Query 004295
Match_columns 763
No_of_seqs 403 out of 1992
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 7.8E-32 2.7E-36 325.4 12.7 283 327-762 229-593 (800)
2 1z3i_X Similar to RAD54-like; 100.0 3.5E-31 1.2E-35 312.3 11.0 223 326-602 47-367 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3.5E-29 1.2E-33 286.3 13.9 272 321-762 25-362 (500)
4 1z5z_A Helicase of the SNF2/RA 99.6 3.8E-15 1.3E-19 157.1 10.9 121 519-762 13-133 (271)
5 3hgt_A HDA1 complex subunit 3; 99.4 4.6E-13 1.6E-17 142.7 13.2 125 537-762 20-146 (328)
6 3dmq_A RNA polymerase-associat 99.4 5.7E-13 1.9E-17 163.6 12.0 69 330-446 149-220 (968)
7 1wp9_A ATP-dependent RNA helic 99.1 3.5E-09 1.2E-13 118.0 20.3 49 401-449 25-76 (494)
8 2ecy_A TNF receptor-associated 98.8 2.1E-09 7.3E-14 87.9 4.0 53 652-705 14-66 (66)
9 2ysl_A Tripartite motif-contai 98.8 5.2E-09 1.8E-13 87.2 5.1 53 652-704 19-72 (73)
10 3lrq_A E3 ubiquitin-protein li 98.7 7.2E-09 2.5E-13 92.2 5.3 51 654-705 23-74 (100)
11 2djb_A Polycomb group ring fin 98.7 6E-09 2.1E-13 86.8 4.5 54 653-708 15-69 (72)
12 2egp_A Tripartite motif-contai 98.7 4.6E-09 1.6E-13 88.9 3.7 54 652-705 11-69 (79)
13 3ztg_A E3 ubiquitin-protein li 98.7 7.9E-09 2.7E-13 90.2 5.3 49 652-700 12-61 (92)
14 1t1h_A Gspef-atpub14, armadill 98.7 6.6E-09 2.3E-13 87.8 4.6 52 652-704 7-58 (78)
15 2d8t_A Dactylidin, ring finger 98.7 6.2E-09 2.1E-13 86.4 4.0 53 652-706 14-66 (71)
16 2xeu_A Ring finger protein 4; 98.7 4E-09 1.4E-13 85.3 2.6 53 652-706 2-61 (64)
17 2fwr_A DNA repair protein RAD2 98.7 1.4E-09 4.9E-14 122.7 -0.2 154 401-563 110-285 (472)
18 2yur_A Retinoblastoma-binding 98.7 5.5E-09 1.9E-13 87.6 3.3 51 653-703 15-66 (74)
19 2ecw_A Tripartite motif-contai 98.7 8.4E-09 2.9E-13 88.2 4.3 54 652-705 18-75 (85)
20 2y43_A E3 ubiquitin-protein li 98.7 1.8E-08 6.2E-13 89.3 6.0 68 654-740 23-91 (99)
21 2kre_A Ubiquitin conjugation f 98.7 1.1E-08 3.7E-13 91.1 4.5 52 652-705 28-79 (100)
22 3ng2_A RNF4, snurf, ring finge 98.7 6.5E-09 2.2E-13 86.0 2.7 53 651-705 8-67 (71)
23 2kr4_A Ubiquitin conjugation f 98.7 9.6E-09 3.3E-13 88.6 3.7 52 652-705 13-64 (85)
24 2ct2_A Tripartite motif protei 98.7 1.1E-08 3.8E-13 88.3 3.8 57 652-708 14-75 (88)
25 1jm7_A BRCA1, breast cancer ty 98.7 4.5E-08 1.5E-12 88.5 8.0 53 653-705 21-74 (112)
26 1wgm_A Ubiquitin conjugation f 98.7 1.5E-08 5.1E-13 89.8 4.6 52 652-705 21-73 (98)
27 2ecv_A Tripartite motif-contai 98.6 1.3E-08 4.5E-13 87.0 3.8 54 652-705 18-75 (85)
28 3fl2_A E3 ubiquitin-protein li 98.6 2.3E-08 8E-13 92.4 5.3 47 654-701 53-99 (124)
29 1e4u_A Transcriptional repress 98.6 2.4E-08 8.2E-13 84.6 4.7 53 652-705 10-66 (78)
30 1g25_A CDK-activating kinase a 98.6 2.1E-08 7.1E-13 81.7 4.1 52 653-705 3-59 (65)
31 4ayc_A E3 ubiquitin-protein li 98.6 2E-08 6.8E-13 94.7 3.9 46 654-701 54-99 (138)
32 2csy_A Zinc finger protein 183 98.6 2.4E-08 8.3E-13 85.0 3.7 47 652-700 14-60 (81)
33 1jm7_B BARD1, BRCA1-associated 98.6 1.4E-07 4.6E-12 86.3 8.4 48 653-704 22-70 (117)
34 2ckl_B Ubiquitin ligase protei 98.5 4.2E-08 1.4E-12 95.3 5.0 48 654-702 55-103 (165)
35 2ect_A Ring finger protein 126 98.5 4.4E-08 1.5E-12 82.7 4.5 55 652-708 14-71 (78)
36 2ea6_A Ring finger protein 4; 98.5 2.6E-08 8.9E-13 81.7 2.7 48 652-701 14-68 (69)
37 1z6u_A NP95-like ring finger p 98.5 8.1E-08 2.8E-12 91.9 6.1 48 654-702 79-126 (150)
38 2ecm_A Ring finger and CHY zin 98.5 4.1E-08 1.4E-12 76.9 3.0 47 652-700 4-54 (55)
39 2ysj_A Tripartite motif-contai 98.5 7E-08 2.4E-12 78.0 4.4 44 652-695 19-63 (63)
40 2ecn_A Ring finger protein 141 98.5 4.3E-08 1.5E-12 81.0 3.1 50 652-704 14-63 (70)
41 2l1i_A HLTF protein; hiran dom 98.5 1.1E-08 3.8E-13 93.8 -0.6 101 94-218 7-109 (122)
42 2c2l_A CHIP, carboxy terminus 98.5 4.1E-08 1.4E-12 103.0 3.2 52 653-705 208-259 (281)
43 2yu4_A E3 SUMO-protein ligase 98.5 5.5E-08 1.9E-12 85.5 3.1 54 652-705 6-67 (94)
44 2f42_A STIP1 homology and U-bo 98.5 5.5E-08 1.9E-12 95.2 3.2 52 653-705 106-157 (179)
45 2ecj_A Tripartite motif-contai 98.4 1.2E-07 4.2E-12 74.9 4.4 44 652-695 14-58 (58)
46 1iym_A EL5; ring-H2 finger, ub 98.4 1.3E-07 4.3E-12 74.1 4.3 47 652-700 4-54 (55)
47 1bor_A Transcription factor PM 98.4 6.9E-08 2.4E-12 76.3 2.7 45 652-701 5-49 (56)
48 2ckl_A Polycomb group ring fin 98.4 1E-07 3.5E-12 85.8 4.0 49 652-702 14-63 (108)
49 1v87_A Deltex protein 2; ring- 98.4 5.4E-08 1.8E-12 88.4 2.2 51 652-702 24-95 (114)
50 1chc_A Equine herpes virus-1 r 98.4 9.1E-08 3.1E-12 78.4 3.1 48 652-701 4-52 (68)
51 3hct_A TNF receptor-associated 98.4 7.4E-08 2.5E-12 88.2 2.6 52 653-705 18-69 (118)
52 1rmd_A RAG1; V(D)J recombinati 98.4 1.1E-07 3.9E-12 86.6 3.7 51 654-705 24-74 (116)
53 3l11_A E3 ubiquitin-protein li 98.4 1.2E-07 4.2E-12 86.3 3.3 47 654-701 16-62 (115)
54 4a2w_A RIG-I, retinoic acid in 98.4 7.2E-07 2.5E-11 109.3 11.1 41 722-762 610-652 (936)
55 2kiz_A E3 ubiquitin-protein li 98.4 1.8E-07 6.3E-12 76.8 3.7 48 652-701 13-63 (69)
56 2ecg_A Baculoviral IAP repeat- 98.3 8.4E-07 2.9E-11 74.4 7.0 42 654-701 26-68 (75)
57 2ep4_A Ring finger protein 24; 98.3 2.8E-07 9.6E-12 76.8 4.1 49 652-702 14-65 (74)
58 2l0b_A E3 ubiquitin-protein li 98.3 2.1E-07 7.3E-12 81.1 3.4 48 652-701 39-89 (91)
59 1x4j_A Ring finger protein 38; 98.3 1.5E-07 5E-12 78.9 2.2 48 652-701 22-72 (75)
60 3htk_C E3 SUMO-protein ligase 98.3 2.3E-07 7.9E-12 95.2 3.6 54 652-705 180-236 (267)
61 2y1n_A E3 ubiquitin-protein li 98.3 2.3E-07 7.9E-12 101.0 3.8 54 653-707 332-385 (389)
62 4ic3_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 75.9 4.4 43 654-702 25-68 (74)
63 4a2p_A RIG-I, retinoic acid in 98.3 1.4E-06 4.8E-11 99.6 9.3 41 722-762 369-411 (556)
64 4ap4_A E3 ubiquitin ligase RNF 98.2 4.3E-07 1.5E-11 84.2 3.5 53 652-706 6-65 (133)
65 2vje_A E3 ubiquitin-protein li 98.2 4.6E-07 1.6E-11 73.7 3.0 49 650-700 5-56 (64)
66 2ecl_A Ring-box protein 2; RNF 98.2 8.6E-07 2.9E-11 75.5 4.2 50 652-703 14-78 (81)
67 2vje_B MDM4 protein; proto-onc 98.2 6.1E-07 2.1E-11 72.7 2.9 47 653-701 7-56 (63)
68 2yho_A E3 ubiquitin-protein li 98.2 1.3E-06 4.6E-11 74.0 4.9 43 654-702 19-62 (79)
69 2bay_A PRE-mRNA splicing facto 98.2 7.5E-07 2.6E-11 71.7 2.8 54 653-708 3-57 (61)
70 4a2q_A RIG-I, retinoic acid in 98.2 1.9E-06 6.5E-11 103.8 7.6 41 722-762 610-652 (797)
71 3knv_A TNF receptor-associated 98.1 3.3E-07 1.1E-11 86.7 0.5 49 652-701 30-78 (141)
72 3hcs_A TNF receptor-associated 98.1 7.1E-07 2.4E-11 87.0 2.6 52 653-705 18-69 (170)
73 2ea5_A Cell growth regulator w 98.1 1.7E-06 5.7E-11 71.2 4.0 45 651-701 13-58 (68)
74 4ap4_A E3 ubiquitin ligase RNF 98.0 1.6E-06 5.6E-11 80.2 2.2 53 651-705 70-129 (133)
75 1wim_A KIAA0161 protein; ring 98.0 1.2E-06 4.3E-11 76.6 0.9 53 652-704 4-69 (94)
76 3dpl_R Ring-box protein 1; ubi 97.9 7E-06 2.4E-10 73.6 4.6 47 652-700 36-100 (106)
77 3t6p_A Baculoviral IAP repeat- 97.8 9.2E-06 3.1E-10 87.8 4.2 52 642-701 286-338 (345)
78 3k2y_A Uncharacterized protein 97.7 4E-05 1.4E-09 68.7 6.1 77 96-193 6-87 (109)
79 2d8s_A Cellular modulator of i 97.7 2.5E-05 8.4E-10 66.3 4.0 52 652-703 14-72 (80)
80 1rif_A DAR protein, DNA helica 97.6 4.9E-05 1.7E-09 79.6 5.6 41 333-423 112-152 (282)
81 4a0k_B E3 ubiquitin-protein li 97.6 1.2E-05 4.1E-10 73.2 0.4 48 652-701 47-112 (117)
82 2fz4_A DNA repair protein RAD2 97.4 5.8E-05 2E-09 77.3 2.5 66 330-447 89-155 (237)
83 3h1t_A Type I site-specific re 97.1 0.00033 1.1E-08 81.2 4.8 72 332-448 176-259 (590)
84 2oca_A DAR protein, ATP-depend 97.0 0.0006 2.1E-08 77.3 5.7 67 332-448 111-180 (510)
85 3tbk_A RIG-I helicase domain; 96.9 0.00095 3.3E-08 75.7 6.6 40 723-762 369-410 (555)
86 2ykg_A Probable ATP-dependent 96.9 0.00019 6.5E-09 84.6 0.7 50 400-449 29-85 (696)
87 4gl2_A Interferon-induced heli 96.7 0.00037 1.3E-08 82.2 1.6 50 401-450 24-82 (699)
88 2ct0_A Non-SMC element 1 homol 96.7 0.0019 6.5E-08 53.7 5.4 49 652-700 14-63 (74)
89 3vk6_A E3 ubiquitin-protein li 96.6 0.0011 3.9E-08 57.5 3.4 47 655-702 3-50 (101)
90 3b6e_A Interferon-induced heli 96.6 0.0019 6.4E-08 63.8 5.2 23 401-423 50-72 (216)
91 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.00049 1.7E-08 72.9 0.6 50 652-701 307-373 (381)
92 1vyx_A ORF K3, K3RING; zinc-bi 96.3 0.0013 4.5E-08 52.4 1.9 50 651-700 4-58 (60)
93 1xti_A Probable ATP-dependent 96.2 0.005 1.7E-07 66.5 6.7 23 401-423 47-69 (391)
94 1v92_A NSFL1 cofactor P47; 3-h 96.0 0.0028 9.7E-08 47.4 2.3 41 6-48 5-45 (46)
95 1hv8_A Putative ATP-dependent 95.9 0.01 3.4E-07 63.2 6.8 23 401-423 46-68 (367)
96 2gxq_A Heat resistant RNA depe 95.6 0.015 5.3E-07 56.9 6.6 23 401-423 40-62 (207)
97 2z0m_A 337AA long hypothetical 95.5 0.0099 3.4E-07 62.5 5.1 46 401-448 33-79 (337)
98 1fuu_A Yeast initiation factor 95.5 0.012 4.2E-07 63.4 5.9 22 401-422 60-81 (394)
99 2dal_A Protein KIAA0794; FAS a 95.4 0.0085 2.9E-07 48.0 3.1 43 6-50 15-57 (62)
100 2dam_A ETEA protein; KIAA0887, 94.9 0.012 4.2E-07 47.8 2.7 42 6-49 18-60 (67)
101 2j0s_A ATP-dependent RNA helic 94.8 0.023 8E-07 61.8 5.5 48 401-448 76-128 (410)
102 1qde_A EIF4A, translation init 94.8 0.045 1.5E-06 54.3 7.1 21 401-421 53-73 (224)
103 1t6n_A Probable ATP-dependent 94.8 0.026 8.9E-07 56.0 5.3 47 401-447 53-104 (220)
104 1s2m_A Putative ATP-dependent 94.6 0.028 9.4E-07 60.9 5.4 48 401-448 60-112 (400)
105 2w00_A HSDR, R.ECOR124I; ATP-b 94.3 0.042 1.4E-06 67.6 6.5 48 399-446 300-351 (1038)
106 2pl3_A Probable ATP-dependent 94.2 0.038 1.3E-06 55.5 5.1 47 401-447 64-119 (236)
107 1wji_A Tudor domain containing 94.2 0.041 1.4E-06 44.1 4.1 43 4-49 7-49 (63)
108 2oxc_A Probable ATP-dependent 94.2 0.073 2.5E-06 53.3 7.0 21 401-421 63-83 (230)
109 3pey_A ATP-dependent RNA helic 94.2 0.041 1.4E-06 59.1 5.4 47 400-446 45-96 (395)
110 2dzl_A Protein FAM100B; UBA-li 93.9 0.048 1.6E-06 44.2 3.9 41 8-50 19-59 (66)
111 3eiq_A Eukaryotic initiation f 93.1 0.066 2.3E-06 58.1 4.9 48 401-448 79-131 (414)
112 3nw0_A Non-structural maintena 93.1 0.12 4E-06 52.7 6.4 166 505-701 46-229 (238)
113 1vec_A ATP-dependent RNA helic 93.0 0.094 3.2E-06 51.2 5.3 36 401-436 42-81 (206)
114 2eyq_A TRCF, transcription-rep 92.8 0.049 1.7E-06 68.0 3.7 75 330-449 599-676 (1151)
115 1q0u_A Bstdead; DEAD protein, 92.7 0.084 2.9E-06 52.3 4.5 46 401-446 43-93 (219)
116 1vg5_A RSGI RUH-014, rhomboid 92.2 0.1 3.5E-06 43.0 3.5 44 5-48 25-68 (73)
117 3ber_A Probable ATP-dependent 92.1 0.15 5.1E-06 51.9 5.6 45 401-445 82-131 (249)
118 1wrb_A DJVLGB; RNA helicase, D 91.7 0.16 5.4E-06 51.5 5.2 46 401-446 62-121 (253)
119 1ify_A HHR23A, UV excision rep 91.3 0.13 4.4E-06 39.0 3.0 39 9-47 8-46 (49)
120 3bor_A Human initiation factor 91.2 0.14 4.8E-06 51.5 4.2 45 401-445 69-118 (237)
121 1z96_A DNA-damage, UBA-domain 91.0 0.15 5.2E-06 36.5 3.1 36 7-45 5-40 (40)
122 2knz_A Ubiquilin-4; cytoplasm, 90.6 0.23 8E-06 38.2 3.9 41 8-48 10-51 (53)
123 1ufz_A Hypothetical protein BA 90.4 0.2 6.9E-06 41.9 3.6 38 10-47 38-75 (83)
124 1dv0_A DNA repair protein HHR2 90.2 0.23 7.9E-06 37.2 3.5 38 12-49 7-44 (47)
125 2g3q_A Protein YBL047C; endocy 89.6 0.28 9.5E-06 35.9 3.5 39 6-47 4-42 (43)
126 2jy5_A Ubiquilin-1; UBA, alter 89.5 0.21 7E-06 38.4 2.8 37 12-48 15-52 (52)
127 2db3_A ATP-dependent RNA helic 89.4 0.38 1.3E-05 53.1 6.1 21 401-421 95-115 (434)
128 3fht_A ATP-dependent RNA helic 88.8 0.34 1.2E-05 52.2 5.1 36 401-436 66-105 (412)
129 2bwb_A Ubiquitin-like protein 88.2 0.3 1E-05 36.5 2.8 36 9-47 10-46 (46)
130 3e21_A HFAF1, FAS-associated f 87.1 0.36 1.2E-05 35.9 2.6 40 5-45 4-43 (45)
131 1wj7_A Hypothetical protein (R 87.0 0.34 1.2E-05 42.5 2.9 42 8-49 38-80 (104)
132 3iuy_A Probable ATP-dependent 86.3 0.64 2.2E-05 46.0 5.0 21 401-421 59-79 (228)
133 2jun_A Midline-1; B-BOX, TRIM, 86.2 0.35 1.2E-05 42.0 2.6 32 653-684 3-37 (101)
134 1wiv_A UBP14, ubiquitin-specif 85.9 0.51 1.7E-05 38.9 3.2 44 3-49 26-69 (73)
135 3dkp_A Probable ATP-dependent 85.7 0.78 2.7E-05 46.0 5.3 36 401-436 68-108 (245)
136 2juj_A E3 ubiquitin-protein li 84.5 0.96 3.3E-05 34.6 3.8 41 6-46 4-44 (56)
137 1wr1_B Ubiquitin-like protein 83.4 0.51 1.7E-05 37.1 2.0 37 9-48 20-57 (58)
138 2dna_A Unnamed protein product 83.0 0.88 3E-05 36.7 3.3 27 24-50 35-61 (67)
139 2cpw_A CBL-interacting protein 82.9 1.3 4.4E-05 35.4 4.3 42 5-49 18-60 (64)
140 2dak_A Ubiquitin carboxyl-term 82.6 0.54 1.8E-05 37.5 1.9 42 3-47 6-47 (63)
141 3oiy_A Reverse gyrase helicase 82.5 0.88 3E-05 49.4 4.3 48 401-448 38-87 (414)
142 2xgj_A ATP-dependent RNA helic 82.2 0.97 3.3E-05 55.5 5.0 68 329-446 81-150 (1010)
143 1wgl_A TOLL-interacting protei 82.1 1.1 3.7E-05 35.3 3.5 43 4-47 7-49 (59)
144 2dai_A Ubadc1, ubiquitin assoc 82.0 1.9 6.4E-05 36.4 5.2 41 4-47 27-67 (83)
145 1vej_A Riken cDNA 4931431F19; 81.9 0.71 2.4E-05 38.0 2.5 38 9-49 32-70 (74)
146 2oo9_A E3 ubiquitin-protein li 81.7 1.2 4.2E-05 32.7 3.3 39 8-46 3-41 (46)
147 2i4i_A ATP-dependent RNA helic 81.5 0.84 2.9E-05 49.3 3.7 20 401-420 54-73 (417)
148 3fmp_B ATP-dependent RNA helic 81.4 1.2 4.2E-05 49.4 5.1 36 401-436 133-172 (479)
149 2crn_A Ubash3A protein; compac 80.2 1.2 4.1E-05 35.6 3.2 41 5-48 8-49 (64)
150 2dag_A Ubiquitin carboxyl-term 79.7 1.2 4.1E-05 36.7 3.1 43 4-49 7-50 (74)
151 3fho_A ATP-dependent RNA helic 79.6 0.58 2E-05 52.8 1.6 47 401-447 160-211 (508)
152 3fe2_A Probable ATP-dependent 79.2 1.9 6.5E-05 43.1 5.2 21 401-421 68-88 (242)
153 3sqw_A ATP-dependent RNA helic 78.8 1.2 4.3E-05 50.8 4.1 47 401-447 62-117 (579)
154 2ekk_A UBA domain from E3 ubiq 77.8 1.4 4.9E-05 32.7 2.8 41 4-48 7-47 (47)
155 1gm5_A RECG; helicase, replica 77.2 1.8 6.3E-05 51.5 5.0 48 401-448 391-440 (780)
156 1veg_A NEDD8 ultimate buster-1 77.0 1.8 6.3E-05 36.4 3.5 42 5-49 28-69 (83)
157 1whc_A RSGI RUH-027, UBA/UBX 3 76.2 1.9 6.6E-05 34.4 3.3 43 4-49 7-50 (64)
158 2d9s_A CBL E3 ubiquitin protei 76.0 1.4 4.8E-05 33.6 2.2 40 7-46 7-46 (53)
159 2dah_A Ubiquilin-3; UBA domain 75.9 1 3.5E-05 34.7 1.6 40 7-49 10-50 (54)
160 3i5x_A ATP-dependent RNA helic 75.8 1.7 5.8E-05 49.3 4.1 47 401-447 113-168 (563)
161 2ooa_A E3 ubiquitin-protein li 75.8 1.7 6E-05 32.9 2.7 36 10-45 12-47 (52)
162 3ly5_A ATP-dependent RNA helic 75.8 2.6 8.8E-05 42.9 5.1 35 401-435 93-135 (262)
163 2cs3_A Protein C14ORF4, MY039 75.7 1.1 3.8E-05 37.0 1.8 45 651-695 13-64 (93)
164 1wgn_A UBAP1, ubiquitin associ 74.7 1.2 4.3E-05 34.9 1.7 38 12-49 22-59 (63)
165 3i2d_A E3 SUMO-protein ligase 74.6 3.1 0.0001 44.7 5.4 53 653-705 249-304 (371)
166 2p6r_A Afuhel308 helicase; pro 74.2 1 3.5E-05 52.9 1.7 36 401-436 42-78 (702)
167 1vek_A UBP14, ubiquitin-specif 71.7 4.9 0.00017 33.8 4.9 42 4-48 27-69 (84)
168 2cwb_A Chimera of immunoglobul 69.4 2.3 7.9E-05 37.6 2.5 26 24-49 82-107 (108)
169 3tbk_A RIG-I helicase domain; 68.7 3 0.0001 46.6 3.9 49 401-449 21-76 (555)
170 1oyw_A RECQ helicase, ATP-depe 68.0 2.3 7.9E-05 48.1 2.8 33 401-435 42-74 (523)
171 3m62_A Ubiquitin conjugation f 67.4 3.3 0.00011 49.8 4.0 51 653-705 891-942 (968)
172 3l9o_A ATP-dependent RNA helic 66.5 3.7 0.00013 50.9 4.3 36 401-436 201-237 (1108)
173 2dkl_A Trinucleotide repeat co 65.7 3.4 0.00012 34.9 2.6 43 5-50 20-62 (85)
174 2zj8_A DNA helicase, putative 65.4 2.3 7.9E-05 50.0 2.2 36 401-436 41-78 (720)
175 2qho_B E3 ubiquitin-protein li 64.8 7 0.00024 29.1 3.8 43 3-46 6-48 (53)
176 2v1x_A ATP-dependent DNA helic 63.3 4.1 0.00014 46.9 3.7 33 401-435 61-93 (591)
177 2va8_A SSO2462, SKI2-type heli 62.9 3.2 0.00011 48.7 2.8 36 401-436 48-85 (715)
178 2jgn_A DBX, DDX3, ATP-dependen 61.1 6.2 0.00021 37.8 4.0 39 723-762 29-67 (185)
179 4a4z_A Antiviral helicase SKI2 59.7 7.6 0.00026 47.6 5.3 36 401-436 56-92 (997)
180 1oqy_A HHR23A, UV excision rep 59.2 4.8 0.00016 43.5 3.0 41 8-48 167-207 (368)
181 2di0_A Activating signal coint 59.1 11 0.00039 30.5 4.5 40 7-47 14-53 (71)
182 2lbm_A Transcriptional regulat 59.0 16 0.00053 33.9 6.1 71 651-741 61-140 (142)
183 2lbc_A Ubiquitin carboxyl-term 56.5 6.3 0.00021 35.7 2.9 42 5-49 77-118 (126)
184 1otr_A Protein CUE2; protein-p 56.3 9.3 0.00032 28.7 3.3 24 24-47 21-44 (49)
185 1e0l_A Formin binding protein; 53.9 11 0.00038 26.4 3.2 31 362-394 4-34 (37)
186 4fo9_A E3 SUMO-protein ligase 53.6 7.7 0.00026 41.5 3.4 70 654-723 216-298 (360)
187 2hjv_A ATP-dependent RNA helic 52.7 12 0.00042 34.7 4.4 39 722-762 18-56 (163)
188 2cp9_A EF-TS, EF-TSMT, elongat 51.2 12 0.00042 29.8 3.4 40 4-45 7-46 (64)
189 2ysi_A Transcription elongatio 49.3 16 0.00054 26.1 3.4 31 362-394 8-38 (40)
190 1weo_A Cellulose synthase, cat 49.1 17 0.00059 30.7 4.1 50 651-701 14-70 (93)
191 2dhy_A CUE domain-containing p 48.8 12 0.0004 30.1 3.0 39 7-46 19-57 (67)
192 4ae4_A Ubiquitin-associated pr 47.8 12 0.00042 33.5 3.3 45 2-46 1-45 (118)
193 3bq3_A Defective in cullin ned 46.8 8.1 0.00028 39.8 2.2 42 6-49 15-56 (270)
194 4b3f_X DNA-binding protein smu 46.0 30 0.001 39.9 7.2 60 327-435 182-242 (646)
195 2p6n_A ATP-dependent RNA helic 45.4 13 0.00045 35.7 3.4 37 723-762 39-75 (191)
196 1ywi_A Formin-binding protein 44.9 13 0.00046 26.6 2.5 31 362-394 10-40 (41)
197 2ko5_A Ring finger protein Z; 43.7 13 0.00045 31.7 2.6 46 654-702 29-74 (99)
198 1z60_A TFIIH basal transcripti 43.1 18 0.0006 28.3 3.1 40 654-695 16-58 (59)
199 1e0n_A Hypothetical protein; Y 40.4 14 0.00049 24.0 1.9 26 365-393 2-27 (27)
200 2jne_A Hypothetical protein YF 39.6 3.5 0.00012 35.4 -1.5 41 654-701 33-73 (101)
201 3fmo_B ATP-dependent RNA helic 38.9 31 0.0011 35.6 5.3 35 401-435 133-171 (300)
202 2zp2_A Kinase A inhibitor; KIP 36.8 26 0.0009 32.3 3.8 36 90-125 91-128 (141)
203 2ykg_A Probable ATP-dependent 33.9 30 0.001 39.9 4.7 40 723-762 378-419 (696)
204 1e0m_A Wwprototype; SH3 protot 31.8 39 0.0013 23.2 3.2 32 362-395 4-35 (37)
205 2lbc_A Ubiquitin carboxyl-term 31.2 30 0.001 31.1 3.2 40 5-47 2-42 (126)
206 1vdl_A Ubiquitin carboxyl-term 30.9 63 0.0022 26.3 4.5 39 9-48 27-65 (80)
207 3mml_B Allophanate hydrolase s 30.6 29 0.00098 34.8 3.2 32 92-123 192-225 (228)
208 2rgt_A Fusion of LIM/homeobox 29.2 45 0.0015 31.3 4.2 47 653-703 33-79 (169)
209 3llm_A ATP-dependent RNA helic 29.2 47 0.0016 32.6 4.6 17 333-349 60-76 (235)
210 1m3v_A FLIN4, fusion of the LI 28.4 35 0.0012 30.2 3.1 50 654-705 33-85 (122)
211 2phc_B Uncharacterized protein 28.4 32 0.0011 34.3 3.1 34 92-125 176-211 (225)
212 2ysh_A GAS-7, growth-arrest-sp 27.5 56 0.0019 22.9 3.4 33 360-394 6-38 (40)
213 2jtn_A LIM domain-binding prot 27.1 45 0.0015 31.7 3.8 16 689-704 119-134 (182)
214 2cp8_A NEXT to BRCA1 gene 1 pr 26.5 25 0.00085 27.0 1.4 23 25-47 26-48 (54)
215 2dk1_A WW domain-binding prote 26.1 32 0.0011 25.9 2.0 30 364-395 7-36 (50)
216 4g9i_A Hydrogenase maturation 24.7 28 0.00095 41.2 2.2 26 675-700 158-189 (772)
217 2pv0_B DNA (cytosine-5)-methyl 24.3 56 0.0019 35.2 4.2 48 651-698 91-148 (386)
218 4ddu_A Reverse gyrase; topoiso 24.2 58 0.002 40.2 4.9 34 402-435 96-130 (1104)
219 2dk7_A Transcription elongatio 24.1 49 0.0017 26.9 2.8 30 364-395 20-49 (73)
220 4gl2_A Interferon-induced heli 23.9 20 0.00067 41.5 0.7 40 723-762 379-421 (699)
221 2fiy_A Protein FDHE homolog; F 23.7 20 0.00069 37.6 0.6 53 653-708 182-240 (309)
222 2xqn_T Testin, TESS; metal-bin 23.6 56 0.0019 28.8 3.5 45 654-702 31-76 (126)
223 3crv_A XPD/RAD3 related DNA he 21.7 64 0.0022 36.3 4.4 33 402-436 25-57 (551)
224 3a1b_A DNA (cytosine-5)-methyl 21.6 29 0.00098 32.7 1.1 47 651-697 77-133 (159)
225 1joc_A EEA1, early endosomal a 21.1 31 0.0011 31.1 1.2 32 652-683 68-103 (125)
226 2jrp_A Putative cytoplasmic pr 20.6 15 0.00052 30.6 -0.9 41 654-701 3-43 (81)
227 2cup_A Skeletal muscle LIM-pro 20.6 73 0.0025 26.7 3.5 46 654-703 34-80 (101)
228 3vth_A Hydrogenase maturation 20.4 36 0.0012 40.2 1.9 25 675-699 163-193 (761)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.8e-32 Score=325.40 Aligned_cols=283 Identities=23% Similarity=0.331 Sum_probs=191.0
Q ss_pred CCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeec
Q 004295 327 PPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILAD 406 (763)
Q Consensus 327 ~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILAD 406 (763)
||.....+|||||++||.||+.... ...||||||
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~----------------------------------------------~~~~~ILad 262 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWS----------------------------------------------KGDNGILAD 262 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHT----------------------------------------------TTCCEEECC
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhh----------------------------------------------cCCCEEEEe
Confidence 4445568999999999999986522 256999999
Q ss_pred CCCCchHHHHHHHHHhc----ccCCCCcccccCCCCCCCCcccccccccCcc----------------------------
Q 004295 407 AMGLGKTVMTIALLLTH----SQRGGLSGIQSASQPSDGGIEGYDISDQSPN---------------------------- 454 (763)
Q Consensus 407 EMGLGKTIq~LaLI~~~----~~~~~~l~v~p~sl~~~w~~ei~~~~~~~~~---------------------------- 454 (763)
+||||||+|+|++|... ...++++++||.+++.+|..++.+|......
T Consensus 263 emGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 342 (800)
T 3mwy_W 263 EMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKK 342 (800)
T ss_dssp CTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----C
T ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccc
Confidence 99999999999998755 3356789999999999999998776532111
Q ss_pred ------------------------------------ccccCccccchHHHhhhccccccCceEEEcCcchhhhh--hhhc
Q 004295 455 ------------------------------------LMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW--NKLI 496 (763)
Q Consensus 455 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW--~~~i 496 (763)
.++..+........+....+++.+|||| ++++-..| -.|+
T Consensus 343 ~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPi--qN~l~el~~ll~fL 420 (800)
T 3mwy_W 343 TMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPL--QNNIKELAALVNFL 420 (800)
T ss_dssp CCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCC--SSCSHHHHHHHHHH
T ss_pred cccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcC--CCCHHHHHHHHHHh
Confidence 0000000000001123345677889998 55555555 1221
Q ss_pred C-C--------CcccC---CHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHH
Q 004295 497 Q-K--------PYEEG---DERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRS 564 (763)
Q Consensus 497 ~-~--------P~e~~---~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~ 564 (763)
. . .+... ....+..|+.+++|+||||+|.++..+ ||++.+.+++|+||+.|+.+|+.++...
T Consensus 421 ~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~------LP~k~~~~v~v~ls~~q~~~Y~~i~~~~ 494 (800)
T 3mwy_W 421 MPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS------LPSKTERILRVELSDVQTEYYKNILTKN 494 (800)
T ss_dssp CSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT------SCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_pred CccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc------cCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 1 1 11111 134678899999999999999999776 9999999999999999999999998765
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHH
Q 004295 565 KVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEV 644 (763)
Q Consensus 565 ~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (763)
...+..... .....++..+++||++|+||+|+.... .. ....... . .....
T Consensus 495 ~~~l~~~~~-----~~~~~~l~~l~~Lrk~~~hp~l~~~~~--------~~----~~~~~~~-----~-~~~~~------ 545 (800)
T 3mwy_W 495 YSALTAGAK-----GGHFSLLNIMNELKKASNHPYLFDNAE--------ER----VLQKFGD-----G-KMTRE------ 545 (800)
T ss_dssp CC---------------CTHHHHHHHHHHHHHCGGGSSSHH--------HH----HCCCC----------CCSH------
T ss_pred HHHHhhccc-----cchhhHHHHHHHHHHHhcChhhhcchH--------HH----HHHhccc-----c-cccHH------
Confidence 433322211 223468999999999999999985310 00 0000000 0 00000
Q ss_pred HHHHhcCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccc
Q 004295 645 VEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVES 724 (763)
Q Consensus 645 l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~S 724 (763)
..+ ......|
T Consensus 546 ---------------------------------~~~-------------------------------------~~l~~~s 555 (800)
T 3mwy_W 546 ---------------------------------NVL-------------------------------------RGLIMSS 555 (800)
T ss_dssp ---------------------------------HHH-------------------------------------HHHHHTC
T ss_pred ---------------------------------HHH-------------------------------------HHhhhcC
Confidence 000 0012459
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 725 TKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 725 sKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
+|+.+|.++|.++...|+|+||||||+.+||+|+..|.
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999874
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=3.5e-31 Score=312.31 Aligned_cols=223 Identities=26% Similarity=0.361 Sum_probs=157.7
Q ss_pred CCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceee
Q 004295 326 EPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILA 405 (763)
Q Consensus 326 e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILA 405 (763)
..|+.+...|||||++||.||+....+.. .....|||||
T Consensus 47 ~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~-----------------------------------------~~~~~g~ILa 85 (644)
T 1z3i_X 47 VVDPVLSKVLRPHQREGVKFLWDCVTGRR-----------------------------------------IENSYGCIMA 85 (644)
T ss_dssp ECCHHHHTTCCHHHHHHHHHHHHHHTTSS-----------------------------------------STTCCEEEEC
T ss_pred eeChhhhhcccHHHHHHHHHHHHhhhccc-----------------------------------------ccCCCCeEee
Confidence 34567889999999999999997643210 0135699999
Q ss_pred cCCCCchHHHHHHHHHhcccC--------CCCcccccCCCCCCCCcccccccccCc---------c--------------
Q 004295 406 DAMGLGKTVMTIALLLTHSQR--------GGLSGIQSASQPSDGGIEGYDISDQSP---------N-------------- 454 (763)
Q Consensus 406 DEMGLGKTIq~LaLI~~~~~~--------~~~l~v~p~sl~~~w~~ei~~~~~~~~---------~-------------- 454 (763)
||||||||+|+|++|...... .++++++|.+++.+|..|+.+|..... .
T Consensus 86 d~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (644)
T 1z3i_X 86 DEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ 165 (644)
T ss_dssp CCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC
T ss_pred eCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 999999999999999765432 247999999999999999888753210 0
Q ss_pred --------------------------------------ccccCccccchHHHhhhccccccCceEEEcCcchhhhh----
Q 004295 455 --------------------------------------LMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTLLGQW---- 492 (763)
Q Consensus 455 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sll~qW---- 492 (763)
.++...+....-..+...++++.+|||| .+++...|
T Consensus 166 ~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPi--qN~l~El~sll~ 243 (644)
T 1z3i_X 166 GMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPI--QNDLLEYFSLVH 243 (644)
T ss_dssp SSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCS--GGGGGGCHHHHH
T ss_pred CCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcc--cCCHHHHHHHHH
Confidence 0000000000000133456678889988 44433333
Q ss_pred -------------hhhcCCCcccCC------------HHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEe
Q 004295 493 -------------NKLIQKPYEEGD------------ERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYC 547 (763)
Q Consensus 493 -------------~~~i~~P~e~~~------------~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v 547 (763)
++.|..|+..+. ...+..|+.++.|+||||+|+++..+ ||+|.+.+++|
T Consensus 244 fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~------LP~k~~~~v~~ 317 (644)
T 1z3i_X 244 FVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY------LPVKIEQVVCC 317 (644)
T ss_dssp HHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT------SCCEEEEEEEE
T ss_pred hhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhh------CCCceEEEEEe
Confidence 555555654321 23577899999999999999998776 99999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCccccc
Q 004295 548 ELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVM 602 (763)
Q Consensus 548 ~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~ 602 (763)
+||+.|+++|+.+++..... .....| .....++..+++|||+||||.|+.
T Consensus 318 ~ls~~q~~lY~~~~~~~~~~--~~~~~g---~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 318 NLTPLQKELYKLFLKQAKPV--ESLQTG---KISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp CCCHHHHHHHHHHHHHHCGG--GSSCTT---CCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH--HHHhcC---ccchhHHHHHHHHHHHhCCHHHHH
Confidence 99999999999998765321 111122 345678999999999999999985
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=3.5e-29 Score=286.28 Aligned_cols=272 Identities=26% Similarity=0.361 Sum_probs=200.2
Q ss_pred CCccCCCCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCccccccc
Q 004295 321 EIEEMEPPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMAR 400 (763)
Q Consensus 321 ~l~e~e~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~ 400 (763)
.+++++ |..+..+|||||++|+.||..++. ...
T Consensus 25 ~~~~~~-p~~~~~~L~~~Q~~~v~~l~~~~~----------------------------------------------~~~ 57 (500)
T 1z63_A 25 SFQLLE-PYNIKANLRPYQIKGFSWMRFMNK----------------------------------------------LGF 57 (500)
T ss_dssp -CCCCC-CCSCSSCCCHHHHHHHHHHHHHHH----------------------------------------------TTC
T ss_pred CCccCC-ChhhhccchHHHHHHHHHHHHHhh----------------------------------------------CCC
Confidence 344555 788999999999999999987643 246
Q ss_pred CceeecCCCCchHHHHHHHHHhccc---CCCCcccccCCCCCCCCcccccccccCc------------------------
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSASQPSDGGIEGYDISDQSP------------------------ 453 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~---~~~~l~v~p~sl~~~w~~ei~~~~~~~~------------------------ 453 (763)
||||||+||||||+++|+++..... ..++++++|.+++.+|..++.+|.....
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~t~~ 137 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYA 137 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEEEHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEeeHH
Confidence 8999999999999999999877553 2478999999999999998877643211
Q ss_pred ----------------------cccccCccccchHHHhhhccccccCceEEEcCcch-----------------hhhhhh
Q 004295 454 ----------------------NLMKKEPKSLSIDKLIKQTNTLINGGTLIICPMTL-----------------LGQWNK 494 (763)
Q Consensus 454 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~TLIV~P~sl-----------------l~qW~~ 494 (763)
...+........-..+....++..+|||+ +.++ ...|..
T Consensus 138 ~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~--~n~~~el~~ll~~l~p~~~~~~~~f~~ 215 (500)
T 1z63_A 138 VLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPI--ENKVDDLWSIMTFLNPGLLGSYSEFKS 215 (500)
T ss_dssp HHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCS--TTCHHHHHHHHHHHSTTTTCCHHHHHT
T ss_pred HHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCC--CCCHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 00000000000000123345677888887 3222 233466
Q ss_pred hcCCCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 004295 495 LIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQ 574 (763)
Q Consensus 495 ~i~~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~ 574 (763)
.+..|+..++......|+.++.|+++||+|.+... +..||++.+.+++++|++.|+.+|+.+.......+. .
T Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~----~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~ 287 (500)
T 1z63_A 216 KFATPIKKGDNMAKEELKAIISPFILRRTKYDKAI----INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----S 287 (500)
T ss_dssp TTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHH----HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----T
T ss_pred HhccccccccHHHHHHHHHHHhhHeeeecccccch----hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHH----h
Confidence 66777777888888999999999999999987321 234999999999999999999999998876543322 2
Q ss_pred cccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCC
Q 004295 575 GRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQG 654 (763)
Q Consensus 575 g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 654 (763)
.....+...++..+++|||+|+||.++... +
T Consensus 288 ~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~-----------------------------------------------~-- 318 (500)
T 1z63_A 288 VTGIKRKGMILSTLLKLKQIVDHPALLKGG-----------------------------------------------E-- 318 (500)
T ss_dssp CCTHHHHHHHHHHHHHHHHHTTCTHHHHCS-----------------------------------------------C--
T ss_pred hhcccchHHHHHHHHHHHHHhCCHHHhcCc-----------------------------------------------c--
Confidence 223345677899999999999999887410 0
Q ss_pred CCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHH
Q 004295 655 ECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKEL 734 (763)
Q Consensus 655 eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L 734 (763)
.....|+|+.+|+++|
T Consensus 319 ----------------------------------------------------------------~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 319 ----------------------------------------------------------------QSVRRSGKMIRTMEII 334 (500)
T ss_dssp ----------------------------------------------------------------CCSTTCHHHHHHHHHH
T ss_pred ----------------------------------------------------------------chhhcchhHHHHHHHH
Confidence 0013489999999999
Q ss_pred HHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 735 ENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 735 ~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.++...++|+|||+||+.+++.|+..|.
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~ 362 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIE 362 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHH
Confidence 9998889999999999999999998874
No 4
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.58 E-value=3.8e-15 Score=157.10 Aligned_cols=121 Identities=23% Similarity=0.314 Sum_probs=86.3
Q ss_pred heeecccccCcCCCccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHhhccCc
Q 004295 519 MLRRTKSSTDREGRPILVLPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHP 598 (763)
Q Consensus 519 ~LRRtK~~v~~~G~pil~LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~~~~~il~~LlrLRqiC~HP 598 (763)
-+||+|.++..+ ||||.+.+++|+||+.|+++|+.+.+.....+. .+....+...++..+++|||+||||
T Consensus 13 ~~rr~k~~v~~~------LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~hP 82 (271)
T 1z5z_A 13 GLVPRGSHMASD------LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDHP 82 (271)
T ss_dssp ---------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccHHHHHhh------CCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH----hccccchHHHHHHHHHHHHHHcCCH
Confidence 489999999887 999999999999999999999999887654432 2222234567899999999999999
Q ss_pred ccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHH
Q 004295 599 FLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRE 678 (763)
Q Consensus 599 ~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~ 678 (763)
.|+... .
T Consensus 83 ~l~~~~---------------------~---------------------------------------------------- 89 (271)
T 1z5z_A 83 ALLKGG---------------------E---------------------------------------------------- 89 (271)
T ss_dssp HHHHCS---------------------C----------------------------------------------------
T ss_pred HHhcCC---------------------c----------------------------------------------------
Confidence 998410 0
Q ss_pred HHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhh
Q 004295 679 CLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQ 758 (763)
Q Consensus 679 Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe 758 (763)
.....|+|+.+|+++|.++...++|+||||||+.++++|+
T Consensus 90 ----------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~ 129 (271)
T 1z5z_A 90 ----------------------------------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIR 129 (271)
T ss_dssp ----------------------------------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred ----------------------------------------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHH
Confidence 0013599999999999999888999999999999999999
Q ss_pred hhcc
Q 004295 759 IPLS 762 (763)
Q Consensus 759 ~~L~ 762 (763)
..|.
T Consensus 130 ~~L~ 133 (271)
T 1z5z_A 130 NIIE 133 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 5
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.44 E-value=4.6e-13 Score=142.69 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=92.0
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhccccc--chHHHHHHHHHHHhhccCcccccccCCCcchHHHH
Q 004295 537 LPPADMQVIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILH--NYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLN 614 (763)
Q Consensus 537 LPpk~~~vv~v~LS~~Er~lY~~i~~~~~~~~~~~~~~g~~~~--~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~ 614 (763)
-|++.+++++|.||+.|+++|+.++......+.++.+...... -...+..++++||++||||+|+........
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~----- 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS----- 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC-----
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc-----
Confidence 3999999999999999999999999877777776665332111 134678899999999999999842110000
Q ss_pred HHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhcCCCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCC
Q 004295 615 KLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPV 694 (763)
Q Consensus 615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~ 694 (763)
.......+
T Consensus 95 --------------------~~~~~~~~---------------------------------------------------- 102 (328)
T 3hgt_A 95 --------------------LITRDVPA---------------------------------------------------- 102 (328)
T ss_dssp --------------------SCSTTHHH----------------------------------------------------
T ss_pred --------------------ccccchhh----------------------------------------------------
Confidence 00000000
Q ss_pred CCccccccccccCCCCCccccccccccccchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 695 CRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 695 Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.-+..|+|+..|-++|..+++.|+|||||||||.+|||||..|.
T Consensus 103 ------------------------~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~ 146 (328)
T 3hgt_A 103 ------------------------HLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLL 146 (328)
T ss_dssp ------------------------HHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHT
T ss_pred ------------------------HHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHh
Confidence 01235999999999999999999999999999999999999874
No 6
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.40 E-value=5.7e-13 Score=163.64 Aligned_cols=69 Identities=23% Similarity=0.148 Sum_probs=57.3
Q ss_pred ccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCC
Q 004295 330 TLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409 (763)
Q Consensus 330 ~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMG 409 (763)
+...+|+|||++|+.||+.+. ..|+||||+||
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~------------------------------------------------~~~~LLad~tG 180 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH------------------------------------------------APRVLLADEVG 180 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS------------------------------------------------SCEEEECCCTT
T ss_pred CCCCCCcHHHHHHHHHHHHhc------------------------------------------------CCCEEEECCCC
Confidence 456899999999999998752 34799999999
Q ss_pred CchHHHHHHHHHhccc---CCCCcccccCCCCCCCCcccc
Q 004295 410 LGKTVMTIALLLTHSQ---RGGLSGIQSASQPSDGGIEGY 446 (763)
Q Consensus 410 LGKTIq~LaLI~~~~~---~~~~l~v~p~sl~~~w~~ei~ 446 (763)
+|||+++++++..... ..++++++|.+++.+|..++.
T Consensus 181 lGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~ 220 (968)
T 3dmq_A 181 LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEML 220 (968)
T ss_dssp SCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHH
Confidence 9999999999876543 236899999999999988763
No 7
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.08 E-value=3.5e-09 Score=118.03 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=41.0
Q ss_pred CceeecCCCCchHHHHHHHHHhcc--cCCCCcccccC-CCCCCCCccccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHS--QRGGLSGIQSA-SQPSDGGIEGYDIS 449 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~--~~~~~l~v~p~-sl~~~w~~ei~~~~ 449 (763)
++||+++||+|||++++.++.... ....+++++|. ++..+|..++..+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 699999999999999999887653 34568999997 78888988888775
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.1e-09 Score=87.90 Aligned_cols=53 Identities=23% Similarity=0.636 Sum_probs=46.5
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+...|+||.+.+.+|+.++|+|.||..|+..+++ .....||.||.++...++|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~if 66 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVKDKVF 66 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTTCC
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhhcC
Confidence 3478999999999999999999999999999986 3467899999999887764
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5.2e-09 Score=87.19 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=46.3
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcC-CCCCCCCCCCcccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT-PTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~-~~~~~CP~Cr~~i~~~~l 704 (763)
+..+|+||.+.+.++++++|+|.||.+|+..+++. .....||.||.++...++
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45799999999999999999999999999999874 346789999999887654
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.74 E-value=7.2e-09 Score=92.20 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=45.3
Q ss_pred CCCCcccccccCcee-cCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 654 GECPICLEAFEDAVL-TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 654 ~eC~IC~~~~~~~~i-t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
..|+||++.+.+|+. ++|+|.||..||..++... ...||.||.++...+++
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLRELV 74 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCE
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHHHhH
Confidence 589999999999999 9999999999999998754 27899999999877664
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=6e-09 Score=86.77 Aligned_cols=54 Identities=26% Similarity=0.662 Sum_probs=47.2
Q ss_pred CCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCC
Q 004295 653 QGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (763)
...|+||++.+.+++.+ +|+|.||..||..+++. ...||.||.++...+++..+
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccccC
Confidence 46899999999999876 99999999999999865 57999999999988876543
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.73 E-value=4.6e-09 Score=88.87 Aligned_cols=54 Identities=39% Similarity=0.786 Sum_probs=46.9
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCC-----CCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTP-----TSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~-----~~~~CP~Cr~~i~~~~l~ 705 (763)
+..+|+||.+.+.+|+.++|+|.||.+|+..+++.. ....||.||.++...++.
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 347899999999999999999999999999998763 367899999999876654
No 13
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.73 E-value=7.9e-09 Score=90.23 Aligned_cols=49 Identities=29% Similarity=0.720 Sum_probs=43.5
Q ss_pred CCCCCCcccccccCceecC-CcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~-C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+...|+||.+.+.+|+.++ |+|.||+.||..++.......||.||.++.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3478999999999999999 999999999999987655689999999863
No 14
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.73 E-value=6.6e-09 Score=87.83 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=45.8
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
+...|+||.+.+.+|++++|+|.||+.||..+++. ....||.||.++...++
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhC
Confidence 34789999999999999999999999999999964 36789999999886654
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=6.2e-09 Score=86.45 Aligned_cols=53 Identities=32% Similarity=0.664 Sum_probs=46.3
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
+..+|+||++.+.+++.++|+|.||..|+..++.. ...||.||..+...++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCHHHHSC
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCHhhccC
Confidence 45789999999999999999999999999998765 479999999998776643
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.71 E-value=4e-09 Score=85.31 Aligned_cols=53 Identities=36% Similarity=0.880 Sum_probs=45.7
Q ss_pred CCCCCCcccccccCc-------eecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 652 EQGECPICLEAFEDA-------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~-------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
+..+|+||++.+.++ ++++|+|.||.+|+..+++. ...||.||.++...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCccceee
Confidence 457999999988776 78999999999999999875 579999999999877653
No 17
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.71 E-value=1.4e-09 Score=122.74 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=85.4
Q ss_pred CceeecCCCCchHHHHHHHHHhcccCCCCcccccC-CCCCCCCccccccccc-C---cccccc--CccccchHHHhhhcc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSA-SQPSDGGIEGYDISDQ-S---PNLMKK--EPKSLSIDKLIKQTN 473 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~-sl~~~w~~ei~~~~~~-~---~~~~~~--~~~~~~~~~~~~~~~ 473 (763)
++||+++||+|||++++.++... ...+++++|. ++..+|..++..+-.. . ...... ..-...+........
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~~~~ 187 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE 187 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCCSEEEEEHHHHHHTHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCCcCCEEEEEcHHHHHHHH
Confidence 48999999999999999988766 3468899998 7888898887774111 0 000000 000011111111100
Q ss_pred cccc-CceEEEcCcchhh--hh---hhhcC---------CCcccCCHHHHHHHHHHHhhhheeecccccCcCCCccccCC
Q 004295 474 TLIN-GGTLIICPMTLLG--QW---NKLIQ---------KPYEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLP 538 (763)
Q Consensus 474 ~~~~-~~TLIV~P~sll~--qW---~~~i~---------~P~e~~~~~~~~~L~~iL~pi~LRRtK~~v~~~G~pil~LP 538 (763)
.+.. -+.+||=-...+. .| ...+. .|.... .....+..++.|.+.++...+.... -|+
T Consensus 188 ~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSATp~~~~--~~~~~l~~~~~~~~~~~~~~~l~~~-----~l~ 260 (472)
T 2fwr_A 188 KLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFERED--GRHEILKEVVGGKVFELFPDSLAGK-----HLA 260 (472)
T ss_dssp HHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEESCCCCTT--SGGGSHHHHTCCEEEECCHHHHTSC-----CCC
T ss_pred HhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEecCccCCC--CHHHHHHHHhCCeEeecCHHHHhcC-----cCC
Confidence 0111 1223322211111 11 11111 222111 1223567788888888776665221 277
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHH
Q 004295 539 PADMQVIYCELTEAEKDFYEALFKR 563 (763)
Q Consensus 539 pk~~~vv~v~LS~~Er~lY~~i~~~ 563 (763)
+.....+.+++++.++..|+.+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (472)
T 2fwr_A 261 KYTIKRIFVPLAEDERVEYEKREKV 285 (472)
T ss_dssp SEEECCEEECCCHHHHHHTTTTTHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHH
Confidence 8888889999999999999877654
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.71 E-value=5.5e-09 Score=87.59 Aligned_cols=51 Identities=29% Similarity=0.702 Sum_probs=44.2
Q ss_pred CCCCCcccccccCceecC-CcccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 653 QGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~-C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
...|+||.+.+.+|+.++ |+|.||..||..+++......||.||.++...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 468999999999999999 999999999999997655679999999755433
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.70 E-value=8.4e-09 Score=88.25 Aligned_cols=54 Identities=37% Similarity=0.865 Sum_probs=47.2
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCC----CCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTP----TSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~----~~~~CP~Cr~~i~~~~l~ 705 (763)
+..+|+||.+.+.+|++++|+|.||..|+..++... ....||.||.++...++.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 347999999999999999999999999999988763 378999999999877654
No 20
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=89.26 Aligned_cols=68 Identities=28% Similarity=0.544 Sum_probs=54.3
Q ss_pred CCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCCCCCccccccccccccchhHHHHHH
Q 004295 654 GECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNWVESTKIAVLLK 732 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~~~SsKi~aLl~ 732 (763)
..|+||.+.+.+|+.+ +|+|.||..|+..++.. ...||.||.++...++ ...--+..+++
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~l-----------------~~n~~l~~~i~ 83 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTEPDL-----------------KNNRILDELVK 83 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGC-----------------EECHHHHHHHH
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCChhhC-----------------CcCHHHHHHHH
Confidence 6899999999999887 89999999999999874 4799999999886544 23444667777
Q ss_pred HHHHHhcC
Q 004295 733 ELENLCLS 740 (763)
Q Consensus 733 ~L~~l~~~ 740 (763)
.+++.+.+
T Consensus 84 ~~~~~~~~ 91 (99)
T 2y43_A 84 SLNFARNH 91 (99)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77766544
No 21
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.68 E-value=1.1e-08 Score=91.05 Aligned_cols=52 Identities=21% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+...||||.+.|.+|++++|||.||+.||..++.. ...||.||.+++..+|+
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTESMLE 79 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCTTSSE
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCChhhce
Confidence 34789999999999999999999999999999974 57999999999876654
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.67 E-value=6.5e-09 Score=86.02 Aligned_cols=53 Identities=36% Similarity=0.883 Sum_probs=45.8
Q ss_pred CCCCCCCcccccccCc-------eecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 651 GEQGECPICLEAFEDA-------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~-------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
.+..+|+||++.+.++ ++++|+|.||.+|+..+++. ...||.||.++...++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChhhee
Confidence 4557999999988777 88999999999999999865 36999999999887764
No 23
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.66 E-value=9.6e-09 Score=88.62 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+...||||.+.|.+|++++|||.||+.||..++.. ...||.||.+++..+|+
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTESMLE 64 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGGGCE
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChHhcc
Confidence 34789999999999999999999999999999974 57899999998876654
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.1e-08 Score=88.25 Aligned_cols=57 Identities=35% Similarity=0.761 Sum_probs=47.9
Q ss_pred CCCCCCcccccccC----ceecCCcccccHHHHhhhhcCC-CCCCCCCCCccccccccccCC
Q 004295 652 EQGECPICLEAFED----AVLTPCAHRLCRECLLGSWKTP-TSGLCPVCRKTISRQDLITAP 708 (763)
Q Consensus 652 ~~~eC~IC~~~~~~----~~it~C~H~fC~~Ci~~~~~~~-~~~~CP~Cr~~i~~~~l~~~~ 708 (763)
+..+|+||.+.+.+ +++++|+|.||.+|+..+++.. ....||.||.++...++..++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSE
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHH
Confidence 34789999999888 9999999999999999998753 467999999998877664443
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=4.5e-08 Score=88.49 Aligned_cols=53 Identities=36% Similarity=0.847 Sum_probs=46.0
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCC-CCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTP-TSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~-~~~~CP~Cr~~i~~~~l~ 705 (763)
..+|+||.+.+.+|+.++|+|.||..|+..++... ....||.||.++...++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 36899999999999999999999999999998753 346899999998876653
No 26
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.65 E-value=1.5e-08 Score=89.83 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCCCCCcccccccCceecCCc-ccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCA-HRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~-H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+...||||.+.|.+|++++|+ |.||+.||..++.. ...||.||.++...+|+
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSE
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhce
Confidence 347899999999999999999 99999999999975 57899999999876654
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.3e-08 Score=87.00 Aligned_cols=54 Identities=33% Similarity=0.817 Sum_probs=47.1
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcC----CCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT----PTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~----~~~~~CP~Cr~~i~~~~l~ 705 (763)
+..+|+||.+.+.+|++++|+|.||.+|+..++.. .....||.||..+...++.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 45799999999999999999999999999998865 3478999999999876654
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.62 E-value=2.3e-08 Score=92.37 Aligned_cols=47 Identities=32% Similarity=0.738 Sum_probs=42.6
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..|+||.+.+.+|+.++|+|.||..|+..++.. ....||.||.++..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 689999999999999999999999999999873 35689999999876
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.62 E-value=2.4e-08 Score=84.63 Aligned_cols=53 Identities=34% Similarity=0.880 Sum_probs=43.6
Q ss_pred CCCCCCcccccc--cCceecC--CcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 652 EQGECPICLEAF--EDAVLTP--CAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~--~~~~it~--C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+...||||++++ .++.+.+ |||.||+.|+...++. ....||.||+++....+.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 457899999987 4556666 9999999999998864 468999999999877654
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=2.1e-08 Score=81.69 Aligned_cols=52 Identities=23% Similarity=0.718 Sum_probs=44.0
Q ss_pred CCCCCcccc-cccCc----eecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLE-AFEDA----VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~-~~~~~----~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...|+||.+ .+.++ ++++|+|.||.+|+..++.. ....||.||.++...++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccccce
Confidence 468999999 77777 57899999999999998764 357899999999987764
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.59 E-value=2e-08 Score=94.70 Aligned_cols=46 Identities=41% Similarity=0.783 Sum_probs=41.7
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..|+||++.+.+|++++|+|.||..|+..++.. ...||.||.++..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 579999999999999999999999999998865 5789999998864
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.4e-08 Score=85.02 Aligned_cols=47 Identities=30% Similarity=0.758 Sum_probs=42.5
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+..+|+||.+.+.+|++++|+|.||..|+..+++. ...||.||.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34789999999999999999999999999999864 678999999886
No 33
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.4e-07 Score=86.33 Aligned_cols=48 Identities=29% Similarity=0.613 Sum_probs=42.6
Q ss_pred CCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 653 QGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
...|+||.+.+.+|+++ +|+|.||..||..++. ..||.||.++...++
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccccc
Confidence 46899999999999998 9999999999999886 789999999865443
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.55 E-value=4.2e-08 Score=95.27 Aligned_cols=48 Identities=33% Similarity=0.953 Sum_probs=42.1
Q ss_pred CCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|+||.+.+.+|+.+ +|+|.||..|+..++.. ....||.||.++...
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSK 103 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSG
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCc
Confidence 5899999999999987 99999999999999874 257899999998643
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.55 E-value=4.4e-08 Score=82.66 Aligned_cols=55 Identities=33% Similarity=0.739 Sum_probs=45.2
Q ss_pred CCCCCCcccccccCc---eecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCC
Q 004295 652 EQGECPICLEAFEDA---VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~---~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (763)
+..+|+||++.+..+ .+++|+|.||..||..+++. ...||.||..+...++...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCCcccCCCC
Confidence 457999999987654 56799999999999999865 47899999999988776443
No 36
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.6e-08 Score=81.72 Aligned_cols=48 Identities=40% Similarity=0.979 Sum_probs=41.6
Q ss_pred CCCCCCcccccccCc-------eecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDA-------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~-------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+..+|+||++.+.++ ++++|+|.||.+|+..+++. ...||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 457999999988776 88999999999999999875 5789999998764
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.52 E-value=8.1e-08 Score=91.88 Aligned_cols=48 Identities=33% Similarity=0.737 Sum_probs=43.3
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|+||.+.+.+|++++|+|.||..||..++.. ....||.||.++...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 589999999999999999999999999999975 345899999998865
No 38
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.51 E-value=4.1e-08 Score=76.92 Aligned_cols=47 Identities=38% Similarity=0.756 Sum_probs=40.4
Q ss_pred CCCCCCcccccccC----ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFED----AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~----~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+..+|+||++.+.+ +++++|+|.||.+|+..+++.. ..||.||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45789999998754 7789999999999999998764 88999998764
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=7e-08 Score=77.96 Aligned_cols=44 Identities=34% Similarity=0.787 Sum_probs=38.9
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcC-CCCCCCCCC
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT-PTSGLCPVC 695 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~-~~~~~CP~C 695 (763)
+...|+||++.+.+|++++|+|.||..||..+++. .....||.|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45799999999999999999999999999999873 346789998
No 40
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.3e-08 Score=80.96 Aligned_cols=50 Identities=30% Similarity=0.817 Sum_probs=43.3
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l 704 (763)
+..+|+||++.+.+ ++++|+|.||..|+..++. ....||.||.++...+.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCCc
Confidence 34799999998888 9999999999999999876 47899999999886543
No 41
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-08 Score=93.81 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=80.3
Q ss_pred ceEEEEe--eeecEEeeccCCCCCCCCEEEEEeecCCCCCCCCCCCCCcccccccccCCCCeEEEEEcCCCCccccCchh
Q 004295 94 EWWFVGW--GDVPAMSTSKGRKLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPHE 171 (763)
Q Consensus 94 ~~~~ig~--~~v~~~~t~~g~~l~~g~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivr~~~~~~~eiGrlp~~ 171 (763)
+|.++|+ +.|.|+..+.|. ++.||.|.+.|...++ ++ .+.|++.|.++..||.+|++
T Consensus 7 ~~~l~g~~~~~I~G~ry~~g~-l~~G~~l~L~REp~N~-----------yD---------~nAI~V~~~~g~~vGYvPr~ 65 (122)
T 2l1i_A 7 DSVLFGSLRGHVVGLRYYTGV-VNNNEMVALQRDPNNP-----------YD---------KNAIKVNNVNGNQVGHLKKE 65 (122)
T ss_dssp TTCCCCBCCCCBCCSTTTTSC-CCSSSCEECCCCTTCT-----------TH---------HHHHHCCCTTBGGGGGHHHH
T ss_pred eeEEEeEEEEEEEEEecccCC-CCCCCEEEEEECCCCC-----------CC---------hhHEEEECCCCCEEEEecHH
Confidence 5678885 566798888887 9999999999942211 12 25677778888899999999
Q ss_pred HHHHHHhhhcCCcEEEEEEEccCCCccCCCCeEEEEEEEEEeccccc
Q 004295 172 WSRCLLPLVRDKKVEILGCCKSAPEVLGIMDTIVLSIRVYINSSMFR 218 (763)
Q Consensus 172 ~a~~l~pLld~~~~~~eg~~~~~p~~l~~~~~~~l~l~~~~~~~~f~ 218 (763)
.|.+++||||.+.+.+||.+. ....-..++.++|+||.+++.|+
T Consensus 66 ~a~~la~lmD~g~~~veg~v~---~g~~~~~~~pi~l~~~~~~~~~~ 109 (122)
T 2l1i_A 66 LAGALAYIMDNKLAQIEGVVP---FGANNAFTMPLHMTFWGKEENRK 109 (122)
T ss_dssp HHHHHHHHTTSCCEEEEEECC---TTTTTTCCCCCEEEEEECHHHHH
T ss_pred HHHHHHhhccCCeEEEEEEEe---cCCCCCCceeEEEEEEeChhHHH
Confidence 999999999999999999764 12233457899999999998864
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=4.1e-08 Score=103.02 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=45.2
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...||||.+.|.+|++++|||.||+.||..++.... ..||.||.+++..+++
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLI 259 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCE
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCc
Confidence 478999999999999999999999999999997532 3499999999876654
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=5.5e-08 Score=85.47 Aligned_cols=54 Identities=28% Similarity=0.590 Sum_probs=45.9
Q ss_pred CCCCCCcccccccCceecC-CcccccHHHHhhhhcCC----CCCCCCC--CCcc-ccccccc
Q 004295 652 EQGECPICLEAFEDAVLTP-CAHRLCRECLLGSWKTP----TSGLCPV--CRKT-ISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~-C~H~fC~~Ci~~~~~~~----~~~~CP~--Cr~~-i~~~~l~ 705 (763)
+...||||.+.|.+|++++ |+|.||+.||..++... ....||. |+.. +...+|+
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc
Confidence 3478999999999999996 99999999999999653 3578999 9887 7776664
No 44
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.46 E-value=5.5e-08 Score=95.21 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=45.6
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...||||.+.|.+|++++|||.||+.||..++.... ..||.||.+++..+|+
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLI 157 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCE
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCc
Confidence 478999999999999999999999999999997532 3699999999877664
No 45
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=74.94 Aligned_cols=44 Identities=32% Similarity=0.973 Sum_probs=38.9
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcC-CCCCCCCCC
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKT-PTSGLCPVC 695 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~-~~~~~CP~C 695 (763)
+...|+||++.+.++++++|+|.||.+|+..++.. .....||.|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34789999999999999999999999999999764 357889988
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.45 E-value=1.3e-07 Score=74.13 Aligned_cols=47 Identities=36% Similarity=0.800 Sum_probs=39.3
Q ss_pred CCCCCCcccccccC---ceecC-CcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFED---AVLTP-CAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~---~~it~-C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+..+|+||++.+.+ +..++ |+|.||.+|+..+++. ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 44799999998766 66676 9999999999998865 578999998764
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.44 E-value=6.9e-08 Score=76.30 Aligned_cols=45 Identities=29% Similarity=0.674 Sum_probs=39.6
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+...|+||.+.+.+|++++|+|.||..|+.. ....||.||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEeec
Confidence 4578999999999999999999999999976 35789999998764
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.43 E-value=1e-07 Score=85.79 Aligned_cols=49 Identities=29% Similarity=0.726 Sum_probs=43.3
Q ss_pred CCCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 652 EQGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
+...|+||.+.+.+|+.+ +|+|.||..|+..++.. ...||.||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCcccccc
Confidence 346899999999999987 99999999999999875 38999999998764
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.43 E-value=5.4e-08 Score=88.41 Aligned_cols=51 Identities=31% Similarity=0.666 Sum_probs=41.3
Q ss_pred CCCCCCcccccccCce------------------ecCCcccccHHHHhhhhcC---CCCCCCCCCCcccccc
Q 004295 652 EQGECPICLEAFEDAV------------------LTPCAHRLCRECLLGSWKT---PTSGLCPVCRKTISRQ 702 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~------------------it~C~H~fC~~Ci~~~~~~---~~~~~CP~Cr~~i~~~ 702 (763)
...+|+||++.+.++. +++|+|.||..||..++.. .....||.||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999886653 7899999999999999853 2467899999987643
No 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.42 E-value=9.1e-08 Score=78.42 Aligned_cols=48 Identities=29% Similarity=0.779 Sum_probs=41.3
Q ss_pred CCCCCCcccccccCc-eecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~-~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+..+|+||.+.+.++ ++++|+|.||..|+..+++. ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 447899999998886 78999999999999998864 4789999998863
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.41 E-value=7.4e-08 Score=88.22 Aligned_cols=52 Identities=40% Similarity=0.913 Sum_probs=44.9
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...|+||.+.+.+|+.++|+|.||..|+..++... ...||.||.++...+++
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLF 69 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCE
T ss_pred CCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHHhcc
Confidence 46899999999999999999999999999988643 23899999999876654
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.41 E-value=1.1e-07 Score=86.59 Aligned_cols=51 Identities=37% Similarity=0.732 Sum_probs=45.4
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
..|+||.+.+.+|+.++|+|.||..|+..++... ...||.||.++...++.
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCHhhcc
Confidence 6899999999999999999999999999998653 56899999999877664
No 53
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.38 E-value=1.2e-07 Score=86.26 Aligned_cols=47 Identities=36% Similarity=0.916 Sum_probs=41.9
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..|+||.+.+.+|+.++|+|.||..|+..++.. ....||.||..+..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 589999999999999999999999999998864 35789999998874
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.38 E-value=7.2e-07 Score=109.31 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=35.9
Q ss_pred ccchhHHHHHHHHHHHh--cCCCeEEEecCchhHHHHhhhhcc
Q 004295 722 VESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 722 ~~SsKi~aLl~~L~~l~--~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
..++|+..|+++|.+.. ..+.|+|||++++.+++.|...|+
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~ 652 (936)
T 4a2w_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCME 652 (936)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 35999999999999865 338999999999999999998875
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.37 E-value=1.8e-07 Score=76.85 Aligned_cols=48 Identities=33% Similarity=0.713 Sum_probs=39.9
Q ss_pred CCCCCCccccccc---CceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFE---DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~---~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
...+|+||++.+. .+++++|+|.||..|+..+++. ...||.||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 4478999998763 4678999999999999999865 3579999998764
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=8.4e-07 Score=74.37 Aligned_cols=42 Identities=31% Similarity=0.807 Sum_probs=37.9
Q ss_pred CCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.+|+||++.+.++++++|+|. ||..|+.. ...||.||.++..
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 589999999999999999999 99999964 3789999999875
No 57
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.8e-07 Score=76.84 Aligned_cols=49 Identities=29% Similarity=0.766 Sum_probs=39.7
Q ss_pred CCCCCCcccccccCce---ecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 652 EQGECPICLEAFEDAV---LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~---it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
+..+|+||++.+..+. +++|+|.||.+|+..+++. ...||.||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence 3578999999876543 4599999999999999875 35899999987643
No 58
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.33 E-value=2.1e-07 Score=81.10 Aligned_cols=48 Identities=33% Similarity=0.730 Sum_probs=40.4
Q ss_pred CCCCCCcccccccC---ceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFED---AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~---~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+..+|+||++.+.. +..++|+|.||..||..+++. ...||.||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 45689999997766 777899999999999999864 4689999998753
No 59
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.5e-07 Score=78.91 Aligned_cols=48 Identities=31% Similarity=0.722 Sum_probs=40.7
Q ss_pred CCCCCCcccccccCc---eecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDA---VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~---~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+..+|+||++.+..+ ..++|+|.||.+|+..+++. ...||.||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 457899999987765 67899999999999999865 4689999998764
No 60
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.3e-07 Score=95.18 Aligned_cols=54 Identities=24% Similarity=0.564 Sum_probs=47.4
Q ss_pred CCCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCC--CCccccccccc
Q 004295 652 EQGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPV--CRKTISRQDLI 705 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~--Cr~~i~~~~l~ 705 (763)
.+..||||++.|.+|+.+ .|||.||+.||..+|+......||. |+..+...+|.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 457899999999999974 9999999999999998655678999 99999877763
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.31 E-value=2.3e-07 Score=100.97 Aligned_cols=54 Identities=31% Similarity=0.671 Sum_probs=46.7
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccccC
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITA 707 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~ 707 (763)
..+|+||++.+.++++++|+|.||..|+..+... ....||.||.++....++.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEec
Confidence 3699999999999999999999999999887752 36789999999988776654
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.29 E-value=4.6e-07 Score=75.85 Aligned_cols=43 Identities=30% Similarity=0.800 Sum_probs=38.9
Q ss_pred CCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|+||++.+.++++++|+|. ||..|+..+ ..||.||.++...
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 589999999999999999999 999999865 7899999988743
No 63
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.27 E-value=1.4e-06 Score=99.56 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHHHh--cCCCeEEEecCchhHHHHhhhhcc
Q 004295 722 VESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 722 ~~SsKi~aLl~~L~~l~--~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
..+.|+.+|+++|.+.. ..+.|+|||++++.+.+.|...|+
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~ 411 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCME 411 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHH
Confidence 35999999999998865 448999999999999999998875
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.24 E-value=4.3e-07 Score=84.16 Aligned_cols=53 Identities=36% Similarity=0.881 Sum_probs=46.2
Q ss_pred CCCCCCcccccccCc-------eecCCcccccHHHHhhhhcCCCCCCCCCCCcccccccccc
Q 004295 652 EQGECPICLEAFEDA-------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLIT 706 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~-------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~ 706 (763)
+..+|+||++.+.++ ++++|+|.||.+|+..+++. ...||.||..+...++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCccccccc
Confidence 457899999998887 89999999999999999875 459999999998877654
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.23 E-value=4.6e-07 Score=73.66 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=41.9
Q ss_pred cCCCCCCCcccccccCceec--CCccc-ccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 650 KGEQGECPICLEAFEDAVLT--PCAHR-LCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 650 ~~~~~eC~IC~~~~~~~~it--~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
..+..+|+||++...++++. +|+|. +|.+|+...++. ...||.||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 34557999999999898877 99999 899999988764 468999999886
No 66
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=8.6e-07 Score=75.54 Aligned_cols=50 Identities=28% Similarity=0.541 Sum_probs=39.5
Q ss_pred CCCCCCcccccccC--------------cee-cCCcccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 652 EQGECPICLEAFED--------------AVL-TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 652 ~~~eC~IC~~~~~~--------------~~i-t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
+...|+||++.+++ +++ ++|+|.||.+||..+++.. ..||.||.++...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCcchhh
Confidence 44679999987765 334 4599999999999998753 69999999876544
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.19 E-value=6.1e-07 Score=72.65 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=40.4
Q ss_pred CCCCCcccccccCceec--CCccc-ccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 653 QGECPICLEAFEDAVLT--PCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it--~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..+|+||++...++++. +|+|. +|.+|+...++. ...||.||.+|..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 46899999988888776 99999 999999988764 4789999999863
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.17 E-value=1.3e-06 Score=73.99 Aligned_cols=43 Identities=30% Similarity=0.756 Sum_probs=38.7
Q ss_pred CCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|+||++...++++++|+|. ||..|+... ..||.||.++...
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 589999999999999999999 999999865 3899999998864
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.16 E-value=7.5e-07 Score=71.66 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCC
Q 004295 653 QGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (763)
...|+||.+.|.+|+++ +|||.||++||+.+++. ...||.++.+++..+|+.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChhhcEECc
Confidence 36899999999999999 99999999999999974 35699999999999988654
No 70
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.16 E-value=1.9e-06 Score=103.84 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=35.7
Q ss_pred ccchhHHHHHHHHHHHh--cCCCeEEEecCchhHHHHhhhhcc
Q 004295 722 VESTKIAVLLKELENLC--LSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 722 ~~SsKi~aLl~~L~~l~--~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
..++|+..|+++|.+.. ..+.|+|||++++.+++.|...|+
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~ 652 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCME 652 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHH
Confidence 45999999999998854 348999999999999999998874
No 71
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.15 E-value=3.3e-07 Score=86.66 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=42.4
Q ss_pred CCCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+...|+||.+.+.+|+.++|+|.||+.||..+++. ....||.||.++..
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-GPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-CCCCCCCCCCcccc
Confidence 34789999999999999999999999999999863 34589999997643
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.13 E-value=7.1e-07 Score=86.96 Aligned_cols=52 Identities=40% Similarity=0.913 Sum_probs=45.3
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...|+||.+.+.+|+.++|+|.||+.|+..++... ...||.||.+++..+++
T Consensus 18 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLF 69 (170)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcchhhhh
Confidence 46899999999999999999999999999988642 34999999999887654
No 73
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.7e-06 Score=71.21 Aligned_cols=45 Identities=31% Similarity=0.792 Sum_probs=39.7
Q ss_pred CCCCCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.+...|.||++...++++++|+|. ||..|+.. ...||.||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 345799999999999999999999 99999984 3689999999875
No 74
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.00 E-value=1.6e-06 Score=80.19 Aligned_cols=53 Identities=36% Similarity=0.883 Sum_probs=45.8
Q ss_pred CCCCCCCcccccccCc-------eecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 651 GEQGECPICLEAFEDA-------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~-------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
.+..+|+||++.+.++ +.++|+|.||..|+..+++. ...||.||..+..++++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChhcce
Confidence 4557999999988776 88999999999999999865 46999999999988775
No 75
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.98 E-value=1.2e-06 Score=76.63 Aligned_cols=53 Identities=23% Similarity=0.573 Sum_probs=41.1
Q ss_pred CCCCCCcccccccCcee---cCCcccccHHHHhhhhcCC------CCCCCCC--CCcc--cccccc
Q 004295 652 EQGECPICLEAFEDAVL---TPCAHRLCRECLLGSWKTP------TSGLCPV--CRKT--ISRQDL 704 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~i---t~C~H~fC~~Ci~~~~~~~------~~~~CP~--Cr~~--i~~~~l 704 (763)
+..+|+||++.+..+.. ++|+|.||++|+..|++.. ....||. |+.. +...++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 34789999997766543 3799999999999998642 2468999 9998 765544
No 76
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.91 E-value=7e-06 Score=73.57 Aligned_cols=47 Identities=23% Similarity=0.489 Sum_probs=39.3
Q ss_pred CCCCCCcccccccCc------------------eecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFEDA------------------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~------------------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
+...|+||++.+.++ ++++|+|.||..||..++.. ...||.||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 457899999987754 45799999999999999875 578999999764
No 77
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.81 E-value=9.2e-06 Score=87.81 Aligned_cols=52 Identities=35% Similarity=0.848 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCCCcccccccCceecCCccc-ccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 642 QEVVEELQKGEQGECPICLEAFEDAVLTPCAHR-LCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 642 ~~~l~~l~~~~~~eC~IC~~~~~~~~it~C~H~-fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
++.++.++ +...|+||++.+.++++++|+|. ||..|+... ..||.||.++..
T Consensus 286 ~~~~~~l~--~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 286 EEQLRRLQ--EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHHH--TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred HHHHHhCc--CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 34444443 34799999999999999999999 999999865 689999999874
No 78
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=97.72 E-value=4e-05 Score=68.66 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=63.9
Q ss_pred EEEEeeeecEEeeccCC-----CCCCCCEEEEEeecCCCCCCCCCCCCCcccccccccCCCCeEEEEEcCCCCccccCch
Q 004295 96 WFVGWGDVPAMSTSKGR-----KLRRGDEVTFTFPLKSFNSLSSKFPSKSFVRARQAVVPCSEIVRFSTKDAGEIGRIPH 170 (763)
Q Consensus 96 ~~ig~~~v~~~~t~~g~-----~l~~g~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivr~~~~~~~eiGrlp~ 170 (763)
-|+=.|.|.|+..+.|. .|+.||.|.+.|.-.++ ++ .+.|++.|.+|..||.+|+
T Consensus 6 ~~l~~f~IaG~ryy~g~~~~~~~L~~Ge~l~L~rEp~N~-----------yD---------~nAI~V~~~~g~kvGYvPr 65 (109)
T 3k2y_A 6 VALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQ-----------YD---------DNAISVWTLQHAKLGYIAR 65 (109)
T ss_dssp EEEEEEEEECGGGCTTHHHHTTSCCTTCEEEEEECTTCS-----------SC---------TTCEEEECTTCCEEEEECG
T ss_pred EEEEEEEEEeEEeecchhhhhhcCCCCCEEEEEECCCCc-----------CC---------hhHEEEEeCCCCEEEEecH
Confidence 57888999999999873 38999999999942211 12 3779999999999999999
Q ss_pred hHHHHHHhhhcCCcEEEEEEEcc
Q 004295 171 EWSRCLLPLVRDKKVEILGCCKS 193 (763)
Q Consensus 171 ~~a~~l~pLld~~~~~~eg~~~~ 193 (763)
+.+..+++|||+|. .++|++..
T Consensus 66 ~~a~~la~lmd~g~-~l~a~V~~ 87 (109)
T 3k2y_A 66 YQNQPYATLMDQGQ-RLYGIVTV 87 (109)
T ss_dssp GGHHHHHHHHHTTC-EEEEEEEE
T ss_pred HHHHHHHHHhhCCC-EEEEEEEE
Confidence 99999999999998 88887663
No 79
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=2.5e-05 Score=66.32 Aligned_cols=52 Identities=27% Similarity=0.557 Sum_probs=42.9
Q ss_pred CCCCCCcccccc--cCceecCCc-----ccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 652 EQGECPICLEAF--EDAVLTPCA-----HRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 652 ~~~eC~IC~~~~--~~~~it~C~-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
+..+|.||++.. +++.+++|. |.|..+||..++.......||.||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 447899999854 567889996 9999999999987655679999999876544
No 80
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.59 E-value=4.9e-05 Score=79.60 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=34.7
Q ss_pred CCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCch
Q 004295 333 CELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGK 412 (763)
Q Consensus 333 ~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLGK 412 (763)
.+|+|||.+++.+++... .+||+++||.||
T Consensus 112 ~~l~~~Q~~ai~~~l~~~--------------------------------------------------~~ll~~~tGsGK 141 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNR--------------------------------------------------RRILNLPTSAGR 141 (282)
T ss_dssp CCCCHHHHHHHHHHHHHS--------------------------------------------------EEEECCCTTSCH
T ss_pred cCccHHHHHHHHHHHhcC--------------------------------------------------CeEEEcCCCCCc
Confidence 489999999999987641 379999999999
Q ss_pred HHHHHHHHHhc
Q 004295 413 TVMTIALLLTH 423 (763)
Q Consensus 413 TIq~LaLI~~~ 423 (763)
|+++++++...
T Consensus 142 T~~~~~~~~~~ 152 (282)
T 1rif_A 142 SLIQALLARYY 152 (282)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877653
No 81
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.56 E-value=1.2e-05 Score=73.21 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=0.8
Q ss_pred CCCCCCcccccccCc------------------eecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 652 EQGECPICLEAFEDA------------------VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~------------------~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+...|+||++.+.++ +.++|+|.||..||..++.. ...||.||.++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 347899999987653 22589999999999998875 5789999997653
No 82
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.36 E-value=5.8e-05 Score=77.31 Aligned_cols=66 Identities=18% Similarity=0.094 Sum_probs=51.3
Q ss_pred ccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCC
Q 004295 330 TLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMG 409 (763)
Q Consensus 330 ~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMG 409 (763)
.+..+|++||++++.+++.. ..+||+.++|
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~--------------------------------------------------~~~ll~~~tG 118 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVD--------------------------------------------------KRGCIVLPTG 118 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTT--------------------------------------------------SEEEEEESSS
T ss_pred cCCCCcCHHHHHHHHHHHhC--------------------------------------------------CCEEEEeCCC
Confidence 45578999999999987643 1389999999
Q ss_pred CchHHHHHHHHHhcccCCCCcccccC-CCCCCCCccccc
Q 004295 410 LGKTVMTIALLLTHSQRGGLSGIQSA-SQPSDGGIEGYD 447 (763)
Q Consensus 410 LGKTIq~LaLI~~~~~~~~~l~v~p~-sl~~~w~~ei~~ 447 (763)
.|||+++++++... ....++++|. .+..+|..++.+
T Consensus 119 ~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp TTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 99999999988775 3457888887 566677666554
No 83
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.06 E-value=0.00033 Score=81.21 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCc
Q 004295 332 KCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLG 411 (763)
Q Consensus 332 ~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLG 411 (763)
...|||||.+|+.|++..-. +...+++|+++||.|
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~---------------------------------------------~~~~~~ll~~~TGsG 210 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL---------------------------------------------QGKKRSLITMATGTG 210 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH---------------------------------------------TTCSEEEEEECTTSC
T ss_pred CCCchHHHHHHHHHHHHHHh---------------------------------------------cCCCceEEEecCCCC
Confidence 46899999999999986311 012357999999999
Q ss_pred hHHHHHHHHHhcc----------cCCCCccccc-CCCCCCCC-cccccc
Q 004295 412 KTVMTIALLLTHS----------QRGGLSGIQS-ASQPSDGG-IEGYDI 448 (763)
Q Consensus 412 KTIq~LaLI~~~~----------~~~~~l~v~p-~sl~~~w~-~ei~~~ 448 (763)
||++++.++.... ....+++++| ..+..+|. .++..+
T Consensus 211 KT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~ 259 (590)
T 3h1t_A 211 KTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPF 259 (590)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTT
T ss_pred hHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 9999998875432 2346788899 46667887 665544
No 84
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.95 E-value=0.0006 Score=77.28 Aligned_cols=67 Identities=19% Similarity=0.097 Sum_probs=49.1
Q ss_pred CCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCCCCc
Q 004295 332 KCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLG 411 (763)
Q Consensus 332 ~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEMGLG 411 (763)
..+|+|||.+|+.+++.. .++||+++||.|
T Consensus 111 ~~~l~~~Q~~ai~~~~~~--------------------------------------------------~~~ll~~~tGsG 140 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN--------------------------------------------------RRRILNLPTSAG 140 (510)
T ss_dssp EECCCHHHHHHHHHHHHH--------------------------------------------------SEEEEECCSTTT
T ss_pred CCCCCHHHHHHHHHHHhc--------------------------------------------------CCcEEEeCCCCC
Confidence 458999999999999753 248999999999
Q ss_pred hHHHHHHHHHhcc--cCCCCcccccC-CCCCCCCcccccc
Q 004295 412 KTVMTIALLLTHS--QRGGLSGIQSA-SQPSDGGIEGYDI 448 (763)
Q Consensus 412 KTIq~LaLI~~~~--~~~~~l~v~p~-sl~~~w~~ei~~~ 448 (763)
||++++.++.... ..+.+++++|. .+..+|..++..+
T Consensus 141 KT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 141 RSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 9999987665432 22357788886 4555666555433
No 85
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.88 E-value=0.00095 Score=75.74 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=35.2
Q ss_pred cchhHHHHHHHHHHHhcC--CCeEEEecCchhHHHHhhhhcc
Q 004295 723 ESTKIAVLLKELENLCLS--GSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 723 ~SsKi~aLl~~L~~l~~~--~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.+.|+.+|+++|.++... +.|+|||++++.+.+.|...|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~ 410 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIE 410 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHh
Confidence 589999999999987543 6999999999999999988774
No 86
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.87 E-value=0.00019 Score=84.64 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=37.2
Q ss_pred cCceeecCCCCchHHHHHHHHHhcccC------CCCcccccC-CCCCCCCccccccc
Q 004295 400 RGGILADAMGLGKTVMTIALLLTHSQR------GGLSGIQSA-SQPSDGGIEGYDIS 449 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI~~~~~~------~~~l~v~p~-sl~~~w~~ei~~~~ 449 (763)
+++|++++||+|||++++..+...... +..++++|+ ++..+|..++..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 368999999999999988777643211 457888887 67778877776654
No 87
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.72 E-value=0.00037 Score=82.21 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=38.0
Q ss_pred CceeecCCCCchHHHHHHHHHhccc---C----CCCcccccCC-CCCCC-Ccccccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ---R----GGLSGIQSAS-QPSDG-GIEGYDISD 450 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~---~----~~~l~v~p~s-l~~~w-~~ei~~~~~ 450 (763)
.+||+++||+|||++++..+..... . +.+++++|.. +..+| ..++..+..
T Consensus 24 ~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 24 NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 5899999999999998877754311 1 5688999975 67788 887776654
No 88
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0019 Score=53.68 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=39.8
Q ss_pred CCCCCCcccccccCce-ecCCcccccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 652 EQGECPICLEAFEDAV-LTPCAHRLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~-it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
...+|.||.+.+..-. -..|+|.|-..||..+++......||.||....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3479999999665333 248999999999999998766689999998765
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.60 E-value=0.0011 Score=57.55 Aligned_cols=47 Identities=26% Similarity=0.631 Sum_probs=37.5
Q ss_pred CCCcccccccC-ceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 655 ECPICLEAFED-AVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 655 eC~IC~~~~~~-~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
.|++|.-|+.. ..+.||.|.||.+|...+.+. ....||.|+.++..=
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeeee
Confidence 58999887754 457899999999999887643 367899999998753
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.56 E-value=0.0019 Score=63.76 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.6
Q ss_pred CceeecCCCCchHHHHHHHHHhc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH 423 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~ 423 (763)
.+|+...+|.|||+.++..+...
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999998877644
No 91
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.51 E-value=0.00049 Score=72.94 Aligned_cols=50 Identities=30% Similarity=0.590 Sum_probs=37.7
Q ss_pred CCCCCCcccccccC-cee-------cCCcccccHHHHhhhhcCCC---------CCCCCCCCccccc
Q 004295 652 EQGECPICLEAFED-AVL-------TPCAHRLCRECLLGSWKTPT---------SGLCPVCRKTISR 701 (763)
Q Consensus 652 ~~~eC~IC~~~~~~-~~i-------t~C~H~fC~~Ci~~~~~~~~---------~~~CP~Cr~~i~~ 701 (763)
...+|+||++.+.+ ..+ ..|+|.|...|+..+++... .+.||.||.+|+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34799999985544 222 47999999999999885421 3689999998763
No 92
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.32 E-value=0.0013 Score=52.37 Aligned_cols=50 Identities=20% Similarity=0.463 Sum_probs=40.8
Q ss_pred CCCCCCCcccccccCceecCCc--c---cccHHHHhhhhcCCCCCCCCCCCcccc
Q 004295 651 GEQGECPICLEAFEDAVLTPCA--H---RLCRECLLGSWKTPTSGLCPVCRKTIS 700 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~--H---~fC~~Ci~~~~~~~~~~~CP~Cr~~i~ 700 (763)
++...|.||.+..+++.++||. | .+-.+|+..++.......||.|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457899999877777889964 3 899999999987655689999998765
No 93
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.24 E-value=0.005 Score=66.50 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.1
Q ss_pred CceeecCCCCchHHHHHHHHHhc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH 423 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~ 423 (763)
.+|++..+|.|||+.++..++..
T Consensus 47 ~~lv~a~TGsGKT~~~~~~~~~~ 69 (391)
T 1xti_A 47 DVLCQAKSGMGKTAVFVLATLQQ 69 (391)
T ss_dssp CEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999987766544
No 94
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=96.02 E-value=0.0028 Score=47.43 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=35.4
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
.++.+..|.+|-|... -..+..|..++.|+++||+.||+++
T Consensus 5 ~~~~i~~F~~iTg~~~--~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEE--DRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCH--HHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCH--HHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 4678999999999743 3688888999999999999999975
No 95
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.86 E-value=0.01 Score=63.24 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=18.9
Q ss_pred CceeecCCCCchHHHHHHHHHhc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH 423 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~ 423 (763)
..|++.++|.|||++++..+...
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHH
Confidence 47899999999999987766544
No 96
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.63 E-value=0.015 Score=56.88 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=18.2
Q ss_pred CceeecCCCCchHHHHHHHHHhc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH 423 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~ 423 (763)
..|+...+|.|||+..+..++..
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHH
Confidence 48999999999999866555443
No 97
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.54 E-value=0.0099 Score=62.55 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=33.7
Q ss_pred CceeecCCCCchHHHHHHHHHhcccCCCCcccccC-CCCCCCCcccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSA-SQPSDGGIEGYDI 448 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~-sl~~~w~~ei~~~ 448 (763)
.+|++..+|.|||+..+..++.. ....++++|. .+..+|..++.++
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILEL--GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH--TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHhh--cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999988777654 3457888887 4555666655544
No 98
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.52 E-value=0.012 Score=63.38 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=17.3
Q ss_pred CceeecCCCCchHHHHHHHHHh
Q 004295 401 GGILADAMGLGKTVMTIALLLT 422 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~ 422 (763)
.+|++..+|.|||+..+..++.
T Consensus 60 ~~lv~~~TGsGKT~~~~~~~~~ 81 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIAALQ 81 (394)
T ss_dssp CEEECCCSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHH
Confidence 4799999999999986554443
No 99
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.0085 Score=47.99 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=36.8
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCCC
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~~ 50 (763)
.++.+.+|.+|-|.... ..+..|.+++.|+|+||+.||+.+..
T Consensus 15 ~~e~i~qF~~iTg~~~~--~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 15 LKGLIQQFTTITGASES--VGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHHTCCCHH--HHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCCHH--HHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 46889999999997633 68888899999999999999998643
No 100
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.93 E-value=0.012 Score=47.79 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=35.4
Q ss_pred cHHHHhhhhcccC-CCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 6 TDEVLSTVRSVVG-PEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 6 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
.++.+.+|.+|-| .... .++..|..++.|+|.||+.||++..
T Consensus 18 ~~e~i~qF~~ITg~~d~~--~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMD--QCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHHCCSCHH--HHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4678999999999 4333 6888889999999999999999854
No 101
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.83 E-value=0.023 Score=61.84 Aligned_cols=48 Identities=13% Similarity=-0.035 Sum_probs=33.4
Q ss_pred CceeecCCCCchHHHHHHHHHhcc----cCCCCcccccCC-CCCCCCcccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHS----QRGGLSGIQSAS-QPSDGGIEGYDI 448 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~----~~~~~l~v~p~s-l~~~w~~ei~~~ 448 (763)
..|++..+|.|||++.+..++... .....++++|.. +..+|..++..+
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 489999999999999887666543 234678888874 445565554443
No 102
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.80 E-value=0.045 Score=54.33 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=16.2
Q ss_pred CceeecCCCCchHHHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIALLL 421 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~ 421 (763)
..|+....|.|||+..+..++
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l 73 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAAL 73 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 479999999999998544333
No 103
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.78 E-value=0.026 Score=56.00 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=31.1
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----CCCCcccccC-CCCCCCCccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSA-SQPSDGGIEGYD 447 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~-sl~~~w~~ei~~ 447 (763)
..|++..+|.|||+..+..+..... ....++++|. .+..+|..++..
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 4799999999999988776665422 2256778886 344455444433
No 104
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.63 E-value=0.028 Score=60.95 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=31.7
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----CCCCcccccCC-CCCCCCcccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSAS-QPSDGGIEGYDI 448 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~s-l~~~w~~ei~~~ 448 (763)
..|++..+|.|||+.++..++.... ....++++|.. +..+|..++..+
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 4899999999999987766554322 23567888873 444555544443
No 105
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.32 E-value=0.042 Score=67.59 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=31.4
Q ss_pred ccCceeecCCCCchHHHHHHHHHhccc---CCCCcccccC-CCCCCCCcccc
Q 004295 399 ARGGILADAMGLGKTVMTIALLLTHSQ---RGGLSGIQSA-SQPSDGGIEGY 446 (763)
Q Consensus 399 ~~GGILADEMGLGKTIq~LaLI~~~~~---~~~~l~v~p~-sl~~~w~~ei~ 446 (763)
.++|++...+|.|||++++.++..... ...+++++|. .+..+|..++.
T Consensus 300 ~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~ 351 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQ 351 (1038)
T ss_dssp GGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHH
Confidence 468999999999999999776643321 1246677774 34445544443
No 106
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.25 E-value=0.038 Score=55.48 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=29.6
Q ss_pred CceeecCCCCchHHHHHHHHHhc--------ccCCCCcccccC-CCCCCCCccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH--------SQRGGLSGIQSA-SQPSDGGIEGYD 447 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~--------~~~~~~l~v~p~-sl~~~w~~ei~~ 447 (763)
..|++..+|.|||+..+..++.. ......++++|. .+..+|..++..
T Consensus 64 ~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 119 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK 119 (236)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 47999999999999866544432 122346778887 344455444443
No 107
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.19 E-value=0.041 Score=44.11 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=35.2
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
.++++.++.+.+ .| ++.-.++++|..++||+++|++.+|.+..
T Consensus 7 ~~~~~~I~~L~~-MG--F~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 7 GVDEKALKHITE-MG--FSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp SSCHHHHHHHHT-TT--CCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHH-cC--CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 477888777776 36 55557999999999999999999999844
No 108
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.19 E-value=0.073 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.3
Q ss_pred CceeecCCCCchHHHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIALLL 421 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~ 421 (763)
..|++..+|.|||+..+..++
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l 83 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIAL 83 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999998554443
No 109
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.16 E-value=0.041 Score=59.10 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=31.5
Q ss_pred cCceeecCCCCchHHHHHHHHHhcc----cCCCCcccccCC-CCCCCCcccc
Q 004295 400 RGGILADAMGLGKTVMTIALLLTHS----QRGGLSGIQSAS-QPSDGGIEGY 446 (763)
Q Consensus 400 ~GGILADEMGLGKTIq~LaLI~~~~----~~~~~l~v~p~s-l~~~w~~ei~ 446 (763)
+..|++..+|.|||++++..++... .....++++|.. +..+|..++.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 96 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQ 96 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHH
Confidence 3689999999999999876665442 233577888875 3344444443
No 110
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.89 E-value=0.048 Score=44.15 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=35.3
Q ss_pred HHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCCC
Q 004295 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50 (763)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~~ 50 (763)
+.+..|.+|-|.... .....|..++.|+|+||+.||+.+..
T Consensus 19 ~~i~qF~~iTg~~~~--~A~~~Le~~~WdLe~Al~~ff~~~~~ 59 (66)
T 2dzl_A 19 VMINQFVLAAGCAAD--QAKQLLQAAHWQFETALSTFFQETNI 59 (66)
T ss_dssp HHHHHHHHHHCCCHH--HHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 889999999997444 57888899999999999999998554
No 111
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.15 E-value=0.066 Score=58.06 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=31.9
Q ss_pred CceeecCCCCchHHHHHHHHHhcc----cCCCCcccccCC-CCCCCCcccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHS----QRGGLSGIQSAS-QPSDGGIEGYDI 448 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~----~~~~~l~v~p~s-l~~~w~~ei~~~ 448 (763)
..|++..+|.|||++.+..++... .....++++|.. +..+|..++..+
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 479999999999999766655432 233567888874 444555554443
No 112
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.15 E-value=0.12 Score=52.72 Aligned_cols=166 Identities=16% Similarity=0.292 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhhh--eeecccccCcCCCccccCCCceEEEEEe------------cCCHHHHHHHHHHHHHHHHHHHH
Q 004295 505 ERGLKLVQSILKPIM--LRRTKSSTDREGRPILVLPPADMQVIYC------------ELTEAEKDFYEALFKRSKVKFDQ 570 (763)
Q Consensus 505 ~~~~~~L~~iL~pi~--LRRtK~~v~~~G~pil~LPpk~~~vv~v------------~LS~~Er~lY~~i~~~~~~~~~~ 570 (763)
...+..+..-|+|+= +|+.+.+. +| ....++| .+|+.|-++++.+++.....
T Consensus 46 ~~~I~~IN~~L~~l~~~Ir~~~~q~--~g---------~~~y~lVN~~~d~~~klaT~yt~~Ei~~fk~lle~i~~s--- 111 (238)
T 3nw0_A 46 EDFINNINSVLESLYIEIKRGVTED--DG---------RPIYALVNLATTSISKMATDFAENELDLFRKALELIIDS--- 111 (238)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEECTT--TC---------CEEEEEEESSSCTTHHHHTTSCHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhhhcCcEEEEeecCC--CC---------CEEEEEEeCCCCHHHhhccCCCHHHHHHHHHHHHHHHhC---
Confidence 356778888899865 46666542 22 2333444 48899999998888764321
Q ss_pred HhhhcccccchHHHHHHHHHHHhhccCcccccccCCCcchHHHHHHHHHHhcCCCCCCcCCCCCCCcHHHHHHHHHHHhc
Q 004295 571 FVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQDYSDLNKLAKRFLKGSSNALEGEDKDVPSRAYVQEVVEELQK 650 (763)
Q Consensus 571 ~~~~g~~~~~~~~il~~LlrLRqiC~HP~Lv~~~~~~~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 650 (763)
..|.. ....+ ++|+. + +. ...-.-.+.+.++++|.+.+.-.. ..+.-.-+...+-++...+.+
T Consensus 112 --~~~~~--s~~~~----lnl~~---~---~~--~k~l~~~eae~lL~~lv~~gWl~~-~~g~~~l~~R~l~El~~~l~~ 174 (238)
T 3nw0_A 112 --ETGFA--SSTNI----LNLVD---Q---LK--GKKMRKKEAEQVLQKFVQNKWLIE-KEGEFTLHGRAILEMEQYIRE 174 (238)
T ss_dssp --SSSCE--EHHHH----HGGGT---T---CS--SSCCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHHHHH
T ss_pred --CCCce--eHHHH----HHHHh---h---cc--cCCCCHHHHHHHHHHHHHhcchhh-hCCEEEecCccHHHHHHHHHH
Confidence 12221 11122 22221 1 00 011122355667777766664211 111111122333344444433
Q ss_pred ---CCCCCCCcccccccCceec-CCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 ---GEQGECPICLEAFEDAVLT-PCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ---~~~~eC~IC~~~~~~~~it-~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
+...+|.||.+.+..-..- .|.|.|-..|+..+++......||.|+.+...
T Consensus 175 ~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 175 TYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp HCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred hcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4578999999966544433 39999999999999988778899999987543
No 113
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.03 E-value=0.094 Score=51.17 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=24.7
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----CCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~s 436 (763)
..|+...+|.|||+..+..++.... ....++++|..
T Consensus 42 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 42 DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 5789999999999887755544321 22467777763
No 114
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.84 E-value=0.049 Score=67.96 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=49.6
Q ss_pred ccCCCCchHHHHhHHHHHhc-ccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCC
Q 004295 330 TLKCELRPYQKQALHWMVQL-EKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAM 408 (763)
Q Consensus 330 ~l~~~LrpYQkqgl~WMl~r-E~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEM 408 (763)
.|.-+++|||++++.+++.. +.+ .....|++.++
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g---------------------------------------------~p~d~ll~~~T 633 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQP---------------------------------------------LAMDRLVCGDV 633 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSS---------------------------------------------SCCEEEEECCC
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcC---------------------------------------------CcCcEEEECCC
Confidence 35567899999999999863 110 11257999999
Q ss_pred CCchHHHHHHHHHh-cccCCCCcccccCC-CCCCCCccccccc
Q 004295 409 GLGKTVMTIALLLT-HSQRGGLSGIQSAS-QPSDGGIEGYDIS 449 (763)
Q Consensus 409 GLGKTIq~LaLI~~-~~~~~~~l~v~p~s-l~~~w~~ei~~~~ 449 (763)
|.|||+.++..+.. ......+++++|+. +..+|..++.++.
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHh
Confidence 99999998744322 22223578888875 4446666655443
No 115
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.71 E-value=0.084 Score=52.31 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=28.5
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----CCCCcccccCC-CCCCCCcccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSAS-QPSDGGIEGY 446 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~s-l~~~w~~ei~ 446 (763)
..|++..+|.|||+..+..++.... ....++++|.. +..+|..++.
T Consensus 43 ~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 93 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETL 93 (219)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHH
Confidence 4789999999999986554443321 23467788863 3334444333
No 116
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.20 E-value=0.1 Score=43.03 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=33.4
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
+++++.+.+..++.--++.-+++++|+.++||+++|++.+|++.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 34444445555555457777899999999999999999999983
No 117
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.08 E-value=0.15 Score=51.92 Aligned_cols=45 Identities=18% Similarity=-0.089 Sum_probs=28.0
Q ss_pred CceeecCCCCchHHHHHHHHHhc----ccCCCCcccccCC-CCCCCCccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTH----SQRGGLSGIQSAS-QPSDGGIEG 445 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~----~~~~~~l~v~p~s-l~~~w~~ei 445 (763)
..|+...+|.|||+..+..++.. ......++++|.. +..+|..++
T Consensus 82 ~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~ 131 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQF 131 (249)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHH
Confidence 57888999999999866544332 2223467788863 333444433
No 118
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.69 E-value=0.16 Score=51.49 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CceeecCCCCchHHHHHHHHHhccc-------------CCCCcccccC-CCCCCCCcccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ-------------RGGLSGIQSA-SQPSDGGIEGY 446 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~-------------~~~~l~v~p~-sl~~~w~~ei~ 446 (763)
..|++..+|.|||+..+..++.... ....++++|. .+..+|..++.
T Consensus 62 ~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ 121 (253)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHH
Confidence 4788999999999987655543211 1246677776 33344544433
No 119
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.27 E-value=0.13 Score=38.96 Aligned_cols=39 Identities=10% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 9 VLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
..+.++.++.=-.+.-.++++|+.++||+++|++.+|.|
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 344444444444677789999999999999999999987
No 120
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.16 E-value=0.14 Score=51.48 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=28.2
Q ss_pred CceeecCCCCchHHHHHHHHHhcc----cCCCCcccccCC-CCCCCCccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHS----QRGGLSGIQSAS-QPSDGGIEG 445 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~----~~~~~l~v~p~s-l~~~w~~ei 445 (763)
..|+....|.|||+..+..++... .....++++|.. +..+|..++
T Consensus 69 ~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 118 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVI 118 (237)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHH
Confidence 378899999999998665554432 223567777763 333443333
No 121
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=91.02 E-value=0.15 Score=36.48 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=28.5
Q ss_pred HHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhc
Q 004295 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIF 45 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~ 45 (763)
++.++.+.+. | .+.-.++++|..++||+++|++.+|
T Consensus 5 ~~~i~~L~~m-G--f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-G--FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-T--CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-C--CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4566667765 6 4555789999999999999999876
No 122
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=90.64 E-value=0.23 Score=38.20 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHhhhhcccCCCC-ChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 8 EVLSTVRSVVGPEF-SNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 8 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
++.+.+..++.=-. +.-.++++|+.++||+++||+.+|.++
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 44555555555446 446789999999999999999999874
No 123
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=90.42 E-value=0.2 Score=41.87 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=33.9
Q ss_pred HhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 10 LSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
.+++|.|||+.+++-.++++.-.++-|+++|+|.+|..
T Consensus 38 Ld~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 38 LDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 57899999999998777777788999999999999975
No 124
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=90.15 E-value=0.23 Score=37.23 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=30.0
Q ss_pred hhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 12 TVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
.+..++.-..+...++++|.+|++|+++|.|.+|.+..
T Consensus 7 aI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp HHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 33444444577778999999999999999999998753
No 125
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=89.58 E-value=0.28 Score=35.89 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=30.9
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
+++.++.+.+ .| .+.-.++++|+.++||+++|+|..|++
T Consensus 4 ~e~~i~~L~~-MG--F~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSG-MG--FTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHT-TT--SCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHH-cC--CCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4556666665 35 566689999999999999999999976
No 126
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=89.54 E-value=0.21 Score=38.36 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.4
Q ss_pred hhhcccCCCC-ChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 12 TVRSVVGPEF-SNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 12 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
.+..++.=-. +.-.++++|..++||+++||+.+|.+|
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 3333333335 445789999999999999999999874
No 127
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=89.45 E-value=0.38 Score=53.13 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=16.8
Q ss_pred CceeecCCCCchHHHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIALLL 421 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~ 421 (763)
..|++..+|.|||+..+..++
T Consensus 95 d~i~~a~TGsGKT~a~~lpil 115 (434)
T 2db3_A 95 DLMACAQTGSGKTAAFLLPIL 115 (434)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHH
Confidence 479999999999998665444
No 128
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.83 E-value=0.34 Score=52.21 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=25.0
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----CCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~s 436 (763)
..|++..+|.|||+..+..++.... ....++++|..
T Consensus 66 ~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred eEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 5799999999999997555443222 22467788874
No 129
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=88.21 E-value=0.3 Score=36.48 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHhhhhcccCCCCCh-HHHHHHHHhCCCChHHHHHHhccC
Q 004295 9 VLSTVRSVVGPEFSN-MDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 9 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
.++++.+. | .++ -.++++|..++||+++||+.+|.|
T Consensus 10 ~i~~L~~M-G--F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 10 QLRQLNDM-G--FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHT-T--CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHc-C--CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 34444443 4 332 457999999999999999999975
No 130
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=87.13 E-value=0.36 Score=35.86 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=33.5
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhc
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIF 45 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~ 45 (763)
-.|+.++.|.+|-|-..+ -..+..|..++-|++.||+.||
T Consensus 4 d~de~ia~F~~iTG~~d~-~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 4 DREMILADFQACTGIENI-DEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp CHHHHHHHHHHHHCCCCH-HHHHHHHHHTTTCHHHHHTTC-
T ss_pred cHHHHHHHHHHHHCCCCH-HHHHHHHHHcCCcHHHHHHHHc
Confidence 368999999999996553 2688889999999999999987
No 131
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.04 E-value=0.34 Score=42.47 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=31.6
Q ss_pred HHHhhhhcccCC-CCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 8 EVLSTVRSVVGP-EFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 8 ~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
++.+.++.++-- .++..+++.+|+.|++|+++||+.+|+|..
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 344444444433 366678999999999999999999999953
No 132
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.35 E-value=0.64 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=16.2
Q ss_pred CceeecCCCCchHHHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIALLL 421 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~ 421 (763)
..|+.-..|-|||+..+..++
T Consensus 59 ~~l~~apTGsGKT~~~~l~~~ 79 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLMPGF 79 (228)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHH
Confidence 468888999999988655443
No 133
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=86.24 E-value=0.35 Score=42.02 Aligned_cols=32 Identities=31% Similarity=0.659 Sum_probs=26.7
Q ss_pred CCCCCccccc-ccCcee--cCCcccccHHHHhhhh
Q 004295 653 QGECPICLEA-FEDAVL--TPCAHRLCRECLLGSW 684 (763)
Q Consensus 653 ~~eC~IC~~~-~~~~~i--t~C~H~fC~~Ci~~~~ 684 (763)
...|+||.+. ..+++. +.|+|.||..|+....
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 3689999974 677777 8999999999999743
No 134
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=85.94 E-value=0.51 Score=38.86 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=35.6
Q ss_pred ccccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 3 TKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
..++++.++++.+. | .+.-.++++|..++||+++|++.+|.++.
T Consensus 26 ~~~~~~~v~~L~~M-G--F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 26 SDIDQSSVDTLLSF-G--FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CSSCHHHHHHHHHH-T--CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHc-C--CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 35677777777764 6 45558999999999999999999999854
No 135
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=85.70 E-value=0.78 Score=45.96 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=23.2
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----C-CCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----R-GGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~-~~~l~v~p~s 436 (763)
..|+.-..|-|||+..+..++.... . ...++++|..
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~ 108 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTR 108 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCH
Confidence 4788889999999986544433211 1 2467777763
No 136
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=84.47 E-value=0.96 Score=34.58 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=35.1
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
++...+.+...|...++..+++++|..++||++.|-|+.+.
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34556677777888888889999999999999999999876
No 137
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=83.44 E-value=0.51 Score=37.05 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHhhhhcccCCCCC-hHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 9 VLSTVRSVVGPEFS-NMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 9 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
.++++.+. | .+ .-.++++|..++||+++||+.+|.++
T Consensus 20 qi~~L~~M-G--F~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 20 QLRQLNDM-G--FFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHH-T--CCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHc-C--CCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 34444443 4 33 24679999999999999999999874
No 138
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.97 E-value=0.88 Score=36.70 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCChHHHHHHhccCCCC
Q 004295 24 MDIIRALHMANHDPAAAINIIFDTPNF 50 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~ain~~~d~~~~ 50 (763)
-..+++|..++||+++||+..|.++..
T Consensus 35 ~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 35 NANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 356999999999999999999998554
No 139
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.92 E-value=1.3 Score=35.41 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.7
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCC-ChHHHHHHhccCCC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANH-DPAAAINIIFDTPN 49 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ain~~~d~~~ 49 (763)
++++.++++.+ .| .+.-.++++|..++| |+|+|+|-+|.++.
T Consensus 18 ~~e~~i~~L~~-MG--F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 18 KHGSALDVLLS-MG--FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp SCCCHHHHHHH-HT--CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHH-cC--CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 35566666666 36 555689999999998 99999999999854
No 140
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.57 E-value=0.54 Score=37.47 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=35.2
Q ss_pred ccccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 3 TKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
..++++.++++.+ .| .+.-.++++|+.++||+++|++.+|.+
T Consensus 6 ~~~~~~~v~~L~~-MG--F~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 6 SGPPEDCVTTIVS-MG--FSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCCCHHHHHHHHH-HT--CCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cC--CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4577888888887 47 455589999999999999999999997
No 141
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=82.48 E-value=0.88 Score=49.41 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=30.1
Q ss_pred CceeecCCCCchHHHHHHHHHhcc-cCCCCcccccCC-CCCCCCcccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHS-QRGGLSGIQSAS-QPSDGGIEGYDI 448 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~-~~~~~l~v~p~s-l~~~w~~ei~~~ 448 (763)
..|+.-..|.|||+..+..++... .....++++|.. +..+|...+..+
T Consensus 38 ~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 38 SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 368888999999996655544332 234577888873 444555544443
No 142
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=82.20 E-value=0.97 Score=55.55 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=46.0
Q ss_pred CccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeecCC
Q 004295 329 STLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILADAM 408 (763)
Q Consensus 329 ~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILADEM 408 (763)
..+.-+|+|||++++.++... ...|++...
T Consensus 81 ~~~~f~L~~~Q~eai~~l~~g--------------------------------------------------~~vLV~apT 110 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCIDRG--------------------------------------------------ESVLVSAHT 110 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHHHT--------------------------------------------------CEEEEECCT
T ss_pred HhCCCCCCHHHHHHHHHHHcC--------------------------------------------------CCEEEECCC
Confidence 345557999999999998642 247999999
Q ss_pred CCchHHHHHHHHHhcc-cCCCCcccccC-CCCCCCCcccc
Q 004295 409 GLGKTVMTIALLLTHS-QRGGLSGIQSA-SQPSDGGIEGY 446 (763)
Q Consensus 409 GLGKTIq~LaLI~~~~-~~~~~l~v~p~-sl~~~w~~ei~ 446 (763)
|.|||+.++-.|+... .....++++|+ .+..+|..++.
T Consensus 111 GSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 111 SAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp TSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHH
Confidence 9999998755444332 23356778887 33334444433
No 143
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.07 E-value=1.1 Score=35.27 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=34.1
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
.+.++-++++.+.-.+.... .|...|..++||+++|||+.|.-
T Consensus 7 ~~~ee~l~~L~emFP~ld~~-~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQE-VIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHH-HHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHCCCCCHH-HHHHHHHHcCCCHHHHHHHHHcC
Confidence 35788888888888876552 35555699999999999999985
No 144
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.96 E-value=1.9 Score=36.36 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=34.0
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
.++++.++++.+ .| .+.-.++++|..++||+|+|+|-+|.+
T Consensus 27 ~~~e~~i~~L~~-MG--F~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 27 RVDEAALRQLTE-MG--FPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp SCCHHHHHHHHH-HT--CCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCCHHHHHHHHH-cC--CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 367777888777 46 555589999999999999999999997
No 145
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=81.90 E-value=0.71 Score=38.04 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=28.3
Q ss_pred HHhhhhcccCCCCC-hHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 9 VLSTVRSVVGPEFS-NMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 9 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
.++++... | +. .-.++++|..++||+++||+.+|.++.
T Consensus 32 qi~qL~eM-G--F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 32 ELEELKAL-G--FANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp HHHHHHHH-T--CCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHc-C--CCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 44445543 4 33 246799999999999999999999843
No 146
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=81.68 E-value=1.2 Score=32.75 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=32.2
Q ss_pred HHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
++.+.++..|...++.-+++|+|-.+.||++.|-|+...
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345566777777788789999999999999999999863
No 147
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.53 E-value=0.84 Score=49.27 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=15.6
Q ss_pred CceeecCCCCchHHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIALL 420 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI 420 (763)
..|++..+|.|||+..+..+
T Consensus 54 ~~lv~a~TGsGKT~~~~~~~ 73 (417)
T 2i4i_A 54 DLMACAQTGSGKTAAFLLPI 73 (417)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEcCCCCHHHHHHHHHH
Confidence 47889999999998765433
No 148
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=81.40 E-value=1.2 Score=49.35 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=24.7
Q ss_pred CceeecCCCCchHHHHHHHHHhcccC----CCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQR----GGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~----~~~l~v~p~s 436 (763)
..|++...|.|||+..+-.++..... ...++++|..
T Consensus 133 ~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp EEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred cEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 47889999999999965555433322 1467777764
No 149
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.19 E-value=1.2 Score=35.58 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=32.4
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCC-ChHHHHHHhccCC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANH-DPAAAINIIFDTP 48 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ain~~~d~~ 48 (763)
.+++.++++.+ .| .+.-.++++|..++| |+|+|+|-+|.+.
T Consensus 8 ~~e~~v~~L~~-MG--F~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 8 SSPSLLEPLLA-MG--FPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CSCSSHHHHHH-TS--CCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHH-cC--CCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 35566666666 46 555689999999988 9999999999983
No 150
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.71 E-value=1.2 Score=36.71 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=35.3
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCCC-ChHHHHHHhccCCC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMANH-DPAAAINIIFDTPN 49 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ain~~~d~~~ 49 (763)
.++++.++++.+ .| .+.-.++++|..++| |+|+|+|-+|.+..
T Consensus 7 ~~~e~~v~~L~~-MG--F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 7 GLDESVIIQLVE-MG--FPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SSCHHHHHHHHH-HS--CCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-cC--CCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 478888888888 47 555689999999986 89999999999743
No 151
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=79.59 E-value=0.58 Score=52.78 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=30.3
Q ss_pred CceeecCCCCchHHHHHHHHHhccc----CCCCcccccCC-CCCCCCccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ----RGGLSGIQSAS-QPSDGGIEGYD 447 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~----~~~~l~v~p~s-l~~~w~~ei~~ 447 (763)
..||...+|.|||++.+..++.... ...+++++|.. +..+|...+..
T Consensus 160 ~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~ 211 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE 211 (508)
T ss_dssp CEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHH
Confidence 5799999999999986655544322 22577888875 34444444433
No 152
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=79.21 E-value=1.9 Score=43.10 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=15.7
Q ss_pred CceeecCCCCchHHHHHHHHH
Q 004295 401 GGILADAMGLGKTVMTIALLL 421 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~ 421 (763)
..|+.-..|-|||+..+..++
T Consensus 68 ~~l~~apTGsGKT~~~~l~~l 88 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLLPAI 88 (242)
T ss_dssp CEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEECCCcCHHHHHHHHHHH
Confidence 367777899999998654443
No 153
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.81 E-value=1.2 Score=50.84 Aligned_cols=47 Identities=13% Similarity=-0.031 Sum_probs=28.4
Q ss_pred CceeecCCCCchHHHHHHHHHh----ccc----CCCCcccccCC-CCCCCCccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLT----HSQ----RGGLSGIQSAS-QPSDGGIEGYD 447 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~----~~~----~~~~l~v~p~s-l~~~w~~ei~~ 447 (763)
..|+....|.|||+..+..++. .+. ....++++|.. +..+|..++..
T Consensus 62 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 4688889999999985544432 221 12467788873 44455544444
No 154
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.81 E-value=1.4 Score=32.72 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=31.9
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
.++++.++++.+ .| .+.-.++++|..+| |+|+|++.+|..+
T Consensus 7 ~~~~~~v~~L~~-MG--F~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MG--FTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp SSCHHHHHHHHH-HH--CCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHH-cC--CCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 467777777777 46 44457999998885 9999999999753
No 155
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=77.20 E-value=1.8 Score=51.50 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=31.6
Q ss_pred CceeecCCCCchHHHHHHHHHhccc-CCCCcccccCC-CCCCCCcccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ-RGGLSGIQSAS-QPSDGGIEGYDI 448 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~-~~~~l~v~p~s-l~~~w~~ei~~~ 448 (763)
..||+.+.|.|||+.++..++.... ....++++|+. +..+|...+..+
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 5799999999999998766654322 23567788873 334454444443
No 156
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.97 E-value=1.8 Score=36.37 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=33.8
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
++++.++++.+. | ++.-.++++|..++||+++|++.+|.++.
T Consensus 28 ~~ee~I~~Lv~M-G--F~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 28 PSQESINQLVYM-G--FDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CCHHHHHHHHHH-S--CCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHc-C--CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 456777777775 6 55568999999999999999999999533
No 157
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.22 E-value=1.9 Score=34.36 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=34.2
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhC-CCChHHHHHHhccCCC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMA-NHDPAAAINIIFDTPN 49 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~ain~~~d~~~ 49 (763)
+++++.++++.+ .| .+.-.++++|..+ ++|+|+|+|-+|++..
T Consensus 7 ~~~~~~v~~L~~-MG--F~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 7 GAELTALESLIE-MG--FPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCCCHHHHHHT-TT--CCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-cC--CCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 567777777777 46 5555899999888 5999999999999743
No 158
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=75.98 E-value=1.4 Score=33.62 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=33.0
Q ss_pred HHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
+...+.++..|+.-++.-+++++|..++||+|.|-|+...
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3444557777777788889999999999999999999864
No 159
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.90 E-value=1 Score=34.70 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=29.2
Q ss_pred HHHHhhhhcccCCCCCh-HHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 7 DEVLSTVRSVVGPEFSN-MDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
++.++++++. | +++ -..+++|..++||+++||+.+|.++.
T Consensus 10 ~~~l~~L~~M-G--F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 10 QVQLEQLRSM-G--FLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHHHH-T--CCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHc-C--CCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3445555554 5 443 34699999999999999999998643
No 160
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=75.84 E-value=1.7 Score=49.29 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=27.7
Q ss_pred CceeecCCCCchHHHHHHHHHh----cccC----CCCcccccCC-CCCCCCccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLT----HSQR----GGLSGIQSAS-QPSDGGIEGYD 447 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~----~~~~----~~~l~v~p~s-l~~~w~~ei~~ 447 (763)
..|++-..|.|||+..+-.++. .... ...++++|.. +..+|..++..
T Consensus 113 ~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 113 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 4688889999999985544332 2211 2467788863 33344444433
No 161
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=75.84 E-value=1.7 Score=32.91 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=30.8
Q ss_pred HhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhc
Q 004295 10 LSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIF 45 (763)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~ 45 (763)
.+.+...|+-..+..+++++|..++||++.|-|+.+
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356677777778888999999999999999999875
No 162
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.76 E-value=2.6 Score=42.89 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=22.5
Q ss_pred CceeecCCCCchHHHHHHHHHhc--------ccCCCCcccccC
Q 004295 401 GGILADAMGLGKTVMTIALLLTH--------SQRGGLSGIQSA 435 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~--------~~~~~~l~v~p~ 435 (763)
..|++-..|-|||+..+..++.. ......++++|.
T Consensus 93 ~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt 135 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPT 135 (262)
T ss_dssp CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCC
Confidence 36888889999999865444321 112346677776
No 163
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.68 E-value=1.1 Score=36.99 Aligned_cols=45 Identities=31% Similarity=0.625 Sum_probs=35.3
Q ss_pred CCCCCCCcccccccCceecCC----cccccHHHHhhhhcCC---CCCCCCCC
Q 004295 651 GEQGECPICLEAFEDAVLTPC----AHRLCRECLLGSWKTP---TSGLCPVC 695 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C----~H~fC~~Ci~~~~~~~---~~~~CP~C 695 (763)
+....|-+|.+.+++.-+..| .|.||..|-.++++.+ .+.-||.-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 445789999999999877777 8999999999999753 34456643
No 164
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=74.74 E-value=1.2 Score=34.93 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred hhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 12 TVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
.+..+|+=-++.-+..++|.+++||+|||+.-.|..+.
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34455555577778999999999999999999998743
No 165
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.64 E-value=3.1 Score=44.73 Aligned_cols=53 Identities=26% Similarity=0.499 Sum_probs=40.5
Q ss_pred CCCCCcccccccCcee-cCCcccccHHH--HhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVL-TPCAHRLCREC--LLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~i-t~C~H~fC~~C--i~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
+..||+-...|..|+- ..|.|.-|.+- +.........-.||.|...+...+|+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 3789999999999986 56999977664 33333344578899999998887764
No 166
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=74.16 E-value=1 Score=52.89 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=25.8
Q ss_pred CceeecCCCCchHHHHHHHHHhc-ccCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTH-SQRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~-~~~~~~l~v~p~s 436 (763)
..|++-+.|-|||+++.-.++.. ...+..++++|..
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r 78 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLR 78 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcH
Confidence 47999999999999985544432 2234577888875
No 167
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=71.66 E-value=4.9 Score=33.85 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=33.0
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCC-CChHHHHHHhccCC
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMAN-HDPAAAINIIFDTP 48 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~ain~~~d~~ 48 (763)
.++++.++++.+ .| ++.-.++++|..++ +|+++|+|-+|.+.
T Consensus 27 ~~~e~~v~~L~~-MG--F~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 27 VANEEIVAQLVS-MG--FSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CCCHHHHHHHHH-HT--CCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHH-cC--CCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 357777878777 46 55558999997776 69999999999973
No 168
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=69.44 E-value=2.3 Score=37.60 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 24 MDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
-.++++|..++||+++||+.+|.++.
T Consensus 82 ~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 82 ELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 46899999999999999999998753
No 169
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=68.70 E-value=3 Score=46.59 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=36.1
Q ss_pred CceeecCCCCchHHHHHHHHHhccc------CCCCcccccC-CCCCCCCccccccc
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQ------RGGLSGIQSA-SQPSDGGIEGYDIS 449 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~------~~~~l~v~p~-sl~~~w~~ei~~~~ 449 (763)
.+|+++++|.|||++++..+..... ....++++|. .+..+|..++..+.
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5899999999999998777654322 3457888888 56667777666543
No 170
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=68.04 E-value=2.3 Score=48.14 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=22.3
Q ss_pred CceeecCCCCchHHHHHHHHHhcccCCCCcccccC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSA 435 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~ 435 (763)
..++.-..|.|||+..+-.++.. .+..++++|+
T Consensus 42 d~lv~apTGsGKTl~~~lp~l~~--~g~~lvi~P~ 74 (523)
T 1oyw_A 42 DCLVVMPTGGGKSLCYQIPALLL--NGLTVVVSPL 74 (523)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHS--SSEEEEECSC
T ss_pred CEEEECCCCcHHHHHHHHHHHHh--CCCEEEECCh
Confidence 37888899999998654333322 2446777776
No 171
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.40 E-value=3.3 Score=49.82 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=45.1
Q ss_pred CCCCCcccccccCceecCCc-ccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCA-HRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~-H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
...|||-.+.|.+|++++.| +.+-+.+|..++.. .+.||.=|.+++..+++
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCE
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCccccc
Confidence 46799999999999999998 58999999999975 67899999999877664
No 172
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=66.50 E-value=3.7 Score=50.94 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=25.4
Q ss_pred CceeecCCCCchHHHHHHHHHhcc-cCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHS-QRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~-~~~~~l~v~p~s 436 (763)
..|++-+.|-|||+..+-.|+... ....+++++|..
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Ptr 237 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 237 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcH
Confidence 479999999999998765555432 233467777763
No 173
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.70 E-value=3.4 Score=34.94 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=33.2
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCCC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPNF 50 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~~ 50 (763)
++++.+++|... | ++.-.++++|..+++|+|+|++-+|+.+..
T Consensus 20 ~n~~~I~qL~~M-G--F~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 20 IMSRLIKQLTDM-G--FPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHH-T--CCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred cCHHHHHHHHHc-C--CCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 345666666663 5 555578999999999999999999998543
No 174
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=65.38 E-value=2.3 Score=50.00 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=24.4
Q ss_pred CceeecCCCCchHHHHH-HHHHhcc-cCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTI-ALLLTHS-QRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~L-aLI~~~~-~~~~~l~v~p~s 436 (763)
..|++-+.|-|||+++. +++.... .....++++|..
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~r 78 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLK 78 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSG
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 37999999999999984 4432222 234567788873
No 175
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=64.76 E-value=7 Score=29.07 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=37.7
Q ss_pred ccccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 3 TKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
..|+|++++..+-++-.++-+ -|||.|.+.+=|+-.|||-.+.
T Consensus 6 ~~vPe~li~q~q~VLqgksR~-vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 6 SVIPEELISQAQVVLQGKSRS-VIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp GGSCHHHHHHHHHHSTTCCHH-HHHHHHHHTTTCHHHHHHHHHC
T ss_pred ccCcHHHHHHHHHHhcCCcHH-HHHHHHHHhCccHHHHHHHHhc
Confidence 468999999999999887765 5999999999999999998775
No 176
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=63.27 E-value=4.1 Score=46.88 Aligned_cols=33 Identities=21% Similarity=0.024 Sum_probs=23.0
Q ss_pred CceeecCCCCchHHHHHHHHHhcccCCCCcccccC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQRGGLSGIQSA 435 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~ 435 (763)
..|+.-..|.|||+..+-.++.. .+.+++++|+
T Consensus 61 d~lv~~pTGsGKTl~~~lpal~~--~g~~lVisP~ 93 (591)
T 2v1x_A 61 EVFLVMPTGGGKSLCYQLPALCS--DGFTLVICPL 93 (591)
T ss_dssp CEEEECCTTSCTTHHHHHHHHTS--SSEEEEECSC
T ss_pred CEEEEECCCChHHHHHHHHHHHc--CCcEEEEeCH
Confidence 36788889999999654444433 3457788887
No 177
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=62.88 E-value=3.2 Score=48.67 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=25.3
Q ss_pred CceeecCCCCchHHHHHHHHHhc-c-cCCCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTH-S-QRGGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~-~-~~~~~l~v~p~s 436 (763)
..|++-+.|-|||+++.-.++.. . .....++++|..
T Consensus 48 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r 85 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLR 85 (715)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCH
T ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcH
Confidence 47999999999999985555422 1 234567778875
No 178
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=61.13 E-value=6.2 Score=37.81 Aligned_cols=39 Identities=28% Similarity=0.186 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 723 ~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.+.|+.+|.++|.... .+.|+|||+++....+.+...|+
T Consensus 29 ~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~ 67 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLY 67 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 5789999999998742 47899999999999999988774
No 179
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=59.72 E-value=7.6 Score=47.57 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=23.7
Q ss_pred CceeecCCCCchHHHHHHHHHhcccC-CCCcccccCC
Q 004295 401 GGILADAMGLGKTVMTIALLLTHSQR-GGLSGIQSAS 436 (763)
Q Consensus 401 GGILADEMGLGKTIq~LaLI~~~~~~-~~~l~v~p~s 436 (763)
..|++-.-|-|||+..+-.|...... ..+++++|..
T Consensus 56 ~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~Ptr 92 (997)
T 4a4z_A 56 SVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIK 92 (997)
T ss_dssp EEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 37888899999998655444433322 3367777763
No 180
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=59.16 E-value=4.8 Score=43.48 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 8 EVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
++.+.+..++.=-++.-+++++|++++||+++|++.+|.|.
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gi 207 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 207 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35555666665557777899999999999999999999983
No 181
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=59.12 E-value=11 Score=30.51 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=29.8
Q ss_pred HHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccC
Q 004295 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
++.+++++.+..+ ...=-|.+.|...++|+|++||..|++
T Consensus 14 ~s~I~qV~DLfPd-LG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 14 DSLISQVKDLLPD-LGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHCCS-SCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHccc-CCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4556667777765 333345566688999999999999998
No 182
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.02 E-value=16 Score=33.92 Aligned_cols=71 Identities=20% Similarity=0.387 Sum_probs=46.4
Q ss_pred CCCCCCCcccccccCceecCCcccccHHHHhhhhc---------CCCCCCCCCCCccccccccccCCCCCcccccccccc
Q 004295 651 GEQGECPICLEAFEDAVLTPCAHRLCRECLLGSWK---------TPTSGLCPVCRKTISRQDLITAPTGSRFQVDIEKNW 721 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~---------~~~~~~CP~Cr~~i~~~~l~~~~~~~~~~~~~~~~~ 721 (763)
+....|.+|.+-=+-.-=-.|-..||..|+...+. ....-.||.|+...- +
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl--------------------~ 120 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL--------------------L 120 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT--------------------H
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH--------------------H
Confidence 44579999997433222237999999999985442 334677999974211 1
Q ss_pred ccchhHHHHHHHHHHHhcCC
Q 004295 722 VESTKIAVLLKELENLCLSG 741 (763)
Q Consensus 722 ~~SsKi~aLl~~L~~l~~~~ 741 (763)
..=++..++++.|.+++.++
T Consensus 121 ~l~~~c~~~~~~~~~~~~~~ 140 (142)
T 2lbm_A 121 DLVTACNSVFENLEQLLQQN 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 22446778888888776553
No 183
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=56.47 E-value=6.3 Score=35.68 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=33.8
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
++++.+.++.+ .| .+.-.++++|..++||+++|++.+|.+..
T Consensus 77 ~~e~~v~~L~~-MG--F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITS-MG--FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHH-HT--SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHH-cC--CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 56677777776 36 44458999999999999999999999865
No 184
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=56.31 E-value=9.3 Score=28.75 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCChHHHHHHhccC
Q 004295 24 MDIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 24 ~~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
..|-+.|..|+||+++|||+.+..
T Consensus 21 ~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 21 SKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 466777899999999999999876
No 185
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=53.90 E-value=11 Score=26.36 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCccceeeeecCccceeEEeecccCcccccCCc
Q 004295 362 LHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (763)
Q Consensus 362 ~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~ 394 (763)
..+.|.++.-++++ .+|+|..|++.+=+.|.
T Consensus 4 ~~~~W~e~~~~~G~--~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 4 AVSEWTEYKTADGK--TYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SSCSCEEEECTTSC--EEEEETTTTEEESSCCS
T ss_pred CCCCeEEEECCCCC--EEEEECCCCCEEecCCC
Confidence 34579999877744 79999999999999886
No 186
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=53.59 E-value=7.7 Score=41.50 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=46.7
Q ss_pred CCCCcccccccCcee-cCCcccccHHHH--hhhhcCCCCCCCCCCCcccccccccc----------CCCCCccccccccc
Q 004295 654 GECPICLEAFEDAVL-TPCAHRLCRECL--LGSWKTPTSGLCPVCRKTISRQDLIT----------APTGSRFQVDIEKN 720 (763)
Q Consensus 654 ~eC~IC~~~~~~~~i-t~C~H~fC~~Ci--~~~~~~~~~~~CP~Cr~~i~~~~l~~----------~~~~~~~~~~~~~~ 720 (763)
..||+-...|..|+- ..|.|.-|.+-. .........-.||.|...+...+|.- .+.-..+.++..+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~~~v~~I~v~~DGs 295 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDCSDVDEIKFQEDGS 295 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTCSSCCEEEECC-CC
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhCCCCCEEEECCCCc
Confidence 689999999999885 569999776643 23333345778999999988776641 22223445555566
Q ss_pred ccc
Q 004295 721 WVE 723 (763)
Q Consensus 721 ~~~ 723 (763)
|.+
T Consensus 296 W~p 298 (360)
T 4fo9_A 296 WCP 298 (360)
T ss_dssp EEC
T ss_pred eec
Confidence 653
No 187
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=52.66 E-value=12 Score=34.67 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 722 VESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 722 ~~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
..+.|+.+|.++|... .+.|+|||.++....+.+...|.
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~ 56 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELD 56 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHH
Confidence 3578999999999874 46799999999999999887764
No 188
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=51.17 E-value=12 Score=29.75 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=33.5
Q ss_pred cccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhc
Q 004295 4 KVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIF 45 (763)
Q Consensus 4 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~ 45 (763)
.++.+.+..++.--| ++-|++-.+|..++||++.||...=
T Consensus 7 ~it~~~Vk~LRe~TG--ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 7 GSSKELLMKLRRKTG--YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCCCHHHHHHHHHHC--CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457788888988888 4557999999999999999997664
No 189
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=49.28 E-value=16 Score=26.12 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCccceeeeecCccceeEEeecccCcccccCCc
Q 004295 362 LHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (763)
Q Consensus 362 ~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~ 394 (763)
..+.|.++.-++++ .+|+|..|++.+=+.|.
T Consensus 8 ~~~~W~e~~~~~G~--~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 8 TEEIWVENKTPDGK--VYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCSEEEEECTTSC--EEEEETTTCCEESSCCS
T ss_pred CCCCCEEEECCCCC--EEEEECCCCCEEeCCCC
Confidence 44679998865544 79999999999988885
No 190
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.14 E-value=17 Score=30.71 Aligned_cols=50 Identities=22% Similarity=0.561 Sum_probs=35.3
Q ss_pred CCCCCCCccccccc----Ccee---cCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 651 GEQGECPICLEAFE----DAVL---TPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 651 ~~~~eC~IC~~~~~----~~~i---t~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
.....|.||.+.+. ..++ -.|+-..|+.|.+--.+ .....||.|.+...+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 34479999999642 2222 35788899999875443 346789999998764
No 191
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.76 E-value=12 Score=30.15 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=28.3
Q ss_pred HHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 7 DEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
++.+++|.+.-.+.... .|...|..++||+++||+..+.
T Consensus 19 ~~~v~~L~~MFP~lD~~-vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYD-IIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHH-HHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHH-HHHHHHHHcCCCHHHHHHHHHh
Confidence 45566777776765542 3445559999999999999886
No 192
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=47.79 E-value=12 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=37.7
Q ss_pred CccccHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhcc
Q 004295 2 GTKVTDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFD 46 (763)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d 46 (763)
|.-.+.+-.+.+..++.=.++.-.++++|+..|||+++|+|-.|-
T Consensus 1 ~~~l~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 1 GSHMSPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp -CCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 445667777888888887888878999999999999999999986
No 193
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=46.79 E-value=8.1 Score=39.82 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=36.0
Q ss_pred cHHHHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCCC
Q 004295 6 TDEVLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTPN 49 (763)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~~ 49 (763)
.++.+++|.+|-|.... ..++.|..++-|++.|++.||+.+.
T Consensus 15 ~~~~i~qF~~iTg~~~~--~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 15 EQEAIESFTSLTKCDPK--VSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHHCCCHH--HHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHH--HHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 56789999999997554 6888899999999999999998654
No 194
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=45.97 E-value=30 Score=39.93 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=40.9
Q ss_pred CCCccCCCCchHHHHhHHHHHhcccCCCcccccccCCccceeeeecCccceeEEeecccCcccccCCcccccccCceeec
Q 004295 327 PPSTLKCELRPYQKQALHWMVQLEKGRCLDEAATTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPSTLQMARGGILAD 406 (763)
Q Consensus 327 ~p~~l~~~LrpYQkqgl~WMl~rE~~~~~~~~~~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~~~~~~GGILAD 406 (763)
+...+...|=+.|++||...+.... =.|+.=
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~~~~-------------------------------------------------~~lI~G 212 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALSQKE-------------------------------------------------LAIIHG 212 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHHCSS-------------------------------------------------EEEEEC
T ss_pred cccccCCCCCHHHHHHHHHHhcCCC-------------------------------------------------ceEEEC
Confidence 3345567899999999999885311 024444
Q ss_pred CCCCchHHHHHHHHHhcccCC-CCcccccC
Q 004295 407 AMGLGKTVMTIALLLTHSQRG-GLSGIQSA 435 (763)
Q Consensus 407 EMGLGKTIq~LaLI~~~~~~~-~~l~v~p~ 435 (763)
-.|-|||-+++.+|......+ .+++++|+
T Consensus 213 PPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 589999999888876554433 46666665
No 195
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=45.38 E-value=13 Score=35.74 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHhcCCCeEEEecCchhHHHHhhhhcc
Q 004295 723 ESTKIAVLLKELENLCLSGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 723 ~SsKi~aLl~~L~~l~~~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.+.|+.+|+++|.. .+.|+|||.++....+.+...|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~ 75 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLL 75 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHH
Confidence 57899999988875 36799999999999999987774
No 196
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=44.88 E-value=13 Score=26.63 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCccceeeeecCccceeEEeecccCcccccCCc
Q 004295 362 LHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (763)
Q Consensus 362 ~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~ 394 (763)
..+.|.++.-+++ ..+|+|..|++.+=+.|.
T Consensus 10 ~~~~W~e~~~~~G--~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 10 AKSMWTEHKSPDG--RTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp --CCEEEEEETTT--EEEEEETTTTEEEESCC-
T ss_pred CCCCcEEEECCCC--CEEEEECCCCCEEeCCCC
Confidence 3457999886654 479999999998888874
No 197
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=43.67 E-value=13 Score=31.74 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=34.0
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|-.|--... -.|.-.-|.+|..|+...+.. ...||.|..++-..
T Consensus 29 ~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV--SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS--SSEETTTTEECCCC
T ss_pred ccChhhccccC-CeeeecchhhHHHHHHHHHhh--ccCCcccCCcCCcc
Confidence 56777765444 334445899999999877654 68999999987654
No 198
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.08 E-value=18 Score=28.34 Aligned_cols=40 Identities=23% Similarity=0.554 Sum_probs=29.5
Q ss_pred CCCCcccccccCce---ecCCcccccHHHHhhhhcCCCCCCCCCC
Q 004295 654 GECPICLEAFEDAV---LTPCAHRLCRECLLGSWKTPTSGLCPVC 695 (763)
Q Consensus 654 ~eC~IC~~~~~~~~---it~C~H~fC~~Ci~~~~~~~~~~~CP~C 695 (763)
..|--|..++.+.. =..|.+.||.+|= .+-+..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD--~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD--VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH--HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh--HHHHhhccCCcCC
Confidence 45889988775544 2569999999994 3445567789988
No 199
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=40.40 E-value=14 Score=24.03 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=17.8
Q ss_pred cceeeeecCccceeEEeecccCcccccCC
Q 004295 365 CWEAYRLLDERELVVYLNAFSGEATIEFP 393 (763)
Q Consensus 365 lW~~~~~~~~~~~~~Y~N~~sg~~s~~~P 393 (763)
-|+ +.- ..+..+|+|..|++-+-+.|
T Consensus 2 gWe-~~~--~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIH--ENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEE--SSSSEEEEETTTTEEESSCC
T ss_pred CCe-EEC--CCCCeEEEECCCCCEeccCC
Confidence 377 333 33447899999998776655
No 200
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.64 E-value=3.5 Score=35.43 Aligned_cols=41 Identities=27% Similarity=0.605 Sum_probs=30.0
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..||.|..+++-. =++..|..|-.++.. .+.||.|.+++..
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~---~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEFIEM---KALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCEEEE---EEECTTTCSBCEE
T ss_pred ccCccCCCcceec----CCEEECccccchhhc---cccCcchhhHHHH
Confidence 7899999877631 235568888766543 6889999998764
No 201
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=38.89 E-value=31 Score=35.60 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=21.7
Q ss_pred CceeecCCCCchHHHHH-HHHHhcccC---CCCcccccC
Q 004295 401 GGILADAMGLGKTVMTI-ALLLTHSQR---GGLSGIQSA 435 (763)
Q Consensus 401 GGILADEMGLGKTIq~L-aLI~~~~~~---~~~l~v~p~ 435 (763)
..|++-.-|-|||+..+ .++...... ...++++|.
T Consensus 133 ~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred eEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 46777789999999865 434332221 135666665
No 202
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=36.79 E-value=26 Score=32.34 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCCCceEEEEeeeecEEeeccCCC--CCCCCEEEEEee
Q 004295 90 SEGSEWWFVGWGDVPAMSTSKGRK--LRRGDEVTFTFP 125 (763)
Q Consensus 90 ~~~~~~~~ig~~~v~~~~t~~g~~--l~~g~~v~~~r~ 125 (763)
.+-..|..||..-+.-|-.....+ |++||.|+|..-
T Consensus 91 ~sPGGWqliGrTp~~lfd~~~~~p~ll~~GD~VrF~~i 128 (141)
T 2zp2_A 91 STPGGWQLIGKTPLALFRPQENPPTLLRAGDIVKFVRI 128 (141)
T ss_dssp CCCCCCEEEEECSCC---------CCSCTTCEEEEEEC
T ss_pred CCCCcceEecccChhhhCCCCCCCcccCCCCEEEEEEC
Confidence 345579999999999998887766 899999999864
No 203
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=33.90 E-value=30 Score=39.91 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=34.5
Q ss_pred cchhHHHHHHHHHHHhc--CCCeEEEecCchhHHHHhhhhcc
Q 004295 723 ESTKIAVLLKELENLCL--SGSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 723 ~SsKi~aLl~~L~~l~~--~~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.+.|+..|+++|.+... .+.++|||++++...+.|...|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~ 419 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE 419 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHH
Confidence 57899999999998643 37899999999999999988774
No 204
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=31.75 E-value=39 Score=23.18 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCccceeeeecCccceeEEeecccCcccccCCcc
Q 004295 362 LHPCWEAYRLLDERELVVYLNAFSGEATIEFPST 395 (763)
Q Consensus 362 ~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~ 395 (763)
+-+-|++..-++ +..||+|..|++.+-+.|..
T Consensus 4 LP~gW~~~~~~~--G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 4 LPPGWDEYKTHN--GKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp SCTTEEEEECSS--CCEEEEETTTTEEESSCTTT
T ss_pred CCCCcEEEECCC--CCEEEEECCCCCeeeeCcCC
Confidence 456798875443 44799999999999888864
No 205
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=31.20 E-value=30 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=31.8
Q ss_pred ccHHHHhhhhcccCCCCChHHHHHHHHhCCC-ChHHHHHHhccC
Q 004295 5 VTDEVLSTVRSVVGPEFSNMDIIRALHMANH-DPAAAINIIFDT 47 (763)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ain~~~d~ 47 (763)
|+++.+.++.+ .|= +.-.+.++|+.++| |++.|+|-+|..
T Consensus 2 ~d~~~l~~L~~-MGF--~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 2 IDESSVMQLAE-MGF--PLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp CCTHHHHHHHT-TSS--CCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred CCHHHHHHHHH-cCC--CHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 56677777766 664 44489999988977 999999999987
No 206
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.85 E-value=63 Score=26.28 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHhhhhcccCCCCChHHHHHHHHhCCCChHHHHHHhccCC
Q 004295 9 VLSTVRSVVGPEFSNMDIIRALHMANHDPAAAINIIFDTP 48 (763)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ain~~~d~~ 48 (763)
+...++.|-|-.... -.-.+|.+++||++.||.+.=+.+
T Consensus 27 lLnQLrEITGiqD~~-~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQ-ILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHH-HHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHH-HHHHHHHhccCCHHHHHHHHhccc
Confidence 677889999965553 244667899999999999887763
No 207
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=30.59 E-value=29 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=28.0
Q ss_pred CCceEEEEeeeecEEeeccCCC--CCCCCEEEEE
Q 004295 92 GSEWWFVGWGDVPAMSTSKGRK--LRRGDEVTFT 123 (763)
Q Consensus 92 ~~~~~~ig~~~v~~~~t~~g~~--l~~g~~v~~~ 123 (763)
-..|..||.+-+.-|-.....+ |++||.|+|.
T Consensus 192 PGGWqlIGrTp~~lfd~~~~~P~Ll~pGD~VrF~ 225 (228)
T 3mml_B 192 PGGWQLIGHTDAVMFDVNRDKPALLTPGMWVQFR 225 (228)
T ss_dssp EECSEEEEEECSCSBCTTSSSSBSCCTTCEEEEE
T ss_pred CCcceEeeeccccccCCCCCCCcccCCCCEEEEE
Confidence 3479999999999999887776 7999999996
No 208
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.23 E-value=45 Score=31.29 Aligned_cols=47 Identities=13% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 653 QGECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
-..|..|..++....+..=+..+|..|....+ .++|..|+.+|...+
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPPTQ 79 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHH----SCBCTTTCCBCCTTS
T ss_pred cCccCCCCCcCCCCCcccCCeeeecccccccc----cccccccccccCCCc
Confidence 36777777777665555667888988887654 467888888887654
No 209
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=29.21 E-value=47 Score=32.58 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=14.0
Q ss_pred CCCchHHHHhHHHHHhc
Q 004295 333 CELRPYQKQALHWMVQL 349 (763)
Q Consensus 333 ~~LrpYQkqgl~WMl~r 349 (763)
..+++||.+++..+...
T Consensus 60 ~p~~~~q~~~i~~i~~g 76 (235)
T 3llm_A 60 LPVKKFESEILEAISQN 76 (235)
T ss_dssp SGGGGGHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHhcC
Confidence 46899999999998753
No 210
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.36 E-value=35 Score=30.23 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=35.2
Q ss_pred CCCCccccccc---CceecCCcccccHHHHhhhhcCCCCCCCCCCCccccccccc
Q 004295 654 GECPICLEAFE---DAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLI 705 (763)
Q Consensus 654 ~eC~IC~~~~~---~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~ 705 (763)
..|..|..++. ...+..=+..+|..|....+.. ..+|..|..+|...++.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC--CCSSSCSSCCSCCEESS
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC--CCccccCCCCcCchheE
Confidence 46778877775 2344556778888888776531 34899999999976654
No 211
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=28.35 E-value=32 Score=34.29 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=29.6
Q ss_pred CCceEEEEeeeecEEeeccCCC--CCCCCEEEEEee
Q 004295 92 GSEWWFVGWGDVPAMSTSKGRK--LRRGDEVTFTFP 125 (763)
Q Consensus 92 ~~~~~~ig~~~v~~~~t~~g~~--l~~g~~v~~~r~ 125 (763)
-..|..||.+-+.-|-.....+ |++||.|+|..-
T Consensus 176 PGGWqlIGrTp~~lfd~~~~~P~Ll~~GD~VrF~~i 211 (225)
T 2phc_B 176 PGGWRIIGRIPLRTFNPGKVPPSIVLPGDYVKFVPI 211 (225)
T ss_dssp EECSEEEEECCSCCBCTTSSSSBSSCTTCEEEEEEE
T ss_pred CCcceEecccchhhhCCCCCCCcccCCCCEEEEEEC
Confidence 4579999999999998888776 899999999864
No 212
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=27.49 E-value=56 Score=22.89 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=25.0
Q ss_pred ccCCccceeeeecCccceeEEeecccCcccccCCc
Q 004295 360 TTLHPCWEAYRLLDERELVVYLNAFSGEATIEFPS 394 (763)
Q Consensus 360 ~~~~plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~ 394 (763)
..+-+-|++..-++ +..||+|..|++-+-+.|.
T Consensus 6 ~~LP~gW~~~~d~~--Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 6 SGLPPGWQSYLSPQ--GRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp SSCCTTCEEEECTT--SCEEEECSSSCCEESSSCC
T ss_pred CCCCCCceEEECCC--CCEEEEECCCCCEeCCCCC
Confidence 34566798876554 4479999999998888885
No 213
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=27.07 E-value=45 Score=31.71 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.3
Q ss_pred CCCCCCCCcccccccc
Q 004295 689 SGLCPVCRKTISRQDL 704 (763)
Q Consensus 689 ~~~CP~Cr~~i~~~~l 704 (763)
.++|..|+.+|...+.
T Consensus 119 ~~kC~~C~~~I~~~~~ 134 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQV 134 (182)
T ss_dssp SCCCTTTCCCCCSSCC
T ss_pred ccccccCCCccCCCce
Confidence 5789999998876543
No 214
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.50 E-value=25 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCChHHHHHHhccC
Q 004295 25 DIIRALHMANHDPAAAINIIFDT 47 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~ain~~~d~ 47 (763)
.-+++|...++|+++||...+..
T Consensus 26 ~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 26 LNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhc
Confidence 46788899999999999999875
No 215
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=26.05 E-value=32 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=24.8
Q ss_pred ccceeeeecCccceeEEeecccCcccccCCcc
Q 004295 364 PCWEAYRLLDERELVVYLNAFSGEATIEFPST 395 (763)
Q Consensus 364 plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~ 395 (763)
..|.++.-++++ .+|+|..|++-+=+.|..
T Consensus 7 ~~W~e~~s~~G~--~YYyN~~T~eS~WekP~~ 36 (50)
T 2dk1_A 7 GRWVEGITSEGY--HYYYDLISGASQWEKPEG 36 (50)
T ss_dssp CCEEECCCSTTC--CCEEESSSCCEESSCCTT
T ss_pred CCeEEEECCCCC--EEEEECCCCCEEeeCChh
Confidence 469998877644 699999999999999964
No 216
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=24.72 E-value=28 Score=41.25 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=19.7
Q ss_pred ccHHHHhhhhc------CCCCCCCCCCCcccc
Q 004295 675 LCRECLLGSWK------TPTSGLCPVCRKTIS 700 (763)
Q Consensus 675 fC~~Ci~~~~~------~~~~~~CP~Cr~~i~ 700 (763)
.|.+|-.+|-. |.+...||.|+=.+.
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l~ 189 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSYR 189 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCEE
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceEE
Confidence 49999999974 234678999987643
No 217
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.32 E-value=56 Score=35.20 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCCCCCCcccccccCcee--cCCcccccHHHHhhhhcC--------CCCCCCCCCCcc
Q 004295 651 GEQGECPICLEAFEDAVL--TPCAHRLCRECLLGSWKT--------PTSGLCPVCRKT 698 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~i--t~C~H~fC~~Ci~~~~~~--------~~~~~CP~Cr~~ 698 (763)
+....|.+|.+.-+-..= ..|...||.+||...+.. ...=.|..|.-.
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 455789999985421111 279999999999876632 245679999753
No 218
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=24.22 E-value=58 Score=40.25 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=22.3
Q ss_pred ceeecCCCCchHHHHHHHHHhcc-cCCCCcccccC
Q 004295 402 GILADAMGLGKTVMTIALLLTHS-QRGGLSGIQSA 435 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~-~~~~~l~v~p~ 435 (763)
.|+.=.-|-|||+..+..++... .....++++|.
T Consensus 96 vlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~Pt 130 (1104)
T 4ddu_A 96 FTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPT 130 (1104)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEech
Confidence 57777899999996655544432 22346777776
No 219
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.10 E-value=49 Score=26.92 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.1
Q ss_pred ccceeeeecCccceeEEeecccCcccccCCcc
Q 004295 364 PCWEAYRLLDERELVVYLNAFSGEATIEFPST 395 (763)
Q Consensus 364 plW~~~~~~~~~~~~~Y~N~~sg~~s~~~P~~ 395 (763)
..|.+...+|++ .||+|+.|.+..=++|..
T Consensus 20 t~W~~v~T~dGR--~fyyN~~Tk~S~WekP~e 49 (73)
T 2dk7_A 20 TPWCVVWTGDER--VFFYNPTTRLSMWDRPDD 49 (73)
T ss_dssp SSCEEEEESSSC--EEEEETTTTEECSSCCTT
T ss_pred CCcEEEECCCCC--EEEecCcccceeccCChH
Confidence 369998888887 699999999999999975
No 220
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=23.95 E-value=20 Score=41.54 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHHHhcC---CCeEEEecCchhHHHHhhhhcc
Q 004295 723 ESTKIAVLLKELENLCLS---GSKSILFSQWTAFLDLLQIPLS 762 (763)
Q Consensus 723 ~SsKi~aLl~~L~~l~~~---~~KvVVFSQfts~LDlIe~~L~ 762 (763)
.+.|+..|++.|.+.... +.|+|||+++..+.+.|...|+
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~ 421 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWIT 421 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHH
Confidence 478888999998874432 7899999999999999988775
No 221
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.68 E-value=20 Score=37.56 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=34.4
Q ss_pred CCCCCcccccccCceec------CCcccccHHHHhhhhcCCCCCCCCCCCccccccccccCC
Q 004295 653 QGECPICLEAFEDAVLT------PCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQDLITAP 708 (763)
Q Consensus 653 ~~eC~IC~~~~~~~~it------~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~l~~~~ 708 (763)
...||+|.....-.++. .-.+..|.-|-.++- -...+||.|... ..-..+.+.
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~--~~R~~C~~Cg~~-~~l~y~~~e 240 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH--YVRIKCSHCEES-KHLAYLSLE 240 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE--CCTTSCSSSCCC-SCCEEECCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe--ecCcCCcCCCCC-CCeeEEEec
Confidence 47999999855444443 224788999976652 236799999986 333444443
No 222
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.64 E-value=56 Score=28.80 Aligned_cols=45 Identities=16% Similarity=0.407 Sum_probs=33.0
Q ss_pred CCCCcccccccCc-eecCCcccccHHHHhhhhcCCCCCCCCCCCcccccc
Q 004295 654 GECPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQ 702 (763)
Q Consensus 654 ~eC~IC~~~~~~~-~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~ 702 (763)
..|..|..++... ....=+..+|+.|..... .++|..|+.+|...
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDPE 76 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCTT
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCCcC
Confidence 6777787777653 334567888988876643 57899999999864
No 223
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=21.71 E-value=64 Score=36.28 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=21.9
Q ss_pred ceeecCCCCchHHHHHHHHHhcccCCCCcccccCC
Q 004295 402 GILADAMGLGKTVMTIALLLTHSQRGGLSGIQSAS 436 (763)
Q Consensus 402 GILADEMGLGKTIq~LaLI~~~~~~~~~l~v~p~s 436 (763)
.|+-=-.|-|||+..|.-++.. ....++++|+.
T Consensus 25 ~~~~a~TGtGKT~~~l~p~l~~--~~~v~i~~pt~ 57 (551)
T 3crv_A 25 VALNAPTGSGKTLFSLLVSLEV--KPKVLFVVRTH 57 (551)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH--CSEEEEEESSG
T ss_pred EEEECCCCccHHHHHHHHHHhC--CCeEEEEcCCH
Confidence 4555568999999987666552 33456666663
No 224
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.61 E-value=29 Score=32.71 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=31.5
Q ss_pred CCCCCCCcccccccCce--ecCCcccccHHHHhhhhcC--------CCCCCCCCCCc
Q 004295 651 GEQGECPICLEAFEDAV--LTPCAHRLCRECLLGSWKT--------PTSGLCPVCRK 697 (763)
Q Consensus 651 ~~~~eC~IC~~~~~~~~--it~C~H~fC~~Ci~~~~~~--------~~~~~CP~Cr~ 697 (763)
|....|.||.+--+-.. -..|-..||.+||...+.. ...=.|..|.-
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 45579999997431111 1368999999999876543 23456888874
No 225
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.12 E-value=31 Score=31.08 Aligned_cols=32 Identities=28% Similarity=0.626 Sum_probs=23.1
Q ss_pred CCCCCCcccccccCcee----cCCcccccHHHHhhh
Q 004295 652 EQGECPICLEAFEDAVL----TPCAHRLCRECLLGS 683 (763)
Q Consensus 652 ~~~eC~IC~~~~~~~~i----t~C~H~fC~~Ci~~~ 683 (763)
+...|.+|...+.-..- -.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34689999997763221 249999999997543
No 226
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.64 E-value=15 Score=30.60 Aligned_cols=41 Identities=29% Similarity=0.652 Sum_probs=24.4
Q ss_pred CCCCcccccccCceecCCcccccHHHHhhhhcCCCCCCCCCCCccccc
Q 004295 654 GECPICLEAFEDAVLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISR 701 (763)
Q Consensus 654 ~eC~IC~~~~~~~~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~ 701 (763)
..||.|..++..-. ++..|..|-.++-. .+.||.|++++..
T Consensus 3 ~~CP~C~~~l~~~~----~~~~C~~C~~~~~~---~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNG----DTAHCETCAKDFSL---QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECS----SEEECTTTCCEEEE---EEECSSSCSCCCE
T ss_pred CCCCCCCCccccCC----CceECccccccCCC---cccCcchhhHHHH
Confidence 57999987665321 24457677554432 3467777776653
No 227
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.61 E-value=73 Score=26.72 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=31.1
Q ss_pred CCCCcccccccCc-eecCCcccccHHHHhhhhcCCCCCCCCCCCccccccc
Q 004295 654 GECPICLEAFEDA-VLTPCAHRLCRECLLGSWKTPTSGLCPVCRKTISRQD 703 (763)
Q Consensus 654 ~eC~IC~~~~~~~-~it~C~H~fC~~Ci~~~~~~~~~~~CP~Cr~~i~~~~ 703 (763)
..|..|..++... ....=+..+|+.|.... ..++|..|..+|...+
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~----~~~~C~~C~~~I~~~~ 80 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRE----DSPKCKGCFKAIVAGD 80 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTC----CCCBCSSSCCBCCSSS
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhh----cCCccccCCCccccCC
Confidence 5677777766543 23445677888886543 3689999999998543
No 228
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.39 E-value=36 Score=40.19 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=19.3
Q ss_pred ccHHHHhhhhcC------CCCCCCCCCCccc
Q 004295 675 LCRECLLGSWKT------PTSGLCPVCRKTI 699 (763)
Q Consensus 675 fC~~Ci~~~~~~------~~~~~CP~Cr~~i 699 (763)
.|.+|..+|-.- .+...||.|+=.+
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l 193 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPSL 193 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCee
Confidence 599999998652 3467799998765
Done!