+||+.. |. ....|||||||||||
T Consensus 369 ~~LRdyQLeGlNWl~~~----------------W~------------------------------~~~n~ILADEmgLgk 402 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYS----------------WY------------------------------KRNNCILADEMGLGK 402 (1373)
T ss_pred chhhhhhcccchhHHHH----------------HH------------------------------hcccceehhhcCCCc
Confidence 59999999999999975 51 133699999999999
Q ss_pred HHHHHHHHHh----cccCCCCcccccCCCCCCCCccccccccc-------------------------------------
Q 004295 413 TVMTIALLLT----HSQRGGLSGIQSASQPSDGGIEGYDISDQ------------------------------------- 451 (763)
Q Consensus 413 TIq~LaLI~~----~~~~~~~l~v~p~sl~~~w~~ei~~~~~~------------------------------------- 451 (763)
|||+++++.. +.-.+|.++|+|+|.+.+|..++..|.+-
T Consensus 403 tvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltT 482 (1373)
T KOG0384|consen 403 TVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTT 482 (1373)
T ss_pred chHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehh
Confidence 9999998754 33467999999999999999998776421
Q ss_pred -----------------------CccccccCccccchHHHhhhccccccCceEEEcCcchhhhh-------------hhh
Q 004295 452 -----------------------SPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW-------------NKL 495 (763)
Q Consensus 452 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW-------------~~~ 495 (763)
+|+.++....++..-...+...++..+|||. .+++-..| ...
T Consensus 483 ye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPl--QNsikEL~sLl~Fl~P~kf~~~~~ 560 (1373)
T KOG0384|consen 483 YEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPL--QNSLKELWSLLHFLMPGKFDSWDE 560 (1373)
T ss_pred hHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCc--cccHHHHHHHhcccCCCCCCcHHH
Confidence 1111111111111111233445667788888 55555555 222
Q ss_pred cCCCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004295 496 IQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQG 575 (763)
Q Consensus 496 i~~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g 575 (763)
|..-+.......+..|+.+|+|+||||.|.+|.+. ||||.+.|+.|+||..|+++|..|+.+-...+. +|
T Consensus 561 f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks------lp~k~E~IlrVels~lQk~yYk~ILtkN~~~Lt----KG 630 (1373)
T KOG0384|consen 561 FLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS------LPPKEETILRVELSDLQKQYYKAILTKNFSALT----KG 630 (1373)
T ss_pred HHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC------CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHh----cc
Confidence 22223445567899999999999999999999988 999999999999999999999999998655543 34
Q ss_pred ccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCC
Q 004295 576 RILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGE 655 (763)
Q Consensus 576 ~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~e 655 (763)
....+ .++|+.++.||+|||||+|+.+... .+...|.. . . .++++..
T Consensus 631 ~~g~~-~~lLNimmELkKccNHpyLi~gaee--------~~~~~~~~-~-----------~----~d~~L~~-------- 677 (1373)
T KOG0384|consen 631 AKGST-PSLLNIMMELKKCCNHPYLIKGAEE--------KILGDFRD-K-----------M----RDEALQA-------- 677 (1373)
T ss_pred CCCCC-chHHHHHHHHHHhcCCccccCcHHH--------HHHHhhhh-c-----------c----hHHHHHH--------
Confidence 33333 6899999999999999999975210 00000000 0 0 0011111
Q ss_pred CCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHH
Q 004295 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELE 735 (763)
Q Consensus 656 C~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L~ 735 (763)
-..+|+|+..|.++|.
T Consensus 678 ----------------------------------------------------------------lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 678 ----------------------------------------------------------------LIQSSGKLVLLDKLLP 693 (1373)
T ss_pred ----------------------------------------------------------------HHHhcCcEEeHHHHHH
Confidence 1257999999999999
Q ss_pred HHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 736 NLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 736 ~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
+|++.|||||||||++.||||++.+|.
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~ 720 (1373)
T KOG0384|consen 694 RLKEGGHRVLIFSQMVRMLDILAEYLS 720 (1373)
T ss_pred HHhcCCceEEEhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=350.94 Aligned_cols=220 Identities=28% Similarity=0.478 Sum_probs=170.3
Q ss_pred CCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCcee
Q 004295 325 MEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGIL 404 (763)
Q Consensus 325 ~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGIL 404 (763)
...|.-|...||.||+.||.||..+-. .-..|||
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYe----------------------------------------------knlNGIL 639 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYE----------------------------------------------KNLNGIL 639 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHH----------------------------------------------hccccee
Confidence 345677889999999999999987632 2347999
Q ss_pred ecCCCCchHHHHHHHHHhcccC----CCCcccccCCCCCCCCcccccccccCcccc------------ccCcc-------
Q 004295 405 ADAMGLGKTVMTIALLLTHSQR----GGLSGIQSASQPSDGGIEGYDISDQSPNLM------------KKEPK------- 461 (763)
Q Consensus 405 ADEMGLGKTIq~LaLI~~~~~~----~~~l~v~p~sl~~~w~~ei~~~~~~~~~~~------------~~~~~------- 461 (763)
|||||||||||+|||+++.-.. ++.|+|+|++.+.||.-|+.+|....+-.. +...+
T Consensus 640 ADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVC 719 (1958)
T KOG0391|consen 640 ADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVC 719 (1958)
T ss_pred hhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEe
Confidence 9999999999999998776543 478999999999999999988754431100 00000
Q ss_pred --------------------ccchHH----------------HhhhccccccCceEEEcCcchhhhh-------------
Q 004295 462 --------------------SLSIDK----------------LIKQTNTLINGGTLIICPMTLLGQW------------- 492 (763)
Q Consensus 462 --------------------~~~~~~----------------~~~~~~~~~~~~TLIV~P~sll~qW------------- 492 (763)
+.-.|. ...+.+++.++||++ .++|+..|
T Consensus 720 ItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPL--qNslmELWSLmhFLmP~~f~s 797 (1958)
T KOG0391|consen 720 ITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPL--QNSLMELWSLMHFLMPQTFAS 797 (1958)
T ss_pred ehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCch--hhHHHHHHHHHHHhhchhhhh
Confidence 000010 124457788899998 77888888
Q ss_pred ----hhhcCCCccc----C---CHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHH
Q 004295 493 ----NKLIQKPYEE----G---DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALF 561 (763)
Q Consensus 493 ----~~~i~~P~e~----~---~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~ 561 (763)
+.+|.+|+.. + +.+-+.+|+.+|+||+|||+|.+|.++ ||.|.++|++|.||..||.+||.++
T Consensus 798 hd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ------lpkKyEHvv~CrLSkRQR~LYDDfm 871 (1958)
T KOG0391|consen 798 HDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ------LPKKYEHVVKCRLSKRQRALYDDFM 871 (1958)
T ss_pred hhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh------cchhhhhheeeehhhhHHHHHHHHh
Confidence 6777777642 2 246789999999999999999999998 9999999999999999999999998
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCccccccc
Q 004295 562 KRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSR 604 (763)
Q Consensus 562 ~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~ 604 (763)
.+...+ +.++ ..++++|++.||+||++||||-|+..+
T Consensus 872 sq~~TK--etLk----SGhfmsVlnilmqLrKvCNHPnLfEpR 908 (1958)
T KOG0391|consen 872 SQPGTK--ETLK----SGHFMSVLNILMQLRKVCNHPNLFEPR 908 (1958)
T ss_pred hccchh--hHhh----cCchhHHHHHHHHHHHHcCCCCcCCCC
Confidence 765333 2233 346899999999999999999998643
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.2e-36 Score=344.59 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=215.4
Q ss_pred HHHHhcCCCCCCccCCCCCcc-CCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCccc
Q 004295 311 DNIVGVGYSSEIEEMEPPSTL-KCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEAT 389 (763)
Q Consensus 311 ~~l~~~~~~~~l~e~e~p~~l-~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s 389 (763)
..+|..+.....-..++|..+ ..+|++||..||.||... |.|.
T Consensus 370 ~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSL------------------------------yNNn------ 413 (1157)
T KOG0386|consen 370 GSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSL------------------------------YNNN------ 413 (1157)
T ss_pred hhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhc------------------------------cCCC------
Confidence 456777766555556777654 579999999999999975 3333
Q ss_pred ccCCcccccccCceeecCCCCchHHHHHHHHHhccc----CCCCcccccCCCCCCCCcccccccccCccccc--------
Q 004295 390 IEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYDISDQSPNLMK-------- 457 (763)
Q Consensus 390 ~~~P~~~~~~~GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~sl~~~w~~ei~~~~~~~~~~~~-------- 457 (763)
..||||||||||||||+||||++... .+|.++++|++.+.||..|+..|.+.......
T Consensus 414 ----------LNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~ 483 (1157)
T KOG0386|consen 414 ----------LNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRS 483 (1157)
T ss_pred ----------cccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHh
Confidence 36999999999999999999988665 46899999999999999999887655432211
Q ss_pred ----------------------------------------------cCccccchHH-HhhhccccccCceEEEcCcchhh
Q 004295 458 ----------------------------------------------KEPKSLSIDK-LIKQTNTLINGGTLIICPMTLLG 490 (763)
Q Consensus 458 ----------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~TLIV~P~sll~ 490 (763)
...++..... .-...+++..+||++ .++|-+
T Consensus 484 ~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPL--QN~LpE 561 (1157)
T KOG0386|consen 484 GLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPL--QNNLPE 561 (1157)
T ss_pred hHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChh--hhccHH
Confidence 1111000000 112335677888888 555666
Q ss_pred hh-----------------hhhcCCCcccCC----------HHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEE
Q 004295 491 QW-----------------NKLIQKPYEEGD----------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQ 543 (763)
Q Consensus 491 qW-----------------~~~i~~P~e~~~----------~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~ 543 (763)
.| ..+|..||..-. .-.+.+|+.+|+||+|||.|++|..+ ||.|++.
T Consensus 562 LWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~------LPdKve~ 635 (1157)
T KOG0386|consen 562 LWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE------LPDKVED 635 (1157)
T ss_pred HHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh------CchhhhH
Confidence 66 667888987432 12478999999999999999999988 9999999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcC
Q 004295 544 VIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKG 623 (763)
Q Consensus 544 vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~ 623 (763)
|+.|.+|..|+.+|..+.+.-.--.+ .....+.+..++..++.||++||||+|+.+.++.
T Consensus 636 viKC~mSalQq~lY~~m~~~g~l~~d----~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~---------------- 695 (1157)
T KOG0386|consen 636 VIKCDMSALQQSLYKQMQNKGQLLKD----TAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS---------------- 695 (1157)
T ss_pred hhheehhhhhHhhhHHHHhCCCCCcC----chhccccchhhhhHhHHHHHhcCCchhhhhhccc----------------
Confidence 99999999999999998654211111 1123455778999999999999999999532100
Q ss_pred CCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 624 SSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
|.-| ..+ .
T Consensus 696 --------------------------------~~~~------------------------------------~~~---~- 703 (1157)
T KOG0386|consen 696 --------------------------------YTLH------------------------------------YDI---K- 703 (1157)
T ss_pred --------------------------------cccc------------------------------------cCh---h-
Confidence 0000 000 1
Q ss_pred cccCCCCCccccccccccccchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 704 LITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 704 l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.-|..|+|+..|..+|.+|++.||+|+.|+|+|+++||+|.+|.
T Consensus 704 ---------------dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~ 747 (1157)
T KOG0386|consen 704 ---------------DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQ 747 (1157)
T ss_pred ---------------HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 12456999999999999999999999999999999999999884
No 12
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1e-34 Score=320.16 Aligned_cols=211 Identities=31% Similarity=0.469 Sum_probs=163.4
Q ss_pred cCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCce
Q 004295 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (763)
Q Consensus 324 e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGI 403 (763)
.+++|.-|+++|+.||..||+|+...-. .+..||
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYd----------------------------------------------qGiNGI 590 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYD----------------------------------------------QGINGI 590 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHH----------------------------------------------ccccce
Confidence 5788999999999999999999987522 366899
Q ss_pred eecCCCCchHHHHHHHHHhccc----CCCCcccccCCCCCCCCcccccccccCccccc---------------------c
Q 004295 404 LADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSASQPSDGGIEGYDISDQSPNLMK---------------------K 458 (763)
Q Consensus 404 LADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~sl~~~w~~ei~~~~~~~~~~~~---------------------~ 458 (763)
||||||||||+|.||++++... -+|.++|+|+|.+.||..||.++++......- +
T Consensus 591 LADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~r 670 (1185)
T KOG0388|consen 591 LADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRR 670 (1185)
T ss_pred ehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhcc
Confidence 9999999999999999876554 35899999999999999999886555322110 0
Q ss_pred Ccccc----ch--------------------HH----------------HhhhccccccCceEEEcCcchhhhh------
Q 004295 459 EPKSL----SI--------------------DK----------------LIKQTNTLINGGTLIICPMTLLGQW------ 492 (763)
Q Consensus 459 ~~~~~----~~--------------------~~----------------~~~~~~~~~~~~TLIV~P~sll~qW------ 492 (763)
.+.+. +| |. ..+.++++..+||+|... .-..|
T Consensus 671 na~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNs--MqELWALLHFI 748 (1185)
T KOG0388|consen 671 NAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNS--MQELWALLHFI 748 (1185)
T ss_pred CCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchH--HHHHHHHHHHH
Confidence 00000 00 00 124457788999999443 33344
Q ss_pred -----------hhhcCCCcccC-------CHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHH
Q 004295 493 -----------NKLIQKPYEEG-------DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEK 554 (763)
Q Consensus 493 -----------~~~i~~P~e~~-------~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er 554 (763)
..+|.+-++.. +...+.+|+.||+||||||.|.+|..+ |-.|++..++|+||-.|+
T Consensus 749 MPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE------Lg~Kteidv~CdLs~RQ~ 822 (1185)
T KOG0388|consen 749 MPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE------LGQKTEIDVYCDLSYRQK 822 (1185)
T ss_pred hhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH------hccceEEEEEechhHHHH
Confidence 66777777742 467899999999999999999999887 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccccc
Q 004295 555 DFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMS 603 (763)
Q Consensus 555 ~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~ 603 (763)
.+|+.+..... .+..+.++++||++||||.|+..
T Consensus 823 ~lYq~ik~~iS---------------~~E~~~~vmQlrKVCNHPdLFer 856 (1185)
T KOG0388|consen 823 VLYQEIKRSIS---------------SMEMENLVMQLRKVCNHPDLFER 856 (1185)
T ss_pred HHHHHHHHHhh---------------HHHHHHHHHHHHHhcCChHHHhh
Confidence 99999976642 12334589999999999999864
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.95 E-value=1.5e-29 Score=285.94 Aligned_cols=231 Identities=19% Similarity=0.206 Sum_probs=167.4
Q ss_pred cCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCce
Q 004295 324 EMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGI 403 (763)
Q Consensus 324 e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGI 403 (763)
.++.|.+|..+|+|||..||+|||..-.. .+. .- ....+.|||
T Consensus 658 ~VqV~rslv~kLKpHQv~GvqFMwd~~~e---------------Slk---------------------r~-~~~~GsGcI 700 (1567)
T KOG1015|consen 658 LVQVHRSLVIKLKPHQVDGVQFMWDCCCE---------------SLK---------------------RT-KKSPGSGCI 700 (1567)
T ss_pred hhhccHhHHhhcCcccccchhHHHHHHHH---------------HHH---------------------hh-cCCCCcchH
Confidence 34567788999999999999999865220 000 00 112478999
Q ss_pred eecCCCCchHHHHHHHHHhcccC-----CCCcccccCCCCCCCCcccccccccCcccc-cc-------------------
Q 004295 404 LADAMGLGKTVMTIALLLTHSQR-----GGLSGIQSASQPSDGGIEGYDISDQSPNLM-KK------------------- 458 (763)
Q Consensus 404 LADEMGLGKTIq~LaLI~~~~~~-----~~~l~v~p~sl~~~w~~ei~~~~~~~~~~~-~~------------------- 458 (763)
||+-||||||+|+++|+++..-. ...|+|+|+..+.||.+|+.+|........ ..
T Consensus 701 LAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~ 780 (1567)
T KOG1015|consen 701 LAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR 780 (1567)
T ss_pred HHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHH
Confidence 99999999999999998875532 367999999999999999999866421110 00
Q ss_pred -----CccccchHH---------------------------------------------------HhhhccccccCceEE
Q 004295 459 -----EPKSLSIDK---------------------------------------------------LIKQTNTLINGGTLI 482 (763)
Q Consensus 459 -----~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~TLI 482 (763)
.....+|+. .+.++++++++|||+
T Consensus 781 W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPL 860 (1567)
T KOG1015|consen 781 WQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPL 860 (1567)
T ss_pred HHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCch
Confidence 000011111 356678888888887
Q ss_pred EcCcchhhhh-----------------hhhcCCCcccCC------------HHHHHHHHHHHhhhheeecccccCcCCCc
Q 004295 483 ICPMTLLGQW-----------------NKLIQKPYEEGD------------ERGLKLVQSILKPIMLRRTKSSTDREGRP 533 (763)
Q Consensus 483 V~P~sll~qW-----------------~~~i~~P~e~~~------------~~~~~~L~~iL~pi~LRRtK~~v~~~G~p 533 (763)
.++|+... +..|.+||++|. .+..+.|...|+-++-|+.-.-+...
T Consensus 861 --QNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--- 935 (1567)
T KOG1015|consen 861 --QNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--- 935 (1567)
T ss_pred --hhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc---
Confidence 44444433 778999999884 13468899999999999999988888
Q ss_pred cccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCccccc
Q 004295 534 ILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602 (763)
Q Consensus 534 il~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~ 602 (763)
||||+++|+.|.||+.|+.+|.++++. ......-...|.. ....+|.-...|++|.+||+.+.
T Consensus 936 ---LPPK~eyVi~vrltelQ~~LYq~yL~h-~~~~G~d~eg~~g--~~arlf~dfqmlsrIwtHP~~lq 998 (1567)
T KOG1015|consen 936 ---LPPKHEYVIAVRLTELQCKLYQYYLDH-LTGVGNDSEGGRG--AGARLFQDFQMLSRIWTHPWCLQ 998 (1567)
T ss_pred ---CCCceeEEEEEeccHHHHHHHHHHHhh-ccccCCccccccc--hhhhHHHHHHHHHHHhcCCCcee
Confidence 999999999999999999999999882 2111111111111 35689999999999999999876
No 14
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.94 E-value=1.9e-26 Score=266.48 Aligned_cols=217 Identities=25% Similarity=0.351 Sum_probs=157.1
Q ss_pred CCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeec
Q 004295 327 PPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILAD 406 (763)
Q Consensus 327 ~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILAD 406 (763)
+-|.+...|||||++|+.||+..=.+.. .| ....|||+||
T Consensus 231 ~dP~l~~~LrPHQ~EG~~FL~knl~g~~-------------------------------------~~---~~~~GCImAd 270 (776)
T KOG0390|consen 231 IDPLLKKILRPHQREGFEFLYKNLAGLI-------------------------------------RP---KNSGGCIMAD 270 (776)
T ss_pred ecccHhhhcCchHHHHHHHHHhhhhccc-------------------------------------cc---CCCCceEeeC
Confidence 4467889999999999999986533210 00 1356999999
Q ss_pred CCCCchHHHHHHHHHhcccC--------CCCcccccCCCCCCCCccccccccc-C-cc----------------------
Q 004295 407 AMGLGKTVMTIALLLTHSQR--------GGLSGIQSASQPSDGGIEGYDISDQ-S-PN---------------------- 454 (763)
Q Consensus 407 EMGLGKTIq~LaLI~~~~~~--------~~~l~v~p~sl~~~w~~ei~~~~~~-~-~~---------------------- 454 (763)
+||||||+|+|+||.+.... ...++|+|.+++.+|..|+.+|... . +.
T Consensus 271 ~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~ 350 (776)
T KOG0390|consen 271 EPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGY 350 (776)
T ss_pred CCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhh
Confidence 99999999999999887654 3468999999999999999998764 1 00
Q ss_pred -------------------------------------ccccCccccchHHHhhhccccccCceEEEcCcchhhhh-----
Q 004295 455 -------------------------------------LMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW----- 492 (763)
Q Consensus 455 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW----- 492 (763)
.++.....+..-..+++.+++..+|||| .+++...+
T Consensus 351 ~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~--QNdl~EyFnlL~f 428 (776)
T KOG0390|consen 351 KQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPI--QNDLKEYFNLLDF 428 (776)
T ss_pred hheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcc--cccHHHHHHHHhh
Confidence 0000000000011345668888999999 44433333
Q ss_pred ------------hhhcCCCcccCC-----------HHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecC
Q 004295 493 ------------NKLIQKPYEEGD-----------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCEL 549 (763)
Q Consensus 493 ------------~~~i~~P~e~~~-----------~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~L 549 (763)
++.+..|+..+. ...+..|..++..|++|||-+..... ||++.++|+.|.+
T Consensus 429 vrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~------LP~k~e~vv~~n~ 502 (776)
T KOG0390|consen 429 VRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY------LPGKYEYVVFCNP 502 (776)
T ss_pred cChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh------CCCceeEEEEeCC
Confidence 555555554421 12377899999999999999776666 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCccccc
Q 004295 550 TEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602 (763)
Q Consensus 550 S~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~ 602 (763)
++.|+.+|+.+.+.+ .... .+.+ .|..++.|.++|+||.|+.
T Consensus 503 t~~Q~~~~~~l~~~~-~~~~--------~~~~--~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 503 TPIQKELYKKLLDSM-KMRT--------LKGY--ALELITKLKKLCNHPSLLL 544 (776)
T ss_pred cHHHHHHHHHHHHHH-Hhhh--------hhcc--hhhHHHHHHHHhcCHHhhc
Confidence 999999999998875 2211 1111 6889999999999999995
No 15
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.93 E-value=7.3e-27 Score=250.22 Aligned_cols=196 Identities=29% Similarity=0.437 Sum_probs=126.2
Q ss_pred cccCceeecCCCCchHHHHHHHHHhcccC------CCCcccccCCCCCCCCcccccccccC--cc------c------cc
Q 004295 398 MARGGILADAMGLGKTVMTIALLLTHSQR------GGLSGIQSASQPSDGGIEGYDISDQS--PN------L------MK 457 (763)
Q Consensus 398 ~~~GGILADEMGLGKTIq~LaLI~~~~~~------~~~l~v~p~sl~~~w~~ei~~~~~~~--~~------~------~~ 457 (763)
..+|||||||||||||+++|+++...... .++++++|.+++.+|..|+..|.... +. . ..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhcccccccccccccccccccccccccc
Confidence 46799999999999999999999843321 14899999999999999988776320 00 0 00
Q ss_pred cCcc----ccchHH-----------------------------------------HhhhccccccCceEEEcCcch-h--
Q 004295 458 KEPK----SLSIDK-----------------------------------------LIKQTNTLINGGTLIICPMTL-L-- 489 (763)
Q Consensus 458 ~~~~----~~~~~~-----------------------------------------~~~~~~~~~~~~TLIV~P~sl-l-- 489 (763)
.... ..+++. .+....+++.+|||+.....- .
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~ 183 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSL 183 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHH
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccc
Confidence 0000 000000 112345567788887433221 1
Q ss_pred ------------hhhhhhcCCCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHH
Q 004295 490 ------------GQWNKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFY 557 (763)
Q Consensus 490 ------------~qW~~~i~~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY 557 (763)
..|.+.+..+..........+|+.+++++|+||++.++..+ ||++.+.++.|+||+.|+++|
T Consensus 184 l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~------lp~~~~~~~~~~ls~~q~~~Y 257 (299)
T PF00176_consen 184 LRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVEKE------LPPKIEHVINVELSPEQRELY 257 (299)
T ss_dssp HHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGCTT------STCEEEEEEEEGG-HHHHHHH
T ss_pred hheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhccccccc------CCceEEEEEEeCCCHHHHHHH
Confidence 12233332221222346789999999999999999998555 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccc
Q 004295 558 EALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLV 601 (763)
Q Consensus 558 ~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv 601 (763)
+.+.+..+..+.... +...+++..++..+++|||+||||+|+
T Consensus 258 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 258 NELLKEARENLKQSS--RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHGGCCTT-T----TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999888765554433 233466789999999999999999985
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=3.9e-25 Score=270.60 Aligned_cols=221 Identities=37% Similarity=0.538 Sum_probs=156.4
Q ss_pred CccCCCCchHHHHhHHHHHh-cccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecC
Q 004295 329 STLKCELRPYQKQALHWMVQ-LEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADA 407 (763)
Q Consensus 329 ~~l~~~LrpYQkqgl~WMl~-rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADE 407 (763)
..+...|++||.+|+.||.. .. ....|||||||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~----------------------------------------------~~~~~~ilaD~ 366 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLR----------------------------------------------SNLLGGILADD 366 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------hccCCCccccc
Confidence 56778999999999999984 21 13669999999
Q ss_pred CCCchHHHHHHHHHhccc-----CCCCcccccCCCCCCCCcccccccccCcc-cccc---------------Ccc-----
Q 004295 408 MGLGKTVMTIALLLTHSQ-----RGGLSGIQSASQPSDGGIEGYDISDQSPN-LMKK---------------EPK----- 461 (763)
Q Consensus 408 MGLGKTIq~LaLI~~~~~-----~~~~l~v~p~sl~~~w~~ei~~~~~~~~~-~~~~---------------~~~----- 461 (763)
||||||+|+|+++.+... .++.++++|.+++.+|..++..|...... .... ...
T Consensus 367 mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 446 (866)
T COG0553 367 MGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVI 446 (866)
T ss_pred ccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccc
Confidence 999999999999975221 24789999999999999998777554431 0000 000
Q ss_pred -cc----ch--------HH-------------------------------HhhhccccccCceEEEcCcchhhhh-----
Q 004295 462 -SL----SI--------DK-------------------------------LIKQTNTLINGGTLIICPMTLLGQW----- 492 (763)
Q Consensus 462 -~~----~~--------~~-------------------------------~~~~~~~~~~~~TLIV~P~sll~qW----- 492 (763)
+. .+ +. .++...++..+|||| +..+-..|
T Consensus 447 ~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPl--en~l~eL~sl~~~ 524 (866)
T COG0553 447 IFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPL--ENRLGELWSLLQE 524 (866)
T ss_pred eeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChH--hhhHHHHHHHHHH
Confidence 00 00 00 123334567788885 55555555
Q ss_pred --------------hhhcCCCcccCCH--------HHHHHHHHHHhhhheeecccc--cCcCCCccccCCCceEEEEEec
Q 004295 493 --------------NKLIQKPYEEGDE--------RGLKLVQSILKPIMLRRTKSS--TDREGRPILVLPPADMQVIYCE 548 (763)
Q Consensus 493 --------------~~~i~~P~e~~~~--------~~~~~L~~iL~pi~LRRtK~~--v~~~G~pil~LPpk~~~vv~v~ 548 (763)
..+|..|+..... ..+..|+.+++|++|||+|.+ +..+ ||+|.+.+++|+
T Consensus 525 f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~------Lp~k~e~~~~~~ 598 (866)
T COG0553 525 FLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE------LPPKIEKVLECE 598 (866)
T ss_pred HhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh------CChhhhhhhhhc
Confidence 3344444433221 344558899999999999999 5545 999999999999
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHhhhccc--cc--chHHHHHHHHHHHhhccCcccccc
Q 004295 549 LTEAEKDFYEALFK---RSKVKFDQFVEQGRI--LH--NYASILELLLRLRQCCDHPFLVMS 603 (763)
Q Consensus 549 LS~~Er~lY~~i~~---~~~~~~~~~~~~g~~--~~--~~~~il~~LlrLRqiC~HP~Lv~~ 603 (763)
+++.|+.+|+.+.. .....+......+.. .. ....++..+++|||+|+||.++..
T Consensus 599 l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~ 660 (866)
T COG0553 599 LSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDE 660 (866)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccc
Confidence 99999999999999 555555544332210 01 367899999999999999999974
No 17
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.89 E-value=4.5e-24 Score=244.97 Aligned_cols=143 Identities=29% Similarity=0.438 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHH
Q 004295 505 ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASI 584 (763)
Q Consensus 505 ~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~i 584 (763)
....+.++.++.|.||||.|.++..+ .|+|++-++.++|++.|++.|+.++.+-..-+.. ..+....
T Consensus 510 ~~~~~~l~~l~~p~~lrr~k~d~l~~------~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~ 576 (696)
T KOG0383|consen 510 EEQIKKLHLLLCPHMLRRLKLDVLKP------MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSL 576 (696)
T ss_pred HHHHHhhccccCchhhhhhhhhhccC------CCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHH
Confidence 46789999999999999999999877 9999999999999999999999998875444332 2234567
Q ss_pred HHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccc
Q 004295 585 LELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFE 664 (763)
Q Consensus 585 l~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~ 664 (763)
+..++.||++||||+++..... + ..+..|....+
T Consensus 577 ~n~~mel~K~~~hpy~~~~~e~------~---------------------~~~~~~~~~~l------------------- 610 (696)
T KOG0383|consen 577 LNIVMELRKQCNHPYLSPLEEP------L---------------------EENGEYLGSAL------------------- 610 (696)
T ss_pred HHHHHHHHHhhcCcccCccccc------c---------------------ccchHHHHHHH-------------------
Confidence 8999999999999999863100 0 01111111111
Q ss_pred CceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHHhcCCCeE
Q 004295 665 DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKS 744 (763)
Q Consensus 665 ~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L~~l~~~~~Kv 744 (763)
...|+|+..|...++++++.||||
T Consensus 611 --------------------------------------------------------~k~~~k~~~l~~~~~~l~~~ghrv 634 (696)
T KOG0383|consen 611 --------------------------------------------------------IKASGKLTLLLKMLKKLKSSGHRV 634 (696)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHhcchhh
Confidence 134999999999999999999999
Q ss_pred EEecCchhHHHHhhhhcc
Q 004295 745 ILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 745 VVFSQfts~LDlIe~~L~ 762 (763)
+|||||+.+|||+|.+++
T Consensus 635 l~~~q~~~~ldlled~~~ 652 (696)
T KOG0383|consen 635 LIFSQMIHMLDLLEDYLT 652 (696)
T ss_pred HHHHHHHHHHHHhHHHHh
Confidence 999999999999999874
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=5.7e-23 Score=229.04 Aligned_cols=224 Identities=21% Similarity=0.260 Sum_probs=153.5
Q ss_pred CCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecC
Q 004295 328 PSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADA 407 (763)
Q Consensus 328 p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADE 407 (763)
.+.++--|+|||.=|++||...--.. -+.|+ .+.+.|||||+.
T Consensus 248 apqla~v~kPHQiGGiRFlYDN~iES------------l~ryk-------------------------kSsGFGCILAHS 290 (1387)
T KOG1016|consen 248 APQLAHVLKPHQIGGIRFLYDNTIES------------LGRYK-------------------------KSSGFGCILAHS 290 (1387)
T ss_pred hhhhHhhcCccccCcEEEehhhHHHH------------Hhhcc-------------------------ccCCcceeeeec
Confidence 45678889999999999998642100 01111 124789999999
Q ss_pred CCCchHHHHHHHH---HhcccCCCCcccccCCCCCCCCcccccccccCcccccc--------------------------
Q 004295 408 MGLGKTVMTIALL---LTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPNLMKK-------------------------- 458 (763)
Q Consensus 408 MGLGKTIq~LaLI---~~~~~~~~~l~v~p~sl~~~w~~ei~~~~~~~~~~~~~-------------------------- 458 (763)
||||||||+|+++ +.+-....+|++.|...+.||-.|+..|........+.
T Consensus 291 MGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~ 370 (1387)
T KOG1016|consen 291 MGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ 370 (1387)
T ss_pred cccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH
Confidence 9999999999985 33334457899999999999999987765441110000
Q ss_pred ---------------------------------------CccccchH---------------------------------
Q 004295 459 ---------------------------------------EPKSLSID--------------------------------- 466 (763)
Q Consensus 459 ---------------------------------------~~~~~~~~--------------------------------- 466 (763)
..+..+.|
T Consensus 371 Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~ 450 (1387)
T KOG1016|consen 371 WVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNIT 450 (1387)
T ss_pred HhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccch
Confidence 00000000
Q ss_pred -------HHhhhccccccCceEEEcCcchhhhh-----------------hhhcCCCcccCC-----H-------HHHHH
Q 004295 467 -------KLIKQTNTLINGGTLIICPMTLLGQW-----------------NKLIQKPYEEGD-----E-------RGLKL 510 (763)
Q Consensus 467 -------~~~~~~~~~~~~~TLIV~P~sll~qW-----------------~~~i~~P~e~~~-----~-------~~~~~ 510 (763)
+.+.++++++++|.++ .++|+..| -..|.+|+.+|. + -..++
T Consensus 451 A~iS~aLk~IrtrRRiVLTGYPL--QNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHV 528 (1387)
T KOG1016|consen 451 AEISMALKAIRTRRRIVLTGYPL--QNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHV 528 (1387)
T ss_pred HHHHHHHHHhhhceeEEEecccc--ccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHH
Confidence 0234455555555555 57899999 445678888773 1 13578
Q ss_pred HHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHH
Q 004295 511 VQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLR 590 (763)
Q Consensus 511 L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~Llr 590 (763)
|+.+|+.|+-||+..-...- ||.|.++|+.|.+|..||++|+.+.-.+++.+.. .+...- +.|..+.-
T Consensus 529 LhsLl~GFVQRR~HtvLk~~------LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~---~~~~~~---NPLkAF~v 596 (1387)
T KOG1016|consen 529 LHSLLKGFVQRRTHTVLKKI------LPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAA---NNDAVF---NPLKAFSV 596 (1387)
T ss_pred HHHHHHHHHHhcchhhHhhh------cccccceEEEEeHHHHHHHHHHHHHHHHHHhhcc---cccccc---ChHHHHHH
Confidence 99999999999999866544 9999999999999999999999998776655432 222211 34555555
Q ss_pred HHhhccCccccc
Q 004295 591 LRQCCDHPFLVM 602 (763)
Q Consensus 591 LRqiC~HP~Lv~ 602 (763)
-.+|.|||.++.
T Consensus 597 CcKIWNHPDVLY 608 (1387)
T KOG1016|consen 597 CCKIWNHPDVLY 608 (1387)
T ss_pred HHHhcCChHHHH
Confidence 667889999885
No 19
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.76 E-value=6e-19 Score=190.47 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=68.0
Q ss_pred CCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecC
Q 004295 328 PSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADA 407 (763)
Q Consensus 328 p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADE 407 (763)
|+.+...|.|||++||.|-++|- .-.+||||
T Consensus 192 d~kLvs~LlPFQreGv~faL~Rg-------------------------------------------------GR~llADe 222 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALERG-------------------------------------------------GRILLADE 222 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHhcC-------------------------------------------------CeEEEecc
Confidence 34467789999999999999872 23799999
Q ss_pred CCCchHHHHHHHHHhcccCCCCcccccCCCCCCCCcccccccccCcc
Q 004295 408 MGLGKTVMTIALLLTHSQRGGLSGIQSASQPSDGGIEGYDISDQSPN 454 (763)
Q Consensus 408 MGLGKTIq~LaLI~~~~~~~~~l~v~p~sl~~~w~~ei~~~~~~~~~ 454 (763)
||||||||+|+.....+...+.++|||+|+...|..++..|+...+.
T Consensus 223 MGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 223 MGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred cccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999988765543
No 20
>PF08797 HIRAN: HIRAN domain; InterPro: IPR014905 The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes []. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 2L1I_A 3K2Y_C.
Probab=99.58 E-value=2.1e-15 Score=137.88 Aligned_cols=100 Identities=28% Similarity=0.361 Sum_probs=65.9
Q ss_pred EEeeeecEEeecc-----CCC-CCCCCEEEEEeecCCCCCCCCCCCCCcccccccccCCCCeEEEEEcCCCCccccCchh
Q 004295 98 VGWGDVPAMSTSK-----GRK-LRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHE 171 (763)
Q Consensus 98 ig~~~v~~~~t~~-----g~~-l~~g~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivr~~~~~~~eiGrlp~~ 171 (763)
||+|.+.+|+|+. +.. |++||.|.|+|+..++ .++ . +.....+.||++.+|.+||+||++
T Consensus 1 ~G~~~~~v~g~~~~~~~~~~~~l~~g~~v~L~re~~N~-----------~D~--n-Ai~v~~~~~~~~~~~~~iGylp~~ 66 (107)
T PF08797_consen 1 IGSFYFFVAGTRYYDGRAGRGKLKPGDRVVLVREPDNP-----------YDP--N-AIKVYTIDRFSNSRGREIGYLPRE 66 (107)
T ss_dssp --B--EEEE-CCCSTTHHCCTT--TTSEEEEEEETT-T-----------THC--C-CCCEEETT------BGCCCCCHHH
T ss_pred CcEEEEEEEEeecccccccccccCCCCEEEEEEcCCCC-----------CCc--c-cEEEEEeecccccCCCEEEEecHH
Confidence 7999999999999 776 9999999999975531 010 1 223467788888889999999999
Q ss_pred HHHHHHhhhcCCcEEEEEEEccCCC-ccCCCCeEEEEEEEE
Q 004295 172 WSRCLLPLVRDKKVEILGCCKSAPE-VLGIMDTIVLSIRVY 211 (763)
Q Consensus 172 ~a~~l~pLld~~~~~~eg~~~~~p~-~l~~~~~~~l~l~~~ 211 (763)
+|+||+||||.+.+.|+|+|+++|. +++++++|+|+++||
T Consensus 67 ~a~~l~~Lld~~~~~~~~~v~~~~~~~~~~~~~i~l~~~~~ 107 (107)
T PF08797_consen 67 IAKWLSPLLDSGGVKFEGTVVFVPDKRLRIGIEIYLFLKCY 107 (107)
T ss_dssp HHHHHHHHCCT-TEEEEEEEECCCTTT-----EEEEEE---
T ss_pred HHHHHHHHHhCCCcEEEEEEEECCccccccCeEEEEEEECC
Confidence 9999999999999999999999998 999999999999998
No 21
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.50 E-value=6.3e-14 Score=169.48 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=56.3
Q ss_pred ccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCC
Q 004295 330 TLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409 (763)
Q Consensus 330 ~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMG 409 (763)
+....|+|||...+++++.+. ..+.|||||||
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~------------------------------------------------~~R~LLADEvG 179 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRH------------------------------------------------APRVLLADEVG 179 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhcc------------------------------------------------CCCEEEEeCCc
Confidence 356789999999999887652 23579999999
Q ss_pred CchHHHHHHHHHhcc---cCCCCcccccCCCCCCCCccccc
Q 004295 410 LGKTVMTIALLLTHS---QRGGLSGIQSASQPSDGGIEGYD 447 (763)
Q Consensus 410 LGKTIq~LaLI~~~~---~~~~~l~v~p~sl~~~w~~ei~~ 447 (763)
||||||+++++.... ...+++++||.++..+|..|+.+
T Consensus 180 LGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~ 220 (956)
T PRK04914 180 LGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLR 220 (956)
T ss_pred CcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHH
Confidence 999999988875432 23479999999999999888743
No 22
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.42 E-value=6e-14 Score=166.26 Aligned_cols=90 Identities=33% Similarity=0.409 Sum_probs=66.1
Q ss_pred HHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhh-----------hccc-
Q 004295 510 LVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVE-----------QGRI- 577 (763)
Q Consensus 510 ~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~-----------~g~~- 577 (763)
....+++..+.|+.|..+..+ +.|||..+.+.+..+++.|-.+|...+......+..... .+..
T Consensus 591 ~~~dl~~q~l~R~~k~~v~~e----l~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l 666 (1394)
T KOG0298|consen 591 PLLDLFKQLLWRTFKSKVEHE----LGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASL 666 (1394)
T ss_pred hHHHHHHhhhhhhhhHHHHHH----hCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccC
Confidence 456678889999999998876 789999999999999998887777765544333322211 1111
Q ss_pred -ccchHHHHHHHHHHHhhccCcccccc
Q 004295 578 -LHNYASILELLLRLRQCCDHPFLVMS 603 (763)
Q Consensus 578 -~~~~~~il~~LlrLRqiC~HP~Lv~~ 603 (763)
...-+.++..++||||+||||..-.+
T Consensus 667 ~~~~~a~i~~~l~rLRq~Cchplv~~~ 693 (1394)
T KOG0298|consen 667 SPQLLAIILKWLLRLRQACCHPLVGNS 693 (1394)
T ss_pred ChhhHHHHHHHHHHHHHhhcccccccC
Confidence 12346789999999999999988654
No 23
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=2.6e-08 Score=117.68 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCc
Q 004295 332 KCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLG 411 (763)
Q Consensus 332 ~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLG 411 (763)
...|||||++||.||+... ..++|||...||.|
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g-----------------------------------------------r~r~GIIvLPtGaG 285 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG-----------------------------------------------RARSGIIVLPCGAG 285 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC-----------------------------------------------CCCCcEEEeCCCCC
Confidence 5789999999999997421 13579999999999
Q ss_pred hHHHHHHHHHhcccCCCCcccccCCC-CCCCCccccccc
Q 004295 412 KTVMTIALLLTHSQRGGLSGIQSASQ-PSDGGIEGYDIS 449 (763)
Q Consensus 412 KTIq~LaLI~~~~~~~~~l~v~p~sl-~~~w~~ei~~~~ 449 (763)
||+++|+++.... .+++++||.+. +.+|.+++.+|.
T Consensus 286 KTlvai~aa~~l~--k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 286 KSLVGVTAACTVK--KSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred hHHHHHHHHHHhC--CCEEEEeCcHHHHHHHHHHHHHhc
Confidence 9999999887664 46899999875 779999998874
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.77 E-value=4e-09 Score=104.18 Aligned_cols=58 Identities=31% Similarity=0.704 Sum_probs=49.3
Q ss_pred cCCCCCCCcccccccCceecCCcccccHHHHhhhhcC--------------CCCCCCCCCCccccccccccC
Q 004295 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT--------------PTSGLCPVCRKTISRQDLITA 707 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~--------------~~~~~CP~Cr~~i~~~~l~~~ 707 (763)
.++..+|+||.+.+.+|++|+|+|.||..||..++.. .....||.||..++..+++.+
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 3556899999999999999999999999999987642 235789999999999888754
No 25
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.56 E-value=5.1e-08 Score=80.02 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=45.8
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
..||||.+.|.+|++++|||.||++|+..+++. ...||.|+.+++..+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l~ 51 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHEDLI 51 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChhhce
Confidence 469999999999999999999999999999976 67899999999887775
No 26
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.6e-08 Score=95.81 Aligned_cols=55 Identities=35% Similarity=0.858 Sum_probs=45.9
Q ss_pred cCCCCCCCcccccccC--ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 650 KGEQGECPICLEAFED--AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~--~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
+....-||||++.... ++-|.|||+||+.||.+.++. ..+||.||..|+..+++.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHh--CCCCCCcccccchhhhee
Confidence 3445789999997765 445899999999999999876 689999999999887764
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.56 E-value=4.4e-08 Score=73.75 Aligned_cols=40 Identities=53% Similarity=1.289 Sum_probs=32.2
Q ss_pred CCcccccccCceecCCcccccHHHHhhhhcCCCC--CCCCCC
Q 004295 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTS--GLCPVC 695 (763)
Q Consensus 656 C~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~--~~CP~C 695 (763)
||||.+.+.+|+.++|+|.||+.||..+++.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999987644 589987
No 28
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.45 E-value=1.1e-07 Score=74.60 Aligned_cols=46 Identities=46% Similarity=1.012 Sum_probs=40.6
Q ss_pred CCCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+..|.||.+...++++++|+|. ||.+|+..+++ ....||.||++|+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 4689999999999999999999 99999999987 5789999999886
No 29
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.41 E-value=1.4e-07 Score=69.90 Aligned_cols=38 Identities=47% Similarity=1.243 Sum_probs=33.0
Q ss_pred CCcccccccCc-eecCCcccccHHHHhhhhcCCCCCCCCCC
Q 004295 656 CPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (763)
Q Consensus 656 C~IC~~~~~~~-~it~C~H~fC~~Ci~~~~~~~~~~~CP~C 695 (763)
|+||.+.+.+| ++++|||.||++|+..+++. ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999 68999999999999999987 4899987
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.2e-07 Score=97.86 Aligned_cols=53 Identities=30% Similarity=0.777 Sum_probs=46.7
Q ss_pred CCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
....-|.+|++.+.+|.-|+|||.||-.||.++.... ..||.||..+..++++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek--~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK--AECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc--cCCCcccccCCCccee
Confidence 3457899999999999999999999999999998653 4499999999988875
No 31
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.31 E-value=4.8e-07 Score=93.33 Aligned_cols=48 Identities=38% Similarity=0.818 Sum_probs=39.2
Q ss_pred CCCCCCCcccccccC--------ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 651 GEQGECPICLEAFED--------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~--------~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
....+|+||++.+.+ +++++|+|.||.+||..+.+. ...||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 345899999997654 356789999999999998764 678999999765
No 32
>PRK13766 Hef nuclease; Provisional
Probab=98.29 E-value=9.7e-06 Score=99.07 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=35.3
Q ss_pred cchhHHHHHHHHHHHhc--CCCeEEEecCchhHHHHhhhhcc
Q 004295 723 ESTKIAVLLKELENLCL--SGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 723 ~SsKi~aLl~~L~~l~~--~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.+.|+..|.++|+++.. .+.|+|||+++..+.+.|...|+
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~ 386 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLE 386 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 47899999999999763 48999999999999999988873
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.9e-07 Score=100.88 Aligned_cols=55 Identities=40% Similarity=0.893 Sum_probs=49.5
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCC---CCCCCCCCCccccccccccC
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTP---TSGLCPVCRKTISRQDLITA 707 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~---~~~~CP~Cr~~i~~~~l~~~ 707 (763)
...||||+++..-|..|.|||.||-.||..||... .-..||.|+..|...||..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 57999999999999999999999999999999765 35789999999999888765
No 34
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.24 E-value=4.8e-07 Score=67.66 Aligned_cols=40 Identities=55% Similarity=1.239 Sum_probs=36.9
Q ss_pred CCcccccccCce-ecCCcccccHHHHhhhhcCCCCCCCCCC
Q 004295 656 CPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (763)
Q Consensus 656 C~IC~~~~~~~~-it~C~H~fC~~Ci~~~~~~~~~~~CP~C 695 (763)
|+||.+.+.++. +++|+|.||.+|+..+++......||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 9999999999999999987677889987
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1.3e-06 Score=96.48 Aligned_cols=51 Identities=31% Similarity=0.734 Sum_probs=44.4
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
....|+||.+.+.+|++++|+|.||..|+..++.. ...||.|+..+....+
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQESKL 75 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccccC
Confidence 34799999999999999999999999999999875 4589999998876544
No 36
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.8e-07 Score=89.59 Aligned_cols=58 Identities=34% Similarity=0.719 Sum_probs=50.6
Q ss_pred cCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCC-CCCCCCCCccccccccccC
Q 004295 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLITA 707 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~-~~~CP~Cr~~i~~~~l~~~ 707 (763)
++...+|-||++...+|++|.|+|+||=.||-.+++... ...||+|+..++...++-+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 466789999999999999999999999999999987654 5568999999998887654
No 37
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.17 E-value=5.5e-07 Score=68.52 Aligned_cols=41 Identities=51% Similarity=1.093 Sum_probs=33.6
Q ss_pred CCCCcccccc---cCceecCCcccccHHHHhhhhcCCCCCCCCCCC
Q 004295 654 GECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCR 696 (763)
Q Consensus 654 ~eC~IC~~~~---~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr 696 (763)
.+|+||++.+ +..+.++|+|.||.+|+..+++. ...||.||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 3799999976 35667899999999999999976 36999997
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=3e-06 Score=71.96 Aligned_cols=52 Identities=31% Similarity=0.473 Sum_probs=42.5
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...||||.+.|.+|++++|||.||+.||+.+++. ....||.|+.+++..+++
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccce
Confidence 3689999999999999999999999999999976 578999999999988774
No 39
>PHA02926 zinc finger-like protein; Provisional
Probab=98.05 E-value=3.7e-06 Score=84.12 Aligned_cols=52 Identities=31% Similarity=0.712 Sum_probs=39.5
Q ss_pred hcCCCCCCCcccccccC---------ceecCCcccccHHHHhhhhcCC----CCCCCCCCCcccc
Q 004295 649 QKGEQGECPICLEAFED---------AVLTPCAHRLCRECLLGSWKTP----TSGLCPVCRKTIS 700 (763)
Q Consensus 649 ~~~~~~eC~IC~~~~~~---------~~it~C~H~fC~~Ci~~~~~~~----~~~~CP~Cr~~i~ 700 (763)
+..++.+|+||++.+-+ .++.+|.|.||..||..+.+.. ....||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34566899999985422 4677999999999999887542 2456999999754
No 40
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.97 E-value=5.7e-06 Score=62.19 Aligned_cols=44 Identities=48% Similarity=1.145 Sum_probs=35.9
Q ss_pred CCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCccc
Q 004295 655 ECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (763)
Q Consensus 655 eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i 699 (763)
+|+||.+.+..+..+ +|+|.||.+|+..+++. ....||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 599999988666554 59999999999998875 467899999753
No 41
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.95 E-value=6.4e-06 Score=62.70 Aligned_cols=41 Identities=41% Similarity=0.946 Sum_probs=35.0
Q ss_pred CCCcccccc---cCceecCCcccccHHHHhhhhcCCCCCCCCCCCc
Q 004295 655 ECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (763)
Q Consensus 655 eC~IC~~~~---~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~ 697 (763)
+|++|.+.. ..+.+++|+|.||.+|+.... .....||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 599999976 357899999999999999876 55789999985
No 42
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.3e-06 Score=86.43 Aligned_cols=53 Identities=36% Similarity=0.824 Sum_probs=46.7
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
.+..|+||++.+..|.-|+|+|+||-.||...|.......||.||+.....++
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 45789999999999999999999999999998877778889999997666554
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.7e-06 Score=98.72 Aligned_cols=53 Identities=30% Similarity=0.765 Sum_probs=47.5
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
-..||.|....-+.+|+.|+|.||..|+...+.. ...+||.|+.++..+|+..
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCcccccc
Confidence 3689999999999999999999999999988754 5789999999999998864
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.90 E-value=4.4e-06 Score=63.05 Aligned_cols=37 Identities=41% Similarity=1.003 Sum_probs=22.7
Q ss_pred CCcccccccC----ceecCCcccccHHHHhhhhcCC--CCCCCC
Q 004295 656 CPICLEAFED----AVLTPCAHRLCRECLLGSWKTP--TSGLCP 693 (763)
Q Consensus 656 C~IC~~~~~~----~~it~C~H~fC~~Ci~~~~~~~--~~~~CP 693 (763)
||||.+ +.+ |++++|||.||++|+....+.. ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 766 8999999999999999988754 456676
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.86 E-value=7.6e-06 Score=66.17 Aligned_cols=47 Identities=32% Similarity=0.804 Sum_probs=26.2
Q ss_pred CCCCcccccccCce-ecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 654 GECPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 654 ~eC~IC~~~~~~~~-it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
..|++|.+.+.+|+ ++.|.|.||..|+.+.+.. .||.|+.|...+|+
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHHHHHH
Confidence 57999999999997 6889999999999886653 59999999777665
No 46
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.81 E-value=6e-06 Score=86.54 Aligned_cols=49 Identities=35% Similarity=0.804 Sum_probs=44.4
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
..|.||.+-+.-|+||+|+|.||.-||..++.. .+.||.|+.++...+|
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccchhhh
Confidence 479999999999999999999999999999875 6899999999887654
No 47
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.80 E-value=1.4e-05 Score=57.90 Aligned_cols=39 Identities=46% Similarity=1.206 Sum_probs=34.7
Q ss_pred CCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCC
Q 004295 656 CPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (763)
Q Consensus 656 C~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~C 695 (763)
|+||.+....+++++|+|.||..|+..+++ .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 899999988999999999999999999887 445779987
No 48
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.69 E-value=1.7e-05 Score=81.58 Aligned_cols=45 Identities=31% Similarity=0.666 Sum_probs=41.0
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
..|-||.+-+.-|.+|+|+|.||.-||..++.. ++-||.||.+.-
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHH
Confidence 579999999999999999999999999999865 799999998753
No 49
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=3.8e-05 Score=81.69 Aligned_cols=50 Identities=26% Similarity=0.700 Sum_probs=39.2
Q ss_pred CCCCccccc--ccC---ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 654 GECPICLEA--FED---AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 654 ~eC~IC~~~--~~~---~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
..||+|... +.. ..+.+|||.||..|+...+..+ ...||.|+.++...++
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-SGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-CCCCCCCCCccchhhc
Confidence 579999872 222 2345899999999999988653 4689999999988774
No 50
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.62 E-value=5.8e-05 Score=91.49 Aligned_cols=86 Identities=27% Similarity=0.525 Sum_probs=70.8
Q ss_pred CCCCCccccccc-CceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHH
Q 004295 653 QGECPICLEAFE-DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLL 731 (763)
Q Consensus 653 ~~eC~IC~~~~~-~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl 731 (763)
...|+||.+.+. .-.+..|+|.+|..|...+... ...||.|....- ..++||....
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~~---------------------dfg~kI~~v~ 1209 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIKG---------------------DFGTKIDSVV 1209 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhhh---------------------hhccCchhHH
Confidence 358999999887 5678999999999999887654 578998883211 3489999998
Q ss_pred HHHHHHhcC--CCeEEEecCchhHHHHhhhhc
Q 004295 732 KELENLCLS--GSKSILFSQWTAFLDLLQIPL 761 (763)
Q Consensus 732 ~~L~~l~~~--~~KvVVFSQfts~LDlIe~~L 761 (763)
.++..++-+ -+|+||||||+..||.+|..+
T Consensus 1210 ~~il~iK~k~~qekvIvfsqws~~ldV~e~~~ 1241 (1394)
T KOG0298|consen 1210 IAILYIKFKNEQEKVIVFSQWSVVLDVKELRY 1241 (1394)
T ss_pred HHHHHHhccCcCceEEEEEehHHHHHHHHHHH
Confidence 888887655 889999999999999999875
No 51
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=1.8e-05 Score=61.27 Aligned_cols=46 Identities=43% Similarity=0.885 Sum_probs=41.0
Q ss_pred CCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 654 GECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
.||-||++...+.++..|+|+ .|.+|-.+.++. ..+.||.||.+|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 799999998888899999998 599999888875 6889999999875
No 52
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=97.45 E-value=0.0007 Score=72.97 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=44.0
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhccccc---------chHHHHHHHHHHHhhccCccccc
Q 004295 541 DMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILH---------NYASILELLLRLRQCCDHPFLVM 602 (763)
Q Consensus 541 ~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~---------~~~~il~~LlrLRqiC~HP~Lv~ 602 (763)
.++.+.+.|+..|+++|+.+.......+.++........ ....+-..+.+|+.+|+||+|+.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~Llv 74 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLV 74 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccc
Confidence 357788999999999999999999888888875433211 22556777899999999999975
No 53
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=5.6e-05 Score=80.67 Aligned_cols=45 Identities=53% Similarity=1.199 Sum_probs=40.5
Q ss_pred CCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCc
Q 004295 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~ 697 (763)
.+...|+||++.+..|.+++|+|.||+.|+...+. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 34579999999999999999999999999999988 5689999993
No 54
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=8.2e-05 Score=77.56 Aligned_cols=53 Identities=32% Similarity=0.617 Sum_probs=45.0
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
..||+||...+.-|+.+.|.|.||..||..++.. ....|++||.+|+.+=+++
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~i~~~ 59 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDSTIDFE 59 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCcchhcc
Confidence 4799999999999999999999999999987754 2556999999998764443
No 55
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.14 E-value=0.00033 Score=59.43 Aligned_cols=42 Identities=38% Similarity=0.863 Sum_probs=32.8
Q ss_pred CCCCCcccccccC-------------ceecCCcccccHHHHhhhhcCCCCCCCCCCC
Q 004295 653 QGECPICLEAFED-------------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCR 696 (763)
Q Consensus 653 ~~eC~IC~~~~~~-------------~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr 696 (763)
...|.||.+++.+ .....|+|.|...||..+++.. ..||.||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN--NTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS--SB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC--CcCCCCC
Confidence 4569999998732 2346799999999999999764 4999998
No 56
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00013 Score=77.69 Aligned_cols=47 Identities=34% Similarity=0.903 Sum_probs=37.8
Q ss_pred CCCCCcccccccCcee-cCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 653 QGECPICLEAFEDAVL-TPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~i-t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+..|+||++.+...+- ..|+|.||.+||...++. ....||.||+.+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 3689999997766554 469999999999988764 3678999998754
No 57
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00034 Score=72.81 Aligned_cols=49 Identities=35% Similarity=0.732 Sum_probs=39.5
Q ss_pred CCCCCCCcccccc---cCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 651 GEQGECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 651 ~~~~eC~IC~~~~---~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+...||.||++.+ +.-+++||.|.|...|++.++- .-..+||+||+++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~-~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL-GYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHh-hhcccCCccCCCCC
Confidence 3447999999954 4567899999999999998874 23678999999764
No 58
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00036 Score=74.85 Aligned_cols=49 Identities=37% Similarity=0.811 Sum_probs=41.0
Q ss_pred CCCCCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+...||.||+...-+.+++||.|+ .|.+|..... -....||.||++|..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence 456799999999999999999998 5999987654 236789999999764
No 59
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=96.87 E-value=0.00065 Score=51.42 Aligned_cols=40 Identities=33% Similarity=0.403 Sum_probs=32.9
Q ss_pred HHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
|+.+.+|.+|.|. ++-..++.|.++++||++||+.||+.+
T Consensus 1 ~e~i~~F~~iTg~--~~~~A~~~L~~~~wdle~Av~~y~~~~ 40 (43)
T PF14555_consen 1 DEKIAQFMSITGA--DEDVAIQYLEANNWDLEAAVNAYFDDG 40 (43)
T ss_dssp HHHHHHHHHHH-S--SHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred CHHHHHHHHHHCc--CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5789999999997 334788899999999999999999963
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.85 E-value=0.00072 Score=54.42 Aligned_cols=42 Identities=38% Similarity=0.713 Sum_probs=32.3
Q ss_pred CCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCC
Q 004295 653 QGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPV 694 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~ 694 (763)
+..|||...++.+|+.. .|+|.|.++.|.++++......||.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 47899999999999985 8999999999999997777889998
No 61
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.82 E-value=0.017 Score=66.20 Aligned_cols=184 Identities=22% Similarity=0.219 Sum_probs=113.9
Q ss_pred CccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCC
Q 004295 329 STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAM 408 (763)
Q Consensus 329 ~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEM 408 (763)
..+..+||+||.+++.=+... |+ + .+.||+.=--
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~----------------~~-----------------------------~-~~~gvivlpT 64 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKN----------------RR-----------------------------T-ERRGVIVLPT 64 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhh----------------cc-----------------------------c-CCceEEEeCC
Confidence 456678999999999877652 11 1 2358888889
Q ss_pred CCchHHHHHHHHHhcccCCCCcccccCC-CCCCCCcccccccccC------ccccccC----ccccchHHHhhh---ccc
Q 004295 409 GLGKTVMTIALLLTHSQRGGLSGIQSAS-QPSDGGIEGYDISDQS------PNLMKKE----PKSLSIDKLIKQ---TNT 474 (763)
Q Consensus 409 GLGKTIq~LaLI~~~~~~~~~l~v~p~s-l~~~w~~ei~~~~~~~------~~~~~~~----~~~~~~~~~~~~---~~~ 474 (763)
|-|||+.++..|...... +++++|.. ++.+|...+..+.... ....+.. ..+..++..... ...
T Consensus 65 GaGKT~va~~~~~~~~~~--~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~ 142 (442)
T COG1061 65 GAGKTVVAAEAIAELKRS--TLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEF 142 (442)
T ss_pred CCCHHHHHHHHHHHhcCC--EEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccCCCcEEEEEhHHHhhhhhhhhh
Confidence 999999999999888765 78888875 4567864443332211 0001111 111222222221 111
Q ss_pred cccCceEEE------cCcchhhhhhhhcCCCc---------ccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCC
Q 004295 475 LINGGTLII------CPMTLLGQWNKLIQKPY---------EEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPP 539 (763)
Q Consensus 475 ~~~~~TLIV------~P~sll~qW~~~i~~P~---------e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPp 539 (763)
....-.||| .|..-...|-..+..++ +..|......+...+.|++......+...+|- |-|
T Consensus 143 ~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~----Lap 218 (442)
T COG1061 143 LGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGY----LAP 218 (442)
T ss_pred cccccCEEEEEccccCCcHHHHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCC----ccc
Confidence 111234443 24444556655555555 24444567777778888888877655444332 889
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHHH
Q 004295 540 ADMQVIYCELTEAEKDFYEALFKRS 564 (763)
Q Consensus 540 k~~~vv~v~LS~~Er~lY~~i~~~~ 564 (763)
.....+++.+++.++..|.....+.
T Consensus 219 ~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 219 YKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred eEEEEEEeccchHHHHHhhhhhhhh
Confidence 9999999999999999998876654
No 62
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00088 Score=69.16 Aligned_cols=49 Identities=29% Similarity=0.603 Sum_probs=41.0
Q ss_pred CCCCCCcccccccCceecC-CcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~-C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
...+|++|.++...|.+.. |+|.+|.-|+...........||.|++...
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4579999999877776654 999999999998887777789999998643
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.65 E-value=0.0004 Score=73.61 Aligned_cols=49 Identities=29% Similarity=0.725 Sum_probs=40.6
Q ss_pred CCCCCCcccccccCc-eecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 652 EQGECPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~-~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
.-..|.+|..-+.++ +|+.|.|.||+.||..|+.. ...||.|...|-..
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCc
Confidence 346899999966555 58899999999999999986 78899999876544
No 64
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.00097 Score=70.67 Aligned_cols=49 Identities=33% Similarity=0.762 Sum_probs=43.1
Q ss_pred CCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.++.-||||.-....++++||+|.-|++||..++-+ ...|+.|..++..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc--CCeeeEecceeee
Confidence 566899999999999999999999999999998764 5789999988664
No 65
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.55 E-value=0.0019 Score=55.78 Aligned_cols=48 Identities=33% Similarity=0.789 Sum_probs=36.4
Q ss_pred CCCCCccccccc-----------C-c-eecCCcccccHHHHhhhhcCC-CCCCCCCCCcccc
Q 004295 653 QGECPICLEAFE-----------D-A-VLTPCAHRLCRECLLGSWKTP-TSGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~~~~-----------~-~-~it~C~H~fC~~Ci~~~~~~~-~~~~CP~Cr~~i~ 700 (763)
+..|+||..+++ + | +.-.|.|.|..-||...++.+ ..+.||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 356777766544 2 3 344699999999999999875 4789999999754
No 66
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.54 E-value=0.0008 Score=65.96 Aligned_cols=43 Identities=33% Similarity=0.809 Sum_probs=38.1
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT 698 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 698 (763)
..|.||.+...+|++|.|+|.||..|...-++. .+.|..|...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK--GDECGVCGKA 239 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc--CCcceecchh
Confidence 689999999999999999999999998776554 6889999864
No 67
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0015 Score=72.64 Aligned_cols=48 Identities=38% Similarity=0.829 Sum_probs=42.3
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.+.+|-+|+..+..|+.|+|+|.||..||..... ....||.||.++-.
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc--cCCCCccccccccc
Confidence 4579999999999999999999999999988665 57889999988654
No 68
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0014 Score=68.39 Aligned_cols=45 Identities=31% Similarity=0.713 Sum_probs=39.3
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+-|-||...+.+|++|.|+|.||..|....++. ..+|+.|.+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK--GEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc--CCcceecccccc
Confidence 569999999999999999999999998776553 689999988643
No 69
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.28 E-value=0.0016 Score=70.04 Aligned_cols=50 Identities=34% Similarity=0.751 Sum_probs=42.8
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
.-|-||.+.-.+.-|-+|+|..|..|+..+-.......||.||..|.-.+
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 47999999999999999999999999988665556889999998876543
No 70
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0028 Score=67.74 Aligned_cols=48 Identities=27% Similarity=0.740 Sum_probs=39.2
Q ss_pred cCCCCCCCcccccc-cC------------ceecCCcccccHHHHhhhhcCCCCCCCCCCCccc
Q 004295 650 KGEQGECPICLEAF-ED------------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (763)
Q Consensus 650 ~~~~~eC~IC~~~~-~~------------~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i 699 (763)
...+..|-||++.| .. |--.+|||.+...|+..+++. +..||.||.|+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCcc
Confidence 45568999999964 32 356899999999999999875 57899999983
No 71
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0021 Score=75.30 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=41.6
Q ss_pred CCCCCCcccccccC-----ceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFED-----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~-----~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
....|+||.+.+.. +...+|+|.||..|+..+++. +..||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhhc
Confidence 34799999998877 789999999999999999986 7899999995443
No 72
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0035 Score=68.38 Aligned_cols=51 Identities=35% Similarity=0.791 Sum_probs=39.1
Q ss_pred cCCCCCCCcccccccCce--------ecCCcccccHHHHhhhhcCC-----CCCCCCCCCcccc
Q 004295 650 KGEQGECPICLEAFEDAV--------LTPCAHRLCRECLLGSWKTP-----TSGLCPVCRKTIS 700 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~~~--------it~C~H~fC~~Ci~~~~~~~-----~~~~CP~Cr~~i~ 700 (763)
.....+|.||++.+.+.. +.+|.|.||..|+..+-... ....||.||.+.+
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 355689999999665544 36799999999998876332 2688999998754
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.0065 Score=66.01 Aligned_cols=52 Identities=29% Similarity=0.733 Sum_probs=40.2
Q ss_pred CCCCccccccc---CceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 654 GECPICLEAFE---DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 654 ~eC~IC~~~~~---~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
..|.||+|... ...++||.|.|...||..++..- ...||.|+..+-.....+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRTDSGSE 284 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCCCCCCC
Confidence 48999999543 45689999999999999988643 566999998765544333
No 74
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.47 E-value=0.01 Score=58.32 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=33.4
Q ss_pred cCceeecCCCCchHHHHHHHHHhcccCCCCcccccC-CCCCCCCccc
Q 004295 400 RGGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSA-SQPSDGGIEG 445 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~-sl~~~w~~ei 445 (763)
+.++|.-.+|-|||+.++.++..... ..++++|. ++..+|..++
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~--~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELAR--KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHC--EEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcChhhhhhhhcccc--ceeEecCHHHHHHHHHHHH
Confidence 45888889999999999998877766 56777776 4445565544
No 75
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0068 Score=67.08 Aligned_cols=47 Identities=38% Similarity=0.843 Sum_probs=37.3
Q ss_pred CCCCCcccccccC-----------------ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 653 QGECPICLEAFED-----------------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~~~~~-----------------~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
...|+||+.+++- -++|||-|.|...|++.+.+. -.-.||.||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 4789999986531 357899999999999998763 2457999999864
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.016 Score=59.00 Aligned_cols=56 Identities=25% Similarity=0.493 Sum_probs=47.5
Q ss_pred CCCCCCcccccccC----ceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCC
Q 004295 652 EQGECPICLEAFED----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT 709 (763)
Q Consensus 652 ~~~eC~IC~~~~~~----~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~ 709 (763)
....||+|.+.+.+ +++.+|+|++|.+|++..+.. ...||.|..+++.+|++.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~plkdrdiI~Lqr 279 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPLKDRDIIGLQR 279 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--cccccCCCCcCcccceEeeec
Confidence 44689999986654 567899999999999999875 678999999999999997754
No 77
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.0078 Score=61.99 Aligned_cols=60 Identities=17% Similarity=0.453 Sum_probs=48.5
Q ss_pred CCCCCCCcccccccC----------ceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCC
Q 004295 651 GEQGECPICLEAFED----------AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTG 710 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~----------~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~ 710 (763)
.++..|.+|...++. ..-+.|.|+|...||..+.--+..+.||.|.+.++.+.++.-|.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWe 291 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWE 291 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccc
Confidence 456789999986543 234789999999999999877788999999999998888765554
No 78
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.91 E-value=0.014 Score=65.54 Aligned_cols=52 Identities=40% Similarity=0.944 Sum_probs=44.4
Q ss_pred CCCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+...|++|...+.+|+.+ .|+|.||..|+..+... ...||.|+..+.....+
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQAEEL 72 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchhhcc
Confidence 346899999999999995 99999999999988765 88999999887665544
No 79
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.0089 Score=64.46 Aligned_cols=42 Identities=43% Similarity=0.933 Sum_probs=35.5
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
.-|.||.+...+.+..+|||+.| |..-+-+ -+.||.||+.|.
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~---l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH---LPQCPVCRQRIR 347 (355)
T ss_pred CceEEecCCccceeeecCCcEEE--chHHHhh---CCCCchhHHHHH
Confidence 68999999999999999999998 8776544 455999998764
No 80
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.80 E-value=0.053 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=20.7
Q ss_pred cCceeecCCCCchHHHHHHHHHhccc
Q 004295 400 RGGILADAMGLGKTVMTIALLLTHSQ 425 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI~~~~~ 425 (763)
...++...+|.|||..++.++.....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 36899999999999988777766543
No 81
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=94.69 E-value=0.58 Score=53.15 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=35.2
Q ss_pred ccchhHHHHHHHHHHHhcC--CCeEEEecCchhHHHHhhhhcc
Q 004295 722 VESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 722 ~~SsKi~aLl~~L~~l~~~--~~KvVVFSQfts~LDlIe~~L~ 762 (763)
..-.|+..|.++|++-.+. +.++|||+||..+.+.|-..|.
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~ 387 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLK 387 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHH
Confidence 3577999999999986633 8999999999999999988775
No 82
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.46 E-value=0.019 Score=59.83 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=35.9
Q ss_pred CCCCcccccccCceecC-CcccccHHHHhhhhcCCCCCCCCCCCc
Q 004295 654 GECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRK 697 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~-C~H~fC~~Ci~~~~~~~~~~~CP~Cr~ 697 (763)
.-|+.|..-+..|+-|+ |+|.||.+||...+-. ....||+|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence 57999999999999985 7999999999865532 3688999965
No 83
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.18 E-value=0.039 Score=42.56 Aligned_cols=43 Identities=30% Similarity=0.852 Sum_probs=21.6
Q ss_pred CCcccccccC--ceec--CCcccccHHHHhhhhcCCCCCCCCCCCccc
Q 004295 656 CPICLEAFED--AVLT--PCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (763)
Q Consensus 656 C~IC~~~~~~--~~it--~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i 699 (763)
||+|.+.++. ..+. +|++..|+.|..+..+ ...++||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~-~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE-NEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT-SS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh-ccCCCCCCCCCCC
Confidence 7899997743 2344 4799999999888765 3589999999864
No 84
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.10 E-value=0.045 Score=58.14 Aligned_cols=54 Identities=28% Similarity=0.547 Sum_probs=44.3
Q ss_pred CCCCCcccccccC----ceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCC
Q 004295 653 QGECPICLEAFED----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPT 709 (763)
Q Consensus 653 ~~eC~IC~~~~~~----~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~ 709 (763)
...|||+...|.. ..+-+|||+||.+|+.+.- ....||.|..+++..|++.+.+
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCEEEecC
Confidence 4789999998864 2456999999999999872 3557999999999999987643
No 85
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.03 E-value=0.024 Score=62.47 Aligned_cols=46 Identities=37% Similarity=0.873 Sum_probs=36.6
Q ss_pred CCCCCCCcccccccCce----ecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 651 GEQGECPICLEAFEDAV----LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~----it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
.+-+.||+|++.|++.+ -+.|+|.|--.|+..++. ..||+||--.+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 34589999999988754 357999999999998764 47888886544
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.68 E-value=0.033 Score=43.96 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=36.4
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
..|-.|...-...++.+|+|+.|..|.... .-.-||.|..+++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~----rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE----RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh----hccCCCCCCCcccCCCC
Confidence 457777776667788999999999997532 34679999999887654
No 87
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.56 E-value=0.031 Score=57.40 Aligned_cols=46 Identities=35% Similarity=0.837 Sum_probs=33.0
Q ss_pred CCCcccc--cccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 655 ECPICLE--AFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 655 eC~IC~~--~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
-|-.|.. .-+...+|.|+|+||..|..... ...||.|+.++....+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC----ccccccccceeeeeec
Confidence 4777776 33344589999999999975432 2389999998765443
No 88
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.025 Score=47.34 Aligned_cols=35 Identities=34% Similarity=0.796 Sum_probs=28.1
Q ss_pred ceec-CCcccccHHHHhhhhcCC-CCCCCCCCCcccc
Q 004295 666 AVLT-PCAHRLCRECLLGSWKTP-TSGLCPVCRKTIS 700 (763)
Q Consensus 666 ~~it-~C~H~fC~~Ci~~~~~~~-~~~~CP~Cr~~i~ 700 (763)
|.+. -|.|.|-.-||...+..+ .+..||+||+...
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4443 599999999999998765 4789999998654
No 89
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.44 E-value=0.071 Score=55.95 Aligned_cols=48 Identities=33% Similarity=0.713 Sum_probs=35.8
Q ss_pred CCCCcccc---cccCceecCCcccccHHHHhhhhcC---------------------CCCCCCCCCCccccc
Q 004295 654 GECPICLE---AFEDAVLTPCAHRLCRECLLGSWKT---------------------PTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~---~~~~~~it~C~H~fC~~Ci~~~~~~---------------------~~~~~CP~Cr~~i~~ 701 (763)
..|.||+= .-+..++|.|.|.+-.-|+..|+.. +....||+||.+|..
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 56777765 3344678999999999999988742 124679999998754
No 90
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.02 Score=59.77 Aligned_cols=41 Identities=37% Similarity=0.864 Sum_probs=33.8
Q ss_pred CCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 654 GECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
.-|.||++.+.+-++++|||+ .|.+|-. ....||.||+.|-
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGk------rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGK------RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcc------ccccCchHHHHHH
Confidence 459999999999999999997 5888843 3458999998653
No 91
>PHA02558 uvsW UvsW helicase; Provisional
Probab=93.09 E-value=0.046 Score=63.67 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=34.5
Q ss_pred CceeecCCCCchHHHHHHHHHh--cccCCCCcccccC-CCCCCCCccccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLT--HSQRGGLSGIQSA-SQPSDGGIEGYDIS 449 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~--~~~~~~~l~v~p~-sl~~~w~~ei~~~~ 449 (763)
.|||.-..|.|||+.++.++.. ......+++++|. .++.+|..++.++.
T Consensus 131 ~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 131 RRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 3788889999999988766432 2233367888887 46678877776543
No 92
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.93 E-value=0.037 Score=65.67 Aligned_cols=49 Identities=27% Similarity=0.743 Sum_probs=39.3
Q ss_pred CCCCCCccccccc--Cc-----eecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFE--DA-----VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~--~~-----~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
.-.||+||+..++ +. .-..|.|.|...|+-.+++......||.||..|+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3489999998432 22 2235999999999999999999999999997664
No 93
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.061 Score=58.88 Aligned_cols=43 Identities=28% Similarity=0.654 Sum_probs=33.5
Q ss_pred CCCCcccccc---cCceecCCcccccHHHHhhhhcCC------CCCCCCCCC
Q 004295 654 GECPICLEAF---EDAVLTPCAHRLCRECLLGSWKTP------TSGLCPVCR 696 (763)
Q Consensus 654 ~eC~IC~~~~---~~~~it~C~H~fC~~Ci~~~~~~~------~~~~CP~Cr 696 (763)
..|.||++.. .....++|.|+||+.|+.+|+... ..-+||.|.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 7999999843 346789999999999999997532 356787654
No 94
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.66 E-value=0.028 Score=65.43 Aligned_cols=49 Identities=29% Similarity=0.623 Sum_probs=37.0
Q ss_pred CCCCcccccccCce-e--cCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 654 GECPICLEAFEDAV-L--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 654 ~eC~IC~~~~~~~~-i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
..||+|.....+.. . .+|.|.||..|+..+.+. ...||.||..+..-.+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 57899988554433 2 469999999999988764 5789999998765433
No 95
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.89 E-value=0.13 Score=40.07 Aligned_cols=42 Identities=26% Similarity=0.680 Sum_probs=35.1
Q ss_pred CCCcccc--cccCceecCCc-----ccccHHHHhhhhcCCCCCCCCCCC
Q 004295 655 ECPICLE--AFEDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVCR 696 (763)
Q Consensus 655 eC~IC~~--~~~~~~it~C~-----H~fC~~Ci~~~~~~~~~~~CP~Cr 696 (763)
.|.||.+ ..+++.+.||. |.+-.+|+..++.......||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 55677899984 899999999999877777999985
No 96
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=0.08 Score=54.11 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=29.6
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhh
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSW 684 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~ 684 (763)
.-|+.|+.|+.+|++++-||+||++||.+|+
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 5799999999999999999999999999987
No 97
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.075 Score=58.06 Aligned_cols=53 Identities=25% Similarity=0.644 Sum_probs=43.0
Q ss_pred CCCCcccccccC-----ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 654 GECPICLEAFED-----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 654 ~eC~IC~~~~~~-----~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
..||||++...- .+...|+|.|-.+||+.++.......||.|...-.+++++.
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~ 62 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRP 62 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHH
Confidence 689999995432 35678999999999999996556788999998877777653
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.68 E-value=0.11 Score=56.14 Aligned_cols=42 Identities=31% Similarity=0.884 Sum_probs=35.0
Q ss_pred CCCCCcccccccCceecCC--cccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 653 QGECPICLEAFEDAVLTPC--AHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C--~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
-.+||+|.+.+..|+. .| ||+.|..|-.. ...+||.||.++.
T Consensus 48 lleCPvC~~~l~~Pi~-QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIF-QCDNGHLACSSCRTK-----VSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCcccce-ecCCCcEehhhhhhh-----hcccCCccccccc
Confidence 3699999999988774 56 99999999753 3578999999887
No 99
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.31 E-value=0.056 Score=45.47 Aligned_cols=49 Identities=29% Similarity=0.533 Sum_probs=23.5
Q ss_pred CCCCCccccccc-C---cee----cCCcccccHHHHhhhhcCC---------CCCCCCCCCccccc
Q 004295 653 QGECPICLEAFE-D---AVL----TPCAHRLCRECLLGSWKTP---------TSGLCPVCRKTISR 701 (763)
Q Consensus 653 ~~eC~IC~~~~~-~---~~i----t~C~H~fC~~Ci~~~~~~~---------~~~~CP~Cr~~i~~ 701 (763)
+.+|+||+.... + |.+ ..|++.|-..||.+++... ..+.||.|+++|+-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 368999998543 2 221 2588888889999987531 13579999998763
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=0.14 Score=53.73 Aligned_cols=49 Identities=24% Similarity=0.765 Sum_probs=36.4
Q ss_pred CCCcccc-cc----cCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 655 ECPICLE-AF----EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 655 eC~IC~~-~~----~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
.||+|.. .. .-..+-+|+|..|.+|+...+.. ....||.|...+-+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhhccc
Confidence 5999975 22 22345699999999999887654 47889999998766543
No 101
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.67 E-value=0.1 Score=47.84 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=32.8
Q ss_pred CceeecCCCCchHHHHHHHHHhccc---CCCCcccccCCCCCCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSASQPSDG 441 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~---~~~~l~v~p~sl~~~w 441 (763)
+.++...+|.|||.+++.++..... ....++++|...+.+|
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~ 45 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQ 45 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHH
Confidence 6899999999999999999887663 3567888888665544
No 102
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=90.39 E-value=0.26 Score=35.88 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=29.6
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHH
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINI 43 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~ 43 (763)
++++.+..+... | ++.-++.++|..++||+++||+.
T Consensus 1 i~~~~v~~L~~m-G--f~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 1 IDEEKVQQLMEM-G--FSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp SHHHHHHHHHHH-T--S-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CCHHHHHHHHHc-C--CCHHHHHHHHHHcCCCHHHHHHh
Confidence 467788888888 7 55558999999999999999985
No 103
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.14 Score=54.55 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=42.3
Q ss_pred CCCCCCCcccccccCce-ecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 651 GEQGECPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~-it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
.....||+|.....+|. ++-.|-+||..|+..|.. ...+||+=..|++.++++
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASVDHLI 351 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcchHHHHH
Confidence 45689999999766665 455699999999999987 478999888877766554
No 104
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.52 E-value=0.12 Score=56.15 Aligned_cols=49 Identities=31% Similarity=0.574 Sum_probs=40.7
Q ss_pred CCCCCCcccccc----cCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAF----EDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~----~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
-...|..|.+.+ +...-+||.|.|...|+.+++.+.....||.||+.++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 347899999844 4455689999999999999998888899999996544
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.54 E-value=0.24 Score=52.75 Aligned_cols=52 Identities=27% Similarity=0.828 Sum_probs=38.3
Q ss_pred CCCCCCcccccccC--cee--cCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 652 EQGECPICLEAFED--AVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~--~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
++.-||.|.++|+- -.+ -+||-..|+-|.... +....++||.||...+...+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~i-rq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNI-RQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHH-HhhccCCChHhhhhccccce
Confidence 34569999998763 333 468999999997654 33467999999998776554
No 106
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.43 E-value=0.19 Score=53.65 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=39.7
Q ss_pred cCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcc
Q 004295 650 KGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT 698 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 698 (763)
+++...|.||.+.+.-..++||.|..|--|-...-.--....||.||+.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 4556789999999999999999999999998764332235679999974
No 107
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=87.48 E-value=0.61 Score=33.88 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=27.2
Q ss_pred HHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
+.++++.+. | ++.-.++++|+.++||+++|++.+|+
T Consensus 3 ~~v~~L~~m-G--f~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 3 EKLEQLLEM-G--FSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHc-C--CCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 344444442 5 44558999999999999999999874
No 108
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.66 E-value=0.17 Score=51.45 Aligned_cols=51 Identities=25% Similarity=0.822 Sum_probs=36.0
Q ss_pred CCCCCcccc-cccC----ceecC-CcccccHHHHhhhhcCCCCCCCC--CCCcccccccc
Q 004295 653 QGECPICLE-AFED----AVLTP-CAHRLCRECLLGSWKTPTSGLCP--VCRKTISRQDL 704 (763)
Q Consensus 653 ~~eC~IC~~-~~~~----~~it~-C~H~fC~~Ci~~~~~~~~~~~CP--~Cr~~i~~~~l 704 (763)
...||+|.. .--+ ..|.| |.|..|.+|+...+.. ..+.|| -|..-+.+...
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILRK~kf 68 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILRKIKF 68 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHHHhcc
Confidence 358999976 2222 23445 9999999999988765 367798 79887665443
No 109
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=86.39 E-value=0.63 Score=34.86 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
++.++++.++-++... -.|...|..++||+|+|||.++++
T Consensus 2 ~~~v~~L~~mFP~~~~-~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDR-EVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-H-HHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5677888888887555 356666689999999999999864
No 110
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=86.12 E-value=0.79 Score=33.09 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=26.5
Q ss_pred HHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhc
Q 004295 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIF 45 (763)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~ 45 (763)
+.++.+.+. | ++.-.++++|+.++||+++|++.+|
T Consensus 3 ~~v~~L~~m-G--f~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEM-G--FSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHc-C--CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 444444444 4 5555899999999999999999876
No 111
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=86.08 E-value=0.47 Score=52.09 Aligned_cols=35 Identities=29% Similarity=0.859 Sum_probs=30.8
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcC
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT 686 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~ 686 (763)
++..|+||..-..+|+|++|+|..|+-|.....-.
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 44689999999999999999999999999876543
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.13 E-value=0.55 Score=43.93 Aligned_cols=51 Identities=29% Similarity=0.748 Sum_probs=40.5
Q ss_pred CCCCCCCcccccccCcee-cC---CcccccHHHHhhhhcCC-CCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFEDAVL-TP---CAHRLCRECLLGSWKTP-TSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~i-t~---C~H~fC~~Ci~~~~~~~-~~~~CP~Cr~~i~~ 701 (763)
..--||-||.+...+..+ .| ||-..|.-|-...|+.. .-+.||.|++.+..
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 344699999996655544 34 89999999999999875 47999999987654
No 113
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.72 E-value=0.32 Score=57.27 Aligned_cols=54 Identities=30% Similarity=0.675 Sum_probs=45.2
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCC-CCCCCCCCcccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~-~~~CP~Cr~~i~~~~l~~ 706 (763)
..||+||....-+++.+.|.|.||+.|+.-.+.... ...||.|+..+.+..+-+
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 369999999999999999999999999987665443 678999998887766554
No 114
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.36 E-value=0.79 Score=44.30 Aligned_cols=19 Identities=47% Similarity=0.950 Sum_probs=16.1
Q ss_pred CCCCCcccccccCceecCC
Q 004295 653 QGECPICLEAFEDAVLTPC 671 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C 671 (763)
...||||++...+++++-|
T Consensus 2 d~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CccCceeccCCCceEEEEe
Confidence 4689999999999988765
No 115
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=83.75 E-value=1.6 Score=32.73 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=30.9
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
.++.++++...-++... -.|.+.|..++||+++|||.++.+
T Consensus 2 ~~~~v~~L~~mFP~l~~-~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPNLDE-EVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCCCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35667777777776555 345566688999999999999875
No 116
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=83.71 E-value=0.37 Score=54.39 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=64.9
Q ss_pred CCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCc
Q 004295 332 KCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLG 411 (763)
Q Consensus 332 ~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLG 411 (763)
.+.+||||...|.-|...- ..|.||+-=--|-|
T Consensus 300 st~iRpYQEksL~KMFGNg-----------------------------------------------RARSGiIVLPCGAG 332 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNG-----------------------------------------------RARSGIIVLPCGAG 332 (776)
T ss_pred ccccCchHHHHHHHHhCCC-----------------------------------------------cccCceEEEecCCC
Confidence 4689999999999997542 25679999999999
Q ss_pred hHHHHHHHHHhcccCCCCcccccCC-CCCCCCcccccccccCccccccCccccchHHHhhhccccccCceEEEcCcchhh
Q 004295 412 KTVMTIALLLTHSQRGGLSGIQSAS-QPSDGGIEGYDISDQSPNLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLG 490 (763)
Q Consensus 412 KTIq~LaLI~~~~~~~~~l~v~p~s-l~~~w~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~ 490 (763)
||+.-++.+++.+.. +++.|-.+ -+.+|...+..|..-.......++ + ..+.+...++.++|.-++.+.
T Consensus 333 KtLVGvTAa~tikK~--clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT---s-----d~Ke~~~~~~gvvvsTYsMva 402 (776)
T KOG1123|consen 333 KTLVGVTAACTIKKS--CLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT---S-----DAKERFPSGAGVVVTTYSMVA 402 (776)
T ss_pred Cceeeeeeeeeeccc--EEEEecCccCHHHHHHHHHhhcccCccceEEee---c-----cccccCCCCCcEEEEeeehhh
Confidence 999988877776543 45544332 345777766666433222221111 1 122334455667777777664
No 117
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.65 E-value=0.71 Score=43.53 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHhcCCCCCCCcccccccC---ceecCC------cccccHHHHhhh
Q 004295 637 SRAYVQEVVEELQKGEQGECPICLEAFED---AVLTPC------AHRLCRECLLGS 683 (763)
Q Consensus 637 ~~~~~~~~l~~l~~~~~~eC~IC~~~~~~---~~it~C------~H~fC~~Ci~~~ 683 (763)
.+.++..++..+=.....||.||.+.+++ .+..+| -|+||.+|+..+
T Consensus 10 ~k~~l~~lf~~~w~~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 10 KKYYLERLFNDQWPRCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred HHHHHHHHHHHHccccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 45667777777665667899999997765 333455 488999999977
No 118
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=0.64 Score=50.71 Aligned_cols=46 Identities=26% Similarity=0.712 Sum_probs=34.1
Q ss_pred CCCCcccccc---cC-ceecCCcccccHHHHhhhhcCCCC-CCCCCCCccc
Q 004295 654 GECPICLEAF---ED-AVLTPCAHRLCRECLLGSWKTPTS-GLCPVCRKTI 699 (763)
Q Consensus 654 ~eC~IC~~~~---~~-~~it~C~H~fC~~Ci~~~~~~~~~-~~CP~Cr~~i 699 (763)
.+|.||.+-. .+ ..+..|||.|..-|+..+++.... ..||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 5899997622 12 234559999999999999976544 6899999433
No 119
>PHA03096 p28-like protein; Provisional
Probab=81.52 E-value=0.66 Score=49.74 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCCCcccccccC--------ceecCCcccccHHHHhhhhcC----CCCCCCCCCCcc
Q 004295 654 GECPICLEAFED--------AVLTPCAHRLCRECLLGSWKT----PTSGLCPVCRKT 698 (763)
Q Consensus 654 ~eC~IC~~~~~~--------~~it~C~H~fC~~Ci~~~~~~----~~~~~CP~Cr~~ 698 (763)
.+|.||++.... -++..|-|.||..|+..+... ...+.||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~ 235 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTV 235 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhH
Confidence 689999994322 245789999999999876532 224445555544
No 120
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=80.81 E-value=2 Score=46.34 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.1
Q ss_pred ccCCHHHHHHHHHHHh--hhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHH
Q 004295 501 EEGDERGLKLVQSILK--PIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEA 559 (763)
Q Consensus 501 e~~~~~~~~~L~~iL~--pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~ 559 (763)
+++...+.+.+..-|+ -.+++|.-+- -.-...++.+.|++.+.++||.
T Consensus 253 ~~gGv~amE~vA~dlKa~G~yiaR~LSf-----------~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 253 EKGGVGAMEMVAMDLKARGMYIARQLSF-----------EGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HhcCchHHHHHHHHHHhcchheeeeccc-----------CCceEEEEEecCCHHHHHHhcC
Confidence 3444455555555444 5788887763 3447889999999999999985
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.19 E-value=0.77 Score=51.54 Aligned_cols=51 Identities=29% Similarity=0.692 Sum_probs=36.0
Q ss_pred CCCCCccc-cccc---CceecCCcccccHHHHhhhhcC----CCCCCCCC--CCccccccc
Q 004295 653 QGECPICL-EAFE---DAVLTPCAHRLCRECLLGSWKT----PTSGLCPV--CRKTISRQD 703 (763)
Q Consensus 653 ~~eC~IC~-~~~~---~~~it~C~H~fC~~Ci~~~~~~----~~~~~CP~--Cr~~i~~~~ 703 (763)
..+|.||. +.+. ...+..|+|.||.+|+..+++. +..+.||. |...++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 47899999 4222 1235789999999999999863 45778874 666655443
No 122
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=80.07 E-value=2.3 Score=54.15 Aligned_cols=36 Identities=31% Similarity=0.233 Sum_probs=26.3
Q ss_pred cCceeecCCCCchHHHHHHHHHhccc---CCCCcccccC
Q 004295 400 RGGILADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSA 435 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI~~~~~---~~~~l~v~p~ 435 (763)
++++|.-.-|-|||+++++++..... ...++++++.
T Consensus 434 r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR 472 (1123)
T PRK11448 434 REILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDR 472 (1123)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecH
Confidence 57899999999999999988754432 2345666554
No 123
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.18 E-value=1.6 Score=52.20 Aligned_cols=39 Identities=23% Similarity=0.643 Sum_probs=34.2
Q ss_pred CCCCcccccccCcee-cCCcccccHHHHhhhhcCCCCCCCCCCCc
Q 004295 654 GECPICLEAFEDAVL-TPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (763)
Q Consensus 654 ~eC~IC~~~~~~~~i-t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~ 697 (763)
..|..|.-+++-|++ ..|+|.|...|+++ ....||.|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~-----~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLED-----KEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhcc-----CcccCCccch
Confidence 689999999998876 58999999999983 3678999997
No 124
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=78.56 E-value=1.3 Score=37.68 Aligned_cols=30 Identities=30% Similarity=0.655 Sum_probs=26.1
Q ss_pred cCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 669 TPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 669 t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
--|.|.|-.-||..++.. ...||.||++..
T Consensus 52 G~CnHaFH~HCI~rWL~T--k~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDT--KGVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhh--CCCCCCCCceeE
Confidence 459999999999999876 788999998754
No 125
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.47 E-value=1.1 Score=45.86 Aligned_cols=39 Identities=36% Similarity=0.822 Sum_probs=31.2
Q ss_pred CCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 656 CPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 656 C~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
|..|.+.-...++.||-|. +|..|-.. ...||.|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc------CccCCCCcChhh
Confidence 9999998777889999876 68888432 456999998754
No 126
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.41 E-value=2 Score=46.37 Aligned_cols=45 Identities=33% Similarity=0.777 Sum_probs=35.9
Q ss_pred CCCCccccccc------CceecCCcccccHHHHhhhhcCCCCCCCCCCCccc
Q 004295 654 GECPICLEAFE------DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTI 699 (763)
Q Consensus 654 ~eC~IC~~~~~------~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i 699 (763)
.+|-||.+... .|.++.|+|.+|..|+.....+. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~-~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS-RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc-eeeccCCCCcc
Confidence 68999998543 36778899999999998877654 45679999985
No 127
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=78.40 E-value=0.85 Score=48.32 Aligned_cols=43 Identities=26% Similarity=0.712 Sum_probs=29.5
Q ss_pred CCCCccccccc-CceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 654 GECPICLEAFE-DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 654 ~eC~IC~~~~~-~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
-.|.-|.-++. --...+|.|+||.+|.... ....||.|-..+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~----~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD----SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC----ccccCcCcccHHH
Confidence 46888877543 2335699999999997542 2457888876543
No 128
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.33 E-value=3 Score=42.35 Aligned_cols=57 Identities=25% Similarity=0.544 Sum_probs=41.0
Q ss_pred HHHHHHhcCC-CCCCCccccccc--CceecCCcccccHHHHhhhhcC------CCCCCCCCCCccc
Q 004295 643 EVVEELQKGE-QGECPICLEAFE--DAVLTPCAHRLCRECLLGSWKT------PTSGLCPVCRKTI 699 (763)
Q Consensus 643 ~~l~~l~~~~-~~eC~IC~~~~~--~~~it~C~H~fC~~Ci~~~~~~------~~~~~CP~Cr~~i 699 (763)
..++=+++.+ ...|..|..++. +.+-+-|.|.|--+|+.+.-.. .....||.|...|
T Consensus 39 SYLqWL~DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 39 SYLQWLQDSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred HHHHHHhhcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3444444433 478999998764 5667789999999999876532 2467899999864
No 129
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=1.7 Score=48.02 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCCCCcccc---cccCceecCCcccccHHHHhhhhcCCC-CCCCCCCCcccc
Q 004295 653 QGECPICLE---AFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~---~~~~~~it~C~H~fC~~Ci~~~~~~~~-~~~CP~Cr~~i~ 700 (763)
.+.|||-.+ .-+.|+-+.|||+.|++-+....+++. ..+||+|=...+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 478999877 335578899999999999988776543 589999965433
No 130
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=74.49 E-value=3.6 Score=41.24 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=21.7
Q ss_pred CceeecCCCCchHHHHHH-HHHhccc-----CCCCcccccC
Q 004295 401 GGILADAMGLGKTVMTIA-LLLTHSQ-----RGGLSGIQSA 435 (763)
Q Consensus 401 GGILADEMGLGKTIq~La-LI~~~~~-----~~~~l~v~p~ 435 (763)
+.+++-.-|.|||+..+. ++..... ....++++|.
T Consensus 38 ~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~ 78 (203)
T cd00268 38 DVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT 78 (203)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCC
Confidence 578888899999988433 3322221 1235677775
No 131
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=73.68 E-value=3.9 Score=30.91 Aligned_cols=40 Identities=25% Similarity=0.654 Sum_probs=21.2
Q ss_pred CCcccccccCceec---CCcccccHHHHhhhhcCCCCCCCCCC
Q 004295 656 CPICLEAFEDAVLT---PCAHRLCRECLLGSWKTPTSGLCPVC 695 (763)
Q Consensus 656 C~IC~~~~~~~~it---~C~H~fC~~Ci~~~~~~~~~~~CP~C 695 (763)
|.+|.+....-+.= .|.-.+-..|+..|++.....+||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 55666644333332 37666777899999998877799988
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=73.26 E-value=4.9 Score=48.56 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=57.0
Q ss_pred CChhhHHHHHhcCCCCCCccCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecc
Q 004295 305 ISDSDVDNIVGVGYSSEIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAF 384 (763)
Q Consensus 305 ~~~~~l~~l~~~~~~~~l~e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~ 384 (763)
.+..+++.+....+....+.++.|..-...+|.||.+|++-...-=. +
T Consensus 136 ~~~~~le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~---------------------~----------- 183 (875)
T COG4096 136 YSQEELEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFS---------------------K----------- 183 (875)
T ss_pred cCHHHHHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHh---------------------c-----------
Confidence 34557777776665555677888887888999999999998875311 0
Q ss_pred cCcccccCCcccccccCceeecCCCCchHHHHHHHHHhcccC
Q 004295 385 SGEATIEFPSTLQMARGGILADAMGLGKTVMTIALLLTHSQR 426 (763)
Q Consensus 385 sg~~s~~~P~~~~~~~GGILADEMGLGKTIq~LaLI~~~~~~ 426 (763)
.-+-.+|.-.-|-|||-++|++|......
T Consensus 184 -------------g~~raLlvMATGTGKTrTAiaii~rL~r~ 212 (875)
T COG4096 184 -------------GQNRALLVMATGTGKTRTAIAIIDRLIKS 212 (875)
T ss_pred -------------CCceEEEEEecCCCcceeHHHHHHHHHhc
Confidence 11127888889999999999999766543
No 133
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.45 E-value=1.7 Score=45.65 Aligned_cols=36 Identities=31% Similarity=0.658 Sum_probs=31.9
Q ss_pred CCCCCCcccccccCceecCC----cccccHHHHhhhhcCC
Q 004295 652 EQGECPICLEAFEDAVLTPC----AHRLCRECLLGSWKTP 687 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C----~H~fC~~Ci~~~~~~~ 687 (763)
....|-+|.+.+++.-+..| .|.||.-|-.++|+.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 34689999999999888888 8999999999999875
No 134
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=68.31 E-value=3.7 Score=45.42 Aligned_cols=33 Identities=27% Similarity=0.618 Sum_probs=24.9
Q ss_pred CcccccHHHHhhhhcCC-----------CCCCCCCCCccccccc
Q 004295 671 CAHRLCRECLLGSWKTP-----------TSGLCPVCRKTISRQD 703 (763)
Q Consensus 671 C~H~fC~~Ci~~~~~~~-----------~~~~CP~Cr~~i~~~~ 703 (763)
|..+.|.+|+..++... ....||+||+.+=..|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 78888999999887421 2577999999865444
No 135
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=67.90 E-value=0.89 Score=38.02 Aligned_cols=41 Identities=27% Similarity=0.636 Sum_probs=25.1
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..||.|..+|+-.. +|..|..|-.++.. .+.||.|..++..
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~---~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK---EAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE---EEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee---cccCCCcccHHHH
Confidence 47999998865432 78999999887654 6789999998764
No 136
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.99 E-value=2.7 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=27.2
Q ss_pred CCCCCCcccccc--cCceecCCcccccHHHHhhhh
Q 004295 652 EQGECPICLEAF--EDAVLTPCAHRLCRECLLGSW 684 (763)
Q Consensus 652 ~~~eC~IC~~~~--~~~~it~C~H~fC~~Ci~~~~ 684 (763)
....|.+|..++ ....+.+|+|.|-++|+....
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 458999999964 345688999999999998765
No 137
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=66.35 E-value=5 Score=38.99 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=37.8
Q ss_pred CCCCCCcccccccCceecCCcc-----cccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAH-----RLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H-----~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
...+|-||.+..+ +...||.= ..-.+|+..++.......|+.|+.+....
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4479999998654 34467632 33688999999988889999999986644
No 138
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.31 E-value=5.2 Score=33.40 Aligned_cols=45 Identities=24% Similarity=0.618 Sum_probs=30.8
Q ss_pred CCCCcccc--ccc--CceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLE--AFE--DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~--~~~--~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|.-|.. +.+ ++.|-.=.|.||.+|.+..+ .+.||+|+..+..+
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l----~g~CPnCGGelv~R 54 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRL----HGLCPNCGGELVAR 54 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh----cCcCCCCCchhhcC
Confidence 45666765 332 34444447899999998765 46899999876544
No 139
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=63.12 E-value=10 Score=29.15 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=34.8
Q ss_pred ccccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 3 TKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
..|+|++++..+.++-.++-+ -|||.|.+.+=|+-.|||-.+.
T Consensus 6 ~~vPedlI~q~q~VLqgksR~-vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKSRN-VIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-HH-HHHHHHHHTTT-HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCcHH-HHHHHHHHhcccHHHHHHHHhc
Confidence 468999999999999887765 5999999999999999997763
No 140
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=61.24 E-value=66 Score=32.85 Aligned_cols=45 Identities=18% Similarity=0.519 Sum_probs=32.7
Q ss_pred CCCCCCCccccc-ccCceecCCcccccHHHHhhhhcCCCCCCCCCCCc
Q 004295 651 GEQGECPICLEA-FEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (763)
Q Consensus 651 ~~~~eC~IC~~~-~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~ 697 (763)
..-.+|-+|..- +....--.|+-.+-..|+..|++. .+.||.|+.
T Consensus 179 dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d 224 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGD 224 (235)
T ss_pred HHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhc
Confidence 344789999984 443333457666778899999876 889999964
No 141
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=60.74 E-value=6.4 Score=42.00 Aligned_cols=49 Identities=24% Similarity=0.725 Sum_probs=32.7
Q ss_pred CCCCCcccc--cc-----------------cCceecCCcccccHHHHhhhhcC--------CCCCCCCCCCcccccc
Q 004295 653 QGECPICLE--AF-----------------EDAVLTPCAHRLCRECLLGSWKT--------PTSGLCPVCRKTISRQ 702 (763)
Q Consensus 653 ~~eC~IC~~--~~-----------------~~~~it~C~H~fC~~Ci~~~~~~--------~~~~~CP~Cr~~i~~~ 702 (763)
+.+||+|.. +. ..-.+.||+|+. .+--..||.. ...+.||.|-..+.-.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 479999986 21 112568999984 4445566643 2368899999887643
No 142
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.65 E-value=3.8 Score=47.64 Aligned_cols=36 Identities=33% Similarity=0.823 Sum_probs=27.9
Q ss_pred CCCCcccccc----cCceecCCcccccHHHHhhhhcCCCCCCCC
Q 004295 654 GECPICLEAF----EDAVLTPCAHRLCRECLLGSWKTPTSGLCP 693 (763)
Q Consensus 654 ~eC~IC~~~~----~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP 693 (763)
..|+||...+ -.|+...|+|..|+.|+..... ..||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC
Confidence 4699997633 4588899999999999987654 3577
No 143
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=60.38 E-value=4 Score=51.31 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=35.8
Q ss_pred CCCCCCcccc-ccc--CceecCCcccccHHHHhhhhcCC--------CCCCCCCCCcccccc
Q 004295 652 EQGECPICLE-AFE--DAVLTPCAHRLCRECLLGSWKTP--------TSGLCPVCRKTISRQ 702 (763)
Q Consensus 652 ~~~eC~IC~~-~~~--~~~it~C~H~fC~~Ci~~~~~~~--------~~~~CP~Cr~~i~~~ 702 (763)
.+..|-||.. .+. ..+.+.|+|+|...|....+++- .--.||.|..+|+..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3467888875 332 34568999999999987766542 135699999988753
No 144
>PHA02862 5L protein; Provisional
Probab=60.28 E-value=5.4 Score=38.03 Aligned_cols=50 Identities=14% Similarity=0.323 Sum_probs=38.0
Q ss_pred CCCCcccccccCceecCC-----cccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 654 GECPICLEAFEDAVLTPC-----AHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C-----~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
..|-||.+.-++. +.|| ......+|+..+++......|+.|+.+......
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 5799999875444 4676 334558999999988888999999998664433
No 145
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=60.01 E-value=22 Score=37.09 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=17.9
Q ss_pred CceeecCCCCchHHHHHHHHHhcccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQRG 427 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~~ 427 (763)
+.++==-||-|||-.++=++++...++
T Consensus 43 n~v~QlnMGeGKTsVI~Pmla~~LAdg 69 (229)
T PF12340_consen 43 NSVMQLNMGEGKTSVIVPMLALALADG 69 (229)
T ss_pred CeEeeecccCCccchHHHHHHHHHcCC
Confidence 456656799999977665555544433
No 146
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=59.97 E-value=6 Score=30.93 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=21.7
Q ss_pred CCCCcccccccCcee-cCCcccccHHH--HhhhhcCCCCCCCCCCCcc
Q 004295 654 GECPICLEAFEDAVL-TPCAHRLCREC--LLGSWKTPTSGLCPVCRKT 698 (763)
Q Consensus 654 ~eC~IC~~~~~~~~i-t~C~H~fC~~C--i~~~~~~~~~~~CP~Cr~~ 698 (763)
..||+....+.-|+- ..|.|.-|.+= ..++......-.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 479999999999886 56999988652 1222233345789999864
No 147
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.82 E-value=5 Score=35.99 Aligned_cols=31 Identities=26% Similarity=0.738 Sum_probs=24.7
Q ss_pred CCCCCCCcccccccCc--eecCCcccccHHHHh
Q 004295 651 GEQGECPICLEAFEDA--VLTPCAHRLCRECLL 681 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~--~it~C~H~fC~~Ci~ 681 (763)
.+...|++|..++... ++.||+|.+...|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3457899999987654 468999999999963
No 148
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=58.50 E-value=5.7 Score=34.18 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=32.9
Q ss_pred HHhhhhcccCCCC-ChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 9 VLSTVRSVVGPEF-SNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 9 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
-...++++||+.+ +...|..+|-.+..|+++||+..+..
T Consensus 31 ~l~~vr~~Lg~~~~~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 31 CLPQVREVLGDYVPPEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp HCCCHHHHCCCCC--CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 3467899999988 77889999999999999999999986
No 149
>PLN02436 cellulose synthase A
Probab=57.07 E-value=6.7 Score=48.81 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=36.5
Q ss_pred CCCCCCCccccccc-----Ccee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~-----~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.....|.||.+.+. ++-+ -.|+-..|+.|. +|-+......||.|++...+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchhh
Confidence 34468999999542 2222 247888999999 66666678899999998763
No 150
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=57.06 E-value=13 Score=41.52 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=58.5
Q ss_pred CCCcccccccCceecC-CcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHH
Q 004295 655 ECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKE 733 (763)
Q Consensus 655 eC~IC~~~~~~~~it~-C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~ 733 (763)
.|.|..+...+|++.+ .+|.|=+.-|+.|+.. .++||.-.++++..+|+++......+ +.++ +-+-|=+|+..
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e--~G~DPIt~~pLs~eelV~Ik~~~~v~--pk~~--satSIPalL~~ 75 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE--TGKDPITNEPLSIEELVEIKVPAQVR--PKPP--SATSIPALLKT 75 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHH--cCCCCCCCCcCCHHHeeecccccccc--CCCC--CccchHHHHHH
Confidence 5999999999999987 7999999999999874 68999999999999999875543322 2221 22237777777
Q ss_pred HHH
Q 004295 734 LEN 736 (763)
Q Consensus 734 L~~ 736 (763)
|++
T Consensus 76 lQd 78 (506)
T KOG0289|consen 76 LQD 78 (506)
T ss_pred HHH
Confidence 775
No 151
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.76 E-value=9.6 Score=43.77 Aligned_cols=55 Identities=24% Similarity=0.593 Sum_probs=40.2
Q ss_pred CCCCCCCcccccccC-ceecCCcccccHHHHhhhhcCC----CC--CCCC--CCCccccccccc
Q 004295 651 GEQGECPICLEAFED-AVLTPCAHRLCRECLLGSWKTP----TS--GLCP--VCRKTISRQDLI 705 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~-~~it~C~H~fC~~Ci~~~~~~~----~~--~~CP--~Cr~~i~~~~l~ 705 (763)
....+|.||.+.... .+...|+|.||..|...|+... .. -+|| .|...+....+.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 445799999997774 7778999999999999998542 12 3565 577766655543
No 152
>PRK10689 transcription-repair coupling factor; Provisional
Probab=53.18 E-value=25 Score=45.26 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=25.3
Q ss_pred cCceeecCCCCchHHHHHHHH-HhcccCCCCcccccCCCC
Q 004295 400 RGGILADAMGLGKTVMTIALL-LTHSQRGGLSGIQSASQP 438 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI-~~~~~~~~~l~v~p~sl~ 438 (763)
..-+++-++|.|||..++-.+ ........+++++|+..+
T Consensus 622 ~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 622 MDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 356888899999998765222 222223357788887544
No 153
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=52.87 E-value=14 Score=29.53 Aligned_cols=45 Identities=22% Similarity=0.651 Sum_probs=30.0
Q ss_pred CCCCcccccc--cC--ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAF--ED--AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~--~~--~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|-.|...+ +. +.|-+=.-.||.+|.+..+ ...||+|+..+..+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l----~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML----NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh----cCcCcCCCCccccC
Confidence 4677787633 33 3332224469999998876 46899999876543
No 154
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=50.76 E-value=14 Score=44.84 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=51.9
Q ss_pred cCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCC
Q 004295 331 LKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGL 410 (763)
Q Consensus 331 l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGL 410 (763)
.+.-.|+||..||.=+..+-... .| + ...++|++..--|-
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~-----------~~-----~------------------------~~~~~gli~~~TGs 274 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRK-----------TW-----G------------------------KDERGGLIWHTQGS 274 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhc-----------cc-----C------------------------CCCceeEEEEecCC
Confidence 44558999999999988763210 00 0 01358999999999
Q ss_pred chHHHHHHHHHhcc---cCCCCcccccCC-CCCCCCccccccc
Q 004295 411 GKTVMTIALLLTHS---QRGGLSGIQSAS-QPSDGGIEGYDIS 449 (763)
Q Consensus 411 GKTIq~LaLI~~~~---~~~~~l~v~p~s-l~~~w~~ei~~~~ 449 (763)
|||++|+.++.... ....+++++|.. |..+|..++..+.
T Consensus 275 GKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 275 GKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred CccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 99999998865532 223456666653 5556766655543
No 155
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.72 E-value=9.2 Score=47.75 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=36.5
Q ss_pred CCCCCCCccccccc-----Ccee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~-----~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.....|-||.+.+. ++-+ -.|+-..|+.|. +|-+......||.|++...+
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 34468999998542 2333 358888999999 66666667899999998663
No 156
>PLN02400 cellulose synthase
Probab=49.29 E-value=9.5 Score=47.67 Aligned_cols=50 Identities=26% Similarity=0.620 Sum_probs=36.3
Q ss_pred CCCCCCCccccccc-----Ccee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~-----~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.....|-||.+.+. ++-+ -.|+-..|+.|. +|-+......||.|++...+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCcccc
Confidence 34468999999543 2322 357888999999 56666667889999998663
No 157
>PLN02189 cellulose synthase
Probab=48.82 E-value=11 Score=46.87 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=36.3
Q ss_pred CCCCCCccccccc-----Ccee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~-----~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
....|.||.+.+. ++.+ -.|+-..|+.|. +|-+......||.|++...+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchhh
Confidence 3468999999643 2222 348888999999 66666678899999998764
No 158
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=15 Score=40.05 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=34.3
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
-.++++.|.+|=++..-+ ...+.|.++++|+|.|||+||....
T Consensus 6 ~~~lv~~fl~It~~~t~e-~A~q~L~~~~~~le~ai~Lffe~~~ 48 (356)
T KOG1364|consen 6 QRALVSKFLAITVQQTVE-IATQYLSAADWDLEAAINLFFEHGG 48 (356)
T ss_pred HHHHHHHHHHHhccccHH-HHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 357889999998865542 4666779999999999999999743
No 159
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=48.67 E-value=14 Score=44.68 Aligned_cols=60 Identities=25% Similarity=0.541 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHhcCCCCCCCcccccccC--cee--cCCcccccHHHHhhhhcC-----CCCCCCCCCCc
Q 004295 637 SRAYVQEVVEELQKGEQGECPICLEAFED--AVL--TPCAHRLCRECLLGSWKT-----PTSGLCPVCRK 697 (763)
Q Consensus 637 ~~~~~~~~l~~l~~~~~~eC~IC~~~~~~--~~i--t~C~H~fC~~Ci~~~~~~-----~~~~~CP~Cr~ 697 (763)
...+.+.+++.+. +..-||.||++.+.. ++. ..|.|+|-..||..|-+. +..-+||.|..
T Consensus 176 ~~~~~~~li~~l~-~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 176 DLTLTQSLIEQLS-NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hHHHHHHHHHHHh-cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3445566666654 555899999997754 333 459999999999988653 23568999984
No 160
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=48.12 E-value=20 Score=24.84 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=20.0
Q ss_pred ceeeeecCccceeEEeecccCcccccCC
Q 004295 366 WEAYRLLDERELVVYLNAFSGEATIEFP 393 (763)
Q Consensus 366 W~~~~~~~~~~~~~Y~N~~sg~~s~~~P 393 (763)
|+++.-++ .+..||+|..||+.+=+.|
T Consensus 5 W~~~~~~~-~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 5 WEEYFDPD-SGRPYYYNHETGESQWERP 31 (31)
T ss_dssp EEEEEETT-TSEEEEEETTTTEEESSST
T ss_pred CEEEEcCC-CCCEEEEeCCCCCEEeCCC
Confidence 87655444 5668999999998776655
No 161
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=47.24 E-value=41 Score=35.36 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=38.3
Q ss_pred CCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCC--CC
Q 004295 653 QGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPV--CR 696 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~--Cr 696 (763)
+..|||-..++..|++. .|+|+|-++-+..++.....-.||. |.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 47899999999999875 6999999999999988777888996 55
No 162
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=47.21 E-value=7 Score=30.12 Aligned_cols=40 Identities=30% Similarity=0.806 Sum_probs=24.4
Q ss_pred CCcccccc--cCceecCCc-----ccccHHHHhhhhcCCCCCCCCCC
Q 004295 656 CPICLEAF--EDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVC 695 (763)
Q Consensus 656 C~IC~~~~--~~~~it~C~-----H~fC~~Ci~~~~~~~~~~~CP~C 695 (763)
|-||.+.- +++.+.||. ...-.+|+..++.......|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67898743 336788873 24456788888876666778877
No 163
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=45.74 E-value=18 Score=30.85 Aligned_cols=50 Identities=26% Similarity=0.596 Sum_probs=20.0
Q ss_pred CCCCCCCccccccc-----Cce--ecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFE-----DAV--LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~-----~~~--it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.....|-||.+.+. ++. -..|+-..|+.|.+--.+ .....||.|+++..+
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCccc
Confidence 34568999998542 222 246899999999864443 346789999987654
No 164
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.68 E-value=11 Score=39.95 Aligned_cols=34 Identities=35% Similarity=0.784 Sum_probs=25.6
Q ss_pred CcccccHHHHhhhhcC-----------CCCCCCCCCCcccccccc
Q 004295 671 CAHRLCRECLLGSWKT-----------PTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 671 C~H~fC~~Ci~~~~~~-----------~~~~~CP~Cr~~i~~~~l 704 (763)
|..+.|++|+...+-. .....||+||+.+-..|+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 7888999999887621 246789999998665554
No 165
>PTZ00424 helicase 45; Provisional
Probab=44.07 E-value=27 Score=39.02 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=21.3
Q ss_pred ceeecCCCCchHHHHHHHHHhcc----cCCCCcccccCC
Q 004295 402 GILADAMGLGKTVMTIALLLTHS----QRGGLSGIQSAS 436 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~----~~~~~l~v~p~s 436 (763)
.|+.-..|-|||+..+-.++... .....++++|..
T Consensus 68 ~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 68 TIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred EEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 56777899999987643333221 122456777763
No 166
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=43.91 E-value=27 Score=33.39 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=22.7
Q ss_pred ceeecCCCCchHHHHHHHHHhccc---CCCCcccccC
Q 004295 402 GILADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSA 435 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~~---~~~~l~v~p~ 435 (763)
-|+.-..|-|||...+-.++.... ....++++|.
T Consensus 17 ~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~ 53 (169)
T PF00270_consen 17 VLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPT 53 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred EEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeec
Confidence 577778999999998755543332 2245666665
No 167
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=42.62 E-value=30 Score=31.29 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 724 STKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 724 SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
+.|+..+.+.+.+..+.+.|+|||.......+.+...|.
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~ 49 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLR 49 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHH
Confidence 379999999999876668999999999999888887774
No 168
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.85 E-value=21 Score=38.75 Aligned_cols=46 Identities=41% Similarity=0.905 Sum_probs=34.3
Q ss_pred CCCCccccccc--Ccee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFE--DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~--~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..|+||.++++ +... -+|++..|..|......+ ...||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~--~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG--DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc--CCCCCccCCcccc
Confidence 79999999763 2333 357999999998776544 7899999976543
No 169
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=41.56 E-value=12 Score=39.97 Aligned_cols=48 Identities=33% Similarity=0.637 Sum_probs=38.6
Q ss_pred CCCCCccccc----ccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 653 QGECPICLEA----FEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 653 ~~eC~IC~~~----~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
...||||.+. ...+...+|+|..-..|+.++.... -.||.|..+.++.
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~--y~CP~C~~~~d~~ 209 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG--YTCPICSKPGDMS 209 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC--CCCCcccchHHHH
Confidence 3569999983 4567789999999999999998765 8999998844433
No 170
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=41.12 E-value=21 Score=39.53 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=35.0
Q ss_pred CCCCcccc--cccCceecCCcccccHHHHhhhhcCC----------------------CCCCCCCCCccccccccccC
Q 004295 654 GECPICLE--AFEDAVLTPCAHRLCRECLLGSWKTP----------------------TSGLCPVCRKTISRQDLITA 707 (763)
Q Consensus 654 ~eC~IC~~--~~~~~~it~C~H~fC~~Ci~~~~~~~----------------------~~~~CP~Cr~~i~~~~l~~~ 707 (763)
.|||||+- +-.--.+--|....|.+|+...-... .-.+||.|.++-..-..+.+
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i 152 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKI 152 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeecc
Confidence 69999986 32233344689999999998643110 12589999887554444433
No 171
>PLN02195 cellulose synthase A
Probab=40.98 E-value=22 Score=44.17 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=35.7
Q ss_pred CCCCcccccc-----cCcee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAF-----EDAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~-----~~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..|-||.+.+ .++-+ -.|+-..|+.|. +|-+......||.|++....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 5899999843 23333 358888999999 66666667889999998773
No 172
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=40.84 E-value=9.1 Score=42.44 Aligned_cols=48 Identities=23% Similarity=0.735 Sum_probs=0.0
Q ss_pred CCCCCccccc--c-------c----------CceecCCcccccHHHHhhhhcC--------CCCCCCCCCCccccc
Q 004295 653 QGECPICLEA--F-------E----------DAVLTPCAHRLCRECLLGSWKT--------PTSGLCPVCRKTISR 701 (763)
Q Consensus 653 ~~eC~IC~~~--~-------~----------~~~it~C~H~fC~~Ci~~~~~~--------~~~~~CP~Cr~~i~~ 701 (763)
.-+||+|... . + .-.+.||+|+.-.+. ..||.. ...+.||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekT-a~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKT-AKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhh-hhhhhcCCCCCCcccccccCCcccCcccC
Confidence 3689999862 1 0 124678999955444 455532 235789999998874
No 173
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=39.32 E-value=25 Score=42.23 Aligned_cols=55 Identities=24% Similarity=0.598 Sum_probs=44.8
Q ss_pred CCCCCcccc--cccCceecCCccc-----ccHHHHhhhhcCCCCCCCCCCCccccccccccC
Q 004295 653 QGECPICLE--AFEDAVLTPCAHR-----LCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (763)
Q Consensus 653 ~~eC~IC~~--~~~~~~it~C~H~-----fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (763)
...|.||.. ..++|..-||.-. ..++|+.++.......+|-.|..++.-.+++..
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e 73 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKE 73 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeeccc
Confidence 368999975 6788998888532 347999999999999999999999887777643
No 174
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=38.76 E-value=32 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.732 Sum_probs=15.5
Q ss_pred cCCcccccHHHHhhhhcCCCCCCCCCCC
Q 004295 669 TPCAHRLCRECLLGSWKTPTSGLCPVCR 696 (763)
Q Consensus 669 t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr 696 (763)
..|.+.||.+|= .+-+..-..||-|.
T Consensus 25 ~~C~~~FC~dCD--~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCD--VFIHETLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHH--HTTTTTS-SSSTT-
T ss_pred CCCCCccccCcC--hhhhccccCCcCCC
Confidence 358999999994 44456678899884
No 175
>PRK01172 ski2-like helicase; Provisional
Probab=38.55 E-value=30 Score=41.89 Aligned_cols=36 Identities=14% Similarity=0.017 Sum_probs=23.8
Q ss_pred CceeecCCCCchHHHHHHHHHhccc-CCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ-RGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~-~~~~l~v~p~s 436 (763)
..|++-.-|-|||+.++-.|+.... ....+.++|..
T Consensus 39 nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~r 75 (674)
T PRK01172 39 NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLR 75 (674)
T ss_pred cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechH
Confidence 3688889999999987655443322 23456666763
No 176
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=18 Score=35.68 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=33.9
Q ss_pred CCCCCccccc-cc----Cce--ecCCcccccHHHHhhhhcCC---------CCCCCCCCCcccc
Q 004295 653 QGECPICLEA-FE----DAV--LTPCAHRLCRECLLGSWKTP---------TSGLCPVCRKTIS 700 (763)
Q Consensus 653 ~~eC~IC~~~-~~----~~~--it~C~H~fC~~Ci~~~~~~~---------~~~~CP~Cr~~i~ 700 (763)
...|.||+.- ++ +.+ -..|+..|..-|+.++++.- --+.||.|..|+.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 3679999862 22 221 24699999999999988642 1378999999876
No 177
>PF15616 TerY-C: TerY-C metal binding domain
Probab=37.69 E-value=21 Score=33.79 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=30.0
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..-||.|.....=+ +-.|++++|- .......||.|......
T Consensus 77 ~PgCP~CGn~~~fa-~C~CGkl~Ci-------~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 77 APGCPHCGNQYAFA-VCGCGKLFCI-------DGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCCcChhcEE-EecCCCEEEe-------CCCCCEECCCCCCeeee
Confidence 38999999754433 3479999993 34557899999987554
No 178
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=37.08 E-value=46 Score=40.06 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=27.8
Q ss_pred CceeecCCCCchHHHHHHHHHhcccC-CCCcccccCCCC-CCCCccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQR-GGLSGIQSASQP-SDGGIEGYD 447 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~-~~~l~v~p~sl~-~~w~~ei~~ 447 (763)
..+|.-+.|-|||+.++..++..... ...++++|+..+ .++...+.+
T Consensus 258 ~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 258 NRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHH
Confidence 35777789999999876544433222 346777777433 333333333
No 179
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.60 E-value=22 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.625 Sum_probs=23.1
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKT 698 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 698 (763)
...||.|.+.++.. .++.-|............||.|...
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 36799998854432 2334444444444446789999863
No 180
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=32.54 E-value=76 Score=40.03 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=24.7
Q ss_pred CceeecCCCCchHHHHHHHHHhc-ccCCCCcccccCCCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTH-SQRGGLSGIQSASQP 438 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~-~~~~~~l~v~p~sl~ 438 (763)
..+++=+.|-|||+.++-.+... .....+++++|+..+
T Consensus 474 d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~L 512 (926)
T TIGR00580 474 DRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLL 512 (926)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHH
Confidence 35777789999999876444322 222346778887543
No 181
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.91 E-value=28 Score=41.61 Aligned_cols=46 Identities=28% Similarity=0.670 Sum_probs=37.0
Q ss_pred CCCcccccccCceecCCcc-cccHHHHhhhhcCCC----CCCCCCCCcccc
Q 004295 655 ECPICLEAFEDAVLTPCAH-RLCRECLLGSWKTPT----SGLCPVCRKTIS 700 (763)
Q Consensus 655 eC~IC~~~~~~~~it~C~H-~fC~~Ci~~~~~~~~----~~~CP~Cr~~i~ 700 (763)
.|.||....+-...-.|+| ..|..|......... ...||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999999999889999999 999999987654433 456799998543
No 182
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=31.72 E-value=24 Score=27.31 Aligned_cols=32 Identities=38% Similarity=0.791 Sum_probs=21.3
Q ss_pred eecCC-cccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 667 VLTPC-AHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 667 ~it~C-~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
.+..| -|..|..|+...+.. ...||.|..++.
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~--s~~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSR--SDRCPICGKPLP 46 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SS--SSEETTTTEE--
T ss_pred CeeeecchhHHHHHHHHHhcc--ccCCCcccCcCc
Confidence 34455 799999999876653 688999998764
No 183
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=31.03 E-value=66 Score=40.43 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=25.9
Q ss_pred cCceeecCCCCchHHHHHHHHHhcccC---CCCcccccCC
Q 004295 400 RGGILADAMGLGKTVMTIALLLTHSQR---GGLSGIQSAS 436 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI~~~~~~---~~~l~v~p~s 436 (763)
.+--+.-+-|-|||.+++.+|...... ...++++|..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~ 99 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTP 99 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 344556677999999999988765543 2456777763
No 184
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.97 E-value=31 Score=43.25 Aligned_cols=48 Identities=19% Similarity=0.610 Sum_probs=35.5
Q ss_pred CCCCCccccccc-----Ccee--cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 653 QGECPICLEAFE-----DAVL--TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 653 ~~eC~IC~~~~~-----~~~i--t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
...|-||.+.+. ++-+ -.|+-..|+.|. +|-+......||.|++...+
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 368999998542 3333 358888999999 56555667889999998763
No 185
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=30.89 E-value=57 Score=32.71 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=11.1
Q ss_pred CCchHHHHhHHHHHhc
Q 004295 334 ELRPYQKQALHWMVQL 349 (763)
Q Consensus 334 ~LrpYQkqgl~WMl~r 349 (763)
+|-+.|++|+.-++..
T Consensus 1 ~ln~~Q~~Ai~~~~~~ 16 (236)
T PF13086_consen 1 KLNESQREAIQSALSS 16 (236)
T ss_dssp ---HHHHHHHHHHCTS
T ss_pred CCCHHHHHHHHHHHcC
Confidence 4778999999888764
No 186
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=30.51 E-value=46 Score=40.31 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.2
Q ss_pred CceeecCCCCchHHHHHHHHHhc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH 423 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~ 423 (763)
..|+|=-.|+|||..+.-.+..+
T Consensus 78 Ntii~lPTG~GKTfIAa~Vm~nh 100 (746)
T KOG0354|consen 78 NTIIALPTGSGKTFIAAVIMKNH 100 (746)
T ss_pred CeEEEeecCCCccchHHHHHHHH
Confidence 57999999999999886555433
No 187
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=30.42 E-value=33 Score=36.93 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=35.7
Q ss_pred CCCCcccc---cccCceecCCcccccHHHHhhhhcCCC-CCCCCCCCccccc
Q 004295 654 GECPICLE---AFEDAVLTPCAHRLCRECLLGSWKTPT-SGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~---~~~~~~it~C~H~fC~~Ci~~~~~~~~-~~~CP~Cr~~i~~ 701 (763)
..||.-.+ .-+.|+.+.|+|+.-++-+...-+++. ..+||.|-..-..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~ 388 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKY 388 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhh
Confidence 67887665 234578889999999999887766653 6889999654333
No 188
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=30.37 E-value=78 Score=25.74 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=34.9
Q ss_pred HHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCCC
Q 004295 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50 (763)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~~ 50 (763)
..++.++-|||. -|+-+|..-|..|+.|+..|++-.+...+|
T Consensus 7 k~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~qD~F 48 (60)
T PF06972_consen 7 KTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLSQDPF 48 (60)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHhcCcH
Confidence 467788899998 565688889999999999999988886444
No 189
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=30.08 E-value=22 Score=42.36 Aligned_cols=47 Identities=17% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeec
Q 004295 327 PPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILAD 406 (763)
Q Consensus 327 ~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILAD 406 (763)
.|..+...|-.+|.+-..||...|.+. .-|++|++
T Consensus 217 ~g~~~~kr~~el~~~~~~~~~~~~~~~---------------------------------------------i~~~~~~~ 251 (901)
T KOG4439|consen 217 KGARLIKRLQELDRELERRMQFGEADT---------------------------------------------IVGSTLIP 251 (901)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhh---------------------------------------------hccccccC
Confidence 345677788999999999999877632 34679999
Q ss_pred CCCCchHHHHHH
Q 004295 407 AMGLGKTVMTIA 418 (763)
Q Consensus 407 EMGLGKTIq~La 418 (763)
.|+++|+..+..
T Consensus 252 p~~~pk~~~~~~ 263 (901)
T KOG4439|consen 252 PPPLPKNLSMPI 263 (901)
T ss_pred CCCCCCCcCCCC
Confidence 999999987654
No 190
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.99 E-value=61 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=21.2
Q ss_pred ceeecCCCCchHHHHHHHHHhcccCCCCcccccCC
Q 004295 402 GILADAMGLGKTVMTIALLLTHSQRGGLSGIQSAS 436 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~s 436 (763)
.++.-.-|-|||+..+--++.. .+..+++.|+.
T Consensus 29 vlv~apTGsGKTl~y~lp~l~~--~~~~lVi~P~~ 61 (470)
T TIGR00614 29 CFVVMPTGGGKSLCYQLPALCS--DGITLVISPLI 61 (470)
T ss_pred EEEEcCCCCcHhHHHHHHHHHc--CCcEEEEecHH
Confidence 5777789999998654333322 33467777763
No 191
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.90 E-value=47 Score=34.74 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=40.4
Q ss_pred CCCCCcccccccCc----eecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCC
Q 004295 653 QGECPICLEAFEDA----VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (763)
Q Consensus 653 ~~eC~IC~~~~~~~----~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (763)
...|||-.-.|+.- .+-+|||+|-..-+.+. ....|+.|.+..+..|++-+.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI----KASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh----hhccccccCCcccccCeEeeC
Confidence 37899998888763 46689999987665543 357899999999999987653
No 192
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.68 E-value=17 Score=39.19 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCCCCcccccccCceec-----CCcccccHHHHhhhhcCCCCCCCCCCCcc
Q 004295 653 QGECPICLEAFEDAVLT-----PCAHRLCRECLLGSWKTPTSGLCPVCRKT 698 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it-----~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 698 (763)
...||+|.....-.++. .-.|.+|.-|-.++-- ....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~--~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF--VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee--cCCCCcCCCCC
Confidence 37999999854443332 2478899999877532 25689999875
No 193
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=28.97 E-value=63 Score=39.63 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=0.0
Q ss_pred CchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCchHH
Q 004295 335 LRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTV 414 (763)
Q Consensus 335 LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLGKTI 414 (763)
|+|||.|.+..+. ...|+|..=--|-|||+
T Consensus 69 lrpydVQlig~l~--------------------------------------------------l~~G~Iaem~TGeGKTL 98 (762)
T TIGR03714 69 MFPYDVQVLGAIV--------------------------------------------------LHQGNIAEMKTGEGKTL 98 (762)
T ss_pred CCccHHHHHHHHH--------------------------------------------------hcCCceeEecCCcchHH
Q ss_pred HHH-HHHHhcccCCCCcccccC
Q 004295 415 MTI-ALLLTHSQRGGLSGIQSA 435 (763)
Q Consensus 415 q~L-aLI~~~~~~~~~l~v~p~ 435 (763)
.++ ++++.......+++++|.
T Consensus 99 ta~Lpa~l~aL~g~~V~VVTpn 120 (762)
T TIGR03714 99 TATMPLYLNALTGKGAMLVTTN 120 (762)
T ss_pred HHHHHHHHHhhcCCceEEeCCC
No 194
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.87 E-value=23 Score=38.49 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCcccccccCceec------CCcccccHHHHhhhhcCCCCCCCCCCCcc
Q 004295 654 GECPICLEAFEDAVLT------PCAHRLCRECLLGSWKTPTSGLCPVCRKT 698 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it------~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~ 698 (763)
..||+|.....-.++. .=.+..|.-|-.++- -...+||.|...
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~--~~R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH--YVRVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc--ccCccCCCCCCC
Confidence 5999999854333221 235788888877653 236789999974
No 195
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.58 E-value=28 Score=37.87 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=29.8
Q ss_pred CCCCCcccccccCcee-----cCCcccccHHHHhhhhcCCCCCCCCCCCc
Q 004295 653 QGECPICLEAFEDAVL-----TPCAHRLCRECLLGSWKTPTSGLCPVCRK 697 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~i-----t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~ 697 (763)
...||+|.....-.++ -.=.|..|.-|-.++- -...+||.|..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~--~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH--VVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc--ccCccCCCCCC
Confidence 4799999985433332 2346778888877653 23678999997
No 196
>PF14353 CpXC: CpXC protein
Probab=27.73 E-value=1.5e+02 Score=27.58 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=47.5
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcC-CCCCCCCCCCccccccccccC-CCCCccccccccccccchhHHHHH
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKT-PTSGLCPVCRKTISRQDLITA-PTGSRFQVDIEKNWVESTKIAVLL 731 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~-~~~~~CP~Cr~~i~~~~l~~~-~~~~~~~~~~~~~~~~SsKi~aLl 731 (763)
..||.|...+.-.+.+.-.-..=.+=....+.. -....||.|+..+...--+-+ ..+.++-+....++..-..-.+++
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~~~~i~~~P~~~~~~~~~~~~ 81 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEKKFMIYYFPDNQDEEEQEQFL 81 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCCCEEEEEcCCcchHHHHHHHH
Confidence 469999886654333221111111111112211 135789999987654321111 122233333222222333333344
Q ss_pred HHHHH-----HhcCCCeEEEecCchhHHHHhh
Q 004295 732 KELEN-----LCLSGSKSILFSQWTAFLDLLQ 758 (763)
Q Consensus 732 ~~L~~-----l~~~~~KvVVFSQfts~LDlIe 758 (763)
..+.. ....+-.+-++..|-++.+-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~R~v~~~~~l~EKI~ 113 (128)
T PF14353_consen 82 GDLSQLKPEKPDFEGYRVRIVIDYNELREKIL 113 (128)
T ss_pred HhhccchhhcccccCceeEEeCCHHHHHHHHH
Confidence 33332 1112667777777777776654
No 197
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=26.31 E-value=86 Score=38.15 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=23.6
Q ss_pred ceeecCCCCchHHHHHHHHHhcccC-CCCcccccCCC
Q 004295 402 GILADAMGLGKTVMTIALLLTHSQR-GGLSGIQSASQ 437 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~~~-~~~l~v~p~sl 437 (763)
-+|.=+.|-|||+.++..++..... ...++.+|+..
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~ 321 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEI 321 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHH
Confidence 4666679999999877555433322 24677777743
No 198
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=25.93 E-value=48 Score=39.92 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHH---hcCCCeEEEecCch
Q 004295 724 STKIAVLLKELENL---CLSGSKSILFSQWT 751 (763)
Q Consensus 724 SsKi~aLl~~L~~l---~~~~~KvVVFSQft 751 (763)
-|=+++|++.+..+ ......++.+.+|.
T Consensus 130 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (645)
T PRK14559 130 PSPLEALLEQLEDLLNPLADPTEVLPTLLWQ 160 (645)
T ss_pred cCHHHHHHHHhhhhhhcccCcccccCccchh
Confidence 45577777776654 23345555555554
No 199
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=25.64 E-value=86 Score=35.98 Aligned_cols=36 Identities=19% Similarity=-0.019 Sum_probs=21.8
Q ss_pred CceeecCCCCchHHHHHHHHHhcccC----CCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQR----GGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~----~~~l~v~p~s 436 (763)
..|+.-.-|-|||...+-.++..... ...++++|+.
T Consensus 43 dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 43 DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 36777789999998754433332221 1356777764
No 200
>PRK00254 ski2-like helicase; Provisional
Probab=25.41 E-value=71 Score=39.10 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=23.5
Q ss_pred CceeecCCCCchHHHHH-HHHHhcc-cCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTI-ALLLTHS-QRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~L-aLI~~~~-~~~~~l~v~p~s 436 (763)
..|++-.-|-|||+.+. +++.... .....+.++|..
T Consensus 41 nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~ 78 (720)
T PRK00254 41 NLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLK 78 (720)
T ss_pred cEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChH
Confidence 46888899999999884 4333222 233566777764
No 201
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=25.22 E-value=70 Score=37.50 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.5
Q ss_pred CceeecCCCCchHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIAL 419 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaL 419 (763)
-.|+.-.-|-|||+..+--
T Consensus 160 dviv~ApTGSGKTlayllP 178 (518)
T PLN00206 160 SLLVSADTGSGKTASFLVP 178 (518)
T ss_pred CEEEEecCCCCccHHHHHH
Confidence 3677778999999876543
No 202
>PF12773 DZR: Double zinc ribbon
Probab=24.77 E-value=74 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=15.6
Q ss_pred cccHHHHhhhh-cCCCCCCCCCCCcccccc
Q 004295 674 RLCRECLLGSW-KTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 674 ~fC~~Ci~~~~-~~~~~~~CP~Cr~~i~~~ 702 (763)
.||..|=.... .......||.|+..+...
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENPPN 42 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCcCC
Confidence 35555543332 122356788888876544
No 203
>PRK04023 DNA polymerase II large subunit; Validated
Probab=24.71 E-value=52 Score=41.01 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCCCCcccccccCceecCCc-----ccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
...|+-|........=..|+ ..||.+|-.. .....||.|+..+....-
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~----~~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE----VEEDECEKCGREPTPYSK 678 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCc----CCCCcCCCCCCCCCccce
Confidence 36899998864322223376 4599999332 224679999987665443
No 204
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=24.32 E-value=1.1e+02 Score=38.22 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=17.0
Q ss_pred ceeecCCCCchHHHHHHHHHhcc
Q 004295 402 GILADAMGLGKTVMTIALLLTHS 424 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~ 424 (763)
=|+.=-+|-|||..-+--|+.+.
T Consensus 88 vvVtTgTgSGKTe~FllPIld~~ 110 (851)
T COG1205 88 VVVTTGTGSGKTESFLLPILDHL 110 (851)
T ss_pred EEEECCCCCchhHHHHHHHHHHH
Confidence 46777799999999766665443
No 205
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.92 E-value=43 Score=34.66 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=42.0
Q ss_pred CCCCCcccccccCcee-cCCcccccHHHHhhhhcCCCCCCCCC--CCcccccccc
Q 004295 653 QGECPICLEAFEDAVL-TPCAHRLCRECLLGSWKTPTSGLCPV--CRKTISRQDL 704 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~i-t~C~H~fC~~Ci~~~~~~~~~~~CP~--Cr~~i~~~~l 704 (763)
+..|||-..+..-|++ +.|.|.|=++-|..+.+......||. |.+....+.+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~ 243 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPY 243 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccch
Confidence 4789999999888877 56999999999999988777778885 8666665544
No 206
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.35 E-value=95 Score=37.20 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=21.4
Q ss_pred CceeecCCCCchHHHHHHHHHhcccCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~s 436 (763)
..++.=.-|-|||+..+--++.. .+.++++.|+.
T Consensus 42 dvlv~apTGsGKTl~y~lpal~~--~g~tlVisPl~ 75 (607)
T PRK11057 42 DCLVVMPTGGGKSLCYQIPALVL--DGLTLVVSPLI 75 (607)
T ss_pred CEEEEcCCCchHHHHHHHHHHHc--CCCEEEEecHH
Confidence 35676689999998654333322 34467777763
No 207
>PLN02248 cellulose synthase-like protein
Probab=21.77 E-value=57 Score=41.25 Aligned_cols=34 Identities=32% Similarity=0.981 Sum_probs=28.4
Q ss_pred cCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 669 TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 669 t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
-.|.+..|++|..+..+. .+.||-|.++....|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 148 CECGFKICRDCYIDAVKS--GGICPGCKEPYKVTDL 181 (1135)
T ss_pred ccccchhHHhHhhhhhhc--CCCCCCCccccccccc
Confidence 358999999999998876 7899999998765554
No 208
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=21.61 E-value=1.1e+02 Score=20.82 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=21.2
Q ss_pred ccceeeeecCccceeEEeecccCcccccCCc
Q 004295 364 PCWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (763)
Q Consensus 364 plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~ 394 (763)
+.|+...-.+ +..||+|..|++.+-+.|.
T Consensus 3 ~gW~~~~~~~--g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 3 PGWEERKDPD--GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCEEEECCC--CCEEEEECCCCCEEcCCCC
Confidence 4577665444 4579999999988877774
No 209
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=47 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=18.6
Q ss_pred ccHHHHhhhhc------CCCCCCCCCCCccc
Q 004295 675 LCRECLLGSWK------TPTSGLCPVCRKTI 699 (763)
Q Consensus 675 fC~~Ci~~~~~------~~~~~~CP~Cr~~i 699 (763)
.|.+|..+|-+ +.+...||.|+-.+
T Consensus 153 lC~~C~~EY~dP~nRRfHAQp~aCp~CGP~~ 183 (750)
T COG0068 153 LCPFCDKEYKDPLNRRFHAQPIACPKCGPHL 183 (750)
T ss_pred CCHHHHHHhcCccccccccccccCcccCCCe
Confidence 49999998864 23567899998753
No 210
>PRK02362 ski2-like helicase; Provisional
Probab=20.68 E-value=1.1e+02 Score=37.60 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=24.0
Q ss_pred CceeecCCCCchHHHHHHHHHh-cccCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLT-HSQRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~-~~~~~~~l~v~p~s 436 (763)
..|++=.-|-|||+.+.-.|+. ....+..++++|..
T Consensus 41 nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~r 77 (737)
T PRK02362 41 NLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLR 77 (737)
T ss_pred cEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChH
Confidence 4678888999999998544333 32334567777763
Done!