Query 004296
Match_columns 763
No_of_seqs 411 out of 3092
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 20:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103 Molecular chaperones H 100.0 4E-128 9E-133 1032.2 61.7 724 1-760 1-727 (727)
2 KOG0100 Molecular chaperones G 100.0 6E-124 1E-128 934.9 57.2 602 2-675 37-644 (663)
3 KOG0104 Molecular chaperones G 100.0 9E-108 2E-112 875.1 64.0 747 2-758 23-834 (902)
4 PTZ00009 heat shock 70 kDa pro 100.0 3E-103 6E-108 907.0 73.4 602 1-674 4-614 (653)
5 PRK13410 molecular chaperone D 100.0 1E-102 2E-107 897.6 70.7 610 1-690 1-621 (668)
6 PTZ00400 DnaK-type molecular c 100.0 3E-100 7E-105 880.1 71.5 586 2-672 42-636 (663)
7 PRK13411 molecular chaperone D 100.0 6E-100 1E-104 878.0 73.4 592 1-674 1-601 (653)
8 PRK00290 dnaK molecular chaper 100.0 1.5E-98 3E-103 868.4 74.3 587 1-674 1-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 8.5E-99 2E-103 868.6 70.8 589 2-673 40-635 (673)
10 CHL00094 dnaK heat shock prote 100.0 1.6E-97 4E-102 856.6 72.4 590 2-674 3-599 (621)
11 PTZ00186 heat shock 70 kDa pre 100.0 2.3E-97 5E-102 848.9 72.2 588 2-672 28-623 (657)
12 TIGR02350 prok_dnaK chaperone 100.0 7.7E-97 2E-101 852.0 73.2 586 2-672 1-593 (595)
13 TIGR01991 HscA Fe-S protein as 100.0 4.9E-94 1.1E-98 822.2 72.4 579 3-671 1-582 (599)
14 KOG0101 Molecular chaperones H 100.0 3.2E-96 7E-101 798.2 50.4 602 1-675 7-615 (620)
15 PRK05183 hscA chaperone protei 100.0 1.4E-92 3E-97 811.6 70.4 578 2-672 20-599 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 1.4E-93 3.1E-98 834.1 63.0 595 3-674 1-602 (602)
17 KOG0102 Molecular chaperones m 100.0 1.5E-89 3.3E-94 713.3 44.7 590 2-673 28-626 (640)
18 PRK01433 hscA chaperone protei 100.0 8.7E-87 1.9E-91 756.2 68.6 552 2-672 20-578 (595)
19 COG0443 DnaK Molecular chapero 100.0 1.2E-85 2.6E-90 742.2 57.6 569 2-674 6-578 (579)
20 PRK11678 putative chaperone; P 100.0 2.4E-55 5.2E-60 482.3 36.9 337 3-380 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.2E-38 2.7E-43 342.9 33.2 307 4-380 6-324 (336)
22 PRK13929 rod-share determining 100.0 5.6E-38 1.2E-42 336.6 31.5 305 3-377 6-324 (335)
23 PRK13927 rod shape-determining 100.0 2E-35 4.4E-40 318.5 29.7 305 3-379 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 2E-34 4.4E-39 310.1 33.6 305 4-379 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1E-33 2.2E-38 305.8 33.4 308 3-380 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.4E-31 3.1E-36 279.6 21.0 306 3-378 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 6.3E-29 1.4E-33 248.2 27.5 309 3-381 8-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.2E-28 2.6E-33 250.4 22.1 200 115-375 39-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 1.3E-26 2.8E-31 239.8 27.6 202 115-377 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.6E-22 3.4E-27 221.0 25.4 194 151-376 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 2.5E-21 5.5E-26 213.8 29.4 196 153-379 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 9.7E-18 2.1E-22 179.9 26.0 197 153-380 167-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 3.3E-15 7.1E-20 163.7 19.6 301 3-379 1-347 (371)
34 COG4820 EutJ Ethanolamine util 99.6 7.5E-16 1.6E-20 142.8 8.4 196 120-376 76-271 (277)
35 smart00268 ACTIN Actin. ACTIN 99.6 2.2E-14 4.7E-19 157.5 17.7 300 2-379 2-347 (373)
36 PRK13917 plasmid segregation p 99.6 2E-13 4.3E-18 146.6 24.1 209 140-382 115-339 (344)
37 PTZ00280 Actin-related protein 99.4 2.3E-11 4.9E-16 134.9 24.8 206 138-356 103-337 (414)
38 TIGR01175 pilM type IV pilus a 99.4 9.9E-11 2.1E-15 127.3 23.4 165 150-359 142-310 (348)
39 PF11104 PilM_2: Type IV pilus 99.3 6.5E-11 1.4E-15 127.8 18.4 182 151-377 136-339 (340)
40 PF00022 Actin: Actin; InterP 99.3 2.3E-11 4.9E-16 134.7 15.2 309 2-380 5-368 (393)
41 PTZ00281 actin; Provisional 99.3 1.4E-10 3E-15 126.9 18.5 218 137-379 101-350 (376)
42 PTZ00452 actin; Provisional 99.3 3.4E-10 7.4E-15 123.4 20.2 215 137-379 100-349 (375)
43 TIGR03739 PRTRC_D PRTRC system 99.2 6.9E-10 1.5E-14 118.7 21.2 208 136-377 101-318 (320)
44 PTZ00004 actin-2; Provisional 99.2 6.3E-10 1.4E-14 121.9 19.2 214 137-378 101-351 (378)
45 PTZ00466 actin-like protein; P 99.2 1.4E-09 3.1E-14 118.6 20.5 217 137-378 106-353 (380)
46 COG4972 PilM Tfp pilus assembl 99.1 1.2E-07 2.6E-12 96.3 26.1 177 153-373 151-328 (354)
47 PF06406 StbA: StbA protein; 99.0 5.9E-09 1.3E-13 111.2 13.5 172 166-374 141-316 (318)
48 TIGR00241 CoA_E_activ CoA-subs 98.9 2.5E-08 5.5E-13 102.6 17.2 170 169-376 73-248 (248)
49 KOG0679 Actin-related protein 98.9 2.8E-07 6.1E-12 94.9 20.4 116 116-245 86-202 (426)
50 PRK10719 eutA reactivating fac 98.8 5.2E-08 1.1E-12 104.9 12.2 159 138-344 89-268 (475)
51 COG5277 Actin and related prot 98.6 8.9E-07 1.9E-11 97.4 17.2 98 137-245 106-204 (444)
52 PF07520 SrfB: Virulence facto 98.6 7.7E-06 1.7E-10 95.4 24.5 267 110-381 415-836 (1002)
53 TIGR03192 benz_CoA_bzdQ benzoy 98.6 1.4E-05 3.1E-10 82.1 23.5 47 333-379 241-288 (293)
54 TIGR03286 methan_mark_15 putat 98.5 2.8E-05 6E-10 83.1 22.1 46 333-378 357-402 (404)
55 COG1924 Activator of 2-hydroxy 98.4 3.8E-05 8.2E-10 80.0 20.4 180 168-379 210-390 (396)
56 PRK10331 L-fuculokinase; Provi 98.2 0.0001 2.3E-09 83.4 20.9 83 297-383 357-440 (470)
57 TIGR02261 benz_CoA_red_D benzo 98.2 0.00045 9.9E-09 70.2 22.0 177 170-377 80-262 (262)
58 TIGR02628 fuculo_kin_coli L-fu 98.1 0.00014 3E-09 82.3 18.3 84 297-383 361-444 (465)
59 COG1070 XylB Sugar (pentulose 98.1 0.00016 3.4E-09 82.5 18.5 81 297-381 369-450 (502)
60 PRK13317 pantothenate kinase; 98.0 0.00095 2.1E-08 69.3 22.0 48 331-378 222-273 (277)
61 PF06277 EutA: Ethanolamine ut 97.9 0.00028 6E-09 76.6 16.2 88 140-234 88-178 (473)
62 COG4457 SrfB Uncharacterized p 97.9 0.00065 1.4E-08 74.8 18.8 85 294-380 743-847 (1014)
63 TIGR01314 gntK_FGGY gluconate 97.9 0.004 8.7E-08 71.3 25.9 81 299-383 371-452 (505)
64 PF08841 DDR: Diol dehydratase 97.7 0.00031 6.6E-09 70.1 11.2 189 161-377 106-329 (332)
65 KOG0676 Actin and related prot 97.6 0.00043 9.4E-09 73.7 11.9 194 138-356 100-315 (372)
66 TIGR02259 benz_CoA_red_A benzo 97.4 0.0028 6.2E-08 67.3 13.8 178 169-377 249-432 (432)
67 KOG0797 Actin-related protein 97.3 0.0017 3.6E-08 69.9 11.4 122 110-244 195-322 (618)
68 COG4819 EutA Ethanolamine util 97.2 0.0024 5.2E-08 65.1 10.7 88 140-234 90-180 (473)
69 COG1069 AraB Ribulose kinase [ 96.9 0.069 1.5E-06 59.0 18.9 215 154-383 232-482 (544)
70 PF02782 FGGY_C: FGGY family o 96.7 0.0016 3.5E-08 64.5 4.1 48 331-379 149-196 (198)
71 KOG0677 Actin-related protein 96.6 0.075 1.6E-06 52.6 14.8 193 137-355 101-318 (389)
72 PF01869 BcrAD_BadFG: BadF/Bad 96.4 0.53 1.1E-05 49.1 21.4 70 305-377 197-271 (271)
73 PRK15027 xylulokinase; Provisi 96.4 0.0077 1.7E-07 68.6 7.7 85 297-384 355-439 (484)
74 KOG0680 Actin-related protein 96.0 0.4 8.7E-06 49.3 16.7 102 137-243 93-198 (400)
75 TIGR01315 5C_CHO_kinase FGGY-f 96.0 0.016 3.5E-07 66.8 7.8 86 297-383 409-494 (541)
76 PLN02669 xylulokinase 95.9 0.017 3.7E-07 66.6 7.5 49 330-379 444-492 (556)
77 PF14574 DUF4445: Domain of un 95.8 0.37 8E-06 52.8 16.8 60 292-352 289-348 (412)
78 PF14450 FtsA: Cell division p 95.8 0.015 3.2E-07 52.5 5.1 48 196-243 1-53 (120)
79 TIGR01234 L-ribulokinase L-rib 95.6 0.035 7.6E-07 64.1 8.4 83 297-383 404-487 (536)
80 KOG2517 Ribulose kinase and re 95.6 0.13 2.7E-06 57.3 12.0 71 309-383 395-465 (516)
81 TIGR00555 panK_eukar pantothen 95.5 0.18 3.9E-06 52.2 12.4 154 192-375 99-278 (279)
82 PRK00047 glpK glycerol kinase; 95.5 0.029 6.3E-07 64.2 7.1 52 331-383 403-454 (498)
83 KOG0100 Molecular chaperones G 95.5 0.072 1.6E-06 56.0 9.2 102 622-758 539-640 (663)
84 PLN02295 glycerol kinase 95.4 0.044 9.5E-07 62.9 8.4 52 331-383 412-463 (512)
85 TIGR01311 glycerol_kin glycero 95.3 0.029 6.2E-07 64.1 6.6 82 297-383 367-450 (493)
86 TIGR01312 XylB D-xylulose kina 95.3 0.045 9.8E-07 62.3 8.1 52 331-383 390-441 (481)
87 PRK04123 ribulokinase; Provisi 95.2 0.038 8.1E-07 64.0 7.0 59 320-382 430-489 (548)
88 TIGR02627 rhamnulo_kin rhamnul 95.2 0.063 1.4E-06 60.6 8.5 83 297-384 355-438 (454)
89 PTZ00294 glycerol kinase-like 95.1 0.047 1E-06 62.5 7.2 52 331-383 406-457 (504)
90 PRK10640 rhaB rhamnulokinase; 95.0 0.077 1.7E-06 60.1 8.7 81 299-384 345-426 (471)
91 PRK11031 guanosine pentaphosph 94.9 0.62 1.3E-05 53.1 15.6 78 153-239 94-172 (496)
92 PRK10939 autoinducer-2 (AI-2) 94.8 0.082 1.8E-06 60.8 8.3 81 299-383 379-460 (520)
93 PF01968 Hydantoinase_A: Hydan 94.8 0.033 7.1E-07 58.6 4.5 67 306-375 216-283 (290)
94 KOG2531 Sugar (pentulose and h 94.6 0.077 1.7E-06 56.9 6.6 53 326-379 437-489 (545)
95 PRK10854 exopolyphosphatase; P 94.5 0.63 1.4E-05 53.3 14.5 77 153-238 99-176 (513)
96 COG1548 Predicted transcriptio 94.5 0.22 4.7E-06 49.6 8.9 73 122-212 76-148 (330)
97 PRK05082 N-acetylmannosamine k 94.4 4.3 9.3E-05 42.7 19.7 48 331-378 233-287 (291)
98 COG0248 GppA Exopolyphosphatas 94.1 0.9 1.9E-05 51.1 14.3 57 153-212 91-147 (492)
99 KOG0681 Actin-related protein 94.0 0.43 9.4E-06 52.4 10.9 99 138-245 117-216 (645)
100 smart00842 FtsA Cell division 93.6 0.61 1.3E-05 45.6 10.5 29 151-179 157-185 (187)
101 PTZ00297 pantothenate kinase; 92.5 6.8 0.00015 50.3 19.9 73 304-377 1365-1444(1452)
102 PF02541 Ppx-GppA: Ppx/GppA ph 92.2 0.49 1.1E-05 49.8 8.1 74 156-238 77-151 (285)
103 PTZ00009 heat shock 70 kDa pro 91.4 0.78 1.7E-05 54.2 9.5 49 698-758 563-611 (653)
104 PF13941 MutL: MutL protein 91.3 1.7 3.7E-05 48.2 11.4 41 3-49 2-44 (457)
105 TIGR00744 ROK_glcA_fam ROK fam 90.8 7.6 0.00016 41.4 15.7 93 114-211 33-140 (318)
106 KOG0681 Actin-related protein 90.3 0.24 5.2E-06 54.3 3.4 67 313-379 538-614 (645)
107 PRK09604 UGMP family protein; 89.7 26 0.00057 37.6 18.6 47 331-377 254-306 (332)
108 PRK00290 dnaK molecular chaper 89.7 1.4 3E-05 51.9 9.6 45 698-757 549-593 (627)
109 PRK09557 fructokinase; Reviewe 89.6 30 0.00065 36.5 22.5 44 163-211 96-139 (301)
110 PRK09585 anmK anhydro-N-acetyl 89.6 2.1 4.6E-05 46.2 9.9 67 310-379 268-338 (365)
111 PRK13411 molecular chaperone D 89.4 1.8 3.9E-05 51.1 10.2 47 698-757 551-597 (653)
112 PF07318 DUF1464: Protein of u 88.9 5.2 0.00011 42.4 11.9 53 330-383 259-319 (343)
113 PLN02666 5-oxoprolinase 88.7 3.9 8.5E-05 51.5 12.6 76 298-376 454-531 (1275)
114 PRK09698 D-allose kinase; Prov 88.5 36 0.00078 35.9 22.8 43 163-211 104-146 (302)
115 PRK09605 bifunctional UGMP fam 88.3 36 0.00078 39.3 19.8 50 332-381 246-301 (535)
116 TIGR03706 exo_poly_only exopol 87.5 2.7 5.8E-05 44.6 9.0 75 155-238 90-164 (300)
117 TIGR02350 prok_dnaK chaperone 87.3 2.5 5.5E-05 49.5 9.6 46 698-758 547-592 (595)
118 KOG0101 Molecular chaperones H 86.8 2 4.3E-05 49.2 7.8 60 684-758 552-611 (620)
119 KOG0104 Molecular chaperones G 86.0 4.4 9.6E-05 46.7 9.9 79 668-757 649-733 (902)
120 smart00732 YqgFc Likely ribonu 85.5 0.74 1.6E-05 39.6 3.0 21 1-21 1-21 (99)
121 COG0554 GlpK Glycerol kinase [ 84.7 2.3 5E-05 46.7 6.8 83 298-384 371-454 (499)
122 COG2377 Predicted molecular ch 84.6 7.7 0.00017 41.3 10.4 166 192-380 161-344 (371)
123 PTZ00400 DnaK-type molecular c 84.3 4.6 9.9E-05 47.9 9.7 46 698-758 590-635 (663)
124 PRK14878 UGMP family protein; 83.3 68 0.0015 34.3 18.9 41 331-371 241-287 (323)
125 PF03652 UPF0081: Uncharacteri 82.8 1.3 2.9E-05 40.7 3.5 22 1-22 1-22 (135)
126 PF08735 DUF1786: Putative pyr 81.6 14 0.0003 37.6 10.4 97 134-238 111-209 (254)
127 TIGR03723 bact_gcp putative gl 81.5 78 0.0017 33.7 18.7 44 331-374 259-308 (314)
128 CHL00094 dnaK heat shock prote 81.1 7.1 0.00015 45.9 9.7 45 698-757 551-595 (621)
129 COG2192 Predicted carbamoyl tr 80.8 1.1E+02 0.0023 34.8 21.8 81 297-381 255-337 (555)
130 PRK07058 acetate kinase; Provi 80.3 8.8 0.00019 41.7 9.1 46 307-356 298-344 (396)
131 PLN02939 transferase, transfer 79.0 53 0.0011 40.1 15.7 173 572-748 237-426 (977)
132 TIGR03281 methan_mark_12 putat 78.4 9.4 0.0002 39.6 8.1 174 171-383 129-315 (326)
133 PLN02920 pantothenate kinase 1 78.0 11 0.00025 40.7 9.1 49 330-378 296-351 (398)
134 COG5026 Hexokinase [Carbohydra 78.0 13 0.00027 40.6 9.3 18 2-19 76-93 (466)
135 PF03702 UPF0075: Uncharacteri 77.2 4.9 0.00011 43.5 6.1 71 304-379 260-337 (364)
136 TIGR03722 arch_KAE1 universal 77.0 84 0.0018 33.6 15.5 41 332-372 243-289 (322)
137 PF02543 CmcH_NodU: Carbamoylt 76.8 72 0.0016 34.7 15.0 82 296-382 131-216 (360)
138 COG0533 QRI7 Metal-dependent p 76.2 19 0.00042 38.2 9.9 53 298-355 229-285 (342)
139 COG4012 Uncharacterized protei 76.2 95 0.0021 31.6 19.0 89 144-246 186-277 (342)
140 PTZ00340 O-sialoglycoprotein e 74.2 1.3E+02 0.0029 32.4 16.0 39 312-355 249-287 (345)
141 PLN03184 chloroplast Hsp70; Pr 74.1 17 0.00037 43.1 10.2 45 698-757 588-632 (673)
142 PF00370 FGGY_N: FGGY family o 73.0 3.2 7E-05 42.4 3.4 20 3-22 2-21 (245)
143 PF00012 HSP70: Hsp70 protein; 71.6 20 0.00043 42.0 10.1 69 676-758 527-599 (602)
144 PRK00109 Holliday junction res 70.7 4.2 9E-05 37.6 3.2 21 1-21 4-24 (138)
145 cd06007 R3H_DEXH_helicase R3H 70.2 13 0.00027 28.7 5.1 30 139-168 16-45 (59)
146 COG0145 HyuA N-methylhydantoin 69.9 5.5 0.00012 46.8 4.7 42 167-212 255-296 (674)
147 KOG2708 Predicted metalloprote 69.4 29 0.00063 34.3 8.6 62 309-375 237-300 (336)
148 COG0816 Predicted endonuclease 69.0 4.9 0.00011 37.1 3.2 22 1-22 2-23 (141)
149 PRK03011 butyrate kinase; Prov 66.9 16 0.00035 39.6 7.2 45 331-375 295-343 (358)
150 COG1940 NagC Transcriptional r 66.9 81 0.0018 33.4 12.7 44 163-211 106-149 (314)
151 PLN02362 hexokinase 65.9 28 0.0006 39.6 9.0 35 149-183 204-240 (509)
152 PTZ00288 glucokinase 1; Provis 65.7 35 0.00076 37.7 9.6 19 2-20 27-45 (405)
153 PRK00976 hypothetical protein; 65.4 29 0.00064 36.8 8.5 50 331-382 263-314 (326)
154 PLN02405 hexokinase 64.0 26 0.00056 39.7 8.3 55 149-210 204-260 (497)
155 TIGR00329 gcp_kae1 metallohydr 63.8 1.3E+02 0.0028 31.9 13.3 37 314-355 246-282 (305)
156 PRK13410 molecular chaperone D 63.7 44 0.00096 39.6 10.7 23 698-720 555-577 (668)
157 cd02640 R3H_NRF R3H domain of 63.7 21 0.00046 27.6 5.3 31 138-168 16-46 (60)
158 PF00349 Hexokinase_1: Hexokin 63.5 23 0.00051 35.1 7.1 55 191-247 60-118 (206)
159 TIGR00143 hypF [NiFe] hydrogen 63.4 15 0.00033 43.6 6.7 48 331-378 658-711 (711)
160 PRK05183 hscA chaperone protei 62.9 60 0.0013 38.2 11.5 45 698-757 553-597 (616)
161 PTZ00294 glycerol kinase-like 62.8 5.9 0.00013 45.4 3.2 22 1-22 1-23 (504)
162 PRK01433 hscA chaperone protei 62.8 53 0.0011 38.4 10.9 49 699-758 532-584 (595)
163 PF08317 Spc7: Spc7 kinetochor 61.9 2.3E+02 0.0049 30.4 15.9 39 648-686 205-243 (325)
164 PRK10939 autoinducer-2 (AI-2) 61.9 6.3 0.00014 45.3 3.2 20 3-22 5-24 (520)
165 PTZ00107 hexokinase; Provision 61.7 30 0.00065 38.9 8.3 40 145-184 189-230 (464)
166 PF03630 Fumble: Fumble ; Int 61.1 43 0.00093 36.0 9.0 46 331-376 287-339 (341)
167 PF14450 FtsA: Cell division p 60.9 12 0.00025 33.6 4.1 20 3-22 1-20 (120)
168 TIGR01991 HscA Fe-S protein as 60.7 72 0.0016 37.4 11.6 45 698-757 537-581 (599)
169 PRK02224 chromosome segregatio 60.7 2E+02 0.0044 35.5 16.2 71 571-642 145-215 (880)
170 PRK00039 ruvC Holliday junctio 60.6 7.4 0.00016 37.1 2.8 19 1-19 2-20 (164)
171 cd00529 RuvC_resolvase Hollida 59.9 65 0.0014 30.3 9.1 142 195-373 1-148 (154)
172 PF11593 Med3: Mediator comple 59.0 33 0.00071 36.5 7.3 50 634-685 9-58 (379)
173 PF10168 Nup88: Nuclear pore c 58.8 2.1E+02 0.0045 34.3 14.9 11 140-150 108-118 (717)
174 TIGR03123 one_C_unchar_1 proba 58.6 6.8 0.00015 41.5 2.4 19 194-212 128-146 (318)
175 PRK04778 septation ring format 58.0 3.6E+02 0.0078 31.4 17.2 164 574-755 118-294 (569)
176 COG2441 Predicted butyrate kin 57.2 87 0.0019 32.1 9.6 48 194-244 163-214 (374)
177 TIGR00634 recN DNA repair prot 55.9 3.8E+02 0.0083 31.1 17.9 18 628-645 224-241 (563)
178 PRK15027 xylulokinase; Provisi 55.9 8.7 0.00019 43.8 2.9 20 3-22 2-21 (484)
179 PF11172 DUF2959: Protein of u 53.8 1.9E+02 0.0041 28.3 11.0 56 625-685 38-93 (201)
180 PLN02295 glycerol kinase 53.7 10 0.00022 43.6 3.0 20 3-22 2-21 (512)
181 KOG0678 Actin-related protein 53.4 1.1E+02 0.0025 32.1 9.9 100 139-243 108-208 (415)
182 COG4296 Uncharacterized protei 52.9 37 0.00079 30.5 5.5 23 637-659 90-112 (156)
183 TIGR01234 L-ribulokinase L-rib 52.6 13 0.00028 43.0 3.6 21 2-22 2-23 (536)
184 TIGR01315 5C_CHO_kinase FGGY-f 52.5 12 0.00026 43.2 3.4 20 3-22 2-21 (541)
185 PRK13318 pantothenate kinase; 52.3 14 0.0003 38.1 3.5 20 3-22 2-21 (258)
186 PLN02914 hexokinase 51.7 92 0.002 35.3 10.0 58 149-213 204-263 (490)
187 PRK13321 pantothenate kinase; 51.6 14 0.00031 38.0 3.5 19 3-21 2-20 (256)
188 COG2971 Predicted N-acetylgluc 51.4 3.1E+02 0.0068 28.8 18.5 64 309-379 227-291 (301)
189 PRK13310 N-acetyl-D-glucosamin 51.3 2.3E+02 0.005 29.7 12.8 45 162-211 95-139 (303)
190 PTZ00186 heat shock 70 kDa pre 50.8 1.3E+02 0.0028 35.8 11.5 47 698-757 575-621 (657)
191 TIGR01311 glycerol_kin glycero 50.2 12 0.00027 42.6 3.0 20 3-22 3-22 (493)
192 TIGR02259 benz_CoA_red_A benzo 49.9 14 0.0003 40.1 3.0 20 3-22 4-23 (432)
193 KOG0994 Extracellular matrix g 49.5 5.3E+02 0.012 32.2 15.6 43 590-635 1459-1501(1758)
194 PRK00047 glpK glycerol kinase; 48.8 15 0.00032 42.0 3.4 19 3-21 7-25 (498)
195 PLN02377 3-ketoacyl-CoA syntha 48.6 34 0.00074 38.8 6.0 57 302-358 164-221 (502)
196 PF08006 DUF1700: Protein of u 48.5 42 0.00091 32.4 6.0 57 606-670 5-62 (181)
197 KOG0996 Structural maintenance 48.4 6.5E+02 0.014 31.6 17.1 42 571-615 774-815 (1293)
198 PRK04123 ribulokinase; Provisi 48.4 15 0.00033 42.5 3.4 17 3-19 5-21 (548)
199 PF08580 KAR9: Yeast cortical 48.4 2.1E+02 0.0046 34.0 12.6 43 703-745 131-174 (683)
200 PLN02902 pantothenate kinase 48.0 52 0.0011 39.5 7.5 160 193-379 213-401 (876)
201 cd02639 R3H_RRM R3H domain of 47.7 36 0.00077 26.4 4.2 30 139-168 17-46 (60)
202 KOG0994 Extracellular matrix g 47.5 4.5E+02 0.0099 32.7 14.7 36 571-616 1507-1542(1758)
203 PRK04863 mukB cell division pr 47.5 7.2E+02 0.016 32.7 17.9 61 572-644 276-339 (1486)
204 KOG0517 Beta-spectrin [Cytoske 46.2 7.5E+02 0.016 32.8 16.7 124 626-752 950-1106(2473)
205 cd02641 R3H_Smubp-2_like R3H d 46.2 54 0.0012 25.3 5.0 30 139-168 17-46 (60)
206 COG1340 Uncharacterized archae 45.7 3.6E+02 0.0077 28.2 12.2 86 626-720 62-149 (294)
207 KOG1369 Hexokinase [Carbohydra 45.5 38 0.00083 37.8 5.7 64 144-214 185-251 (474)
208 PF14574 DUF4445: Domain of un 44.9 91 0.002 34.5 8.4 54 303-356 55-108 (412)
209 COG3426 Butyrate kinase [Energ 44.4 53 0.0011 33.8 5.9 47 329-375 294-344 (358)
210 PF15290 Syntaphilin: Golgi-lo 44.3 95 0.0021 31.8 7.6 50 626-675 89-143 (305)
211 cd02646 R3H_G-patch R3H domain 42.9 54 0.0012 25.1 4.6 40 125-167 4-43 (58)
212 KOG0964 Structural maintenance 42.7 7.1E+02 0.015 30.6 15.2 28 729-756 349-376 (1200)
213 cd00529 RuvC_resolvase Hollida 42.3 20 0.00044 33.7 2.6 17 3-19 2-18 (154)
214 PLN02596 hexokinase-like 41.4 1.1E+02 0.0025 34.5 8.7 57 150-213 205-263 (490)
215 KOG1385 Nucleoside phosphatase 40.3 29 0.00063 37.6 3.6 20 193-212 212-231 (453)
216 PHA02557 22 prohead core prote 40.0 2E+02 0.0044 29.3 9.2 86 572-667 135-221 (271)
217 PF09763 Sec3_C: Exocyst compl 39.5 5E+02 0.011 31.2 14.4 121 628-757 39-169 (701)
218 PRK00039 ruvC Holliday junctio 39.5 3E+02 0.0064 26.2 10.0 148 195-381 3-156 (164)
219 PF07106 TBPIP: Tat binding pr 38.7 2.1E+02 0.0045 27.3 9.1 91 622-715 68-158 (169)
220 PRK12440 acetate kinase; Revie 38.6 1.4E+02 0.0031 32.6 8.6 45 308-356 301-346 (397)
221 PLN02669 xylulokinase 38.4 27 0.00059 40.4 3.4 20 598-617 420-439 (556)
222 KOG0517 Beta-spectrin [Cytoske 38.3 6.3E+02 0.014 33.4 14.5 128 627-754 852-1002(2473)
223 TIGR03545 conserved hypothetic 36.8 5.1E+02 0.011 30.0 13.2 12 394-405 52-63 (555)
224 TIGR00250 RNAse_H_YqgF RNAse H 36.8 23 0.0005 32.2 2.0 18 4-21 1-18 (130)
225 PRK04863 mukB cell division pr 36.8 1.1E+03 0.024 31.0 18.5 95 628-724 364-464 (1486)
226 PF02801 Ketoacyl-synt_C: Beta 36.6 44 0.00096 29.7 3.8 48 309-356 22-71 (119)
227 smart00787 Spc7 Spc7 kinetocho 36.4 5.5E+02 0.012 27.3 13.3 14 699-712 268-281 (312)
228 PF12128 DUF3584: Protein of u 36.0 9.9E+02 0.022 30.8 16.9 49 625-673 742-795 (1201)
229 PF06160 EzrA: Septation ring 36.0 7.5E+02 0.016 28.7 17.8 120 572-694 112-240 (560)
230 PF00480 ROK: ROK family; Int 35.9 1.5E+02 0.0032 28.2 7.7 89 112-211 30-134 (179)
231 PRK13331 pantothenate kinase; 35.6 38 0.00082 34.7 3.5 22 1-22 7-28 (251)
232 TIGR03185 DNA_S_dndD DNA sulfu 35.5 7.9E+02 0.017 29.1 15.1 68 571-642 369-437 (650)
233 PF04848 Pox_A22: Poxvirus A22 35.1 46 0.00099 30.8 3.6 20 1-20 1-20 (143)
234 PF02075 RuvC: Crossover junct 34.9 2.2E+02 0.0047 26.6 8.3 138 196-371 1-145 (149)
235 KOG1369 Hexokinase [Carbohydra 34.5 1.7E+02 0.0037 32.8 8.5 30 188-217 79-109 (474)
236 PF06840 DUF1241: Protein of u 34.5 2.7E+02 0.0058 26.2 8.5 49 660-710 12-60 (154)
237 PLN02854 3-ketoacyl-CoA syntha 34.4 73 0.0016 36.3 5.9 56 303-358 181-237 (521)
238 TIGR00634 recN DNA repair prot 34.3 3.7E+02 0.0079 31.3 11.8 132 575-720 251-390 (563)
239 PF02075 RuvC: Crossover junct 33.9 23 0.00049 33.2 1.5 18 3-20 1-18 (149)
240 COG0497 RecN ATPase involved i 33.7 8E+02 0.017 28.3 19.9 76 571-646 150-238 (557)
241 COG3894 Uncharacterized metal- 33.3 1.3E+02 0.0027 33.7 7.1 46 194-239 164-210 (614)
242 PF06008 Laminin_I: Laminin Do 33.3 5.5E+02 0.012 26.4 13.7 141 575-721 101-253 (264)
243 KOG1029 Endocytic adaptor prot 33.2 7.5E+02 0.016 29.4 13.2 12 596-607 397-408 (1118)
244 KOG0103 Molecular chaperones H 33.2 1.2E+02 0.0026 35.3 7.1 66 597-671 650-725 (727)
245 COG4942 Membrane-bound metallo 33.1 7.1E+02 0.015 27.6 14.9 43 629-671 111-153 (420)
246 PRK00292 glk glucokinase; Prov 33.0 39 0.00084 36.0 3.3 49 162-211 89-144 (316)
247 COG4012 Uncharacterized protei 32.6 1.2E+02 0.0025 31.0 6.1 72 195-273 2-96 (342)
248 COG0443 DnaK Molecular chapero 32.5 3.2E+02 0.0069 31.9 10.8 45 698-758 531-575 (579)
249 KOG0797 Actin-related protein 31.8 17 0.00037 40.2 0.4 51 331-381 526-591 (618)
250 PRK13326 pantothenate kinase; 31.6 48 0.001 34.3 3.5 21 2-22 7-27 (262)
251 PLN03173 chalcone synthase; Pr 30.8 1.3E+02 0.0028 33.2 7.0 51 309-359 101-152 (391)
252 PRK03918 chromosome segregatio 30.6 1.1E+03 0.024 29.0 17.6 15 707-721 360-374 (880)
253 PF00349 Hexokinase_1: Hexokin 30.3 25 0.00054 34.9 1.2 38 145-182 163-203 (206)
254 PRK13310 N-acetyl-D-glucosamin 29.8 90 0.0019 32.9 5.4 47 331-377 245-300 (303)
255 TIGR02707 butyr_kinase butyrat 29.7 1.2E+02 0.0025 32.9 6.3 44 331-374 293-340 (351)
256 PLN03170 chalcone synthase; Pr 29.6 2E+02 0.0042 31.9 8.2 51 309-359 105-156 (401)
257 PF08829 AlphaC_N: Alpha C pro 29.4 2.1E+02 0.0045 27.0 6.7 51 699-763 141-191 (194)
258 PRK13320 pantothenate kinase; 29.1 57 0.0012 33.3 3.6 21 2-22 3-23 (244)
259 KOG2196 Nuclear porin [Nuclear 28.8 6.2E+02 0.013 25.6 14.4 45 571-615 70-115 (254)
260 PRK13324 pantothenate kinase; 28.4 58 0.0013 33.6 3.5 20 3-22 2-21 (258)
261 COG5026 Hexokinase [Carbohydra 27.9 64 0.0014 35.4 3.8 30 192-221 73-103 (466)
262 PF05957 DUF883: Bacterial pro 27.3 3.3E+02 0.0072 22.9 7.5 66 575-645 5-72 (94)
263 TIGR01319 glmL_fam conserved h 26.7 46 0.001 37.0 2.5 63 150-212 193-267 (463)
264 PF01150 GDA1_CD39: GDA1/CD39 26.6 72 0.0016 35.7 4.2 20 193-212 163-182 (434)
265 PRK00409 recombination and DNA 26.4 5E+02 0.011 31.6 11.4 15 571-585 498-512 (782)
266 PRK03918 chromosome segregatio 26.2 1.1E+03 0.025 28.9 15.0 52 622-675 655-706 (880)
267 TIGR03185 DNA_S_dndD DNA sulfu 25.6 1E+03 0.022 28.3 13.7 94 627-723 399-497 (650)
268 PF01044 Vinculin: Vinculin fa 25.5 5E+02 0.011 32.5 11.4 98 628-754 381-480 (968)
269 PLN03172 chalcone synthase fam 25.5 1.6E+02 0.0034 32.5 6.5 51 308-358 100-151 (393)
270 COG0533 QRI7 Metal-dependent p 25.4 1.5E+02 0.0032 31.7 5.9 44 305-348 45-88 (342)
271 PLN03168 chalcone synthase; Pr 25.0 1.5E+02 0.0032 32.7 6.2 52 307-358 98-150 (389)
272 PHA02566 alt ADP-ribosyltransf 25.0 1.2E+03 0.025 27.5 13.9 137 596-754 330-476 (684)
273 TIGR00067 glut_race glutamate 24.9 1.4E+02 0.003 30.6 5.6 41 331-374 172-212 (251)
274 TIGR01312 XylB D-xylulose kina 24.6 41 0.0009 38.1 1.8 18 4-21 1-18 (481)
275 PRK00180 acetate kinase A/prop 24.5 1.9E+02 0.0042 31.8 6.8 46 308-356 303-349 (402)
276 KOG2517 Ribulose kinase and re 24.0 64 0.0014 36.5 3.1 17 3-19 8-24 (516)
277 PF03148 Tektin: Tektin family 24.0 7E+02 0.015 27.4 11.2 19 661-679 291-309 (384)
278 COG1940 NagC Transcriptional r 23.7 3.3E+02 0.0071 28.7 8.5 53 192-244 4-56 (314)
279 PF05378 Hydant_A_N: Hydantoin 23.7 68 0.0015 30.9 2.9 18 4-21 2-19 (176)
280 TIGR03393 indolpyr_decarb indo 23.5 2.5E+02 0.0055 32.3 8.1 61 138-207 16-77 (539)
281 PF04065 Not3: Not1 N-terminal 23.4 7.8E+02 0.017 24.9 11.7 37 704-756 113-149 (233)
282 PF13941 MutL: MutL protein 23.4 1.7E+02 0.0037 32.8 6.2 47 196-242 2-49 (457)
283 PLN02192 3-ketoacyl-CoA syntha 23.1 1.8E+02 0.0039 33.2 6.4 56 303-358 169-225 (511)
284 PRK07515 3-oxoacyl-(acyl carri 23.1 78 0.0017 34.6 3.6 38 308-345 267-304 (372)
285 TIGR01069 mutS2 MutS2 family p 23.0 6E+02 0.013 30.8 11.2 17 571-587 493-509 (771)
286 TIGR02627 rhamnulo_kin rhamnul 23.0 41 0.00088 37.9 1.3 19 598-616 360-378 (454)
287 PTZ00107 hexokinase; Provision 23.0 3.2E+02 0.0069 30.9 8.3 25 192-216 72-96 (464)
288 PF00871 Acetate_kinase: Aceto 22.7 1.6E+02 0.0034 32.5 5.7 133 193-355 198-345 (388)
289 KOG1794 N-Acetylglucosamine ki 22.7 1.9E+02 0.004 30.2 5.7 49 334-382 266-319 (336)
290 PF08392 FAE1_CUT1_RppA: FAE1/ 22.5 1.7E+02 0.0037 30.6 5.6 46 312-357 85-131 (290)
291 KOG3133 40 kDa farnesylated pr 22.5 4.5E+02 0.0097 26.9 8.2 62 602-670 142-203 (267)
292 PF09286 Pro-kuma_activ: Pro-k 22.4 1.2E+02 0.0025 28.0 4.1 46 601-646 26-75 (143)
293 PRK00865 glutamate racemase; P 22.0 1.8E+02 0.0039 30.0 5.8 42 331-375 177-218 (261)
294 cd00176 SPEC Spectrin repeats, 21.9 6.9E+02 0.015 23.7 15.7 38 714-755 118-155 (213)
295 PRK09604 UGMP family protein; 21.9 2.1E+02 0.0044 30.8 6.4 65 308-373 49-119 (332)
296 PRK12879 3-oxoacyl-(acyl carri 21.8 1.8E+02 0.0039 30.8 6.0 47 309-358 222-268 (325)
297 PRK10869 recombination and rep 21.8 1.3E+03 0.028 26.8 17.6 106 576-693 245-354 (553)
298 PLN02404 6,7-dimethyl-8-ribity 21.5 78 0.0017 29.2 2.6 75 291-377 5-79 (141)
299 KOG3973 Uncharacterized conser 21.4 1E+03 0.022 25.4 11.0 68 576-645 43-115 (465)
300 PRK10869 recombination and rep 21.4 1.3E+03 0.028 26.7 18.0 17 628-644 220-236 (553)
301 KOG4460 Nuclear pore complex, 21.3 1.2E+03 0.027 26.5 14.1 31 726-756 699-729 (741)
302 PF01548 DEDD_Tnp_IS110: Trans 21.2 88 0.0019 28.6 3.0 20 3-22 1-20 (144)
303 PF02970 TBCA: Tubulin binding 21.2 2.6E+02 0.0057 23.6 5.5 33 623-655 56-88 (90)
304 TIGR00671 baf pantothenate kin 21.0 87 0.0019 32.0 3.1 46 299-344 174-219 (243)
305 PLN02914 hexokinase 20.9 2.3E+02 0.0049 32.2 6.6 24 192-215 93-116 (490)
306 PF10368 YkyA: Putative cell-w 20.9 8.2E+02 0.018 24.2 10.6 41 713-756 137-177 (204)
307 COG2069 CdhD CO dehydrogenase/ 20.4 1.5E+02 0.0033 30.6 4.5 71 138-209 251-328 (403)
308 PF03309 Pan_kinase: Type III 20.4 99 0.0021 30.6 3.3 20 3-22 1-20 (206)
309 TIGR03286 methan_mark_15 putat 20.4 1.5E+02 0.0032 32.6 4.8 58 312-377 179-236 (404)
310 TIGR02169 SMC_prok_A chromosom 20.4 1.2E+03 0.026 29.6 14.1 45 571-615 149-193 (1164)
311 COG0216 PrfA Protein chain rel 20.3 1.1E+03 0.023 25.3 10.8 92 651-762 9-109 (363)
312 COG4020 Uncharacterized protei 20.3 1E+02 0.0022 31.2 3.2 52 329-382 266-320 (332)
313 PF12128 DUF3584: Protein of u 20.1 1.9E+03 0.042 28.2 16.5 48 703-756 744-791 (1201)
No 1
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-128 Score=1032.21 Aligned_cols=724 Identities=49% Similarity=0.769 Sum_probs=680.7
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
|+|+|||||+.+|.+|+++.+++++|.|+.|+|.||++|+|+.++|++|.+|.++..+|+.|++..+||++|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+.+.+++|+.++..+||.+++.+.|.|+.+.|++++|+||+|.+|+..++..+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCC--CCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFA--NGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~--~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l 238 (763)
++|||++++|++|.+|+|++||++++++| +.++.+|+++|||++++++|++.|..|.++++++.+|.++||++||..|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 99999999999999999999999999998 5678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHH
Q 004296 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPC 318 (763)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i 318 (763)
.+||+.+|+.+|++++..+++++.||+.+||++|+.||+|...+++|+|+|++.|++..|+|++||++|.|+++|+..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEecccce
Q 004296 319 RKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYS 398 (763)
Q Consensus 319 ~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~~ 398 (763)
.++|++++++.+||+.|++|||+||||.|++.|.++||+++.+++|.|||||+|||++||++||.||+|+|.++|+.||+
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pys 400 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYS 400 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCC-CcceE
Q 004296 399 IGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS-ENAKV 477 (763)
Q Consensus 399 i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~-~~~~i 477 (763)
|.+.|.....|+ +....+||+|.++|.+|.+||++.++|++.++|.+...+| .....|++|+++++.+... +..++
T Consensus 401 Is~~w~~~~ed~--~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp-~~~~kI~~~~i~~v~~~~~ge~skV 477 (727)
T KOG0103|consen 401 ISLRWVKQGEDG--GSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLP-YPKPKIEKWTITGVTPSEDGEFSKV 477 (727)
T ss_pred EEEEeccccccC--CCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccC-CCCCceeeEEecccccCccccccce
Confidence 999999764443 3558999999999999999999999999999999988888 7788999999999998755 67899
Q ss_pred EEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccccc
Q 004296 478 KVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAG 557 (763)
Q Consensus 478 ~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 557 (763)
+|++++|.+|+++|.+|.++++.++++ ++... ++.+.++ .. . +.....+.|+++
T Consensus 478 Kvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~~------~e~~~~~----------~~--------~-~~~~~~~~k~kv 531 (727)
T KOG0103|consen 478 KVKVRLNEHGIDTIESATLIEDIEVEE-VPEEP------MEYDDAA----------KM--------L-ERIAPAENKKKV 531 (727)
T ss_pred eEEEEEcCccceeeecceeecccchhc-cccch------hhhhcch----------hh--------h-hhhcccccccee
Confidence 999999999999999999999777665 33211 0000000 00 0 000001125678
Q ss_pred ceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 004296 558 RRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQE 637 (763)
Q Consensus 558 ~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e 637 (763)
++.+|++.....++|+..+++.+++++.+|..+|+...++.++||+||+|||+||++|.+.|..|+++++|++|...|++
T Consensus 532 k~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~ 611 (727)
T KOG0103|consen 532 KKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTD 611 (727)
T ss_pred eeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHH
Confidence 88999999888778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH
Q 004296 638 TEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPPEEQDFIISECYKAEQW 717 (763)
Q Consensus 638 ~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~~e~~~v~~~~~~~~~W 717 (763)
+++|||++|+|.++..|..||.+|+.+++ ..|+.+.+.||.+++.+.+.|+.++..+++ +..++...|++.++|
T Consensus 612 ~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~----~~~k~~~~~~~a~kw 685 (727)
T KOG0103|consen 612 TEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES----EMEKVLLEIEEAEKW 685 (727)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999987755 889999999999999
Q ss_pred HHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcCCC
Q 004296 718 LREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKGET 760 (763)
Q Consensus 718 l~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~~~ 760 (763)
+++++.+|.+++++.+| +.+++++.+.++|+..|.+++++++
T Consensus 686 ~~~~~~~q~~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 686 LERKSNKQNKLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred HhhhhhhhhcccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 99999999999999999 9999999999999999999998864
No 2
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-124 Score=934.85 Aligned_cols=602 Identities=30% Similarity=0.521 Sum_probs=572.4
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (763)
+|||||+|||||||+++++|.++|+.|++|+|.+||.|+|.+++|++|++|+++...||+||+++.|||||+.++|+.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEec-CceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 82 KDLMVLPFESCESPDGGISIKLKYL-GETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
.+++++||+++.. ++.+.++|... |+.+.|+|+++++|+|.++++.|+.++|.++.+.|+|||+||++.||+++++|.
T Consensus 117 ~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 117 KDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred hhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccc
Confidence 9999999999887 68889998876 668999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
.+|||+++++||||+|||++||+++. ....++||||+||||||||++.+++|.|+|+++.||.+|||.+||+++++
T Consensus 196 tIAgLnV~RIiNePTaAAIAYGLDKk----~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 196 TIAGLNVVRIINEPTAAAIAYGLDKK----DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred eeccceEEEeecCccHHHHHhccccc----CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 99999999999999999999999886 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK 320 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (763)
||..-++++++.|++.+.+++.+|+.+||++|+.||++.+..+.|++++++.||+-++||+.||++.-++|.....++++
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhc-CCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccccee
Q 004296 321 ALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF-GREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSI 399 (763)
Q Consensus 321 ~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f-g~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~~i 399 (763)
+|+.+++.+.+|+.|+||||++|||.||++|+++| |+++++.+|||||||+|||.+|..+|+.....++++.|++|+++
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtl 431 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTL 431 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccccc
Confidence 99999999999999999999999999999999999 79999999999999999999999999998889999999999999
Q ss_pred EEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecC--ceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCcceE
Q 004296 400 GISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSS--LFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKV 477 (763)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 477 (763)
||++.+ +.+..|+|||+.+|++|+..|++.. +-++.+...++++....+|+++|.|.++||||+|+|.|+|
T Consensus 432 GIETvG-------GVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqI 504 (663)
T KOG0100|consen 432 GIETVG-------GVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQI 504 (663)
T ss_pred eeeeec-------ceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccE
Confidence 999987 5899999999999999999998744 4445554445666667999999999999999999999999
Q ss_pred EEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccccc
Q 004296 478 KVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAG 557 (763)
Q Consensus 478 ~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 557 (763)
+|+|.+|.||||+|++.+ |.++
T Consensus 505 EVtFevDangiL~VsAeD----------------------------------------------------------Kgtg 526 (663)
T KOG0100|consen 505 EVTFEVDANGILQVSAED----------------------------------------------------------KGTG 526 (663)
T ss_pred EEEEEEccCceEEEEeec----------------------------------------------------------cCCC
Confidence 999999999999998863 4556
Q ss_pred ceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh--hhccCCCHHHHHHHHHHH
Q 004296 558 RRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS--TYRSFASDQEREGISRSL 635 (763)
Q Consensus 558 ~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~~~~e~~~l~~~l 635 (763)
++..|+|++.. +.||+++|++|.+..++++..|+..+++.++||.||+|.|.|++.+.+ .+...+++++++.+...+
T Consensus 527 ~~~kitItNd~-~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av 605 (663)
T KOG0100|consen 527 KKEKITITNDK-GRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAV 605 (663)
T ss_pred CcceEEEecCC-CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHH
Confidence 66778898876 689999999999999999999999999999999999999999999986 478999999999999999
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhh
Q 004296 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDG 675 (763)
Q Consensus 636 ~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 675 (763)
++..+||.++ .+|++++|.+|+++|..++.||...++..
T Consensus 606 ~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 606 EEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 79999999999999999999999987763
No 3
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-108 Score=875.13 Aligned_cols=747 Identities=29% Similarity=0.442 Sum_probs=634.2
Q ss_pred eEEEEEccccceEEEEEeCC-ceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 2 SVVGFDIGNENCVIATVKHR-GVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~-~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
+|++||+||.|++||++++| +++|++|..++|++|++|+|.+++|+||++|.+++.++|++++.+++.|+|+...+|.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 68999999999999999988 78999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhcCC-ceeeeCC-CCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 004296 81 QKDLMVLP-FESCESP-DGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (763)
Q Consensus 81 ~~~~~~~~-~~~~~~~-~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 158 (763)
..+.+.+| |.++.++ ++++.|.+. + ...|++|+|+||+|.+.++.|+.+...++.++|||||.||++.||+++.+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 88777655 5566664 677777654 3 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEe----------CCeEEEEEEeCCCC
Q 004296 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE----------AGHMKVLSHAFDSS 228 (763)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~----------~~~~~vl~~~~~~~ 228 (763)
||++||++++.||||.+|||+.||++++..+...+++++|||||+|+|.++++.|. ...++++++++|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999999887677889999999999999999999986 14799999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHH
Q 004296 229 LGGRDFDDVLFGYFAAKFKEQYK--INVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEEL 306 (763)
Q Consensus 229 lGG~~~D~~l~~~l~~~~~~~~~--~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l 306 (763)
|||..|..+|.+||.+.|.++++ .+++.|||+|+||.++|+++|.+||+|..+.++|+++++|+||..+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 99999999999999999999876 4688999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcC-CCCccCCCchhHHhcchHHhhhhhCCCcc
Q 004296 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-REPRRSLNASECVARGCALQCAMLSPAFR 385 (763)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg-~~~~~~~n~~eava~Gaa~~a~~~s~~~~ 385 (763)
|.++..++..||+++|..++++.++|+.|+|+||++|+|.||+.|.++.| .++.+.+|+|||+++||+++||.||..|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 67999999999999999999999999999
Q ss_pred ccceEEEecccceeEEEecCCCc-ccCCCcceeeecCCCCcCceEEEEeee-cCceEEEEEEeCCCCCCCCCCcceeEEE
Q 004296 386 VREYEVQDCNPYSIGISSDEGPI-CIGSNTNGEVFPKGQPIPCVKVLTLQR-SSLFHLELFYTNPNELPPGISSKVSCFT 463 (763)
Q Consensus 386 ~~~~~~~d~~~~~i~i~~~~~~~-~~~~~~~~~l~~~~~~~P~~k~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ig~~~ 463 (763)
++++.+.|..+|+|.+.+.+.+. -........+|++|.+||..+.++|+. +.+|.+.+.|+.- + ..+..|.
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~-----~--~nl~~ve 492 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL-----G--QNLTTVE 492 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh-----c--cCccEEE
Confidence 99999999999999999876420 000124567999999999999999986 4568877766532 1 2355899
Q ss_pred ECCCCCC----C---CCcceEEEEEEEcCCccEEEEEeeeeeccCCCCccc------------cccc--cccccccc--c
Q 004296 464 IGPFQGS----N---SENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTK------------HNAR--SKMDKMES--E 520 (763)
Q Consensus 464 i~~i~~~----~---~~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~------------~~~~--~~~~~~~~--~ 520 (763)
++|+... . .....|+++|.+|.+|++.|+.++++++....+... .+++ +++..+++ +
T Consensus 493 lsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae 572 (902)
T KOG0104|consen 493 LSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAE 572 (902)
T ss_pred EecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhh
Confidence 9998754 1 235689999999999999999999886542211110 0000 00000000 0
Q ss_pred cccCCCCC--c--cccccccc--ccc--ccCCCCcccccccccccceeeEEEeeec--cCCCCHHHHHHHHHHHHHHhcC
Q 004296 521 GVSIDSST--T--VEDVQDSA--SVQ--SKSSHSSAVSVVRDKAGRRLDISISETI--YGGMTKPELALAQETENLLAQQ 590 (763)
Q Consensus 521 ~~~~~~~~--~--~~~~~~~~--~~~--~~~~~~~~~~~~~k~~~~~~~l~i~~~~--~~~ls~~ei~~~~~~~~~~~~~ 590 (763)
....++.. + ....++++ ++. +++..+.|-.++.+.......++|.... ++-|+...+.+...++..+.++
T Consensus 573 ~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~ 652 (902)
T KOG0104|consen 573 EKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQK 652 (902)
T ss_pred hhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHh
Confidence 00000000 0 00001111 000 0001111111111111122234444333 3469999999999999999999
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHH
Q 004296 591 DITMEQTKDKKNALESYVYEMRNKLFS-TYRSFASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIE 669 (763)
Q Consensus 591 D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~ 669 (763)
|+.+.++++|.|.||+|+|++.++|++ +|..|.+++|+..|.+.+..+.+||++++.++++++|.+++.+|++++..+.
T Consensus 653 e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 653 EKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKN 732 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999986 7999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhcC-------------CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCce
Q 004296 670 NRYKDGEARAQATRDLLQCIVEYRTAVGS-------------LPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPIL 736 (763)
Q Consensus 670 ~R~~e~~~rp~a~~~l~~~l~~~~~~~~~-------------i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~ 736 (763)
.|..++.++|+.++.|...|+...+++.. .+..++..|.+.++++..|+++....|.++++++||++
T Consensus 733 ~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~ 812 (902)
T KOG0104|consen 733 FREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVL 812 (902)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccc
Confidence 99999999999999999999998887644 45567889999999999999999999999999999999
Q ss_pred eHHHHHHHHHHHHHHHHhhhcC
Q 004296 737 WSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 737 ~~~di~~k~~~l~~~~~~l~~~ 758 (763)
+++||..|++.|++.+.+++|+
T Consensus 813 k~kei~~K~k~Ldrev~~~lnK 834 (902)
T KOG0104|consen 813 KVKEIEEKAKSLDREVLYLLNK 834 (902)
T ss_pred cHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999976
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.8e-103 Score=906.98 Aligned_cols=602 Identities=30% Similarity=0.514 Sum_probs=553.3
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
+++||||||||||+||++++++++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+...+.+||.++..+++...+.+.+.++...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999988889899999888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999986532 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-cccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHH
Q 004296 241 YFAAKFKEQY-KINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCR 319 (763)
Q Consensus 241 ~l~~~~~~~~-~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (763)
|+.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.+++++++.++++.|||++|+++|+|+++++..+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877 477888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcC-CCCccCCCchhHHhcchHHhhhhhCCC--ccccceEEEeccc
Q 004296 320 KALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-REPRRSLNASECVARGCALQCAMLSPA--FRVREYEVQDCNP 396 (763)
Q Consensus 320 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg-~~~~~~~n~~eava~Gaa~~a~~~s~~--~~~~~~~~~d~~~ 396 (763)
++|+.++++..+|+.|+||||+||||+|+++|+++|+ ..+..++|||+|||+|||++|+++++. ++++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 9999999999999999999999999999999999996 678889999999999999999999985 7889999999999
Q ss_pred ceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc----eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCC
Q 004296 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS 472 (763)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~ 472 (763)
|+||++..+ +.+.+||++|+++|++++.+|++..+ +.|.+++++. ....+|..||+|.|.++++.+.
T Consensus 401 ~slgi~~~~-------~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~--~~~~~n~~lg~~~i~~i~~~~~ 471 (653)
T PTZ00009 401 LSLGLETAG-------GVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGER--AMTKDNNLLGKFHLDGIPPAPR 471 (653)
T ss_pred cccCccccC-------CceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEeccc--ccCCCCceEEEEEEcCCCCCCC
Confidence 999998764 46789999999999999999976432 6777765443 3347889999999999998887
Q ss_pred CcceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccc
Q 004296 473 ENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVV 552 (763)
Q Consensus 473 ~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (763)
+.+.|+|+|++|.+|+|+|++.+
T Consensus 472 g~~~i~v~f~id~~Gil~v~~~~--------------------------------------------------------- 494 (653)
T PTZ00009 472 GVPQIEVTFDIDANGILNVSAED--------------------------------------------------------- 494 (653)
T ss_pred CCceEEEEEEECCCCeEEEEEec---------------------------------------------------------
Confidence 87899999999999999998752
Q ss_pred cccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh-hhccCCCHHHHHHH
Q 004296 553 RDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS-TYRSFASDQEREGI 631 (763)
Q Consensus 553 ~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l 631 (763)
+.+.+...++|.... .+|+.++++++++.+.+|..+|+.++++.++||+||+|||++|++|++ +|..++++++|++|
T Consensus 495 -~~t~~~~~~~i~~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l 572 (653)
T PTZ00009 495 -KSTGKSNKITITNDK-GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATI 572 (653)
T ss_pred -ccCCceeeEEEeecc-ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHH
Confidence 111122345555433 579999999999999999999999999999999999999999999974 58999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhh
Q 004296 632 SRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (763)
Q Consensus 632 ~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (763)
.+.++++++|||+ +++++.++|++|+++|+++++||..|++.
T Consensus 573 ~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 573 EKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999995 57899999999999999999999999753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-102 Score=897.59 Aligned_cols=610 Identities=25% Similarity=0.441 Sum_probs=549.7
Q ss_pred Ce-EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEc-CCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCH
Q 004296 1 MS-VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG-EKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDP 78 (763)
Q Consensus 1 m~-vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 78 (763)
|. |||||||||||+||++.+|.+.++.|..|+|.|||+|+|. ++++++|..|+.++..+|.++++++||+||+.+.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 53 8999999999999999999999999999999999999997 46899999999999999999999999999999865
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 004296 79 VVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (763)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 158 (763)
++.+...+||.+...++|.+.+.+...+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 156 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRD 156 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 5556778999999988898888765443 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 004296 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (763)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l 238 (763)
||++|||++++||+||+|||++|++.+ ..+.++|||||||||||+|++++.++.++|+++.|+.++||.+||..|
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l 231 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDR-----SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRI 231 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhcccc-----CCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHH
Confidence 999999999999999999999999865 346799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHH
Q 004296 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKI 314 (763)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (763)
++||.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++...|||++|+++|+++++++
T Consensus 232 ~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~ 311 (668)
T PRK13410 232 VDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRL 311 (668)
T ss_pred HHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999998999999999999999999999999999999887643 46888999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEec
Q 004296 315 AIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDC 394 (763)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~ 394 (763)
..+|+++|+.+++++.+|+.|+||||+||||+|++.|+++||.++...+||++|||+|||++|+++++. ++++.+.|+
T Consensus 312 ~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv 389 (668)
T PRK13410 312 LRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDV 389 (668)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEee
Confidence 999999999999999999999999999999999999999999888899999999999999999999984 678999999
Q ss_pred ccceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeec--CceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCC
Q 004296 395 NPYSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS 472 (763)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~ 472 (763)
+||+||+++.+ +.+.+|||+|+++|++++.+|++. ++..+.+.+.+++.....+|..||+|.|.++++++.
T Consensus 390 ~p~slgie~~~-------g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~ 462 (668)
T PRK13410 390 TPLSLGLETIG-------GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPR 462 (668)
T ss_pred ccccccceecC-------CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCC
Confidence 99999999875 468899999999999999999864 345555554455555568899999999999999988
Q ss_pred CcceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccc
Q 004296 473 ENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVV 552 (763)
Q Consensus 473 ~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (763)
|.++|+|+|++|.||+|+|++.+
T Consensus 463 g~~~I~v~f~id~nGiL~V~a~d--------------------------------------------------------- 485 (668)
T PRK13410 463 GVPQVQVAFDIDANGILQVSATD--------------------------------------------------------- 485 (668)
T ss_pred CCCeEEEEEEECCCcEEEEEEEE---------------------------------------------------------
Confidence 88999999999999999998863
Q ss_pred cccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh---hhccCCCHHHHH
Q 004296 553 RDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFASDQERE 629 (763)
Q Consensus 553 ~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~~~~e~~ 629 (763)
+.+.++..++|... .+|+.++++++++++.+|..+|+.++++.++||+||+|||++|++|.+ .|..++++++|+
T Consensus 486 -~~tg~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~ 562 (668)
T PRK13410 486 -RTTGREQSVTIQGA--STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRR 562 (668)
T ss_pred -cCCCceeeeeeccc--ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHH
Confidence 11122234455433 479999999999999999999999999999999999999999999975 588999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHH
Q 004296 630 GISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIV 690 (763)
Q Consensus 630 ~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 690 (763)
++...++++++|||+++.+..++.|.++++.|+.++.||..|+.| .-..-+..+++++.
T Consensus 563 ~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 621 (668)
T PRK13410 563 AVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFG 621 (668)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcc
Confidence 999999999999999988889999999999999999999999999 22223334444443
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=3.4e-100 Score=880.10 Aligned_cols=586 Identities=28% Similarity=0.480 Sum_probs=537.1
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC-CceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
++||||||||||+||++.+++++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 589999999999999999999999999999999999999974 5899999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+...+.+||.++..++|.+.+.+. + ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQ--G--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 998999999999988888777653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.+|.++|+++.|+.++||++||..|++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~ 272 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDK-----NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILN 272 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhcccc-----CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHH
Confidence 9999999999999999999999764 34689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (763)
||..+|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .++.+.|||++|+++|+|+++++..
T Consensus 273 ~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~ 352 (663)
T PTZ00400 273 YLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIE 352 (663)
T ss_pred HHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999998999999999999999999999999999999998877654 4789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccc
Q 004296 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (763)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~ 396 (763)
+++++|+++++.+.+|+.|+||||+||+|+|++.|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 353 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p 430 (663)
T PTZ00400 353 PCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTP 430 (663)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999885 57899999999
Q ss_pred ceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc----eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCC
Q 004296 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS 472 (763)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~ 472 (763)
|+||+++.+ +.+.+|||+|+++|++++.+|++..+ +.|.+++++. ....+|..||+|.|.++++.+.
T Consensus 431 ~slgi~~~~-------g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~--~~~~~n~~lg~~~i~~i~~~~~ 501 (663)
T PTZ00400 431 LSLGIETLG-------GVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGER--EMAADNKLLGQFDLVGIPPAPR 501 (663)
T ss_pred cceEEEecC-------CeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecC--ccCCcCceeEEEEEcCCCCCCC
Confidence 999999876 46889999999999999999987543 5666655433 3347889999999999999888
Q ss_pred CcceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccc
Q 004296 473 ENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVV 552 (763)
Q Consensus 473 ~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (763)
|.+.|+|+|.+|.+|+|+|++.+
T Consensus 502 g~~~i~v~f~id~~Gil~v~a~~--------------------------------------------------------- 524 (663)
T PTZ00400 502 GVPQIEVTFDVDANGIMNISAVD--------------------------------------------------------- 524 (663)
T ss_pred CCceEEEEEEECCCCCEEEEEEe---------------------------------------------------------
Confidence 88899999999999999998763
Q ss_pred cccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 004296 553 RDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGIS 632 (763)
Q Consensus 553 ~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~ 632 (763)
+.++++..++|+.. .+|+.++++++++++.+|..+|+.++++.++||+||+|||.+|++|.+ +..++++++++++.
T Consensus 525 -~~~~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e-~~~~~s~~ere~i~ 600 (663)
T PTZ00400 525 -KSTGKKQEITIQSS--GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD-LKDKISDADKDELK 600 (663)
T ss_pred -ccCCcEEEEEeecc--ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCHHHHHHHH
Confidence 11223345555543 479999999999999999999999999999999999999999999975 88999999999999
Q ss_pred HHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhh
Q 004296 633 RSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (763)
Q Consensus 633 ~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (763)
+.++++++|||++ +.++|++++++|++++.++..++
T Consensus 601 ~~l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 601 QKITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999975 47899999999999999999754
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.9e-100 Score=878.02 Aligned_cols=592 Identities=29% Similarity=0.478 Sum_probs=535.6
Q ss_pred Ce-EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC-CceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCH
Q 004296 1 MS-VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDP 78 (763)
Q Consensus 1 m~-vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 78 (763)
|. +||||||||||+||++.+|.+.++.|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.++++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 53 89999999999999999999999999999999999999975 58999999999999999999999999999999886
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 004296 79 VVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (763)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 158 (763)
. .+.+++||.++...+|.+.+.+. + ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 4 35678999999888888776653 3 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 004296 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (763)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l 238 (763)
||++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~----~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQ----DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccc----CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 9999999999999999999999998653 346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHH
Q 004296 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKI 314 (763)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (763)
++||.++|..+++.++..+++++.||+.+||++|+.||.+..+.+++++++.+ .++.+.|||++|+++|+|+++++
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~ 310 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEAT 310 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999877543 57899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcC-CCCccCCCchhHHhcchHHhhhhhCCCccccceEEEe
Q 004296 315 AIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-REPRRSLNASECVARGCALQCAMLSPAFRVREYEVQD 393 (763)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg-~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d 393 (763)
..+|+++|+++++.+.+|+.|+||||+||||+|++.|+++|| ..+..++|||+|||+|||++|+++++. ++++.+.|
T Consensus 311 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~d 388 (653)
T PRK13411 311 IEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLD 388 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeee
Confidence 999999999999999999999999999999999999999996 678889999999999999999999975 67899999
Q ss_pred cccceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeee--cCceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCC
Q 004296 394 CNPYSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQR--SSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSN 471 (763)
Q Consensus 394 ~~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~ 471 (763)
++||+||+++.+ +.+.+||++|+++|++++.+|.+ +++..+.+.+.+++.....+|..||.|.|.++++.+
T Consensus 389 v~p~slgi~~~~-------~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~ 461 (653)
T PRK13411 389 VTPLSLGIETLG-------EVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAP 461 (653)
T ss_pred cccceeeEEecC-------CceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCC
Confidence 999999999876 47889999999999999999986 444555554444455555789999999999999988
Q ss_pred CCcceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccc
Q 004296 472 SENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSV 551 (763)
Q Consensus 472 ~~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (763)
.|.++|+|+|.+|.+|+|+|++.+
T Consensus 462 ~g~~~i~v~f~id~~Gil~v~a~d-------------------------------------------------------- 485 (653)
T PRK13411 462 RGVPQIEVSFEIDVNGILKVSAQD-------------------------------------------------------- 485 (653)
T ss_pred CCCccEEEEEEECCCCeEEEEEee--------------------------------------------------------
Confidence 888899999999999999998853
Q ss_pred ccccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 004296 552 VRDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGI 631 (763)
Q Consensus 552 ~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l 631 (763)
..+.++..+.+... .+||.++++++++++.+|..+|+.++++.++||+||+|||++|++|++ +..++++++|+++
T Consensus 486 --~~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-~~~~~~~~er~~i 560 (653)
T PRK13411 486 --QGTGREQSIRITNT--GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE-NGELISEELKQRA 560 (653)
T ss_pred --ccCCceEeeEEecc--ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHH
Confidence 01112234445432 469999999999999999999999999999999999999999999975 6889999999999
Q ss_pred HHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhh
Q 004296 632 SRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (763)
Q Consensus 632 ~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (763)
.+.++++++|||++ +++.++|++++++|++.+.|+..+++.
T Consensus 561 ~~~l~~~~~wL~~~--~~~~~~~~~~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 561 EQKVEQLEAALTDP--NISLEELKQQLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999984 578999999999999999999987653
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.5e-98 Score=868.35 Aligned_cols=587 Identities=29% Similarity=0.498 Sum_probs=535.7
Q ss_pred Ce-EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEc-CCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCH
Q 004296 1 MS-VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG-EKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDP 78 (763)
Q Consensus 1 m~-vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 78 (763)
|+ +||||||||||+||++++|.++++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+. ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 64 8999999999999999999999999999999999999997 67899999999999999999999999999998 67
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 004296 79 VVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (763)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 158 (763)
.++.+.+.+||.++..++|...+.+ .| +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 7888889999999998888877654 34 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 004296 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (763)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l 238 (763)
||++|||++++||+||+|||++|++.+ ..+.++|||||||||||+|++++.++.++|+++.|+.++||.+||..|
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l 229 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDK-----KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 229 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhcc-----CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHH
Confidence 999999999999999999999999765 246899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHH
Q 004296 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKI 314 (763)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (763)
++|+.++|+.+++.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|+|+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~ 309 (627)
T PRK00290 230 IDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERT 309 (627)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887653 67889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEec
Q 004296 315 AIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDC 394 (763)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~ 394 (763)
..+|+++|+.++++..+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|+
T Consensus 310 ~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d~ 387 (627)
T PRK00290 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDV 387 (627)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeeec
Confidence 999999999999999999999999999999999999999999888899999999999999999999984 678999999
Q ss_pred ccceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc----eEEEEEEeCCCCCCCCCCcceeEEEECCCCCC
Q 004296 395 NPYSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGS 470 (763)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~ 470 (763)
+|++||+++.+ +.+.+|||+|+++|++++.+|.+..+ +.|.+++++ .....+|..||+|.|.++++.
T Consensus 388 ~~~slgi~~~~-------~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge--~~~~~~~~~lg~~~i~~~~~~ 458 (627)
T PRK00290 388 TPLSLGIETLG-------GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGE--REMAADNKSLGRFNLTGIPPA 458 (627)
T ss_pred cceEEEEEecC-------CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEec--ccccCcCceEEEEEECCCCCC
Confidence 99999999875 46889999999999999999987554 566666554 334478889999999999988
Q ss_pred CCCcceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccc
Q 004296 471 NSENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVS 550 (763)
Q Consensus 471 ~~~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (763)
+.+.+.|+|+|.+|.+|+|+|++.+
T Consensus 459 ~~g~~~i~v~f~~d~~gil~v~a~~------------------------------------------------------- 483 (627)
T PRK00290 459 PRGVPQIEVTFDIDANGIVHVSAKD------------------------------------------------------- 483 (627)
T ss_pred CCCCceEEEEEEECCCceEEEEEEE-------------------------------------------------------
Confidence 8887899999999999999998753
Q ss_pred cccccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHH
Q 004296 551 VVRDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREG 630 (763)
Q Consensus 551 ~~~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~ 630 (763)
+.+.+...+++... .+|+.++++++++++.+|...|+..+++.++||+||+|||.+|++|+ ++..++++++|++
T Consensus 484 ---~~~~~~~~~~i~~~--~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~-~~~~~~~~~e~~~ 557 (627)
T PRK00290 484 ---KGTGKEQSITITAS--SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK-ELGDKVPADEKEK 557 (627)
T ss_pred ---ccCCceeEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCHHHHHH
Confidence 11122234444433 46999999999999999999999999999999999999999999997 4888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhh
Q 004296 631 ISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (763)
Q Consensus 631 l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (763)
+.+.|+++++|||++ +.++|++++++|+++++|+..|++.
T Consensus 558 i~~~l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 558 IEAAIKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999975 6789999999999999999998754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=8.5e-99 Score=868.55 Aligned_cols=589 Identities=27% Similarity=0.439 Sum_probs=531.0
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC-CceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
+|||||||||||+||++.+|.++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.+.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 489999999999999999999999999999999999999974 5799999999999999999999999999999876 4
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+.+.+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 566788999999888898888776555 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
++|||++++||+||+|||++|++.. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEK-----KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 9999999999999999999999764 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccC----CcceEEEecHHHHHHHHhhHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMD----EKDVRGFIKREEFEELASGLTEKIAI 316 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~efe~l~~~~~~~i~~ 316 (763)
|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++...|||++|+++|+++++++..
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~ 350 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKT 350 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999887643 35788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccc
Q 004296 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (763)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~ 396 (763)
+|+++|+.+++.+.+|+.|+||||+||||+|+++|+++||..+...+|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 351 ~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p 428 (673)
T PLN03184 351 PVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTP 428 (673)
T ss_pred HHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888889999999999999999999984 67899999999
Q ss_pred ceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeec--CceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCc
Q 004296 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (763)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (763)
|+||+++.+ +.+.+|||+|+++|++++.+|.+. +++.+.+.+.+++.....+|..||+|.|.++++.+.+.
T Consensus 429 ~slgi~~~~-------~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~ 501 (673)
T PLN03184 429 LSLGLETLG-------GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 501 (673)
T ss_pred ccceEEecC-------CeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCC
Confidence 999999975 468899999999999999999875 45667666555554445788999999999999988888
Q ss_pred ceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 004296 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (763)
Q Consensus 475 ~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (763)
++|+|+|.+|.+|+|+|++.+ +
T Consensus 502 ~~i~v~f~id~~GiL~V~a~~----------------------------------------------------------~ 523 (673)
T PLN03184 502 PQIEVKFDIDANGILSVSATD----------------------------------------------------------K 523 (673)
T ss_pred ceEEEEEEeCCCCeEEEEEEe----------------------------------------------------------c
Confidence 899999999999999999863 1
Q ss_pred cccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 004296 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (763)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (763)
.+.++..+++... .+||.++++++++++.+|..+|+.++++.++||+||+|||++|++|.+ +..++++++|+++.+.
T Consensus 524 ~t~~~~~~~i~~~--~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~ 600 (673)
T PLN03184 524 GTGKKQDITITGA--STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE-LGDKVPADVKEKVEAK 600 (673)
T ss_pred CCCeEEEEEeccc--ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHH
Confidence 1223334555532 469999999999999999999999999999999999999999999964 8889999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhh
Q 004296 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYK 673 (763)
Q Consensus 635 l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~ 673 (763)
|+++++|||.++ .+.+++++++|.+...++..+++
T Consensus 601 l~~~e~wL~~~d----~~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 601 LKELKDAIASGS----TQKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999763 45677777777777777766543
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.6e-97 Score=856.56 Aligned_cols=590 Identities=29% Similarity=0.455 Sum_probs=532.6
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC-CceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
.+||||||||||+||++.+|.++++.|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 589999999999999999999999999999999999999975 5799999999999999999999999999999865 5
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
....+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 556678999999888898888765544 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDK-----KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhcccc-----CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 9999999999999999999999764 34578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (763)
|+.++|+.+++.++..+++++.+|+.+||++|+.||.+..+.+.++++..+ .++...|+|++||++|+++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877542 4688899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccc
Q 004296 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (763)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~ 396 (763)
+|+++|+.+++.+.+|+.|+||||+||+|.|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~ 391 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTP 391 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeeec
Confidence 9999999999999999999999999999999999999999888899999999999999999999874 67899999999
Q ss_pred ceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeec--CceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCc
Q 004296 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (763)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (763)
|+||+++.+ +.+.+|||+|+++|++++.+|++. ++..+.+.+.+++.....+|..||+|.|.++++.+.+.
T Consensus 392 ~~lgi~~~~-------~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~ 464 (621)
T CHL00094 392 LSLGVETLG-------GVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGV 464 (621)
T ss_pred eeeeeeccC-------CEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCC
Confidence 999999875 478899999999999999999874 34455544444444445789999999999999888887
Q ss_pred ceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 004296 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (763)
Q Consensus 475 ~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (763)
++|+|+|++|.+|+|+|++.+ +
T Consensus 465 ~~i~v~f~id~~Gil~v~~~~----------------------------------------------------------~ 486 (621)
T CHL00094 465 PQIEVTFDIDANGILSVTAKD----------------------------------------------------------K 486 (621)
T ss_pred CcEEEEEEECCCCeEEEEEee----------------------------------------------------------c
Confidence 899999999999999999863 1
Q ss_pred cccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 004296 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (763)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (763)
.+.+...+++... .+|+.++++++++++.+|..+|+..+++.++||.||+|||.+|++|++ +..++++++|+++.+.
T Consensus 487 ~t~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~ 563 (621)
T CHL00094 487 GTGKEQSITIQGA--STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE-LKDKISEEKKEKIENL 563 (621)
T ss_pred cCCceeeeeeccc--hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-HhccCCHHHHHHHHHH
Confidence 1122234445432 469999999999999999999999999999999999999999999975 8889999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhh
Q 004296 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (763)
Q Consensus 635 l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (763)
++++++|||+++ .++|++++++|+++++|+..+++.
T Consensus 564 l~~~~~wl~~~~----~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 564 IKKLRQALQNDN----YESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999863 479999999999999999986544
No 11
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=2.3e-97 Score=848.86 Aligned_cols=588 Identities=27% Similarity=0.445 Sum_probs=536.6
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (763)
.+||||||||||+||++++++++++.|..|.|.+||+|+|.++++++|..|+.++..+|.++++++||+||+.+.++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHH
Q 004296 82 KDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAAS 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~ 161 (763)
...+.+||.++..++|.+.+.. +..+.++|+++++++|++|+..|+.++|.++.++|||||+||++.||+++++||+
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 9999999999988888766543 2236899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHH
Q 004296 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGY 241 (763)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~ 241 (763)
+|||++++||+||+|||++|++.. ..+.++||||+||||||+||+++.+|.++|+++.|+.+|||++||.+|++|
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~-----~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDK-----TKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccC-----CCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 999999999999999999999764 346799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHHHHH
Q 004296 242 FAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAIP 317 (763)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~~ 317 (763)
+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999999999998999999999999999999999999999998876542 45889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEecccc
Q 004296 318 CRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPY 397 (763)
Q Consensus 318 i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~ 397 (763)
++++|+++++++.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++||
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~ 417 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTPL 417 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeeccc
Confidence 999999999999999999999999999999999999999878889999999999999999999985 578999999999
Q ss_pred eeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc----eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCC
Q 004296 398 SIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSE 473 (763)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~ 473 (763)
+||+++.+ +.+.+|||+|++||++++.+|++..| +.|.+++++. ....+|..||+|+|.++|+.+.|
T Consensus 418 slgie~~~-------g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~--~~~~~n~~lg~~~l~~ip~~~~G 488 (657)
T PTZ00186 418 SLGIETLG-------GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGER--EMAADNQMMGQFDLVGIPPAPRG 488 (657)
T ss_pred cccceecC-------CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecc--cccccccccceEEEcCCCCCCCC
Confidence 99999876 47889999999999999999987543 5666765543 33478999999999999999999
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccc
Q 004296 474 NAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVR 553 (763)
Q Consensus 474 ~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (763)
.++|+|+|.+|.||+|+|++.+
T Consensus 489 ~~~I~Vtf~iD~nGiL~V~a~d---------------------------------------------------------- 510 (657)
T PTZ00186 489 VPQIEVTFDIDANGICHVTAKD---------------------------------------------------------- 510 (657)
T ss_pred CCcEEEEEEEcCCCEEEEEEEE----------------------------------------------------------
Confidence 8999999999999999999864
Q ss_pred ccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 004296 554 DKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISR 633 (763)
Q Consensus 554 k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~ 633 (763)
+.+++...+.|... .+|++++++++.+...++...|+.++++.+++|.+|+++|.++..+.+. ..+++++++.+.+
T Consensus 511 ~~tg~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 586 (657)
T PTZ00186 511 KATGKTQNITITAN--GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKT 586 (657)
T ss_pred ccCCcEEEEEeccC--ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccCCHHHHHHHHH
Confidence 33444556666643 3699999999999999999999999999999999999999999999652 4589999999999
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhh
Q 004296 634 SLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (763)
Q Consensus 634 ~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (763)
.+...++||..+ +.+.+.|++++++|++.+.++..++
T Consensus 587 ~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 623 (657)
T PTZ00186 587 LVAELRKAMENP--NVAKDDLAAATDKLQKAVMECGRTE 623 (657)
T ss_pred HHHHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999743 4567899999999999999988743
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=7.7e-97 Score=852.00 Aligned_cols=586 Identities=28% Similarity=0.478 Sum_probs=528.7
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCC-ceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
.|||||||||||+||++++|.++++.|..|+|.+||+|+|.++ ++++|..|..++.++|.++++++||+||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999855 89999999999999999999999999999983 46
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+...+.+||. +..++|.+.+.+. | +.++|+++++++|++|+..|+.+++.++.++|||||+||++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6777889999 5566788777764 3 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+.++||.+||..|++
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS----KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc----CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 99999999999999999999997652 34689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (763)
|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+|+++++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~ 309 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKE 309 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877543 5788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccc
Q 004296 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (763)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~ 396 (763)
+|+++|+.+++++.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 310 ~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~ 387 (595)
T TIGR02350 310 PVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTP 387 (595)
T ss_pred HHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999886 67899999999
Q ss_pred ceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc--eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCc
Q 004296 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL--FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (763)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (763)
|+||+++.+ +.+.+||++|+++|++++.+|.+..+ ..+.+.+..++.....+|..||+|.|.++++.+.+.
T Consensus 388 ~~igi~~~~-------~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~ 460 (595)
T TIGR02350 388 LSLGIETLG-------GVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGV 460 (595)
T ss_pred ceeEEEecC-------CceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCC
Confidence 999999875 46889999999999999999987554 344443333344445788999999999999888787
Q ss_pred ceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 004296 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (763)
Q Consensus 475 ~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (763)
++|+|+|.+|.+|+|+|++.+ .
T Consensus 461 ~~i~v~f~~d~~G~l~v~~~~----------------------------------------------------------~ 482 (595)
T TIGR02350 461 PQIEVTFDIDANGILHVSAKD----------------------------------------------------------K 482 (595)
T ss_pred ceEEEEEEEcCCCeEEEEEEE----------------------------------------------------------c
Confidence 899999999999999998863 1
Q ss_pred cccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 004296 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (763)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (763)
.+.+...++++.. .+||.++++++++++.+|...|+.++++.++||.||+|||.+|++|++ +..++++++|+++.+.
T Consensus 483 ~~~~~~~~~i~~~--~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~-~~~~~~~~e~~~l~~~ 559 (595)
T TIGR02350 483 GTGKEQSITITAS--SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE-AGDKLPAEEKEKIEKA 559 (595)
T ss_pred cCCceEEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHH
Confidence 1122234455433 369999999999999999999999999999999999999999999975 6889999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhh
Q 004296 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (763)
Q Consensus 635 l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (763)
++++++|||++ +..+|++++++|+++++++..++
T Consensus 560 l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 560 VAELKEALKGE----DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 56799999999999999988754
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=4.9e-94 Score=822.21 Aligned_cols=579 Identities=28% Similarity=0.436 Sum_probs=520.4
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCC-ceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHHH
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (763)
+||||||||||+||++.+|.++++.|..|+|.+||+|+|.++ .+++|..|+.++.++|.++++++|||||+.+.++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999855 789999999999999999999999999999877532
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHH
Q 004296 82 KDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAAS 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~ 161 (763)
.+.+||.++..++|.+.+.+.. ..++|+++++++|++|+..|+.+++.++.++|||||+||++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 5678999988888888877642 2689999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHH
Q 004296 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGY 241 (763)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~ 241 (763)
+|||++++||+||+|||++|++.+ ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|++|
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDK-----ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhcc-----CCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999765 346789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHH
Q 004296 242 FAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKA 321 (763)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (763)
+.++ ++.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.+.|||++|+++|+|+++++..+++++
T Consensus 229 l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 229 ILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred HHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9865 45555678999999999999999999999988888874 68899999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEecccceeEE
Q 004296 322 LADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSIGI 401 (763)
Q Consensus 322 l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~~i~i 401 (763)
|+.+++.+.+|+.|+||||+||||+|++.|+++||..+..++|||+|||+|||++|+++++.++.+++.+.|++||+||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999998888899999999999999
Q ss_pred EecCCCcccCCCcceeeecCCCCcCceEEEEeee--cCceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCcceEEE
Q 004296 402 SSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQR--SSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKVKV 479 (763)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v 479 (763)
++.+ +.+.+|||+|+++|++++..|++ +++..+.+.+.+|+.....+|..||+|.|.++++.+.|.++|.|
T Consensus 383 ~~~~-------g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 455 (599)
T TIGR01991 383 ETMG-------GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRV 455 (599)
T ss_pred EecC-------CEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEE
Confidence 9976 47889999999999999888875 44555555444445444578999999999999998888889999
Q ss_pred EEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccccccce
Q 004296 480 TVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAGRR 559 (763)
Q Consensus 480 ~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 559 (763)
+|++|.||+|+|++.+ +.+.++
T Consensus 456 ~f~id~~gil~V~a~~----------------------------------------------------------~~t~~~ 477 (599)
T TIGR01991 456 TFQVDADGLLTVSAQE----------------------------------------------------------QSTGVE 477 (599)
T ss_pred EEEECCCCeEEEEEEE----------------------------------------------------------CCCCcE
Confidence 9999999999999863 112222
Q ss_pred eeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 004296 560 LDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETE 639 (763)
Q Consensus 560 ~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~ 639 (763)
..+.|... .+|+.++++++.+.+.++..+|+..+++.+++|.+|+|+|.++..+.+ +..++++++|+++...+++.+
T Consensus 478 ~~~~i~~~--~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 554 (599)
T TIGR01991 478 QSIQVKPS--YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA-DGDLLSEDERAAIDAAMEALQ 554 (599)
T ss_pred EEEecccc--cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHH
Confidence 33445433 369999999999999999999999999999999999999999998854 556899999999999999999
Q ss_pred HHhhcCCCCcCHHHHHHHHHHHHhchhhHHHh
Q 004296 640 EWLYDDGDDETANTYASKLEDLKKLVDPIENR 671 (763)
Q Consensus 640 ~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 671 (763)
+||+++ +...++++.++|++.+.++..+
T Consensus 555 ~~l~~~----~~~~~~~~~~~l~~~~~~~~~~ 582 (599)
T TIGR01991 555 KALQGD----DADAIKAAIEALEEATDNFAAR 582 (599)
T ss_pred HHHhcC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 999965 4678999999999999888763
No 14
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-96 Score=798.17 Aligned_cols=602 Identities=31% Similarity=0.510 Sum_probs=562.4
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
|.+||||||||++||+++.++.++++.|+.|+|.+||+|+|.++++++|.+|..+..+||.|+++++||++|+.++++.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+..+++|||.+....++.+.+.+.+.++.+.++|+++.+++|.+++..|+.++|..+.++|+|||+||+..||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 99999999999877677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
.+|||+++++|+||+|||++|++++. .....+|||+|+||||||+|++.+.+|.+.|+++.++.++||.+||+.|.+
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~---~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKK---VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhcccc---ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 99999999999999999999997764 256788999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK 320 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (763)
|+..+|+.+++.++..|+++++||+.+||++|+.||....+.+.+++|+++.|+...|+|.+||.+|.+++.++..++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhc-CCCCccCCCchhHHhcchHHhhhhhCCC--ccccceEEEecccc
Q 004296 321 ALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF-GREPRRSLNASECVARGCALQCAMLSPA--FRVREYEVQDCNPY 397 (763)
Q Consensus 321 ~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f-g~~~~~~~n~~eava~Gaa~~a~~~s~~--~~~~~~~~~d~~~~ 397 (763)
+|+++++++.+|+.|+||||++|+|.++..++++| |+.+..++||||+||+|||++||.+++. ..+.++.+.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999 5888999999999999999999999874 34578999999999
Q ss_pred eeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc----eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCC
Q 004296 398 SIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSE 473 (763)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~ 473 (763)
++||+..+ +.+.++|++|+++|++++.+|++..| +.|.+| ++++....+|.++|.|.++|+||++.+
T Consensus 404 ~~gve~a~-------~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~Vy--Eger~~~kdn~~lg~feL~gippaprg 474 (620)
T KOG0101|consen 404 SLGVETAG-------GVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVY--EGERAMTKDNNLLGKFELTGIPPAPRG 474 (620)
T ss_pred cccccccC-------CcceeeeecccccceeeeeeeeeecCCCCceeEEEE--eccccccccccccceeeecCCCccccC
Confidence 99999886 57999999999999999999987655 345553 445667799999999999999999999
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccc
Q 004296 474 NAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVR 553 (763)
Q Consensus 474 ~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (763)
.+.|+|+|.+|.+|+|.|++.+
T Consensus 475 vp~IevtfdiD~ngiL~Vta~d---------------------------------------------------------- 496 (620)
T KOG0101|consen 475 VPQIEVTFDIDANGILNVTAVD---------------------------------------------------------- 496 (620)
T ss_pred CcceeEEEecCCCcEEEEeecc----------------------------------------------------------
Confidence 9999999999999999999874
Q ss_pred ccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 004296 554 DKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISR 633 (763)
Q Consensus 554 k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~ 633 (763)
+.+++...+.|++.. +.||.++|++|....+.+..+|...+.+..++|.||+|+|.++..+++.- ..++++.+.++..
T Consensus 497 ~stgK~~~i~i~n~~-grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~-~~i~~~~~~~~~~ 574 (620)
T KOG0101|consen 497 KSTGKENKITITNDK-GRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK-GKINEEDKQKILD 574 (620)
T ss_pred ccCCccceEEEeccc-ceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-cccChhhhhhHHH
Confidence 334455566776665 78999999999999999999999999999999999999999999998744 8899999999999
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhh
Q 004296 634 SLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDG 675 (763)
Q Consensus 634 ~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 675 (763)
++.++..||..+. .+.+++|+.|+.+|+..++||..+++..
T Consensus 575 ~~~~~i~wl~~~~-~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 575 KCNEVINWLDKNQ-LAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHhhhcc-cccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 9999999999885 5569999999999999999999987654
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.4e-92 Score=811.64 Aligned_cols=578 Identities=26% Similarity=0.412 Sum_probs=517.0
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (763)
.+||||||||||+||++.+|.++++.|..|++.+||+|+|.+++++||..|..++.++|.++++++|||||+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 4799999999999999999999999999999999999999988899999999999999999999999999999876 34
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHH
Q 004296 82 KDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAAS 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~ 161 (763)
.....+||.+...++|.+.+.+.. ..++|+++++++|++|++.++.++|.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~----~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQ----GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecC----CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 455678999888778888777642 2689999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHH
Q 004296 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGY 241 (763)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~ 241 (763)
+|||++++||+||+|||++|++.. ..+.++||||+||||||+|++++.++.++|+++.|+.++||.+||..|++|
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDS-----GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999764 236799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHH
Q 004296 242 FAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKA 321 (763)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (763)
+.++|+ .+...+++++.+|+.+||++|+.||.+..+.+.+..+ ...|||++|+++|+|+++++..+++++
T Consensus 249 ~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 998764 4455688999999999999999999999888888532 235999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEecccceeEE
Q 004296 322 LADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSIGI 401 (763)
Q Consensus 322 l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~~i~i 401 (763)
|+++++.+.+|+.|+||||+||||+|++.|+++||..+..++|||+|||+|||++|+++++.++.+++.+.|++|++||+
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999877789999999999999999999998878899999999999999
Q ss_pred EecCCCcccCCCcceeeecCCCCcCceEEEEeee--cCceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCcceEEE
Q 004296 402 SSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQR--SSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKVKV 479 (763)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v 479 (763)
++.+ +.+.+|||+|+++|++++.+|++ +++..+.+.+..|+.....+|..||+|.|.++|+.+.+.++|+|
T Consensus 399 ~~~~-------g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v 471 (616)
T PRK05183 399 ETMG-------GLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRV 471 (616)
T ss_pred eecC-------CeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEE
Confidence 9875 46889999999999999888876 44455655544455544578999999999999998888889999
Q ss_pred EEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccccccce
Q 004296 480 TVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAGRR 559 (763)
Q Consensus 480 ~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 559 (763)
+|++|.+|+|+|++.+ +.+++.
T Consensus 472 ~f~~d~~Gil~V~a~~----------------------------------------------------------~~~~~~ 493 (616)
T PRK05183 472 TFQVDADGLLSVTAME----------------------------------------------------------KSTGVE 493 (616)
T ss_pred EEEECCCCeEEEEEEE----------------------------------------------------------cCCCcE
Confidence 9999999999999763 122333
Q ss_pred eeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 004296 560 LDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETE 639 (763)
Q Consensus 560 ~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~ 639 (763)
..+.+... .+|+.++++++.+.+.++...|+..+++.+++|++|+|+|.+++.+.+ ....+++++|+++...+++.+
T Consensus 494 ~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 570 (616)
T PRK05183 494 ASIQVKPS--YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA-DGDLLSAAERAAIDAAMAALR 570 (616)
T ss_pred EEeccccc--ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHH
Confidence 44555433 369999999999999999999999999999999999999999999964 346789999999999999999
Q ss_pred HHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhh
Q 004296 640 EWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (763)
Q Consensus 640 ~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (763)
+||..+ +...|++++++|++.+.++..+.
T Consensus 571 ~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 571 EVAQGD----DADAIEAAIKALDKATQEFAARR 599 (616)
T ss_pred HHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999753 67899999999999999998744
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.4e-93 Score=834.07 Aligned_cols=595 Identities=39% Similarity=0.661 Sum_probs=535.4
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHHHh
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQK 82 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~ 82 (763)
||||||||+||+||++.+++++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHH
Q 004296 83 DLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASI 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~ 162 (763)
+.+.+||.++..++|.+.+.+.+.|....++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHH
Q 004296 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYF 242 (763)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l 242 (763)
|||++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++++++.++..+||++||..|++|+
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~ 236 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYL 236 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccc
Confidence 9999999999999999999887642 588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCC--CCceeEEeecccC-CcceEEEecHHHHHHHHhhHHHHHHHHHH
Q 004296 243 AAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSA--NAEAPLNIECLMD-EKDVRGFIKREEFEELASGLTEKIAIPCR 319 (763)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~--~~~~~i~i~~l~~-~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (763)
.++|+.+++.++..+++++.+|+.+|+++|+.||. +.+..+.++++.+ |.++.+.|||++|+++|+|+++++..+|+
T Consensus 237 ~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 237 LEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccc
Confidence 99999999999999999999999999999999999 6777888888887 88999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccccee
Q 004296 320 KALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSI 399 (763)
Q Consensus 320 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~~i 399 (763)
++|+.++++..+|+.|+||||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecC----ceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCcc
Q 004296 400 GISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSS----LFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENA 475 (763)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~ 475 (763)
|+.+.+ +.+.+++++|+++|+.++..|.+.. .|.+.++|++... ..++..||+|.|.++++.+.+.+
T Consensus 397 ~i~~~~-------~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~--~~~~~~ig~~~i~~i~~~~~g~~ 467 (602)
T PF00012_consen 397 GIEVSN-------GKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSS--FEDNKKIGSYTISGIPPAPKGKP 467 (602)
T ss_dssp EEEETT-------TEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSB--GGGSEEEEEEEEES-SSSSTTSS
T ss_pred cccccc-------cccccccccccccccccccccchhccccccccceeeeccccc--ccccccccccccccccccccccc
Confidence 999986 4688999999999999887776532 4788887765433 36779999999999998888888
Q ss_pred eEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccc
Q 004296 476 KVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDK 555 (763)
Q Consensus 476 ~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 555 (763)
+|+|+|++|.+|+|+|+++++..
T Consensus 468 ~i~v~f~ld~~Gil~V~~~~~~~--------------------------------------------------------- 490 (602)
T PF00012_consen 468 KIKVTFELDENGILSVEAAEVET--------------------------------------------------------- 490 (602)
T ss_dssp EEEEEEEEETTSEEEEEEEETTT---------------------------------------------------------
T ss_pred ceeeEEeeeeeeehhhhhccccc---------------------------------------------------------
Confidence 99999999999999999985211
Q ss_pred ccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 004296 556 AGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSL 635 (763)
Q Consensus 556 ~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l 635 (763)
.....+.+.... .+++++++.+.+++.++...|+.++++.+++|.||+|+|++|+.|++. ..+++++++ .+++
T Consensus 491 -~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~-~~~~~~~~~---~~~l 563 (602)
T PF00012_consen 491 -GKEEEVTVKKKE--TLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED-KDFVSEEEK---KKKL 563 (602)
T ss_dssp -TEEEEEEEESSS--SSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGSTHHHH---HHHH
T ss_pred -cccccccccccc--ccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh-hccCCHHHH---HHHH
Confidence 111223343332 489999999999999999999999999999999999999999999876 677777777 8999
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhh
Q 004296 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (763)
Q Consensus 636 ~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (763)
+++.+||++++++++.++|++|+++|+++.+||..|++.
T Consensus 564 ~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 564 KETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988999999999999999999999999863
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-89 Score=713.31 Aligned_cols=590 Identities=29% Similarity=0.485 Sum_probs=538.3
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEc-CCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG-EKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
+|+|||+|||+||++++.++.+.++.|.+|.|.+||+|+|. ++++++|..|+.+...||.|+++.-||+||+.+++|.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 48999999999999999999999999999999999999995 55899999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
+.+++.+||+++..++|...++. .| ..++|.++.+++|.++++.|+.+++.++...|+|||+||++.||+++++|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999988776 34 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
++||++++++||||+|||++|++++. ....++|||+||||||++++.+.+|.++|.++.+|.++||.+||..+.+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k-----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKK-----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred hhccceeeccCCccchhHHhhccccc-----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 99999999999999999999999863 2678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCC----cceEEEecHHHHHHHHhhHHHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (763)
|+..+|+...++++..+++++.||++++|++|+.||...+..++++.+..| ..+++.+||.+||+++.+++.|.+.
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999988766 5688999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccc
Q 004296 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (763)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~ 396 (763)
++.++|++|++..+||+.|+|+||++|+|.+++.+++.||.......||||+||.|||++++.+++. ++++.+.|++|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVtp 416 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVTP 416 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 88999999999
Q ss_pred ceeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecC--c--eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCC
Q 004296 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSS--L--FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS 472 (763)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~--~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~ 472 (763)
+++||+.-+ +.+..|+++|+.||++++..|.+.. + ++|.+++ +++....+|.++|+|.+.|+||+++
T Consensus 417 LsLgietlg-------gvft~Li~rnttIptkksqvfstaadgqt~V~ikv~q--gere~~~dnk~lG~f~l~gipp~pR 487 (640)
T KOG0102|consen 417 LSLGIETLG-------GVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQ--GEREMVNDNKLLGSFILQGIPPAPR 487 (640)
T ss_pred HHHHHHhhh-------hhheecccCCcccCchhhhheeecccCCceEEEEeee--chhhhhccCcccceeeecccCCCCC
Confidence 999998876 4789999999999999999998744 3 4555544 4455568999999999999999999
Q ss_pred CcceEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccc
Q 004296 473 ENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVV 552 (763)
Q Consensus 473 ~~~~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (763)
+.++|.|+|.+|.+||++|++.+
T Consensus 488 gvpqieVtfDIdanGI~~vsA~d--------------------------------------------------------- 510 (640)
T KOG0102|consen 488 GVPQIEVTFDIDANGIGTVSAKD--------------------------------------------------------- 510 (640)
T ss_pred CCCceeEEEeecCCceeeeehhh---------------------------------------------------------
Confidence 99999999999999999998873
Q ss_pred cccccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 004296 553 RDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGIS 632 (763)
Q Consensus 553 ~k~~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~ 632 (763)
|.+.+..++++... ++||.++++.+.+..+.+...|+.++++.+..|..|+++|+....+.. |.+..+.++..+|.
T Consensus 511 -k~t~K~qsi~i~~s--ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~-~~~~~~~~~~~~i~ 586 (640)
T KOG0102|consen 511 -KGTGKSQSITIASS--GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE-FEEKIPAEECEKLE 586 (640)
T ss_pred -cccCCccceEEeec--CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh-hhhhCcHHHHHHHH
Confidence 22334445666554 479999999999999999999999999999999999999999988864 67778888888999
Q ss_pred HHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhh
Q 004296 633 RSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYK 673 (763)
Q Consensus 633 ~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~ 673 (763)
..+....+.+-.- ...+.+++..+...|++...|+..-++
T Consensus 587 ~~i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~es~~ 626 (640)
T KOG0102|consen 587 EKISDLRELVANK-DSGDMEEIKKAMSALQQASLKLFESAY 626 (640)
T ss_pred HHHHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 9999988888532 123337788888888887777765443
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8.7e-87 Score=756.18 Aligned_cols=552 Identities=22% Similarity=0.324 Sum_probs=469.7
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCC----
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGD---- 77 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~---- 77 (763)
.+||||||||||+||++.+++++++.|..|+|.+||+|+|.++++++|..| +++++||+||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 389999999999999999999999999999999999999998889999987 799999999999876
Q ss_pred HHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHH
Q 004296 78 PVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYL 157 (763)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~ 157 (763)
+.+....+. .....++.+. +...+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 90 ~~~~~~~k~----~~~~~~~~~~--~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSELK--LNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeecCCCeeE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 222221111 1112223333 33333 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHH
Q 004296 158 NAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDV 237 (763)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~ 237 (763)
+||++|||++++||+||+|||++|++... ...++||||+||||||+|++++.++.++|+++.|+.++||++||.+
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN-----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC-----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 99999999999999999999999997642 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHH
Q 004296 238 LFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIP 317 (763)
Q Consensus 238 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~ 317 (763)
|++|+..+|.. ..+.+ .+..||++|+.||.+..... ..+.|||++|+++|+|+++++..+
T Consensus 237 l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 237 ITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999987642 22222 23469999999998764321 167899999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEecccc
Q 004296 318 CRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPY 397 (763)
Q Consensus 318 i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~ 397 (763)
++++|++++ ..+|+.|+||||+||||+|++.|+++||.++..++|||+|||+|||++|+++++.+ +++.+.|++|+
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p~ 372 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVPL 372 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEeccc
Confidence 999999998 56899999999999999999999999998888899999999999999999998753 57899999999
Q ss_pred eeEEEecCCCcccCCCcceeeecCCCCcCceEEEEeeec--CceEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCcc
Q 004296 398 SIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENA 475 (763)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~ 475 (763)
+||+++.+ +.+.+||+||+++|++++..|++. ++..+.+.+.+|+.....+|..||+|.|.++++.+.|.+
T Consensus 373 slgi~~~~-------g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~ 445 (595)
T PRK01433 373 SLGMELYG-------GIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445 (595)
T ss_pred ceEEEecC-------CEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCc
Confidence 99999986 478899999999999988888763 444444433334444457899999999999999888888
Q ss_pred eEEEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccc
Q 004296 476 KVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDK 555 (763)
Q Consensus 476 ~i~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 555 (763)
+|+|+|++|.||+|+|++.+ +.
T Consensus 446 ~i~vtf~id~~Gil~V~a~~----------------------------------------------------------~~ 467 (595)
T PRK01433 446 RAEVTFAIDADGILSVSAYE----------------------------------------------------------KI 467 (595)
T ss_pred cEEEEEEECCCCcEEEEEEE----------------------------------------------------------cC
Confidence 99999999999999999874 23
Q ss_pred ccceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 004296 556 AGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSL 635 (763)
Q Consensus 556 ~~~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l 635 (763)
++++..+.|... .+|++++++++.++..++...|..++++.+++|.+|+++|.++..+++ +...+++++|+.+...+
T Consensus 468 t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~~~~ 544 (595)
T PRK01433 468 SNTSHAIEVKPN--HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE-LTTLLSESEISIINSLL 544 (595)
T ss_pred CCcEEEEEecCC--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHH
Confidence 344455666543 359999999999999999999999999999999999999999999975 55668999999999999
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHhchhh-HHHhh
Q 004296 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDP-IENRY 672 (763)
Q Consensus 636 ~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~p-i~~R~ 672 (763)
++.++||..+ +...+.+++++|+....+ +..|.
T Consensus 545 ~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 578 (595)
T PRK01433 545 DNIKEAVHAR----DIILINNSIKEFKSKIKKSMDTKL 578 (595)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999743 556777777777777777 44443
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-85 Score=742.23 Aligned_cols=569 Identities=30% Similarity=0.463 Sum_probs=519.9
Q ss_pred eEEEEEccccceEEEEEeCC-ceEEEeCCCCCccceeEEEEcCCc-eEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHH
Q 004296 2 SVVGFDIGNENCVIATVKHR-GVDVLLNEESNRETPSIVCFGEKQ-RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~-~~~ii~n~~~~r~~ps~v~~~~~~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (763)
.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..++ +++|..|+.++..+|.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 38999999999999999988 799999999999999999999765 9999999999999999999999999998721
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 004296 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (763)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 159 (763)
+. .+.+...| +.++|+++++++|.++++.++.+++..+.++|||||+||++.||+++++|
T Consensus 83 -----------------~~-~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------GL-KISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------CC-cceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 11 11122233 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 004296 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (763)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~ 239 (763)
+++|||++++|++||+|||++|+.... .+..|||||+||||||+|++++..|.++|+++.|+.++||++||.+|.
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998763 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHH
Q 004296 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCR 319 (763)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (763)
+|+..+|+.++++++..+++++.||+.+|+++|+.||.+.++.++++.+..+.++...|+|++||.++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCCccccceEEEeccccee
Q 004296 320 KALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSI 399 (763)
Q Consensus 320 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~~~~~~~~~~d~~~~~i 399 (763)
++|.+++++..+|+.|+||||++|||.|++.++++||.++...+|||++||.|||++|+.+++..+ ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998755 899999999999
Q ss_pred EEEecCCCcccCCCcceeeecCCCCcCceEEEEeeecCc--eEEEEEEeCCCCCCCCCCcceeEEEECCCCCCCCCcceE
Q 004296 400 GISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL--FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKV 477 (763)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 477 (763)
|+++.+ +.+..++++|+.+|.++...|.+..| -.+.+.+..++.....+|..+|.|.+.++++.+.+.+.|
T Consensus 376 gie~~~-------~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i 448 (579)
T COG0443 376 GIETLG-------GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQI 448 (579)
T ss_pred ccccCc-------chhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCce
Confidence 999886 47889999999999999988877544 455555556666556899999999999999999999999
Q ss_pred EEEEEEcCCccEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccccc
Q 004296 478 KVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAG 557 (763)
Q Consensus 478 ~v~~~~d~~gil~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 557 (763)
.|+|.+|.||+++|++.+ +.++
T Consensus 449 ~v~f~iD~~gi~~v~a~~----------------------------------------------------------~~~~ 470 (579)
T COG0443 449 EVTFDIDANGILNVTAKD----------------------------------------------------------LGTG 470 (579)
T ss_pred EEEeccCCCcceEeeeec----------------------------------------------------------ccCC
Confidence 999999999999998853 2334
Q ss_pred ceeeEEEeeeccCCCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 004296 558 RRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQE 637 (763)
Q Consensus 558 ~~~~l~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e 637 (763)
+...+.|.... + |++++++.+.+....+.+.|+..++..+.+|.+++++|.++..|.+.. .+++++++++.+.+.+
T Consensus 471 k~~~i~i~~~~-~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 546 (579)
T COG0443 471 KEQSITIKASS-G-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV--KVSEEEKEKIEEAITD 546 (579)
T ss_pred ceEEEEEecCC-C-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cCCHHHHHHHHHHHHH
Confidence 55667777665 4 999999999999999999999999999999999999999999997644 8999999999999999
Q ss_pred HHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhh
Q 004296 638 TEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (763)
Q Consensus 638 ~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (763)
+++||+.+ ..++..+.++|+....++..++++
T Consensus 547 ~~~~l~~~-----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 547 LEEALEGE-----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999982 889999999999999998887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=2.4e-55 Score=482.27 Aligned_cols=337 Identities=23% Similarity=0.309 Sum_probs=289.3
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEc----------------------------------------
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG---------------------------------------- 42 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~---------------------------------------- 42 (763)
++|||||||||+||++.++.++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceEEcHhHHHhHhhCCcch--HHHHHHhhCCCCCCHHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHH
Q 004296 43 -EKQRFIGAAGYASAMMHPKST--VSQVKRLIGRRYGDPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMG 119 (763)
Q Consensus 43 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a 119 (763)
++..++|..|..++..+|.++ +..+|++||...-. .+ ....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------~~------------~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------PQ------------QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------cc------------ceeCHHHHHH
Confidence 345689999999999999998 77999999965311 01 1234899999
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEEecCCCC-----HHHHHH---HHHHHHHcCCceeeeecchHHHHHhhhccccCCCCC
Q 004296 120 MLFSHLKDVAEKNLEMPVVDCVIGVPSYFT-----DLQRRE---YLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANG 191 (763)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVP~~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 191 (763)
++|++|++.++.++|.++.++|||||++|+ +.||++ |++||+.||+++++|++||+|||++|+... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~-----~ 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL-----T 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc-----C
Confidence 999999999999999999999999999998 778766 799999999999999999999999998643 3
Q ss_pred CcceEEEEEeCCceeEEEEEEEeCC-------eEEEEEEeCCCCCchHHHHHHHH-HHHHHHHHh----hhcccc-----
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFEAG-------HMKVLSHAFDSSLGGRDFDDVLF-GYFAAKFKE----QYKINV----- 254 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~~-------~~~vl~~~~~~~lGG~~~D~~l~-~~l~~~~~~----~~~~~~----- 254 (763)
.+..+|||||||||+|+|++++.++ ..+|+++.| ..+||++||..|+ +++...|.. +++.++
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~ 285 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPF 285 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhh
Confidence 5789999999999999999999754 368999997 6899999999998 678877752 111110
Q ss_pred ------------------------------cccHHHH------------HHHHHHHHHHhhhcCCCCceeEEeecccCCc
Q 004296 255 ------------------------------YSNVRAC------------IRLRAACEKLKKVLSANAEAPLNIECLMDEK 292 (763)
Q Consensus 255 ------------------------------~~~~~~~------------~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~ 292 (763)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+. .
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~ 363 (450)
T PRK11678 286 WNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--D 363 (450)
T ss_pred hhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--C
Confidence 1133333 4788999999999999999999998764 4
Q ss_pred ceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcc
Q 004296 293 DVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARG 372 (763)
Q Consensus 293 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~G 372 (763)
++...|||++|+++++++++++..+++++|+.+++. ++.|+||||+||||.|++.|.+.||.......+|.++||.|
T Consensus 364 ~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G 440 (450)
T PRK11678 364 GLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG 440 (450)
T ss_pred CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence 578899999999999999999999999999999976 47899999999999999999999986555677999999999
Q ss_pred hHHhhhhh
Q 004296 373 CALQCAML 380 (763)
Q Consensus 373 aa~~a~~~ 380 (763)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.2e-38 Score=342.95 Aligned_cols=307 Identities=21% Similarity=0.296 Sum_probs=233.8
Q ss_pred EEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCC--c-eEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHHH
Q 004296 4 VGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK--Q-RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (763)
Q Consensus 4 vGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (763)
+||||||++|+|+.. +...++. +||+|+|... . ..+|.+|.....+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 799999999999885 3223332 5999999953 2 36899996554444333210
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 004296 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa 160 (763)
..| ..+|. +...+....+++++.+.+..........+|||||++|+..||+++.+|+
T Consensus 62 -----~~p-----i~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 -----IRP-----LRDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -----Ecc-----CCCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 011 11232 2222455666666665443222223457999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
+.||++.+.+++||+|||++|+... ..+..++|||+||||||+++++... ++ ..++.++||++||..|++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~ 188 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDI-----SQPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIR 188 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHH
Confidence 9999999999999999999998743 3467799999999999999998752 22 345789999999999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC----ceeEEee--cccCCcceEEEecHHHHHHHHhhHHHHH
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----EAPLNIE--CLMDEKDVRGFIKREEFEELASGLTEKI 314 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~efe~l~~~~~~~i 314 (763)
++..+|. .... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.++++++
T Consensus 189 ~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i 255 (336)
T PRK13928 189 YIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAI 255 (336)
T ss_pred HHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHH
Confidence 9987654 2221 257999999886431 1233332 2345567789999999999999999999
Q ss_pred HHHHHHHHHHcC--CCCCCcc-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhh
Q 004296 315 AIPCRKALADAG--LHVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAML 380 (763)
Q Consensus 315 ~~~i~~~l~~~~--~~~~~i~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~ 380 (763)
...|.+.|+.++ +..+.++ .|+|+||+|++|.|++++++.|+.++....||++|||+|||+++..+
T Consensus 256 ~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 256 VQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999986 4456677 79999999999999999999999988888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=5.6e-38 Score=336.60 Aligned_cols=305 Identities=23% Similarity=0.310 Sum_probs=240.6
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCc---eEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHH
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQ---RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (763)
.|||||||+++++ +.++.. ++.|+ ||+|+|+.+. ..+|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------~------ 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------R------ 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------e------
Confidence 5899999999986 334432 45564 9999998543 479999988777777654321 0
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcc--eEEEEecCCCCHHHHHHHH
Q 004296 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVV--DCVIGVPSYFTDLQRREYL 157 (763)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~--~~VitVP~~~~~~qr~~l~ 157 (763)
|. .+|.+ .++ ++++.+|++++..++..++..+. .+|||||++|+..||+++.
T Consensus 65 --------pi-----~~G~I------------~d~-d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 --------PM-----KDGVI------------ADY-DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred --------cC-----CCCcc------------CCH-HHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 11 12321 122 68899999999988777775553 7999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHH
Q 004296 158 NAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDV 237 (763)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~ 237 (763)
+|++.||++++.+++||+|||++|+... ..+..++|||+||||||++++.+.+ ++ ..++..+||++||..
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~ 188 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPV-----DEPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCc-----CCCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHH
Confidence 9999999999999999999999997643 4467899999999999999998753 22 344678999999999
Q ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC----ceeEEee--cccCCcceEEEecHHHHHHHHhhHH
Q 004296 238 LFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----EAPLNIE--CLMDEKDVRGFIKREEFEELASGLT 311 (763)
Q Consensus 238 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~efe~l~~~~~ 311 (763)
|.+++...+ +.... ...||++|+.++... ...+.+. .+..+.+..+.|++++|+++|.+++
T Consensus 189 l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 999998654 33221 168999999997632 2223332 2334556788999999999999999
Q ss_pred HHHHHHHHHHHHHcCC--CCCCcc-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhh
Q 004296 312 EKIAIPCRKALADAGL--HVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (763)
Q Consensus 312 ~~i~~~i~~~l~~~~~--~~~~i~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 377 (763)
.++...|.+.|+.++. ..+.++ .|+|+||+|++|.+.+++++.||.++....||+++|++||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999999999999854 345677 69999999999999999999999998888999999999999764
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2e-35 Score=318.50 Aligned_cols=305 Identities=23% Similarity=0.355 Sum_probs=227.0
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCC-ce--EEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHH
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-QR--FIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~-~~--~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (763)
.|||||||++++++... .+. ++ .+||+|+|... +. ++|++|..+..+.|.++..
T Consensus 7 ~igIDlGt~~~~i~~~~-~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~-------------- 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVKG-KGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA-------------- 63 (334)
T ss_pred eeEEEcCcceEEEEECC-CcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--------------
Confidence 58999999999985532 232 32 26999999754 33 7999997666555433210
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCceeeec-HHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 004296 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFC-PVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (763)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~ 158 (763)
..|. .+|.+ ..+. .++++..++.++... .. ....+|||||++|+..+|++++.
T Consensus 64 ------~~pi-----~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 64 ------IRPM-----KDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred ------EecC-----CCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 0111 12321 1121 244444444443322 21 12479999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 004296 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (763)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l 238 (763)
|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+- . ..++.++||++||+.|
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~l 187 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPV-----TEPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEAI 187 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHHH
Confidence 999999999999999999999998643 34567899999999999999987631 1 2346789999999999
Q ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCc----eeEEe--ecccCCcceEEEecHHHHHHHHhhHHH
Q 004296 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE----APLNI--ECLMDEKDVRGFIKREEFEELASGLTE 312 (763)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~itr~efe~l~~~~~~ 312 (763)
.+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+.
T Consensus 188 ~~~l~~~~~----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 188 INYVRRNYN----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHHHhC----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 999986553 2221 1578999999875322 22333 233455667889999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CCCcc-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 313 KIAIPCRKALADAGLH--VDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 313 ~i~~~i~~~l~~~~~~--~~~i~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
++..+|.++|+.++.. .+.++ .|+|+||+|++|.++++|++.|+.++....||+++||+||++++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999999998643 22334 5999999999999999999999988988899999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2e-34 Score=310.06 Aligned_cols=305 Identities=22% Similarity=0.330 Sum_probs=223.5
Q ss_pred EEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCC-----c--eEEcHhHHHhHhhCCcchHHHHHHhhCCCCC
Q 004296 4 VGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-----Q--RFIGAAGYASAMMHPKSTVSQVKRLIGRRYG 76 (763)
Q Consensus 4 vGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 76 (763)
|||||||+||+++... .+. ++ .+||+|+|..+ + ..+|++|.....+.|.+.-
T Consensus 5 ~giDlGt~~s~i~~~~-~~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~------------ 63 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RGI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV------------ 63 (333)
T ss_pred eEEecCcceEEEEECC-CCE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE------------
Confidence 8999999999998853 332 32 36999999743 3 5699999655444333221
Q ss_pred CHHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeec-HHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHH
Q 004296 77 DPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFC-PVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRRE 155 (763)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~ 155 (763)
+ ..| ..+|.+ ..+. .++++..++..+.... +.....+|+|||++|+..+|++
T Consensus 64 ---~-----~~p-----i~~G~i----------~d~~~~~~~~~~~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 64 ---A-----IRP-----MKDGVI----------ADFEVTEKMIKYFIKQVHSRK----SFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred ---E-----Eec-----CCCCEE----------EcHHHHHHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCHHHHHH
Confidence 0 011 113321 1121 2345555554443221 1122389999999999999999
Q ss_pred HHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHH
Q 004296 156 YLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFD 235 (763)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D 235 (763)
+.+|++.+|++++.+++||+|||++|+... ..+..++|||+||||||++++++.+- . ..++.++||++||
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lVvDiG~gttdvs~v~~~~~----~-~~~~~~lGG~did 186 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPV-----EEPTGSMVVDIGGGTTEVAVISLGGI----V-VSRSIRVGGDEFD 186 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCcc-----cCCceEEEEEcCCCeEEEEEEEeCCE----E-ecCCccchHHHHH
Confidence 999999999999999999999999998632 34678999999999999999987631 1 2346789999999
Q ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCc-----eeEEeec--ccCCcceEEEecHHHHHHHHh
Q 004296 236 DVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE-----APLNIEC--LMDEKDVRGFIKREEFEELAS 308 (763)
Q Consensus 236 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-----~~i~i~~--l~~~~d~~~~itr~efe~l~~ 308 (763)
+.|++++..++. .... +..||++|+.++.... ..+.+.. ...+......|++++|.+++.
T Consensus 187 ~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~ 253 (333)
T TIGR00904 187 EAIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQ 253 (333)
T ss_pred HHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHH
Confidence 999999986542 2221 2679999999975322 1222221 112334567899999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCCC-CCc-c-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 309 GLTEKIAIPCRKALADAGLHV-DKI-H-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~-~~i-~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
+.+.++...+.+.|+.++... .++ + .|+|+||+|++|.++++|++.||.++....||+++||.||++++..
T Consensus 254 ~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 254 EPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999976432 244 3 7999999999999999999999999988999999999999998654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1e-33 Score=305.79 Aligned_cols=308 Identities=22% Similarity=0.314 Sum_probs=229.2
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC-C--ceEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHH
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-K--QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~-~--~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (763)
.+||||||+++++++..+ ++ ++ .+||+|++.. . ..++|.+|.....+.|.+.-.
T Consensus 10 ~vgiDlGt~~t~i~~~~~-~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~-------------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK-GI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA-------------- 66 (335)
T ss_pred ceEEEcCCCcEEEEECCC-CE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--------------
Confidence 389999999999988633 32 22 2599999975 2 248999997655444322100
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 004296 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (763)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 159 (763)
..|+ .+|.+ .+ -+.+..+++++.+.+..........+|||+|++|+..+|+++.+|
T Consensus 67 ------~~pi-----~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 67 ------IRPL-----KDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ------eecC-----CCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0111 13322 11 133556666666544333334467899999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 004296 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (763)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~ 239 (763)
++.+|++++.+++||+|||++|+... ..+..++|||+||||||++++.... ++. .+..++||.+||+.|.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~-----~~~~~~lVvDiG~gttdvs~v~~g~----~~~-~~~~~lGG~~id~~l~ 192 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPV-----TEPVGNMVVDIGGGTTEVAVISLGG----IVY-SESIRVAGDEMDEAIV 192 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCc-----CCCCceEEEEeCCCeEEEEEEEeCC----EEe-ecCcCchhHHHHHHHH
Confidence 99999999999999999999987643 2345689999999999999997653 222 4578999999999999
Q ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCc----eeEEee--cccCCcceEEEecHHHHHHHHhhHHHH
Q 004296 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE----APLNIE--CLMDEKDVRGFIKREEFEELASGLTEK 313 (763)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~----~~i~i~--~l~~~~d~~~~itr~efe~l~~~~~~~ 313 (763)
+++.+++ +.+.. ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.+++
T Consensus 193 ~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 259 (335)
T PRK13930 193 QYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQ 259 (335)
T ss_pred HHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHH
Confidence 9998754 33222 1578999999975432 123332 223344567899999999999999999
Q ss_pred HHHHHHHHHHHcCCC--CCCcc-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhh
Q 004296 314 IAIPCRKALADAGLH--VDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAML 380 (763)
Q Consensus 314 i~~~i~~~l~~~~~~--~~~i~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~ 380 (763)
+...+.++|+.+... .+.++ .|+|+||+|++|+++++|++.|+.++....+|+++||+||++.+...
T Consensus 260 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 260 IVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999987532 23345 49999999999999999999999888888899999999999998653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.98 E-value=1.4e-31 Score=279.60 Aligned_cols=306 Identities=24% Similarity=0.355 Sum_probs=216.2
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCc---eEEcHhHHHhHhhCCcchHHHHHHhhCCCCCCHH
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQ---RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (763)
-|||||||+++.|+. .+.+ ++.++ ||+|+++.+. ..+|.+|. .++|+...+-.
T Consensus 3 ~igIDLGT~~t~i~~-~~~G--iv~~e------pSvVA~~~~~~~i~avG~~A~---------------~m~gktp~~i~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG--IVLNE------PSVVAYDKDTGKILAVGDEAK---------------AMLGKTPDNIE 58 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE--EEEEE------ES-EEEETTT--EEEESHHHH---------------TTTTS-GTTEE
T ss_pred ceEEecCcccEEEEE-CCCC--EEEec------CcEEEEECCCCeEEEEhHHHH---------------HHhhcCCCccE
Confidence 489999999999855 3334 55555 9999998653 35899995 44554432211
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 004296 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (763)
Q Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~A 159 (763)
+ ..| ..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-|+.+|+++.+|
T Consensus 59 ~-----~~P-----l~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 V-----VRP-----LKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp E-----E-S-----EETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred E-----Ecc-----ccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 0 111 123432 11245666677766665443233456799999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 004296 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (763)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~ 239 (763)
+..+|.+.+.||.||.|||+..++.- ..+...+|+|+||||||++++... . ++.+. ...+||++||+.|.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislg--g--iv~s~-si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLG--G--IVASR-SIRIGGDDIDEAII 185 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETT--E--EEEEE-EES-SHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECC--C--EEEEE-EEEecCcchhHHHH
Confidence 99999999999999999999988643 557899999999999999999754 2 33333 46899999999999
Q ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC----ceeEEee--cccCCcceEEEecHHHHHHHHhhHHHH
Q 004296 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----EAPLNIE--CLMDEKDVRGFIKREEFEELASGLTEK 313 (763)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~efe~l~~~~~~~ 313 (763)
+|+.+++ ++.+.. ..||++|+.++.-. ...+.+. .+..+...++.|+-+++.++|.+.+.+
T Consensus 186 ~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 9998765 444444 78999999986432 1234443 346777889999999999999999999
Q ss_pred HHHHHHHHHHHcCCC-CCCc--cEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhh
Q 004296 314 IAIPCRKALADAGLH-VDKI--HSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCA 378 (763)
Q Consensus 314 i~~~i~~~l~~~~~~-~~~i--~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~ 378 (763)
|...|.++|+...-. ..|| ++|+|+||+|+++++.++|++.+|.++...-||..|||.||.....
T Consensus 253 I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 253 IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999974211 0133 5799999999999999999999999999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=6.3e-29 Score=248.16 Aligned_cols=309 Identities=27% Similarity=0.386 Sum_probs=241.1
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC--Cc---eEEcHhHHHhHhhCCcchHHHHHHhhCCCCCC
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE--KQ---RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGD 77 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~--~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 77 (763)
.||||+||.|+.|+.- +.+ +++|+ ||+|++.. +. ..+|.+| |+++|+...+
T Consensus 8 diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~n 63 (342)
T COG1077 8 DIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPGN 63 (342)
T ss_pred cceeeecccceEEEEc-Cce--EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCCC
Confidence 5899999999999774 333 77777 99999987 32 2689999 6778887655
Q ss_pred HHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcC-CCcceEEEEecCCCCHHHHHHH
Q 004296 78 PVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLE-MPVVDCVIGVPSYFTDLQRREY 156 (763)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~-~~~~~~VitVP~~~~~~qr~~l 156 (763)
-. .+.+..+|.+ .--++...+|+|+.+.+....+ .....+++.||..-++.+|+++
T Consensus 64 i~----------aiRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi 120 (342)
T COG1077 64 IV----------AIRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAI 120 (342)
T ss_pred ce----------EEeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHH
Confidence 21 1334445543 1224555666777766543222 3455799999999999999999
Q ss_pred HHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHH
Q 004296 157 LNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDD 236 (763)
Q Consensus 157 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~ 236 (763)
++|++.||.+.+.++.||.|||+..++ |...+..-+|||+||||||++++.+.+ +.... ...+||+.||+
T Consensus 121 ~ea~~~aGa~~V~lieEp~aAAIGagl-----pi~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~De 190 (342)
T COG1077 121 KEAAESAGAREVYLIEEPMAAAIGAGL-----PIMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKMDE 190 (342)
T ss_pred HHHHHhccCceEEEeccHHHHHhcCCC-----cccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchhhH
Confidence 999999999999999999999998765 445677889999999999999998874 33332 46799999999
Q ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC--------ceeEEeecccCCcceEEEecHHHHHHHHh
Q 004296 237 VLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA--------EAPLNIECLMDEKDVRGFIKREEFEELAS 308 (763)
Q Consensus 237 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~--------~~~i~i~~l~~~~d~~~~itr~efe~l~~ 308 (763)
.|.+|+.++| ++-+-+ ..||++|......- +..+.-.++..+..-.+.++-++..+.++
T Consensus 191 ~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~ 257 (342)
T COG1077 191 AIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALE 257 (342)
T ss_pred HHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHH
Confidence 9999998765 444444 56899998874321 12344445666777789999999999999
Q ss_pred hHHHHHHHHHHHHHHHc--CCCCCCcc-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhC
Q 004296 309 GLTEKIAIPCRKALADA--GLHVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLS 381 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~--~~~~~~i~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s 381 (763)
+.+++|.+.++..|+.. .+..+-++ .++|+||+|.+..+.+.|++..+.++....+|-.|||.|+......+.
T Consensus 258 ~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 258 EPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999985 33333344 499999999999999999999999999999999999999998777654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=1.2e-28 Score=250.35 Aligned_cols=200 Identities=21% Similarity=0.280 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcc
Q 004296 115 VQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (763)
Q Consensus 115 ~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (763)
-+..+++|+++++.++..++.++.++|||||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 3578899999999998888988999999999999999999999999999999999999999999988642
Q ss_pred eEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhh
Q 004296 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (763)
Q Consensus 195 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 274 (763)
..+|+|+||||||+++++. |. ++.+ .+.++||++||+.|++.+ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~--i~~~-~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GK--VIYS-ADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--Ce--EEEE-EeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999754 43 3333 367899999999887544 2322 689999987
Q ss_pred cCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhh
Q 004296 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSL 354 (763)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~ 354 (763)
++. .+++.+++.++++++...+++.|+.. .++.|+|+||+|++|++++.+++.
T Consensus 165 ~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 541 45677899999999999999999865 457899999999999999999999
Q ss_pred cCCCCccCCCchhHHhcchHH
Q 004296 355 FGREPRRSLNASECVARGCAL 375 (763)
Q Consensus 355 fg~~~~~~~n~~eava~Gaa~ 375 (763)
||.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999998999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=1.3e-26 Score=239.77 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcc
Q 004296 115 VQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (763)
Q Consensus 115 ~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (763)
-+.....|+++++.++..++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4456678888899998888888999999999999999999999999999999999999999999877531
Q ss_pred eEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhh
Q 004296 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (763)
Q Consensus 195 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 274 (763)
..+++|||||||+++++. +|.+ +.+ ++.++||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 258999999999999975 4433 333 4789999999999997752 22 2678999976
Q ss_pred cCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhh
Q 004296 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSL 354 (763)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~ 354 (763)
++ +++++.++++++++++...+++.++.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999864 578999999999999999999999
Q ss_pred cCCCCccCCCchhHHhcchHHhh
Q 004296 355 FGREPRRSLNASECVARGCALQC 377 (763)
Q Consensus 355 fg~~~~~~~n~~eava~Gaa~~a 377 (763)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999889999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=1.6e-22 Score=221.00 Aligned_cols=194 Identities=16% Similarity=0.268 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCc
Q 004296 151 LQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLG 230 (763)
Q Consensus 151 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lG 230 (763)
...+.+.+|++.||+++..++.||.|+|++|.... .....++++|+||||||++++. .|.+.. ....++|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeeecch
Confidence 45677888999999999999999999999885322 3456899999999999999986 343321 2357899
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCC------CceeEEeecccCCcceEEEecHHHHH
Q 004296 231 GRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN------AEAPLNIECLMDEKDVRGFIKREEFE 304 (763)
Q Consensus 231 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~efe 304 (763)
|++||+.|.+.+. . .+.+||++|+.++.. ....+.++.+. .+....|+|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHH
Confidence 9999999876541 1 137899999999753 23456666543 3567899999999
Q ss_pred HHHhhHHHHHHHHHH-HHHHHcCCCCCCccE-EEEecCCCChHHHHHHHHhhcCCCCccC------------CCchhHHh
Q 004296 305 ELASGLTEKIAIPCR-KALADAGLHVDKIHS-VEIVGSGSRIPAITRLLTSLFGREPRRS------------LNASECVA 370 (763)
Q Consensus 305 ~l~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-V~lvGG~srip~v~~~l~~~fg~~~~~~------------~n~~eava 370 (763)
+++.+.++++...+. +.|+.++.. .+++. |+|+||+|++|.+++.+++.||.++... -+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999999876 57776 9999999999999999999998654211 26777888
Q ss_pred cchHHh
Q 004296 371 RGCALQ 376 (763)
Q Consensus 371 ~Gaa~~ 376 (763)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 887754
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.89 E-value=2.5e-21 Score=213.77 Aligned_cols=196 Identities=13% Similarity=0.168 Sum_probs=149.9
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchH
Q 004296 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGR 232 (763)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~ 232 (763)
.+.+..|++.|||++..++.||.|+|.+++... ++...++++||||||||++++. +|.+. +....++||+
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~ 237 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGN 237 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHH
Confidence 344567999999999999999999999885432 4567899999999999999986 44332 2335789999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCC------CCceeEEeecccCCcceEEEecHHHHHHH
Q 004296 233 DFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSA------NAEAPLNIECLMDEKDVRGFIKREEFEEL 306 (763)
Q Consensus 233 ~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~------~~~~~i~i~~l~~~~d~~~~itr~efe~l 306 (763)
+|++.|+..|. ++ +..||++|+.+.. .....+.++.+.+.. ...++|.+|.++
T Consensus 238 ~it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~i 296 (420)
T PRK09472 238 VVTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEV 296 (420)
T ss_pred HHHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHH
Confidence 99999986552 21 2689999976532 123456666543322 248899999999
Q ss_pred HhhHHHHHHHHHHH-------HHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCcc------------CCCchh
Q 004296 307 ASGLTEKIAIPCRK-------ALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRR------------SLNASE 367 (763)
Q Consensus 307 ~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~------------~~n~~e 367 (763)
+.+.++++...+.+ .|..+++....++.|+|+||+|++|+|++++++.|+.++.. ..+|..
T Consensus 297 i~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 297 IEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHH
Confidence 99977777776655 45667887778999999999999999999999999855422 247999
Q ss_pred HHhcchHHhhhh
Q 004296 368 CVARGCALQCAM 379 (763)
Q Consensus 368 ava~Gaa~~a~~ 379 (763)
|+|.|.++++..
T Consensus 377 ata~Gl~~~~~~ 388 (420)
T PRK09472 377 STAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.80 E-value=9.7e-18 Score=179.89 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=160.0
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchH
Q 004296 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGR 232 (763)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~ 232 (763)
-+.|.+|++.+||++..++-+|.|+|.+.... +++.-.++++||||||||++++.-. . +. +.+..++||+
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~-----dEkelGv~lIDiG~GTTdIai~~~G--~--l~-~~~~ipvgG~ 236 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTE-----DEKELGVALIDIGGGTTDIAIYKNG--A--LR-YTGVIPVGGD 236 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCc-----ccHhcCeEEEEeCCCcEEEEEEECC--E--EE-EEeeEeeCcc
Confidence 46788999999999999999999999876543 2667899999999999999998644 3 33 3346799999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCC------CceeEEeecccCCcceEEEecHHHHHHH
Q 004296 233 DFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN------AEAPLNIECLMDEKDVRGFIKREEFEEL 306 (763)
Q Consensus 233 ~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~efe~l 306 (763)
+++..|+.-|.-.| ..||++|...... ....+.++...++. ...++|..+.++
T Consensus 237 ~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~I 295 (418)
T COG0849 237 HVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEI 295 (418)
T ss_pred HHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHH
Confidence 99999997764222 6899999988432 23457777664443 678999999999
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCc--c----------CCCchhHHhcchH
Q 004296 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPR--R----------SLNASECVARGCA 374 (763)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~--~----------~~n~~eava~Gaa 374 (763)
+++.+.++..+++..|+++++...-...|+|+||++.+|++.+..++.|+.++. . ..+|..+.|.|..
T Consensus 296 I~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~ 375 (418)
T COG0849 296 IEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLL 375 (418)
T ss_pred HHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHH
Confidence 999999999999999999999866778999999999999999999999975431 1 2367889999999
Q ss_pred Hhhhhh
Q 004296 375 LQCAML 380 (763)
Q Consensus 375 ~~a~~~ 380 (763)
++++..
T Consensus 376 ~~~~~~ 381 (418)
T COG0849 376 LYGALM 381 (418)
T ss_pred HHHhhc
Confidence 888754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.66 E-value=3.3e-15 Score=163.75 Aligned_cols=301 Identities=17% Similarity=0.131 Sum_probs=186.6
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcC----------CceEEcHhHHHhHhhCCcchHHHHHHhhC
Q 004296 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE----------KQRFIGAAGYASAMMHPKSTVSQVKRLIG 72 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~llg 72 (763)
+|.||+||.++++++..++.+..+ +||+++... ...++|++|.... +
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 57 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR---------------G 57 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCC---------------C
Confidence 378999999999999866633322 366666542 2346787764221 1
Q ss_pred CCCCCHHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHH
Q 004296 73 RRYGDPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQ 152 (763)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~q 152 (763)
. + ..-..|+ .+|.+ ... +.+..+++++....- .....-..+++++|..++..+
T Consensus 58 ~---~-----~~~~~P~-----~~G~i------------~d~-~~~e~~~~~~~~~~l-~~~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 58 L---G-----LELIYPI-----EHGIV------------VDW-DDMEKIWDHLFFNEL-KVNPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred C---c-----eEEcccc-----cCCEE------------eCH-HHHHHHHHHHHHHhc-CCCCCCCceEEecCCCCCHHH
Confidence 0 0 0001121 13322 122 233455555543211 111224579999999999888
Q ss_pred HHHHHHH-HHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCch
Q 004296 153 RREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (763)
Q Consensus 153 r~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 231 (763)
|+.+.+. .+..|++.+.+++++.+|+++++. .+.+|||+|+++|+++.+. +|.. +.......++||
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG 177 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAG 177 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------CeEEEEECCCCeeEEEEEE--CCEE-chhhheeccccH
Confidence 8888775 677899999999999999988763 5789999999999998875 3332 222233568999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCce---e----------EE-eecccCCcceEEE
Q 004296 232 RDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEA---P----------LN-IECLMDEKDVRGF 297 (763)
Q Consensus 232 ~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~---~----------i~-i~~l~~~~d~~~~ 297 (763)
.++|+.|.+++..... ..+.. .-...++.+|+.+..-... . .. .-.+.++ ..+.
T Consensus 178 ~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~ 245 (371)
T cd00012 178 RDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIK 245 (371)
T ss_pred HHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEEE
Confidence 9999999998865321 11111 1124466666665321100 0 00 0111122 2455
Q ss_pred ecHHHHHHHHhhHH---------HHHHHHHHHHHHHcCC--CCCCccEEEEecCCCChHHHHHHHHhhcCC---------
Q 004296 298 IKREEFEELASGLT---------EKIAIPCRKALADAGL--HVDKIHSVEIVGSGSRIPAITRLLTSLFGR--------- 357 (763)
Q Consensus 298 itr~efe~l~~~~~---------~~i~~~i~~~l~~~~~--~~~~i~~V~lvGG~srip~v~~~l~~~fg~--------- 357 (763)
++.+.| .+++.++ ..+...|.+++..... ...-++.|+|+||+|++|.+.++|.+.++.
T Consensus 246 ~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~ 324 (371)
T cd00012 246 VGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTK 324 (371)
T ss_pred EChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceE
Confidence 665443 2333333 3677888888877532 233357899999999999999999988851
Q ss_pred -CCccCCCchhHHhcchHHhhhh
Q 004296 358 -EPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 358 -~~~~~~n~~eava~Gaa~~a~~ 379 (763)
.+....+|..++-+||+++|..
T Consensus 325 ~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 325 VKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEccCCCccccEEeCchhhcCc
Confidence 1234567889999999999865
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.63 E-value=7.5e-16 Score=142.81 Aligned_cols=196 Identities=26% Similarity=0.306 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEE
Q 004296 120 MLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFV 199 (763)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~ 199 (763)
.+.+++++.+++++|..+....-++|+.-.+...+...+..+.||+.++..++||||||.-.++ ..-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l----------~dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL----------DDGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc----------CCCcEE
Confidence 5677889999999999999999999999877778888888999999999999999999843332 234789
Q ss_pred EeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC
Q 004296 200 DIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA 279 (763)
Q Consensus 200 D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~ 279 (763)
|+|||||-+|+++-. +|+.++ |..-||.+++..|+- .|++++ ++||..|+.--..
T Consensus 146 DiGGGTTGIsi~kkG----kViy~A-DEpTGGtHmtLvlAG--------~ygi~~-----------EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKG----KVIYSA-DEPTGGTHMTLVLAG--------NYGISL-----------EEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcC----cEEEec-cCCCCceeEEEEEec--------ccCcCH-----------hHHHHhhhccccc-
Confidence 999999999998755 466666 889999999877752 345543 5677777432111
Q ss_pred ceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCC
Q 004296 280 EAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP 359 (763)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~ 359 (763)
+|.=-.+.|+++++.+++.+.++..+ +..+.|+||+|.-|.+.+..+++|+.++
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccc
Confidence 11112457999999999999998776 4569999999999999999999999888
Q ss_pred ccCCCchhHHhcchHHh
Q 004296 360 RRSLNASECVARGCALQ 376 (763)
Q Consensus 360 ~~~~n~~eava~Gaa~~ 376 (763)
..+..|..-.-+|.|+.
T Consensus 255 ~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 255 HLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccCCCcceechhhhhhc
Confidence 88888777666666643
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.59 E-value=2.2e-14 Score=157.46 Aligned_cols=300 Identities=17% Similarity=0.162 Sum_probs=180.6
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCc---------eEEcHhHHHhHhhCCcchHHHHHHhhC
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQ---------RFIGAAGYASAMMHPKSTVSQVKRLIG 72 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~---------~~~G~~A~~~~~~~~~~~~~~~k~llg 72 (763)
++|+||+||.++++++..+..+.++ +||+|+...+. .++|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 4789999999999998766544433 48888765321 35677662110 0
Q ss_pred CCCCCHHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCC--CcceEEEEecCCCCH
Q 004296 73 RRYGDPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEM--PVVDCVIGVPSYFTD 150 (763)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~--~~~~~VitVP~~~~~ 150 (763)
.. .-..|+ .+|.+ .. -+.+..+++++... .++. .-..++|+.|...+.
T Consensus 59 ~~---------~~~~P~-----~~G~i------------~d-~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 59 GL---------ELKYPI-----EHGIV------------EN-WDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred Cc---------eecCCC-----cCCEE------------eC-HHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 011122 13322 11 23445566665542 2222 235699999999999
Q ss_pred HHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCC
Q 004296 151 LQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSL 229 (763)
Q Consensus 151 ~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~l 229 (763)
.+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|||+|+++|+++.+. +|.. +.......++
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~ 175 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDI 175 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccC
Confidence 9999998886 5779999999999999998775 35789999999999999875 3432 2222234689
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC---c------------eeEEe-ecccCCcc
Q 004296 230 GGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---E------------APLNI-ECLMDEKD 293 (763)
Q Consensus 230 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~------------~~i~i-~~l~~~~d 293 (763)
||.++|+.|.+++...- ...... .-...++.+|+.+..-. . ..... -.+.++..
T Consensus 176 GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~ 245 (373)
T smart00268 176 AGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT 245 (373)
T ss_pred cHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE
Confidence 99999999998886510 011110 11234555555542110 0 00000 01112322
Q ss_pred eEEEecHHHH---HHHHhhH-----HHHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHHHHHHHhhcC------C
Q 004296 294 VRGFIKREEF---EELASGL-----TEKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAITRLLTSLFG------R 357 (763)
Q Consensus 294 ~~~~itr~ef---e~l~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~~~l~~~fg------~ 357 (763)
+.+..+.| |.++.|. ...+.+.|.++|..+... ..-.+.|+|+||+|++|++.++|.+.+. .
T Consensus 246 --~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~ 323 (373)
T smart00268 246 --IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL 323 (373)
T ss_pred --EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc
Confidence 33333322 1222221 236777777777765321 1123679999999999999999988872 1
Q ss_pred C--CccCCCchhHHhcchHHhhhh
Q 004296 358 E--PRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 358 ~--~~~~~n~~eava~Gaa~~a~~ 379 (763)
+ +....++..++=.||+++|..
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred eeEEecCCCCccceEeCcccccCc
Confidence 1 223345567777888877754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.59 E-value=2e-13 Score=146.58 Aligned_cols=209 Identities=13% Similarity=0.172 Sum_probs=139.2
Q ss_pred EEEEecCCCCHHHH-HHHHHHHHHc------------CCceeeeecchHHHHHhhhccccCC---CCCCcceEEEEEeCC
Q 004296 140 CVIGVPSYFTDLQR-REYLNAASIA------------GLRPLRLIHDCTATALGYGIYKTDF---ANGGKSYIAFVDIGH 203 (763)
Q Consensus 140 ~VitVP~~~~~~qr-~~l~~Aa~~A------------Gl~~~~li~Ep~Aaal~y~~~~~~~---~~~~~~~vlv~D~Gg 203 (763)
++...|..+-..++ ..+++..... -+..+.++.+|.+|.+++....... .......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44589988754443 6666554221 1234678999999988777643211 112345789999999
Q ss_pred ceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeE
Q 004296 204 SDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPL 283 (763)
Q Consensus 204 gT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i 283 (763)
||||++++. ++.+ +...++....|..++.+.|.+++.... ++..+.. .++ +++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~~-----~~i----e~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASITP-----YML----EKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCCH-----HHH----HHH---HHcC---cE
Confidence 999999985 4444 334445678999999999998885432 2333221 122 222 2111 12
Q ss_pred EeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCC
Q 004296 284 NIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSL 363 (763)
Q Consensus 284 ~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~ 363 (763)
.+. .... +.+ ++++.++++++++++...|...+.. ..+++.|+|+||++++ +++.|++.|+. +....
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~~~~~ 320 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-VEKAD 320 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-eEEcC
Confidence 221 1111 122 4667889999999999988888853 3478999999999987 88999999984 35667
Q ss_pred CchhHHhcchHHhhhhhCC
Q 004296 364 NASECVARGCALQCAMLSP 382 (763)
Q Consensus 364 n~~eava~Gaa~~a~~~s~ 382 (763)
||..|.|+|...+|..+.+
T Consensus 321 ~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 321 ESQFANVRGYYKYGELLKN 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 9999999999998875543
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.43 E-value=2.3e-11 Score=134.94 Aligned_cols=206 Identities=12% Similarity=0.073 Sum_probs=131.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCC
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 216 (763)
..++||.|..++..+|+.+.+.+ +..|.+.+.+.+++.+++++++............+-+|||+|+|+|+++.+. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 45899999999999999988876 5558899999999999997763321100001234669999999999998764 34
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCc----------------
Q 004296 217 HMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE---------------- 280 (763)
Q Consensus 217 ~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---------------- 280 (763)
.. +.......++||+++|..|.++|.++ +..+... ..+..++.+|+.++.-..
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 32 22222245799999999999988642 1112111 112346666766542110
Q ss_pred -eeEEeecccCCcceEEEecHHHHHH---HHhhHH------HHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHHH
Q 004296 281 -APLNIECLMDEKDVRGFIKREEFEE---LASGLT------EKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAIT 348 (763)
Q Consensus 281 -~~i~i~~l~~~~d~~~~itr~efe~---l~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~ 348 (763)
..+..+...++....+.|..+.|.. ++.|-+ ..+.++|.++|.++..+ ..-.+.|+|+||+|.+|++.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 0122222112334467777776642 333321 14567777777765322 22346899999999999999
Q ss_pred HHHHhhcC
Q 004296 349 RLLTSLFG 356 (763)
Q Consensus 349 ~~l~~~fg 356 (763)
++|.+.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998885
No 38
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.35 E-value=9.9e-11 Score=127.30 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCC-CCCcc-eEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCC
Q 004296 150 DLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFA-NGGKS-YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDS 227 (763)
Q Consensus 150 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~-~~~~~-~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~ 227 (763)
....+.+.++++.||+++..+..+|.|.+-.+.+....+. ..... .++++|+|+++|+++++. +|.+ .. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~--~~-~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRM--LF-TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeE--EE-EEEe
Confidence 3567788999999999999999999988755531111111 12233 499999999999999985 3333 22 2357
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHH
Q 004296 228 SLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELA 307 (763)
Q Consensus 228 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~ 307 (763)
.+||.+|++.|.+.+ +++. ..||+.|..-.... . . -.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~~-----------~~Ae~~k~~~~~~~-----------~--~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLNP-----------EEAGEAKQQGGLPL-----------L--Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCCH-----------HHHHHHHhcCCCCC-----------c--h--------hHHHH
Confidence 899999999987433 2322 67888886532111 0 0 02344
Q ss_pred hhHHHHHHHHHHHHHHHc--CCCCCCccEEEEecCCCChHHHHHHHHhhcCCCC
Q 004296 308 SGLTEKIAIPCRKALADA--GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP 359 (763)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~ 359 (763)
++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v 310 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPT 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCe
Confidence 555555555555655432 2233468999999999999999999999998654
No 39
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.31 E-value=6.5e-11 Score=127.82 Aligned_cols=182 Identities=23% Similarity=0.296 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCC-CCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCC
Q 004296 151 LQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFAN-GGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSL 229 (763)
Q Consensus 151 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~-~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~l 229 (763)
..-....++++.|||++..+--++.|.+-.|......++. .....++++|+|+.+|.++++. +|.+. . .....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~--f-~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPI--F-SRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEE--E-EEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEE--E-EEEEee
Confidence 4566778889999999887766666655444432223332 2456899999999999999875 44432 2 224689
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhh
Q 004296 230 GGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASG 309 (763)
Q Consensus 230 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~ 309 (763)
||.++++.|++.+. ++. .+|+..|..-+-.. +...+++.+
T Consensus 211 G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999997652 221 45666665421100 222344555
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCc---------cCC----------CchhH
Q 004296 310 LTEKIAIPCRKALAD--AGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPR---------RSL----------NASEC 368 (763)
Q Consensus 310 ~~~~i~~~i~~~l~~--~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~---------~~~----------n~~ea 368 (763)
.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|.+.+|.++. ... .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 555555555555542 223345799999999999999999999999985431 111 25668
Q ss_pred HhcchHHhh
Q 004296 369 VARGCALQC 377 (763)
Q Consensus 369 va~Gaa~~a 377 (763)
+|.|.|+..
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998764
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.31 E-value=2.3e-11 Score=134.69 Aligned_cols=309 Identities=15% Similarity=0.177 Sum_probs=175.0
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceeEEEEcCCc-----eEEcHhHHHhHhhCCcchHHHHHHhhCCCCC
Q 004296 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQ-----RFIGAAGYASAMMHPKSTVSQVKRLIGRRYG 76 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~~~ii~n~~~~r~~ps~v~~~~~~-----~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 76 (763)
.+|-||+|+.++++++..+..+..+ +||+++..... ..+|..+... .+.
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~--------------- 58 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSN--------------- 58 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTG---------------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhh---------------
Confidence 5789999999999999755444332 48888765432 3677664210 000
Q ss_pred CHHHHhhhhcCCceeeeCCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHH
Q 004296 77 DPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREY 156 (763)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l 156 (763)
..-..|+ .+|. ... -+.+..++.++.... -.....-..++++.|..++..+|+.+
T Consensus 59 ------~~~~~p~-----~~g~------------i~~-~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l 113 (393)
T PF00022_consen 59 ------LELRSPI-----ENGV------------IVD-WDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKL 113 (393)
T ss_dssp ------EEEEESE-----ETTE------------ESS-HHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHH
T ss_pred ------eeeeeec-----cccc------------ccc-ccccccccccccccc-cccccccceeeeeccccCCchhhhhh
Confidence 0000011 1221 122 234455555555421 11122345699999999999999988
Q ss_pred HHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHH
Q 004296 157 LNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFD 235 (763)
Q Consensus 157 ~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D 235 (763)
.+.+ +..|++.+.+++++.+|+++++. .+-+|||+|++.|.|+.+. +|.. +.......++||.+++
T Consensus 114 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt 180 (393)
T PF00022_consen 114 AEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLT 180 (393)
T ss_dssp HHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHH
T ss_pred hhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeeee--eccc-cccccccccccHHHHH
Confidence 7775 56799999999999999877764 2569999999999988763 4432 2112224579999999
Q ss_pred HHHHHHHHHH-HH--hhhccccc----ccHHHHHHHHHHHHHHhhhc---CCC------------CceeEEeecccCCcc
Q 004296 236 DVLFGYFAAK-FK--EQYKINVY----SNVRACIRLRAACEKLKKVL---SAN------------AEAPLNIECLMDEKD 293 (763)
Q Consensus 236 ~~l~~~l~~~-~~--~~~~~~~~----~~~~~~~rL~~~ae~~K~~L---s~~------------~~~~i~i~~l~~~~d 293 (763)
..|.+.|..+ +. ..+..... ...-....-...++.+|+.+ +.+ ....+.++ ++.
T Consensus 181 ~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~- 256 (393)
T PF00022_consen 181 EYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ- 256 (393)
T ss_dssp HHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS-
T ss_pred HHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc-
Confidence 9999988773 10 00000000 00000001112233333332 111 11222222 332
Q ss_pred eEEEecHHHHHHHHhhHHH----------------HHHHHHHHHHHHcCCCCC--CccEEEEecCCCChHHHHHHHHhhc
Q 004296 294 VRGFIKREEFEELASGLTE----------------KIAIPCRKALADAGLHVD--KIHSVEIVGSGSRIPAITRLLTSLF 355 (763)
Q Consensus 294 ~~~~itr~efe~l~~~~~~----------------~i~~~i~~~l~~~~~~~~--~i~~V~lvGG~srip~v~~~l~~~f 355 (763)
.+.+..+.| .+.+.+|+ .+..+|.+++..+..+.. -...|+|+||+|++|++.++|.+.+
T Consensus 257 -~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL 334 (393)
T PF00022_consen 257 -TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQEL 334 (393)
T ss_dssp -EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHH
T ss_pred -ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHh
Confidence 556665554 33343332 477788888877643221 1478999999999999999998777
Q ss_pred CC--------CCccCC-CchhHHhcchHHhhhhh
Q 004296 356 GR--------EPRRSL-NASECVARGCALQCAML 380 (763)
Q Consensus 356 g~--------~~~~~~-n~~eava~Gaa~~a~~~ 380 (763)
.. .+.... ++..++=.||+++|..-
T Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 335 RSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 31 123333 78889999999998753
No 41
>PTZ00281 actin; Provisional
Probab=99.27 E-value=1.4e-10 Score=126.87 Aligned_cols=218 Identities=15% Similarity=0.133 Sum_probs=137.2
Q ss_pred cceEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC
Q 004296 137 VVDCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
-..++||-|..++..+|+.|.+. .+..+++.+.+...+.+++++++. .+-+|||+|++.|.++-+.-
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~PV~d-- 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVMDSGDGVSHTVPIYE-- 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------ceEEEEECCCceEEEEEEEe--
Confidence 35688899999999999998875 567788889999999999876542 46799999999999876542
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC---c---------eeE
Q 004296 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---E---------APL 283 (763)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---~---------~~i 283 (763)
|.. +.......++||.++++.|.+.|... +..... . .- ...++.+|+.++... . ...
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 322 22233356899999999999887542 111111 0 00 133556666653111 0 001
Q ss_pred Eee-cccCCcceEEEecHHHH---HHHHhhHH-----HHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHHHHHHH
Q 004296 284 NIE-CLMDEKDVRGFIKREEF---EELASGLT-----EKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAITRLLT 352 (763)
Q Consensus 284 ~i~-~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~~~l~ 352 (763)
... .+.++. .+.|..+.| |-+++|-+ ..+.++|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|.
T Consensus 238 ~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 111 122232 345555444 22333321 14566777777765322 122468999999999999999998
Q ss_pred hhcC----C--C--CccCCCchhHHhcchHHhhhh
Q 004296 353 SLFG----R--E--PRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 353 ~~fg----~--~--~~~~~n~~eava~Gaa~~a~~ 379 (763)
..+. . + +..+.++..++=+|++++|..
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 7773 1 1 233346677888899888863
No 42
>PTZ00452 actin; Provisional
Probab=99.25 E-value=3.4e-10 Score=123.40 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=135.5
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC
Q 004296 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
-..+++|-|...+..+|+.|.+.+ +..+.+.+.+.+.+.+++++++. .+-+|||+|.|.|.++-+. +
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------~tglVVDiG~~~t~v~PV~--d 167 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------TIGLVVDSGEGVTHCVPVF--E 167 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----------ceeeeecCCCCcceEEEEE--C
Confidence 356899999999999999887765 56788888899999988876542 4679999999999988764 4
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC----------------
Q 004296 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---------------- 279 (763)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---------------- 279 (763)
|.. +.......++||.+++..|.+.|... +..+... .. +..++.+|+.++...
T Consensus 168 G~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~ 236 (375)
T PTZ00452 168 GHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQ 236 (375)
T ss_pred CEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCc
Confidence 432 22222346799999999999887532 1111110 00 122444555543111
Q ss_pred ceeEEeecccCCcceEEEecHHHHH---HHHhhHH-----HHHHHHHHHHHHHcCC--CCCCccEEEEecCCCChHHHHH
Q 004296 280 EAPLNIECLMDEKDVRGFIKREEFE---ELASGLT-----EKIAIPCRKALADAGL--HVDKIHSVEIVGSGSRIPAITR 349 (763)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~V~lvGG~srip~v~~ 349 (763)
..... |.++. .+.+..+.|. -+++|-+ ..+..+|.+++..+.. ...-...|+|+||+|.+|++.+
T Consensus 237 ~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 237 DSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred CceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHH
Confidence 01111 22332 3456666552 2233322 2356677777776532 2223479999999999999999
Q ss_pred HHHhhcC----C--C--CccCCCchhHHhcchHHhhhh
Q 004296 350 LLTSLFG----R--E--PRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 350 ~l~~~fg----~--~--~~~~~n~~eava~Gaa~~a~~ 379 (763)
+|...+. . + +..+.+...++=+|++++|..
T Consensus 312 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred HHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 9987773 1 1 222334556777888888753
No 43
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.23 E-value=6.9e-10 Score=118.66 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=129.4
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHHHHc---------CCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCcee
Q 004296 136 PVVDCVIGVPSYFTDLQRREYLNAASIA---------GLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDT 206 (763)
Q Consensus 136 ~~~~~VitVP~~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~ 206 (763)
.+..+|+..|..+...+|..+++...-. -+..+.++.+|.+|.+.|........ .....++|+|+|++||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~-~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL-TGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc-cCcCcEEEEecCCCee
Confidence 3557999999999888999998886531 33467899999999888765432111 2456789999999999
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEee
Q 004296 207 QVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIE 286 (763)
Q Consensus 207 dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~ 286 (763)
|+.++. ++.+ +....+....|..++-+.|.+.+.+++ +.+...+.. ++-.+...-|. +.+
T Consensus 180 D~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~---~i~~~l~~g~~---------~~~- 239 (320)
T TIGR03739 180 DWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDID---RIDLALRTGKQ---------PRI- 239 (320)
T ss_pred eeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHH---HHHHHHHhCCc---------eee-
Confidence 997763 4444 445555678999999888888887654 333111111 11111111110 001
Q ss_pred cccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCC-CCccCCCc
Q 004296 287 CLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-EPRRSLNA 365 (763)
Q Consensus 287 ~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~-~~~~~~n~ 365 (763)
.....| |+ +.-+..+..++++..-+.+.+ + ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 -~gk~~d----i~--~~~~~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 -YQKPVD----IK--RCLELAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred -cceecC----ch--HHHHHHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 001112 22 111222333333333333333 1 1246899999999998 568999999974 44456799
Q ss_pred hhHHhcchHHhh
Q 004296 366 SECVARGCALQC 377 (763)
Q Consensus 366 ~eava~Gaa~~a 377 (763)
..|.|+|-..++
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987665
No 44
>PTZ00004 actin-2; Provisional
Probab=99.20 E-value=6.3e-10 Score=121.85 Aligned_cols=214 Identities=12% Similarity=0.107 Sum_probs=136.6
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC
Q 004296 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
-..+++|-|..++..+|+.+.+.+ +..|++.+.+..++.+++++++. .+-+|+|+|++.|+++.+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----------ceEEEEECCCCcEEEEEEE--C
Confidence 346889999999999998877765 66799999999999999876642 4669999999999988764 3
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC----------------
Q 004296 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---------------- 279 (763)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~---------------- 279 (763)
|.. +.......++||.+++..|.+.+... +..+.. .. -...++.+|+.+....
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 433 22233356799999999999988542 111111 11 1123455555542110
Q ss_pred -ceeEEeecccCCcceEEEecHHHHH---HHHhhH------HHHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHH
Q 004296 280 -EAPLNIECLMDEKDVRGFIKREEFE---ELASGL------TEKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAI 347 (763)
Q Consensus 280 -~~~i~i~~l~~~~d~~~~itr~efe---~l~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v 347 (763)
...+. +.++. .+.|..+.|. -++.|- ...+.++|.+++..+..+ ..-...|+|+||+|.+|.+
T Consensus 238 ~~~~y~---lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 238 YEESYE---LPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cceEEE---CCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCH
Confidence 01111 22332 3455555442 344442 234566777777765432 2224789999999999999
Q ss_pred HHHHHhhcC----C----CCccCCCchhHHhcchHHhhh
Q 004296 348 TRLLTSLFG----R----EPRRSLNASECVARGCALQCA 378 (763)
Q Consensus 348 ~~~l~~~fg----~----~~~~~~n~~eava~Gaa~~a~ 378 (763)
.++|...+. . .+....++..++=+||+++|.
T Consensus 313 ~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 313 PERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 999988773 1 122334566777788888775
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.18 E-value=1.4e-09 Score=118.62 Aligned_cols=217 Identities=10% Similarity=0.059 Sum_probs=135.7
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC
Q 004296 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
-..+++|-|+.++..+|+.+.+.+ +..|++.+.+.+.+.+++++++. .+-+|||+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------TNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC----------ceEEEEeCCCCceEEEEEE--C
Confidence 346889999999999999987664 66788888999999998876642 4779999999999987664 3
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCC-----------ceeEE
Q 004296 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA-----------EAPLN 284 (763)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-----------~~~i~ 284 (763)
|.. +.......++||++++..|.+.+.+. .+..+.. .-+..++.+|+.++.-. .....
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~-------~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS-------AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc---CCCCCcH-------HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 432 22223346899999999999887532 1111111 11233455555543110 00000
Q ss_pred ee-cccCCcceEEEecHHHHH---HHHhhHH-----HHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHHHHHHHh
Q 004296 285 IE-CLMDEKDVRGFIKREEFE---ELASGLT-----EKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAITRLLTS 353 (763)
Q Consensus 285 i~-~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~~~l~~ 353 (763)
.. .+.++. .+.|..+.|. -++.|-+ .-+.++|.+.+.++..+ ..-...|+|+||+|.+|++.++|..
T Consensus 243 ~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 243 LPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred eeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 11 112232 3456665552 2333321 14566677777665332 2234789999999999999999988
Q ss_pred hcCC----C----CccCCCchhHHhcchHHhhh
Q 004296 354 LFGR----E----PRRSLNASECVARGCALQCA 378 (763)
Q Consensus 354 ~fg~----~----~~~~~n~~eava~Gaa~~a~ 378 (763)
.+.. . +....++..++=+|++++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 8731 1 22234556677788888875
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.2e-07 Score=96.30 Aligned_cols=177 Identities=16% Similarity=0.254 Sum_probs=115.2
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHhhhccccCC-CCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCch
Q 004296 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDF-ANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (763)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~-~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 231 (763)
-....+|++.|||....+--|..|.--+|...-.++ +......|+|+|+|+..+.++++.-. +.+.+. +.++||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g----k~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG----KILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC----eeeeEe-eccCcH
Confidence 455678999999998878778888766665222221 22334458999999999999998654 345554 789999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHH
Q 004296 232 RDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLT 311 (763)
Q Consensus 232 ~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~ 311 (763)
+.+++.+.+.+ +.+. ..++.+|....-.. |+. -+-+.....+++
T Consensus 226 ~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~-------------~y~----~~vl~~f~~~l~ 269 (354)
T COG4972 226 DQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT-------------DYG----SEVLRPFLGELT 269 (354)
T ss_pred HHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC-------------chh----HHHHHHHHHHHH
Confidence 99999987544 3332 45666775543221 111 111223334455
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcch
Q 004296 312 EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGC 373 (763)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Ga 373 (763)
++|...|+-.+..++ ..+|+.|+|.||++++-.+.+++.+.++.+.. ..||-...+.++
T Consensus 270 ~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~-vanPf~~~~~~~ 328 (354)
T COG4972 270 QEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIPTE-VANPFAYMALNV 328 (354)
T ss_pred HHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCCeE-eeCHHHHHhhhh
Confidence 555555555555554 34899999999999999999999999986542 345544433333
No 47
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.96 E-value=5.9e-09 Score=111.18 Aligned_cols=172 Identities=13% Similarity=0.199 Sum_probs=97.2
Q ss_pred ceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 004296 166 RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (763)
Q Consensus 166 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~ 245 (763)
..+.+++|+.||.+.+.... .+...++|+|+||+|+|++++. ++.-.+-...+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~-----~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL-----DEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHhh-----cccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 46789999999998876542 2346799999999999999885 2211233334457899999888888777541
Q ss_pred HHhhhcccccccHHHHHHHHHHHHHH-hhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004296 246 FKEQYKINVYSNVRACIRLRAACEKL-KKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALAD 324 (763)
Q Consensus 246 ~~~~~~~~~~~~~~~~~rL~~~ae~~-K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~ 324 (763)
+...+. ..++.+ +... .... +.....+.+ ..+++.++++..++++..-|.+.+.
T Consensus 214 -----~~~~s~---------~~~~~ii~~~~---~~~~--~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~- 268 (318)
T PF06406_consen 214 -----GIDTSE---------LQIDDIIRNRK---DKGY--LRQVINDED-----VIDDVSEVIEEAVEELINRILRELG- 268 (318)
T ss_dssp -----SBHHHH---------HHHHHHHHTTT----HHH--HHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred -----cCCCcH---------HHHHHHHHhhh---ccce--ecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 111110 011111 1000 0000 000001111 1334444455555555444444443
Q ss_pred cCCCCCCccEEEEecCCCChHHHHHHHHhhcC---CCCccCCCchhHHhcchH
Q 004296 325 AGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG---REPRRSLNASECVARGCA 374 (763)
Q Consensus 325 ~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg---~~~~~~~n~~eava~Gaa 374 (763)
...+++.|+|+||++. .+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 269 ---~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 269 ---DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ---TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ---hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 2347899999999975 57889999987 346667899999999964
No 48
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.95 E-value=2.5e-08 Score=102.60 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=106.1
Q ss_pred eeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHh
Q 004296 169 RLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKE 248 (763)
Q Consensus 169 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~ 248 (763)
..++|.+|-+.+..... |..-.|+|+||..+-+..+. +|.+.-......+..|+..|.+.+++.+
T Consensus 73 ~~~~ei~~~~~g~~~~~-------~~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l------ 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA-------PEARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL------ 137 (248)
T ss_pred CceEEhhHHHHHHHHHC-------CCCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc------
Confidence 46788888765443322 12235999999998888776 5654433345466788888988888665
Q ss_pred hhcccccccHHHHHHHHHHHHHHhhhc----CCCCceeEEeec-ccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHH
Q 004296 249 QYKINVYSNVRACIRLRAACEKLKKVL----SANAEAPLNIEC-LMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALA 323 (763)
Q Consensus 249 ~~~~~~~~~~~~~~rL~~~ae~~K~~L----s~~~~~~i~i~~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~ 323 (763)
++++ ++++.++..- .-+....+..+. +... +....++ ++++..+++.+...+.+.+.
T Consensus 138 --~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 138 --GVSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred --CCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 2322 2333333221 111111222211 0000 0001223 45666666666666666555
Q ss_pred HcCCCCCCcc-EEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHh
Q 004296 324 DAGLHVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (763)
Q Consensus 324 ~~~~~~~~i~-~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~ 376 (763)
..+ ++ .|+++||.+++|.+.+.+.+.++.++..+.+|..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 433 44 7999999999999999999999999988999999999999973
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.86 E-value=2.8e-07 Score=94.89 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcc
Q 004296 116 QVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (763)
Q Consensus 116 ~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (763)
++..++++|..+.- -.....-.-++||-|++=+.+.|+.+.+.+ +...++...|..+++++|++-| ..
T Consensus 86 D~~~~~w~~~~~~~-Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQ-LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhh-hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 35556666655421 111222345899999998889998877764 6667778888888888886644 35
Q ss_pred eEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 004296 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (763)
Q Consensus 195 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~ 245 (763)
+.||+|+|++++.|+-+. +|.+--.+.. -.++||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 789999999999998764 4544334444 56899999999999999875
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.77 E-value=5.2e-08 Score=104.92 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=94.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHH------------cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCce
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAASI------------AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSD 205 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT 205 (763)
.-.+||-+.. .++.+++|++. ||+++-.++. |.|++.+.... ++...++++||||||
T Consensus 89 ~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse------Eke~gVa~IDIGgGT 157 (475)
T PRK10719 89 GAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE------ERNTRVLNIDIGGGT 157 (475)
T ss_pred cEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh------hccCceEEEEeCCCc
Confidence 3467787764 44556666665 6777666666 88887655421 557889999999999
Q ss_pred eEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEe
Q 004296 206 TQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNI 285 (763)
Q Consensus 206 ~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i 285 (763)
|+++++.-. .+.++. ..++||++++.. -+ ..+ ..-.|. ..+|.+. +-..+
T Consensus 158 T~iaVf~~G----~l~~T~-~l~vGG~~IT~D-~~---------~~i-~yis~~-~~~l~~~---~~~~~---------- 207 (475)
T PRK10719 158 ANYALFDAG----KVIDTA-CLNVGGRLIETD-SQ---------GRV-TYISPP-GQMILDE---LGLAI---------- 207 (475)
T ss_pred eEEEEEECC----EEEEEE-EEecccceEEEC-CC---------CCE-EEEChH-HHHHHHH---cCCCc----------
Confidence 999998644 344444 678999988654 11 000 001111 1222221 11001
Q ss_pred ecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHH-------HHHH-cCCC-CCCccEEEEecCCCCh
Q 004296 286 ECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK-------ALAD-AGLH-VDKIHSVEIVGSGSRI 344 (763)
Q Consensus 286 ~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-------~l~~-~~~~-~~~i~~V~lvGG~sri 344 (763)
..--.++.+++..+|+.+.+-+.+.+.. .|-. ..++ ...++.|.+.||-+..
T Consensus 208 -------~~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 208 -------TDGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred -------cccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1122566788888888777666666542 1111 1233 3568999999997654
No 51
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.63 E-value=8.9e-07 Score=97.35 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=70.0
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC
Q 004296 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
-..+++|-|..+....|..+.+.+ +...++.+.+..++.+++.+.+ .. ..+.+|+|+|.+.|+|+-+--.
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g--~~------~~~g~ViD~G~~~t~v~PV~DG- 176 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASG--SS------DETGLVIDSGDSVTHVIPVVDG- 176 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcC--CC------CCceEEEEcCCCceeeEeeecc-
Confidence 346999999999999998877664 5556666666666666654443 21 1478999999999998876422
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 004296 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (763)
Q Consensus 216 ~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~ 245 (763)
. .+........+||++++..|.+.|...
T Consensus 177 -~-~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 177 -I-VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred -c-cccccceeeecCcHHHHHHHHHHHhhc
Confidence 2 122223356799999999999988874
No 52
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.61 E-value=7.7e-06 Score=95.38 Aligned_cols=267 Identities=17% Similarity=0.181 Sum_probs=158.1
Q ss_pred eeecHHHHHHHHHHHHHHHHHhhcCC--------------CcceEEEEecCCCCHHHHHHHHHHHHHc--------CCc-
Q 004296 110 HTFCPVQVMGMLFSHLKDVAEKNLEM--------------PVVDCVIGVPSYFTDLQRREYLNAASIA--------GLR- 166 (763)
Q Consensus 110 ~~~~~~~l~a~~L~~l~~~a~~~~~~--------------~~~~~VitVP~~~~~~qr~~l~~Aa~~A--------Gl~- 166 (763)
-.||-..+..++|..+...|--+++. ..+.+++|||+-....+|+.++++++.| |..
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35777788888888888877555432 2567999999999999999998888665 431
Q ss_pred --------------------eeeeecchHHHHHhhhcc------------------ccCCC------CCCcceEEEEEeC
Q 004296 167 --------------------PLRLIHDCTATALGYGIY------------------KTDFA------NGGKSYIAFVDIG 202 (763)
Q Consensus 167 --------------------~~~li~Ep~Aaal~y~~~------------------~~~~~------~~~~~~vlv~D~G 202 (763)
+.-=-+|.||.-+=|... +.+.. ..+.-.|.-+|||
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 111135555543333221 11110 2234568999999
Q ss_pred CceeEEEEEEEe----CC-eEEEEEE---eCCCCCchHHHHHHHHHHH-HHHHHhh---hc-------------cccccc
Q 004296 203 HSDTQVSIVSFE----AG-HMKVLSH---AFDSSLGGRDFDDVLFGYF-AAKFKEQ---YK-------------INVYSN 257 (763)
Q Consensus 203 ggT~dvsv~~~~----~~-~~~vl~~---~~~~~lGG~~~D~~l~~~l-~~~~~~~---~~-------------~~~~~~ 257 (763)
|||||+.|-.+. .| ...+.-. .-+-.+.|+||-..+++.+ +..+... .| .+-...
T Consensus 575 GGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~ 654 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSD 654 (1002)
T ss_pred CCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhH
Confidence 999999998886 22 2222211 1134588888877766543 3333322 11 110000
Q ss_pred ----HH----------HHHHHHHHHHHHhh-------------hcC-CCCceeE------Eeec------ccCCcceEEE
Q 004296 258 ----VR----------ACIRLRAACEKLKK-------------VLS-ANAEAPL------NIEC------LMDEKDVRGF 297 (763)
Q Consensus 258 ----~~----------~~~rL~~~ae~~K~-------------~Ls-~~~~~~i------~i~~------l~~~~d~~~~ 297 (763)
.| ...+++.++|..=. .|. ......+ .+.. -++=.|+.+.
T Consensus 655 ~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l~ 734 (1002)
T PF07520_consen 655 QDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPLE 734 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceEE
Confidence 00 11345566665321 111 0000000 0000 0111345678
Q ss_pred ecHHHHHHHHh---hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCc--------------
Q 004296 298 IKREEFEELAS---GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPR-------------- 360 (763)
Q Consensus 298 itr~efe~l~~---~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~-------------- 360 (763)
|+...+...+. -.+......+-+++...+ -|.++|+|--||+|.|+..+......++.
T Consensus 735 i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WY 809 (1002)
T PF07520_consen 735 IDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWY 809 (1002)
T ss_pred EcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecccc
Confidence 99999988774 455555555555665544 46799999999999999999999764432
Q ss_pred ------cCCCchhHHhcchHHhhhhhC
Q 004296 361 ------RSLNASECVARGCALQCAMLS 381 (763)
Q Consensus 361 ------~~~n~~eava~Gaa~~a~~~s 381 (763)
+--||-..||+||.+.+....
T Consensus 810 PF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 810 PFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 223899999999977654433
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.59 E-value=1.4e-05 Score=82.10 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=42.0
Q ss_pred cEEEEecCCCChHHHHHHHHhhcCCCCc-cCCCchhHHhcchHHhhhh
Q 004296 333 HSVEIVGSGSRIPAITRLLTSLFGREPR-RSLNASECVARGCALQCAM 379 (763)
Q Consensus 333 ~~V~lvGG~srip~v~~~l~~~fg~~~~-~~~n~~eava~Gaa~~a~~ 379 (763)
..|+|+||.++.|.+.+.+++.+|.++. .+.+|..+.|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999998776 5678999999999999853
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.46 E-value=2.8e-05 Score=83.14 Aligned_cols=46 Identities=28% Similarity=0.274 Sum_probs=43.3
Q ss_pred cEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhh
Q 004296 333 HSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCA 378 (763)
Q Consensus 333 ~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~ 378 (763)
+.|+++||.++.+.+.+.+++.+|.++..+.+|..+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999885
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.39 E-value=3.8e-05 Score=79.98 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=98.8
Q ss_pred eeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHH
Q 004296 168 LRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFK 247 (763)
Q Consensus 168 ~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~ 247 (763)
-..++|-+|-+.+..... +..=.|+|+||--.-+. .+.+|.+.-..-..-+.-|.-.|-+.+++.|
T Consensus 210 D~~~~Ei~ah~kgA~~f~-------p~~dtIiDIGGQD~K~i--~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L----- 275 (396)
T COG1924 210 DKVVVEISAHAKGARYFA-------PDVDTVIDIGGQDSKVI--KLEDGKVDDFTMNDKCAAGTGRFLEVIARRL----- 275 (396)
T ss_pred CcceeeeehhHHHHHHhC-------CCCcEEEEecCcceeEE--EEeCCeeeeeEeccccccccchHHHHHHHHh-----
Confidence 345677777554433221 11118899999766654 4557755443333233334333433333333
Q ss_pred hhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHH-HHHHcC
Q 004296 248 EQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK-ALADAG 326 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-~l~~~~ 326 (763)
+.++.+ |-+.+.+.+..-.-++...+..++-.-. -..-- ...|+++..+...+..-+-. +++.-.
T Consensus 276 ---gv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~-~~~~G---~~~EdI~AGl~~Sv~~~v~~~~~~~~~ 341 (396)
T COG1924 276 ---GVDVEE-------LGKLALKATPPVKINSRCAVFAESEVIS-ALAEG---ASPEDILAGLAYSVAENVAEKVIKRVD 341 (396)
T ss_pred ---CCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHH-HHHcC---CCHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 333321 2234444443222222333322210000 00000 12355555555555443333 444433
Q ss_pred CCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 327 LHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 327 ~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
+. +. |+|+||.+....+.+++.+.+|.++.++.+|...-|+|||++|..
T Consensus 342 i~--~~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 342 IE--EP--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred CC--CC--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 32 22 999999999999999999999999999999999999999999863
No 56
>PRK10331 L-fuculokinase; Provisional
Probab=98.21 E-value=0.0001 Score=83.44 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=56.4
Q ss_pred EecHHHHHHHHhhHH-HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHH
Q 004296 297 FIKREEFEELASGLT-EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (763)
Q Consensus 297 ~itr~efe~l~~~~~-~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~ 375 (763)
.-+|.++-+.+-+-+ -.+...++ .+++.+ ...++.|.++||+++.|.+.+++.+.||.++.... ..|+.++|||+
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~ 432 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQ-VLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAM 432 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHH
Confidence 345666554433222 22223333 333332 22478999999999999999999999999986554 55788999999
Q ss_pred hhhhhCCC
Q 004296 376 QCAMLSPA 383 (763)
Q Consensus 376 ~a~~~s~~ 383 (763)
.|+.-.+.
T Consensus 433 la~~~~G~ 440 (470)
T PRK10331 433 FGWYGVGE 440 (470)
T ss_pred HHHHhcCC
Confidence 99876554
No 57
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.16 E-value=0.00045 Score=70.22 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=89.8
Q ss_pred eecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEe-CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHh
Q 004296 170 LIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE-AGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKE 248 (763)
Q Consensus 170 li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~ 248 (763)
.++|-+|-|.+..... |..=-|+|+||--+-+ +.+. +|.+.-..-..-+.-|.-.|=+.+++.|
T Consensus 80 ~vtEIt~ha~GA~~~~-------p~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L------ 144 (262)
T TIGR02261 80 HFYSMTTHARGAIYLN-------PEARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYL------ 144 (262)
T ss_pred CeeEEeHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHh------
Confidence 3568887765443221 2334789999987764 4453 4543322222223334334434444333
Q ss_pred hhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Q 004296 249 QYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLH 328 (763)
Q Consensus 249 ~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~ 328 (763)
++++.+ |-..+.+.+....-++...+..++-.-. -+.--.+|++ ++.-+...+..-+-..+++.+..
T Consensus 145 --~i~lee-------l~~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~ed---I~aGl~~sia~r~~~~~~~~~~~ 211 (262)
T TIGR02261 145 --GIAQDE-------IGSLSQQADNPEKVSGICAVLAETDVIN-MVSRGISAPN---ILKGIHESMADRLAKLLKSLGAL 211 (262)
T ss_pred --CCCHHH-------HHHHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccCCC
Confidence 233211 1122333333322233333333311000 0011233433 33333333333333333333211
Q ss_pred CCCccEEEEecCCCChHHHHHHHHhhcC-CC----CccCCCchhHHhcchHHhh
Q 004296 329 VDKIHSVEIVGSGSRIPAITRLLTSLFG-RE----PRRSLNASECVARGCALQC 377 (763)
Q Consensus 329 ~~~i~~V~lvGG~srip~v~~~l~~~fg-~~----~~~~~n~~eava~Gaa~~a 377 (763)
-..|+|+||.++.+.+.+.+++.++ .+ +..+.+|+.+.|+|||++|
T Consensus 212 ---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 ---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1359999999999999999999884 23 4456688999999999875
No 58
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.07 E-value=0.00014 Score=82.32 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=57.8
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHh
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~ 376 (763)
.-+|.+|-+.+-+-+.-....+-+.+++.+. ..++.|.++||+++.|.+.+++.+.||.++...-+ .++.++|||+.
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~ 437 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMF 437 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHH
Confidence 3456665544433333233333344444431 14788999999999999999999999999865544 57889999999
Q ss_pred hhhhCCC
Q 004296 377 CAMLSPA 383 (763)
Q Consensus 377 a~~~s~~ 383 (763)
|+.-.+.
T Consensus 438 a~~a~G~ 444 (465)
T TIGR02628 438 GFYGVGE 444 (465)
T ss_pred HHHhcCc
Confidence 9866543
No 59
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00016 Score=82.51 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=53.5
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHH
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~ 375 (763)
..+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+.+.+++.+.||.++... ...|+.+.|+|.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~-~~~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVP-EVEEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEec-CcccchHHHHHH
Confidence 44676666554444433333333445444 43 46789999999999999999999999988755 345555555555
Q ss_pred hhhhhC
Q 004296 376 QCAMLS 381 (763)
Q Consensus 376 ~a~~~s 381 (763)
+++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555443
No 60
>PRK13317 pantothenate kinase; Provisional
Probab=98.03 E-value=0.00095 Score=69.32 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=42.4
Q ss_pred CccEEEEec-CCCChHHHHHHHHhhc---CCCCccCCCchhHHhcchHHhhh
Q 004296 331 KIHSVEIVG-SGSRIPAITRLLTSLF---GREPRRSLNASECVARGCALQCA 378 (763)
Q Consensus 331 ~i~~V~lvG-G~srip~v~~~l~~~f---g~~~~~~~n~~eava~Gaa~~a~ 378 (763)
.+..|+++| |.++.|.+++.+.+++ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457899999 7999999999999988 56778888999999999999875
No 61
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.93 E-value=0.00028 Score=76.64 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=56.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCceeee---ecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCC
Q 004296 140 CVIGVPSYFTDLQRREYLNAASIAGLRPLRL---IHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (763)
Q Consensus 140 ~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 216 (763)
++||==+--..+.|..+..-+..||==++.- --|+.-|+-..|... +.......|+=+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~--~S~~~~~~V~NiDIGGGTtN~avf~~G-- 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAA--LSKEHHTVVANIDIGGGTTNIAVFDNG-- 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHH--HhhhhCCeEEEEEeCCCceeEEEEECC--
Confidence 5666555556677777777777777322211 123333333222211 122557889999999999999998765
Q ss_pred eEEEEEEeCCCCCchHHH
Q 004296 217 HMKVLSHAFDSSLGGRDF 234 (763)
Q Consensus 217 ~~~vl~~~~~~~lGG~~~ 234 (763)
++++++ ..++||+-|
T Consensus 164 --~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTA-CLDIGGRLI 178 (473)
T ss_pred --EEEEEE-EEeeccEEE
Confidence 577776 678999876
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.92 E-value=0.00065 Score=74.83 Aligned_cols=85 Identities=18% Similarity=0.082 Sum_probs=52.7
Q ss_pred eEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCC--------------
Q 004296 294 VRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP-------------- 359 (763)
Q Consensus 294 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~-------------- 359 (763)
+.+.|.-.++++.+-..--.|...++...+.. +--+-|.++|+|--||+|.||..++.....++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaI--n~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~W 820 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAI--NHYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTW 820 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHH--hhhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccce
Confidence 34466666666554322112333333333221 12245789999999999999999988865433
Q ss_pred ------ccCCCchhHHhcchHHhhhhh
Q 004296 360 ------RRSLNASECVARGCALQCAML 380 (763)
Q Consensus 360 ------~~~~n~~eava~Gaa~~a~~~ 380 (763)
.+--||...+|.||.+.+..+
T Consensus 821 YPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 821 YPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred ecccccCcCCCcchHHHHHHHHHHHHh
Confidence 122389999999997766543
No 63
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.88 E-value=0.004 Score=71.27 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=55.9
Q ss_pred cHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhh
Q 004296 299 KREEFEELA-SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (763)
Q Consensus 299 tr~efe~l~-~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 377 (763)
+|.+|-..+ +.+.-.+...++...+..+. .++.|.++||+++.+.+.+++.+.||.++...- ..|+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~-~~e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPE-SYESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecC-CCCcchHHHHHHH
Confidence 455544332 22333333334433333343 478999999999999999999999999986554 4468899999999
Q ss_pred hhhCCC
Q 004296 378 AMLSPA 383 (763)
Q Consensus 378 ~~~s~~ 383 (763)
+.-.+.
T Consensus 447 ~~~~G~ 452 (505)
T TIGR01314 447 LKALGL 452 (505)
T ss_pred HHhcCc
Confidence 876554
No 64
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.72 E-value=0.00031 Score=70.13 Aligned_cols=189 Identities=20% Similarity=0.212 Sum_probs=97.9
Q ss_pred HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 004296 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (763)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~ 240 (763)
+..|.++..-=-|+.+|.+...... ..+...+++|+||||||.+++.-. |.+.-+.-+ -.|+.++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP-----Gt~~PlaIlDmG~GSTDAsii~~~-g~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP-----GTDKPLAILDMGGGSTDASIINRD-GEVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST-----T--SSEEEEEE-SSEEEEEEE-TT-S-EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCC-----CCCCCeEEEecCCCcccHHHhCCC-CcEEEEEec----CCchhhHHHHHH
Confidence 4468888777789999988766543 345679999999999999998654 444333333 247777776653
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEe--e---------c-----------ccCC--cceEE
Q 004296 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNI--E---------C-----------LMDE--KDVRG 296 (763)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i--~---------~-----------l~~~--~d~~~ 296 (763)
.| +++.. .-||.+|+-=-+.-+..+++ | . +-++ ..+..
T Consensus 176 EL--------Gl~d~----------~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLEDR----------ELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-H----------HHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCCCH----------HHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 32 22211 34666665321111110110 0 0 0000 00111
Q ss_pred EecHHHHHHHHhhHHHH-HHHHHHHHHHHc--CCCCCCccEEEEecCCCChHHHHHHHHhhcC--------CCCccCCCc
Q 004296 297 FIKREEFEELASGLTEK-IAIPCRKALADA--GLHVDKIHSVEIVGSGSRIPAITRLLTSLFG--------REPRRSLNA 365 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~-i~~~i~~~l~~~--~~~~~~i~~V~lvGG~srip~v~~~l~~~fg--------~~~~~~~n~ 365 (763)
.++-+.+..+-...-++ +..-.-++|++- .-+..+|+.|+|+|||+.=.-|-+++.+.+. -++.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22233333222222121 122233444432 2245589999999999986666666666652 245556679
Q ss_pred hhHHhcchHHhh
Q 004296 366 SECVARGCALQC 377 (763)
Q Consensus 366 ~eava~Gaa~~a 377 (763)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998653
No 65
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.64 E-value=0.00043 Score=73.70 Aligned_cols=194 Identities=15% Similarity=0.146 Sum_probs=102.6
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCe
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGH 217 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~ 217 (763)
..+++|-|+.+...-|+.|.+..-.. +++..+.-.. .|.+ |+..+ .+-+|+|+|.|-+.+.=+- +|.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g~--------ttG~VvD~G~gvt~~vPI~--eG~ 166 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASGR--------TTGLVVDSGDGVTHVVPIY--EGY 166 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcCC--------eeEEEEEcCCCceeeeecc--ccc
Confidence 46999999999999999888765332 3443433322 3323 55433 4679999999977644332 222
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCC------------CceeEEe
Q 004296 218 MKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN------------AEAPLNI 285 (763)
Q Consensus 218 ~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~------------~~~~i~i 285 (763)
.+...-....+||++++.-|...|.+ .+....... -+.-++.+|+.++.. ....+..
T Consensus 167 -~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~ 235 (372)
T KOG0676|consen 167 -ALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSSLES 235 (372)
T ss_pred -ccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhcccccccccc
Confidence 23333446789999999977777765 121111110 012234444444311 1111111
Q ss_pred ecccCCcceEEEecHHHHH---HHHhhHH-----HHHHHHHHHHHHHc--CCCCCCccEEEEecCCCChHHHHHHHHhhc
Q 004296 286 ECLMDEKDVRGFIKREEFE---ELASGLT-----EKIAIPCRKALADA--GLHVDKIHSVEIVGSGSRIPAITRLLTSLF 355 (763)
Q Consensus 286 ~~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~V~lvGG~srip~v~~~l~~~f 355 (763)
.....|... +.+.-+.|. -+++|-+ .-|...+-..+-++ ++.+.-...|+|+||++-+|++.+++.+..
T Consensus 236 ~y~lPDg~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 236 SYELPDGQK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred cccCCCCCE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHH
Confidence 100112222 344433332 2222211 22223333333332 333334578999999999999999988776
Q ss_pred C
Q 004296 356 G 356 (763)
Q Consensus 356 g 356 (763)
.
T Consensus 315 ~ 315 (372)
T KOG0676|consen 315 Q 315 (372)
T ss_pred h
Confidence 3
No 66
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.39 E-value=0.0028 Score=67.25 Aligned_cols=178 Identities=15% Similarity=0.151 Sum_probs=95.6
Q ss_pred eeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEe-CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHH
Q 004296 169 RLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE-AGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFK 247 (763)
Q Consensus 169 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~ 247 (763)
.+++|.+|-|.+..... |..-.|+|+||-.+-+ +.+. +|.+.-..-..-+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L----- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM----- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHc-----
Confidence 35688888776543322 3344889999987764 5554 3544322222233345444444444333
Q ss_pred hhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCC
Q 004296 248 EQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGL 327 (763)
Q Consensus 248 ~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~ 327 (763)
++++.+ |-..+.+.+....-++...+.-++-.-. -+.--+++++ ++..+...+..-+...+.+.+
T Consensus 315 ---gi~leE-------l~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~reD---IaAGL~~SIA~Rv~s~l~r~~- 379 (432)
T TIGR02259 315 ---NMGLHE-------LGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRED---ILAGLHRAIILRAISIISRSG- 379 (432)
T ss_pred ---CCCHHH-------HHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccc-
Confidence 333211 2223333443333333333333321000 0011233433 333333333333333333321
Q ss_pred CCCCccEEEEecCCCChHHHHHHHHhhcC-----CCCccCCCchhHHhcchHHhh
Q 004296 328 HVDKIHSVEIVGSGSRIPAITRLLTSLFG-----REPRRSLNASECVARGCALQC 377 (763)
Q Consensus 328 ~~~~i~~V~lvGG~srip~v~~~l~~~fg-----~~~~~~~n~~eava~Gaa~~a 377 (763)
.--..|+++||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 380 --~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 --GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred --CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112469999999999999999999994 557788899999999999875
No 67
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.33 E-value=0.0017 Score=69.86 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=85.6
Q ss_pred eeecHHHHHHHHHHHHHHHHHhhcCCCcc-----eEEEEecCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHhhhc
Q 004296 110 HTFCPVQVMGMLFSHLKDVAEKNLEMPVV-----DCVIGVPSYFTDLQRREYLN-AASIAGLRPLRLIHDCTATALGYGI 183 (763)
Q Consensus 110 ~~~~~~~l~a~~L~~l~~~a~~~~~~~~~-----~~VitVP~~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~ 183 (763)
...+..++++.+-+-+.-.....+..+.+ .+|+-||-.|....-+.+.. .....||....++-|+.|+.++.|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34566666655444333333445554433 58999999999877555544 4567899999999999999877665
Q ss_pred cccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHH
Q 004296 184 YKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAA 244 (763)
Q Consensus 184 ~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~ 244 (763)
. .-.|||||+-+|.++.|+-+ . .+.-+.-....||.||++.|+-++.+
T Consensus 275 s----------s~CVVdiGAQkTsIaCVEdG--v-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVEDG--V-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEeecC--c-cccCceEEeccCCchHHHHHHHHHHh
Confidence 3 46899999999999988633 2 22223334578999999999877764
No 68
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=97.24 E-value=0.0024 Score=65.08 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=48.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCceeee---ecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCC
Q 004296 140 CVIGVPSYFTDLQRREYLNAASIAGLRPLRL---IHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (763)
Q Consensus 140 ~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 216 (763)
++||=-.--..+.|.++...-..||==++.- --|+.-|.-..|. ..+.......|+=+|+||||+..|++.-.
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA--~t~Seqr~t~v~NlDIGGGTtN~slFD~G-- 165 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA--QTLSEQRLTRVLNLDIGGGTTNYSLFDAG-- 165 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc--cchhhhhceEEEEEeccCCccceeeeccc--
Confidence 5555544445555665554444554222111 1122222211111 11223456788999999999999997544
Q ss_pred eEEEEEEeCCCCCchHHH
Q 004296 217 HMKVLSHAFDSSLGGRDF 234 (763)
Q Consensus 217 ~~~vl~~~~~~~lGG~~~ 234 (763)
++..++ ..++||+-+
T Consensus 166 --kv~dTa-CLdiGGRLi 180 (473)
T COG4819 166 --KVSDTA-CLDIGGRLI 180 (473)
T ss_pred --ccccce-eeecCcEEE
Confidence 456665 567899755
No 69
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.91 E-value=0.069 Score=58.96 Aligned_cols=215 Identities=17% Similarity=0.114 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCc----eeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC---C----eEEEEE
Q 004296 154 REYLNAASIAGLR----PLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA---G----HMKVLS 222 (763)
Q Consensus 154 ~~l~~Aa~~AGl~----~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~---~----~~~vl~ 222 (763)
....++|+..||. +..-+-+.-|.+++-+.- .+ +-|++=+|-+|+.+.+-.-.. | ....+-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~-------~~-~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~ 303 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA-------QP-GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVL 303 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC-------CC-CeEEEEeccceEEEEecCCceecCccccccccccC
Confidence 4466788999986 233334445555443321 12 334444777777766554321 1 122222
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHHH---------hhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccC---
Q 004296 223 HAFDSSLGGRDFDDVLFGYFAAKFK---------EQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMD--- 290 (763)
Q Consensus 223 ~~~~~~lGG~~~D~~l~~~l~~~~~---------~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~--- 290 (763)
-+.-..=||..-.-.|++||.+... .+++.++. .....++..-+++.+...+-... .+-++.+..
T Consensus 304 Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRs 380 (544)
T COG1069 304 PGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRS 380 (544)
T ss_pred cchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCCcC
Confidence 2223345788888888888876531 11111111 12334455555666655532211 112222111
Q ss_pred ---Ccc-------eEEEecHHHHHHHHhhHHHHH---HHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCC
Q 004296 291 ---EKD-------VRGFIKREEFEELASGLTEKI---AIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR 357 (763)
Q Consensus 291 ---~~d-------~~~~itr~efe~l~~~~~~~i---~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~ 357 (763)
|.+ +++.-+.+.+-.+..-.+.-+ ...|-+++++.|+ .|+.|.++||..+.|.+.+.+.+..|.
T Consensus 381 P~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~ 457 (544)
T COG1069 381 PLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGR 457 (544)
T ss_pred CCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCC
Confidence 111 222233443334433333333 3445566666666 489999999999999999999999998
Q ss_pred CCccCCCchhHHhcchHHhhhhhCCC
Q 004296 358 EPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 358 ~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
++... ..++++++|+|+.|+.-.+.
T Consensus 458 ~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 458 PVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred eEEee-cccchhhhHHHHHHHHHhcc
Confidence 87665 77899999999999876643
No 70
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.67 E-value=0.0016 Score=64.49 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=43.0
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
.++.|+++||.++.|.+.+++.+.||.++....+ .++.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4899999999999999999999999988866544 89999999999874
No 71
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.62 E-value=0.075 Score=52.62 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=112.9
Q ss_pred cceEEEEecCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeC
Q 004296 137 VVDCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
...+.+|=|+-=....|+.|.+. .+.-|+.-+.+--. |+..-|+... -.-+|+|-|.|-|-++-+.-+
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQGL--------~tGvVvDSGDGVTHi~PVye~- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQGL--------LTGVVVDSGDGVTHIVPVYEG- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHhcc--------cceEEEecCCCeeEEeeeecc-
Confidence 34678899988887888888776 57778886554333 3333344321 245899999999988765322
Q ss_pred CeEEEEEE-eCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcCCC-----------CceeE
Q 004296 216 GHMKVLSH-AFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN-----------AEAPL 283 (763)
Q Consensus 216 ~~~~vl~~-~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-----------~~~~i 283 (763)
+ ++.+ .....+.|++++.-|.+.+..+ -|..+-+.+ .+..+..|+.|+-- -++++
T Consensus 170 --~-~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTv 236 (389)
T KOG0677|consen 170 --F-VLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTV 236 (389)
T ss_pred --e-ehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhee
Confidence 1 2211 2346689999999999988764 121111111 13445556555321 11122
Q ss_pred Eeec--ccCCcceEEEecHHHHH---HHHhhHH-----HHHHHHHHHHHHHcCCCC--CCccEEEEecCCCChHHHHHHH
Q 004296 284 NIEC--LMDEKDVRGFIKREEFE---ELASGLT-----EKIAIPCRKALADAGLHV--DKIHSVEIVGSGSRIPAITRLL 351 (763)
Q Consensus 284 ~i~~--l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~V~lvGG~srip~v~~~l 351 (763)
-+++ +.++. .+.+--+.|| .+++|.+ ..+.+++-.+++.+.++. .--.+|+|.||++--|++-..|
T Consensus 237 Lv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRL 314 (389)
T KOG0677|consen 237 LVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRL 314 (389)
T ss_pred eeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHH
Confidence 2222 22332 3455555565 4566543 234455556666654432 1236999999999999988777
Q ss_pred Hhhc
Q 004296 352 TSLF 355 (763)
Q Consensus 352 ~~~f 355 (763)
++.+
T Consensus 315 EkEl 318 (389)
T KOG0677|consen 315 EKEL 318 (389)
T ss_pred HHHH
Confidence 6654
No 72
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.43 E-value=0.53 Score=49.10 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcC-----CCCccCCCchhHHhcchHHhh
Q 004296 305 ELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-----REPRRSLNASECVARGCALQC 377 (763)
Q Consensus 305 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg-----~~~~~~~n~~eava~Gaa~~a 377 (763)
+++....+.+...+..++.+.+..... |+|+||..+.+.+.+.+.+.+. .++.....|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 344455555566666666655433212 9999999999878777755552 345567789999999999876
No 73
>PRK15027 xylulokinase; Provisional
Probab=96.38 E-value=0.0077 Score=68.59 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=61.3
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHh
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~ 376 (763)
..+|.+|-+.+-+-+--....+-+.++..+. .++.|+++||+++++.+.+++.+.||.++....+.+++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467766655443333333333344555453 4788999999999999999999999999966667777899999999
Q ss_pred hhhhCCCc
Q 004296 377 CAMLSPAF 384 (763)
Q Consensus 377 a~~~s~~~ 384 (763)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98765543
No 74
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.03 E-value=0.4 Score=49.30 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=58.3
Q ss_pred cceEEEEecCCCCHHHHH-HHHHHHHHcCCceeeeecchHHHHHhhh---ccccCCCCCCcceEEEEEeCCceeEEEEEE
Q 004296 137 VVDCVIGVPSYFTDLQRR-EYLNAASIAGLRPLRLIHDCTATALGYG---IYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 137 ~~~~VitVP~~~~~~qr~-~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (763)
-..+|+|=|.+--+.-.. ...-..+.-++.. +..-+.|+.+++- ..+.+-....+...+|+|-|.+-|-+.-+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~- 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPV- 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehh-
Confidence 457899999765544333 3333455566654 3333334333333 22111111335689999999998876543
Q ss_pred EeCCeEEEEEEeCCCCCchHHHHHHHHHHHH
Q 004296 213 FEAGHMKVLSHAFDSSLGGRDFDDVLFGYFA 243 (763)
Q Consensus 213 ~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~ 243 (763)
-.|.....+.. -..+||..++..|.+++.
T Consensus 170 -v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 -VKGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred -hcCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 23322222222 457999999999988774
No 75
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.99 E-value=0.016 Score=66.85 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=61.6
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHh
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~ 376 (763)
.-+|..+..++.-+++-+.-.+..+++...-....++.|.++||+++++.+.+++.+.+|.++.+.. ..|+.++|||++
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPY-VNEAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecC-hhHHHHHHHHHH
Confidence 4457666666666666655544444443211112478899999999999999999999999986654 456889999999
Q ss_pred hhhhCCC
Q 004296 377 CAMLSPA 383 (763)
Q Consensus 377 a~~~s~~ 383 (763)
|+.-.+.
T Consensus 488 A~~~~G~ 494 (541)
T TIGR01315 488 GAKAAGT 494 (541)
T ss_pred HHHhcCc
Confidence 9865543
No 76
>PLN02669 xylulokinase
Probab=95.90 E-value=0.017 Score=66.59 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=42.8
Q ss_pred CCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 330 DKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 330 ~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
..++.|+++||+|+.+.+.+.+.+.||.++.+.-. .++.|+|||+.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIFGCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCC-CCchHHHHHHHHHH
Confidence 35789999999999999999999999998865544 47889999999985
No 77
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.82 E-value=0.37 Score=52.80 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=40.4
Q ss_pred cceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHH
Q 004296 292 KDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLT 352 (763)
Q Consensus 292 ~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~ 352 (763)
..-.+.||..+++++. ---..+..-++-.|+++|++.+||+.|+|.||++.-=-+.+++.
T Consensus 289 ~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 3446789999997652 22345566677888999999999999999999988766666654
No 78
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.79 E-value=0.015 Score=52.54 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=28.4
Q ss_pred EEEEEeCCceeEEEEEEEe-CCeEEEEEEeCCCCCc--hHHHH--HHHHHHHH
Q 004296 196 IAFVDIGHSDTQVSIVSFE-AGHMKVLSHAFDSSLG--GRDFD--DVLFGYFA 243 (763)
Q Consensus 196 vlv~D~GggT~dvsv~~~~-~~~~~vl~~~~~~~lG--G~~~D--~~l~~~l~ 243 (763)
|+++|+|++++.+.+++.. .+.+.+++.+....-| |.++. ..+..-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999873 3445555443222221 77777 66665554
No 79
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.57 E-value=0.035 Score=64.05 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=58.9
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhhcCCCCccCCCchhHHhcchHH
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~-srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~ 375 (763)
.-+|.+|-+.+-+-+---...+-+.|+..|. .++.|.++||+ ++.+.+.+++.+.||.++.+..+ .|+.|+|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHHH
Confidence 3456665555443333233333344454453 47899999999 99999999999999999866655 4688999999
Q ss_pred hhhhhCCC
Q 004296 376 QCAMLSPA 383 (763)
Q Consensus 376 ~a~~~s~~ 383 (763)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
No 80
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.13 Score=57.32 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCC
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
-+.-++..+|+.+-.+.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++.++.+++. ++.|||+.|+..++.
T Consensus 395 ai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 395 AIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333444444444444433 46788999999999999999999999999999888877 999999999988875
No 81
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.53 E-value=0.18 Score=52.25 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=86.4
Q ss_pred CcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHH
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKL 271 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~ 271 (763)
.-..++++++|.| +|++.+....+ .-.. +..+||-.|= -|+..|... .+. ..|.+.|++-
T Consensus 99 ~~~p~llvnIGsG---vSi~~v~~~~~--~Rv~-Gt~iGGGTf~-GL~~LL~~~----------~~~---~el~~lA~~G 158 (279)
T TIGR00555 99 DIYPYLLVNIGTG---TSILYVDGDNY--ERVG-GTSLGGGTFL-GLGKLLTGI----------QTF---DELLEMAQHG 158 (279)
T ss_pred CCCceEEEEecCC---eEEEEEcCccE--EEEc-CccccHHHHH-HHHHHHcCC----------CCH---HHHHHHHHcC
Confidence 3457899999987 67777765532 2223 4568886665 677666410 111 2222333221
Q ss_pred hhhcCCCCceeEEeecccCC----cce-----------------EEEecHHHHHHHHhhHHHHHHHHHHHHHH-HcCCCC
Q 004296 272 KKVLSANAEAPLNIECLMDE----KDV-----------------RGFIKREEFEELASGLTEKIAIPCRKALA-DAGLHV 329 (763)
Q Consensus 272 K~~Ls~~~~~~i~i~~l~~~----~d~-----------------~~~itr~efe~l~~~~~~~i~~~i~~~l~-~~~~~~ 329 (763)
.+...++.+..++.+ ..+ .-.+++ |+++..++.-+...|-..-. .+. .
T Consensus 159 -----~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~---eDiAaSLl~mV~~nIg~lA~~~a~--~ 228 (279)
T TIGR00555 159 -----DRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSP---EDIAASLLGLIGNNIGQIAYLCAL--R 228 (279)
T ss_pred -----CCcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCCH---HHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 122233334333331 000 011223 34444455444443322111 111 2
Q ss_pred CCccEEEEecC-CCChHHHHHHHHhhcC---CCCccCCCchhHHhcchHH
Q 004296 330 DKIHSVEIVGS-GSRIPAITRLLTSLFG---REPRRSLNASECVARGCAL 375 (763)
Q Consensus 330 ~~i~~V~lvGG-~srip~v~~~l~~~fg---~~~~~~~n~~eava~Gaa~ 375 (763)
..+..|+++|| .+..|.+++.+...+. .+...+.|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35788999999 6779999999988874 5667778999999999986
No 82
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.46 E-value=0.029 Score=64.16 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=44.6
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCC
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
.++.|.++||++++|.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcCc
Confidence 47889999999999999999999999988554 45678899999999876553
No 83
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.072 Score=56.00 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Q 004296 622 FASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPP 701 (763)
Q Consensus 622 ~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~ 701 (763)
.++|++ |..++++++.+-.+|. .+..|...+.+...-.=+|++.+..-.+....+++
T Consensus 539 rLt~Ed---IerMv~eAekFAeeDk--------------------~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~ 595 (663)
T KOG0100|consen 539 RLTPED---IERMVNEAEKFAEEDK--------------------KLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSD 595 (663)
T ss_pred CCCHHH---HHHHHHHHHHHhhhhH--------------------HHHHHHHhHHHHHHHHHHhhhccCchhHhcccCCh
Confidence 356654 5567778887776652 11122222222222223444455555555556999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcC
Q 004296 702 EEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 702 ~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~ 758 (763)
+++..+.+.+++...||++. +--..+|.+.|.++|+..|+||..+
T Consensus 596 edKe~~e~av~e~~eWL~~n------------~~a~~Ee~~ek~kele~vv~Piisk 640 (663)
T KOG0100|consen 596 EDKETIEDAVEEALEWLESN------------QDASKEEFKEKKKELEAVVQPIISK 640 (663)
T ss_pred hHHHHHHHHHHHHHHHHhhc------------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983 3334589999999999999999854
No 84
>PLN02295 glycerol kinase
Probab=95.40 E-value=0.044 Score=62.86 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=44.7
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCC
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
.++.|.++||+++.|.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 57889999999999999999999999998544 55678899999999866554
No 85
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.34 E-value=0.029 Score=64.11 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=56.6
Q ss_pred EecHHHHHHHHh-hHHHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchH
Q 004296 297 FIKREEFEELAS-GLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCA 374 (763)
Q Consensus 297 ~itr~efe~l~~-~~~~~i~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa 374 (763)
.-+|.++-..+- .+.-.+...+ +.|+.. +. .++.|.++||+++.+.+.+++.+.||.++.. .+..|+.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHH
Confidence 335655554433 2333333333 333332 43 4788999999999999999999999999865 455678899999
Q ss_pred HhhhhhCCC
Q 004296 375 LQCAMLSPA 383 (763)
Q Consensus 375 ~~a~~~s~~ 383 (763)
+.|+.-.+.
T Consensus 442 ~~a~~~~G~ 450 (493)
T TIGR01311 442 YAAGLAVGY 450 (493)
T ss_pred HHHHhhcCc
Confidence 999866553
No 86
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.31 E-value=0.045 Score=62.33 Aligned_cols=52 Identities=27% Similarity=0.453 Sum_probs=45.3
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCC
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
.++.|.++||+++.+.+.+++.+.||.++... ...++.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHHHHHHhcCC
Confidence 47899999999999999999999999988655 46678999999999876554
No 87
>PRK04123 ribulokinase; Provisional
Probab=95.18 E-value=0.038 Score=64.05 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=47.3
Q ss_pred HHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCC
Q 004296 320 KALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSP 382 (763)
Q Consensus 320 ~~l~~~~~~~~~i~~V~lvGG~-srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~ 382 (763)
+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.++.+. ...|+.|+|||+.|+.-.+
T Consensus 430 e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 430 ECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEec-CccccchHHHHHHHHHHhc
Confidence 34444443 47889999999 999999999999999988554 4567889999999987554
No 88
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.15 E-value=0.063 Score=60.63 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=57.4
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHH
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~ 375 (763)
.-+|.++-+.+-+-+.-....+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.++... . .|+.|+|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 34666665544333332223333344442 43 47889999999999999999999999998543 3 6799999999
Q ss_pred hhhhhCCCc
Q 004296 376 QCAMLSPAF 384 (763)
Q Consensus 376 ~a~~~s~~~ 384 (763)
.|+.-.+.+
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998765543
No 89
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.05 E-value=0.047 Score=62.47 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=44.6
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCC
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
.++.|.++||+++.+.+.+++.+.||.++... ...|+.++|||+.|+.-.+.
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~-~~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVP-EMAETTALGAALLAGLAVGV 457 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEec-CcccchHHHHHHHHHhhcCc
Confidence 37889999999999999999999999998655 45668899999999866553
No 90
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.00 E-value=0.077 Score=60.09 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=55.8
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhh
Q 004296 299 KREEFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (763)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 377 (763)
+|.+|-+.+-+-+.--...+-+.|+.. +. .++.|.++||++|.+.+.+++.+.+|.++.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 565555444333332223333344432 43 478899999999999999999999999985543 379999999999
Q ss_pred hhhCCCc
Q 004296 378 AMLSPAF 384 (763)
Q Consensus 378 ~~~s~~~ 384 (763)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8766543
No 91
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.91 E-value=0.62 Score=53.05 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHhh-hccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCch
Q 004296 153 RREYLNAASIAGLRPLRLIHDCTATALGY-GIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (763)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 231 (763)
...+.++-+..|+++ ++|+-..=|-+.| |+... ++. ....+|+|+|||+|.++++. ++.+ .. ....++|.
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~~--~~~~lviDIGGGStEl~~~~--~~~~--~~-~~Sl~lG~ 164 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TGG--ADQRLVVDIGGASTELVTGT--GAQA--TS-LFSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cCC--CCCEEEEEecCCeeeEEEec--CCce--ee-eeEEeccc
Confidence 445556666779996 5665555554444 44432 332 34689999999999999875 3332 21 22467888
Q ss_pred HHHHHHHH
Q 004296 232 RDFDDVLF 239 (763)
Q Consensus 232 ~~~D~~l~ 239 (763)
-.+.+.+.
T Consensus 165 vrl~e~f~ 172 (496)
T PRK11031 165 VTWLERYF 172 (496)
T ss_pred hHHHHHhc
Confidence 77665543
No 92
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.80 E-value=0.082 Score=60.80 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=55.4
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHH-cCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhh
Q 004296 299 KREEFEELASGLTEKIAIPCRKALAD-AGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (763)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l~~-~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 377 (763)
+|.++-+.+-+-+--....+-+.+++ .+. .++.|.++||+++.+.+.+++.+.||.++.... ..++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPV-VKEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEec-ccCchHHHHHHHH
Confidence 55555444333222222223333443 243 478899999999999999999999999996655 4468899999999
Q ss_pred hhhCCC
Q 004296 378 AMLSPA 383 (763)
Q Consensus 378 ~~~s~~ 383 (763)
+.-.+.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 866543
No 93
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.76 E-value=0.033 Score=58.62 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=12.4
Q ss_pred HHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCC-CCccCCCchhHHhcchHH
Q 004296 306 LASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-EPRRSLNASECVARGCAL 375 (763)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~-~~~~~~n~~eava~Gaa~ 375 (763)
+++-..+++.+.|+......+..+.+. .++.+||.+ |++...|.+.+|. .+..+..+.-+-|+||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 333444555555555544456655443 355556665 7788888888885 455555678889999975
No 94
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.58 E-value=0.077 Score=56.92 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=46.9
Q ss_pred CCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 326 GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 326 ~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
|........|++|||.||...|-+.|.+.||.++... +..+++|+|+|+.|+.
T Consensus 437 g~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 437 GFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 5666678899999999999999999999999988655 8889999999999864
No 95
>PRK10854 exopolyphosphatase; Provisional
Probab=94.53 E-value=0.63 Score=53.28 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHhh-hccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCch
Q 004296 153 RREYLNAASIAGLRPLRLIHDCTATALGY-GIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (763)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG 231 (763)
...+.++-+..|+++ .+|+...=|.+.| |+.. .++. ....+|+|+|||+|.++++. ++.+... .+ .++|.
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~~--~~~~lvvDIGGGStEl~~~~--~~~~~~~-~S--~~lG~ 169 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQPE--KGRKLVIDIGGGSTELVIGE--NFEPILV-ES--RRMGC 169 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccCC--CCCeEEEEeCCCeEEEEEec--CCCeeEe-EE--Eecce
Confidence 344445556679986 5666555555544 4433 2322 35689999999999999875 3322211 11 26776
Q ss_pred HHHHHHH
Q 004296 232 RDFDDVL 238 (763)
Q Consensus 232 ~~~D~~l 238 (763)
-.+.+.+
T Consensus 170 vrl~e~f 176 (513)
T PRK10854 170 VSFAQLY 176 (513)
T ss_pred eeHHhhh
Confidence 6665543
No 96
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.22 Score=49.59 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEe
Q 004296 122 FSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDI 201 (763)
Q Consensus 122 L~~l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~ 201 (763)
..++++..+..++.++ .++++-..|... +++++--..| || +|.....-+....++.+++||+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vA-------------Aa-NW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVA-------------AA-NWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHH-------------Hh-hhHHHHHHHHHhcCCceEEEec
Confidence 4556666677776555 788888888764 2222211111 11 1111110001134577999999
Q ss_pred CCceeEEEEEE
Q 004296 202 GHSDTQVSIVS 212 (763)
Q Consensus 202 GggT~dvsv~~ 212 (763)
|+.|+|+--+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987654
No 97
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=94.40 E-value=4.3 Score=42.71 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=31.0
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCC-------CCccCCCchhHHhcchHHhhh
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGR-------EPRRSLNASECVARGCALQCA 378 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~-------~~~~~~n~~eava~Gaa~~a~ 378 (763)
+++.|+|-||.+..+.+.+.+++.+.. ++....-.+.+.++|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 467888888877666655666655531 122333457788999998763
No 98
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.9 Score=51.12 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEE
Q 004296 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (763)
-..+..+-+..|+++--+=-|-+|--..+|+-.. ++ .....+|+|+|||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~--~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LP--RKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CC--CCCCEEEEEecCCeEEEEEec
Confidence 3557777788899864444455554444444332 22 167899999999999999986
No 99
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.04 E-value=0.43 Score=52.40 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=62.8
Q ss_pred ceEEEEecCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCC
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~ 216 (763)
..+++|=+..=...+|+.|.+.. +.-|++.+.+=-+.. |.++.. .........+|+++|..+|-|-.+- +|
T Consensus 117 hPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~hN-~~~~~~~~~liis~g~~~T~vipvl--dG 188 (645)
T KOG0681|consen 117 HPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYHN-YGKSSNKSGLIISMGHSATHVIPVL--DG 188 (645)
T ss_pred CCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhhc-cCcccCcceEEEecCCCcceeEEEe--cC
Confidence 34788887776667888887764 666887655422221 111111 1112233689999999999876653 44
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 004296 217 HMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (763)
Q Consensus 217 ~~~vl~~~~~~~lGG~~~D~~l~~~l~~~ 245 (763)
.. ++....-.++||.....-|.+.|..+
T Consensus 189 ~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 189 RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 43 34444568899999888777777654
No 100
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=93.59 E-value=0.61 Score=45.64 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHH
Q 004296 151 LQRREYLNAASIAGLRPLRLIHDCTATAL 179 (763)
Q Consensus 151 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal 179 (763)
...+.+.++++.|||.+..++.+|.|++.
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 45678889999999999999999999874
No 101
>PTZ00297 pantothenate kinase; Provisional
Probab=92.53 E-value=6.8 Score=50.32 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=43.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecC-CCChHHHHHHHHhhc-----C-CCCccCCCchhHHhcchHHh
Q 004296 304 EELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGS-GSRIPAITRLLTSLF-----G-REPRRSLNASECVARGCALQ 376 (763)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG-~srip~v~~~l~~~f-----g-~~~~~~~n~~eava~Gaa~~ 376 (763)
++++..++.-|..-|-+.---. -...+++.|+++|+ -...|...+.|...+ | ......-+....-|+||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~l~-a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAYLH-SRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 3445555555544443321111 12336899999999 455888888887665 2 33344456677889999865
Q ss_pred h
Q 004296 377 C 377 (763)
Q Consensus 377 a 377 (763)
.
T Consensus 1444 ~ 1444 (1452)
T PTZ00297 1444 D 1444 (1452)
T ss_pred C
Confidence 4
No 102
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.20 E-value=0.49 Score=49.78 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHHHcCCceeeeecchHHHHHhh-hccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHH
Q 004296 156 YLNAASIAGLRPLRLIHDCTATALGY-GIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDF 234 (763)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 234 (763)
+...-+..|+++ .+|+...=|.+.| +... .+ ......+++|+|||+|.+++++ ++.+ .... ..++|.-.+
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l--~~~~~~lviDIGGGStEl~~~~--~~~~--~~~~-Sl~lG~vrl 147 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLS-SL--PPDKNGLVIDIGGGSTELILFE--NGKV--VFSQ-SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HS--TTTSSEEEEEEESSEEEEEEEE--TTEE--EEEE-EES--HHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hc--cccCCEEEEEECCCceEEEEEE--CCee--eEee-eeehHHHHH
Confidence 444445679986 5555554444444 3322 22 2356789999999999988875 3333 2222 468999888
Q ss_pred HHHH
Q 004296 235 DDVL 238 (763)
Q Consensus 235 D~~l 238 (763)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 103
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=91.42 E-value=0.78 Score=54.20 Aligned_cols=49 Identities=12% Similarity=0.349 Sum_probs=41.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcC
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~ 758 (763)
.++++++..+.+.+++++.||++ +..-+..++..|+++|...+++++.+
T Consensus 563 ~~t~ee~~~l~~~l~~~~~wL~~------------~~~~~~~~~~~kl~eL~~~~~pi~~r 611 (653)
T PTZ00009 563 KLSDSDKATIEKAIDEALEWLEK------------NQLAEKEEFEHKQKEVESVCNPIMTK 611 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc------------CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999975 11235689999999999999999854
No 104
>PF13941 MutL: MutL protein
Probab=91.35 E-value=1.7 Score=48.22 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=28.8
Q ss_pred EEEEEccccceEEEEEe--CCceEEEeCCCCCccceeEEEEcCCceEEc
Q 004296 3 VVGFDIGNENCVIATVK--HRGVDVLLNEESNRETPSIVCFGEKQRFIG 49 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~--~~~~~ii~n~~~~r~~ps~v~~~~~~~~~G 49 (763)
++-+|||||||++..++ .+..+++ |.-..||-| ..+....|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~~Dv~~G 44 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EPGDVTIG 44 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--CcccHHHH
Confidence 68899999999999988 6666666 334557766 22344455
No 105
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=90.79 E-value=7.6 Score=41.38 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCCcceEEEEecCCCCHHH------------HHHHHHHH-HHcCCceeeeecchHHHH
Q 004296 114 PVQVMGMLFSHLKDVAEKN--LEMPVVDCVIGVPSYFTDLQ------------RREYLNAA-SIAGLRPLRLIHDCTATA 178 (763)
Q Consensus 114 ~~~l~a~~L~~l~~~a~~~--~~~~~~~~VitVP~~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aaa 178 (763)
+++++..+...+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 3444444444444433322 11345667888886553211 11233333 334776 57999999999
Q ss_pred HhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 179 LGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 179 l~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
++-...... ...++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~---~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAG---KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhccc---CCCCcEEEEEeCCcc-EEEEE
Confidence 876543321 234688999999875 55555
No 106
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=90.28 E-value=0.24 Score=54.31 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCCC--CccEEEEecCCCChHHHHHHHHhhc------C--CCCccCCCchhHHhcchHHhhhh
Q 004296 313 KIAIPCRKALADAGLHVD--KIHSVEIVGSGSRIPAITRLLTSLF------G--REPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 313 ~i~~~i~~~l~~~~~~~~--~i~~V~lvGG~srip~v~~~l~~~f------g--~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
.|.+++...|.+.-.+.. -+..|+|+||+|.+|++.+.|...+ | ..|.+..||-..+=+||+.+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 344555555655422222 2789999999999999999998876 2 23456778999999999999986
No 107
>PRK09604 UGMP family protein; Validated
Probab=89.74 E-value=26 Score=37.60 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=36.5
Q ss_pred CccEEEEecCCCChHHHHHHHHhhc---CCCCccCC---CchhHHhcchHHhh
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARGCALQC 377 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~f---g~~~~~~~---n~~eava~Gaa~~a 377 (763)
+++.|+|.||.+....+++.|.+.+ |.++..+. -.|.+++.|+|=+-
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999988 44443332 45889999997443
No 108
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=89.69 E-value=1.4 Score=51.93 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=40.1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.+++++++.+.+.+++++.||++. ..++++.|+++|+..+++++.
T Consensus 549 ~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k~~~L~~~~~~~~~ 593 (627)
T PRK00290 549 KVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAKTEELTQASQKLGE 593 (627)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999862 358999999999999999884
No 109
>PRK09557 fructokinase; Reviewed
Probab=89.63 E-value=30 Score=36.49 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=29.2
Q ss_pred cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
.|++ +.+.|+..|+|++-.+.... ...++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccc-eEEEEE
Confidence 3776 57999999999876443221 23467888888855 444444
No 110
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=89.56 E-value=2.1 Score=46.17 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCcc----CCCchhHHhcchHHhhhh
Q 004296 310 LTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRR----SLNASECVARGCALQCAM 379 (763)
Q Consensus 310 ~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~----~~n~~eava~Gaa~~a~~ 379 (763)
+..-+...|-+.+.... ...+.|+++||+++.|.+.+.|++.++.++.. .++++.-=|..-|++|..
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33333444555554432 23468999999999999999999999633321 134443334445666653
No 111
>PRK13411 molecular chaperone DnaK; Provisional
Probab=89.42 E-value=1.8 Score=51.13 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=40.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.++++++..+.+.+++++.||.+ ++ ...++++.++++|+..+.+++.
T Consensus 551 ~~~~~er~~i~~~l~~~~~wL~~------------~~-~~~~~~~~~~~el~~~~~~i~~ 597 (653)
T PRK13411 551 LISEELKQRAEQKVEQLEAALTD------------PN-ISLEELKQQLEEFQQALLAIGA 597 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc------------CC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999965 11 2558999999999999999884
No 112
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.93 E-value=5.2 Score=42.42 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=38.6
Q ss_pred CCccEEEEecCCCChHHHHHHHHhhcCC----CCccCCCc----hhHHhcchHHhhhhhCCC
Q 004296 330 DKIHSVEIVGSGSRIPAITRLLTSLFGR----EPRRSLNA----SECVARGCALQCAMLSPA 383 (763)
Q Consensus 330 ~~i~~V~lvGG~srip~v~~~l~~~fg~----~~~~~~n~----~eava~Gaa~~a~~~s~~ 383 (763)
.+.+.|+|.|-.+|+|-+.+.+.+.|+. ++ ..+.+ -..+|.|+|+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 3678899999999999998888877742 22 12222 234799999999877654
No 113
>PLN02666 5-oxoprolinase
Probab=88.65 E-value=3.9 Score=51.46 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=49.3
Q ss_pred ecHHHHHHHHhhHH-HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCC-CccCCCchhHHhcchHH
Q 004296 298 IKREEFEELASGLT-EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGRE-PRRSLNASECVARGCAL 375 (763)
Q Consensus 298 itr~efe~l~~~~~-~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~-~~~~~n~~eava~Gaa~ 375 (763)
++-++...-+..+. ..+...|.......|+++.+.. ++..||++ |...-.|.+.+|.+ +..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~-l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHA-LACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCce-EEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444333333 3444566666666677765533 55555554 77788899999965 77888999999999975
Q ss_pred h
Q 004296 376 Q 376 (763)
Q Consensus 376 ~ 376 (763)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 114
>PRK09698 D-allose kinase; Provisional
Probab=88.51 E-value=36 Score=35.89 Aligned_cols=43 Identities=7% Similarity=-0.081 Sum_probs=28.6
Q ss_pred cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
.|++ +.+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~----~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN----LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC----CCCceEEEEEecCc-eEEEEE
Confidence 4776 5799999999876443221 22358888899876 444554
No 115
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=88.33 E-value=36 Score=39.31 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=37.4
Q ss_pred ccEEEEecCCCChHHHHHHHHhhc---CCCCccCC---CchhHHhcchHHhhhhhC
Q 004296 332 IHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARGCALQCAMLS 381 (763)
Q Consensus 332 i~~V~lvGG~srip~v~~~l~~~f---g~~~~~~~---n~~eava~Gaa~~a~~~s 381 (763)
+..|+|+||.+...++++.|.+.+ |.++..+. -.|.+++.|++.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 567999999999999999999665 44443332 468899999887655443
No 116
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=87.47 E-value=2.7 Score=44.57 Aligned_cols=75 Identities=19% Similarity=0.096 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHH
Q 004296 155 EYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDF 234 (763)
Q Consensus 155 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~ 234 (763)
.+...-+..|+++ ++|+...=|.+.|.--...++. ...+++|+|||+|.++++. ++.+ .. ....++|...+
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~v~DiGGGSte~~~~~--~~~~--~~-~~Sl~lG~vrl 160 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGLVVDIGGGSTELILGK--DFEP--GE-GVSLPLGCVRL 160 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcEEEEecCCeEEEEEec--CCCE--eE-EEEEccceEEh
Confidence 3334445679986 6777777666666322222221 2249999999999999865 3322 11 12356676666
Q ss_pred HHHH
Q 004296 235 DDVL 238 (763)
Q Consensus 235 D~~l 238 (763)
.+.+
T Consensus 161 ~e~f 164 (300)
T TIGR03706 161 TEQF 164 (300)
T ss_pred HHhh
Confidence 5543
No 117
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=87.29 E-value=2.5 Score=49.49 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=39.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcC
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~ 758 (763)
.+++++++.+.+.+++++.||++. ...+++.+.++|+..+++++.+
T Consensus 547 ~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~~~~l~~~~~~~~~~ 592 (595)
T TIGR02350 547 KLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAKTEELQQALQKLAEA 592 (595)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999862 2268999999999999998754
No 118
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=2 Score=49.16 Aligned_cols=60 Identities=15% Similarity=0.476 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcC
Q 004296 684 DLLQCIVEYRTAVGSLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 684 ~l~~~l~~~~~~~~~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~ 758 (763)
.++..+.... ..|.++++.++.+.|+++..||+.. +.....+++.|.++|+..|+|++.+
T Consensus 552 ~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~------------~~~~~~e~e~k~~el~~~~~p~~~~ 611 (620)
T KOG0101|consen 552 NMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKN------------QLAEKEEFEHKQKELELVCNPIISK 611 (620)
T ss_pred hhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhc------------ccccccHHHHHHHHHHhhccHHHHh
Confidence 3344444333 5599999999999999999999872 2222689999999999999999965
No 119
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.98 E-value=4.4 Score=46.67 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=62.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhcC------CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHH
Q 004296 668 IENRYKDGEARAQATRDLLQCIVEYRTAVGS------LPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDI 741 (763)
Q Consensus 668 i~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~------i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di 741 (763)
+..+=.+..+|..|.+.|...|-.....+.. .+++|+..|.+.+.....||.+-..++.+ .++
T Consensus 649 ~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t-----------~~~ 717 (902)
T KOG0104|consen 649 FVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPT-----------EML 717 (902)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccch-----------hHH
Confidence 3355566778888888888888777766555 78899999999999999999997743332 688
Q ss_pred HHHHHHHHHHHHhhhc
Q 004296 742 KRRTEDLKLKCQHLLK 757 (763)
Q Consensus 742 ~~k~~~l~~~~~~l~~ 757 (763)
..|+.+|+..++.+..
T Consensus 718 ~ek~a~L~~l~~~~~~ 733 (902)
T KOG0104|consen 718 TEKLAELKKLETSKNF 733 (902)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 8888889888887663
No 120
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=85.55 E-value=0.74 Score=39.56 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.4
Q ss_pred CeEEEEEccccceEEEEEeCC
Q 004296 1 MSVVGFDIGNENCVIATVKHR 21 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~ 21 (763)
|.++|||+|.|++++|+++..
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 779999999999999998644
No 121
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=84.72 E-value=2.3 Score=46.67 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=58.4
Q ss_pred ecHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHh
Q 004296 298 IKREEFEELA-SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (763)
Q Consensus 298 itr~efe~l~-~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~ 376 (763)
.++++|-+.. +.+.-+...+++..-++++. .+..+-+=||.++..++.+...+.+|.++.++.+ .|+.|+|||+.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 3455544332 22333444444444444554 5788999999999999999999999999887754 67889999999
Q ss_pred hhhhCCCc
Q 004296 377 CAMLSPAF 384 (763)
Q Consensus 377 a~~~s~~~ 384 (763)
|..-.+.+
T Consensus 447 AGla~G~w 454 (499)
T COG0554 447 AGLAVGFW 454 (499)
T ss_pred HhhhhCcC
Confidence 98776643
No 122
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=7.7 Score=41.31 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=88.8
Q ss_pred CcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccc--cccHHHHHHHHHHHH
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINV--YSNVRACIRLRAACE 269 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~--~~~~~~~~rL~~~ae 269 (763)
.+...+|+++|| ++-+.+-.+.-.|++. |.--|-.-+|..+..+..+.|.+.-..-. .-+.....+|+
T Consensus 161 ~~~~r~vlNiGG----IaNlt~l~~~~~v~g~--DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll---- 230 (371)
T COG2377 161 PRERRAVLNIGG----IANLTYLPPGGPVLGF--DTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL---- 230 (371)
T ss_pred CCCCeEEEeccc----eEEEEecCCCCceeee--ecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh----
Confidence 357899999998 4444443332256655 56778888999888877655432111000 01112222222
Q ss_pred HHhhhcCCCCceeEEeecccCCcceEEE-----------ecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEe
Q 004296 270 KLKKVLSANAEAPLNIECLMDEKDVRGF-----------IKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIV 338 (763)
Q Consensus 270 ~~K~~Ls~~~~~~i~i~~l~~~~d~~~~-----------itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lv 338 (763)
...-|+...... .+-.+|... ++.+++..-...+. .. .+++....-..+.+.++++
T Consensus 231 -~~p~F~~~~PkS------tgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~elt---A~---tIv~s~~~~~~~p~~l~vc 297 (371)
T COG2377 231 -AHPYFALPAPKS------TGRELFNLQWLEQHLDDTQLLNAEDVQATLVELT---AA---TIVKSVATLQGDPRRLVVC 297 (371)
T ss_pred -hCCcccCCCccc------CCccccchhhHHHHHhhccCCCHHHHHHHHHHHH---HH---HHHHHHhhccCCCceeEee
Confidence 223333221110 111122211 33333332222111 11 1222223344567899999
Q ss_pred cCCCChHHHHHHHHhhc-CCCCc----cCCCchhHHhcchHHhhhhh
Q 004296 339 GSGSRIPAITRLLTSLF-GREPR----RSLNASECVARGCALQCAML 380 (763)
Q Consensus 339 GG~srip~v~~~l~~~f-g~~~~----~~~n~~eava~Gaa~~a~~~ 380 (763)
||+.+.|.+.+.|...+ |..|. ..+++|.-=|.+-|++|...
T Consensus 298 GGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 298 GGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 99999999999999999 54443 24567766677777777654
No 123
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=84.28 E-value=4.6 Score=47.86 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=40.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcC
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~ 758 (763)
.+++++++.+.+.+++++.||++. ...+++.+.++|+..+.++..+
T Consensus 590 ~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k~~eL~~~l~~l~~k 635 (663)
T PTZ00400 590 KISDADKDELKQKITKLRSTLSSE---------------DVDSIKDKTKQLQEASWKISQQ 635 (663)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999751 2489999999999999998853
No 124
>PRK14878 UGMP family protein; Provisional
Probab=83.34 E-value=68 Score=34.28 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=29.8
Q ss_pred CccEEEEecCCCChHHHHHHHHhhc---CCCCccCC---CchhHHhc
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVAR 371 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~f---g~~~~~~~---n~~eava~ 371 (763)
.+..|+|+||.+...++++.+.+.+ |.++..+. -.|.+++.
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3677999999999999999999877 44443332 23566655
No 125
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=82.78 E-value=1.3 Score=40.67 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.1
Q ss_pred CeEEEEEccccceEEEEEeCCc
Q 004296 1 MSVVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~~ 22 (763)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999987654
No 126
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=81.63 E-value=14 Score=37.62 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=58.8
Q ss_pred CCCcceEEE--EecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 134 EMPVVDCVI--GVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 134 ~~~~~~~Vi--tVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
+..+..++. .+|.+||.- +++++++.-.|.+. -+++-..||.+....+.. ......++++|+|-|+|-+.++
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~---v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE---VSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChh---hhccCCeEEEEeCCccEEEEEE
Confidence 456777888 899987742 45556665555555 445555555444433221 1335789999999999998887
Q ss_pred EEeCCeEEEEEEeCCCCCchHHHHHHH
Q 004296 212 SFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (763)
Q Consensus 212 ~~~~~~~~vl~~~~~~~lGG~~~D~~l 238 (763)
.++++.=+.......+-...+...|
T Consensus 185 --~~~rI~GvfEHHT~~l~~~kL~~~l 209 (254)
T PF08735_consen 185 --KDGRIYGVFEHHTGMLTPEKLEEYL 209 (254)
T ss_pred --eCCEEEEEEecccCCCCHHHHHHHH
Confidence 4555444444444455555444443
No 127
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=81.52 E-value=78 Score=33.69 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=34.2
Q ss_pred CccEEEEecCCCChHHHHHHHHhhc---CCCCccCC---CchhHHhcchH
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARGCA 374 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~f---g~~~~~~~---n~~eava~Gaa 374 (763)
.++.|+|.||.+....+.+.|.+.+ |.++..+. -.|.+++.|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999887 44433332 35888888886
No 128
>CHL00094 dnaK heat shock protein 70
Probab=81.09 E-value=7.1 Score=45.95 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=38.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.++++++..+.+.+++++.||.+. + ..+++.+.++|+..+++++.
T Consensus 551 ~~~~~~~~~~~~~l~~~~~wl~~~-----------~----~~~~~~~~~~l~~~~~~~~~ 595 (621)
T CHL00094 551 KISEEKKEKIENLIKKLRQALQND-----------N----YESIKSLLEELQKALMEIGK 595 (621)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999862 1 17899999999999998874
No 129
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=1.1e+02 Score=34.79 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=55.1
Q ss_pred EecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHH-HHHHhhcCCCCccCC-CchhHHhcchH
Q 004296 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAIT-RLLTSLFGREPRRSL-NASECVARGCA 374 (763)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~-~~l~~~fg~~~~~~~-n~~eava~Gaa 374 (763)
.....+|-..++..++++.--+-+.+.+.. ....+.+.||....-..- +.+.+-+..++.... -.|.-.|.|||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHH
Confidence 344456666667777777666655555432 156799999988877666 677777666665444 34778999999
Q ss_pred HhhhhhC
Q 004296 375 LQCAMLS 381 (763)
Q Consensus 375 ~~a~~~s 381 (763)
+++...-
T Consensus 331 l~~~~~~ 337 (555)
T COG2192 331 LAVKREL 337 (555)
T ss_pred HHHHHHh
Confidence 9887543
No 130
>PRK07058 acetate kinase; Provisional
Probab=80.29 E-value=8.8 Score=41.72 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhhcC
Q 004296 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFG 356 (763)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~fg 356 (763)
++-++.++.+.|-......| .+|.|+++||-+ ..+.|++.|.+.++
T Consensus 298 ~d~f~yri~k~IGa~~a~Lg----~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATLG----GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34455556555555444333 699999999999 99999999998874
No 131
>PLN02939 transferase, transferring glycosyl groups
Probab=79.00 E-value=53 Score=40.15 Aligned_cols=173 Identities=9% Similarity=0.078 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh--hhccCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Q 004296 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS--TYRSFASDQEREGISRSLQETEEWLYDDGDDE 649 (763)
Q Consensus 572 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~--~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a 649 (763)
+-+++++.++.++...+.-|+....++..+.-|++++-++..++-. +-...+++-+-+.+-++++.++.-|..-...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888899999999999999999999999999999998842 11112233333345555555555554211011
Q ss_pred --------CHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc---chhhHHHHHHHHHHHHH
Q 004296 650 --------TANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPP---EEQDFIISECYKAEQWL 718 (763)
Q Consensus 650 --------~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~---~e~~~v~~~~~~~~~Wl 718 (763)
.-.++.+|.+.|+... .+..-++-++..++.+|+.+...+..+..-++ .+++--...++++++-|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASL----KEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTL 392 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHH----HHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555555555433 34555667888888888888776665544111 23444556677777777
Q ss_pred HHHHHHhhc----CCCCCCCceeHHHHHHHHHHH
Q 004296 719 REIAQQQDS----LPKNTDPILWSGDIKRRTEDL 748 (763)
Q Consensus 719 ~~~~~~q~~----~~~~~dP~~~~~di~~k~~~l 748 (763)
+....++++ .|.++-|.-.+.+|.-+++.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 393 SKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 776666666 345555655555666555544
No 132
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=78.43 E-value=9.4 Score=39.62 Aligned_cols=174 Identities=18% Similarity=0.153 Sum_probs=94.2
Q ss_pred ecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCC----CCCchHHHHHHHHHHHHHHH
Q 004296 171 IHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFD----SSLGGRDFDDVLFGYFAAKF 246 (763)
Q Consensus 171 i~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~----~~lGG~~~D~~l~~~l~~~~ 246 (763)
+..|+=..++|..+.. ..-.+++|-|+-+-|..+.|- +|++ |=+..+. ..++ -.+|-.++..+-..
T Consensus 129 ~aSpEKi~iay~a~~~----~~~~~~ivsDiSSNTVtlaVk---~GKI-VggidaciGAPG~lh-GpLDlE~ir~Id~g- 198 (326)
T TIGR03281 129 IASPEKVSIAYNAYCL----TGFKDFIVSDISSNTVTLLIK---DGKI-IGGFDACVGAPGVLH-GPLDLEAIRNIDAG- 198 (326)
T ss_pred cCCHHHHHHHHHHHHH----cCCCCEEEEecCCCeEEEEEE---CCEE-EccccccccCccccc-CcccHHHHHhcccC-
Confidence 4466667777766543 123689999999888877653 4433 1111110 1112 33555554433210
Q ss_pred HhhhcccccccHHHHHHHHHHHHHHhhhcCCCCceeEEeecccCCcceEEEecHHHHHHHHhh---HHHHHHHHHHHHHH
Q 004296 247 KEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASG---LTEKIAIPCRKALA 323 (763)
Q Consensus 247 ~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~---~~~~i~~~i~~~l~ 323 (763)
+.. +-..||...- ..+-+++.+ ...+++||.+.+.. ....+..++..+..
T Consensus 199 ------~~t---------------an~aFs~aGa--~kIa~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~vam 251 (326)
T TIGR03281 199 ------KKT---------------ANEAFSHAGA--VKIACADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVAM 251 (326)
T ss_pred ------ccc---------------HHHHHhhcCe--eEEeccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 000 1112222111 112222211 25678888776633 33333333333332
Q ss_pred H-cCCCC--CCccEEEEecC--CCChH-HHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCCC
Q 004296 324 D-AGLHV--DKIHSVEIVGS--GSRIP-AITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (763)
Q Consensus 324 ~-~~~~~--~~i~~V~lvGG--~srip-~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~~ 383 (763)
. +.+-. .....|+|.|- ++|.| .+++.|++.|..++. .+.. ++.|.|+|+.|.-+.+.
T Consensus 252 eIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 252 EIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred HHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCC
Confidence 2 12111 13358999987 99999 999999999986553 3344 78899999999877654
No 133
>PLN02920 pantothenate kinase 1
Probab=78.05 E-value=11 Score=40.68 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=35.4
Q ss_pred CCccEEEEecCCCChH-HHHHHHH---hhcC---CCCccCCCchhHHhcchHHhhh
Q 004296 330 DKIHSVEIVGSGSRIP-AITRLLT---SLFG---REPRRSLNASECVARGCALQCA 378 (763)
Q Consensus 330 ~~i~~V~lvGG~srip-~v~~~l~---~~fg---~~~~~~~n~~eava~Gaa~~a~ 378 (763)
..++.|+++|+..|.+ ..++.|. +++. .+....-+.....|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 3688999999999998 6666443 3332 4455666788899999986543
No 134
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=78.00 E-value=13 Score=40.57 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.9
Q ss_pred eEEEEEccccceEEEEEe
Q 004296 2 SVVGFDIGNENCVIATVK 19 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~ 19 (763)
.++.||||.|+.+++.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999864
No 135
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=77.20 E-value=4.9 Score=43.51 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=42.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCC-CC------ccCCCchhHHhcchHHh
Q 004296 304 EELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-EP------RRSLNASECVARGCALQ 376 (763)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~-~~------~~~~n~~eava~Gaa~~ 376 (763)
++++.-+.+-+...|-+.++.... +++.|+++||+++.|.+.+.|++.++. ++ ..+.+.-||++. |++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHH
Confidence 334444444445555555655432 378999999999999999999999963 43 223455566554 555
Q ss_pred hhh
Q 004296 377 CAM 379 (763)
Q Consensus 377 a~~ 379 (763)
|..
T Consensus 335 a~~ 337 (364)
T PF03702_consen 335 AYR 337 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 136
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=76.96 E-value=84 Score=33.59 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=30.9
Q ss_pred ccEEEEecCCCChHHHHHHHHhhc---CCCCccCC---CchhHHhcc
Q 004296 332 IHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARG 372 (763)
Q Consensus 332 i~~V~lvGG~srip~v~~~l~~~f---g~~~~~~~---n~~eava~G 372 (763)
+..|+|.||.+....+.+.|.+.+ |.++..+. -.|.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 667999999999999999999865 43333222 347788887
No 137
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=76.77 E-value=72 Score=34.67 Aligned_cols=82 Identities=17% Similarity=0.066 Sum_probs=57.0
Q ss_pred EEecHHHHHHHHhhHHHHHH-HHHHHHHHHcCCCCCCccE-EEEecCCCChHHHHHHHHhhcC-CCCcc-CCCchhHHhc
Q 004296 296 GFIKREEFEELASGLTEKIA-IPCRKALADAGLHVDKIHS-VEIVGSGSRIPAITRLLTSLFG-REPRR-SLNASECVAR 371 (763)
Q Consensus 296 ~~itr~efe~l~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-V~lvGG~srip~v~~~l~~~fg-~~~~~-~~n~~eava~ 371 (763)
..-.+.++-..++..++++. .+++.++++.+ ++. |.|.||....-..-..|.+..+ .++.. +.-.|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34567788877787777664 56667777776 444 9999999988888888888755 33433 3455889999
Q ss_pred chHHhhhhhCC
Q 004296 372 GCALQCAMLSP 382 (763)
Q Consensus 372 Gaa~~a~~~s~ 382 (763)
|||+++.....
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999985543
No 138
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=76.18 E-value=19 Score=38.16 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=37.9
Q ss_pred ecHHHHHHHHhhH----HHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhc
Q 004296 298 IKREEFEELASGL----TEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF 355 (763)
Q Consensus 298 itr~efe~l~~~~----~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f 355 (763)
+..++.+.+|..+ ++-+.....++|+..+ ++.++++||-+....+|++++++.
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3344555566544 4555555666666655 566999999999999999999877
No 139
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.17 E-value=95 Score=31.62 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred ecCCCCHHHHHHHHHHHHH---cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCeEEE
Q 004296 144 VPSYFTDLQRREYLNAASI---AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKV 220 (763)
Q Consensus 144 VP~~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v 220 (763)
+|.+|+. |+.|+.. ++-. ..+++.-.||+....++- .....||+|+|-|++..+++. .+++.-
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~g 251 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIVG 251 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEEE
Confidence 6777763 3333333 3333 456777777777666543 234899999999999998864 446655
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHH
Q 004296 221 LSHAFDSSLGGRDFDDVLFGYFAAKF 246 (763)
Q Consensus 221 l~~~~~~~lGG~~~D~~l~~~l~~~~ 246 (763)
+.......+.-..|-..|.+++.-++
T Consensus 252 v~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 252 VYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred EeecccccCCHHHHHHHHHHHHhccc
Confidence 55555666777777666666655443
No 140
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=74.17 E-value=1.3e+02 Score=32.36 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhc
Q 004296 312 EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF 355 (763)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f 355 (763)
+-+.+.+.++++.. .++.|+++||-+...++|+.+++.+
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33344444455443 4678999999999999999999987
No 141
>PLN03184 chloroplast Hsp70; Provisional
Probab=74.14 E-value=17 Score=43.14 Aligned_cols=45 Identities=7% Similarity=0.127 Sum_probs=35.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.++++++..+.+.+++++.||+.. | ..+++.+.++|...+.++..
T Consensus 588 ~~~~eer~~l~~~l~~~e~wL~~~-----------d----~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 588 KVPADVKEKVEAKLKELKDAIASG-----------S----TQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999751 2 35777777777777777663
No 142
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=72.97 E-value=3.2 Score=42.40 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.3
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|||++++++++..+
T Consensus 2 ~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS
T ss_pred EEEEEEcccceEEEEEeCCC
Confidence 79999999999999987443
No 143
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=71.63 E-value=20 Score=42.03 Aligned_cols=69 Identities=25% Similarity=0.393 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC----CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHH
Q 004296 676 EARAQATRDLLQCIVEYRTAVGS----LPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLK 751 (763)
Q Consensus 676 ~~rp~a~~~l~~~l~~~~~~~~~----i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~ 751 (763)
..+-++.+.+.+.+...+..++. +++++. .+.+++...||.+....-. ..+++.|+++|++.
T Consensus 527 ~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl~~L~~~ 592 (602)
T PF00012_consen 527 RERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKLEELKKV 592 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHHHHHHHH
Confidence 34444555666666666665544 444444 6889999999999654222 69999999999999
Q ss_pred HHhhhcC
Q 004296 752 CQHLLKG 758 (763)
Q Consensus 752 ~~~l~~~ 758 (763)
++++..+
T Consensus 593 ~~~i~~r 599 (602)
T PF00012_consen 593 IEPIKKR 599 (602)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 144
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=70.74 E-value=4.2 Score=37.55 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.5
Q ss_pred CeEEEEEccccceEEEEEeCC
Q 004296 1 MSVVGFDIGNENCVIATVKHR 21 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~ 21 (763)
|.++|||+|+..+.+|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 679999999999999997654
No 145
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=70.19 E-value=13 Score=28.74 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=27.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcee
Q 004296 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (763)
Q Consensus 139 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~ 168 (763)
...++.|+.++..+|..+.+.|...||..-
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 678999999999999999999999999753
No 146
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.89 E-value=5.5 Score=46.75 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=27.7
Q ss_pred eeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEE
Q 004296 167 PLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 167 ~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (763)
+..+.+=|.|..++....-.. ..+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~---~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL---KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc---ccC-CEEEEEcCCcceeeeeee
Confidence 344666666665554433110 122 699999999999999987
No 147
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=69.38 E-value=29 Score=34.29 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCC--CccCCCchhHHhcchHH
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGRE--PRRSLNASECVARGCAL 375 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~--~~~~~n~~eava~Gaa~ 375 (763)
.+|.-+.+.-++++..++ -+.|++|||-+..-.+|++...+.... ....-|-..|+-.|+-+
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHH
Confidence 345555566666666554 356999999999999999999888321 11223444566666654
No 148
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=69.01 E-value=4.9 Score=37.07 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.0
Q ss_pred CeEEEEEccccceEEEEEeCCc
Q 004296 1 MSVVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~~ 22 (763)
|.++||||||-.+.+|+.+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 7899999999999999976543
No 149
>PRK03011 butyrate kinase; Provisional
Probab=66.94 E-value=16 Score=39.60 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=36.1
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcC----CCCccCCCchhHHhcchHH
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFG----REPRRSLNASECVARGCAL 375 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg----~~~~~~~n~~eava~Gaa~ 375 (763)
+++.|+|.||.+..+.+.+.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 68999999999999999998888774 3344555667899999864
No 150
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=66.91 E-value=81 Score=33.39 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=29.3
Q ss_pred cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
.|++ +.+-|+..|+|++-.+.... .....++++-+|-| .-.+++
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG-IG~giv 149 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG-IGGGII 149 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc-eeEEEE
Confidence 3555 58999999999987765431 23457888888866 334443
No 151
>PLN02362 hexokinase
Probab=65.90 E-value=28 Score=39.58 Aligned_cols=35 Identities=20% Similarity=0.030 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeeecchHHHHHhhhc
Q 004296 149 TDLQRREYLNAASIAGL--RPLRLIHDCTATALGYGI 183 (763)
Q Consensus 149 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~ 183 (763)
...-.+.|.+|...-|+ ++..|+|+.+|..++.+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 34445666666666665 578899999998876543
No 152
>PTZ00288 glucokinase 1; Provisional
Probab=65.69 E-value=35 Score=37.67 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.9
Q ss_pred eEEEEEccccceEEEEEeC
Q 004296 2 SVVGFDIGNENCVIATVKH 20 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~ 20 (763)
.++|+|+|.|++++++++.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFARE 45 (405)
T ss_pred eEEEEEecCCceEEEEEec
Confidence 4899999999999999864
No 153
>PRK00976 hypothetical protein; Provisional
Probab=65.36 E-value=29 Score=36.76 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=38.8
Q ss_pred CccEEEEecCCCChH--HHHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCC
Q 004296 331 KIHSVEIVGSGSRIP--AITRLLTSLFGREPRRSLNASECVARGCALQCAMLSP 382 (763)
Q Consensus 331 ~i~~V~lvGG~srip--~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~ 382 (763)
+++.|+|-||-++.+ .+.+.+++.+...+ ..-...+.++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhC
Confidence 478899999999998 78888888885432 223458999999998876644
No 154
>PLN02405 hexokinase
Probab=64.02 E-value=26 Score=39.73 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHcCCc--eeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEE
Q 004296 149 TDLQRREYLNAASIAGLR--PLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSI 210 (763)
Q Consensus 149 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv 210 (763)
...-.+.|.+|.+.-|++ +..|+|+.++..++.+... +...+-+=+|-||=-+.+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~ 260 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYV 260 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEE
Confidence 444556677777666764 7889999999887665432 223333336766554443
No 155
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=63.82 E-value=1.3e+02 Score=31.89 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhc
Q 004296 314 IAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF 355 (763)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f 355 (763)
+.+.++++++.. .++.|+|.||.+....+++.|.+.+
T Consensus 246 l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 246 LIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 334444555443 4678999999999999999998887
No 156
>PRK13410 molecular chaperone DnaK; Provisional
Probab=63.74 E-value=44 Score=39.65 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=20.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHH
Q 004296 698 SLPPEEQDFIISECYKAEQWLRE 720 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~ 720 (763)
.++++++..+...+++++.||.+
T Consensus 555 ~~~~~~~~~~~~~l~~~~~wL~~ 577 (668)
T PRK13410 555 YFAERQRRAVESAMRDVQDSLEQ 577 (668)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999975
No 157
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.68 E-value=21 Score=27.59 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCcee
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~ 168 (763)
....++.|+.++..+|..+.+.|+..||...
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 4678999999999999999999999999753
No 158
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=63.45 E-value=23 Score=35.10 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=34.0
Q ss_pred CCcceEEEEEeCCceeEEEEEEEeCC-eEEEEEEeCCCC---CchHHHHHHHHHHHHHHHH
Q 004296 191 GGKSYIAFVDIGHSDTQVSIVSFEAG-HMKVLSHAFDSS---LGGRDFDDVLFGYFAAKFK 247 (763)
Q Consensus 191 ~~~~~vlv~D~GggT~dvsv~~~~~~-~~~vl~~~~~~~---lGG~~~D~~l~~~l~~~~~ 247 (763)
.....+|++|+||.++-|+++++.++ .+++....+..+ .-|.. ..|++|+++.+.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i~ 118 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCIA 118 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHHH
T ss_pred CCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHHH
Confidence 34567999999999999999999876 444433332222 11111 556666665443
No 159
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=63.44 E-value=15 Score=43.61 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=37.7
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcC---CCCccC---CCchhHHhcchHHhhh
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFG---REPRRS---LNASECVARGCALQCA 378 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg---~~~~~~---~n~~eava~Gaa~~a~ 378 (763)
.++.|+|+||......+.+.+.+.++ .++..+ .-.|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988773 333322 2458999999988774
No 160
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=62.95 E-value=60 Score=38.23 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=37.5
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.+++++++.+...+++++.||+.. | ..+++.+.++|+..+.+++.
T Consensus 553 ~~~~~~~~~~~~~l~~~~~~l~~~-----------d----~~~~~~~~~~l~~~~~~~~~ 597 (616)
T PRK05183 553 LLSAAERAAIDAAMAALREVAQGD-----------D----ADAIEAAIKALDKATQEFAA 597 (616)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999641 2 27889999999998888874
No 161
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=62.83 E-value=5.9 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=18.4
Q ss_pred Ce-EEEEEccccceEEEEEeCCc
Q 004296 1 MS-VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 1 m~-vvGID~Gtt~s~va~~~~~~ 22 (763)
|. ++|||+|||++++++++..+
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCC
Confidence 44 79999999999999987544
No 162
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=62.77 E-value=53 Score=38.43 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=34.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-e--eHHHHHHHHHH-HHHHHHhhhcC
Q 004296 699 LPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPI-L--WSGDIKRRTED-LKLKCQHLLKG 758 (763)
Q Consensus 699 i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~-~--~~~di~~k~~~-l~~~~~~l~~~ 758 (763)
++.++++.+...+++.+.||+.. ||. + ...+++..++. |++.|++++++
T Consensus 532 l~~~~~~~i~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 584 (595)
T PRK01433 532 LSESEISIINSLLDNIKEAVHAR-----------DIILINNSIKEFKSKIKKSMDTKLNIIIND 584 (595)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 78889999999999999999641 221 1 23455666666 66667777765
No 163
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.91 E-value=2.3e+02 Score=30.36 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=15.9
Q ss_pred CcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHH
Q 004296 648 DETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLL 686 (763)
Q Consensus 648 ~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~ 686 (763)
.++..++..-..+|......|..+..+....-.-+..++
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333333333333333
No 164
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=61.86 E-value=6.3 Score=45.33 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.5
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|||++++++++..+
T Consensus 5 ~lgID~GTts~Ka~l~d~~G 24 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLNG 24 (520)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 89999999999999987543
No 165
>PTZ00107 hexokinase; Provisional
Probab=61.70 E-value=30 Score=38.88 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=27.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCC--ceeeeecchHHHHHhhhcc
Q 004296 145 PSYFTDLQRREYLNAASIAGL--RPLRLIHDCTATALGYGIY 184 (763)
Q Consensus 145 P~~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~ 184 (763)
|.--...-.+.|.+|...-|+ +++.++|+.+|+.++.+..
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~ 230 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQ 230 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhc
Confidence 333445556666677766665 4788999999988776554
No 166
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=61.05 E-value=43 Score=36.04 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=33.3
Q ss_pred CccEEEEecCCCCh-HHHHHHHH---hhcC---CCCccCCCchhHHhcchHHh
Q 004296 331 KIHSVEIVGSGSRI-PAITRLLT---SLFG---REPRRSLNASECVARGCALQ 376 (763)
Q Consensus 331 ~i~~V~lvGG~sri-p~v~~~l~---~~fg---~~~~~~~n~~eava~Gaa~~ 376 (763)
.++.|+++|+.-|. |...+.|. .++. .+.....+...+.|+||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 57889999999875 67788887 5553 34455668889999999864
No 167
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=60.92 E-value=12 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.7
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999988764
No 168
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=60.66 E-value=72 Score=37.42 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.++++++..+...+++++.||.+. | ..+++.+.++|...+.+++.
T Consensus 537 ~~~~~~~~~~~~~l~~~~~~l~~~-----------~----~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 537 LLSEDERAAIDAAMEALQKALQGD-----------D----ADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999751 2 26788888888888877763
No 169
>PRK02224 chromosome segregation protein; Provisional
Probab=60.66 E-value=2e+02 Score=35.46 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 004296 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWL 642 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL 642 (763)
..++.+...+..++..+..-+.......+++..++...-.++..+.+ +...+...++..+...+.+++.=+
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~l~~~~~~l 215 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLDQ-LKAQIEEKEEKDLHERLNGLESEL 215 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888876555555555555555566665555555543 222223333344444444444333
No 170
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=60.63 E-value=7.4 Score=37.08 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.3
Q ss_pred CeEEEEEccccceEEEEEe
Q 004296 1 MSVVGFDIGNENCVIATVK 19 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~ 19 (763)
|-|+|||-|++++..|+..
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 7899999999999999875
No 171
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=59.95 E-value=65 Score=30.26 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=73.4
Q ss_pred eEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhh
Q 004296 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (763)
Q Consensus 195 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 274 (763)
.||-+|.|-.+|-.++++..++.++++.++.-..-.+...- .||....+.+...
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~--------------------------~rl~~I~~~l~~~ 54 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLP--------------------------SRLKTIYDGLNEV 54 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHH--------------------------HHHHHHHHHHHHH
Confidence 37889999999999999988887777765422111111111 1122222222222
Q ss_pred cCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-----CCCccEEEEecCCCChHHHHH
Q 004296 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLH-----VDKIHSVEIVGSGSRIPAITR 349 (763)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~-----~~~i~~V~lvGG~srip~v~~ 349 (763)
+.......+-+|..+=... .+..+ .+..+...+-.++...++. +..+...+.==|.+.=--|+.
T Consensus 55 i~~~~Pd~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~~ 123 (154)
T cd00529 55 IDQFQPDVVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQH 123 (154)
T ss_pred HHHhCCCEEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHHH
Confidence 2221223455554321111 11111 2344566666677676654 445554443224555567889
Q ss_pred HHHhhcCCCCc-cCCCchhHHhcch
Q 004296 350 LLTSLFGREPR-RSLNASECVARGC 373 (763)
Q Consensus 350 ~l~~~fg~~~~-~~~n~~eava~Ga 373 (763)
+++..++.+.. ...|...|.|.+.
T Consensus 124 mv~~~l~~~~~~~~~d~aDAlaiA~ 148 (154)
T cd00529 124 MVKRLLNLSEIPKPDDAADALAVAI 148 (154)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 99999985442 3334444554443
No 172
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.98 E-value=33 Score=36.51 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHH
Q 004296 634 SLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDL 685 (763)
Q Consensus 634 ~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l 685 (763)
.|+++++||-++ +. +++.+.+++.+-++..-||.-++.|+-.-=..|+.+
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~ 58 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEM 58 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 588999999954 34 999999999999999999999988876655555444
No 173
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.79 E-value=2.1e+02 Score=34.31 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=7.3
Q ss_pred EEEEecCCCCH
Q 004296 140 CVIGVPSYFTD 150 (763)
Q Consensus 140 ~VitVP~~~~~ 150 (763)
+|+-+|..|+.
T Consensus 108 ~V~~LP~r~g~ 118 (717)
T PF10168_consen 108 VVLELPRRWGK 118 (717)
T ss_pred EEEEeccccCc
Confidence 56677877653
No 174
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=58.59 E-value=6.8 Score=41.53 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.1
Q ss_pred ceEEEEEeCCceeEEEEEE
Q 004296 194 SYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 194 ~~vlv~D~GggT~dvsv~~ 212 (763)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999975
No 175
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.97 E-value=3.6e+02 Score=31.41 Aligned_cols=164 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh---hhccCCC--HHHHHHHHHHHHHHHHHhhcCCCC
Q 004296 574 KPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFAS--DQEREGISRSLQETEEWLYDDGDD 648 (763)
Q Consensus 574 ~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~~--~~e~~~l~~~l~e~~~WL~~~g~~ 648 (763)
.+++..+.+.+..+...+..-| .+...|......+|..|.. .|..... +...+.+....++..+|.......
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr---~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNR---EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q ss_pred c---CHHHHHHHHHHHHhchhhHHHhhhhhhH-HHHHHHHHHHHHHHHHH---HhcCCC-cchhhHHHHHHHHHHHHHHH
Q 004296 649 E---TANTYASKLEDLKKLVDPIENRYKDGEA-RAQATRDLLQCIVEYRT---AVGSLP-PEEQDFIISECYKAEQWLRE 720 (763)
Q Consensus 649 a---~~~~~~~kl~~L~~~~~pi~~R~~e~~~-rp~a~~~l~~~l~~~~~---~~~~i~-~~e~~~v~~~~~~~~~Wl~~ 720 (763)
. ....+.+.+..|...+..|-.-+.+... .|..++.|+.-...... ....+. +.+++.+.+.+.+...-+..
T Consensus 195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~ 274 (569)
T PRK04778 195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEE 274 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhh
Q 004296 721 IAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHL 755 (763)
Q Consensus 721 ~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 755 (763)
+...++..+.+.+...+..+
T Consensus 275 ---------------l~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 275 ---------------LDLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred ---------------cChHHHHHHHHHHHHHHHHH
No 176
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=57.19 E-value=87 Score=32.13 Aligned_cols=48 Identities=27% Similarity=0.268 Sum_probs=32.5
Q ss_pred ceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCC----CCchHHHHHHHHHHHHH
Q 004296 194 SYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDS----SLGGRDFDDVLFGYFAA 244 (763)
Q Consensus 194 ~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~----~lGG~~~D~~l~~~l~~ 244 (763)
-+++.+.+|-+-|.+..+ .+|++ |=+.+|.. .+||-.+|-.++-.+..
T Consensus 163 ~nfIavE~G~aytaavaV--~nGkI-VDGmgGttgf~gylg~g~MD~ElAYaLa~ 214 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAV--KNGKI-VDGMGGTTGFTGYLGGGAMDGELAYALAN 214 (374)
T ss_pred hhhHHHhhhccceeEEEE--ECCEE-EeccCCccCcccccccccccHHHHHHHHH
Confidence 456788899887765554 35554 44444433 78999999998876654
No 177
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.91 E-value=3.8e+02 Score=31.11 Aligned_cols=18 Identities=22% Similarity=0.075 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 004296 628 REGISRSLQETEEWLYDD 645 (763)
Q Consensus 628 ~~~l~~~l~e~~~WL~~~ 645 (763)
.+++.+.+..+..-|+++
T Consensus 224 ~e~i~~~~~~~~~~L~~~ 241 (563)
T TIGR00634 224 LEKLRELSQNALAALRGD 241 (563)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 345566666666666543
No 178
>PRK15027 xylulokinase; Provisional
Probab=55.86 E-value=8.7 Score=43.76 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=17.2
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|||++++++++..+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQG 21 (484)
T ss_pred EEEEEecccceEEEEEcCCC
Confidence 68999999999999987543
No 179
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=53.83 E-value=1.9e+02 Score=28.28 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHH
Q 004296 625 DQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDL 685 (763)
Q Consensus 625 ~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l 685 (763)
.+-++.|...|+....-+.-+| .+++.++..|..-...-..+..+-..|-.+++..
T Consensus 38 ~eaqeQF~sALe~f~sl~~~~g-----gdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~V 93 (201)
T PF11172_consen 38 QEAQEQFKSALEQFKSLVNFDG-----GDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDV 93 (201)
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666665444 2233344444443333344444444444444443
No 180
>PLN02295 glycerol kinase
Probab=53.71 E-value=10 Score=43.58 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.2
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|||++++++++..+
T Consensus 2 vlgID~GTts~Ka~l~d~~G 21 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDA 21 (512)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999986443
No 181
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=53.40 E-value=1.1e+02 Score=32.13 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=58.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHH-HHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEeCCe
Q 004296 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTAT-ALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGH 217 (763)
Q Consensus 139 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa-al~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~ 217 (763)
...+|-|.--.+.-|.-+.+..-. -++|..|.----|+ ||+..+...... +..-.-+|+|-|-|-|-|-.+. .|
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~v~-er~ltG~VidsGdgvThvipva--Eg- 182 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQVG-ERFLTGIVIDSGDGVTHVIPVA--EG- 182 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhhhh-hheeeeEEEecCCCeeEEEEee--cc-
Confidence 467888887777777776655322 24444443211111 222222322211 2234568999999988776654 33
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHH
Q 004296 218 MKVLSHAFDSSLGGRDFDDVLFGYFA 243 (763)
Q Consensus 218 ~~vl~~~~~~~lGG~~~D~~l~~~l~ 243 (763)
+.+.+.-...++.|++++.-+...+.
T Consensus 183 yVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 183 YVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred eEEeeeeccccccCCchhHHHHHHhh
Confidence 32444455788999999988777664
No 182
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.90 E-value=37 Score=30.48 Aligned_cols=23 Identities=22% Similarity=0.627 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCCcCHHHHHHHHH
Q 004296 637 ETEEWLYDDGDDETANTYASKLE 659 (763)
Q Consensus 637 e~~~WL~~~g~~a~~~~~~~kl~ 659 (763)
..++||++|+...|.+.|+++..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45789999998899999988764
No 183
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=52.57 E-value=13 Score=43.00 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.8
Q ss_pred eEEEEEccccceEEEEEe-CCc
Q 004296 2 SVVGFDIGNENCVIATVK-HRG 22 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~-~~~ 22 (763)
-++|||+|||.+++++++ ..+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G 23 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATG 23 (536)
T ss_pred eEEEEecCCCceEEEEEECCCC
Confidence 379999999999999988 443
No 184
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=52.52 E-value=12 Score=43.23 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=17.2
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|||++++++++..+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTG 21 (541)
T ss_pred EEEEEecCcCEEEEEEcCCC
Confidence 78999999999999986443
No 185
>PRK13318 pantothenate kinase; Reviewed
Probab=52.28 E-value=14 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.4
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
+++||+|+|++++++++++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999988543
No 186
>PLN02914 hexokinase
Probab=51.68 E-value=92 Score=35.28 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEE
Q 004296 149 TDLQRREYLNAASIAGL--RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSF 213 (763)
Q Consensus 149 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 213 (763)
...-.+.|.+|.+.-|+ ++..|+|+.+|..++..... +...+-+=+|-||=-+.+-.+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 44455666667666665 57889999999887665432 123333336777655544433
No 187
>PRK13321 pantothenate kinase; Reviewed
Probab=51.61 E-value=14 Score=37.97 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=17.1
Q ss_pred EEEEEccccceEEEEEeCC
Q 004296 3 VVGFDIGNENCVIATVKHR 21 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~ 21 (763)
+++||+|+|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999855
No 188
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=51.43 E-value=3.1e+02 Score=28.77 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCh-HHHHHHHHhhcCCCCccCCCchhHHhcchHHhhhh
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRI-PAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~sri-p~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
.++++...-|...++.-.+ ......+.+.||.... |.+.....+....+. .--+..||.+.|..
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~ 291 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALG 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHH
Confidence 4556666666666655422 2245679999998877 787777777654322 44567788777753
No 189
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.25 E-value=2.3e+02 Score=29.74 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=29.9
Q ss_pred HcCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
..|++ +.+-|+..|+|++-.+.... ....+++++.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~---~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEF---TQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccc---cCCCcEEEEEecCc-eEEEEE
Confidence 34786 57999999999875443221 23468889899876 444544
No 190
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=50.77 E-value=1.3e+02 Score=35.77 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=35.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhc
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 757 (763)
.++.+++..+.+.+..++.||+. +. . ...+++.+.++|+..+.++..
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~~~~~ 621 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVMECGR 621 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHHHHHH
Confidence 47888888899999999999952 11 1 236888888888888888764
No 191
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=50.15 E-value=12 Score=42.59 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=17.3
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|||++++++++..+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g 22 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDG 22 (493)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 79999999999999987443
No 192
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=49.95 E-value=14 Score=40.10 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=17.8
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++|||+|+|.+++.++++++
T Consensus 4 ~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred EEEEEcCchhEEEEEEcCCC
Confidence 78999999999999988664
No 193
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.53 E-value=5.3e+02 Score=32.18 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=24.2
Q ss_pred CchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 004296 590 QDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSL 635 (763)
Q Consensus 590 ~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l 635 (763)
...-+.+.+++...|+.+|-.+|+.|.. +-.++++.+++-+.+
T Consensus 1459 a~as~~q~~~s~~el~~Li~~v~~Flt~---~~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1459 ANASRSQMEESNRELRNLIQQVRDFLTQ---PDADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHH
Confidence 3333444555566666666677776643 345566665555544
No 194
>PRK00047 glpK glycerol kinase; Provisional
Probab=48.83 E-value=15 Score=42.00 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=16.9
Q ss_pred EEEEEccccceEEEEEeCC
Q 004296 3 VVGFDIGNENCVIATVKHR 21 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~ 21 (763)
++|||+|||++++++++..
T Consensus 7 ~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999998644
No 195
>PLN02377 3-ketoacyl-CoA synthase
Probab=48.59 E-value=34 Score=38.85 Aligned_cols=57 Identities=5% Similarity=0.102 Sum_probs=45.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEE-ecCCCChHHHHHHHHhhcCCC
Q 004296 302 EFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEI-VGSGSRIPAITRLLTSLFGRE 358 (763)
Q Consensus 302 efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~l-vGG~srip~v~~~l~~~fg~~ 358 (763)
.++...++...-+...++++|+++|+++++|+.|++ +.|....|.+-.+|.+.+|.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 345555556666777888999999999999999987 445556899999999999853
No 196
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.51 E-value=42 Score=32.45 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCC-cCHHHHHHHHHHHHhchhhHHH
Q 004296 606 SYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDD-ETANTYASKLEDLKKLVDPIEN 670 (763)
Q Consensus 606 s~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~-a~~~~~~~kl~~L~~~~~pi~~ 670 (763)
.|+-++|..|.+ ++++||+++ ++.++++++|.+++ .+-++..+.|..-+.+.+.+..
T Consensus 5 efL~~L~~~L~~-----lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 5 EFLNELEKYLKK-----LPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHc-----CCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 455566666643 677766655 66677777765433 4556666666555555555553
No 197
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.44 E-value=6.5e+02 Score=31.55 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHh
Q 004296 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKL 615 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 615 (763)
+.+++..+.+.+.+..|... .++..+..+.+|.-+-++|..+
T Consensus 774 ~~s~~~v~~le~~l~~~~~~---~~~~~~~~~~~ee~~~~lr~~~ 815 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDK---ARQHQEQLHELEERVRKLRERI 815 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 57778777777776666433 2333344444444444444444
No 198
>PRK04123 ribulokinase; Provisional
Probab=48.40 E-value=15 Score=42.52 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=16.1
Q ss_pred EEEEEccccceEEEEEe
Q 004296 3 VVGFDIGNENCVIATVK 19 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (763)
++|||+|||++++++++
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999987
No 199
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=48.38 E-value=2.1e+02 Score=33.99 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCceeHHHHHHHH
Q 004296 703 EQDFIISECYKAEQWLREIAQQQDSLP-KNTDPILWSGDIKRRT 745 (763)
Q Consensus 703 e~~~v~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~ 745 (763)
=+..|...+++...++-+..+.--+.| .+.-|.++.+.|-+++
T Consensus 131 vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 131 VLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhc
Confidence 356677777778888777776655566 6667888888877776
No 200
>PLN02902 pantothenate kinase
Probab=48.05 E-value=52 Score=39.49 Aligned_cols=160 Identities=11% Similarity=0.068 Sum_probs=78.7
Q ss_pred cceEEEEEeCCceeEEEEEEEeCC-eEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHH
Q 004296 193 KSYIAFVDIGHSDTQVSIVSFEAG-HMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKL 271 (763)
Q Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~-~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~ 271 (763)
-..+|++.||.|+ |++++... .++-+ ++..+||-.|= -|...|.. . ..+..|++.|.+
T Consensus 213 lyPyLLVNIGSGV---SilkV~~~~~~~RV---gGTsIGGGT~~-GL~~LLtg-------~------~sFdEll~LA~~- 271 (876)
T PLN02902 213 LFPYLLVNIGSGV---SMIKVDGDGKFERV---SGTNVGGGTYW-GLGRLLTK-------C------KSFDELLELSQR- 271 (876)
T ss_pred CCceEEEEcCCce---EEEEEecCCcEEEe---cccccccHhHH-HHHHHHcC-------C------CCHHHHHHHHhc-
Confidence 4568999999995 77777643 33222 34568777763 33333321 0 111222222211
Q ss_pred hhhcCCCCceeEEeecccCCcc-----eEEEecHHH---------------HHHHHhhHHHHHHHHHHHHHHHcCCCCCC
Q 004296 272 KKVLSANAEAPLNIECLMDEKD-----VRGFIKREE---------------FEELASGLTEKIAIPCRKALADAGLHVDK 331 (763)
Q Consensus 272 K~~Ls~~~~~~i~i~~l~~~~d-----~~~~itr~e---------------fe~l~~~~~~~i~~~i~~~l~~~~~~~~~ 331 (763)
..+....+.|..++.+.+ +....+.+- =++++..++.-+..-|-+.--- .-....
T Consensus 272 ----Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L-~A~~~~ 346 (876)
T PLN02902 272 ----GDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYL-NALRFG 346 (876)
T ss_pred ----CCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Confidence 233344556666665321 111111111 2233333443333333221111 011236
Q ss_pred ccEEEEecCCCC-----hHHHHHHHHhhcC---CCCccCCCchhHHhcchHHhhhh
Q 004296 332 IHSVEIVGSGSR-----IPAITRLLTSLFG---REPRRSLNASECVARGCALQCAM 379 (763)
Q Consensus 332 i~~V~lvGG~sr-----ip~v~~~l~~~fg---~~~~~~~n~~eava~Gaa~~a~~ 379 (763)
++.|+++|+.-| |..+..++. ++. .+....-+-...-|+||.+...-
T Consensus 347 ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 347 LKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred CCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 888999999866 344444554 443 33444456667889999876543
No 201
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=47.66 E-value=36 Score=26.37 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=26.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcee
Q 004296 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (763)
Q Consensus 139 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~ 168 (763)
.-.++.|+.+++.+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 567788999999999999999999999754
No 202
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=47.55 E-value=4.5e+02 Score=32.72 Aligned_cols=36 Identities=3% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhh
Q 004296 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLF 616 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~ 616 (763)
++++++|+.+..+ .+++....++.|..+|..+..+.
T Consensus 1507 p~tpeqi~~L~~~----------I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1507 PLTPEQIQQLTGE----------IQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred CCCHHHHHHHHHH----------HHHHHHhcccHHHHHHhhhhhHH
Confidence 5777777776553 44567778888888888777664
No 203
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.47 E-value=7.2e+02 Score=32.71 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHH---HHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 004296 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESY---VYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYD 644 (763)
Q Consensus 572 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~---iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~ 644 (763)
-..++...+.+....+. .++.+++..|+.. +-.+++.+.+ -......|...+.+++.|+..
T Consensus 276 r~~eERR~liEEAag~r------~rk~eA~kkLe~tE~nL~rI~diL~E------Le~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 276 RHANERRVHLEEALELR------RELYTSRRQLAAEQYRLVEMARELAE------LNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred hCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666554443 3333444433332 2223333321 123455666666666666554
No 204
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=46.22 E-value=7.5e+02 Score=32.80 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhcC----------CCC-cCHHHHHHHHHHHHhchhhHHHhhhhhh--------HHHHHHHHHH
Q 004296 626 QEREGISRSLQETEEWLYDD----------GDD-ETANTYASKLEDLKKLVDPIENRYKDGE--------ARAQATRDLL 686 (763)
Q Consensus 626 ~e~~~l~~~l~e~~~WL~~~----------g~~-a~~~~~~~kl~~L~~~~~pi~~R~~e~~--------~rp~a~~~l~ 686 (763)
...+.+.-.|.++..|+.+- |.| +..-.++.+|+-+..-..||..|+...+ ..|+-...++
T Consensus 950 ~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~ 1029 (2473)
T KOG0517|consen 950 LRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAIN 1029 (2473)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 34556667778888887663 111 2233566666666666666666665443 2344334444
Q ss_pred HHHHHHHHHhcC-----------CCc-chhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--ceeHHHHHHHHHHHHHHH
Q 004296 687 QCIVEYRTAVGS-----------LPP-EEQDFIISECYKAEQWLREIAQQQDSLPKNTDP--ILWSGDIKRRTEDLKLKC 752 (763)
Q Consensus 687 ~~l~~~~~~~~~-----------i~~-~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP--~~~~~di~~k~~~l~~~~ 752 (763)
..+......-.. +.+ -.++.+...++.+..|+.....+-.. .+-| +-....+..+...|...+
T Consensus 1030 ~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~s---ee~p~~l~eAe~LL~qH~~l~eEI 1106 (2473)
T KOG0517|consen 1030 ARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQVAS---EEGPVDLAEAEQLLKQHAALREEI 1106 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHHHHHHHH
Confidence 444333221111 222 24677888899999999765443222 2233 223334445555544443
No 205
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=46.18 E-value=54 Score=25.32 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=26.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcee
Q 004296 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (763)
Q Consensus 139 ~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~ 168 (763)
...+..|+.++..||..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367899999999999999999999998753
No 206
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.73 E-value=3.6e+02 Score=28.23 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcC--CCcch
Q 004296 626 QEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGS--LPPEE 703 (763)
Q Consensus 626 ~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~--i~~~e 703 (763)
++|+.+.+.+.++.+= ..++..++++|.+....+..-.+++..-+..+..+...|.....+... +|.++
T Consensus 62 ~~rdeineev~elK~k---------R~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~ 132 (294)
T COG1340 62 EERDEINEEVQELKEK---------RDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEE 132 (294)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHH
Confidence 4555666666555433 334555666655555555554444434444555666666655544333 66555
Q ss_pred hhHHHHHHHHHHHHHHH
Q 004296 704 QDFIISECYKAEQWLRE 720 (763)
Q Consensus 704 ~~~v~~~~~~~~~Wl~~ 720 (763)
=..+...+.+..+-|..
T Consensus 133 E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 133 ERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555554444443
No 207
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=45.53 E-value=38 Score=37.82 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=46.2
Q ss_pred ecCCCCHHHHHHHHHHHHHcCCc---eeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEEe
Q 004296 144 VPSYFTDLQRREYLNAASIAGLR---PLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE 214 (763)
Q Consensus 144 VP~~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~~ 214 (763)
++.-....--+.+.+|.+.-|+. +..++|+.++..++..... +++++-+=+|.||=-+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-------CCcEEEEEECCCccceeeeecc
Confidence 33444455567888888888875 7889999999887665432 4566777789998777776665
No 208
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=44.87 E-value=91 Score=34.50 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=36.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcC
Q 004296 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG 356 (763)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg 356 (763)
++++-+-+++.+..++.+.+.++++++++|..++++|-++-.-.+.-.=-+.++
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~ 108 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLG 108 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhc
Confidence 455666678889999999999999999999999999986555444433333333
No 209
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=44.44 E-value=53 Score=33.80 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCCccEEEEecCCCChHHHHHHHHhhcC--CC--CccCCCchhHHhcchHH
Q 004296 329 VDKIHSVEIVGSGSRIPAITRLLTSLFG--RE--PRRSLNASECVARGCAL 375 (763)
Q Consensus 329 ~~~i~~V~lvGG~srip~v~~~l~~~fg--~~--~~~~~n~~eava~Gaa~ 375 (763)
+..+|.|+|+||.++...+-++|.++.. .+ +.-.-+-.+|-|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4579999999999999999999998874 23 33344667799999853
No 210
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.29 E-value=95 Score=31.78 Aligned_cols=50 Identities=12% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHH-HHHhhcCCC----CcCHHHHHHHHHHHHhchhhHHHhhhhh
Q 004296 626 QEREGISRSLQET-EEWLYDDGD----DETANTYASKLEDLKKLVDPIENRYKDG 675 (763)
Q Consensus 626 ~e~~~l~~~l~e~-~~WL~~~g~----~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 675 (763)
.|.++|+.+|.-+ ++|++++-- .....+-.+.+++|+++++-+...+.+.
T Consensus 89 tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 3444444444433 456665421 1122333444555555555555554444
No 211
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.92 E-value=54 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCce
Q 004296 125 LKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRP 167 (763)
Q Consensus 125 l~~~a~~~~~~~~~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~ 167 (763)
+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 334444444333 45679999 89999999999999999864
No 212
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.75 E-value=7.1e+02 Score=30.55 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=13.3
Q ss_pred CCCCCCceeHHHHHHHHHHHHHHHHhhh
Q 004296 729 PKNTDPILWSGDIKRRTEDLKLKCQHLL 756 (763)
Q Consensus 729 ~~~~dP~~~~~di~~k~~~l~~~~~~l~ 756 (763)
|+|.+-+=+-+....++..|+...+.|+
T Consensus 349 Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 349 PKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444333334455555555555544444
No 213
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=42.28 E-value=20 Score=33.68 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.6
Q ss_pred EEEEEccccceEEEEEe
Q 004296 3 VVGFDIGNENCVIATVK 19 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (763)
|+|||.|++++..|+..
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999875
No 214
>PLN02596 hexokinase-like
Probab=41.36 E-value=1.1e+02 Score=34.54 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEEEE
Q 004296 150 DLQRREYLNAASIAGL--RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSF 213 (763)
Q Consensus 150 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~~~ 213 (763)
..-.+.+.+|...-|+ +++.|+|+.+++.++.+... +...+-+=+|-||=-+.+-++
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-------~~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-------KDTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-------CCeEEEEEEecccceEEEEEc
Confidence 3444556666665565 57889999999887765432 223332336777655444433
No 215
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=40.32 E-value=29 Score=37.64 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.8
Q ss_pred cceEEEEEeCCceeEEEEEE
Q 004296 193 KSYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 193 ~~~vlv~D~GggT~dvsv~~ 212 (763)
...|.++|+|||+|+++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 67899999999999999764
No 216
>PHA02557 22 prohead core protein; Provisional
Probab=40.04 E-value=2e+02 Score=29.34 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHH-HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcC
Q 004296 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESYV-YEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDET 650 (763)
Q Consensus 572 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i-y~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~ 650 (763)
.+.+.....-.-..+++..........+..+.|+.+| |..|+.+-.+-..-+++.+++++...+ +|-..
T Consensus 135 vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~---------Egvef- 204 (271)
T PHA02557 135 VPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLA---------EGLEF- 204 (271)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHH---------hccch-
Q ss_pred HHHHHHHHHHHHhchhh
Q 004296 651 ANTYASKLEDLKKLVDP 667 (763)
Q Consensus 651 ~~~~~~kl~~L~~~~~p 667 (763)
-+.|..||..|.....+
T Consensus 205 ~e~F~~kl~~i~E~v~~ 221 (271)
T PHA02557 205 SETFSKKLTAIVEMVFK 221 (271)
T ss_pred hhHHHHHHHHHHHHHHh
No 217
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=39.50 E-value=5e+02 Score=31.15 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcC-------CC
Q 004296 628 REGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGS-------LP 700 (763)
Q Consensus 628 ~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~-------i~ 700 (763)
.+.....|++++.||. .|...|..++.-+.-|+.+-+-.+--...-..|.+.|+.....+.- +.
T Consensus 39 ld~a~~e~d~le~~l~---------~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~ 109 (701)
T PF09763_consen 39 LDEALAECDELESWLS---------LYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALR 109 (701)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 3566777888888885 4666777777777666665444444444444445555444333211 22
Q ss_pred cchhhHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCce-eHHHHHHHHHHHHHHHHhhhc
Q 004296 701 PEEQDFI--ISECYKAEQWLREIAQQQDSLPKNTDPIL-WSGDIKRRTEDLKLKCQHLLK 757 (763)
Q Consensus 701 ~~e~~~v--~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~-~~~di~~k~~~l~~~~~~l~~ 757 (763)
...+..- ...|.+.-.||...+..-.......+|-+ ....+.++.+.+++......+
T Consensus 110 ~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~ 169 (701)
T PF09763_consen 110 NASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCK 169 (701)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 23345667778777776444333556655 888899999888877665543
No 218
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=39.50 E-value=3e+02 Score=26.19 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred eEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhh
Q 004296 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (763)
Q Consensus 195 ~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~ 274 (763)
.||=+|-|-..|-.++++..++.+.++.++.-..-+...+-.+| ....+.+...
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl--------------------------~~I~~~l~~~ 56 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERL--------------------------KQIYDGLSEL 56 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHH--------------------------HHHHHHHHHH
Confidence 68889999999999999987666666665421111111222222 2222233333
Q ss_pred cCCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-----CCCccEEEEec-CCCChHHHH
Q 004296 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLH-----VDKIHSVEIVG-SGSRIPAIT 348 (763)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~-----~~~i~~V~lvG-G~srip~v~ 348 (763)
+.......+.+|.++-.... ... -.+.+....+..++...++. +..++..+ +| |.+.=--|+
T Consensus 57 i~~~~Pd~vaiE~~f~~~n~---------~sa--~~l~~arGvi~la~~~~~ipv~ey~P~~VKk~v-tG~G~A~K~qV~ 124 (164)
T PRK00039 57 IDEYQPDEVAIEEVFFNKNP---------QSA--LKLGQARGVAILAAAQRGLPVAEYTPLQVKKAV-VGYGRADKEQVQ 124 (164)
T ss_pred HHHhCCCEEEEehhhhccCh---------HHH--HHHHHHHHHHHHHHHHcCCCEEEECHHHhhhhh-cCCCCCCHHHHH
Confidence 32222234445544211111 111 12334555666677776654 33344433 44 445556788
Q ss_pred HHHHhhcCCCCccCCCchhHHhcchHHhhhhhC
Q 004296 349 RLLTSLFGREPRRSLNASECVARGCALQCAMLS 381 (763)
Q Consensus 349 ~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s 381 (763)
.+++..++..- .+.+.|+|=|++.|+..+...
T Consensus 125 ~mv~~~l~l~~-~~~~~D~aDAlAiA~~h~~~~ 156 (164)
T PRK00039 125 HMVKRLLNLPE-IPKPDDAADALAIAICHAHRR 156 (164)
T ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhhc
Confidence 99999998543 223347777777776665543
No 219
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.71 E-value=2.1e+02 Score=27.26 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Q 004296 622 FASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPP 701 (763)
Q Consensus 622 ~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~ 701 (763)
..++++...+...+.++.+=|..- ......+...|..|.+.. +.......-...-.-+..+...|..++.-...+++
T Consensus 68 ~~s~eel~~ld~ei~~L~~el~~l--~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ 144 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELREELAEL--KKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSP 144 (169)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 345666666666666665544431 112223333333333222 11122233333444455555556555553344888
Q ss_pred chhhHHHHHHHHHH
Q 004296 702 EEQDFIISECYKAE 715 (763)
Q Consensus 702 ~e~~~v~~~~~~~~ 715 (763)
+|++.+........
T Consensus 145 ee~~~~~~~~~~~~ 158 (169)
T PF07106_consen 145 EEKEKLEKEYKKWR 158 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887754443
No 220
>PRK12440 acetate kinase; Reviewed
Probab=38.58 E-value=1.4e+02 Score=32.63 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHH-HHHHHHhhcC
Q 004296 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPA-ITRLLTSLFG 356 (763)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~-v~~~l~~~fg 356 (763)
+-++.++.+.|-......+ .+|.|+++||-+.... +++.|.+.++
T Consensus 301 d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 301 EVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3445555555555544433 5999999999888766 9999988774
No 221
>PLN02669 xylulokinase
Probab=38.41 E-value=27 Score=40.45 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHhhhhHHHHHHHHHHhhh
Q 004296 598 KDKKNALESYVYEMRNKLFS 617 (763)
Q Consensus 598 ~~akN~LEs~iy~~r~~l~~ 617 (763)
+.+|.-+|+..|.+|..++.
T Consensus 420 ~~~RAvlEg~a~~~r~~~~~ 439 (556)
T PLN02669 420 SEVRAIIEGQFLSMRAHAER 439 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999864
No 222
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=38.32 E-value=6.3e+02 Score=33.39 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCC-cCHHHHHHHHHHHHhchhhHHHhhhhhhHHHH-----------HHHHHHHHHHH-
Q 004296 627 EREGISRSLQETEEWLYDD--GDD-ETANTYASKLEDLKKLVDPIENRYKDGEARAQ-----------ATRDLLQCIVE- 691 (763)
Q Consensus 627 e~~~l~~~l~e~~~WL~~~--g~~-a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~-----------a~~~l~~~l~~- 691 (763)
|...+..=+.|.+.||.+- +++ .+.+.++.|.+.|..-++....|..+-..... -|..-+..|+.
T Consensus 852 e~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~r 931 (2473)
T KOG0517|consen 852 ECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQR 931 (2473)
T ss_pred hccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4456666777788888752 222 34556666666665544444444433322211 11122222221
Q ss_pred ---HHHHhcC-----CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHh
Q 004296 692 ---YRTAVGS-----LPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQH 754 (763)
Q Consensus 692 ---~~~~~~~-----i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~ 754 (763)
++..+.. -....+..+.-.|.++..|+.++...+..++.-.+-.-.+-++..++..+++-..+
T Consensus 932 W~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~a 1002 (2473)
T KOG0517|consen 932 WQQLRELVDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAA 1002 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHH
Confidence 1111111 11234667778899999999999777776555554444444555444444444333
No 223
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.84 E-value=5.1e+02 Score=30.03 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=7.2
Q ss_pred cccceeEEEecC
Q 004296 394 CNPYSIGISSDE 405 (763)
Q Consensus 394 ~~~~~i~i~~~~ 405 (763)
..+|++++.+.+
T Consensus 52 lslfpl~l~i~g 63 (555)
T TIGR03545 52 TGLFPLQLSIQG 63 (555)
T ss_pred eeecCCeEEEee
Confidence 356667766653
No 224
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.82 E-value=23 Score=32.24 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.4
Q ss_pred EEEEccccceEEEEEeCC
Q 004296 4 VGFDIGNENCVIATVKHR 21 (763)
Q Consensus 4 vGID~Gtt~s~va~~~~~ 21 (763)
+|||+|+..+.+|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999987653
No 225
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.77 E-value=1.1e+03 Score=30.99 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc--CCCcchhh
Q 004296 628 REGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVG--SLPPEEQD 705 (763)
Q Consensus 628 ~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~--~i~~~e~~ 705 (763)
.+.+...+.+..+.+.+- ....+..++.+++|+.-.......+.+.+.+-.........+..++.+.. .++.+++.
T Consensus 364 Lee~eeeLeeleeeleel--eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe 441 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEEN--EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAE 441 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 344444444444444332 22333445555555544444555555555555555666666667777764 48877755
Q ss_pred H----HHHHHHHHHHHHHHHHHH
Q 004296 706 F----IISECYKAEQWLREIAQQ 724 (763)
Q Consensus 706 ~----v~~~~~~~~~Wl~~~~~~ 724 (763)
. +.+.+.+.+.++.+...+
T Consensus 442 ~~LenF~aklee~e~qL~elE~k 464 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQK 464 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444455555565554443
No 226
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=36.63 E-value=44 Score=29.69 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChH--HHHHHHHhhcC
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIP--AITRLLTSLFG 356 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip--~v~~~l~~~fg 356 (763)
|--..+...|+++|+++++++++|+.|...|-++..- .=.+.|.+.|+
T Consensus 22 p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 22 PNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp TTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 3345567789999999999999999999999887753 33446777775
No 227
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.39 E-value=5.5e+02 Score=27.28 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=7.2
Q ss_pred CCcchhhHHHHHHH
Q 004296 699 LPPEEQDFIISECY 712 (763)
Q Consensus 699 i~~~e~~~v~~~~~ 712 (763)
++..|+..+...++
T Consensus 268 ~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 268 FTFKEIEKLKEQLK 281 (312)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 228
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.99 E-value=9.9e+02 Score=30.77 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcC----CCCc-CHHHHHHHHHHHHhchhhHHHhhh
Q 004296 625 DQEREGISRSLQETEEWLYDD----GDDE-TANTYASKLEDLKKLVDPIENRYK 673 (763)
Q Consensus 625 ~~e~~~l~~~l~e~~~WL~~~----g~~a-~~~~~~~kl~~L~~~~~pi~~R~~ 673 (763)
.+.+..+...+.+++.|+..+ |-|. ....|.+++.+|.+...-|..+..
T Consensus 742 ~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 742 AAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445677778888999999873 5554 677888888888887777765433
No 229
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=35.98 E-value=7.5e+02 Score=28.72 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh---hhccCCC--HHHHHHHHHHHHHHHHHhhcCC
Q 004296 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFAS--DQEREGISRSLQETEEWLYDDG 646 (763)
Q Consensus 572 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~~--~~e~~~l~~~l~e~~~WL~~~g 646 (763)
...+++..+...+..+...+..-| .+...|......+|..|.. .|...++ ++..+.+....++..+|.....
T Consensus 112 ~~e~~i~~i~~~l~~L~~~e~~nr---~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD 188 (560)
T PF06160_consen 112 EIEEDIKEILDELDELLESEEKNR---EEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGD 188 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 445667777777777766665554 4455566666777877754 3433333 5567777888888888887532
Q ss_pred CC---cCHHHHHHHHHHHHhchhhHHHhhhh-hhHHHHHHHHHHHHHHHHHH
Q 004296 647 DD---ETANTYASKLEDLKKLVDPIENRYKD-GEARAQATRDLLQCIVEYRT 694 (763)
Q Consensus 647 ~~---a~~~~~~~kl~~L~~~~~pi~~R~~e-~~~rp~a~~~l~~~l~~~~~ 694 (763)
.. -....+.+.+..|...+..|-.-+.+ ....|..++.|+........
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22 13456777888888888888887877 45889999988877665544
No 230
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=35.91 E-value=1.5e+02 Score=28.22 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=51.8
Q ss_pred ecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHH----------------HHHHHHHHHHcCCceeeeecchH
Q 004296 112 FCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQ----------------RREYLNAASIAGLRPLRLIHDCT 175 (763)
Q Consensus 112 ~~~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~ 175 (763)
.++++++..+...+.+.....- .. .+.|++|...+... .+.+.+ ..+++ +.+.|+..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~p-v~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVP-VIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSE-EEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceE-EEEecCCC
Confidence 3456666666666655544432 11 56666665443322 223332 33664 57899999
Q ss_pred HHHHhhhccccCCCCCCcceEEEEEeCCceeEEEEE
Q 004296 176 ATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 176 Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (763)
|+|++....... ....+++++-+|.| .-.+++
T Consensus 103 ~~a~ae~~~~~~---~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 103 AAALAEYWFGAA---KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHHSTT---TTTSSEEEEEESSS-EEEEEE
T ss_pred cceeehhhcCcc---CCcceEEEEEeecC-CCccee
Confidence 999887664321 23467888889876 555554
No 231
>PRK13331 pantothenate kinase; Reviewed
Probab=35.64 E-value=38 Score=34.71 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.0
Q ss_pred CeEEEEEccccceEEEEEeCCc
Q 004296 1 MSVVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~~~ 22 (763)
|-++.||.|+|++++++++++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 4689999999999999998554
No 232
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.46 E-value=7.9e+02 Score=29.14 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHhc-CchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 004296 571 GMTKPELALAQETENLLAQ-QDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWL 642 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~~~-~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL 642 (763)
.++..++..+...+..... ......+..+....+|.-+..+..+|.. ...+++.+.+.+.+++++.=+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~----~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST----IPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHH
Confidence 4566666554444444331 2233344445555666666666666643 233455555555555555444
No 233
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=35.08 E-value=46 Score=30.82 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.9
Q ss_pred CeEEEEEccccceEEEEEeC
Q 004296 1 MSVVGFDIGNENCVIATVKH 20 (763)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~ 20 (763)
|.|++||.|+-|...+++..
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 88999999999999888764
No 234
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=34.94 E-value=2.2e+02 Score=26.56 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=63.0
Q ss_pred EEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhc
Q 004296 196 IAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVL 275 (763)
Q Consensus 196 vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~L 275 (763)
||-+|-|-.+|-.++++..++.++.+.++.-..-....+.++ |..-++.+...+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~~~~~~~~R--------------------------l~~I~~~l~~li 54 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTSSKDSLPER--------------------------LKEIYEELEELI 54 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S--HHHH--------------------------HHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECCCCCCHHHH--------------------------HHHHHHHHHHHH
Confidence 577999999999999999888888877752111112222222 333333333333
Q ss_pred CCCCceeEEeecccCCcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-----CCccEEEEec-CCCChHHHHH
Q 004296 276 SANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHV-----DKIHSVEIVG-SGSRIPAITR 349 (763)
Q Consensus 276 s~~~~~~i~i~~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~-----~~i~~V~lvG-G~srip~v~~ 349 (763)
.......+-+|.++-. + ..... -.+.+....+.-++...+++. ..++.. ++| |.+.=--|+.
T Consensus 55 ~~~~P~~vaiE~~f~~--------~-n~~s~--~~l~~arGvi~l~~~~~~i~v~~y~P~~vKk~-vtG~G~A~KeqV~~ 122 (149)
T PF02075_consen 55 EEYNPDEVAIEEIFFG--------K-NPKSA--LKLGQARGVILLAAAQRGIPVFEYTPSEVKKA-VTGNGRASKEQVAF 122 (149)
T ss_dssp HHH--SEEEEEE-S-------------HHHH--HHHHHHHHHHHHHHHTTT--EEEEEHHHHHHH-HTSSTT--HHHHHH
T ss_pred HhhCCCEEEeehhhhc--------c-CHHHH--HHHHHHHHHHHHHHHHcCCeEEEECHHHHHHH-hhCCCccCHHHHHH
Confidence 3223334555544211 1 11111 123445555555555555432 122222 233 5555678889
Q ss_pred HHHhhcCCC-CccCCCchhHHhc
Q 004296 350 LLTSLFGRE-PRRSLNASECVAR 371 (763)
Q Consensus 350 ~l~~~fg~~-~~~~~n~~eava~ 371 (763)
+++..|+.+ ...+.|...|.|.
T Consensus 123 mv~~ll~l~~~~~~~d~aDAlAi 145 (149)
T PF02075_consen 123 MVRKLLGLDEKPKPDDAADALAI 145 (149)
T ss_dssp HHHHHTT----SS-S-THHHHHH
T ss_pred HHHHHhCCCCCCCccchHhhHhh
Confidence 999999843 3333444444443
No 235
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=34.51 E-value=1.7e+02 Score=32.84 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.9
Q ss_pred CCC-CCcceEEEEEeCCceeEEEEEEEeCCe
Q 004296 188 FAN-GGKSYIAFVDIGHSDTQVSIVSFEAGH 217 (763)
Q Consensus 188 ~~~-~~~~~vlv~D~GggT~dvsv~~~~~~~ 217 (763)
+|. .....++.+|+||..+-|..+.+.++.
T Consensus 79 lP~G~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 79 LPDGTEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CCCCCcCCCEEEEecCCCceEEEEEEecCCc
Confidence 443 456789999999999999999998763
No 236
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=34.45 E-value=2.7e+02 Score=26.17 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 004296 660 DLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPPEEQDFIISE 710 (763)
Q Consensus 660 ~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~~e~~~v~~~ 710 (763)
-|..+..|+..++.+ .++.|++.|+.++.++.+....++.+=+..|.+.
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~~~PGft~d~v~~ll~~ 60 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEKSSPGFTDDFVKGLLER 60 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 477889999999888 6667999999999998886666444444444333
No 237
>PLN02854 3-ketoacyl-CoA synthase
Probab=34.43 E-value=73 Score=36.33 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=41.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEE-ecCCCChHHHHHHHHhhcCCC
Q 004296 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEI-VGSGSRIPAITRLLTSLFGRE 358 (763)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~l-vGG~srip~v~~~l~~~fg~~ 358 (763)
++...++.-.-+...++++|+++|+++++|+.|++ +.|....|.+-.+|.+.+|..
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 33333344444566778899999999999999987 444556899999999999843
No 238
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.31 E-value=3.7e+02 Score=31.29 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhcCchh----HHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcC
Q 004296 575 PELALAQETENLLAQQDIT----MEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDET 650 (763)
Q Consensus 575 ~ei~~~~~~~~~~~~~D~~----~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~ 650 (763)
..+..+...+..+ .|.. .....++...||...+++++.+++ --..|+..+.+.+.+.....-..-.| .+
T Consensus 251 ~~l~~~~~~l~~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~---l~~dp~~L~ele~RL~~l~~LkrKyg--~s 323 (563)
T TIGR00634 251 EGLGEAQLALASV--IDGSLRELAEQVGNALTEVEEATRELQNYLDE---LEFDPERLNEIEERLAQIKRLKRKYG--AS 323 (563)
T ss_pred HHHHHHHHHHHHh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 3455555555554 2322 223334444555555555554442 13567888888888887776554443 34
Q ss_pred HHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcC----CCcchhhHHHHHHHHHHHHHHH
Q 004296 651 ANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGS----LPPEEQDFIISECYKAEQWLRE 720 (763)
Q Consensus 651 ~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~----i~~~e~~~v~~~~~~~~~Wl~~ 720 (763)
.+++.+.+++++.- +...+.....++.+++.+..++..+.. ++...++........+..||..
T Consensus 324 ~e~l~~~~~~l~~e-------L~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 324 VEEVLEYAEKIKEE-------LDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred HHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544444444433 333333344444444444444333222 3333333334444555566644
No 239
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=33.86 E-value=23 Score=33.17 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=14.0
Q ss_pred EEEEEccccceEEEEEeC
Q 004296 3 VVGFDIGNENCVIATVKH 20 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (763)
|+|||-|++++..|++..
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 799999999999998753
No 240
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.67 E-value=8e+02 Score=28.33 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh---------hhc----cCCCHHHHHHHHHHHHH
Q 004296 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---------TYR----SFASDQEREGISRSLQE 637 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---------~~~----~~~~~~e~~~l~~~l~e 637 (763)
+........+.+.-..|.+.++...++.....+.+.-+--++=.+++ ++. ..-.=...++|...+..
T Consensus 150 ~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~ 229 (557)
T COG0497 150 GLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQN 229 (557)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444434456666666666655555555554444443333333322 111 01111224566777777
Q ss_pred HHHHhhcCC
Q 004296 638 TEEWLYDDG 646 (763)
Q Consensus 638 ~~~WL~~~g 646 (763)
+.+-|++++
T Consensus 230 a~~~L~ge~ 238 (557)
T COG0497 230 ALELLSGED 238 (557)
T ss_pred HHHHHhCCC
Confidence 888887544
No 241
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=33.29 E-value=1.3e+02 Score=33.73 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=33.9
Q ss_pred ceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCC-CCchHHHHHHHH
Q 004296 194 SYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDS-SLGGRDFDDVLF 239 (763)
Q Consensus 194 ~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~-~lGG~~~D~~l~ 239 (763)
.+=+-+|+|.+++-+-++.+..+.+.-.+...+. --||+++|.+..
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 4557899999999999999988754333333333 369999988765
No 242
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.29 E-value=5.5e+02 Score=26.37 Aligned_cols=141 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc--CchhHHHHHHHhhhhHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHHh-----hcCC
Q 004296 575 PELALAQETENLLAQ--QDITMEQTKDKKNALESYVYEMRNKLFS-TYRSFASDQEREGISRSLQETEEWL-----YDDG 646 (763)
Q Consensus 575 ~ei~~~~~~~~~~~~--~D~~~~~~~~akN~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l~~~l~e~~~WL-----~~~g 646 (763)
..|..+.++...+.. .+---.....+..+.++++-.||.+ + .-..-.-+.|..+....|+.+..|+ +..+
T Consensus 101 ~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~ 178 (264)
T PF06008_consen 101 DNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENES 178 (264)
T ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHH
Q ss_pred CCcCH----HHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHH
Q 004296 647 DDETA----NTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPPEEQDFIISECYKAEQWLREI 721 (763)
Q Consensus 647 ~~a~~----~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~~e~~~v~~~~~~~~~Wl~~~ 721 (763)
-.... .+|..||.+|+...+-...-..++...-.+....-..+..-...+ .++...+.+.+.+...+|.+.
T Consensus 179 l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l----~~~~~~~~~~L~~a~~~L~~a 253 (264)
T PF06008_consen 179 LAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQEL----SEQQNEVSETLKEAEDLLDQA 253 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
No 243
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.19 E-value=7.5e+02 Score=29.45 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=6.7
Q ss_pred HHHHHhhhhHHH
Q 004296 596 QTKDKKNALESY 607 (763)
Q Consensus 596 ~~~~akN~LEs~ 607 (763)
+++.||.+||..
T Consensus 397 ~rEaar~ElEkq 408 (1118)
T KOG1029|consen 397 RREAAREELEKQ 408 (1118)
T ss_pred HHHHHHHHHHHH
Confidence 345566666653
No 244
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=33.16 E-value=1.2e+02 Score=35.33 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=47.3
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCC-------Cc---CHHHHHHHHHHHHhchh
Q 004296 597 TKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGD-------DE---TANTYASKLEDLKKLVD 666 (763)
Q Consensus 597 ~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~-------~a---~~~~~~~kl~~L~~~~~ 666 (763)
|-.+..+|+..|-..|..+.+ +.++..+.+++.+.|+..... .+ ..++...+.++|.+.+.
T Consensus 650 r~k~~d~~~~~i~~~r~~~~~---------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~ 720 (727)
T KOG0103|consen 650 RPKAFDELGKKIQEIRKAIES---------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCS 720 (727)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccc
Confidence 344555566666665555532 788889999999999987521 12 34888999999999999
Q ss_pred hHHHh
Q 004296 667 PIENR 671 (763)
Q Consensus 667 pi~~R 671 (763)
||..+
T Consensus 721 ~i~~~ 725 (727)
T KOG0103|consen 721 DIISK 725 (727)
T ss_pred ccccc
Confidence 98764
No 245
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.15 E-value=7.1e+02 Score=27.56 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHh
Q 004296 629 EGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENR 671 (763)
Q Consensus 629 ~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R 671 (763)
.+=...|.+...|+|--|.+.+.......-+-+.+....|..+
T Consensus 111 r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~ 153 (420)
T COG4942 111 REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYG 153 (420)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHH
Confidence 4556678888999998777665544333333333333344443
No 246
>PRK00292 glk glucokinase; Provisional
Probab=33.01 E-value=39 Score=35.97 Aligned_cols=49 Identities=29% Similarity=0.251 Sum_probs=30.4
Q ss_pred HcCCceeeeecchHHHHHhhhcccc----CCCC-C--CcceEEEEEeCCceeEEEEE
Q 004296 162 IAGLRPLRLIHDCTATALGYGIYKT----DFAN-G--GKSYIAFVDIGHSDTQVSIV 211 (763)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~----~~~~-~--~~~~vlv~D~GggT~dvsv~ 211 (763)
..|++.+.+.|+..|+|++-..... .+.. . ....++++-+|.| +-.+++
T Consensus 89 ~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 89 ELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 4588768899999999987433100 0000 1 1367888888876 445544
No 247
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.59 E-value=1.2e+02 Score=31.00 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred eEEEEEeCCceeEEEEEEEeCC-eE----------------------EEEEEeCCCCCchHHHHHHHHHHHHHHHHhhhc
Q 004296 195 YIAFVDIGHSDTQVSIVSFEAG-HM----------------------KVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYK 251 (763)
Q Consensus 195 ~vlv~D~GggT~dvsv~~~~~~-~~----------------------~vl~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~ 251 (763)
++|++|+|.||.|+-.+.-... .+ .-+.-. +...||--.+.++..|+.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc------C
Confidence 5799999999999877653210 00 012222 3568999999999988853 3
Q ss_pred ccccccHHHHHHHHHHHHHHhh
Q 004296 252 INVYSNVRACIRLRAACEKLKK 273 (763)
Q Consensus 252 ~~~~~~~~~~~rL~~~ae~~K~ 273 (763)
..+...+++-.-|.+-.|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 3344445555555566666654
No 248
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=3.2e+02 Score=31.93 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcC
Q 004296 698 SLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKG 758 (763)
Q Consensus 698 ~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~ 758 (763)
.++++++.++...+.+.+.||.. . ..+++.+.+.|+...+++...
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~--~--------------~~~~~~~~~~l~~~~~~~~~~ 575 (579)
T COG0443 531 KVSEEEKEKIEEAITDLEEALEG--E--------------KEEIKAKIEELQEVTQKLAEK 575 (579)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc--c--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999976 0 688999999999988887644
No 249
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=31.82 E-value=17 Score=40.17 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=39.9
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcC------CC---------CccCCCchhHHhcchHHhhhhhC
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFG------RE---------PRRSLNASECVARGCALQCAMLS 381 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg------~~---------~~~~~n~~eava~Gaa~~a~~~s 381 (763)
-.+.|.+|||+...|++...|++..- .. ..+..||...+=.|||++|.+-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 35789999999999999999988762 11 12346888888899999987654
No 250
>PRK13326 pantothenate kinase; Reviewed
Probab=31.55 E-value=48 Score=34.28 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.3
Q ss_pred eEEEEEccccceEEEEEeCCc
Q 004296 2 SVVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~ 22 (763)
.++.||.|+|+++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 468999999999999998654
No 251
>PLN03173 chalcone synthase; Provisional
Probab=30.79 E-value=1.3e+02 Score=33.18 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhhcCCCC
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFGREP 359 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~fg~~~ 359 (763)
.-.+-..+.++++|+++|+++++|+.|+++..+. ..|.+--.|.+.+|...
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 3444555678889999999999999998877554 58999999999998543
No 252
>PRK03918 chromosome segregation protein; Provisional
Probab=30.58 E-value=1.1e+03 Score=28.99 Aligned_cols=15 Identities=13% Similarity=-0.099 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 004296 707 IISECYKAEQWLREI 721 (763)
Q Consensus 707 v~~~~~~~~~Wl~~~ 721 (763)
....+.....++.+.
T Consensus 360 ~~~~l~~~~~~~~~l 374 (880)
T PRK03918 360 RHELYEEAKAKKEEL 374 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444445555443
No 253
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=30.28 E-value=25 Score=34.88 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=26.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCc---eeeeecchHHHHHhhh
Q 004296 145 PSYFTDLQRREYLNAASIAGLR---PLRLIHDCTATALGYG 182 (763)
Q Consensus 145 P~~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~ 182 (763)
|..-...-.+.+.+|....|++ ++.++|+.+|+.++.+
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 3333444556777887777775 7789999999887654
No 254
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=29.75 E-value=90 Score=32.87 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=29.3
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcC---------CCCccCCCchhHHhcchHHhh
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFG---------REPRRSLNASECVARGCALQC 377 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg---------~~~~~~~n~~eava~Gaa~~a 377 (763)
+++.|+|-||.+..|.+.+.|++.+. .++....-.+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 46778887776765655555555542 112233355778899999765
No 255
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=29.74 E-value=1.2e+02 Score=32.94 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=33.6
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcC--CCCc--cCCCchhHHhcchH
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFG--REPR--RSLNASECVARGCA 374 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg--~~~~--~~~n~~eava~Gaa 374 (763)
+++.|++.||-+..+.+.+.|.+.+. .++. ...+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57999999999999999999988885 3432 23344678888885
No 256
>PLN03170 chalcone synthase; Provisional
Probab=29.57 E-value=2e+02 Score=31.88 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhhcCCCC
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFGREP 359 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~fg~~~ 359 (763)
...+-.....+++|+++|+++++|+.|+++-.+. .+|.+--.|.+.+|.+.
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 4445556678899999999999999988776544 69999999999998543
No 257
>PF08829 AlphaC_N: Alpha C protein N terminal; InterPro: IPR014933 The alpha C protein (ACP) is found in Streptococcus and acts as an invasin which plays a role in the internalisation and translocation of the organism across human epithelial surfaces. Group B Streptococcus is the leading cause of diseases including bacterial pneumonia, sepsis and meningitis. The N-terminal of ACP is associated with virulence and forms a beta sandwich and a three helix bundle [, , ]. ; PDB: 1YWM_A 2O0I_1.
Probab=29.42 E-value=2.1e+02 Score=27.05 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=27.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 004296 699 LPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKGETPDA 763 (763)
Q Consensus 699 i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~~~~~~ 763 (763)
|++.-+++|...++....=++. .|++ ..||..|+.++..+-+.|+ -+.||+
T Consensus 141 ws~gsrdeVl~gLe~IK~Didn-------nPkt------q~dI~~kI~eVn~leK~Lv-~~~pd~ 191 (194)
T PF08829_consen 141 WSEGSRDEVLEGLEKIKNDIDN-------NPKT------QPDIDNKIIEVNELEKKLV-VPVPDK 191 (194)
T ss_dssp B-HHHHHHHHHHHHHHHHHHHH-------S---------HHHHHHHHHHHHHHHTT---B-----
T ss_pred cCcccHHHHHHHHHHHHHHhhc-------CCCc------ccchHHHHHHhhhhhhccc-ccCCCc
Confidence 6677777777777666655554 3333 3788888888877655444 366664
No 258
>PRK13320 pantothenate kinase; Reviewed
Probab=29.13 E-value=57 Score=33.33 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.2
Q ss_pred eEEEEEccccceEEEEEeCCc
Q 004296 2 SVVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~~~ 22 (763)
.++.||.|+|+++.+++.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 478999999999999988654
No 259
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=28.82 E-value=6.2e+02 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHH-HHHHhcCchhHHHHHHHhhhhHHHHHHHHHHh
Q 004296 571 GMTKPELALAQET-ENLLAQQDITMEQTKDKKNALESYVYEMRNKL 615 (763)
Q Consensus 571 ~ls~~ei~~~~~~-~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 615 (763)
.|+-..++..+.+ -.++..+.+.-.+...-.|+-...+-..-.+|
T Consensus 70 ~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI 115 (254)
T KOG2196|consen 70 SLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKI 115 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHH
Confidence 3555566655544 23555566666666777777666554433333
No 260
>PRK13324 pantothenate kinase; Reviewed
Probab=28.38 E-value=58 Score=33.57 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.4
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++.||.|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999987543
No 261
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=27.92 E-value=64 Score=35.38 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=24.9
Q ss_pred CcceEEEEEeCCceeEEEEEEEe-CCeEEEE
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFE-AGHMKVL 221 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~-~~~~~vl 221 (763)
....+|++|+||..+-+++|.+. +|.+.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 56789999999999999999998 4555443
No 262
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.33 E-value=3.3e+02 Score=22.92 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhc--CchhHHHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcC
Q 004296 575 PELALAQETENLLAQ--QDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDD 645 (763)
Q Consensus 575 ~ei~~~~~~~~~~~~--~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~ 645 (763)
+++..++..+..+.. .|.-.....+++..+++.+-.+|+.+.+ ....-+++.......+++|..++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED-----AADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 345555555555542 3444555666777777777777777655 23334555566666666666554
No 263
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.73 E-value=46 Score=37.00 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH--H---cCCc------eeeeecchHHHHHhhhccccCCCCCCc-ceEEEEEeCCceeEEEEEE
Q 004296 150 DLQRREYLNAAS--I---AGLR------PLRLIHDCTATALGYGIYKTDFANGGK-SYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 150 ~~qr~~l~~Aa~--~---AGl~------~~~li~Ep~Aaal~y~~~~~~~~~~~~-~~vlv~D~GggT~dvsv~~ 212 (763)
...|+++++... + =|++ ...++.-|.|+..+.-+.........+ ..++++|+||-|||+-.+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 356777777641 1 2443 223555666654332211111111122 3499999999999976553
No 264
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=26.62 E-value=72 Score=35.70 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=15.4
Q ss_pred cceEEEEEeCCceeEEEEEE
Q 004296 193 KSYIAFVDIGHSDTQVSIVS 212 (763)
Q Consensus 193 ~~~vlv~D~GggT~dvsv~~ 212 (763)
..++-++||||++++++..-
T Consensus 163 ~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEE
T ss_pred CceEEEEecCCcceeeeecc
Confidence 57899999999999999543
No 265
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.38 E-value=5e+02 Score=31.58 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHH
Q 004296 571 GMTKPELALAQETEN 585 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~ 585 (763)
+++.+-++++++.+.
T Consensus 498 Glp~~ii~~A~~~~~ 512 (782)
T PRK00409 498 GLPENIIEEAKKLIG 512 (782)
T ss_pred CcCHHHHHHHHHHHh
Confidence 688888888777654
No 266
>PRK03918 chromosome segregation protein; Provisional
Probab=26.22 E-value=1.1e+03 Score=28.87 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhh
Q 004296 622 FASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDG 675 (763)
Q Consensus 622 ~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 675 (763)
..++++.+.+...+.+++..+.+- ....+.+..++.++..-...+.......
T Consensus 655 ~~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 655 KYSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777542 2244455555555555444444333333
No 267
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.56 E-value=1e+03 Score=28.26 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCC-----Cc
Q 004296 627 EREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSL-----PP 701 (763)
Q Consensus 627 e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i-----~~ 701 (763)
+.+++...+++++.=|..-......+.+.+++.++++-...+. .+....-..++.+++.+......+..+ ..
T Consensus 399 ~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 399 ELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSE---AEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666666666542222233444444444444333333 333444444444544444444333221 12
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 004296 702 EEQDFIISECYKAEQWLREIAQ 723 (763)
Q Consensus 702 ~e~~~v~~~~~~~~~Wl~~~~~ 723 (763)
.........++.+..+|.+...
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~ 497 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFRE 497 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555666677665433
No 268
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=25.52 E-value=5e+02 Score=32.45 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHH
Q 004296 628 REGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPPEEQDFI 707 (763)
Q Consensus 628 ~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~~e~~~v 707 (763)
...+..+++.+..||.+.+-+ .+......++..+..++.++.....+++..+
T Consensus 381 ~~~~~~kl~qA~~wl~~p~~d----------------------------d~g~g~~AL~~lv~e~~~~A~~~~~~~R~~I 432 (968)
T PF01044_consen 381 AHTVAGKLEQAQRWLANPGVD----------------------------DGGAGRQALRDLVEEARKLADSSDPEEREEI 432 (968)
T ss_dssp HHHHHHHHHHHHHHHCSTSS------------------------------SCHHHHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred ccccccccccccccccccccc----------------------------cHHHHHHHHHHHHHHHHHHHhccccchHHhH
Confidence 457778889999999875411 1122333445555556666656555666666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcee--HHHHHHHHHHHHHHHHh
Q 004296 708 ISECYKAEQWLREIAQQQDSLPKNTDPILW--SGDIKRRTEDLKLKCQH 754 (763)
Q Consensus 708 ~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~--~~di~~k~~~l~~~~~~ 754 (763)
...|+++..-+++ +...........|-.. ...+..++..|.+.++.
T Consensus 433 l~lc~~i~~l~~q-L~dL~~~~~~~spea~~la~~L~~~l~~L~~~l~~ 480 (968)
T PF01044_consen 433 LELCDEIEQLTNQ-LADLEMRGEGDSPEAKALAEQLSQKLDDLRQQLQK 480 (968)
T ss_dssp HHHHHHHHHHHHH-HHHHCHCSCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcch-hhhhhhccCCCcccccccccchhhhHHHHHHHHHH
Confidence 6666666663322 2222333444444322 12445555555554443
No 269
>PLN03172 chalcone synthase family protein; Provisional
Probab=25.48 E-value=1.6e+02 Score=32.53 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhhcCCC
Q 004296 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFGRE 358 (763)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~fg~~ 358 (763)
+...+-..+.++++|+++|+++++|+.|+++..+. .+|.+--.|.+.+|.+
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 34445556678889999999999999998776555 6999999999999854
No 270
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=25.36 E-value=1.5e+02 Score=31.70 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHH
Q 004296 305 ELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAIT 348 (763)
Q Consensus 305 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~ 348 (763)
...+...+.+..+|+++|++++++.+|||.|-.+=|-+.++.+.
T Consensus 45 ~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~ 88 (342)
T COG0533 45 LASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALL 88 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHH
Confidence 44567889999999999999999999999999999988888774
No 271
>PLN03168 chalcone synthase; Provisional
Probab=25.00 E-value=1.5e+02 Score=32.69 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=40.5
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhhcCCC
Q 004296 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGRE 358 (763)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~-srip~v~~~l~~~fg~~ 358 (763)
.+...+-..+..+++|+++|+++++|+.|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 98 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 98 VVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 33445555677889999999999999999876433 35899999999999854
No 272
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=24.97 E-value=1.2e+03 Score=27.49 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=73.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCC--CcCHHHHHHHHHHHHhchhhHHHhhh
Q 004296 596 QTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGD--DETANTYASKLEDLKKLVDPIENRYK 673 (763)
Q Consensus 596 ~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~--~a~~~~~~~kl~~L~~~~~pi~~R~~ 673 (763)
+-......||.|.+.+.+.++. + .+.. +.+ .....+|+.+... .....+..+++ +++..+.+..-+-
T Consensus 330 ~~~~~~k~~~~~~~~~~~~~~~-~----~d~~---~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~k~~~~ 398 (684)
T PHA02566 330 EDQTSIKNLEKFAASVDELLED-Y----KDIV---FEN-SLDALEWINDLNKGRKGMPDEVKAEL--TRSKWKQAKTKFL 398 (684)
T ss_pred cccccHHHHHHHHHHHHHHHHH-h----hhhh---hhh-hhHHHHHHHhhccccccCchHHHHHH--HHHHHHHHHHHHH
Confidence 3345678899999998887753 1 1112 222 5677899987632 22222221111 1122211111000
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHH-----hcCCCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc--eeHHHHHHHH
Q 004296 674 DGEARAQATRDL-LQCIVEYRTA-----VGSLPPEEQDFIISECYKAEQWLREIAQQQDSLPKNTDPI--LWSGDIKRRT 745 (763)
Q Consensus 674 e~~~rp~a~~~l-~~~l~~~~~~-----~~~i~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~--~~~~di~~k~ 745 (763)
+ .++-.+ ......+... ...+|.+|+..|.+=+..--.|.++-+-.. .+|. ..-.++++.+
T Consensus 399 ----~-~~~~~~~~~~~~~~~~~~~~~~~k~LT~~E~~AI~dY~~sgY~~IN~yLrG~------~~s~~~~~~~ei~k~I 467 (684)
T PHA02566 399 ----M-RAIYKFARESASQMYEITGARDPKKLTPAESRAIREYCASGYIDINNFLLGR------YKPEFYMDEEEAEKAI 467 (684)
T ss_pred ----H-HHHHHHHHHHHHHHHHHhhhcCcccCCHHHHHHHHHHHHhhHHHHHHHHhcC------CCcccccChHHHHHHH
Confidence 0 111111 1111111121 122999999999999999989999988422 2333 3335788888
Q ss_pred HHHHHHHHh
Q 004296 746 EDLKLKCQH 754 (763)
Q Consensus 746 ~~l~~~~~~ 754 (763)
+.|++.+..
T Consensus 468 k~IDsAf~k 476 (684)
T PHA02566 468 DNLDSAFKN 476 (684)
T ss_pred HHHHHHHhc
Confidence 888887765
No 273
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.85 E-value=1.4e+02 Score=30.60 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=32.6
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchH
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCA 374 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa 374 (763)
.++.|+| |++-.|++.+.+++.+|.++ .-+||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4677666 99999999999999998654 46799888876553
No 274
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=24.64 E-value=41 Score=38.11 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.7
Q ss_pred EEEEccccceEEEEEeCC
Q 004296 4 VGFDIGNENCVIATVKHR 21 (763)
Q Consensus 4 vGID~Gtt~s~va~~~~~ 21 (763)
||||+||+++++++++..
T Consensus 1 lgIDiGtt~ik~~l~d~~ 18 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ 18 (481)
T ss_pred CceeecCcceEEEEECCC
Confidence 699999999999998643
No 275
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=24.53 E-value=1.9e+02 Score=31.80 Aligned_cols=46 Identities=4% Similarity=-0.010 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhhcC
Q 004296 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFG 356 (763)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~fg 356 (763)
+-++.++.+.|-.....- . ..+|.|+++||-+ ..+.|++.|.+.++
T Consensus 303 d~f~yri~k~Iga~~a~L--~-g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 303 DVFVYRLAKYIGSYAAAL--N-GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHh--c-CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344455555554444332 1 2699999999999 99999999998874
No 276
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=24.04 E-value=64 Score=36.47 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=15.9
Q ss_pred EEEEEccccceEEEEEe
Q 004296 3 VVGFDIGNENCVIATVK 19 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (763)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 68999999999999987
No 277
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.02 E-value=7e+02 Score=27.36 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHhchhhHHHhhhhhhHHH
Q 004296 661 LKKLVDPIENRYKDGEARA 679 (763)
Q Consensus 661 L~~~~~pi~~R~~e~~~rp 679 (763)
-..-..-+..|+..+..||
T Consensus 291 k~~~lkvaqTRL~~R~~RP 309 (384)
T PF03148_consen 291 KEGPLKVAQTRLENRTQRP 309 (384)
T ss_pred HHhhHHHHHHHHhhHhcCC
Confidence 3333444567888888888
No 278
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.69 E-value=3.3e+02 Score=28.69 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=34.7
Q ss_pred CcceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHH
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAA 244 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~l~~ 244 (763)
...+++-+|+|+.++.++++......+..........-....+-+.|.+.+.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~ 56 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAE 56 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHH
Confidence 45789999999999999999887665444444333333334555566555543
No 279
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.65 E-value=68 Score=30.89 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=16.1
Q ss_pred EEEEccccceEEEEEeCC
Q 004296 4 VGFDIGNENCVIATVKHR 21 (763)
Q Consensus 4 vGID~Gtt~s~va~~~~~ 21 (763)
||||.|.|||-+.+++++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999888766
No 280
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=23.49 E-value=2.5e+02 Score=32.34 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=42.9
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHH-cCCceeeeecchHHHHHhhhccccCCCCCCcceEEEEEeCCceeE
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAASI-AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQ 207 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa~~-AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~GggT~d 207 (763)
.+.|+++|...... +.++... .|++.+..-+|..|+.++.+..+.. . ..++++=.|-|.+.
T Consensus 16 v~~vFG~pG~~~~~----l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~t----g-~gv~~~t~GPG~~n 77 (539)
T TIGR03393 16 IDHLFGVPGDYNLQ----FLDHVIDSPDICWVGCANELNAAYAADGYARCK----G-AAALLTTFGVGELS 77 (539)
T ss_pred CCEEEECCCCchHH----HHHHHhhCCCCcEeccCCcccHHHHhhhhhhhc----C-ceEEEEecCccHHH
Confidence 46899999986654 4555533 5899999999999998887766632 2 35666666766544
No 281
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.41 E-value=7.8e+02 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhh
Q 004296 704 QDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLL 756 (763)
Q Consensus 704 ~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 756 (763)
..+....-.++..||.+.+. +|..+...++..+..|.
T Consensus 113 ~dp~e~ek~e~~~wl~~~Id----------------~L~~QiE~~E~E~E~L~ 149 (233)
T PF04065_consen 113 LDPKEKEKEEARDWLKDSID----------------ELNRQIEQLEAEIESLS 149 (233)
T ss_pred cCcchHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 34455566778888887554 45555555555555554
No 282
>PF13941 MutL: MutL protein
Probab=23.39 E-value=1.7e+02 Score=32.79 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=32.5
Q ss_pred EEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCchH-HHHHHHHHHH
Q 004296 196 IAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGR-DFDDVLFGYF 242 (763)
Q Consensus 196 vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG~-~~D~~l~~~l 242 (763)
+|++|||+.+|-++++....+..++++.+....-=.. |+..-+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999976777788877633332222 5555554433
No 283
>PLN02192 3-ketoacyl-CoA synthase
Probab=23.11 E-value=1.8e+02 Score=33.16 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=42.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecC-CCChHHHHHHHHhhcCCC
Q 004296 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGS-GSRIPAITRLLTSLFGRE 358 (763)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG-~srip~v~~~l~~~fg~~ 358 (763)
+++..++...-+...++++|+++|++++||+.|++... ....|.+-.+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 44444555555677888999999999999998876532 235899999999999853
No 284
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.10 E-value=78 Score=34.55 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChH
Q 004296 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIP 345 (763)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip 345 (763)
+.....+...|+++|+++|++.+||+.+++.+++.++-
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH
Confidence 45566777899999999999999999999999998753
No 285
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.01 E-value=6e+02 Score=30.84 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004296 571 GMTKPELALAQETENLL 587 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~ 587 (763)
+++.+-++++++.+...
T Consensus 493 Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGEF 509 (771)
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 68888888877765543
No 286
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=22.97 E-value=41 Score=37.93 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.9
Q ss_pred HHHhhhhHHHHHHHHHHhh
Q 004296 598 KDKKNALESYVYEMRNKLF 616 (763)
Q Consensus 598 ~~akN~LEs~iy~~r~~l~ 616 (763)
+-.|--+|+..|.+|..++
T Consensus 360 ~l~RAv~Egva~~~r~~~e 378 (454)
T TIGR02627 360 ELARCIFDSLALLYRQVLL 378 (454)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578889999999998885
No 287
>PTZ00107 hexokinase; Provisional
Probab=22.95 E-value=3.2e+02 Score=30.87 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred CcceEEEEEeCCceeEEEEEEEeCC
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFEAG 216 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~~ 216 (763)
....+|.+|+||.++-|.+|++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 3566999999999999999999864
No 288
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=22.72 E-value=1.6e+02 Score=32.48 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred cceEEEEEeCCceeEEEEEEEeCCeEEEEEEeCCCCCch-------HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Q 004296 193 KSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG-------RDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLR 265 (763)
Q Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~~~~vl~~~~~~~lGG-------~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~ 265 (763)
+.+++|+-+|+| +|++...+|+. |=.+-|-..+.| -++|-.+.-+++..-+
T Consensus 198 ~~~lIvaHLG~G---~Sv~A~~~Grs-vDtsmG~tpleGl~m~tRsG~ldp~~~~~l~~~~~------------------ 255 (388)
T PF00871_consen 198 DLNLIVAHLGSG---ASVCAIKNGRS-VDTSMGFTPLEGLMMGTRSGDLDPGVLLYLCRSGG------------------ 255 (388)
T ss_dssp G-EEEEEEESSS---EEEEEEETTEE-EEESBTSSTTSSS--SSB--S--THHHHHHHHHCT------------------
T ss_pred ccCEEEEEeCCC---cEEEEEECCEE-EEecCCCCCCCCCCCCCCCCCCChHHHHHHHHhcC------------------
Q ss_pred HHHHHHhhhcCCCCceeEEeecccC-CcceEEEecHH-----HHHHHHhhHHHHHHHHHHHHHHHc-CCCCCCccEEEEe
Q 004296 266 AACEKLKKVLSANAEAPLNIECLMD-EKDVRGFIKRE-----EFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIV 338 (763)
Q Consensus 266 ~~ae~~K~~Ls~~~~~~i~i~~l~~-~~d~~~~itr~-----efe~l~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~lv 338 (763)
...+++...|....- +-++.. ..|++--..+. .-..+++-++.++.+.|-...... | .+|.|+++
T Consensus 256 ~s~~e~~~~l~~~sG----L~g~sG~s~D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~G----~vDaivfT 327 (388)
T PF00871_consen 256 MSADELERLLNKESG----LLGLSGISNDMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLEG----GVDAIVFT 327 (388)
T ss_dssp --HHHHHHHHHHSSH----HHHHHSSSS-HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHTS----S-SEEEEE
T ss_pred CCHHHHHHHHHhccC----cEeccCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCEEEEc
Q ss_pred cCCCCh-HHHHHHHHhhc
Q 004296 339 GSGSRI-PAITRLLTSLF 355 (763)
Q Consensus 339 GG~sri-p~v~~~l~~~f 355 (763)
||.+.. +.+++.+.+.+
T Consensus 328 GGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 328 GGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHTHHHHHHHHCTG
T ss_pred cccccchHHHHHHHHhhc
No 289
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=22.70 E-value=1.9e+02 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=31.2
Q ss_pred EEEEecCCCCh-HHHHHHHHhhc----CCCCccCCCchhHHhcchHHhhhhhCC
Q 004296 334 SVEIVGSGSRI-PAITRLLTSLF----GREPRRSLNASECVARGCALQCAMLSP 382 (763)
Q Consensus 334 ~V~lvGG~sri-p~v~~~l~~~f----g~~~~~~~n~~eava~Gaa~~a~~~s~ 382 (763)
.|+++||.-.. ..+++-....+ +.+-.....|.++-|+|||++||.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 69999996443 33333322222 112234567888999999999997765
No 290
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=22.52 E-value=1.7e+02 Score=30.58 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEE-EEecCCCChHHHHHHHHhhcCC
Q 004296 312 EKIAIPCRKALADAGLHVDKIHSV-EIVGSGSRIPAITRLLTSLFGR 357 (763)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~V-~lvGG~srip~v~~~l~~~fg~ 357 (763)
.-+...++++|+++|+++.+|+.+ +-+..++-.|.+-.+|.+.||.
T Consensus 85 ~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~m 131 (290)
T PF08392_consen 85 MVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGM 131 (290)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCC
Confidence 345677889999999999999965 4456788899999999999983
No 291
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=4.5e+02 Score=26.93 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHhchhhHHH
Q 004296 602 NALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIEN 670 (763)
Q Consensus 602 N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~pi~~ 670 (763)
+.||.++-.+-+.|-.. +.+ -+-+++....+=.||.++++...++ ..++++.-.++...|..
T Consensus 142 g~le~~m~~iMqqllSK--EIL----yeplKEl~~~YPkwLeen~e~l~~E-~~erYqkQ~~~i~~i~~ 203 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSK--EIL----YEPLKELGANYPKWLEENGESLSKE-DKERYQKQFELIKEIES 203 (267)
T ss_pred ccHHHHHHHHHHHHHHH--HHh----hhhHHHHHHHhhHHHHhcccccCHH-HHHHHHHHHHHHHHHHH
Confidence 66777776666655321 111 2357778888999999998776443 35566666666555555
No 292
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.43 E-value=1.2e+02 Score=28.01 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHhhhhhccCCCHHHHHHHH----HHHHHHHHHhhcCC
Q 004296 601 KNALESYVYEMRNKLFSTYRSFASDQEREGIS----RSLQETEEWLYDDG 646 (763)
Q Consensus 601 kN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~----~~l~e~~~WL~~~g 646 (763)
.+.||.+++++.+=-...|..+++++|..++- +.++.+..||...|
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G 75 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHG 75 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 36788888887665545688999999988753 56888999999887
No 293
>PRK00865 glutamate racemase; Provisional
Probab=22.01 E-value=1.8e+02 Score=30.01 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=32.5
Q ss_pred CccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHH
Q 004296 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (763)
Q Consensus 331 ~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~ 375 (763)
.++.|+| |++-+|++.+.+++.++..+ .-+||.+++|.-+.-
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~v-~vIDp~~~~a~~~~~ 218 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVAR 218 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCCC-EEECCHHHHHHHHHH
Confidence 4677766 89999999999999998544 457888887766643
No 294
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=21.94 E-value=6.9e+02 Score=23.71 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhh
Q 004296 714 AEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHL 755 (763)
Q Consensus 714 ~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 755 (763)
...|+.+........+... ...++...+..++.+...+
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~~~~~ 155 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKELEEEL 155 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHHHHHH
Confidence 7889988777655543322 5666666666666555444
No 295
>PRK09604 UGMP family protein; Validated
Probab=21.91 E-value=2.1e+02 Score=30.78 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHH------HhhcCCCCccCCCchhHHhcch
Q 004296 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLL------TSLFGREPRRSLNASECVARGC 373 (763)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l------~~~fg~~~~~~~n~~eava~Ga 373 (763)
....+.+...|+++|+.++++..+|+.|.++.|-...++++--+ ...++.++ ..++-.++-|..|
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl-~~v~h~~~ha~~a 119 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAP 119 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCE-EeecCHHHHHHhh
Confidence 45677888999999999999999999999999988888875543 33445543 4456666666543
No 296
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.83 E-value=1.8e+02 Score=30.84 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCC
Q 004296 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGRE 358 (763)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~ 358 (763)
..+..+...++++|+++|++.++|+.+++..++ +.+.+.+.+.+|.+
T Consensus 222 ~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 222 WAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 345667788999999999999999999999876 44456788888754
No 297
>PRK10869 recombination and repair protein; Provisional
Probab=21.76 E-value=1.3e+03 Score=26.77 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCchhH----HHHHHHhhhhHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCH
Q 004296 576 ELALAQETENLLAQQDITM----EQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDETA 651 (763)
Q Consensus 576 ei~~~~~~~~~~~~~D~~~----~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~g~~a~~ 651 (763)
.+..+...+..+...|... ....++...||...+++++.+++ -...|++.+.+.+.|..+..--.-.| .+.
T Consensus 245 ~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~dp~~l~~ie~Rl~~l~~L~rKyg--~~~ 319 (553)
T PRK10869 245 QLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR---LDLDPNRLAELEQRLSKQISLARKHH--VSP 319 (553)
T ss_pred HHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHhC--CCH
Confidence 4555666666665555332 23344445555555555554442 13567777777777777766655444 344
Q ss_pred HHHHHHHHHHHhchhhHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 004296 652 NTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYR 693 (763)
Q Consensus 652 ~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~ 693 (763)
+++.+.+++++ .++.+.......++.|++.+...+
T Consensus 320 ~~~~~~~~~l~-------~eL~~L~~~e~~l~~Le~e~~~l~ 354 (553)
T PRK10869 320 EELPQHHQQLL-------EEQQQLDDQEDDLETLALAVEKHH 354 (553)
T ss_pred HHHHHHHHHHH-------HHHHHhhCCHHHHHHHHHHHHHHH
Confidence 44444444443 333444444444444544444433
No 298
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=21.48 E-value=78 Score=29.23 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=48.3
Q ss_pred CcceEEEecHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHh
Q 004296 291 EKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVA 370 (763)
Q Consensus 291 ~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava 370 (763)
..++++-|-..+|.+ .+.+++.+-..+.|...|...++++ |+-|=|+--+|+.-+.+.+. -+.|-.||
T Consensus 5 ~~~~ri~IV~s~fn~---~I~~~Ll~ga~~~l~~~gv~~~~i~-v~~VPGa~EiP~a~~~l~~s--------~~~DavIa 72 (141)
T PLN02404 5 GEGLRFGVVVARFNE---IITKNLLEGALETFKRYSVKEENID-VVWVPGSFEIPVVAQRLAKS--------GKYDAILC 72 (141)
T ss_pred CCCCEEEEEEecCcH---HHHHHHHHHHHHHHHHcCCCccceE-EEEcCcHHHHHHHHHHHHhc--------CCCCEEEE
Confidence 334454444445554 4556666666677788888766665 66888999999998777542 23455566
Q ss_pred cchHHhh
Q 004296 371 RGCALQC 377 (763)
Q Consensus 371 ~Gaa~~a 377 (763)
+||.+.+
T Consensus 73 LG~VIrG 79 (141)
T PLN02404 73 IGAVIRG 79 (141)
T ss_pred EEEEEeC
Confidence 6665554
No 299
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=21.39 E-value=1e+03 Score=25.42 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHhhh---hhccCCCHHHHH--HHHHHHHHHHHHhhcC
Q 004296 576 ELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFASDQERE--GISRSLQETEEWLYDD 645 (763)
Q Consensus 576 ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~---~~~~~~~~~e~~--~l~~~l~e~~~WL~~~ 645 (763)
.+.-+..++..+.+-|+..+.. ...+++.|.|++--.|-+ .|.+.+.-+.+. .....+..+.++|..+
T Consensus 43 ~i~wl~~Elr~L~k~eE~V~q~--~~~~~~eF~~elS~lL~El~CPy~eLt~Gdi~~Rf~s~~a~~lLlsyL~SE 115 (465)
T KOG3973|consen 43 QIIWLCAELRELYKIEEYVRQP--NDHNLLEFLYELSTLLLELECPYEELTCGDIRTRFQSSSAKKLLLSYLDSE 115 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHHcCCchHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566665555544433 456789999999998865 455544444443 4445555666676653
No 300
>PRK10869 recombination and repair protein; Provisional
Probab=21.38 E-value=1.3e+03 Score=26.71 Aligned_cols=17 Identities=18% Similarity=0.136 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 004296 628 REGISRSLQETEEWLYD 644 (763)
Q Consensus 628 ~~~l~~~l~e~~~WL~~ 644 (763)
.+++.+.+..+.+-|++
T Consensus 220 ~e~i~~~~~~~~~~L~~ 236 (553)
T PRK10869 220 SGQLLTTSQNALQLLAD 236 (553)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45566667777777765
No 301
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=1.2e+03 Score=26.48 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=17.1
Q ss_pred hcCCCCCCCceeHHHHHHHHHHHHHHHHhhh
Q 004296 726 DSLPKNTDPILWSGDIKRRTEDLKLKCQHLL 756 (763)
Q Consensus 726 ~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 756 (763)
-+.+.|.-|......|.+-+.+|........
T Consensus 699 l~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~ 729 (741)
T KOG4460|consen 699 LPKPTYILSAYQRKCIQSILKELGEHIREMV 729 (741)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666665555555444433
No 302
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=21.19 E-value=88 Score=28.63 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.4
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
+||||+|-.+..+++..+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 68999999999999887665
No 303
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.16 E-value=2.6e+02 Score=23.58 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHH
Q 004296 623 ASDQEREGISRSLQETEEWLYDDGDDETANTYA 655 (763)
Q Consensus 623 ~~~~e~~~l~~~l~e~~~WL~~~g~~a~~~~~~ 655 (763)
+-|+-+..|.+.+.++++||.........+++.
T Consensus 56 mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 56 MIPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 446677888999999999998764455555544
No 304
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=21.04 E-value=87 Score=31.97 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=26.8
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCh
Q 004296 299 KREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRI 344 (763)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~sri 344 (763)
-++.-+.+-..++......|+..+++..-....--.|+++||.++.
T Consensus 174 g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 174 GKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 3455566666666666666666655431111111359999999887
No 305
>PLN02914 hexokinase
Probab=20.93 E-value=2.3e+02 Score=32.23 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred CcceEEEEEeCCceeEEEEEEEeC
Q 004296 192 GKSYIAFVDIGHSDTQVSIVSFEA 215 (763)
Q Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~ 215 (763)
+...+|.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 356799999999999999999976
No 306
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=20.87 E-value=8.2e+02 Score=24.16 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhh
Q 004296 713 KAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLL 756 (763)
Q Consensus 713 ~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 756 (763)
....||..-..-...+ .++-.+..+|..+...|......+.
T Consensus 137 ~Y~~~l~~ekely~~L---~~~d~~~~~l~~ki~~iN~~y~~~~ 177 (204)
T PF10368_consen 137 AYKKALELEKELYEML---KDKDTTQKQLDEKIKAINQSYKEVN 177 (204)
T ss_dssp HHHHHHHHHHHHHHHH---TSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444554433333333 3667788899999988888777665
No 307
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.39 E-value=1.5e+02 Score=30.63 Aligned_cols=71 Identities=21% Similarity=0.139 Sum_probs=44.7
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHhhhccccC-------CCCCCcceEEEEEeCCceeEEE
Q 004296 138 VDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTD-------FANGGKSYIAFVDIGHSDTQVS 209 (763)
Q Consensus 138 ~~~VitVP~~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~-------~~~~~~~~vlv~D~GggT~dvs 209 (763)
.++|+|--.-=-..||..=+.. -..|++.-+++-+||-+|++||+...- +..-+++..|-+=|-+|||.+-
T Consensus 251 ~H~VLswt~~D~N~qk~LNrkl-lk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAw 328 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNRKL-LKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAW 328 (403)
T ss_pred CceEEEeeccChHHHHHHHHHH-HHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchh
Confidence 3567764333234455444444 455799999999999999999987531 1122455566666777777643
No 308
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=20.39 E-value=99 Score=30.57 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.5
Q ss_pred EEEEEccccceEEEEEeCCc
Q 004296 3 VVGFDIGNENCVIATVKHRG 22 (763)
Q Consensus 3 vvGID~Gtt~s~va~~~~~~ 22 (763)
++-||+|+|+++++++.++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999998764
No 309
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.37 E-value=1.5e+02 Score=32.64 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhhcCCCCccCCCchhHHhcchHHhh
Q 004296 312 EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (763)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 377 (763)
..+.+.++++|+.+|++.+++..+.++|.+ +..+...|+.+.. .+--.|.++||.++.
T Consensus 179 ~~a~~~l~~~l~~~Gl~~~di~~i~~TGyG------R~~i~~~~~ad~i--v~EItaha~GA~~L~ 236 (404)
T TIGR03286 179 ESAEEAVERALEEAGVSLEDVEAIGTTGYG------RFTIGEHFGADLI--QEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHHHHHHcCCCccceeEEEeeeec------HHHHhhhcCCCce--EEEEhhHHHHHHHhc
Confidence 356677788899999988899999999988 3445556653322 334467788987653
No 310
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.35 E-value=1.2e+03 Score=29.62 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHhhhhHHHHHHHHHHh
Q 004296 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKL 615 (763)
Q Consensus 571 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 615 (763)
.+++.+...+.+.+......+....+..+....++.-+..+++.+
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666666655444444444443444444444444444444
No 311
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.33 E-value=1.1e+03 Score=25.33 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-hchhh-HHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHH-------H
Q 004296 651 ANTYASKLEDLK-KLVDP-IENRYKDGEARAQATRDLLQCIVEYRTAVGSLPPEEQDFIISECYKAEQWLRE-------I 721 (763)
Q Consensus 651 ~~~~~~kl~~L~-~~~~p-i~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~i~~~e~~~v~~~~~~~~~Wl~~-------~ 721 (763)
.+.+.+++.+|. .+.+| +..-..++...-.....|+...+.++.. +++.+.+...+..|.+ .
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~---------~~~~~~l~~a~~~l~~~~D~em~e 79 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREY---------KKAQEDLEDAKEMLAEEKDPEMRE 79 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhccCCHHHHH
Q ss_pred HHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004296 722 AQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLLKGETPD 762 (763)
Q Consensus 722 ~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~~~~~~ 762 (763)
+.+++- .+++.++..|+...+-++=.+-|+
T Consensus 80 ma~~Ei-----------~~~~~~~~~le~~L~~lLlPkDpn 109 (363)
T COG0216 80 MAEEEI-----------KELEAKIEELEEELKILLLPKDPN 109 (363)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHhcCCCCCC
No 312
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.27 E-value=1e+02 Score=31.23 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCccEEEEecCCCChHH---HHHHHHhhcCCCCccCCCchhHHhcchHHhhhhhCC
Q 004296 329 VDKIHSVEIVGSGSRIPA---ITRLLTSLFGREPRRSLNASECVARGCALQCAMLSP 382 (763)
Q Consensus 329 ~~~i~~V~lvGG~srip~---v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a~~~s~ 382 (763)
....+.|+|.|--+-+.. |+..|....-..+ ..-|-++.++|+|+.|.-.+.
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~ 320 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIAS 320 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHc
Confidence 446788999996666655 6666665553222 123456689999999886554
No 313
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.06 E-value=1.9e+03 Score=28.19 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeHHHHHHHHHHHHHHHHhhh
Q 004296 703 EQDFIISECYKAEQWLREIAQQQDSLPKNTDPILWSGDIKRRTEDLKLKCQHLL 756 (763)
Q Consensus 703 e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 756 (763)
........+.+.++|++..++.+.- ||. ...+++.++..|+..++.+-
T Consensus 744 ~~~~~~~~~~~le~~~~~eL~~~Gv-----D~~-~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 744 AKQEAKEQLKELEQQYNQELAGKGV-----DPE-RIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----CHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888999888875554 542 34677788888887777653
Done!