BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004297
(763 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 117/275 (42%), Gaps = 58/275 (21%)
Query: 37 MQYLY------VRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQ 87
++YLY VR+++A DLP KD G DPYV++ + K T+ K NP +N+
Sbjct: 14 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 88 VFAFS---KDRIQSSVLEVTXXXXXXXXXXXMGRVLFD-LNEIPKRVPPDSPLAPQWYRL 143
F FS + Q + +G+V+ D L E+ ++ PPD PL W +
Sbjct: 74 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 129
Query: 144 EDRKGDKVR-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ +K GEL ++ YL P L
Sbjct: 130 LEGGSEKADLGELNFSL---------------------------------CYL-PTAGLL 155
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ R + + T+NP +NE L+F VA
Sbjct: 156 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 215
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
E E L + V D +EV+G C + + D
Sbjct: 216 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 250
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 117/275 (42%), Gaps = 58/275 (21%)
Query: 37 MQYLY------VRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQ 87
++YLY VR+++A DLP KD G DPYV++ + K T+ K NP +N+
Sbjct: 13 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 88 VFAFS---KDRIQSSVLEVTXXXXXXXXXXXMGRVLFD-LNEIPKRVPPDSPLAPQWYRL 143
F FS + Q + +G+V+ D L E+ ++ PPD PL W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 128
Query: 144 EDRKGDKVR-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ +K GEL ++ YL P L
Sbjct: 129 LEGGSEKADLGELNFSL---------------------------------CYL-PTAGLL 154
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ R + + T+NP +NE L+F VA
Sbjct: 155 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 214
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
E E L + V D +EV+G C + + D
Sbjct: 215 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 249
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK 93
V+ + L V+V+KA DL D +G DP+ +++GN + T K NPEWN+VF F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 94 DRIQSSVLEVT 104
I VLEVT
Sbjct: 69 KDIH-DVLEVT 78
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
+G+L++ +L A L+ D G +D +C+ + G ++T T+ + P+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461
D V+ + VFD GDK +GKV I L ++
Sbjct: 69 KDIHDVLEVTVFD----EDGDKP----PDFLGKVAIPLLSI 101
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 28/144 (19%)
Query: 22 ITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM------------- 67
ITG+ +L YDL L + +++A++L P+D G DP+V+V +
Sbjct: 5 ITGEIQLQINYDLGN----LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 68 -GNYKGTTRHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTX-XXXXXXXXXXMGRVLFD 122
YK T++ +K NPEWNQ + S +++ LEVT +G VL D
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120
Query: 123 LNEIPKRVPPDSPLAPQWYRLEDR 146
L+ D+ P+WY L+++
Sbjct: 121 LSSTSHL---DN--TPRWYPLKEQ 139
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 20/124 (16%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSA---------SRTINPMW 248
L +++++A++L P D + + +VK L G + SA +++NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 249 NEDLMFVA---AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYN 305
N+ +++ + + ++ L +TV D + ++ LG+ +I L LD+ P RWY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST-SHLDNTP---RWYP 135
Query: 306 LEKH 309
L++
Sbjct: 136 LKEQ 139
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 103/283 (36%), Gaps = 49/283 (17%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
KL + D Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 7 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 83 PEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFDLNEIPKRVPPDSPLAPQWYR 142
P +N+ F F ++P L Y
Sbjct: 67 PVFNEQFTF---------------------------------KVPYSELAGKTLVMAVYD 93
Query: 143 LEDRKGDKVRGELMLAVWMGTQADEAFPEAWHS-DAATVTGIEGLANIRSKVYLSPKLWY 201
+ + GE V M T E W +A E L +I + P
Sbjct: 94 FDRFSKHDIIGEF--KVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGK 151
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA----LRTRVSASRTINPMWNEDLMFVAA 257
L V ++EA++L+ D G + YVK L + T+NP +NE F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV- 210
Query: 258 EPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
PFE+ +++TV D K++ +GK + L H
Sbjct: 211 -PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 252
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV-- 77
Query: 259 PFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEG 314
P+ E L++ V D +K +++G+ +P+ VD H V W +L+ E
Sbjct: 78 PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD--FGH--VTEEWRDLQSAEKEEQ 133
Query: 315 EKKKDTKFASR 325
EK D F+ R
Sbjct: 134 EKLGDICFSLR 144
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF----SKDRIQ 97
+ VV A+ L KD TGS DPYV V++G K T+ NP W + F F S DRI+
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIK 80
Query: 98 SSVLE 102
VL+
Sbjct: 81 VRVLD 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF------- 254
+ + V+ AQ LQ DK + YV Q+G RT+ + +NP+W E+ F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIYGNLNPVWEENFHFECHNSSD 77
Query: 255 ---VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIV 311
V ++ + V+ R D+ LG+ +I ++ + +D WYNL+K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD------VWYNLDKRT- 130
Query: 312 VEGEKKKDTKFASRIHMRI 330
K A R+H+ +
Sbjct: 131 ----DKSAVSGAIRLHISV 145
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 357 WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQY 416
W + I + ++ AQGL + KD G++D Y + G+ RT+TI + P W E +
Sbjct: 15 WSAKISIT---VVCAQGL---QAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENF 68
Query: 417 TWEVFDPCTVITIGVFD 433
+E + I + V D
Sbjct: 69 HFECHNSSDRIKVRVLD 85
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V+VIEA +L+ Y + +G+Q+ TR + T+NP WN + F + ++
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTR-TIQDTLNPKWNFNCQFFIKDLYQ 447
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
+ L LT+ DR + D+ LG+ IP+ + + K TR L H V GE
Sbjct: 448 DVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLL--HEVPTGE 499
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWN 86
L V V++A +L G +PY E+ MG+ TTR + NP+WN
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKW 412
A+ S IG L + ++ A L K G ++ YC G + TRTI D+ PKW
Sbjct: 378 ARSQKTSGIGRLMVHVIEATELKACKPN---GKSNPYCEISMGSQSYTTRTIQDTLNPKW 434
Query: 413 NEQYTWEVFDPCT-VITIGVFDNCHLHGGDKAG 444
N + + D V+ + +FD D G
Sbjct: 435 NFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLG 467
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of
Synaptotagmin Vii
Length = 141
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAF 91
Q L V+++KA++LP KD +G+ DP+V++ + +K T+ K NP WN+ F F
Sbjct: 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSA 240
E L I+ V + + L V +++AQ+L D + +VK L L T+V
Sbjct: 10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKV-K 68
Query: 241 SRTINPMWNEDLMFVAAEPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
+ +NP WNE +F P+E+ L L V D ++++ +G+ IPL VD
Sbjct: 69 RKNLNPHWNETFLF-EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 54 DVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXX 110
D+ + DPYVE+ + + + TRHF NP WN+ F F D Q +VLE+T
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 111 XXXXXMGRVLFDLNEI----PKRVP 131
+G F ++ + K VP
Sbjct: 82 VMDETLGTATFTVSSMKVGEKKEVP 106
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 54 DVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXX 110
D+ + DPYVE+ + + + TRHF NP WN+ F F D Q +VLE+T
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 111 XXXXXMGRVLFDLNEI 126
+G F ++ +
Sbjct: 97 VMDETLGTATFTVSSM 112
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 54 DVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXX 110
D+ + DPYVE+ + + + TRHF NP WN+ F F D Q +VLE+T
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 111 XXXXXMGRVLFDLNEI----PKRVP 131
+G F ++ + K VP
Sbjct: 97 VMDETLGTATFTVSSMKVGEKKEVP 121
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 20/130 (15%)
Query: 195 LSPKLWY------LRVNVIEAQDLQPTDKGR----FPEVYVKAQLGNQALRTRVSASRTI 244
LS KLW+ L V ++ A+DL + GR + ++Y ++ R + +T+
Sbjct: 10 LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL 69
Query: 245 NPMWNEDLMF--VAAEPFEEHLI-LTVED--RVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299
P WN+ ++ V F E ++ +T+ D RV + E LG+ +I L+ LD +P
Sbjct: 70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--LLDDEP- 126
Query: 300 NTRWYNLEKH 309
WY L+ H
Sbjct: 127 --HWYKLQTH 134
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTTRHFEKKTNPEWNQVFAFS-- 92
L V ++ AKDLP ++ +PYV++ + K T+ +K P+WNQ F +S
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 93 -KDRIQSSVLEVT---XXXXXXXXXXXMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
+ + +LE+T +G +L +L + D P WY+L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIELETA---LLDDE---PHWYKLQ 132
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF 91
+ L V V AK+L P D G DPYV++K+ K T+ + NPEWN+ F F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF 91
+ L+V V AK+L P D G DPYV++K+ K T+ NP+WN+ F F
Sbjct: 18 EKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 185 GLANIRSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRV 238
G R ++YL ++ L V V +A++L P D + YVK +L N++ +
Sbjct: 1 GHTEKRGRIYLKAEVADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 239 SASRTINPMWNEDLMFVAAEPFEEHLILTVE 269
+ T+NP WNE F +P ++ L+VE
Sbjct: 61 TIRSTLNPQWNESFTF-KLKPSDKDRRLSVE 90
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF 91
+ L+V V AK+L P D G DPYV++K+ K T+ NP+WN+ F F
Sbjct: 16 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 190 RSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRT 243
R ++YL ++ L V V +A++L P D + YVK +L N++ + + T
Sbjct: 4 RGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRST 63
Query: 244 INPMWNEDLMFVAAEPFEEHLILTVE 269
+NP WNE F +P ++ L+VE
Sbjct: 64 LNPQWNESFTF-KLKPSDKDRRLSVE 88
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTW 418
L + + +A+ L+PM D G +D Y K + +T+TI + P+WNE +T+
Sbjct: 18 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Query: 419 EV 420
++
Sbjct: 75 KL 76
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF 91
+ L+V V AK+L P D G DPYV++K+ K T+ NP+WN+ F F
Sbjct: 17 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 190 RSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRT 243
R ++YL ++ L V V +A++L P D + YVK +L N++ + + T
Sbjct: 5 RGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRST 64
Query: 244 INPMWNEDLMFVAAEPFEEHLILTVE 269
+NP WNE F +P ++ L+VE
Sbjct: 65 LNPQWNESFTF-KLKPSDKDRRLSVE 89
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTW 418
L + + +A+ L+PM D G +D Y K + +T+TI + P+WNE +T+
Sbjct: 19 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Query: 419 EV 420
++
Sbjct: 76 KL 77
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL------GNQALRTRVSASRTINPMWNEDLMFV 255
LRV V+ DL D + YVK L AL + +T+NP WNE+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF- 81
Query: 256 AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYV 290
P L+ V D +D+ LG+ +PL ++
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT-------TRHFEKKTNPEWNQV 88
+ + L V+VV DL KD+ G+ DPYV++ + T+ +K NP+WN+
Sbjct: 19 ESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 89 FAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFDLNEIPKRVP 131
F F + +L +G+V L+ +P P
Sbjct: 79 FYFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 377 MKTKDGRGTTDAYC-----VAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDPCTVITI 429
+ KD G +D Y VA ++ V+T+TI + PKWNE++ + V +
Sbjct: 33 LAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLF 92
Query: 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD 464
VFD L RD +G+V + LS L T+
Sbjct: 93 EVFDENRL--------TRDDFLGQVDVPLSHLPTE 119
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF 91
+ L V V AK+L P D G DPYV++K+ K T+ + NPEWN+ F F
Sbjct: 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF 230
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYT 417
VL + + +A+ L+PM D G +D Y K + +T+TI S P+WNE +
Sbjct: 173 VLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFR 229
Query: 418 WEV 420
+++
Sbjct: 230 FQL 232
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 190 RSKVYLSPKL--WYLRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRT 243
R ++Y+ + L V V +A++L P D + YVK +L +++ + + +
Sbjct: 160 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSS 219
Query: 244 INPMWNEDLMFVAAE 258
+NP WNE F E
Sbjct: 220 LNPEWNETFRFQLKE 234
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 20/128 (15%)
Query: 195 LSPKLWY------LRVNVIEAQDLQPTDKGR----FPEVYVKAQLGNQALRTRVSASRTI 244
LS KLW+ L V ++ A+DL + GR + ++Y ++ R + +T+
Sbjct: 7 LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL 66
Query: 245 NPMWNEDLMF--VAAEPFEEHLI-LTVED--RVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299
P WN+ ++ V F E ++ +T+ D RV + E LG+ +I L+ LD +P
Sbjct: 67 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--LLDDEP- 123
Query: 300 NTRWYNLE 307
WY L+
Sbjct: 124 --HWYKLQ 129
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTTRHFEKKTNPEWNQVFAFS-- 92
L V ++ AKDLP ++ +PYV++ + K T+ +K P+WNQ F +S
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 93 -KDRIQSSVLEVT---XXXXXXXXXXXMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
+ + +LE+T +G +L +L + D P WY+L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETA---LLDDE---PHWYKLQ 129
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 204 VNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR----TRVSASRTINPMWNEDLMF-VAAE 258
VN+I+A++L+ D G + YVK L + R V+ R +NP++NE F + E
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 259 PFEE-HLILTVEDRVAPNKDEVLGKCMI 285
E +I+TV D+ ++++V+GK +
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGKIYL 107
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG------TTRHFEKKTNPEWNQVFAF 91
+ V ++KA++L D+ G+ DPYV+V + YK T ++ NP +N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAF 74
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain
Of Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In
The Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In
The Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
KL + D Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 5 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 83 PEWNQVFAF 91
P +N+ F F
Sbjct: 65 PVFNEQFTF 73
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV-- 75
Query: 259 PFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
P+ E L++ V D +K +++G+ +P+ VD H V W +L+
Sbjct: 76 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD--FGH--VTEEWRDLQ 124
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
KL + D Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 83 PEWNQVFAF 91
P +N+ F F
Sbjct: 82 PVFNEQFTF 90
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV-- 92
Query: 259 PFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
P+ E L++ V D +K +++G+ +P+ VD H V W +L+
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD--FGH--VTEEWRDLQ 141
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 183 IEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA----LRTRV 238
+E L +I + P L V ++EA++L+ D G + YVK L +
Sbjct: 8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 67
Query: 239 SASRTINPMWNEDLMFVAAEPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRL 294
T+NP +NE F PFE+ +++TV D K++ +GK + L
Sbjct: 68 IKKNTLNPYYNESFSFEV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL 125
Query: 295 DH 296
H
Sbjct: 126 RH 127
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 18 GGGKITGDKLTSTYDLVEQMQY------LYVRVVKAKDLPPKDVTGSCDPYVEVKM---- 67
GGG G L D+ ++Y L V +++AK+L DV G DPYV++ +
Sbjct: 2 GGG---GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 58
Query: 68 -GNYKGTTRHFEKKTNPEWNQVFAF 91
K T + NP +N+ F+F
Sbjct: 59 KRLKKKKTTIKKNTLNPYYNESFSF 83
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma
Length = 144
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS 92
++V V +A++L P D G DPYV++K+ K TR + NP WN+ F F+
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFN 79
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRTINPMWNEDLMF 254
+ V V EA++L P D + YVK +L N + + T+NP+WNE +F
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
KL + D Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 83 PEWNQVFAF 91
P +N+ F F
Sbjct: 90 PVFNEQFTF 98
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV-- 100
Query: 259 PFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
P+ E L++ V D +K +++G+ +P+ VD
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 137
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
KL + D Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 83 PEWNQVFAF 91
P +N+ F F
Sbjct: 82 PVFNEQFTF 90
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV-- 92
Query: 259 PFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
P+ E L++ V D +K +++G+ +P+ VD H V W +L+
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD--FGH--VTEEWRDLQ 141
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of
Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF 91
L V V+KA+ LP DV+G DPYV+V + Y R +KKT N +N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNL--YHAKKRISKKKTHVKKCTPNAVFNELFVF 88
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA----LRTRVS 239
E L +I + P L V ++EA++L+ D G + YVK L +
Sbjct: 2 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 61
Query: 240 ASRTINPMWNEDLMFVAAEPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD 295
T+NP +NE F PFE+ +++TV D K++ +GK + L
Sbjct: 62 KKNTLNPYYNESFSFEV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 119
Query: 296 H 296
H
Sbjct: 120 H 120
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA----LRTRVS 239
E L +I + P L V ++EA++L+ D G + YVK L +
Sbjct: 1 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 60
Query: 240 ASRTINPMWNEDLMFVAAEPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD 295
T+NP +NE F PFE+ +++TV D K++ +GK + L
Sbjct: 61 KKNTLNPYYNESFSFEV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 118
Query: 296 H 296
H
Sbjct: 119 H 119
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 24/151 (15%)
Query: 355 QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYC-VAKYGQ-----KWVRTRTIIDSP 408
+L V+ + ++ GL KD G +D Y V Y V+T+TI S
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLA---KKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 409 TPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET----- 463
PKWNE+ + V I VFD L RD +G+V + L L T
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDENRL--------TRDDFLGQVDVPLYPLPTENPRM 109
Query: 464 DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494
+R YT + VL+P K + +L ++ T
Sbjct: 110 ERPYT--FKDFVLHPRSHKSRVKGYLRLKMT 138
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG------TTRHFEKKTNPEWNQVFAF 91
V+V+ L KD+ G+ DPYV V + + T+ +K NP+WN+ F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN--QALRTRV---SASRTINPMWNEDLMFVA 256
+RV VI L D + YV+ L + + T V + +++NP WNE+++F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
P ++ V D +D+ LG+ +PL + P R Y + ++
Sbjct: 70 L-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPT---ENPRMERPYTFKDFVLHPRSH 125
Query: 317 KKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351
K K R+ M + G DE+ + +L P
Sbjct: 126 KSRVKGYLRLKMTYLPKNGSE--DENADQAEELEP 158
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG------TTRHFEKKTNPEWNQV 88
E + + VRV+ L KD+ G+ DPYV V + + T+ +K NP+WN+
Sbjct: 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 89 FAF 91
F
Sbjct: 77 ILF 79
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN--QALRTRV---SASRTINPMWNEDLMFVA 256
+RV VI L D + YV+ L + + T V + +++NP WNE+++F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF-R 80
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
P + L+ V D +D+ LG+ +PL
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 377 MKTKDGRGTTDAYC-VAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIG 430
+ KD G +D Y V Y V+T+TI S PKWNE+ + V +
Sbjct: 32 LAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFE 91
Query: 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLYPNGVKKMG 485
VFD L RD +G+V + L L T +R YT + VL+P K
Sbjct: 92 VFDENRL--------TRDDFLGQVDVPLYPLPTENPRLERPYT--FKDFVLHPRSHKSRV 141
Query: 486 EIHLAVRFT 494
+ +L ++ T
Sbjct: 142 KGYLRLKMT 150
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++ A+ L+ D + YV+ Q ++ V+ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYV 290
E L + D+ +D+ +G+ IPL+ V
Sbjct: 72 E-LKAKIFDKDVGTEDDAVGEATIPLEPV 99
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 15/61 (24%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTN--------PEWNQVFAF 91
L V +V AK L D + DPYV++ T R ++K+N PEWN+ F F
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQL-------TCRTQDQKSNVAEGMGTTPEWNETFIF 64
Query: 92 S 92
+
Sbjct: 65 T 65
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF--- 91
L +++AK L P D G DPYV++ + + K T+ NP WN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 92 SKDRIQSSVLEVT 104
+++ +Q L ++
Sbjct: 91 TEEDMQRKTLRIS 103
Score = 35.8 bits (81), Expect = 0.093, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINPMWNEDLMF 254
L+ +I A+ L+P D + YVK L + LRT+ + T NP+WNE L +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTK-TLRNTRNPVWNETLQY 87
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 341 ESTHYSSDLRPTAKQL-----WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCV---- 391
E+ Y SD T L + L+ I+ A+GL PM D G D Y
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLL 59
Query: 392 --AKYGQKWVRTRTIIDSPTPKWNE 414
A K +RT+T+ ++ P WNE
Sbjct: 60 PGASKSNK-LRTKTLRNTRNPVWNE 83
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAF--- 91
L +++AK L P D G DPYV++ + + K T+ NP WN+ +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 92 SKDRIQSSVLEVT 104
+++ +Q L ++
Sbjct: 89 TEEDMQRKTLRIS 101
Score = 35.8 bits (81), Expect = 0.097, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINPMWNEDLMF 254
L+ +I A+ L+P D + YVK L + LRT+ + T NP+WNE L +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTK-TLRNTRNPVWNETLQY 85
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 341 ESTHYSSDLRPTAKQL-----WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCV---- 391
E+ Y SD T L + L+ I+ A+GL PM D G D Y
Sbjct: 1 EANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLL 57
Query: 392 --AKYGQKWVRTRTIIDSPTPKWNE 414
A K +RT+T+ ++ P WNE
Sbjct: 58 PGASKSNK-LRTKTLRNTRNPVWNE 81
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 220 FPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKD 277
F ++++K +G +A +T+NP +NE+ + ++ ++ L ++V D +
Sbjct: 61 FVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSN 120
Query: 278 EVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYH 337
+ +G C + + +RL H WY E K KD K +H
Sbjct: 121 DYIGGCQLGISAKGERLKH------WY--------ECLKNKDKKIER-----------WH 155
Query: 338 VLDESTHYSSD 348
L H SSD
Sbjct: 156 QLQNENHVSSD 166
>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489
GVF +C HGG AGG ++ G ++ S ++T V H+ P + ++MG L
Sbjct: 158 GVFFSCFDHGG--AGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGIGEL 215
Query: 490 AVRFTCSSLLNMM-HMYSQPLLPKMHYL 516
+ + L +++ + + P + +Y
Sbjct: 216 NNAYEDAQLADVIWSIGNNPYESQTNYF 243
>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 825
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489
GVF +C HGG AGG ++ G ++ S ++T V H+ P + ++MG L
Sbjct: 158 GVFFSCFDHGG--AGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGIGEL 215
Query: 490 AVRFTCSSLLNMM-HMYSQPLLPKMHYL 516
+ + L +++ + + P + +Y
Sbjct: 216 NNAYEDAQLADVIWSIGNNPYESQTNYF 243
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 27/131 (20%)
Query: 220 FPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKD 277
F ++++K G +A +T+NP +NE+ + ++ ++ L ++V D +
Sbjct: 61 FVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSN 120
Query: 278 EVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYH 337
+ +G C + + +RL H WY E K KD K +H
Sbjct: 121 DYIGGCQLGISAKGERLKH------WY--------ECLKNKDKKIER-----------WH 155
Query: 338 VLDESTHYSSD 348
L H SSD
Sbjct: 156 QLQNENHVSSD 166
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRF----PEVYVKAQ-LGNQ--ALRTRVSASRTINPMWNEDLMF 254
LRV +I Q L +K + P+V V+ +G + +T V + NP W+ + F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 255 VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIP 286
P + VED + +K++ +G+ IP
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 590
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRF----PEVYVKAQLGNQALRTRVSA---SRTINPMWNEDLMF 254
LRV +I Q L +K + P+V V+ + +R +A + NP W+ + F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 255 VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIP 286
P + VED + +K++ +G+ IP
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 588
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 220 FPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKD 277
F ++++K +G +A +T+NP +NE+ + ++ ++ L ++V D +
Sbjct: 39 FVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSN 98
Query: 278 EVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309
+ +G C + + +RL H WY K+
Sbjct: 99 DYIGGCQLGISAKGERLKH------WYECLKN 124
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 188 NIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPM 247
N + + +W R + I+A + Q G F EVY K + N++ + S +
Sbjct: 577 NAKGQQVFLKDIWPTR-DEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLF-F 634
Query: 248 WNEDLMFVAAEPFEEHLILTVE 269
WN ++ + PF E+L L ++
Sbjct: 635 WNSKSTYIKSPPFFENLTLDLQ 656
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPE 84
Q + L + +++ K L K G+CDPYV++ + RH + +T P+
Sbjct: 25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,073,257
Number of Sequences: 62578
Number of extensions: 961787
Number of successful extensions: 2143
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2027
Number of HSP's gapped (non-prelim): 100
length of query: 763
length of database: 14,973,337
effective HSP length: 106
effective length of query: 657
effective length of database: 8,340,069
effective search space: 5479425333
effective search space used: 5479425333
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)