Query 004297
Match_columns 763
No_of_seqs 468 out of 3226
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:00:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 6E-45 1.3E-49 329.5 14.9 156 608-763 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 1.3E-26 2.8E-31 261.1 34.5 399 33-496 431-842 (1227)
3 KOG1028 Ca2+-dependent phospho 100.0 1.9E-27 4.1E-32 257.5 24.6 224 26-289 155-393 (421)
4 KOG1028 Ca2+-dependent phospho 99.9 2.3E-25 5E-30 241.3 26.3 216 198-460 165-393 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 4.3E-24 9.3E-29 241.0 32.2 411 37-493 578-1160(1227)
6 KOG1326 Membrane-associated pr 99.9 1.2E-25 2.5E-30 248.5 11.0 287 197-493 610-1021(1105)
7 KOG2059 Ras GTPase-activating 99.9 2.4E-22 5.3E-27 215.2 19.9 248 201-496 6-278 (800)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 3.3E-22 7.2E-27 179.7 14.6 125 363-489 1-125 (126)
9 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.4E-21 3E-26 182.4 16.5 149 202-351 2-150 (150)
10 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-21 2.6E-26 174.9 15.2 118 362-493 2-121 (121)
11 KOG2059 Ras GTPase-activating 99.9 2.4E-21 5.3E-26 207.6 16.9 250 38-333 5-276 (800)
12 cd08682 C2_Rab11-FIP_classI C2 99.8 1E-20 2.2E-25 172.7 13.4 117 364-491 1-125 (126)
13 cd04016 C2_Tollip C2 domain pr 99.8 2.5E-20 5.3E-25 166.5 15.6 117 38-161 2-121 (121)
14 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.8E-20 3.9E-25 168.9 14.5 121 39-163 1-121 (121)
15 PF04842 DUF639: Plant protein 99.8 1.2E-20 2.7E-25 204.9 14.7 164 558-741 486-653 (683)
16 KOG1030 Predicted Ca2+-depende 99.8 7.3E-21 1.6E-25 172.2 10.7 118 360-492 4-121 (168)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 8.2E-20 1.8E-24 165.5 15.1 120 363-495 1-121 (121)
18 cd04015 C2_plant_PLD C2 domain 99.8 2.1E-19 4.5E-24 169.6 15.3 123 362-493 7-157 (158)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.8E-19 6.1E-24 161.2 15.0 119 364-493 2-121 (121)
20 cd08682 C2_Rab11-FIP_classI C2 99.8 2.8E-19 6E-24 163.2 14.3 117 40-159 1-125 (126)
21 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.5E-19 5.3E-24 167.3 14.1 122 363-495 1-133 (150)
22 cd08375 C2_Intersectin C2 doma 99.8 8.2E-19 1.8E-23 161.3 15.1 119 358-493 11-135 (136)
23 cd08681 C2_fungal_Inn1p-like C 99.8 5.2E-19 1.1E-23 159.6 12.7 116 362-493 1-118 (118)
24 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.7E-18 3.7E-23 157.5 15.4 119 362-495 4-124 (126)
25 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.6E-18 3.4E-23 156.0 14.5 113 363-493 1-114 (116)
26 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.2E-18 4.7E-23 156.1 15.4 118 39-162 1-120 (121)
27 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.5E-18 3.3E-23 156.0 14.0 112 40-157 2-125 (126)
28 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.8E-18 4E-23 158.0 14.9 120 39-162 1-126 (127)
29 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.2E-18 4.7E-23 155.9 15.1 118 362-493 1-118 (119)
30 KOG1030 Predicted Ca2+-depende 99.8 6.2E-19 1.3E-23 159.8 10.9 95 34-129 2-97 (168)
31 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.8E-18 4E-23 158.0 14.2 121 363-494 1-126 (127)
32 cd08375 C2_Intersectin C2 doma 99.8 3E-18 6.4E-23 157.6 15.4 124 34-161 11-135 (136)
33 cd08678 C2_C21orf25-like C2 do 99.8 2.6E-18 5.6E-23 156.7 14.9 120 364-496 1-122 (126)
34 cd08681 C2_fungal_Inn1p-like C 99.8 2.3E-18 5E-23 155.4 13.5 117 38-161 1-118 (118)
35 cd04024 C2A_Synaptotagmin-like 99.8 2.9E-18 6.3E-23 157.3 14.1 123 362-493 1-128 (128)
36 cd08381 C2B_PI3K_class_II C2 d 99.8 2.6E-18 5.5E-23 155.2 13.3 100 362-473 13-121 (122)
37 cd04028 C2B_RIM1alpha C2 domai 99.8 5.1E-18 1.1E-22 156.2 15.0 104 362-475 29-138 (146)
38 cd08381 C2B_PI3K_class_II C2 d 99.8 3.1E-18 6.7E-23 154.6 12.9 109 25-143 4-121 (122)
39 cd04029 C2A_SLP-4_5 C2 domain 99.8 4.6E-18 1E-22 154.2 14.0 105 360-474 13-125 (125)
40 cd08677 C2A_Synaptotagmin-13 C 99.8 4.5E-18 9.7E-23 149.1 13.2 101 359-473 11-118 (118)
41 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.2E-18 6.9E-23 155.5 12.7 103 361-474 14-125 (125)
42 cd08677 C2A_Synaptotagmin-13 C 99.8 3.1E-18 6.8E-23 150.1 11.9 110 26-143 2-118 (118)
43 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 4.8E-18 1E-22 154.4 13.6 118 363-491 1-122 (123)
44 cd08391 C2A_C2C_Synaptotagmin_ 99.8 5.2E-18 1.1E-22 153.9 13.4 117 362-493 1-121 (121)
45 cd08394 C2A_Munc13 C2 domain f 99.8 6E-18 1.3E-22 149.6 13.2 102 37-146 1-102 (127)
46 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 8.9E-18 1.9E-22 151.8 14.3 117 364-492 2-120 (121)
47 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 7.5E-18 1.6E-22 155.5 14.1 119 363-493 1-132 (133)
48 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.5E-17 3.3E-22 149.5 15.1 113 39-161 1-114 (116)
49 cd04046 C2_Calpain C2 domain p 99.8 2.4E-17 5.3E-22 150.1 16.0 120 361-494 2-122 (126)
50 cd04024 C2A_Synaptotagmin-like 99.8 1.5E-17 3.4E-22 152.4 14.8 121 38-160 1-127 (128)
51 cd04036 C2_cPLA2 C2 domain pre 99.8 1.2E-17 2.7E-22 150.7 13.5 112 364-493 2-117 (119)
52 cd08378 C2B_MCTP_PRT_plant C2 99.7 9.7E-18 2.1E-22 151.2 12.4 113 363-493 1-119 (121)
53 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.5E-17 3.3E-22 151.4 13.8 116 323-474 2-123 (124)
54 cd04028 C2B_RIM1alpha C2 domai 99.7 2.4E-17 5.2E-22 151.7 15.0 115 23-147 18-140 (146)
55 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.7E-17 3.6E-22 150.8 12.9 116 25-144 4-128 (128)
56 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.5E-17 3.2E-22 151.1 12.4 113 25-144 4-125 (125)
57 cd08377 C2C_MCTP_PRT C2 domain 99.7 5.6E-17 1.2E-21 146.6 15.8 116 38-161 1-118 (119)
58 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 4.9E-17 1.1E-21 150.1 15.2 122 39-161 1-132 (133)
59 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.6E-17 1.2E-21 147.4 15.1 116 39-159 1-122 (123)
60 cd08392 C2A_SLP-3 C2 domain fi 99.7 3.4E-17 7.4E-22 148.7 13.6 102 361-473 14-127 (128)
61 cd04050 C2B_Synaptotagmin-like 99.7 2.1E-17 4.5E-22 145.5 11.9 103 39-146 1-103 (105)
62 cd08400 C2_Ras_p21A1 C2 domain 99.7 8.4E-17 1.8E-21 146.4 16.2 119 36-163 2-124 (126)
63 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.2E-17 6.9E-22 148.7 13.4 112 26-144 5-125 (125)
64 cd04027 C2B_Munc13 C2 domain s 99.7 5.1E-17 1.1E-21 148.2 14.6 123 363-491 2-127 (127)
65 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 6.7E-17 1.5E-21 145.7 15.1 115 40-160 2-120 (121)
66 cd08391 C2A_C2C_Synaptotagmin_ 99.7 5.8E-17 1.3E-21 147.0 14.4 114 38-160 1-120 (121)
67 cd08395 C2C_Munc13 C2 domain t 99.7 3.5E-17 7.6E-22 145.8 12.6 103 39-147 1-114 (120)
68 cd08394 C2A_Munc13 C2 domain f 99.7 3.2E-17 6.9E-22 145.0 12.2 98 362-475 2-101 (127)
69 cd04017 C2D_Ferlin C2 domain f 99.7 9.7E-17 2.1E-21 148.1 16.0 122 38-163 1-133 (135)
70 cd04015 C2_plant_PLD C2 domain 99.7 9.3E-17 2E-21 151.6 16.2 119 37-161 6-157 (158)
71 cd08395 C2C_Munc13 C2 domain t 99.7 3.6E-17 7.9E-22 145.7 12.5 101 363-475 1-112 (120)
72 cd04044 C2A_Tricalbin-like C2 99.7 4.3E-17 9.4E-22 148.6 13.3 120 361-494 1-123 (124)
73 cd04036 C2_cPLA2 C2 domain pre 99.7 5.8E-17 1.3E-21 146.3 14.0 113 40-161 2-117 (119)
74 cd08387 C2A_Synaptotagmin-8 C2 99.7 5.2E-17 1.1E-21 147.8 13.8 114 26-144 4-123 (124)
75 cd04011 C2B_Ferlin C2 domain s 99.7 4.9E-17 1.1E-21 144.8 12.8 106 35-146 1-111 (111)
76 cd08685 C2_RGS-like C2 domain 99.7 3.4E-17 7.3E-22 147.0 11.8 101 362-473 12-119 (119)
77 cd08680 C2_Kibra C2 domain fou 99.7 4E-17 8.7E-22 146.8 12.3 112 26-143 4-124 (124)
78 cd08385 C2A_Synaptotagmin-1-5- 99.7 6.7E-17 1.5E-21 147.2 13.9 103 361-474 15-123 (124)
79 cd08678 C2_C21orf25-like C2 do 99.7 1E-16 2.2E-21 146.1 15.1 116 40-163 1-121 (126)
80 cd04039 C2_PSD C2 domain prese 99.7 4.1E-17 9E-22 143.5 12.0 96 362-465 1-99 (108)
81 cd04046 C2_Calpain C2 domain p 99.7 1.5E-16 3.4E-21 144.8 16.1 118 37-162 2-122 (126)
82 cd08688 C2_KIAA0528-like C2 do 99.7 2.4E-17 5.2E-22 146.4 10.3 102 364-475 1-109 (110)
83 cd04010 C2B_RasA3 C2 domain se 99.7 4.5E-17 9.9E-22 151.0 11.9 116 363-491 1-147 (148)
84 cd04030 C2C_KIAA1228 C2 domain 99.7 7.9E-17 1.7E-21 147.4 13.3 105 361-474 15-127 (127)
85 cd04050 C2B_Synaptotagmin-like 99.7 6.7E-17 1.4E-21 142.3 12.1 99 363-475 1-102 (105)
86 cd04031 C2A_RIM1alpha C2 domai 99.7 1.1E-16 2.3E-21 146.2 13.5 102 361-474 15-125 (125)
87 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.1E-16 4.6E-21 142.8 15.1 116 40-160 2-120 (121)
88 cd04014 C2_PKC_epsilon C2 doma 99.7 1.8E-16 3.8E-21 145.9 14.8 118 361-495 3-130 (132)
89 cd04010 C2B_RasA3 C2 domain se 99.7 8.8E-17 1.9E-21 149.1 12.6 102 40-147 2-124 (148)
90 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.7E-16 3.7E-21 144.7 14.2 103 361-474 15-124 (125)
91 cd08388 C2A_Synaptotagmin-4-11 99.7 2.2E-16 4.9E-21 143.8 14.7 103 361-474 15-127 (128)
92 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.3E-16 2.8E-21 145.3 13.2 112 26-144 6-123 (124)
93 cd08680 C2_Kibra C2 domain fou 99.7 1.4E-16 3E-21 143.3 12.8 105 358-473 10-124 (124)
94 cd04013 C2_SynGAP_like C2 doma 99.7 3E-16 6.6E-21 143.9 15.2 123 362-496 11-141 (146)
95 cd04031 C2A_RIM1alpha C2 domai 99.7 1.6E-16 3.4E-21 145.0 13.3 112 27-144 5-125 (125)
96 cd04017 C2D_Ferlin C2 domain f 99.7 3.6E-16 7.7E-21 144.3 15.2 118 363-495 2-133 (135)
97 cd08521 C2A_SLP C2 domain firs 99.7 2E-16 4.3E-21 144.0 13.3 104 360-473 12-123 (123)
98 cd08685 C2_RGS-like C2 domain 99.7 1.2E-16 2.6E-21 143.4 11.6 110 26-143 2-119 (119)
99 cd08382 C2_Smurf-like C2 domai 99.7 2.1E-16 4.6E-21 143.3 13.3 118 364-491 2-122 (123)
100 cd08373 C2A_Ferlin C2 domain f 99.7 3.6E-16 7.7E-21 142.9 14.7 114 368-496 2-118 (127)
101 cd04027 C2B_Munc13 C2 domain s 99.7 3.6E-16 7.7E-21 142.6 14.5 113 39-159 2-127 (127)
102 cd08373 C2A_Ferlin C2 domain f 99.7 4.3E-16 9.4E-21 142.3 15.1 114 44-164 2-118 (127)
103 cd08388 C2A_Synaptotagmin-4-11 99.7 2.7E-16 5.9E-21 143.3 13.3 115 25-144 5-127 (128)
104 cd04041 C2A_fungal C2 domain f 99.7 1.3E-16 2.8E-21 141.9 10.5 98 362-473 1-106 (111)
105 cd04018 C2C_Ferlin C2 domain t 99.7 2.1E-16 4.7E-21 146.7 12.3 105 363-475 1-125 (151)
106 cd04030 C2C_KIAA1228 C2 domain 99.7 3.7E-16 8E-21 143.0 13.6 112 26-144 6-127 (127)
107 cd04039 C2_PSD C2 domain prese 99.7 3.1E-16 6.7E-21 138.0 12.4 94 38-131 1-100 (108)
108 cd04011 C2B_Ferlin C2 domain s 99.7 2.9E-16 6.3E-21 139.8 12.4 107 197-309 1-111 (111)
109 cd08382 C2_Smurf-like C2 domai 99.7 6E-16 1.3E-20 140.3 14.5 114 40-159 2-122 (123)
110 cd04051 C2_SRC2_like C2 domain 99.7 2.2E-16 4.8E-21 143.9 11.8 118 39-157 1-125 (125)
111 cd08688 C2_KIAA0528-like C2 do 99.7 3.1E-16 6.7E-21 139.2 12.1 104 40-145 1-109 (110)
112 cd08389 C2A_Synaptotagmin-14_1 99.7 4.8E-16 1E-20 140.9 13.2 102 361-474 15-123 (124)
113 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.5E-16 1.2E-20 141.4 13.6 113 26-145 6-125 (125)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 3.5E-16 7.7E-21 148.2 12.7 128 323-474 1-137 (162)
115 cd08389 C2A_Synaptotagmin-14_1 99.7 4.6E-16 1E-20 141.0 12.7 113 25-145 5-124 (124)
116 cd08407 C2B_Synaptotagmin-13 C 99.7 5.8E-16 1.3E-20 141.6 13.4 106 359-475 12-125 (138)
117 cd04041 C2A_fungal C2 domain f 99.7 3.1E-16 6.8E-21 139.4 10.7 100 38-145 1-108 (111)
118 cd08521 C2A_SLP C2 domain firs 99.7 6.5E-16 1.4E-20 140.5 12.9 111 26-143 4-123 (123)
119 cd04038 C2_ArfGAP C2 domain pr 99.7 7.8E-16 1.7E-20 142.4 13.3 91 361-463 1-91 (145)
120 cd08406 C2B_Synaptotagmin-12 C 99.7 9.3E-16 2E-20 140.5 13.5 104 359-475 12-123 (136)
121 cd08690 C2_Freud-1 C2 domain f 99.7 1.6E-15 3.4E-20 140.7 15.0 117 364-494 4-137 (155)
122 cd04044 C2A_Tricalbin-like C2 99.7 1.1E-15 2.4E-20 139.2 13.9 120 37-163 1-124 (124)
123 cd04014 C2_PKC_epsilon C2 doma 99.7 2.2E-15 4.8E-20 138.6 15.9 115 38-163 4-130 (132)
124 cd08390 C2A_Synaptotagmin-15-1 99.7 1.4E-15 2.9E-20 138.4 14.2 105 360-474 12-122 (123)
125 cd04043 C2_Munc13_fungal C2 do 99.7 1.4E-15 3E-20 139.0 14.2 113 363-494 2-121 (126)
126 cd04032 C2_Perforin C2 domain 99.7 7.4E-16 1.6E-20 138.8 12.1 95 358-464 24-120 (127)
127 cd04051 C2_SRC2_like C2 domain 99.7 5.8E-16 1.3E-20 141.2 11.5 113 363-489 1-125 (125)
128 cd04043 C2_Munc13_fungal C2 do 99.7 2.5E-15 5.4E-20 137.2 15.6 118 39-164 2-123 (126)
129 cd08390 C2A_Synaptotagmin-15-1 99.7 1.6E-15 3.4E-20 138.0 13.5 114 27-145 3-123 (123)
130 cd04045 C2C_Tricalbin-like C2 99.6 1E-15 2.3E-20 137.7 11.9 103 362-476 1-104 (120)
131 cd04049 C2_putative_Elicitor-r 99.6 1.2E-15 2.6E-20 138.8 12.3 103 362-475 1-108 (124)
132 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.3E-15 2.8E-20 144.4 12.8 105 36-145 25-138 (162)
133 cd08406 C2B_Synaptotagmin-12 C 99.6 3.9E-16 8.5E-21 143.0 8.8 113 26-147 5-125 (136)
134 cd08407 C2B_Synaptotagmin-13 C 99.6 1.3E-15 2.8E-20 139.4 12.1 99 27-125 4-112 (138)
135 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.3E-16 1.2E-20 143.1 9.7 115 27-148 2-124 (133)
136 cd08676 C2A_Munc13-like C2 dom 99.6 1.5E-15 3.3E-20 141.2 12.4 102 33-143 23-153 (153)
137 PLN03008 Phospholipase D delta 99.6 1.8E-15 4E-20 169.8 14.4 106 383-497 74-180 (868)
138 cd04040 C2D_Tricalbin-like C2 99.6 2.8E-15 6.2E-20 134.5 12.8 112 364-489 1-114 (115)
139 cd04032 C2_Perforin C2 domain 99.6 2E-15 4.4E-20 136.0 11.6 95 34-129 24-120 (127)
140 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.2E-15 2.7E-20 141.0 10.5 102 361-475 14-123 (136)
141 cd04026 C2_PKC_alpha_gamma C2 99.6 2.6E-15 5.6E-20 138.1 12.5 102 362-475 13-121 (131)
142 cd04018 C2C_Ferlin C2 domain t 99.6 3E-15 6.5E-20 139.0 13.0 107 40-147 2-127 (151)
143 cd04049 C2_putative_Elicitor-r 99.6 3.4E-15 7.4E-20 135.9 12.9 104 38-146 1-109 (124)
144 cd04038 C2_ArfGAP C2 domain pr 99.6 2.9E-15 6.2E-20 138.6 12.4 91 37-129 1-92 (145)
145 cd08402 C2B_Synaptotagmin-1 C2 99.6 4.5E-15 9.8E-20 137.3 13.5 105 358-475 11-123 (136)
146 cd08692 C2B_Tac2-N C2 domain s 99.6 6.5E-15 1.4E-19 132.5 13.9 106 358-475 10-123 (135)
147 KOG0696 Serine/threonine prote 99.6 2.8E-16 6.1E-21 159.8 5.1 105 37-147 179-290 (683)
148 cd08410 C2B_Synaptotagmin-17 C 99.6 6.4E-15 1.4E-19 135.8 13.5 105 359-475 11-123 (135)
149 cd08675 C2B_RasGAP C2 domain s 99.6 3.2E-15 6.9E-20 137.8 11.3 102 40-147 1-122 (137)
150 cd08383 C2A_RasGAP C2 domain ( 99.6 6.6E-15 1.4E-19 132.6 13.2 112 364-493 2-117 (117)
151 cd04009 C2B_Munc13-like C2 dom 99.6 4.9E-15 1.1E-19 136.3 12.4 92 361-463 15-118 (133)
152 cd08676 C2A_Munc13-like C2 dom 99.6 3.2E-15 6.9E-20 139.1 11.1 100 358-473 24-153 (153)
153 cd04021 C2_E3_ubiquitin_ligase 99.6 1.2E-14 2.6E-19 132.1 14.6 118 39-159 3-124 (125)
154 cd04009 C2B_Munc13-like C2 dom 99.6 4.9E-15 1.1E-19 136.3 12.0 103 27-129 5-119 (133)
155 cd04021 C2_E3_ubiquitin_ligase 99.6 1.1E-14 2.4E-19 132.2 14.0 116 363-491 3-124 (125)
156 cd08675 C2B_RasGAP C2 domain s 99.6 3.4E-15 7.4E-20 137.6 10.7 103 364-478 1-123 (137)
157 cd08405 C2B_Synaptotagmin-7 C2 99.6 2E-15 4.3E-20 139.7 9.3 103 360-475 13-123 (136)
158 cd08690 C2_Freud-1 C2 domain f 99.6 1.5E-14 3.2E-19 134.2 15.0 118 40-163 4-138 (155)
159 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.5E-15 5.4E-20 138.6 9.8 104 359-475 10-121 (133)
160 cd04045 C2C_Tricalbin-like C2 99.6 1.1E-14 2.4E-19 131.0 13.7 104 38-148 1-106 (120)
161 cd08408 C2B_Synaptotagmin-14_1 99.6 5.9E-15 1.3E-19 136.0 11.9 116 27-148 4-128 (138)
162 cd08408 C2B_Synaptotagmin-14_1 99.6 1.4E-14 3.1E-19 133.4 13.9 105 359-475 12-125 (138)
163 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.6E-15 5.7E-20 138.8 8.9 115 25-148 4-126 (136)
164 cd08692 C2B_Tac2-N C2 domain s 99.6 9.7E-15 2.1E-19 131.4 12.2 101 26-126 2-110 (135)
165 cd04040 C2D_Tricalbin-like C2 99.6 1.2E-14 2.5E-19 130.6 12.8 111 40-156 1-113 (115)
166 cd08410 C2B_Synaptotagmin-17 C 99.6 2.6E-15 5.6E-20 138.4 8.7 115 26-148 4-126 (135)
167 cd08402 C2B_Synaptotagmin-1 C2 99.6 3E-15 6.5E-20 138.5 8.8 114 27-147 4-125 (136)
168 cd08691 C2_NEDL1-like C2 domai 99.6 2.9E-14 6.3E-19 130.4 15.0 116 39-159 2-136 (137)
169 cd08691 C2_NEDL1-like C2 domai 99.6 2.3E-14 5.1E-19 131.1 14.3 118 363-491 2-136 (137)
170 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.7E-14 3.8E-19 133.0 13.5 104 359-475 11-122 (134)
171 cd08409 C2B_Synaptotagmin-15 C 99.6 5.8E-15 1.3E-19 136.2 10.1 104 360-475 13-124 (137)
172 cd04037 C2E_Ferlin C2 domain f 99.6 9.3E-15 2E-19 132.6 11.1 91 39-129 1-94 (124)
173 cd04052 C2B_Tricalbin-like C2 99.6 1.3E-14 2.8E-19 128.9 11.6 99 382-495 9-110 (111)
174 cd08409 C2B_Synaptotagmin-15 C 99.6 1.7E-14 3.7E-19 133.2 12.3 113 26-146 5-125 (137)
175 cd04026 C2_PKC_alpha_gamma C2 99.6 2.3E-14 5.1E-19 131.7 13.1 112 26-147 5-123 (131)
176 cd00276 C2B_Synaptotagmin C2 d 99.6 6.2E-15 1.3E-19 136.3 9.2 103 361-476 13-123 (134)
177 cd08405 C2B_Synaptotagmin-7 C2 99.6 7E-15 1.5E-19 136.1 9.1 115 25-148 4-126 (136)
178 cd04037 C2E_Ferlin C2 domain f 99.6 2.2E-14 4.7E-19 130.1 12.1 89 363-462 1-92 (124)
179 KOG0696 Serine/threonine prote 99.6 2.1E-15 4.7E-20 153.5 5.7 102 362-475 180-288 (683)
180 cd08383 C2A_RasGAP C2 domain ( 99.6 5.2E-14 1.1E-18 126.8 13.9 111 40-161 2-117 (117)
181 cd08403 C2B_Synaptotagmin-3-5- 99.6 2.4E-14 5.3E-19 132.1 11.7 114 26-148 4-125 (134)
182 cd00275 C2_PLC_like C2 domain 99.6 1E-13 2.2E-18 127.1 15.2 116 38-161 2-127 (128)
183 cd00276 C2B_Synaptotagmin C2 d 99.5 1.1E-14 2.5E-19 134.5 8.7 115 26-149 4-126 (134)
184 PLN03200 cellulose synthase-in 99.5 1.3E-14 2.7E-19 178.1 11.4 119 359-495 1977-2101(2102)
185 cd04048 C2A_Copine C2 domain f 99.5 3.1E-14 6.7E-19 128.6 11.0 98 367-475 5-114 (120)
186 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1E-13 2.3E-18 125.9 14.0 98 361-470 14-120 (123)
187 cd04013 C2_SynGAP_like C2 doma 99.5 1.5E-13 3.2E-18 126.2 14.7 115 38-163 11-140 (146)
188 cd04052 C2B_Tricalbin-like C2 99.5 5.4E-14 1.2E-18 125.0 11.4 101 55-163 9-110 (111)
189 cd08686 C2_ABR C2 domain in th 99.5 1.3E-13 2.8E-18 120.5 13.1 91 364-465 1-99 (118)
190 cd00275 C2_PLC_like C2 domain 99.5 2.2E-13 4.7E-18 124.9 14.5 117 363-493 3-127 (128)
191 KOG1013 Synaptic vesicle prote 99.5 4.9E-15 1.1E-19 146.8 3.7 223 26-288 83-327 (362)
192 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.6E-13 3.5E-18 124.6 13.3 103 25-129 4-114 (123)
193 cd04048 C2A_Copine C2 domain f 99.5 2.1E-13 4.5E-18 123.3 11.2 97 44-145 6-114 (120)
194 PLN03008 Phospholipase D delta 99.5 2.4E-13 5.2E-18 153.0 13.9 124 37-166 13-181 (868)
195 cd08686 C2_ABR C2 domain in th 99.5 2.8E-13 6E-18 118.4 10.6 78 40-124 1-91 (118)
196 cd04047 C2B_Copine C2 domain s 99.4 3.4E-13 7.3E-18 119.9 9.7 94 366-473 4-108 (110)
197 KOG1013 Synaptic vesicle prote 99.4 1.2E-13 2.5E-18 137.1 5.1 220 201-461 94-329 (362)
198 PLN03200 cellulose synthase-in 99.4 4.5E-13 9.8E-18 164.7 11.1 119 35-162 1977-2100(2102)
199 cd04047 C2B_Copine C2 domain s 99.4 1.7E-12 3.8E-17 115.3 10.9 87 42-129 4-101 (110)
200 KOG1011 Neurotransmitter relea 99.4 5.2E-13 1.1E-17 141.6 7.7 128 361-494 294-424 (1283)
201 PF06398 Pex24p: Integral pero 99.4 6.1E-12 1.3E-16 136.2 16.0 179 544-742 1-194 (359)
202 PF00168 C2: C2 domain; Inter 99.4 3E-12 6.5E-17 107.8 9.5 81 40-120 1-85 (85)
203 KOG1327 Copine [Signal transdu 99.4 1.1E-11 2.3E-16 133.2 15.8 242 232-526 41-320 (529)
204 KOG1326 Membrane-associated pr 99.4 6.1E-13 1.3E-17 148.7 5.8 90 360-460 611-703 (1105)
205 KOG1011 Neurotransmitter relea 99.3 2.7E-12 5.9E-17 136.3 8.1 120 39-166 296-428 (1283)
206 PF00168 C2: C2 domain; Inter 99.3 1.3E-11 2.9E-16 103.8 9.1 82 202-284 1-85 (85)
207 cd08374 C2F_Ferlin C2 domain s 99.2 6.1E-11 1.3E-15 106.9 10.5 94 363-465 1-125 (133)
208 PLN02270 phospholipase D alpha 99.2 1.1E-10 2.3E-15 132.0 13.9 127 362-497 8-151 (808)
209 cd00030 C2 C2 domain. The C2 d 99.2 9.7E-11 2.1E-15 101.5 10.4 99 364-473 1-102 (102)
210 cd00030 C2 C2 domain. The C2 d 99.1 3.4E-10 7.3E-15 98.1 11.3 99 40-143 1-102 (102)
211 smart00239 C2 Protein kinase C 99.1 2.8E-10 6.2E-15 98.7 10.8 92 363-465 1-96 (101)
212 smart00239 C2 Protein kinase C 99.1 4.8E-10 1E-14 97.3 11.4 91 40-130 2-96 (101)
213 PLN02223 phosphoinositide phos 99.1 1.5E-09 3.2E-14 118.2 14.1 116 38-161 409-536 (537)
214 cd08374 C2F_Ferlin C2 domain s 99.0 1.2E-09 2.6E-14 98.5 10.3 91 40-130 2-125 (133)
215 PLN02223 phosphoinositide phos 99.0 2.9E-09 6.3E-14 115.9 14.3 106 361-477 408-521 (537)
216 KOG1031 Predicted Ca2+-depende 99.0 1.4E-09 3.1E-14 114.6 10.6 120 362-494 3-136 (1169)
217 PLN02270 phospholipase D alpha 99.0 4.1E-09 8.8E-14 119.4 14.2 122 37-164 7-150 (808)
218 PLN02952 phosphoinositide phos 99.0 5.1E-09 1.1E-13 116.7 14.3 116 38-161 470-598 (599)
219 PLN02952 phosphoinositide phos 99.0 7.5E-09 1.6E-13 115.3 14.8 120 361-494 469-597 (599)
220 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2.5E-09 5.4E-14 90.0 8.1 85 40-129 1-89 (109)
221 KOG1328 Synaptic vesicle prote 98.9 2.2E-10 4.7E-15 123.9 1.1 125 34-164 110-303 (1103)
222 PLN02230 phosphoinositide phos 98.9 1.2E-08 2.6E-13 113.5 12.7 116 38-161 469-597 (598)
223 cd08689 C2_fungal_Pkc1p C2 dom 98.9 9.9E-09 2.1E-13 86.4 8.1 86 364-462 1-87 (109)
224 PF11696 DUF3292: Protein of u 98.8 9.8E-08 2.1E-12 105.2 17.7 208 545-760 87-390 (642)
225 PLN02230 phosphoinositide phos 98.8 3E-08 6.5E-13 110.4 13.7 121 361-493 468-597 (598)
226 PLN02222 phosphoinositide phos 98.8 3.7E-08 8E-13 109.5 14.1 115 38-160 452-579 (581)
227 PLN02222 phosphoinositide phos 98.8 5.2E-08 1.1E-12 108.4 14.7 121 361-493 451-580 (581)
228 PLN02228 Phosphoinositide phos 98.8 5E-08 1.1E-12 108.2 14.5 123 361-495 430-562 (567)
229 PLN02228 Phosphoinositide phos 98.8 4.5E-08 9.7E-13 108.6 13.6 118 38-163 431-562 (567)
230 KOG0169 Phosphoinositide-speci 98.8 4.5E-08 9.8E-13 108.7 12.5 118 363-493 617-743 (746)
231 KOG0169 Phosphoinositide-speci 98.7 5E-08 1.1E-12 108.3 11.5 117 38-162 616-744 (746)
232 KOG1031 Predicted Ca2+-depende 98.7 3.4E-08 7.4E-13 104.5 8.3 124 38-162 3-136 (1169)
233 cd08683 C2_C2cd3 C2 domain fou 98.7 1.8E-08 3.9E-13 87.2 4.9 110 364-473 1-143 (143)
234 KOG1327 Copine [Signal transdu 98.7 3.5E-07 7.7E-12 98.9 14.3 179 71-292 42-236 (529)
235 KOG1328 Synaptic vesicle prote 98.6 1.9E-08 4E-13 109.3 3.2 100 27-128 938-1049(1103)
236 KOG0905 Phosphoinositide 3-kin 98.6 5.7E-08 1.2E-12 110.8 7.1 123 15-146 1504-1636(1639)
237 KOG1264 Phospholipase C [Lipid 98.5 3.6E-07 7.8E-12 100.6 10.5 99 362-475 1065-1171(1267)
238 KOG1264 Phospholipase C [Lipid 98.5 3.1E-07 6.7E-12 101.1 9.7 115 39-162 1066-1189(1267)
239 PLN02352 phospholipase D epsil 98.5 7E-07 1.5E-11 101.4 12.3 119 362-498 10-134 (758)
240 PF12416 DUF3668: Cep120 prote 98.4 0.00013 2.9E-09 76.5 26.3 243 40-292 2-295 (340)
241 PLN02352 phospholipase D epsil 98.3 3.6E-06 7.9E-11 95.7 12.8 117 38-165 10-133 (758)
242 KOG0905 Phosphoinositide 3-kin 98.3 5.8E-07 1.2E-11 102.9 6.2 102 362-474 1524-1634(1639)
243 PF12416 DUF3668: Cep120 prote 97.9 0.0023 5.1E-08 67.3 21.6 238 202-462 2-294 (340)
244 cd08684 C2A_Tac2-N C2 domain f 97.8 2.8E-05 6E-10 62.7 4.0 88 41-129 2-95 (103)
245 PLN02964 phosphatidylserine de 97.7 6.9E-05 1.5E-09 85.0 6.9 89 359-465 51-141 (644)
246 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00018 4E-09 62.8 6.7 100 203-306 2-143 (143)
247 KOG2060 Rab3 effector RIM1 and 97.4 0.00014 3E-09 74.8 4.1 109 359-477 266-381 (405)
248 KOG3837 Uncharacterized conser 97.4 0.00012 2.5E-09 75.8 3.5 118 39-162 368-503 (523)
249 PLN02964 phosphatidylserine de 97.4 0.0003 6.4E-09 80.0 6.6 89 197-293 51-140 (644)
250 cd08684 C2A_Tac2-N C2 domain f 97.3 0.00037 8.1E-09 56.4 4.2 87 203-292 2-94 (103)
251 KOG3837 Uncharacterized conser 97.1 0.00047 1E-08 71.5 3.8 120 361-494 366-503 (523)
252 KOG2060 Rab3 effector RIM1 and 96.8 0.00089 1.9E-08 69.0 3.3 112 31-147 262-381 (405)
253 PF15627 CEP76-C2: CEP76 C2 do 96.7 0.023 4.9E-07 52.5 11.0 126 361-495 8-151 (156)
254 cd08398 C2_PI3K_class_I_alpha 96.0 0.11 2.3E-06 48.8 11.7 107 31-164 4-124 (158)
255 PF15627 CEP76-C2: CEP76 C2 do 95.9 0.11 2.3E-06 48.2 11.0 126 35-163 6-151 (156)
256 cd08398 C2_PI3K_class_I_alpha 95.6 0.093 2E-06 49.3 9.7 89 362-461 8-106 (158)
257 cd08693 C2_PI3K_class_I_beta_d 95.6 0.078 1.7E-06 50.8 9.4 107 31-162 4-136 (173)
258 KOG1265 Phospholipase C [Lipid 95.5 0.033 7.2E-07 63.5 7.4 95 200-309 703-806 (1189)
259 PF08372 PRT_C: Plant phosphor 95.5 0.056 1.2E-06 50.0 7.6 41 563-603 70-110 (156)
260 cd08693 C2_PI3K_class_I_beta_d 95.2 0.15 3.2E-06 48.9 10.0 95 362-461 8-120 (173)
261 cd08397 C2_PI3K_class_III C2 d 94.9 0.26 5.6E-06 46.4 10.4 92 57-168 28-129 (159)
262 cd08380 C2_PI3K_like C2 domain 94.7 0.3 6.6E-06 46.0 10.4 107 39-166 9-127 (156)
263 PF10358 NT-C2: N-terminal C2 94.3 1.6 3.5E-05 40.2 14.3 119 37-164 6-137 (143)
264 PF10358 NT-C2: N-terminal C2 94.3 1 2.2E-05 41.6 12.9 115 362-495 7-136 (143)
265 KOG1265 Phospholipase C [Lipid 94.3 0.072 1.6E-06 60.9 5.9 85 361-464 702-797 (1189)
266 PF02453 Reticulon: Reticulon; 94.1 0.0099 2.1E-07 57.0 -1.1 62 680-741 88-149 (169)
267 cd08397 C2_PI3K_class_III C2 d 93.8 0.32 7E-06 45.8 8.6 70 384-461 28-107 (159)
268 cd08399 C2_PI3K_class_I_gamma 93.7 0.63 1.4E-05 44.5 10.4 96 362-461 10-122 (178)
269 cd08380 C2_PI3K_like C2 domain 93.6 0.56 1.2E-05 44.1 9.9 90 362-461 8-107 (156)
270 cd08687 C2_PKN-like C2 domain 92.6 1.3 2.8E-05 36.7 8.9 64 59-127 9-73 (98)
271 KOG1452 Predicted Rho GTPase-a 92.3 0.34 7.4E-06 49.0 6.4 77 359-437 48-125 (442)
272 cd08399 C2_PI3K_class_I_gamma 91.7 2.3 4.9E-05 40.8 11.1 77 30-110 5-89 (178)
273 cd04012 C2A_PI3K_class_II C2 d 91.6 1.2 2.6E-05 42.6 9.4 105 39-163 9-136 (171)
274 PF00792 PI3K_C2: Phosphoinosi 91.5 2.3 5.1E-05 39.2 10.9 74 73-166 23-105 (142)
275 cd04012 C2A_PI3K_class_II C2 d 91.2 1 2.2E-05 43.2 8.3 90 201-290 9-119 (171)
276 PF00792 PI3K_C2: Phosphoinosi 90.4 1.9 4E-05 39.9 9.2 66 388-461 4-85 (142)
277 PF11618 DUF3250: Protein of u 87.2 4.3 9.3E-05 35.3 8.4 94 389-494 2-105 (107)
278 smart00142 PI3K_C2 Phosphoinos 86.8 3.6 7.9E-05 35.4 7.9 71 40-110 13-92 (100)
279 cd08687 C2_PKN-like C2 domain 86.6 8 0.00017 32.2 9.1 85 384-493 7-92 (98)
280 KOG1452 Predicted Rho GTPase-a 86.3 1.5 3.3E-05 44.6 5.8 83 31-115 44-130 (442)
281 KOG1329 Phospholipase D1 [Lipi 85.5 0.96 2.1E-05 52.7 4.6 105 384-496 136-242 (887)
282 cd08694 C2_Dock-A C2 domains f 85.3 8.5 0.00019 37.2 10.2 41 71-111 54-96 (196)
283 cd08695 C2_Dock-B C2 domains f 84.3 9.1 0.0002 37.0 9.9 40 71-110 54-95 (189)
284 PF15625 CC2D2AN-C2: CC2D2A N- 83.8 22 0.00047 33.9 12.4 88 220-309 36-125 (168)
285 smart00142 PI3K_C2 Phosphoinos 82.7 7.3 0.00016 33.5 7.9 69 364-435 13-91 (100)
286 PF14429 DOCK-C2: C2 domain in 81.8 4.8 0.0001 39.0 7.2 58 398-460 60-120 (184)
287 PF11618 DUF3250: Protein of u 77.1 7.2 0.00016 33.9 6.0 95 62-161 2-104 (107)
288 PF08151 FerI: FerI (NUC094) d 75.8 7.1 0.00015 31.2 5.1 43 286-335 2-44 (72)
289 cd08694 C2_Dock-A C2 domains f 74.9 10 0.00022 36.7 6.9 59 397-459 53-114 (196)
290 PF06398 Pex24p: Integral pero 74.3 6.8 0.00015 42.5 6.5 49 672-720 9-60 (359)
291 cd08695 C2_Dock-B C2 domains f 73.4 9 0.0002 37.0 6.2 56 398-459 54-112 (189)
292 PF14429 DOCK-C2: C2 domain in 72.4 12 0.00026 36.2 7.1 55 71-125 60-120 (184)
293 PF15625 CC2D2AN-C2: CC2D2A N- 71.8 20 0.00044 34.1 8.2 69 386-463 37-108 (168)
294 cd08696 C2_Dock-C C2 domains f 71.4 16 0.00036 35.0 7.4 62 397-460 54-118 (179)
295 PF08151 FerI: FerI (NUC094) d 69.9 9.5 0.00021 30.5 4.6 50 122-173 2-53 (72)
296 KOG3543 Ca2+-dependent activat 69.2 28 0.00061 39.0 9.4 117 362-492 341-457 (1218)
297 cd08697 C2_Dock-D C2 domains f 67.7 29 0.00062 33.5 8.2 64 397-460 56-123 (185)
298 PF11696 DUF3292: Protein of u 67.2 15 0.00033 41.9 7.2 81 661-750 90-171 (642)
299 PTZ00447 apical membrane antig 66.5 61 0.0013 33.8 10.6 109 362-491 58-170 (508)
300 KOG0904 Phosphatidylinositol 3 65.3 51 0.0011 38.9 10.8 106 362-473 343-472 (1076)
301 KOG2419 Phosphatidylserine dec 65.2 1.5 3.3E-05 48.7 -1.0 191 202-462 282-481 (975)
302 PTZ00447 apical membrane antig 61.0 1.1E+02 0.0024 32.0 11.2 114 197-331 55-171 (508)
303 cd08679 C2_DOCK180_related C2 57.9 32 0.00069 33.1 6.8 59 398-460 54-115 (178)
304 KOG0694 Serine/threonine prote 55.9 15 0.00033 42.1 4.6 94 57-162 26-121 (694)
305 PF06219 DUF1005: Protein of u 55.6 1.2E+02 0.0026 32.9 10.8 110 385-496 35-169 (460)
306 cd08696 C2_Dock-C C2 domains f 54.3 43 0.00094 32.1 6.8 40 232-272 54-95 (179)
307 KOG3543 Ca2+-dependent activat 54.1 1.4E+02 0.0031 33.7 11.4 100 38-148 341-444 (1218)
308 cd08679 C2_DOCK180_related C2 52.0 40 0.00086 32.4 6.4 52 236-288 56-114 (178)
309 cd05137 RasGAP_CLA2_BUD2 CLA2/ 51.5 17 0.00037 39.7 4.1 44 450-495 1-45 (395)
310 KOG1329 Phospholipase D1 [Lipi 50.0 35 0.00077 40.4 6.5 85 59-149 138-225 (887)
311 PF14909 SPATA6: Spermatogenes 49.7 96 0.0021 28.3 7.8 87 40-129 4-102 (140)
312 KOG3385 V-SNARE [Intracellular 48.3 20 0.00044 31.1 3.1 31 661-691 38-68 (118)
313 cd08697 C2_Dock-D C2 domains f 46.5 72 0.0016 30.8 7.0 40 232-272 56-97 (185)
314 PF07162 B9-C2: Ciliary basal 43.8 2.1E+02 0.0045 27.2 9.8 77 365-458 5-101 (168)
315 cd01459 vWA_copine_like VWA Co 43.0 27 0.00059 35.6 3.8 39 498-536 37-76 (254)
316 PF10409 PTEN_C2: C2 domain of 41.6 2.6E+02 0.0057 25.1 10.0 89 202-291 6-98 (134)
317 PF04842 DUF639: Plant protein 39.3 50 0.0011 38.1 5.4 64 675-738 489-555 (683)
318 PF09726 Macoilin: Transmembra 39.2 59 0.0013 38.4 6.3 16 718-733 91-106 (697)
319 PF07162 B9-C2: Ciliary basal 39.2 3.1E+02 0.0067 25.9 10.2 80 202-287 4-101 (168)
320 PF14924 DUF4497: Protein of u 39.1 76 0.0016 27.8 5.6 64 424-495 28-105 (112)
321 PF01544 CorA: CorA-like Mg2+ 38.3 1.4E+02 0.003 30.9 8.6 67 666-738 196-262 (292)
322 PF08653 DASH_Dam1: DASH compl 37.7 1.8E+02 0.0039 22.2 6.5 46 664-712 3-48 (58)
323 PF10409 PTEN_C2: C2 domain of 37.7 3E+02 0.0064 24.7 9.6 90 363-462 5-98 (134)
324 PF06219 DUF1005: Protein of u 37.2 2.8E+02 0.0061 30.2 10.1 104 59-163 36-168 (460)
325 KOG1792 Reticulon [Intracellul 37.1 1.4E+02 0.003 30.0 7.7 39 682-720 130-168 (230)
326 PRK09458 pspB phage shock prot 36.8 1.2E+02 0.0026 24.4 5.7 23 666-688 42-64 (75)
327 PF04281 Tom22: Mitochondrial 36.8 2E+02 0.0043 26.3 7.8 59 660-724 49-109 (137)
328 PF02453 Reticulon: Reticulon; 36.5 12 0.00025 35.5 0.0 27 692-718 1-27 (169)
329 PF00957 Synaptobrevin: Synapt 36.5 1.5E+02 0.0032 24.6 6.7 29 675-703 40-68 (89)
330 PF14909 SPATA6: Spermatogenes 36.5 3.4E+02 0.0074 24.9 9.6 85 202-291 4-100 (140)
331 KOG4269 Rac GTPase-activating 33.6 19 0.00042 42.2 1.1 67 37-110 758-829 (1112)
332 KOG0860 Synaptobrevin/VAMP-lik 33.3 1.6E+02 0.0035 25.9 6.3 23 684-706 75-97 (116)
333 KOG4111 Translocase of outer m 31.7 1.4E+02 0.0029 26.9 5.7 48 660-708 40-89 (136)
334 KOG0694 Serine/threonine prote 30.5 21 0.00046 40.9 0.8 96 220-335 27-123 (694)
335 PF10779 XhlA: Haemolysin XhlA 29.6 2.9E+02 0.0062 21.9 7.6 35 664-698 18-52 (71)
336 PF14851 FAM176: FAM176 family 29.5 94 0.002 28.9 4.7 12 584-595 16-27 (153)
337 PF15202 Adipogenin: Adipogeni 28.5 84 0.0018 24.3 3.4 17 608-624 23-39 (81)
338 PF14963 CAML: Calcium signal- 27.0 3.5E+02 0.0077 27.2 8.2 35 591-625 169-203 (263)
339 PF08060 NOSIC: NOSIC (NUC001) 25.6 1.7E+02 0.0037 21.7 4.7 32 676-707 7-38 (53)
340 KOG2419 Phosphatidylserine dec 25.5 16 0.00036 41.0 -1.1 75 361-436 279-356 (975)
341 KOG0904 Phosphatidylinositol 3 24.5 1.1E+02 0.0025 36.2 5.1 67 39-108 344-421 (1076)
342 PHA02650 hypothetical protein; 24.1 2.6E+02 0.0057 22.6 5.5 16 683-698 18-33 (81)
343 KOG4027 Uncharacterized conser 23.2 3.6E+02 0.0078 25.1 7.0 68 384-459 24-109 (187)
344 PHA02844 putative transmembran 22.6 2.4E+02 0.0053 22.5 5.0 17 683-699 18-34 (75)
345 PHA01159 hypothetical protein 22.0 3.8E+02 0.0083 23.5 6.6 33 668-700 5-37 (114)
346 PHA02975 hypothetical protein; 22.0 2.7E+02 0.0059 21.9 5.1 16 683-698 18-33 (69)
347 PF06667 PspB: Phage shock pro 21.7 2.9E+02 0.0063 22.3 5.5 17 667-683 43-59 (75)
348 PF10158 LOH1CR12: Tumour supp 20.7 1.8E+02 0.004 26.3 4.7 32 665-696 86-117 (131)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=6e-45 Score=329.47 Aligned_cols=156 Identities=79% Similarity=1.402 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004297 608 LPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLAT 687 (763)
Q Consensus 608 ~p~~~l~~~~~~~~~y~~~~~~~~~~~~~~s~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~ 687 (763)
+|++++++|++++|||+.|++.|+|+|.++|+++.+++||+|||+|.+|++++++.+++||+++++++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcCCCCCCchhhhhhcCCCCccCCC
Q 004297 688 QGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763 (763)
Q Consensus 688 ~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r~i~l~~g~~~~~~p~~r~~~p~~~~~~~~r~ps~~~~~~ 763 (763)
++||++|+|+|+||++|.+++++|+++++++|++|+|+++++||+|++|||+||.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=261.12 Aligned_cols=399 Identities=19% Similarity=0.226 Sum_probs=299.0
Q ss_pred ccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCC
Q 004297 33 LVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (763)
Q Consensus 33 ~~~~~~~L~v~v~~a~~L~~~~--~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~ 109 (763)
.....|+|.|+|.+|++|...+ ..+..|||+++.+.+ ...+|++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 3567899999999999999887 578999999999877 567999999999999999999999864 688999999988
Q ss_pred CC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCCCCCCcccccccccccccccccc
Q 004297 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLAN 188 (763)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 188 (763)
.. +|+.+|++.++|+.|..+.. ...+-+.+.. +....|+|...+.|.+......... .+..+ .
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~----~~ne~~e~~~--~~k~vGrL~yDl~ffp~~e~k~~~~-~s~e~-------~-- 573 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPV----KKNELYEFLR--NTKNVGRLTYDLRFFPVIEDKKELK-GSVEP-------L-- 573 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccc----cccceeeeec--cCccceEEEEeeeeecccCCccccc-cccCC-------c--
Confidence 87 99999999999999987642 2233444443 3345799999988876433211100 00000 0
Q ss_pred ccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCccccceEEEEeeCCCCCeEEEE
Q 004297 189 IRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ-ALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILT 267 (763)
Q Consensus 189 ~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~-~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~ 267 (763)
.....|++.+++.++++|..... .....++++++..+ .+.|+.++. +.+|.||+++...+.+.....+.+.
T Consensus 574 ------ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 574 ------EDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ------ccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 01124789999999999976532 22233488888765 455577766 9999999999999988888899999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCC
Q 004297 268 VEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSS 347 (763)
Q Consensus 268 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~ 347 (763)
++|.. ..+.||+...+|.++..+ ......||++..+ +|+|.++....+.+...+.
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~-------------kg~I~~t~~W~Pi~~~~~~------ 700 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP-------------KGRIFITNYWKPIYNAGGS------ 700 (1227)
T ss_pred ecccc---cCceeccccccchHhhhc---cccceEEEEcCCC-------------cceEEEEeccceeeccccc------
Confidence 98864 567899888888887643 4457789999876 7899888866544322111
Q ss_pred CCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcE
Q 004297 348 DLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTV 426 (763)
Q Consensus 348 d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~ 426 (763)
+....+..++|.++|.|..|.+|... ...+++|||+++.+++. .+||.....++||.||+....++..+.+.
T Consensus 701 ----~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 701 ----SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred ----cceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 11122357789999999999999854 56789999999999775 68999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccC----CCeE---eeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET----DRVY---THSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 427 l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~----~~~~---~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+.++++|....+ .|..||.+.|+++++.. +... ..--+.......|.+..|.+.+..+|-+.
T Consensus 774 ~~l~~~~~~~sg--------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 774 LTLECMDYEESG--------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred Eeeeeecchhcc--------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999999876 89999999999999854 1111 00011111112234456889888888554
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=257.50 Aligned_cols=224 Identities=32% Similarity=0.494 Sum_probs=190.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEe--cCCCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSK--DRIQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~ 100 (763)
+++...+++-+...|.|+|++|++|+..+..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+ .++....
T Consensus 155 ~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~ 234 (421)
T KOG1028|consen 155 NLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRV 234 (421)
T ss_pred eEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCE
Confidence 55555555567789999999999999999778899999999987 468999999999999999999996 3467899
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEEEEEEcccCCCCCCccccccc
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAVWMGTQADEAFPEAWHSDA 177 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~ 177 (763)
|.+.|||.|++ +++++|++.++|..+..... ...|.+|.... .....|+|.+++.|.+
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p-------------- 295 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLP-------------- 295 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeec--------------
Confidence 99999999999 99999999999998886642 56799998864 1122389999998874
Q ss_pred cccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCccccceE
Q 004297 178 ATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDL 252 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f 252 (763)
..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+|||+|
T Consensus 296 --------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf 354 (421)
T KOG1028|consen 296 --------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETF 354 (421)
T ss_pred --------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccE
Confidence 2357999999999999999999999999999853 4577888776 9999999999
Q ss_pred EEEeeCC--CCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004297 253 MFVAAEP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (763)
Q Consensus 253 ~f~~~~~--~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 289 (763)
.|.+... ....+.|+|||++..+++++||+|.+....
T Consensus 355 ~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 355 VFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9988633 344799999999999999999999888764
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-25 Score=241.29 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=179.3
Q ss_pred ceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCccccceEEEEeeC--CCCCeEEEEEEEcc
Q 004297 198 KLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAE--PFEEHLILTVEDRV 272 (763)
Q Consensus 198 ~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~L~i~V~d~d 272 (763)
+...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||.|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3447999999999999999767899999999984 6789999887 9999999999999643 34668999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcc
Q 004297 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352 (763)
Q Consensus 273 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~ 352 (763)
.++++++||++.++|..+... .....|.++........ ...|+|.+.+++.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~~------~~~gel~~sL~Y~------------------- 294 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDSE------ELAGELLLSLCYL------------------- 294 (421)
T ss_pred CcccccEEEEEEecCcccccc----ccceeeeccccccCCcc------cccceEEEEEEee-------------------
Confidence 999999999999998877532 22567999987532211 1228999999873
Q ss_pred hhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeCC---C
Q 004297 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---C 424 (763)
Q Consensus 353 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~ 424 (763)
+..|.|+|.|++|++|..+ +..+.+||||++.+ ++ .+.+|.++++++||+|||.|.|.|... .
T Consensus 295 ------p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 295 ------PTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred ------cCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 3348999999999999988 66689999999966 33 247899999999999999999988742 4
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
..|.|+|||+|.++ .+++||++.+....
T Consensus 366 ~~l~l~V~d~d~~~--------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 366 VSLELTVWDHDTLG--------SNDLIGRCILGSDS 393 (421)
T ss_pred eEEEEEEEEccccc--------ccceeeEEEecCCC
Confidence 58999999999987 78899999998875
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.94 E-value=4.3e-24 Score=240.99 Aligned_cols=411 Identities=22% Similarity=0.291 Sum_probs=286.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDF 115 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~ 115 (763)
.|.+.+++.++++|.... .....-++++++.++ ...|+.++.+.+|.||+++...+.+.....+.+.++|.. ..+.
T Consensus 578 ~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 578 TGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred cceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 588999999999996543 122233488999885 566789999999999999999998877888999999876 4678
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCCCCCCccccccccccccccccccccccccc
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYL 195 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (763)
+|+...+|.++.... .....||++..+ +|+|.++..+.+-... ....+..+.
T Consensus 655 i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~-------------------~~~~s~~~~ 706 (1227)
T COG5038 655 IATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIYNA-------------------GGSSSKTVY 706 (1227)
T ss_pred eccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceeecc-------------------ccccceeee
Confidence 899889988888653 346789998854 3789888755432110 001122334
Q ss_pred cCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC
Q 004297 196 SPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (763)
Q Consensus 196 ~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (763)
....|.++|.|..|.++......+++|||+++.+++ .++||-.... +.||.|++....++..+ .+++.+..+|++..
T Consensus 707 ~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~s 784 (1227)
T COG5038 707 DTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEES 784 (1227)
T ss_pred cCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchhc
Confidence 467889999999999999888889999999999987 5677777655 99999999999998775 45699999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCC----------C----------------ceeEEccccccc---------cc-----
Q 004297 275 NKDEVLGKCMIPLQYVDKRLDHKPV----------N----------------TRWYNLEKHIVV---------EG----- 314 (763)
Q Consensus 275 ~~d~~iG~~~i~l~~l~~~~~~~~~----------~----------------~~w~~L~~~~~~---------~~----- 314 (763)
+.|..+|++.++++++..+.++... . ...|+....... ..
T Consensus 785 gddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~ 864 (1227)
T COG5038 785 GDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKS 864 (1227)
T ss_pred cccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHh
Confidence 9999999999999998864321100 0 001110000000 00
Q ss_pred --------c-------c------------ccC--------------CceeceE--------------EEEEEEcc-Cccc
Q 004297 315 --------E-------K------------KKD--------------TKFASRI--------------HMRICLEG-GYHV 338 (763)
Q Consensus 315 --------~-------~------------~~~--------------~~~~G~l--------------~l~l~~~~-~~~~ 338 (763)
+ + ..+ ....|-+ .+.+.++. .++.
T Consensus 865 ~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~ 944 (1227)
T COG5038 865 EKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQ 944 (1227)
T ss_pred hhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCce
Confidence 0 0 000 0001111 22222221 1100
Q ss_pred cCCCc--------c-----------c------------CCC-------C-----------Ccc-----h--hh----hc-
Q 004297 339 LDEST--------H-----------Y------------SSD-------L-----------RPT-----A--KQ----LW- 357 (763)
Q Consensus 339 ~~~~~--------~-----------~------------~~d-------~-----------~~~-----~--~~----~~- 357 (763)
...+. . + .+| + +|. + .. .|
T Consensus 945 i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~t 1024 (1227)
T COG5038 945 IVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYT 1024 (1227)
T ss_pred eeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEe
Confidence 00000 0 0 000 0 000 0 00 00
Q ss_pred -----------cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeC-CC
Q 004297 358 -----------KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFD-PC 424 (763)
Q Consensus 358 -----------~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~-~~ 424 (763)
-.+.|.|.|.+..|.||++. |.+|.+||||++.++++ .++|+++++|+||+|||.+.++|.. ..
T Consensus 1025 Pv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~ 1101 (1227)
T COG5038 1025 PVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVK 1101 (1227)
T ss_pred ecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecccc
Confidence 13479999999999999987 67799999999999887 7999999999999999999999995 58
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+.++|.|+|||.-. +++.||++.|+|+.|..+..++...+|.++. .+ ...|.++....|
T Consensus 1102 D~~~i~v~Dwd~~~--------knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~ 1160 (1227)
T COG5038 1102 DVLTINVNDWDSGE--------KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNF 1160 (1227)
T ss_pred ceEEEEEeecccCC--------CccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceec
Confidence 89999999999754 8999999999999999999888888886533 11 234666654444
No 6
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.92 E-value=1.2e-25 Score=248.48 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=185.1
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCEE--EeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA--LRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (763)
|....++|++++|.+|.+.|.+|++||||++.+|++. -++..+.+ |+||+|++.|++....+....+.++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 4555799999999999999999999999999999876 44555666 99999999999999999999999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEccccccccccc---------ccCCc-----eeceEEEEEEEccC----
Q 004297 275 NKDEVLGKCMIPLQY-VDKRLDHKPVNTRWYNLEKHIVVEGEK---------KKDTK-----FASRIHMRICLEGG---- 335 (763)
Q Consensus 275 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~~~~~---------~~~~~-----~~G~l~l~l~~~~~---- 335 (763)
+.|+.||+..++|.+ ...+.+.++...+-|...+.....+.. .+... +.+.. ..+.+.|.
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~ 767 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIY 767 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhh
Confidence 999999999999986 333333444444444433322110000 00000 00000 01111110
Q ss_pred ---------------------------ccccCCCcc----cCCC---CCcchhhh------------------ccCCcce
Q 004297 336 ---------------------------YHVLDESTH----YSSD---LRPTAKQL------------------WKSSIGV 363 (763)
Q Consensus 336 ---------------------------~~~~~~~~~----~~~d---~~~~~~~~------------------~~~~~g~ 363 (763)
.+...+... .+.+ .....-+. ..+....
T Consensus 768 d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~ 847 (1105)
T KOG1326|consen 768 DEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYE 847 (1105)
T ss_pred cccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhee
Confidence 000000000 0000 00000011 1244568
Q ss_pred EEEEEEEccCCCCCccC-CCCCCCCcEEEEEEC-C--EEEeeeeecCCC----CCccccEEEEEee--------------
Q 004297 364 LELGILNAQGLMPMKTK-DGRGTTDAYCVAKYG-Q--KWVRTRTIIDSP----TPKWNEQYTWEVF-------------- 421 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~-~~~g~~Dpyv~v~~~-~--~~~~T~~~~~t~----~P~wne~~~~~v~-------------- 421 (763)
++|.|-.-.+....+.. -+...+|.||+-.+- . ++++|.+.++++ |-+|.-.|.|.-.
T Consensus 848 lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ 927 (1105)
T KOG1326|consen 848 LRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYS 927 (1105)
T ss_pred EEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhc
Confidence 88888887777664331 123459999999663 3 358888888765 6667544444211
Q ss_pred ---C-----CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc----------------------CCCeEeeeE
Q 004297 422 ---D-----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE----------------------TDRVYTHSY 471 (763)
Q Consensus 422 ---~-----~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~----------------------~~~~~~~~~ 471 (763)
+ ....|.|+|||.|.++ +|++||..+++|+++. ..+...+||
T Consensus 928 ws~dete~k~p~rl~iqiWD~d~fs--------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWw 999 (1105)
T KOG1326|consen 928 WSLDETEFKIPARLIIQIWDNDKFS--------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWW 999 (1105)
T ss_pred cccccccccCchheEEEecccCccC--------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccc
Confidence 1 1236999999999998 9999999999999972 234567999
Q ss_pred eeeeeCCCCcccceEEEEEEEE
Q 004297 472 PLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 472 ~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
|+.........-+|++++++.+
T Consensus 1000 P~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1000 PCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eeeecCCCcceecceeeeehhh
Confidence 9988643333358999998876
No 7
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.4e-22 Score=215.18 Aligned_cols=248 Identities=20% Similarity=0.346 Sum_probs=195.1
Q ss_pred EEEEEEEEccccCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCce
Q 004297 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEV 279 (763)
Q Consensus 201 ~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~ 279 (763)
.|.|.|.||+||+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+... -..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 5899999999999999999999999999987 6799999987 99999999999999654 357999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccC
Q 004297 280 LGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKS 359 (763)
Q Consensus 280 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 359 (763)
||.+.|.=.+|.. .+....|+.|..-+ .+.+..|++++.+.+..... +
T Consensus 83 IGKvai~re~l~~----~~~~d~W~~L~~VD-------~dsEVQG~v~l~l~~~e~~~-------------~-------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHM----YPGKDTWFSLQPVD-------PDSEVQGKVHLELALTEAIQ-------------S-------- 130 (800)
T ss_pred cceeeeeHHHHhh----CCCCccceeccccC-------CChhhceeEEEEEEeccccC-------------C--------
Confidence 9999998887764 34688999998863 44578999999998744311 0
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE----EeeeeecCCCCCccccEEEEEeeCC------------
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRTRTIIDSPTPKWNEQYTWEVFDP------------ 423 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~----~~T~~~~~t~~P~wne~~~~~v~~~------------ 423 (763)
.-+...++.++.+.|. .+|.+||||++...+.+ .+|.++++|.+|.|+|.|.|.+...
T Consensus 131 --~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 --SGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred --CcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcc
Confidence 1222244446666553 23569999999887655 4999999999999999999988633
Q ss_pred ----CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc----cceEEEEEEEEee
Q 004297 424 ----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK----KMGEIHLAVRFTC 495 (763)
Q Consensus 424 ----~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l~~~~~~ 495 (763)
...|.+.+||+.... ..++|+|.+++++..+........||-|.....+... .-|.+++.+.++.
T Consensus 205 ~e~~~l~irv~lW~~~~~~-------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLV-------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cCCceeeEEEeeccchhhh-------hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 346889999955432 1689999999999998866677899999865322111 2478888888765
Q ss_pred c
Q 004297 496 S 496 (763)
Q Consensus 496 ~ 496 (763)
.
T Consensus 278 D 278 (800)
T KOG2059|consen 278 D 278 (800)
T ss_pred c
Confidence 4
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=3.3e-22 Score=179.68 Aligned_cols=125 Identities=70% Similarity=1.178 Sum_probs=106.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
.|+|+|++|+||+.+...|..|++||||++++|++++||+++.+++||+|||+|.|.+.++...|+|+|||++..+ . +
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~-~-~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH-W-K 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc-c-c
Confidence 4889999999933222337789999999999999999999999999999999999999988889999999998752 0 0
Q ss_pred CCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
....+|++||++.|+|+++..+....+||+|...++++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 01126899999999999999999999999999887777778899986
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=1.4e-21 Score=182.40 Aligned_cols=149 Identities=69% Similarity=1.135 Sum_probs=127.9
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeE
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLG 281 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~iG 281 (763)
|+|+|++|++|+..+.+|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 78999999999999999999999999999999999998654699999999999998777789999999999888999999
Q ss_pred EEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCc
Q 004297 282 KCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351 (763)
Q Consensus 282 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~ 351 (763)
++.++|+++....+......+||+|......+. .++..+.+|+|++++++.+.+++.+++.++++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 999999998654333455789999998632111 223456789999999999999999999999998765
No 10
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.2e-21 Score=174.91 Aligned_cols=118 Identities=23% Similarity=0.380 Sum_probs=103.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
|.|+|+|++|++|+.. + .|++||||++.+|++++||+++.+ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999998754 3 589999999999999999999876 79999999999999876778999999999986
Q ss_pred CCCCCCCCCccEEEEEecc-cccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 441 DKAGGARDSRIGKVRIRLS-TLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||.+.|++. .+..|+....||+|... +|.++.|+|+|.++|
T Consensus 76 ------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 58888888999999753 344567999998864
No 11
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-21 Score=207.57 Aligned_cols=250 Identities=22% Similarity=0.325 Sum_probs=195.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
..|.|+|.+|+||++.+..|.+||||.|.++. ...+|.++.+++.|.|.|.|+|.+.. .-..|.|-|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEecccccccccc
Confidence 36899999999999999999999999999998 57899999999999999999999875 35779999999993399999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEEEcccCCCCCCccccccccccccccccccccccccc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYL 195 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (763)
|.+.|.=++|.... ....||.|..-. ..+++|+|++++.+.....+
T Consensus 84 GKvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------------------------- 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------------------------- 130 (800)
T ss_pred ceeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccCC----------------------------
Confidence 99999988888663 367899999876 34689999999876532110
Q ss_pred cCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCE----EEeeecccCCCCCccccceEEEEeeCC------------
Q 004297 196 SPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ----ALRTRVSASRTINPMWNEDLMFVAAEP------------ 259 (763)
Q Consensus 196 ~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~----~~kT~~~~~~t~nP~wne~f~f~~~~~------------ 259 (763)
.-+...+++++++.+... +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ----CcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcc
Confidence 024455566666666543 45999999998763 358999887 99999999999988654
Q ss_pred ---CCCeEEEEEEE-ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEc
Q 004297 260 ---FEEHLILTVED-RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333 (763)
Q Consensus 260 ---~~~~L~i~V~d-~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~ 333 (763)
....|++.+|+ .+....++|+|++.+++..+.. ......||-|...+ .+++...+.--|.+.+.+++.
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~--~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP--NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC--CcccCCCCCCccceeeeEEee
Confidence 23367888888 4555679999999999987752 23478899998863 233333445567788887763
No 12
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1e-20 Score=172.70 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=101.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC------CCcEEEEEEEeCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD------PCTVITIGVFDNCHL 437 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~------~~~~l~i~V~d~~~~ 437 (763)
++|+|++|+||+++ +..|.+||||++.++++.++|+++++++||+|||.|.|.+.+ ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999987 566899999999999999999999999999999999999976 367899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEeccccc--CCCeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLE--TDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~--------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G--------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C--------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 6 7899999999999987 66777899999764433334579999876
No 13
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=2.5e-20 Score=166.50 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCC-CCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|.|+|++|++++..+ .|.+||||++++++++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 68999999999988777 789999999999999999999865 89999999999999753 46799999999998 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 116 MGRVLFDLN-EIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 116 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
||++.+++. .+..+ ....+||+|....+....|+|+|++.|
T Consensus 80 iG~~~i~l~~~~~~g-----~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-----ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-----CCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 45544 236899999987777678999999865
No 14
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=1.8e-20 Score=168.94 Aligned_cols=121 Identities=74% Similarity=1.243 Sum_probs=108.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (763)
+|.|+|++|++|+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999877 6899999999999999999999999999999999987766789999999999878999999
Q ss_pred EEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+.++++++..+...+.....+||+|.+..+.+..|+|.+++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999998765444556789999998877678899999999973
No 15
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.84 E-value=1.2e-20 Score=204.95 Aligned_cols=164 Identities=22% Similarity=0.370 Sum_probs=147.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhcccCCchhhHHHHHHHHHHHHcCch--hHHHHHHHHHHHHhhcccc-CCCCCCCCC
Q 004297 558 GSHMWSMRRILSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPEL--ILPTVFLYLFLIGVWYYRW-RPRHPPHMD 634 (763)
Q Consensus 558 ~~n~~r~~~~~~~~~~~~~~l~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~~p~~~l~~~~~~~~~y~~-~~~~~~~~~ 634 (763)
++|+..||+++.|+..++.+++++.+||+|.+|+.+++++.+++|..|+ ++|.+|++++++|+|.... +.
T Consensus 486 ~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~------- 558 (683)
T PF04842_consen 486 DTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRL------- 558 (683)
T ss_pred ccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------
Confidence 6999999999999999999999999999999999999999999999998 6999999999999986554 22
Q ss_pred CCcCCCCCCCCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH
Q 004297 635 TRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIA 714 (763)
Q Consensus 635 ~~~s~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~ 714 (763)
+..-++... +.+|+.+..|++.++|+.+.++++.|+.++.++.|+|+++.|..|++|..++++++++
T Consensus 559 -----------g~~~~~v~V--~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~ 625 (683)
T PF04842_consen 559 -----------GKSFGEVTV--RDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGL 625 (683)
T ss_pred -----------CCccceEEe--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 122233333 4567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhh-hccCCCcC
Q 004297 715 AIVLYVTPFQVVALLTGFY-VLRHPRFR 741 (763)
Q Consensus 715 ~~~l~~vP~r~i~l~~g~~-~~~~p~~r 741 (763)
|+++.++|+||++++..++ |+|+..+|
T Consensus 626 A~~LavvP~kyil~~v~l~~FTre~~~R 653 (683)
T PF04842_consen 626 AAVLAVVPFKYILLFVFLEVFTRESPFR 653 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999998888 89988888
No 16
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.84 E-value=7.3e-21 Score=172.23 Aligned_cols=118 Identities=27% Similarity=0.480 Sum_probs=100.3
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
..|.|+|.|++|.||... |..++|||||++++|+++.||+++++++||+|||.|+|.+.|++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 459999999999999876 6668999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 492 (763)
.||+||.++|+|..+.... ..+| |....+.|... |+|.++.+
T Consensus 80 -------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 80 -------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred -------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEeccc
Confidence 8999999999999987765 3444 54444444433 66655443
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=8.2e-20 Score=165.46 Aligned_cols=120 Identities=28% Similarity=0.388 Sum_probs=106.0
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
.|+|+|++|+||++. +..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999987 5568999999999987 578999999999999999999999887889999999999876
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.+++.++..+.....|++|.+.. +.+..|+|++.++|+|
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 7899999999999999888889999997533 2346799999998853
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.82 E-value=2.1e-19 Score=169.63 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=107.6
Q ss_pred ceEEEEEEEccCCCCCccC---------------------------CCCCCCCcEEEEEECCEE-EeeeeecCCCCCccc
Q 004297 362 GVLELGILNAQGLMPMKTK---------------------------DGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWN 413 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~---------------------------~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wn 413 (763)
|.|.|+|++|++|++||.. ...|++||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998621 246789999999999865 699999999999999
Q ss_pred cEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 414 EQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 414 e~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
|.|.|.+.++.+.|.|.|||++..+ +++||++.|+++++..+.....||+|.+...++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~---------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG---------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC---------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999888889999999998763 5799999999999998888899999987655555557899999988
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.82 E-value=2.8e-19 Score=161.20 Aligned_cols=119 Identities=28% Similarity=0.420 Sum_probs=102.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|.|.|++|+||++++. ..|.+||||++.++++ .++|+++++|+||.|||.|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6789999999998632 2578999999999876 58999999999999999999999876789999999999876
Q ss_pred CCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.++++++..+.....||+|......+. ..|+|+|+++|
T Consensus 76 ----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 88999999999999988888899999986544343 46999998764
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=2.8e-19 Score=163.16 Aligned_cols=117 Identities=30% Similarity=0.550 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecC-----CCCceEEEEEEeCCCC-CC
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR-----IQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-----~~~~~l~i~V~d~~~~-~d 113 (763)
++|+|++|+||+..+..|.+||||++++++++++|++++++.||+|||+|.|.+.. +....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999988999999999999999999999999999999999999865 3567899999999988 79
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--ccceEEEEEE
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAV 159 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~ 159 (763)
++||++.++|.++.... .....+||+|....+. +..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999987322 1235799999875542 4679999876
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2.5e-19 Score=167.26 Aligned_cols=122 Identities=24% Similarity=0.373 Sum_probs=103.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGG 440 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~ 440 (763)
.|+|+|++|+||+++ +..|.+||||++.++++.++|+++.+ ++||+|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 378999999999987 55689999999999999999999977 69999999999999876 458999999998765
Q ss_pred CCCCCCCCCccEEEEEecccccCC----CeEeeeEeeeeeCC-----CCcccceEEEEEEEEee
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETD----RVYTHSYPLLVLYP-----NGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|+++..+ ....+||+|..... +..+.+|+|+|.+.|..
T Consensus 76 ------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 ------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred ------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998643 45689999976532 22345799999999853
No 22
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=8.2e-19 Score=161.28 Aligned_cols=119 Identities=28% Similarity=0.470 Sum_probs=102.3
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~ 436 (763)
....|.|+|+|++|+||+++ +..|.+||||++.+++..++|+++++++||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46679999999999999987 5668999999999999999999999999999999999999875 5689999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccC-----CCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.+ +|++||++.+++.++.. ......|.++. + +..|+|+|++.|
T Consensus 88 ~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS--------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC--------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 76 78999999999999875 33445666652 2 346999998876
No 23
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=5.2e-19 Score=159.61 Aligned_cols=116 Identities=26% Similarity=0.493 Sum_probs=100.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~ 439 (763)
|.|+|+|++|+||++. +..|++||||++.+++...+|+++.+ ++||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 55689999999999999999999865 79999999999999874 67899999998764
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.|++||++.+++.++..+....+||+|.. +| +..|+|+|++.|
T Consensus 76 -------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -------KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -------CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 47899999999999877766789999964 23 356999998865
No 24
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=1.7e-18 Score=157.52 Aligned_cols=119 Identities=25% Similarity=0.473 Sum_probs=101.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCC-cEEEEEEEeCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCHLHG 439 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~V~d~~~~~~ 439 (763)
..|+|.|++|+||++. +.+||||++.+++.. .+|++ .++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4799999999999863 478999999998854 68887 46899999999999876553 58999999998876
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|.++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 -------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998765434456799999999864
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.79 E-value=1.6e-18 Score=155.95 Aligned_cols=113 Identities=25% Similarity=0.469 Sum_probs=101.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
+++|.|++|+||+++ +..|.+||||++.+++..++|+++.+++||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 478999999999987 5568899999999999999999999999999999999999876 789999999999875
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.++|.++..+.....||+|.. ..|+|++.+.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 -----KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred -----CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 78999999999999998888999999953 14999988766
No 26
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=2.2e-18 Score=156.12 Aligned_cols=118 Identities=29% Similarity=0.485 Sum_probs=105.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
+|+|+|++|++|+..+..+.+||||++++++ ..++|+++.++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999889999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
|.+.++++++..+.+ ...|++|.+..+.+..|+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999986643 56799998876656789999998875
No 27
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.5e-18 Score=156.01 Aligned_cols=112 Identities=31% Similarity=0.413 Sum_probs=97.4
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-----
Q 004297 40 LYVRVVKAKD---LPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV----- 111 (763)
Q Consensus 40 L~v~v~~a~~---L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~----- 111 (763)
|+|+|++|++ |..+|..|.+||||++++++++.||++++++.||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 8999999999 88899999999999999999999999999999999999999999764 45899999999875
Q ss_pred --CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEE
Q 004297 112 --KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELML 157 (763)
Q Consensus 112 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l 157 (763)
+|++||++.++++.+..+. ....||+|.+.+ +.+..|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998653 357899999765 2234577754
No 28
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.8e-18 Score=157.98 Aligned_cols=120 Identities=38% Similarity=0.502 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCC---CceEEEEEEeCCCC--CC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ---SSVLEVTVKDKDFV--KD 113 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~d~~~~--~d 113 (763)
.|+|+|++|++|+..+..+.+||||++.+++++++|+++.++.||.|||+|.|.+.+.. ...|.|+|||.+.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999988899999999999999999999999999999999999986432 46899999999876 79
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEEEc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMG 162 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~ 162 (763)
++||++.+++.++... .....+||+|..+. ..+.+|+|.+++++.
T Consensus 81 ~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999999832 23467999999764 234789999999874
No 29
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=2.2e-18 Score=155.89 Aligned_cols=118 Identities=26% Similarity=0.462 Sum_probs=103.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
|.|+|+|++|+||+.+ +..+.+||||++.+++..++|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987 5567899999999999999999999999999999999999877789999999998765
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
++++||++.+++.++..+. .+||+|......+ +..|+|.++++|
T Consensus 75 -----~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 -----KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred -----CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998776 6899997543333 346999999876
No 30
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=6.2e-19 Score=159.78 Aligned_cols=95 Identities=40% Similarity=0.591 Sum_probs=89.5
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
+...|.|+|+|++|.+|..+|..+++||||++.+++++.||+++++++||+|||.|.|.+.++ ...|.++|||+|.+ +
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 346789999999999999999889999999999999999999999999999999999999985 68899999999999 9
Q ss_pred CeeeEEEEEEccccCCC
Q 004297 113 DDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~ 129 (763)
||+||.|+|+|..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 99999999999999865
No 31
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.8e-18 Score=157.97 Aligned_cols=121 Identities=32% Similarity=0.484 Sum_probs=102.1
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC----CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V~d~~~~~ 438 (763)
.|.|+|++|+||++. +..|.+||||++.++++.+||+++.++.||+|||.|.|.+.++ ...|.|.|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 478999999999987 5568899999999999999999999999999999999999864 357999999988752
Q ss_pred CCCCCCCCCCCccEEEEEeccccc-CCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
++|++||++.++++++. .+.....||+|......+ +.+|+|+|++.++
T Consensus 78 -------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 78 -------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred -------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 15789999999999997 566778999997643333 3579999988764
No 32
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.78 E-value=3e-18 Score=157.59 Aligned_cols=124 Identities=30% Similarity=0.519 Sum_probs=105.2
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
...+|.|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||.|||+|.|.+.++....|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 356789999999999999999899999999999999999999999999999999999999877678899999999987 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
|++||++.+++.++............+|..+.. ...|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999998633222233445666642 235999999876
No 33
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=2.6e-18 Score=156.68 Aligned_cols=120 Identities=20% Similarity=0.353 Sum_probs=102.2
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
|.|+|++|+||+. ..|.+||||++.+++ +.++|+++.+++||+|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5689999999985 347899999999974 578999999999999999999998766788999999999875
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+|++||++.+++.++..+.....||+|......+.+..|+|++++.|...
T Consensus 73 -----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 -----DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred -----CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 78999999999999988777789999975433334457999999998643
No 34
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=2.3e-18 Score=155.40 Aligned_cols=117 Identities=29% Similarity=0.451 Sum_probs=101.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|.|+|+|++|++|+..+..+.+||||++++++++.+|+++. ++.||.|||+|.|.+.....+.|.|+|||++..++++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 57999999999999999889999999999999999999885 57899999999999976556889999999987778999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
|++.+++.++..+. ...+|++|.... +..|+|.+++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEeeEEEEEEEC
Confidence 99999999987643 257899998643 457999998864
No 35
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=2.9e-18 Score=157.27 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=102.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~~~~ 440 (763)
|.|+|.|++|+||++.+. ++.+.+||||++.+++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 689999999999998632 116889999999999999999999999999999999999997 4789999999999875
Q ss_pred CCCCCCCCCccEEEEEeccccc---CCCeEeeeEeeeeeCCC-CcccceEEEEEEEE
Q 004297 441 DKAGGARDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLYPN-GVKKMGEIHLAVRF 493 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~~ 493 (763)
+|++||++.|++.++. .......||+|...... .....|+|+|++.+
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999986 33446899999765322 12357999997753
No 36
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=2.6e-18 Score=155.20 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=89.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~ 432 (763)
+.|.|.|++|+||+++ + .|.+||||++.+.+ ...||++++++.||+|||.|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 7899999999999987 5 58999999999853 46899999999999999999999732 3578999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
|++..+ ++++||++.|+|+++..+.....||+|
T Consensus 89 d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV--------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc--------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 789999999999999988878999997
No 37
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=5.1e-18 Score=156.18 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=90.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE-eCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF-DNC 435 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~-d~~ 435 (763)
|.|.|.|++|+||++.+ +..|.+||||++.+ ++ .+.||+++++++||+|||.|.|.+......|.|.|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998753 23578999999988 33 268999999999999999999999866789999999 566
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
.++ ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~--------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD--------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC--------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 654 78899999999999988877899999965
No 38
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=3.1e-18 Score=154.64 Aligned_cols=109 Identities=31% Similarity=0.539 Sum_probs=94.5
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe---cCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK---DRI 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v---~~~ 96 (763)
..+++.|+ .+.|.|+|++|++|+..+ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .++
T Consensus 4 l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 4 VKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred EEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 46667777 468999999999999999 89999999999974 468999999999999999999986 344
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
....|.|+|||++.. ++++||++.++|.++.... ....||+|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 578899999999988 8999999999999998653 25789987
No 39
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=4.6e-18 Score=154.23 Aligned_cols=105 Identities=16% Similarity=0.267 Sum_probs=90.5
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
..|.|.|.|++|+||++.+ ...|.+||||++.+. ....||+++++++||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3489999999999998763 225789999999883 235799999999999999999999875 356899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||++..+ ++++||.+.|+|.++......+.||||.
T Consensus 91 ~d~~~~~--------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFG--------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCC--------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999876 8899999999999999888899999983
No 40
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=4.5e-18 Score=149.06 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=85.8
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
+..|.|.|+|++|+||+ . + |.+||||++.+.. .+.+|+++++|+||+|||.|.|.|.. +...|.|.|
T Consensus 11 ~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 11 KQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred CcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 44589999999999998 2 2 4599999998853 46899999999999999999999874 467899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
||+|+++ ++++||++.+++.++.-+....+|..|
T Consensus 85 ~d~Drfs--------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS--------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC--------CCceEEEEEEccccccCCccccchhcC
Confidence 9999987 899999999999987555555677654
No 41
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=3.2e-18 Score=155.51 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=89.4
Q ss_pred cceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~-~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
.+.|.|+|++|+||+++ +. .|.+||||++.+. ....||+++++++||+|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 37999999999999987 54 3789999999883 234799999999999999999999874 256899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||++.++ ++++||.+.|+|.++..+.....||+|.
T Consensus 91 ~d~~~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG--------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC--------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999876 8899999999999998777778999983
No 42
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=3.1e-18 Score=150.05 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=90.3
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeeCCCCCCeeccEEEEEec--CCCCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~ 99 (763)
++...+.|....+.|+|+|++|++|+ . .|.+||||++++.+ .+++|++.++|+||+|||+|.|.+. ++...
T Consensus 2 ~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 2 KLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred eEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 34455555567789999999999998 3 36699999999974 4778999999999999999999984 45678
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|.|.|||+|++ ++++||++.+++.++..... ..+|-.|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~-----~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLG-----AAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCcc-----ccchhcC
Confidence 899999999999 99999999999998754432 4467543
No 43
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.77 E-value=4.8e-18 Score=154.45 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=100.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
+|+|+|++|+||+++ +..+.+||||++.+++..++|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 488999999999987 5567899999999999999999999999999999999999875 578999999998876
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCC---CcccceEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN---GVKKMGEIHLAV 491 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~ 491 (763)
++++||++.++|.++..+.....||.|...... ..+..|.|++.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 -----KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -----CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999877667899999754322 123468888865
No 44
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=5.2e-18 Score=153.92 Aligned_cols=117 Identities=28% Similarity=0.508 Sum_probs=100.6
Q ss_pred ceEEEEEEEccCCCCCccCC---CCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKD---GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHL 437 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~---~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~ 437 (763)
|.|+|.|++|+||+.++... ..|.+||||++.+++..++|++++++.||.|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999864311 14689999999999999999999999999999999999986 478999999999864
Q ss_pred CCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.+++.++..+.....||+|.+ ...|+|+++++|
T Consensus 81 ---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~~~~~~~~ 121 (121)
T cd08391 81 ---------KDDFLGRLSIDLGSVEKKGFIDEWLPLED------VKSGRLHLKLEW 121 (121)
T ss_pred ---------CCCcEEEEEEEHHHhcccCccceEEECcC------CCCceEEEEEeC
Confidence 57899999999999988877899999964 246999998764
No 45
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=6e-18 Score=149.60 Aligned_cols=102 Identities=29% Similarity=0.430 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|+.|.|+|++|++|...+ ..||||++++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++..+|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997544 5699999999999999999987 59999999999998754 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
|++.|+|.++..+. .++.++||+|.+.
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4567899999964
No 46
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.76 E-value=8.9e-18 Score=151.80 Aligned_cols=117 Identities=29% Similarity=0.455 Sum_probs=99.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|.|.|++|+||+++ +..|.+||||++.++++. .||+++.+++||.|||.|.|.+.+....|.|+|||++..+
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 556899999999998764 7999999999999999999999877789999999999876
Q ss_pred CCCCCCCccEEEEEecccccCC-CeEeeeEeeeeeCCCCcccceEEEEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 492 (763)
+|++||++.+++.++..+ .....|++|......+. ..|+|++.++
T Consensus 75 ----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 ----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred ----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999988754 34689999976543333 4699998764
No 47
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=7.5e-18 Score=155.52 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=100.6
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-------EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNC 435 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~ 435 (763)
.|+|+|++|+||+.. +..|.+||||++.+++. .++|+++.+++||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999976 55688999999998654 57999999999999999999998776778999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCe------EeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV------YTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
..+ +|++||++.+++.++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT--------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC--------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 876 78999999999999876543 35899998644334 346999999887
No 48
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.76 E-value=1.5e-17 Score=149.54 Aligned_cols=113 Identities=36% Similarity=0.588 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
.|+|+|++|++|+..+..+.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999998889999999999999999999999999999999999999776678999999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
++.+++.++..+. ....|++|.+. .|+|++.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC-----CcEEEEEEEe
Confidence 9999999988653 36789999864 3888887755
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=2.4e-17 Score=150.10 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=100.6
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
.+.++|+|++|+||... +..|.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 36899999999999876 567899999999999999999999999999999999999988888999999998875
Q ss_pred CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeC-CCCcccceEEEEEEEEe
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY-PNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~~~ 494 (763)
+|++||++.+++.++..+. .+||+|.... ....+..|+|.+++...
T Consensus 76 ------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 5789999999999865443 5789996322 12223569999887653
No 50
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.5e-17 Score=152.43 Aligned_cols=121 Identities=30% Similarity=0.456 Sum_probs=104.8
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004297 38 QYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~--~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (763)
|.|+|+|++|++|+..+. .+.+||||++.+++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999887 88999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC---CccceEEEEEEE
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVW 160 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~ 160 (763)
+||++.+++.++..... .....+||+|.+... ....|+|++++.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999875311 223579999997742 236899999874
No 51
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.2e-17 Score=150.71 Aligned_cols=112 Identities=23% Similarity=0.341 Sum_probs=96.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~ 439 (763)
|.|+|++|+||++. +..|.+||||++.++ +..+||+++.++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 78999999999976 556899999999985 3568999999999999999999998864 56799999999875
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.++++++..+.....||+|.. +..|++++++.+
T Consensus 77 -------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 77 -------MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred -------CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 57899999999999999999999999953 235888887765
No 52
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=9.7e-18 Score=151.19 Aligned_cols=113 Identities=25% Similarity=0.339 Sum_probs=96.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
.|.|.|++|+||+++ .+||||++.++++..+|+++++++||+|||.|.|.+.++ ...|.++|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~-------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~---- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN-------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA---- 69 (121)
T ss_pred CEEEEEEEecCCCcc-------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC----
Confidence 378999999999863 689999999999999999999999999999999998874 67899999999865
Q ss_pred CCCCCCCCccEEEEEecccccCCC-----eEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDR-----VYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
++++||++.++|+++..+. ...+||+|..... .+..|+|+|.+.|
T Consensus 70 -----~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 70 -----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred -----cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEe
Confidence 5789999999999986532 3568999976443 3456999999987
No 53
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=1.5e-17 Score=151.38 Aligned_cols=116 Identities=20% Similarity=0.394 Sum_probs=100.1
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CEEE
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWV 399 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~~~ 399 (763)
.|+|++++.+. +..|.|.|+|++|+||+++ +..|.+||||++.++ ....
T Consensus 2 ~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~ 53 (124)
T cd08387 2 RGELHFSLEYD-------------------------KDMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTK 53 (124)
T ss_pred CCEEEEEEEEC-------------------------CCCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcE
Confidence 58888888763 3348999999999999987 556889999999883 3468
Q ss_pred eeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 400 RTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 400 ~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
+|++++++.||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+...+.||+|+
T Consensus 54 kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~--------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 54 QSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS--------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC--------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999998753 568999999998876 7899999999999998777889999984
No 54
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=2.4e-17 Score=151.75 Aligned_cols=115 Identities=26% Similarity=0.289 Sum_probs=96.5
Q ss_pred cCceeeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC
Q 004297 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI 96 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~ 96 (763)
|...+++.|+ .+.|.|+|++|+||+..+ ..|.+||||++++.+ .+.||++++++.||+|||+|.|.+. +
T Consensus 18 G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l 92 (146)
T cd04028 18 GDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-P 92 (146)
T ss_pred ceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-C
Confidence 3446666663 479999999999998864 568899999999954 2679999999999999999999998 5
Q ss_pred CCceEEEEEE-eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 97 QSSVLEVTVK-DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 97 ~~~~l~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
....|.|+|| |.+.. ++++||++.|+|.++..+. ....||+|.+..
T Consensus 93 ~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 93 TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 7889999999 56766 8999999999999986543 257899999764
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.7e-17 Score=150.78 Aligned_cols=116 Identities=22% Similarity=0.375 Sum_probs=97.0
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--C
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--I 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 96 (763)
.++++.|+. ..+.|.|+|++|+||+..+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+.. +
T Consensus 4 i~~sl~Y~~--~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l 81 (128)
T cd08392 4 IEFALHYNF--RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL 81 (128)
T ss_pred EEEEEEEeC--CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence 466666775 446999999999999998875 8999999999964 36799999999999999999999843 3
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
....|.|.|||.+.. ++++||++.|+|.++..... .....+||+|.
T Consensus 82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred CCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 467899999999988 89999999999999976532 23467999973
No 56
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=1.5e-17 Score=151.12 Aligned_cols=113 Identities=27% Similarity=0.487 Sum_probs=95.2
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~ 96 (763)
..+++.|+ ...+.|.|+|++|+||++.+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sl~y~--~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l 81 (125)
T cd08393 4 VQFALDYD--PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL 81 (125)
T ss_pred EEEEEEEE--CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh
Confidence 35555665 4567999999999999999875 8999999999953 3578999999999999999999985 34
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
....|.|+|||.+.. ++++||++.++|.++.... ....||+|.
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 567899999999988 8999999999999997552 256899874
No 57
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=5.6e-17 Score=146.62 Aligned_cols=116 Identities=35% Similarity=0.647 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
|.|.|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.+. ...+.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999998889999999999999889999999999999999999998764 57899999999987 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (763)
|++.+++.++..+ ..+|++|.++.+ ....|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998754 358999987653 3468999998765
No 58
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=4.9e-17 Score=150.05 Aligned_cols=122 Identities=32% Similarity=0.534 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
.|+|+|++|++|+..+..+.+||||++++++. +.+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 48999999999999998899999999999764 46899999999999999999998653 56799999999988
Q ss_pred -CCeeeEEEEEEccccCCCCCCC-CCCcCeEEEeecCCC-CccceEEEEEEEE
Q 004297 112 -KDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (763)
++++||++.+++.++....+.+ .....+||+|+...+ .+..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999999764432 345679999997542 2468999999876
No 59
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=5.6e-17 Score=147.41 Aligned_cols=116 Identities=35% Similarity=0.562 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
.|+|+|++|++|...+..+.+||||++++++++.+|++++++.||.|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999998888999999999999999999999999999999999999765567899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCCC-----CccceEEEEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-----DKVRGELMLAV 159 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~~~~G~i~l~~ 159 (763)
.+.+++.++.... ....||.|.+... .+..|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999997643 2467999987432 13568888765
No 60
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=3.4e-17 Score=148.73 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=87.3
Q ss_pred cceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~-~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V 431 (763)
.+.|.|.|++|+||+++ +. .|.+||||++.+.+ .+.||+++++++||+|||.|.|.+... ...|.|.|
T Consensus 14 ~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 37999999999999987 44 48899999998842 367999999999999999999998652 56999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccC---CCeEeeeEee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPL 473 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~---~~~~~~~~~L 473 (763)
||.+.++ ++++||.+.|+|.++.- +....+||+|
T Consensus 91 ~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLK--------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCc--------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998765 78899999999999854 3467899998
No 61
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=2.1e-17 Score=145.52 Aligned_cols=103 Identities=28% Similarity=0.452 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (763)
.|.|+|++|++|+..+..+.+||||++++++++++|++++++.||.|||+|.|.+.++..+.|.|+|||.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 489999999999998888999999999999999999999999999999999999987667889999999987 899999
Q ss_pred EEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
+.++|.++.... .....+||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998653 2346899999864
No 62
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.73 E-value=8.4e-17 Score=146.40 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=98.6
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (763)
+...|+|+|++|+||+.. +.+||||+|.+++. ..+|++ .++.||.|||+|.|.+.......+.|.|||.+.. +|
T Consensus 2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD 77 (126)
T ss_pred ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence 345799999999999874 47899999999884 468887 4689999999999987554446799999999988 89
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEEEEEEcc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAVWMGT 163 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~ 163 (763)
++||.+.++|.++..+. ....||+|.... +....|+|+++++|..
T Consensus 78 ~~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999988653 357899999865 3456799999998863
No 63
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=3.2e-17 Score=148.71 Aligned_cols=112 Identities=22% Similarity=0.313 Sum_probs=94.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
.+++.| .+..+.|.|+|++|+||+..+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+.. +.
T Consensus 5 ~~sl~y--~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~ 82 (125)
T cd04029 5 LFSLSY--DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLE 82 (125)
T ss_pred EEEEEE--ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhC
Confidence 445555 5677899999999999998765 47899999999963 35789999999999999999999853 34
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
...|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 83 ~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 83 TRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 67899999999988 8999999999999998763 267899874
No 64
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=5.1e-17 Score=148.21 Aligned_cols=123 Identities=27% Similarity=0.413 Sum_probs=98.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC--
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG-- 440 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~-- 440 (763)
.|+|+|++|+||+.. |..|.+||||++.+++...+|+++.+++||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999987 566889999999999999999999999999999999999987777899999999852100
Q ss_pred -CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 441 -DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 441 -~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
.+...+.|++||.+.+++.++.... ..||+|.....++ +..|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 0001126899999999999986543 7899997654333 2469998753
No 65
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.73 E-value=6.7e-17 Score=145.71 Aligned_cols=115 Identities=24% Similarity=0.418 Sum_probs=97.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 40 LYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 40 L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
|.|+|.+|+||+..+ ..|.+||||++.++++ ..+|+++++|.||.|||+|.|.+.+. ...|.|.|||++.. ++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999864 4578999999999875 67999999999999999999999753 46899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (763)
|.+.++++++..+. ....||+|+... ..+..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999998643 257899999753 2235799998864
No 66
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=5.8e-17 Score=147.04 Aligned_cols=114 Identities=35% Similarity=0.609 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 38 QYLYVRVVKAKDLPPKDV------TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~------~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
|.|+|+|++|++|+..+. .+.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998764 36899999999999999999999999999999999999766678999999999888
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEE
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 160 (763)
++++||.+.+++.++..+. ...+||+|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC----CCceEEEEEe
Confidence 8999999999999998542 36799999864 2488988764
No 67
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.5e-17 Score=145.82 Aligned_cols=103 Identities=30% Similarity=0.432 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEeC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKDK 108 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d~ 108 (763)
.|+|+|++|++|+..+ .|.+||||+|++.+ ++++|+++.+|.||+|||+|.|.+. .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 59999999999832 3568999999999999999999985 23456799999999
Q ss_pred CCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 109 DFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 109 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
+.. ++++||++.+++.++..+. ....|++|....
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCcc
Confidence 877 7999999999999999664 257899997653
No 68
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.2e-17 Score=145.01 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=86.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
+.|.|.|++|++|..+ +..||||+|++|+++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999643 35699999999999999999988 599999999999988877899999999864
Q ss_pred CCCCCCCCccEEEEEecccccCCCeE--eeeEeeee
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVY--THSYPLLV 475 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~--~~~~~L~~ 475 (763)
.|++||++.|+|.++..+... ..||+|..
T Consensus 71 -----~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 -----WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred -----CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 689999999999999765544 89999964
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=9.7e-17 Score=148.08 Aligned_cols=122 Identities=27% Similarity=0.454 Sum_probs=99.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC---------CCceEEEEEEeC
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---------QSSVLEVTVKDK 108 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------~~~~l~i~V~d~ 108 (763)
++|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||.|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985322 125799999999
Q ss_pred CCC-CCeeeEEEEE-EccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 109 DFV-KDDFMGRVLF-DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 109 ~~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+.. +|++||++.+ ++..+... .......+|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 988 8899999997 34333321 1244578999998543 35799999987753
No 70
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.73 E-value=9.3e-17 Score=151.59 Aligned_cols=119 Identities=27% Similarity=0.458 Sum_probs=101.3
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeeeCCCCCCee
Q 004297 37 MQYLYVRVVKAKDLPPKD------------------------------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEW 85 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~------------------------------~~~~~dPyv~v~~~~~~-~kT~~~~~t~nP~W 85 (763)
.|.|.|+|++|++|+.+| ..|.+||||+|.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999887 34678999999999854 69999999999999
Q ss_pred ccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--ccceEEEEEEEE
Q 004297 86 NQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWM 161 (763)
Q Consensus 86 ne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~ 161 (763)
||+|.|.+... .+.|.|.|||.+..++++||++.++++++..+. ...+|++|.+..++ ...|.|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998654 467999999999888899999999999998653 36799999886544 345899998876
No 71
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.6e-17 Score=145.71 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=86.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-C----C--EEEeeeeecCCCCCccccEEEEEeeCC----CcEEEEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-G----Q--KWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-~----~--~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V 431 (763)
.|+|.|++|+||+.. + .|.+||||+|.+ | . ++++|+++.+++||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 488999999999875 4 389999999997 3 2 357899999999999999999999742 35799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||++..+ +|++||++.++|+++..++....|++|..
T Consensus 77 ~D~d~~~--------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR--------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC--------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 78999999999999999888899999953
No 72
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=4.3e-17 Score=148.58 Aligned_cols=120 Identities=29% Similarity=0.392 Sum_probs=99.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~ 438 (763)
+|.|+|+|++|+||+..+ ...+.+||||++.+++ ..++|+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998642 1346799999999987 789999999999999999999998866889999999998765
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCCeEee-eEeeeeeCCCCcccceEEEEEEEEe
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTH-SYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+|++||++.++|.++..+..... |+++. . +.+..|+|+++++|.
T Consensus 79 --------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~-~~k~~G~i~~~l~~~ 123 (124)
T cd04044 79 --------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---R-NGKPVGELNYDLRFF 123 (124)
T ss_pred --------CCceeEEEEEEHHHhccCccccCcchhhh---c-CCccceEEEEEEEeC
Confidence 78999999999999987765543 44453 2 234569999999984
No 73
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=5.8e-17 Score=146.32 Aligned_cols=113 Identities=32% Similarity=0.523 Sum_probs=98.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|.|+|++|++|+..+..+.+||||++++++ ++.+|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999964 57899999999999999999999876556789999999998889999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
|++.+++.++..+. ....|++|.+.. .|++.+++.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~~----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQG----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCCC----CceEEEEEEe
Confidence 99999999998653 367899998752 4888888754
No 74
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=5.2e-17 Score=147.83 Aligned_cols=114 Identities=26% Similarity=0.506 Sum_probs=96.9
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
++.+...+.++.+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +....
T Consensus 4 ~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~ 83 (124)
T cd08387 4 ELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRT 83 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCE
Confidence 34454455567789999999999999999889999999999953 46899999999999999999999753 33568
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
|.|+|||++.. ++++||++.++++++..+. ....||+|+
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 99999999988 8999999999999998653 357899986
No 75
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=4.9e-17 Score=144.75 Aligned_cols=106 Identities=26% Similarity=0.443 Sum_probs=92.9
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC----CCceEEEEEEeCCC
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI----QSSVLEVTVKDKDF 110 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~~l~i~V~d~~~ 110 (763)
++.+.|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35689999999999998 57899999999999999999999999999999999997432 24689999999998
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
. ++++||++.++|+++..+ +++....+|++|.++
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred cccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 7 899999999999999865 346778999999863
No 76
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=3.4e-17 Score=146.97 Aligned_cols=101 Identities=20% Similarity=0.346 Sum_probs=86.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~ 434 (763)
+.|.|+|++|+||+++ + .|.+||||++.+.+ ...||+++.++.||+|||.|.|.+... ...|.|.|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 7899999999999987 4 57899999998853 357999999999999999999998742 45799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
+..+ ..+++||.+.|+|.++..+....+||.|
T Consensus 88 ~~~~-------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8653 1468999999999999888878999986
No 77
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.72 E-value=4e-17 Score=146.81 Aligned_cols=112 Identities=20% Similarity=0.366 Sum_probs=94.4
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCCCCCCeeccEEEEEec--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 97 (763)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||++++-+ .++||++++++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~--~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYD--SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEEC--CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 3444555 56679999999999999988888999999999854 3678999999999999999999984 456
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
...|.|.|||.+.. ++++||.+.|+|+++....+ ....||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 78999999999988 89999999999999965532 35779875
No 78
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.72 E-value=6.7e-17 Score=147.15 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=90.4
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDN 434 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~ 434 (763)
.+.|.|+|++|+||+++ +..|.+||||++.+.+ ..++|++++++.||+|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 37999999999999987 5568899999998743 468999999999999999999998752 46899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
+.++ +|++||++.++|+++..+....+|++|.
T Consensus 92 d~~~--------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS--------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC--------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9876 7899999999999998888889999984
No 79
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=1e-16 Score=146.13 Aligned_cols=116 Identities=26% Similarity=0.430 Sum_probs=100.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
|.|+|++|++|+. ..|.+||||++++++ ++.+|+++.++.||+|||+|.|.+.. ....|.|+|||.+.. ++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 6799999999987 678999999999974 57899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCC--CccceEEEEEEEEcc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGT 163 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~ 163 (763)
|++.+++.++..... ..+|++|....+ ....|+|.+++.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999986632 468999987643 346899999998864
No 80
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=4.1e-17 Score=143.54 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=83.7
Q ss_pred ceEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDNCHLH 438 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~-~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~~~~~ 438 (763)
|+|.|+|++|+||++.+... .++.+||||++.++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875421 234689999999999999999999999999999999998753 458999999999876
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCC
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
+|++||++.++|++|..+.
T Consensus 81 --------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 --------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997653
No 81
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.5e-16 Score=144.82 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=101.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
...|+|+|++|++|...+..|.+||||++.+++++.+|++++++.||.|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 358999999999999998889999999999999999999999999999999999988754 6789999999988889999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC---CCccceEEEEEEEEc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK---GDKVRGELMLAVWMG 162 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~G~i~l~~~~~ 162 (763)
|++.+++..+... ..+|++|.... .....|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCc-------CceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999875422 45788986432 235679999998664
No 82
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=2.4e-17 Score=146.38 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=89.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCcc-ccEEEEEeeCC---CcEEEEEEEeCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKW-NEQYTWEVFDP---CTVITIGVFDNCHLHG 439 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~w-ne~~~~~v~~~---~~~l~i~V~d~~~~~~ 439 (763)
|.|+|++|+||++++. ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998732 2578999999999999999999999999999 99999999863 468999999999876
Q ss_pred CCCCCCCCCCccEEEEEecccccC---CCeEeeeEeeee
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPLLV 475 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~---~~~~~~~~~L~~ 475 (763)
+|++||++.+++.++.. +....+||+|.+
T Consensus 78 -------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999976 456899999964
No 83
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=4.5e-17 Score=151.00 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=93.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEee---------------C
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---------------D 422 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~---------------~ 422 (763)
.|.|+|++|+||++ ..|.+||||+|.+.+ ...+|+++++++||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 47899999999986 247899999999966 5689999999999999999999995 1
Q ss_pred -CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC-CeEeeeEeeeeeCCCC---------cccceEEEEEE
Q 004297 423 -PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVLYPNG---------VKKMGEIHLAV 491 (763)
Q Consensus 423 -~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~i~l~~ 491 (763)
....|.|.|||++..+ +|++||++.|+|..+..+ .....||+|....... ....|+++|.+
T Consensus 76 ~~~~~L~i~V~d~~~~~--------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG--------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC--------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1357999999998765 789999999999999877 5668999996543222 12357777654
No 84
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=7.9e-17 Score=147.43 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=90.1
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~ 432 (763)
.+.|.|+|++|+||+.+ +..+.+||||++.+. ...++|++++++.||+|||.|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 47999999999999987 556899999999884 3578999999999999999999998642 468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
|++... .++|++||.+.|+|.++..+....+||+|+
T Consensus 92 ~~~~~~------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFL------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCccc------CCCCceEEEEEEecccccccCCccceEECc
Confidence 998641 017899999999999998877789999983
No 85
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.71 E-value=6.7e-17 Score=142.26 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=87.9
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
.|.|+|++|+||++. +..+.+||||+++++++..+|+++.++.||+|||.|.|.+.++ .+.|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLA---KSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCc---ccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC-----
Confidence 378999999999986 5568999999999999999999999999999999999999985 6789999999752
Q ss_pred CCCCCCCCccEEEEEecccccCC--CeEeeeEeeee
Q 004297 442 KAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLV 475 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~~ 475 (763)
+++||++.++|.++..+ .....||+|.+
T Consensus 73 ------~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 ------GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ------CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 67999999999998654 46789999964
No 86
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=1.1e-16 Score=146.19 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=85.7
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V 431 (763)
.+.|.|+|++|+||+.+ +..+.+||||++.+.+ ...+|++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 37999999999999987 5568899999998854 46899999999999999999998654 256899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||++..+ ++++||++.++|.+.... ...+||+|.
T Consensus 92 ~d~~~~~--------~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDG--------ENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EeCCCCC--------CCcEeeEEEEeccccccc-CCcceEECc
Confidence 9998865 789999999999983222 236899983
No 87
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=2.1e-16 Score=142.82 Aligned_cols=116 Identities=32% Similarity=0.518 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
|.|+|++|++|+..+..|.+||||++.+++. ..+|++++++.||.|||.|.|.+.. ....|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999885 4699999999999999999999865 347899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (763)
++.++++++.... ....+|++|.+.. +....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~----~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHP----RGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCC----CCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999998886431 2256899998653 2346799998764
No 88
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.71 E-value=1.8e-16 Score=145.93 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=99.6
Q ss_pred cceEEEEEEEccCCCCCccCC-------CCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~-------~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~ 432 (763)
.|.|+|+|++|+||.+.+... ..|.+||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 389999999999998764310 13689999999999876 69999999999999999999997 4678999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccC--CCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|++..+ +|++||++.++|.++.. +.....|++|. +.|+|++++.+..
T Consensus 82 d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG--------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC--------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999987 56679999994 3599999888753
No 89
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=8.8e-17 Score=149.09 Aligned_cols=102 Identities=28% Similarity=0.482 Sum_probs=87.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec---------------CCCCc
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD---------------RIQSS 99 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~---------------~~~~~ 99 (763)
|.|+|++|++|+. .+|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7999999999988 568999999999987 5679999999999999999999984 22346
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|.|||++.. +|++||++.|++..+.... .....||+|.++.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 799999999988 8999999999999988651 1357899998775
No 90
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.7e-16 Score=144.73 Aligned_cols=103 Identities=26% Similarity=0.360 Sum_probs=89.8
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEe
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFD 433 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d 433 (763)
.+.|.|.|++|+||+.+ +..|.+||||++.+ ++...+|++++++.||.|||.|.|.+.. ....|.++|||
T Consensus 15 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 37899999999999886 55688999999988 3457899999999999999999998542 24579999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
++..+ ++++||++.++++++..+.....|++|.
T Consensus 92 ~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS--------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc--------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99875 7899999999999999888889999984
No 91
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=2.2e-16 Score=143.83 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=86.5
Q ss_pred cceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~-g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V~ 432 (763)
.+.|+|+|++|+||++. +.. |.+||||++.+. .+..||+++++++||+|||.|.|. +.. ....|.++||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 37999999999999987 443 789999999884 346799999999999999999994 331 2457999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCC--CeEeeeEeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLL 474 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~ 474 (763)
|++.++ +|++||++.|+|+++.-+ +....|.+|+
T Consensus 92 d~d~~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS--------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC--------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 998876 899999999999998544 6788999874
No 92
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=1.3e-16 Score=145.27 Aligned_cols=112 Identities=32% Similarity=0.481 Sum_probs=94.9
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
.+++.|+ ...+.|.|+|++|++|+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. .....
T Consensus 6 ~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 6 QFSLDYD--FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEe--CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 4555555 45569999999999999998889999999999964 46789999999999999999999853 34568
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
|.|+|||++.. ++++||++.+++.++..+. ...+|++|.
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 99999999988 8999999999999987643 367999986
No 93
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.70 E-value=1.4e-16 Score=143.32 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=89.5
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--C----CEEEeeeeecCCCCCccccEEEEEeeC---CCcEEE
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--G----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVIT 428 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~ 428 (763)
.+..+.|.|.|++|+||+++ +..|.+||||++.+ + ..+.||+++++++||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 34458999999999999987 55688999999987 2 247899999999999999999999874 367999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC-CeEeeeEee
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L 473 (763)
|.|||++..+ ++++||.+.|+|.++... ....+||+|
T Consensus 87 ~~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ--------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC--------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998765 789999999999999554 457889976
No 94
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.70 E-value=3e-16 Score=143.88 Aligned_cols=123 Identities=23% Similarity=0.435 Sum_probs=102.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
..|.|.|++|+||+++ .||||.+.+++.. .||+++.++.||.|+|.|.|.+..+...++|.||+.+...
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 6899999999999874 3799999999987 5999999999999999999987777788999998765321
Q ss_pred CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCC-------cccceEEEEEEEEeec
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG-------VKKMGEIHLAVRFTCS 496 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~~~~~ 496 (763)
.+..++++||+|.|++.++..+....+||||....... .+..|+|+++++|.+.
T Consensus 81 --~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 --KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred --ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 11226789999999999999999999999998766543 2345799999999764
No 95
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=1.6e-16 Score=145.02 Aligned_cols=112 Identities=38% Similarity=0.600 Sum_probs=92.4
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC---CCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR---IQS 98 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~ 98 (763)
+.+...+.+..+.|.|+|++|++|+..+..+.+||||++++.+ ++++|++++++.||+|||+|.|.+.. +..
T Consensus 5 l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~ 84 (125)
T cd04031 5 IQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKE 84 (125)
T ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCC
Confidence 3444444456679999999999999998889999999999975 57789999999999999999998632 346
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
..|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 85 RTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 7899999999988 899999999999983322 145899985
No 96
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=3.6e-16 Score=144.30 Aligned_cols=118 Identities=19% Similarity=0.357 Sum_probs=96.6
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC----------CcEEEEEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP----------CTVITIGVF 432 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~----------~~~l~i~V~ 432 (763)
.|+|+|++|+||+++ |..|.+||||++.+++...+|+++++++||.|||.|.|.+... ...|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAA---DKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCC---CCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 689999999999987 5668999999999999999999999999999999999975421 257999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEE-eccccc---CCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRI-RLSTLE---TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i-~l~~l~---~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|++..+ +|++||++.+ ++..+. .+....+||+|.. .| ...|+|.+++++..
T Consensus 79 d~d~~~--------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~---~~-~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVG--------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK---GG-QSAGELLAAFELIE 133 (135)
T ss_pred eCcCCC--------CCccceEEEeeeeeecccCCCCCCCceEEEeec---CC-CchhheeEEeEEEE
Confidence 999875 7899999987 444443 3456689999963 23 35699999988753
No 97
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=2e-16 Score=143.96 Aligned_cols=104 Identities=19% Similarity=0.338 Sum_probs=89.0
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V 431 (763)
..+.|.|+|++|+||++++. ..|.+||||++.+.+ ...+|++++++.||+|||.|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 34799999999999998731 457899999998732 358999999999999999999998752 56899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
||++..+ ++++||++.++|.++..+...+.||+|
T Consensus 90 ~d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG--------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc--------CCceeeEEEEecccccccCCCccEEEC
Confidence 9998876 789999999999999777777999987
No 98
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.70 E-value=1.2e-16 Score=143.38 Aligned_cols=110 Identities=25% Similarity=0.451 Sum_probs=90.3
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC-CCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~ 99 (763)
++.+.|++ ..+.|.|+|++|+||+..+ .|.+||||++++.+ .++||++++++.||.|||+|.|.+... ...
T Consensus 2 ~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~ 78 (119)
T cd08685 2 QLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK 78 (119)
T ss_pred EEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCC
Confidence 34455555 4579999999999999988 78999999999975 356899999999999999999998431 235
Q ss_pred eEEEEEEeCCCC--CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 100 VLEVTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 100 ~l~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|.|+|||++.. ++++||.+.|++.++..+. ...+||.|
T Consensus 79 ~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 79 RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred EEEEEEECCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 689999999876 4799999999999997442 35789976
No 99
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=2.1e-16 Score=143.27 Aligned_cols=118 Identities=25% Similarity=0.328 Sum_probs=94.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-CEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|+|+|++|+||+.+ +..|.+||||++.++ .+.+||+++++++||.|||.|.|.+.. ...|.|+|||++..+
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999876 566899999999996 667999999999999999999999976 789999999998764
Q ss_pred CCCCCCCccEEEEEecccccCCC-eEeeeEeeeeeCCCC-cccceEEEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVLYPNG-VKKMGEIHLAV 491 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~~-~~~~~~~L~~~~~~g-~~~~G~i~l~~ 491 (763)
...|++||++.+++.++.... ....||+|....... ....|+|.+++
T Consensus 74 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 --KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred --CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 012689999999999986544 336799996554322 12358887754
No 100
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=3.6e-16 Score=142.91 Aligned_cols=114 Identities=22% Similarity=0.340 Sum_probs=99.0
Q ss_pred EEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCC
Q 004297 368 ILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAG 444 (763)
Q Consensus 368 v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~ 444 (763)
|++|+||+. ..|++||||++.+++..++|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 678999985 357899999999999999999999999999999999999753 678999999998875
Q ss_pred CCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 445 GARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 445 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+|++||++.++++++..+.....|++|.... +....|+|++++.|.++
T Consensus 71 --~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 --RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred --CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 7899999999999999888889999996533 33335999999998664
No 101
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.69 E-value=3.6e-16 Score=142.65 Aligned_cols=113 Identities=35% Similarity=0.614 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-------
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (763)
.|.|+|++|++|+..+..+.+||||++++++++.+|+++.++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999999899999999999999999999998654 56799999999851
Q ss_pred -----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEE
Q 004297 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAV 159 (763)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~ 159 (763)
++++||.+.+++.++... ..+||.|++..+. ..+|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 689999999999987532 5689999976643 5789998863
No 102
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=4.3e-16 Score=142.35 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=100.5
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC--CCceEEEEEEeCCCC-CCeeeEEEE
Q 004297 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDFMGRVL 120 (763)
Q Consensus 44 v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~lG~~~ 120 (763)
|++|++|+. ..+.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 578999999999999999999999999999999999998643 468899999999988 899999999
Q ss_pred EEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 121 FDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 121 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
++++++..+. ....|++|.+..+....|+|+++++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999998653 36789999887766667999999998764
No 103
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.69 E-value=2.7e-16 Score=143.29 Aligned_cols=115 Identities=25% Similarity=0.366 Sum_probs=93.4
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEE-ec--CCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--RIQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~ 97 (763)
.++++.|+. ..+.|.|+|++|+||+..+.. +.+||||++.+.+ ++.||++++++.||.|||+|.|. +. +..
T Consensus 5 l~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~ 82 (128)
T cd08388 5 LFFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ 82 (128)
T ss_pred EEEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence 355666664 557999999999999998875 8999999999964 46799999999999999999994 42 334
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
...|.|+|||++.. ++++||++.++|+++..... .....|.+|+
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 46799999999988 89999999999999976521 2256788775
No 104
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=1.3e-16 Score=141.89 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=85.5
Q ss_pred ceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEe
Q 004297 362 GVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFD 433 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~-g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d 433 (763)
|.|+|+|++|+||+++ +.. |.+||||++.+. ...++|+++++++||+|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 555 789999999883 346899999999999999999998864 35689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
++..+ +|++||++.+++.++.+. .+|+++
T Consensus 78 ~d~~~--------~dd~lG~~~i~l~~l~~~---~~~~~~ 106 (111)
T cd04041 78 SDRFT--------ADDRLGRVEIDLKELIED---RNWMGR 106 (111)
T ss_pred CCCCC--------CCCcceEEEEEHHHHhcC---CCCCcc
Confidence 99876 789999999999999754 578887
No 105
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2.1e-16 Score=146.69 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=88.8
Q ss_pred eEEEEEEEccCCCCCccC-----------CCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEE
Q 004297 363 VLELGILNAQGLMPMKTK-----------DGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITI 429 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~-----------~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i 429 (763)
.|.|+|++|++|++++.. +..+.+||||+|.++++..+|+++++++||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998532 1235799999999999999999999999999999999998754 569999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCe-------EeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRV-------YTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~-------~~~~~~L~~ 475 (763)
+|||+|..+ +|++||++.|+|.++..... -.+|+.|.+
T Consensus 81 ~v~D~d~~~--------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVG--------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCC--------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999876 89999999999999865442 257888865
No 106
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=3.7e-16 Score=142.99 Aligned_cols=112 Identities=31% Similarity=0.525 Sum_probs=94.6
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++..
T Consensus 6 ~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~ 83 (127)
T cd04030 6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR 83 (127)
T ss_pred EEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence 4555555 66789999999999999999889999999999963 5789999999999999999999984 3345
Q ss_pred ceEEEEEEeCCCC---CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 99 SVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 99 ~~l~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
..|.|.|||.+.. ++++||++.+++.++..+. ...+||+|.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 7899999999873 7999999999999987553 357899884
No 107
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=3.1e-16 Score=137.99 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=82.7
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC-CCceEEEEEEeCCCC-
Q 004297 38 QYLYVRVVKAKDLPPKDVT----GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKDFV- 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~----~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~d~~~~- 111 (763)
|.|.|+|++|++|+..+.. +.+||||+++++++++||++++++.||+|||+|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 3589999999999999999999999999999999998543 245799999999988
Q ss_pred CCeeeEEEEEEccccCCCCC
Q 004297 112 KDDFMGRVLFDLNEIPKRVP 131 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~ 131 (763)
+|++||++.++|+++..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987654
No 108
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=2.9e-16 Score=139.76 Aligned_cols=107 Identities=26% Similarity=0.372 Sum_probs=93.2
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeCCC----CCeEEEEEEEcc
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF----EEHLILTVEDRV 272 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~L~i~V~d~d 272 (763)
|+.+.|+|+|++|++|. ++.+||||++++++++++|+++++ +.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46678999999999998 467899999999999999999876 999999999999986543 468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccc
Q 004297 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (763)
Q Consensus 273 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (763)
..+++++||++.++++++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888999999999999999753 455678999999763
No 109
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=6e-16 Score=140.31 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C--Cee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG-NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K--DDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~--d~~ 115 (763)
|+|+|++|++|+..+..+.+||||+++++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578899999999999999999999975 67899999999987 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCC---CccceEEEEEE
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAV 159 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~ 159 (763)
||++.+++.++..... ....|++|..... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975432 2467999977653 34578888764
No 110
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=2.2e-16 Score=143.93 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeC-CCCCCeeccEEEEEecCCC----CceEEEEEEeCCCC-
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFE-KKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV- 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~-~t~nP~Wne~f~f~v~~~~----~~~l~i~V~d~~~~- 111 (763)
+|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+.+.. ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988889999999999998 889999975 5899999999999997653 68899999999986
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEE
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 157 (763)
++++||++.+++.++......+......||+|....| +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 8999999999999999876533345678999998765 45788863
No 111
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=3.1e-16 Score=139.23 Aligned_cols=104 Identities=36% Similarity=0.558 Sum_probs=90.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeeeCCCCCCee-ccEEEEEecCC--CCceEEEEEEeCCCC-CCe
Q 004297 40 LYVRVVKAKDLPPKDV-TGSCDPYVEVKMGNYKGTTRHFEKKTNPEW-NQVFAFSKDRI--QSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~~~~kT~~~~~t~nP~W-ne~f~f~v~~~--~~~~l~i~V~d~~~~-~d~ 114 (763)
|.|+|++|++|+.++. .+.+||||+++++++++||++++++.||.| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 688999999999999999999999999999 99999998542 357899999999988 889
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 1234788999975
No 112
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=4.8e-16 Score=140.91 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCEEEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEEEe
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVFD 433 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V~d 433 (763)
.+.|.|+|++|+||++. +..|.+||||++.+ ..++.||+++++ .||+|||.|.|+ +.. ....|.+.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 37899999999999987 55688999999866 235689999887 999999999998 543 36789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 91 ~~~~~--------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMR--------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcc--------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99876 7899999999999998888889999984
No 113
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=5.5e-16 Score=141.39 Aligned_cols=113 Identities=32% Similarity=0.524 Sum_probs=94.5
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEec---CCCCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD---RIQSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~ 99 (763)
.+++.|+ ...+.|.|+|++|++|+..+..+.+||||++.+. .++.+|++++++.||.|||+|.|.+. .+...
T Consensus 6 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~ 83 (125)
T cd08386 6 QFSVSYD--FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR 83 (125)
T ss_pred EEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence 4555554 5567999999999999999888999999999994 36789999999999999999999742 23456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
.|.|+|||++.. ++++||++.+++.++.... ....|+.|.+
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~~ 125 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLKP 125 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecCC
Confidence 799999999988 8999999999999998643 3678998863
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=3.5e-16 Score=148.17 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=100.8
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCE
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQK 397 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~ 397 (763)
.|+|.+.+++.+...- ..+.. .....|.|.|+|++|+||++. +..|.+||||++.+ +..
T Consensus 1 ~G~l~~~l~y~~~~~~----------~~~~~---~~~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~ 64 (162)
T cd04020 1 RGELKVALKYVPPESE----------GALKS---KKPSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKS 64 (162)
T ss_pred CceEEEEEEecCcccc----------ccccc---cCCCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCc
Confidence 4889999887543210 00000 134569999999999999987 55689999999977 235
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
.+||+++++++||.|||.|.|.+.. ....|.|+|||++.++ +|++||++.+++.++........|+.+
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~--------~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS--------SNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC--------CCceEEEEEEeCCccccCCCccccccC
Confidence 6899999999999999999998643 2458999999999876 799999999999999776666888887
Q ss_pred e
Q 004297 474 L 474 (763)
Q Consensus 474 ~ 474 (763)
.
T Consensus 137 ~ 137 (162)
T cd04020 137 T 137 (162)
T ss_pred C
Confidence 4
No 115
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=4.6e-16 Score=141.00 Aligned_cols=113 Identities=23% Similarity=0.387 Sum_probs=94.3
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEE-ec--CCCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--RIQS 98 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~~ 98 (763)
..+++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ ++++|++.++ .||+|||+|.|+ +. ++..
T Consensus 5 l~~sl~Y~--~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 5 LDVAFEYD--PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred EEEEEEEC--CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence 34555555 55569999999999999999889999999988854 5778998887 999999999998 53 3456
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
..|.|+|||++.. ++++||++.|+|+++.... ....|++|++
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~p 124 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLEP 124 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCCC
Confidence 7899999999988 8999999999999997542 3678999873
No 116
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=5.8e-16 Score=141.65 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~ 430 (763)
+..+.|.|.|++|+||.+++.. ..+.+||||++.+.. .+.||+++++++||+|||.|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 4448999999999999987421 234599999998743 24699999999999999999999885 25689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||+|..+ ++++||++.+++.. .|....+|..+..
T Consensus 91 V~d~d~~~--------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPG--------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCc--------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999876 89999999999986 3444567776644
No 117
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=3.1e-16 Score=139.43 Aligned_cols=100 Identities=31% Similarity=0.473 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCC---CCceEEEEEEeCCC
Q 004297 38 QYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDF 110 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~~l~i~V~d~~~ 110 (763)
|+|+|+|++|++|+..+.. +.+||||++++.+ ...+|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999954 467999999999999999999987543 35689999999999
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
. +|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 8 899999999999999843 46877654
No 118
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.67 E-value=6.5e-16 Score=140.55 Aligned_cols=111 Identities=23% Similarity=0.410 Sum_probs=92.8
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
.+++.| ....+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +.
T Consensus 4 ~~~l~y--~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~ 81 (123)
T cd08521 4 EFSLSY--NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE 81 (123)
T ss_pred EEEEEE--eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC
Confidence 444455 456679999999999999888 678999999999853 46789999999999999999999853 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
...|.|+|||.+.. ++++||++.++|.++..+. ....||+|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 56899999999987 8899999999999997542 25789986
No 119
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=7.8e-16 Score=142.40 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=83.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
.|.|+|.|++|+||+.. +. +.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 38999999999999875 44 7899999999999999999999999999999999999999889999999999876
Q ss_pred CCCCCCCCCccEEEEEecccccC
Q 004297 441 DKAGGARDSRIGKVRIRLSTLET 463 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~ 463 (763)
+|++||++.+++.++..
T Consensus 75 ------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ------CCCEEEEEEEEHHHhhh
Confidence 78999999999999743
No 120
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.66 E-value=9.3e-16 Score=140.52 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=86.0
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C-E--EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q-K--WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~-~--~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~ 430 (763)
+..+.|.|.|++|+||+++ +..|.+||||++.+. + + +.||+++++++||+|||.|.|.+.. ....|.|.
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3347899999999999987 566899999999882 2 2 4689999999999999999999875 36789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ ++++||++.|.... .|....+|..+..
T Consensus 89 V~~~d~~~--------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG--------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC--------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999876 78999999998775 3445578887754
No 121
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.66 E-value=1.6e-15 Score=140.70 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=93.3
Q ss_pred EEEEEEEccC--CCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCCCCCccccEEEEEeeCC---------CcEE
Q 004297 364 LELGILNAQG--LMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP---------CTVI 427 (763)
Q Consensus 364 l~v~v~~a~~--L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~~~v~~~---------~~~l 427 (763)
..++|..|+| |++. +..+.+||||++.+ +.+.+||+++++|+||+|||.|.|.+... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455556666 6655 55688999999986 34679999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCc-ccceEEEEEEEEe
Q 004297 428 TIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV-KKMGEIHLAVRFT 494 (763)
Q Consensus 428 ~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~-~~~G~i~l~~~~~ 494 (763)
.++|||++.+. .+|++||++.++|+.+..+.....|++|.. |. ...|+|+++++..
T Consensus 81 ~~~V~d~~~f~-------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL-------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc-------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEec
Confidence 99999998752 169999999999999987766788999964 22 2468999999874
No 122
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=1.1e-15 Score=139.23 Aligned_cols=120 Identities=26% Similarity=0.339 Sum_probs=98.5
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 37 MQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
+|.|+|+|++|++|+..+ ..+.+||||++++++ ...+|+++.++.||.|||+|.|.+.. ..+.|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 356799999999998 78999999999999999999999874 478899999999988 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|++||.+.+++.++...... ...|..+.. +.+..|+|.+++.|.+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~--~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR--NGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc--CCccceEEEEEEEeCC
Confidence 99999999999999976431 122444442 3345799999998753
No 123
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=2.2e-15 Score=138.61 Aligned_cols=115 Identities=27% Similarity=0.456 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLPPKDVT----------GSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~----------~~~dPyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
|.|+|+|++|++|...+.. +.+||||++.+++++ .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999987752 689999999999864 689999999999999999999974 578999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|++.. +++++|++.++|.++..+. ......|++|+. .|.|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC------CcEEEEEEEEec
Confidence 99887 8899999999999988741 123578999973 389999987753
No 124
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.66 E-value=1.4e-15 Score=138.40 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=89.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEe
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFD 433 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d 433 (763)
..+.|.|.|++|+||++++. ..+.+||||++.+. ....+|+++++++||+|||.|.|.+... ...|.|.|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 34799999999999998731 45789999999873 3467999999999999999999998753 4689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
++..+ ++++||++.++|+++........|++|.
T Consensus 90 ~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRFS--------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcCC--------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 98765 7899999999999998877778999984
No 125
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.66 E-value=1.4e-15 Score=138.99 Aligned_cols=113 Identities=22% Similarity=0.347 Sum_probs=95.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~ 438 (763)
.|+|+|++|+||+.+ +..|.+||||++.+++ ..++|+++.+++||.|||.|.|.+... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKAD---SSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCC---CCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 588999999999987 5568999999998754 368999999999999999999999874 678999999998865
Q ss_pred CCCCCCCCCCCccEEEEEecccccC---CCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
++++||++.++|.++.. +.....|++|.. .|+|++.+.+.
T Consensus 79 --------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~ 121 (126)
T cd04043 79 --------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSME 121 (126)
T ss_pred --------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEe
Confidence 78999999999998632 445678999942 48888887764
No 126
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.66 E-value=7.4e-16 Score=138.79 Aligned_cols=95 Identities=22% Similarity=0.394 Sum_probs=84.1
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNC 435 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~~ 435 (763)
....|.|+|+|++|+||+. +..|.+||||+|.++++.+||+++++++||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3567999999999999974 556889999999999999999999999999999999997543 3779999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCC
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETD 464 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~ 464 (763)
..+ +|++||++.++|....++
T Consensus 100 ~~s--------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW--------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC--------CCCeeEEEEEEecCCcee
Confidence 876 899999999999977654
No 127
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.66 E-value=5.8e-16 Score=141.17 Aligned_cols=113 Identities=26% Similarity=0.315 Sum_probs=95.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeec-CCCCCccccEEEEEeeCC-----CcEEEEEEEeCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTII-DSPTPKWNEQYTWEVFDP-----CTVITIGVFDNC 435 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~-~t~~P~wne~~~~~v~~~-----~~~l~i~V~d~~ 435 (763)
.|+|+|++|+||+.. +..+++||||++.+++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 378999999999976 4568999999999988 889999976 589999999999999876 579999999998
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCe-----EeeeEeeeeeCCCCcccceEEEE
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV-----YTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
.++ +|++||.+.|+|.++..+.. ...||+|.... | +.+|.|++
T Consensus 78 ~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL--------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC--------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 765 78999999999999976543 47899997533 3 34588864
No 128
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.66 E-value=2.5e-15 Score=137.23 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (763)
.|+|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999998889999999999875 357999999999999999999999765567899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
+||++.++|.++.... +......|++|.. .|.|++.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeee
Confidence 9999999998765432 1223568999975 3889888877643
No 129
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=1.6e-15 Score=137.99 Aligned_cols=114 Identities=27% Similarity=0.446 Sum_probs=94.1
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
+.+...+.++.+.|.|+|++|++|+..+ ..+.+||||++++.+ +..+|++++++.||+|||+|.|.+.. +....
T Consensus 3 l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~ 82 (123)
T cd08390 3 LWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRT 82 (123)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccE
Confidence 3344444456679999999999999988 678899999999853 46789999999999999999999853 23468
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
|.|+|||.+.. ++++||++.++|.++..... ...|++|++
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~~ 123 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLEP 123 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecCCC-----ceEEEeCCC
Confidence 99999999987 79999999999999987642 468999863
No 130
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1e-15 Score=137.72 Aligned_cols=103 Identities=30% Similarity=0.363 Sum_probs=91.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
|.|+|+|++|+||+.. +..|.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987 5568999999999977 468999999999999999999999887789999999999876
Q ss_pred CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~ 476 (763)
+|++||++.+++.++..+ ....||-|.+.
T Consensus 76 ------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999876 45889988763
No 131
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=1.2e-15 Score=138.82 Aligned_cols=103 Identities=25% Similarity=0.420 Sum_probs=92.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCC----CcEEEEEEEeCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP----CTVITIGVFDNCH 436 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~----~~~l~i~V~d~~~ 436 (763)
|.|+|.|++|+||+.+ +..+.+||||++.+++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999986 55688999999999999999999875 89999999999999876 5789999999988
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
++ +|++||++.+++.++..+.....||+|..
T Consensus 78 ~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS--------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC--------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999987777799999954
No 132
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=1.3e-15 Score=144.38 Aligned_cols=105 Identities=30% Similarity=0.438 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEe
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKD 107 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d 107 (763)
..+.|.|+|++|+||+..+..+.+||||++++. .++++|++++++.||.|||+|.|.+. ++....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 568999999999999999988999999999984 25789999999999999999999852 3345689999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
++.. ++++||++.+++.++..... ...|+.+..
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9988 79999999999999875532 467877654
No 133
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.64 E-value=3.9e-16 Score=142.99 Aligned_cols=113 Identities=27% Similarity=0.292 Sum_probs=91.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|+ +....|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|.+. ++..
T Consensus 5 ~~sL~Y~--~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~ 82 (136)
T cd08406 5 LLSLSYL--PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQD 82 (136)
T ss_pred EEEEEEc--CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCC
Confidence 4555555 55669999999999999999889999999999954 2568999999999999999999984 3557
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
..|.|+|||++.. ++++||++.+..... + ....+|..+....
T Consensus 83 ~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~ 125 (136)
T cd08406 83 LSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASL 125 (136)
T ss_pred cEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCC
Confidence 8899999999987 999999999966532 2 1245677666544
No 134
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.64 E-value=1.3e-15 Score=139.41 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=83.0
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 97 (763)
+.+.+.|.+..+.|.|+|++|+||...+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 4 l~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~ 83 (138)
T cd08407 4 VLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLA 83 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhC
Confidence 44444444566799999999999999873 35589999999976 2568999999999999999999984 345
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccc
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNE 125 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~ 125 (763)
...|.|+|||.+.+ ++++||++.+.+..
T Consensus 84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 84 ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 67899999999998 89999999999864
No 135
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=5.3e-16 Score=143.06 Aligned_cols=115 Identities=24% Similarity=0.401 Sum_probs=94.0
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~ 99 (763)
+.+.+.+....+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +...
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 3444445567789999999999999999889999999999964 36789999999999999999999853 3456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
.|.|+|||.+.. ++++||++.+++.... ....+|+.+....+
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 899999999987 8999999999997521 12467888766544
No 136
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=1.5e-15 Score=141.22 Aligned_cols=102 Identities=31% Similarity=0.533 Sum_probs=89.8
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeeeeCCCCCC
Q 004297 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----------------------------KGTTRHFEKKTNP 83 (763)
Q Consensus 33 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----------------------------~~kT~~~~~t~nP 83 (763)
..++.+.|.|+|++|++|...|..|.+||||++.+.+. .++|+++.++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 35678999999999999999999999999999999642 3689999999999
Q ss_pred eeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 84 EWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 84 ~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|||+|.|.+.++....|.|+|||++ +++||++.+++.++... ...+||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 99999999997766789999999998 89999999999999832 25789986
No 137
>PLN03008 Phospholipase D delta
Probab=99.63 E-value=1.8e-15 Score=169.79 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=94.0
Q ss_pred CCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 383 RGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 383 ~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
.++|||||+|.++++ ..||+++++++||+|||.|.|.|.++...|+|.|||+|.++ +++||.+.|+|.++
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g---------aD~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG---------AQIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC---------CceeEEEEEEHHHc
Confidence 457899999999886 46999999999999999999999998889999999999885 57999999999999
Q ss_pred cCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeecc
Q 004297 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (763)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 497 (763)
..|.....|++|.+...+-.+..|+|+++++|.+..
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 999999999999876654445568999999997764
No 138
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=2.8e-15 Score=134.51 Aligned_cols=112 Identities=28% Similarity=0.423 Sum_probs=95.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~~~~~ 441 (763)
|+|.|++|+||+.. +..|.+||||++.+++ +.++|+++.++.||.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999986 4567899999999965 45899999999999999999999987 4678999999998765
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
++++||++.+++.++..+.....|++|.. +|..+.|.+.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 -----KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred -----CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 78999999999999998888899999964 34445576654
No 139
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=2e-15 Score=135.96 Aligned_cols=95 Identities=27% Similarity=0.329 Sum_probs=83.8
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecC-CCCceEEEEEEeCCCC-
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR-IQSSVLEVTVKDKDFV- 111 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~~l~i~V~d~~~~- 111 (763)
...++.|+|+|++|++|+. +..+.+||||+|++++++++|++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3567899999999999984 567889999999999999999999999999999999997532 3468899999999998
Q ss_pred CCeeeEEEEEEccccCCC
Q 004297 112 KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~ 129 (763)
+|++||++.++|.....+
T Consensus 103 ~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 103 DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCeeEEEEEEecCCcee
Confidence 999999999999977643
No 140
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=1.2e-15 Score=141.00 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--CE---EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--QK---WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~~---~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~ 432 (763)
.+.|.|.|++|+||+.+ +..|.+||||++.+. ++ ..+|+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 37899999999999987 556899999999873 32 4789999999999999999999874 3567999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|++.++ ++++||++.+++... +....+|++|..
T Consensus 91 d~d~~~--------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT--------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC--------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 999876 789999999999983 445688998854
No 141
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.63 E-value=2.6e-15 Score=138.08 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=89.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~ 434 (763)
+.|.|+|++|+||+.. +..+.+||||++.+.+ ..++|+++.++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 6899999999999976 4567899999998853 578999999999999999999998754 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+..+ ++++||++.++|+++... ....||+|.+
T Consensus 90 ~~~~--------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT--------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC--------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8765 789999999999999754 5688999976
No 142
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=3e-15 Score=139.03 Aligned_cols=107 Identities=28% Similarity=0.481 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC-CCceEEEE
Q 004297 40 LYVRVVKAKDLPPKDVT--------------GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVT 104 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~--------------~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~l~i~ 104 (763)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998744 3689999999999999999999999999999999997432 35689999
Q ss_pred EEeCCCC-CCeeeEEEEEEccccCCCCCCCC---CCcCeEEEeecCC
Q 004297 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPDS---PLAPQWYRLEDRK 147 (763)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~---~~~~~w~~L~~~~ 147 (763)
|||++.. +|++||++.+++.++..... +. ...++|+.|....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGD-EGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCc-cccCCccCceEEEeecCc
Confidence 9999998 99999999999999876531 11 1346899887654
No 143
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=3.4e-15 Score=135.85 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=92.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCC-CCCCeeccEEEEEecCC---CCceEEEEEEeCCCC-C
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~---~~~~l~i~V~d~~~~-~ 112 (763)
|.|.|+|++|++|+..+..+.+||||+++++++..+|+++.+ +.||.|||+|.|.+... ....|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999998888889999999999998889998874 89999999999999765 257899999999988 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
+++||++.+++.++..+. ....|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998653 25789999875
No 144
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=2.9e-15 Score=138.63 Aligned_cols=91 Identities=38% Similarity=0.569 Sum_probs=84.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
.|.|+|+|++|++|+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999998887 8999999999999999999999999999999999999875 77899999999988 8999
Q ss_pred eEEEEEEccccCCC
Q 004297 116 MGRVLFDLNEIPKR 129 (763)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (763)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999865
No 145
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=4.5e-15 Score=137.33 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=87.8
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEE
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i 429 (763)
.+..|.|+|.|++|+||+.+ +..|.+||||++.++ + ...+|+++++++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 34558999999999999987 566899999999884 2 357899999999999999999998743 347999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~--------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG--------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC--------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999876 889999999999875 445688888864
No 146
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=6.5e-15 Score=132.49 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=83.0
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCC-CCccccEEEEEeeCC--CcEEEE
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSP-TPKWNEQYTWEVFDP--CTVITI 429 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~-~P~wne~~~~~v~~~--~~~l~i 429 (763)
.|..|.|.|.|++|+||++++ ..+.+||||+|.+ ++ .+.||+++++|+ ||+|||.|.|+|... .-.|.|
T Consensus 10 ~p~~~rLtV~VikarnL~~~~---~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSS---TPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred cCcCCeEEEEEEEccCCCccc---CCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 456699999999999999872 3466799999976 22 357999999996 699999999999853 457889
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+|||++..+ ++++||++.+..+... +....+|..+..
T Consensus 87 ~v~d~~~~~--------~n~~IG~v~lG~~~~~-~~~~~hW~~m~~ 123 (135)
T cd08692 87 KLYSRSSVR--------RKHFLGQVWISSDSSS-SEAVEQWKDTIA 123 (135)
T ss_pred EEEeCCCCc--------CCceEEEEEECCccCC-chhhhhHHHHHh
Confidence 999998765 8899999999997642 222366766543
No 147
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.62 E-value=2.8e-16 Score=159.80 Aligned_cols=105 Identities=33% Similarity=0.578 Sum_probs=94.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC-CCCceEEEEEEeCCC
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-IQSSVLEVTVKDKDF 110 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~~l~i~V~d~~~ 110 (763)
...|+|+|.+|+||.++|.+|.+||||++++-+ .+++|++++.++||+|||+|.|.+.. .....|.|+|||+|+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 358999999999999999999999999999965 47899999999999999999999843 246789999999999
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
. ++||+|+.++.+++|.+.+ ...||.|.++.
T Consensus 259 TsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred cccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9 9999999999999999764 67899998865
No 148
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=6.4e-15 Score=135.75 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=84.1
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 430 (763)
+..|.|.|.|++|++|+.+ +..|.+||||++.+ +. +..+|+++++++||+|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 4458999999999999987 55689999999987 22 347999999999999999999998642 3479999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ +|++||++.|+...... ....+|+.|..
T Consensus 88 V~d~d~~~--------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 88 VYGHNVKS--------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEeCCCCC--------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 99998865 89999999977654432 12467887754
No 149
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.2e-15 Score=137.79 Aligned_cols=102 Identities=31% Similarity=0.549 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeeeCCCCCCeeccEEEEEecCC---------------CCce
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG----NYKGTTRHFEKKTNPEWNQVFAFSKDRI---------------QSSV 100 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------------~~~~ 100 (763)
|.|+|++|++|+.. ..+.+||||+++++ .++++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6788999999999999999999998654 4678
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
|.|+|||.+.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 8999999999999988542 257899999875
No 150
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=6.6e-15 Score=132.60 Aligned_cols=112 Identities=29% Similarity=0.458 Sum_probs=88.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHG 439 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~ 439 (763)
|+|.|++|+||+.. |.+||||++.++++ .++|+++.+ .||.|||+|.|.+.. ....|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 68999999999885 589999999 999999999999986 3457888888876543
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
++..+|++.|+. +..+.....||+|......+ +..|+|+++++|
T Consensus 74 -------~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -------RDIVIGKVALSK--LDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -------CeeEEEEEEecC--cCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 566777766554 44466679999997654422 356999998865
No 151
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=4.9e-15 Score=136.31 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=80.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-------CEEEeeeeecCCCCCccccEEEEEeeCC-----CcEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-------QKWVRTRTIIDSPTPKWNEQYTWEVFDP-----CTVIT 428 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-------~~~~~T~~~~~t~~P~wne~~~~~v~~~-----~~~l~ 428 (763)
.+.|.|.|++|+||+++ +..|.+||||+|.+. ...+||+++++|+||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 36899999999999987 556899999999884 3468999999999999999999998752 45899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccC
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~ 463 (763)
|+|||++..+ +|++||++.++|.++..
T Consensus 92 ~~V~d~d~~~--------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG--------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC--------CCcEeEEEEEeHHHCCc
Confidence 9999999876 78999999999999863
No 152
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.61 E-value=3.2e-15 Score=139.05 Aligned_cols=100 Identities=27% Similarity=0.434 Sum_probs=86.8
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----------------------------EEEeeeeecCCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----------------------------KWVRTRTIIDSP 408 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----------------------------~~~~T~~~~~t~ 408 (763)
.++.+.|+|+|++|+||.++ |..|.+||||++.+++ ..++|+++.+++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAK---DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred CCCeEEEEEEEEeccCCccc---CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 57889999999999999987 6678999999998853 237899999999
Q ss_pred CCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 409 TPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 409 ~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
||.|||.|.|.+.+. ...|.|+|||++ |++||++.++++++... ...+||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d------------d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD------------DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC------------CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999999999874 678999999973 57999999999999843 46999986
No 153
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=1.2e-14 Score=132.05 Aligned_cols=118 Identities=27% Similarity=0.338 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
+|.|+|.+|+ |...+..+.+||||+++++++ ..+|++++++.||.|||+|.|.+.+ ...|.|+|||++.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555788999999999987 8999999999999999999999864 57899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAV 159 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~ 159 (763)
|++.++|.++.............|++|.... +....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999865432222234588888654 224579988764
No 154
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=4.9e-15 Score=136.30 Aligned_cols=103 Identities=32% Similarity=0.465 Sum_probs=88.2
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeeCCCCCCeeccEEEEEecCC---
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKDRI--- 96 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~~~--- 96 (763)
+.+...+......|.|+|++|++|+..+..+.+||||+|++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 4444445566779999999999999988889999999999963 468999999999999999999998542
Q ss_pred -CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCC
Q 004297 97 -QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 97 -~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 129 (763)
....|.|+|||++.. ++++||++.++|.++..-
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 356899999999988 799999999999999844
No 155
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=1.1e-14 Score=132.23 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=93.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
.|+|+|.+|+ |... +..+.+||||++.++++ ..+|+++.++.||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6899999998 5443 44678999999999888 899999999999999999999975 4678999999999876
Q ss_pred CCCCCCCCccEEEEEecccccCCC---e--EeeeEeeeeeCCCCcccceEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDR---V--YTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
.|++||++.++|.++..+. . ...|++|........+..|+|++++
T Consensus 75 -----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -----ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -----CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7899999999999986432 1 3468999754421224569998865
No 156
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.4e-15 Score=137.58 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=89.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC----CEEEeeeeecCCCCCccccEEEEEeeCC----------------
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---------------- 423 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~----~~~~~T~~~~~t~~P~wne~~~~~v~~~---------------- 423 (763)
|+|.|++|+||+.+ ..|.+||||++.++ +..++|+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~----~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK----SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc----cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999875 24789999999998 6789999999999999999999998764
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCC
Q 004297 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478 (763)
Q Consensus 424 ~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~ 478 (763)
...|.|+|||++..+ ++++||++.+++.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~--------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS--------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc--------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 458999999998765 78999999999999987777899999976553
No 157
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=2e-15 Score=139.69 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=85.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
..+.|.|+|++|+||+++ +..|.+||||++.+ ++ ...+|++++++.||.|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAM---DINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 348999999999999876 55689999999987 33 24789999999999999999999863 246899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||++.++ +|++||++.+++.+. +....+|++|..
T Consensus 90 ~d~~~~~--------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 90 MDKDRLS--------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EECCCCC--------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 9999876 789999999999986 444577877754
No 158
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=1.5e-14 Score=134.18 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=95.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeeeeCCCCCCeeccEEEEEecCC--------CCceEEEE
Q 004297 40 LYVRVVKAKD--LPPKDVTGSCDPYVEVKM--G---NYKGTTRHFEKKTNPEWNQVFAFSKDRI--------QSSVLEVT 104 (763)
Q Consensus 40 L~v~v~~a~~--L~~~~~~~~~dPyv~v~~--~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~--------~~~~l~i~ 104 (763)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 677777789999999997 2 2688999999999999999999998542 24679999
Q ss_pred EEeCCCC--CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 105 VKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 105 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|||.+.+ +|++||++.++|+.+..+.. ...|++|.+.. +...|.|.+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~-k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMDGR-KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCc-----ceEEEEhhhCC-CCcCCEEEEEEEecC
Confidence 9999986 79999999999999976632 56799988532 345699999988763
No 159
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.60 E-value=2.5e-15 Score=138.60 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=87.6
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 430 (763)
+..|.|.|+|++|+||+++ +..|.+||||++.+.+ ...+|+++++++||+|||.|.|.+... ...|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 3458999999999999987 5568899999998843 357999999999999999999998753 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ +|++||.+.+++.. .+....+||++..
T Consensus 87 V~d~d~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGK--------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEeCCCCC--------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99998765 78999999999986 3444578998864
No 160
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=1.1e-14 Score=131.00 Aligned_cols=104 Identities=27% Similarity=0.393 Sum_probs=91.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|+|+|++|++|+..+..+.+||||++++++ ...+|+++.++.||.|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 568999999999999999999998764 47899999999988 8899
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
||++.+++.++.... ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998762 357888887653
No 161
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=5.9e-15 Score=135.96 Aligned_cols=116 Identities=21% Similarity=0.357 Sum_probs=92.2
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
+.+...+....+.|.|+|++|+||+..+..+.+||||++.+.+ .++||++++++.||+|||+|.|.+. ++..
T Consensus 4 i~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~ 83 (138)
T cd08408 4 LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSE 83 (138)
T ss_pred EEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCc
Confidence 3334444456679999999999999998889999999999953 2468999999999999999999985 3556
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||.+.. ++++||++.+++...-.+ ...+|+.+....+
T Consensus 84 ~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 84 VTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred cEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 7999999999988 999999999987644321 1346777765443
No 162
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=1.4e-14 Score=133.43 Aligned_cols=105 Identities=14% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITI 429 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i 429 (763)
+..+.|.|+|++|+||+++ +..|.+||||++.+.+ .+.||++++++.||+|||.|.|.+.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4458999999999999987 5568899999998832 24799999999999999999999874 3568999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
.|||.+..+ ++++||++.+++.....+ ...+|+.+..
T Consensus 89 ~V~~~~~~~--------~~~~iG~v~l~~~~~~~~-~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMK--------RKEMIGWFSLGLNSSGEE-EEEHWNEMKE 125 (138)
T ss_pred EEEECCCCC--------CCcEEEEEEECCcCCCch-HHHHHHHHHh
Confidence 999998865 889999999998865321 2357777643
No 163
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=2.6e-15 Score=138.83 Aligned_cols=115 Identities=29% Similarity=0.425 Sum_probs=93.9
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
..++..|+ .....|.|+|++|++|+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+.. ..
T Consensus 4 l~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~ 81 (136)
T cd08404 4 LLLSLCYQ--PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELE 81 (136)
T ss_pred EEEEEEEe--CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhC
Confidence 34555565 45678999999999999999889999999999853 25689999999999999999999843 23
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
...|.|+|||++.. ++++||++.+++.. . . ....+|+.|.+..+
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~-----~~~~~w~~l~~~~~ 126 (136)
T cd08404 82 DISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-G-----SGGHHWKEVCNPPR 126 (136)
T ss_pred CCEEEEEEEECCCCCCCccEEEEEECCcC-C-C-----chHHHHHHHHhCCC
Confidence 56799999999998 89999999999987 2 2 12578988876554
No 164
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.59 E-value=9.7e-15 Score=131.35 Aligned_cols=101 Identities=17% Similarity=0.310 Sum_probs=84.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCC-CCeeccEEEEEecC-CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKT-NPEWNQVFAFSKDR-IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~-nP~Wne~f~f~v~~-~~~ 98 (763)
++-+.+.+.+..+.|.|+|++|+||+..+..+.+||||+|++-. .++||+++++|. ||+|||+|.|++.. ...
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 45556667788899999999999999876567789999999853 478899999995 69999999999853 234
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcccc
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (763)
-.|.|+|||++.. ++++||++.+.....
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 5788999999987 999999999998753
No 165
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.2e-14 Score=130.55 Aligned_cols=111 Identities=30% Similarity=0.466 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999998765578899999999987 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELM 156 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~ 156 (763)
++.+++.++..+. ....|++|....+ ...|.+.
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~-~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGG-GKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCC-ccCceEE
Confidence 9999999988653 2578999987643 3456664
No 166
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.59 E-value=2.6e-15 Score=138.41 Aligned_cols=115 Identities=22% Similarity=0.410 Sum_probs=90.8
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|. +..+.|.|+|++|++|+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+. +...
T Consensus 4 ~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 4 LLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred EEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 4555555 55679999999999999999889999999999832 3578999999999999999999984 3334
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||++.. ++++||++.+....... ....+|+.|....+
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~ 126 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQR 126 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCC
Confidence 5799999999987 99999999876433221 12467888777654
No 167
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.59 E-value=3e-15 Score=138.53 Aligned_cols=114 Identities=30% Similarity=0.404 Sum_probs=92.0
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~ 99 (763)
+.+...+.+..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+.. ....
T Consensus 4 l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~ 83 (136)
T cd08402 4 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKV 83 (136)
T ss_pred EEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCC
Confidence 3444444567789999999999999999889999999999953 35689999999999999999999853 2345
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. ++++||++.+++.... ....+|+++....
T Consensus 84 ~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~ 125 (136)
T cd08402 84 HLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASP 125 (136)
T ss_pred EEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCC
Confidence 799999999988 8999999999997532 1246787776554
No 168
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.59 E-value=2.9e-14 Score=130.42 Aligned_cols=116 Identities=27% Similarity=0.390 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeeeCCCCCCee-ccEEEEEecCCCCceEEEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVT 104 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~l~i~ 104 (763)
.+.|++++|+||+ .+..|.+||||++.+.+ ++++|++++++.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 67789999999999953 3689999999999999 9999999853 5689999
Q ss_pred EEeCCCC----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEE
Q 004297 105 VKDKDFV----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAV 159 (763)
Q Consensus 105 V~d~~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~ 159 (763)
|||++.. .+++||++.+++.++..... .....+||+|+.+.. ..+.|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997653 27999999999999986532 233678999987653 35789998765
No 169
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.59 E-value=2.3e-14 Score=131.05 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=91.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-------------CEEEeeeeecCCCCCcc-ccEEEEEeeCCCcEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-------------QKWVRTRTIIDSPTPKW-NEQYTWEVFDPCTVIT 428 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-------------~~~~~T~~~~~t~~P~w-ne~~~~~v~~~~~~l~ 428 (763)
++.|.+++|+||+ . +..|++||||++.+. ++.++|+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4678999999997 4 557899999999883 23689999999999999 999999985 467899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC---CeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD---RVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
|+|||++..+ + ...+++||++.|++.++.++ .....||+|......+ ...|+|.+.+
T Consensus 77 v~V~D~~~~~---~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS---R--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC---C--ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976432 0 01278999999999999654 3456799986443322 2358888754
No 170
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.59 E-value=1.7e-14 Score=133.05 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=85.6
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 430 (763)
+..|.|+|+|++|++|+++ +..|.+||||++.+. + ...+|+++++++||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 4458999999999999987 556899999999873 2 257999999999999999999998642 3469999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ +|++||++.|++... +....+|+++..
T Consensus 88 v~d~~~~~--------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 88 VVDYDRVG--------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEECCCCC--------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 99999876 899999999998844 334578888754
No 171
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.58 E-value=5.8e-15 Score=136.23 Aligned_cols=104 Identities=18% Similarity=0.337 Sum_probs=86.4
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
..+.|.|.|++|+||+++ + .+.+||||++.+.+ ...+|++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 13 TLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred CCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 347899999999999987 4 57899999998732 35699999999999999999999873 246899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||.+..+ ++++||++.|+......+....+|..+..
T Consensus 89 ~~~~~~~--------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVR--------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCC--------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9998765 78999999999877666666678887754
No 172
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=9.3e-15 Score=132.56 Aligned_cols=91 Identities=31% Similarity=0.576 Sum_probs=81.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK--GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~--~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
.|+|+|++|++|+..+..+.+||||++++++++ .+|++++++.||+|||+|.|.+..+....|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999988999999999999864 5788889999999999999998666678999999999998 8999
Q ss_pred eEEEEEEccccCCC
Q 004297 116 MGRVLFDLNEIPKR 129 (763)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (763)
||++.+++.+....
T Consensus 81 iG~~~i~l~~~~~~ 94 (124)
T cd04037 81 IGETVIDLEDRFFS 94 (124)
T ss_pred eEEEEEeecccccc
Confidence 99999999987643
No 173
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.3e-14 Score=128.92 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecc
Q 004297 382 GRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (763)
Q Consensus 382 ~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~ 459 (763)
..|++||||++.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||++.+ +|++||++.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~---------~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR---------HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC---------CCCeEEEEEecHH
Confidence 4688999999999885 57999999999999999999999875 57899999999875 4789999999999
Q ss_pred cccC-CCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 460 TLET-DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 460 ~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
++.. +.....||+|.+ .+.|+|++++.|.+
T Consensus 80 ~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9853 445679999953 34699999998865
No 174
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.58 E-value=1.7e-14 Score=133.15 Aligned_cols=113 Identities=21% Similarity=0.379 Sum_probs=90.2
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|+ ...+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++..
T Consensus 5 ~~sl~y~--~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~ 81 (137)
T cd08409 5 QISLTYN--PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT 81 (137)
T ss_pred EEEEEEC--CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence 4555555 55679999999999999888 78899999999864 3668999999999999999999984 4455
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
..|.|+|||.+.. ++++||++.+.......+. ...+|..+...
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~ 125 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSK 125 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhC
Confidence 7899999999987 8999999999865554332 24556665544
No 175
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=2.3e-14 Score=131.71 Aligned_cols=112 Identities=34% Similarity=0.548 Sum_probs=95.8
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC-CCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~ 99 (763)
.++..|+. +.|+|+|++|++|+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+... ...
T Consensus 5 ~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~ 80 (131)
T cd04026 5 YLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDR 80 (131)
T ss_pred EEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCC
Confidence 45555554 68999999999999988888999999999964 578999999999999999999998643 356
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. ++++||++.+++.++... ....||+|.+..
T Consensus 81 ~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 81 RLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred EEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 899999999987 899999999999999854 257899998765
No 176
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=6.2e-15 Score=136.32 Aligned_cols=103 Identities=24% Similarity=0.334 Sum_probs=88.2
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-----EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~ 432 (763)
.+.|.|.|++|+||+.. +..+.+||||++.+.+. ..+|+++.++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 37999999999999976 45678999999988442 57999999999999999999998764 578999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~ 476 (763)
|.+..+ ++++||.+.+++++ .+...++|++|...
T Consensus 90 d~~~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG--------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC--------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998765 78999999999999 55567899999753
No 177
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.57 E-value=7e-15 Score=136.06 Aligned_cols=115 Identities=26% Similarity=0.460 Sum_probs=92.1
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeeCCCCCCeeccEEEEEec--CCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--N---YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 97 (763)
..+++.|+ ...+.|.|+|++|+||+..+..+.+||||++++. + .+.+|++++++.||.|||+|.|.+. ...
T Consensus 4 l~~sl~y~--~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~ 81 (136)
T cd08405 4 LLLSLCYN--PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLR 81 (136)
T ss_pred EEEEEEEc--CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhC
Confidence 34555665 4567899999999999998888999999999983 2 3578999999999999999999974 333
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
...|.|+|||.+.. ++++||++.+++.+... ...+|+.+....+
T Consensus 82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 82 ETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred CCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 56899999999988 89999999999987521 2456766665543
No 178
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.57 E-value=2.2e-14 Score=130.12 Aligned_cols=89 Identities=27% Similarity=0.395 Sum_probs=79.0
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE--EeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~ 439 (763)
+|+|.|++|+||+++ +..|++||||++.+++.. .+|+++++++||+|||.|.|.+..+ ...|.|+|||++..+
T Consensus 1 ~lrV~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPK---DPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCC---CCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC-
Confidence 478999999999987 566899999999998875 5788899999999999999998765 678999999999876
Q ss_pred CCCCCCCCCCccEEEEEeccccc
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
+|++||++.++|.+..
T Consensus 77 -------~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 -------SDDLIGETVIDLEDRF 92 (124)
T ss_pred -------CCceeEEEEEeecccc
Confidence 7899999999999764
No 179
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-15 Score=153.46 Aligned_cols=102 Identities=29% Similarity=0.446 Sum_probs=89.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~ 434 (763)
..|.|.|.+|+||.+| |.+|.|||||++++- ..+.+|++++.++||+|||+|+|.+.. ....|.|+||||
T Consensus 180 ~~l~v~i~ea~NLiPM---DpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ceEEEEehhhcccccc---CCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 4899999999999999 777999999999982 235899999999999999999999884 467899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|+.+ +++|+|.....+++|... ...+||.|.+
T Consensus 257 DrTs--------RNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 257 DRTS--------RNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cccc--------cccccceecccHHHHhhc-chhhHHHHhh
Confidence 9976 899999999999999754 3578998865
No 180
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=5.2e-14 Score=126.78 Aligned_cols=111 Identities=29% Similarity=0.487 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCC--CCceEEEEEEeCCCC-CCee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|+|++|++|+.. +.+||||+++++++ ..+|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999985 479999988 9999999999998542 345788888998876 6677
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEEEE
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (763)
+|.+.++.... + ....+||+|.+..+ ....|+|++.++|
T Consensus 78 ~g~v~l~~~~~--~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL--G-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC--C-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554333 2 23578999997654 3467999998865
No 181
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.56 E-value=2.4e-14 Score=132.07 Aligned_cols=114 Identities=24% Similarity=0.352 Sum_probs=90.4
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~ 98 (763)
.+++.|. ++.+.|+|+|++|++|+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~~~y~--~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 4 MFSLCYL--PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred EEEEEEc--CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 4555555 56789999999999999999889999999999843 35689999999999999999998743 334
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||++.. ++++||++.+++.... .....|+.+....+
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~ 125 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPR 125 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCC
Confidence 5799999999988 8999999999876322 12356776655443
No 182
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=1e-13 Score=127.06 Aligned_cols=116 Identities=27% Similarity=0.446 Sum_probs=97.7
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeeeCCCC-CCeeccEEEEEecCCCCceEEEEEEeC
Q 004297 38 QYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMG------NYKGTTRHFEKKT-NPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~--~~~~~dPyv~v~~~------~~~~kT~~~~~t~-nP~Wne~f~f~v~~~~~~~l~i~V~d~ 108 (763)
..|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47899999999999877 57889999999994 4568999987765 999999999998765567899999999
Q ss_pred CCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEE
Q 004297 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWM 161 (763)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~ 161 (763)
+..++++||++.+++.++..+ ..|++|.+..|. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 877899999999999998543 368999987765 456899988765
No 183
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.55 E-value=1.1e-14 Score=134.53 Aligned_cols=115 Identities=30% Similarity=0.445 Sum_probs=95.1
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeeCCCCCCeeccEEEEEecCC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRI--QS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~--~~ 98 (763)
.+++.|+ ...+.|.|+|++|++|+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+... ..
T Consensus 4 ~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 4 LLSLSYL--PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred EEEEEee--CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 4555555 445799999999999999888889999999999652 56899999999999999999998643 25
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (763)
..|.|+|||.+.. ++++||.+.+++++ . + ....+|++|.+..++
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~-~-----~~~~~W~~l~~~~~~ 126 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPDS-G-G-----EELEHWNEMLASPRK 126 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCCC-C-C-----cHHHHHHHHHhCCCC
Confidence 7899999999987 89999999999998 2 2 236789999887543
No 184
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=178.13 Aligned_cols=119 Identities=24% Similarity=0.470 Sum_probs=103.4
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCC--cEEEEEEEeCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPC--TVITIGVFDNC 435 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~--~~l~i~V~d~~ 435 (763)
-..|.|.|+|++|+||. +..|++||||++.+|++ ..||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 45799999999999997 33589999999999965 789999999999999999999999874 78999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceE---EEEEEEEee
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGE---IHLAVRFTC 495 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~~~~ 495 (763)
.++ + +.||++.|++.++..++.++.||+|.. +| +|.|+ |+++++|++
T Consensus 2052 ~f~--------k-d~~G~~~i~l~~vv~~~~~~~~~~L~~---~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFG--------K-SSLGKVTIQIDRVVMEGTYSGEYSLNP---ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccC--------C-CCCceEEEEHHHHhcCceeeeeeecCc---cc-ccCCCcceEEEEEEecC
Confidence 875 4 499999999999999999999999974 22 34577 999888853
No 185
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.54 E-value=3.1e-14 Score=128.63 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=83.2
Q ss_pred EEEEccCCCCCccCCCCCCCCcEEEEEECCE-------EEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCC--
Q 004297 367 GILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCH-- 436 (763)
Q Consensus 367 ~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~-- 436 (763)
..++|++|++. +..|.+||||++.+.+. .++|+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 45789999987 55689999999988553 3899999999999999999998653 46789999999986
Q ss_pred --CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 437 --LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 437 --~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
.+ +|++||++.+++++|..+.....|++|..
T Consensus 82 ~~~~--------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS--------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 54 78999999999999987766678899843
No 186
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=1e-13 Score=125.86 Aligned_cols=98 Identities=24% Similarity=0.392 Sum_probs=80.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeCC----CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V 431 (763)
.+.|+|+|++|+||++. +..+.+||||++.+. ....+|+++.++.||.|||.|.|..... ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 37899999999999976 456789999999872 2368999999999999999999964432 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~ 470 (763)
||++.. .+++||++.++|+++..+.....|
T Consensus 91 ~d~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 91 LDEDRF---------GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EEcCCc---------CCeeEEEEEEEcccCCCCcceEee
Confidence 999764 478999999999999887644333
No 187
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.54 E-value=1.5e-13 Score=126.21 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=95.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-----
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV----- 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~----- 111 (763)
..|.|.|++|++|+.++ +|||.+.++++. .||+++.++.||.|+|.|.|..... ...++|.||+.+..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 47999999999999865 899999999976 6999999999999999999986443 46799999865532
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC---------ccceEEEEEEEEcc
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD---------KVRGELMLAVWMGT 163 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---------~~~G~i~l~~~~~~ 163 (763)
++++||.+.|++.++..+ ....+||+|.+..+. ...+.|++++.|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 579999999999999954 347899999987754 23478999988864
No 188
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=5.4e-14 Score=124.95 Aligned_cols=101 Identities=28% Similarity=0.430 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCC
Q 004297 55 VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (763)
Q Consensus 55 ~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (763)
..|.+||||+++++++ ..+|++++++.||.|||+|.|.+.+.....|.|+|||.+..++++||++.++|+++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4688999999999885 579999999999999999999997766788999999999888999999999999996542
Q ss_pred CCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 134 SPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
....+||+|.+. ..|+|++++.|.+
T Consensus 86 -~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 86 -SVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred -hccceeEECCCC----CCCEEEEEEEEec
Confidence 235789999862 3599999988764
No 189
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=1.3e-13 Score=120.53 Aligned_cols=91 Identities=29% Similarity=0.539 Sum_probs=68.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~ 438 (763)
|.|.|++|+||+ +.+||||++.+++ ..++|+++.+|+||+|||.|+|++.. ...|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 578999999995 4599999998853 35899999999999999999999864 779999999984100
Q ss_pred -CCCCCCCCCCCccEEEEEecc--cccCCC
Q 004297 439 -GGDKAGGARDSRIGKVRIRLS--TLETDR 465 (763)
Q Consensus 439 -~~~~~~~~~d~~lG~v~i~l~--~l~~~~ 465 (763)
..+ ..++|+++|++.|.|. .+....
T Consensus 72 ~~~d--~~~~d~~~G~g~i~Ld~~~~~~~~ 99 (118)
T cd08686 72 VKLD--GEGTDAIMGKGQIQLDPQSLQTKK 99 (118)
T ss_pred cccc--ccCcccEEEEEEEEECHHHhccCC
Confidence 000 0127999977766654 454443
No 190
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.52 E-value=2.2e-13 Score=124.88 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=93.6
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE------CCEEEeeeeecCCC-CCccccEEEEEeeCCC-cEEEEEEEeC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY------GQKWVRTRTIIDSP-TPKWNEQYTWEVFDPC-TVITIGVFDN 434 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~------~~~~~~T~~~~~t~-~P~wne~~~~~v~~~~-~~l~i~V~d~ 434 (763)
.|+|+|++|+||+.++. +..+.+||||++.+ +...++|+++.++. ||.|||.|.|.+..+. ..|.|.|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999998631 13578999999988 34568999988876 9999999999998764 5799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+.. +|++||++.+++.++..+ ..|++|....... ...|.|.+.+++
T Consensus 82 ~~~---------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG---------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCC---------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 764 578999999999999776 3688887644332 235888887765
No 191
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.9e-15 Score=146.84 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=169.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe--c-CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK--D-RIQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v--~-~~~ 97 (763)
++...|+-+ ..++..++..|++|..++.++..|||++..+.+ .+.+|++..+++||.|+|+-.... . +..
T Consensus 83 ~~~~~y~~~--~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDSE--SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhhh--hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 344445544 458899999999999999999999999999986 467889999999999999866553 2 222
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC------CCccceEEEEEEEEcccCCCCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK------GDKVRGELMLAVWMGTQADEAFP 170 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~------~~~~~G~i~l~~~~~~~~d~~~~ 170 (763)
...+.+.|.|.+.. .+++.|+..+++..+..... .....|+.-..+. ..+.+|+|.+++.+..
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s------- 230 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSS------- 230 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCc-------
Confidence 45677888998888 88999999998888875532 2234454333221 1134577776664432
Q ss_pred ccccccccccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCC
Q 004297 171 EAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTIN 245 (763)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~n 245 (763)
....+.|+++.|.+|..+|.++.+||||..++.. .+.+|.+.++ +.|
T Consensus 231 ---------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~ 282 (362)
T KOG1013|consen 231 ---------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLN 282 (362)
T ss_pred ---------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCC
Confidence 2225889999999999999999999999999863 4577888776 999
Q ss_pred ccccceEEEEeeC--CCCCeEEEEEEEccCCCCCceeEEEEEecc
Q 004297 246 PMWNEDLMFVAAE--PFEEHLILTVEDRVAPNKDEVLGKCMIPLQ 288 (763)
Q Consensus 246 P~wne~f~f~~~~--~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~ 288 (763)
|.|++.|.|.+.. .....+.|.|||++..+..+.+|-+.....
T Consensus 283 p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 283 PEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred ccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999998743 335589999999988878999997765544
No 192
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=1.6e-13 Score=124.60 Aligned_cols=103 Identities=29% Similarity=0.460 Sum_probs=86.6
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe-c--CC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK-D--RI 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v-~--~~ 96 (763)
..+++.|+ +..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|.. . +.
T Consensus 4 ~~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~ 81 (123)
T cd04035 4 LEFTLLYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI 81 (123)
T ss_pred EEEEEEEe--CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence 34555565 45679999999999999888888999999999843 468999999999999999999963 2 22
Q ss_pred CCceEEEEEEeCCCCCCeeeEEEEEEccccCCC
Q 004297 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 129 (763)
....+.|+|||.+..++++||++.++++++..+
T Consensus 82 ~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 82 QRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 356899999999877889999999999999866
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=2.1e-13 Score=123.25 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=82.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCC----C-
Q 004297 44 VVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF----V- 111 (763)
Q Consensus 44 v~~a~~L~~~~~~~~~dPyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~----~- 111 (763)
.++|++|+..+..+.+||||++++.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999998899999999999775 3899999999999999999998643346789999999996 5
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
++++||++.+++.++..... ...|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPG-----QKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCC-----cEEEEEccC
Confidence 89999999999999986532 456778744
No 194
>PLN03008 Phospholipase D delta
Probab=99.48 E-value=2.4e-13 Score=152.96 Aligned_cols=124 Identities=23% Similarity=0.405 Sum_probs=104.1
Q ss_pred eeEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eee
Q 004297 37 MQYLYVRVVKAKDLPPKDV------------------------------------------TGSCDPYVEVKMGNY-KGT 73 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~------------------------------------------~~~~dPyv~v~~~~~-~~k 73 (763)
.|.|.++|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3688999999999875221 247799999999886 569
Q ss_pred eeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--cc
Q 004297 74 TRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KV 151 (763)
Q Consensus 74 T~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~ 151 (763)
|++++++.||+|||+|.|.+.+. ...|.|+|||.|.+++++||++.|+++++..+.. ...|++|.+..++ +.
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPPKA 166 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCCCC
Confidence 99999999999999999999875 4689999999999988999999999999987642 5789999987754 34
Q ss_pred ceEEEEEEEEcccCC
Q 004297 152 RGELMLAVWMGTQAD 166 (763)
Q Consensus 152 ~G~i~l~~~~~~~~d 166 (763)
.|.|+++++|.+...
T Consensus 167 ~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 167 ETAIFIDMKFTPFDQ 181 (868)
T ss_pred CcEEEEEEEEEEccc
Confidence 589999999987544
No 195
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.47 E-value=2.8e-13 Score=118.40 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=67.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeC------
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK------ 108 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~------ 108 (763)
|.|+|.+|++|+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999996 4589999999964 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCeeeEEEEEEcc
Q 004297 109 -DFV-KDDFMGRVLFDLN 124 (763)
Q Consensus 109 -~~~-~d~~lG~~~i~l~ 124 (763)
+.. +|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 344 8999988888765
No 196
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.45 E-value=3.4e-13 Score=119.91 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=76.5
Q ss_pred EEEEEccCCCCCccCCCCCCCCcEEEEEECCE------EEeeeeecCCCCCccccEEEEEeeC-----CCcEEEEEEEeC
Q 004297 366 LGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK------WVRTRTIIDSPTPKWNEQYTWEVFD-----PCTVITIGVFDN 434 (763)
Q Consensus 366 v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~------~~~T~~~~~t~~P~wne~~~~~v~~-----~~~~l~i~V~d~ 434 (763)
+..++|++|+.+ |..|++||||++.+.+. .++|+++++++||+|| .|.|++.+ +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 355689999987 66689999999987432 4899999999999999 68877542 267999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
+..+ +|++||++.+++.+|..++ .+++.+
T Consensus 80 d~~~--------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 80 DSSG--------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 9876 8999999999999998654 445544
No 197
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-13 Score=137.15 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=162.5
Q ss_pred EEEEEEEEccccCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCccccceEEEE--eeCC-CCCeEEEEEEEcc
Q 004297 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDLMFV--AAEP-FEEHLILTVEDRV 272 (763)
Q Consensus 201 ~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~--~~~~-~~~~L~i~V~d~d 272 (763)
.+..+|..|++|.+++.++..|||++..++. .+++|++..+ +.||.|+|.-... ..++ ....+++.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 5889999999999999999999999999974 4578888776 9999999886554 2222 2346888899999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcc
Q 004297 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352 (763)
Q Consensus 273 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~ 352 (763)
.+...+++|+..+.+..+..++. .....|+.-..+... ....+.+..|.+.+++.+.
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~r--ad~~~~E~rg~i~isl~~~------------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSER--ADRDEDEERGAILISLAYS------------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhhc--chhhhhhhccCCccc--ccccchhhccceeeeeccC-------------------
Confidence 88899999999998888765432 223445443333110 0112234567766666441
Q ss_pred hhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---C
Q 004297 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---C 424 (763)
Q Consensus 353 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~ 424 (763)
....-+.|.+++|..|..+ |.+|.+||||...+.. .+.+|.+.+++++|.||++|.|.+... .
T Consensus 230 ------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~ 300 (362)
T KOG1013|consen 230 ------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAY 300 (362)
T ss_pred ------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhc
Confidence 2235778899999999988 6669999999998743 247999999999999999999988742 5
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
..+.|.|||++.-+ ..+++|-+...+...
T Consensus 301 ~kv~lsvgd~~~G~--------s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 301 KKVALSVGDYDIGK--------SNDSIGGSMLGGYRR 329 (362)
T ss_pred ceEEEeecccCCCc--------CccCCCccccccccc
Confidence 68999999988632 567888877655443
No 198
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.42 E-value=4.5e-13 Score=164.70 Aligned_cols=119 Identities=18% Similarity=0.331 Sum_probs=100.2
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCC-CceEEEEEEeCCCCC
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQ-SSVLEVTVKDKDFVK 112 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~~l~i~V~d~~~~~ 112 (763)
.-+|.|.|+|++|+||. +..+.+||||+++++++ +.||++++++.||+|||+|.|.++++. +..|.|+|||+|.++
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 45799999999999998 44689999999999975 889999999999999999999997764 467999999999997
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceE---EEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGE---LMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~---i~l~~~~~ 162 (763)
++.||.++|++.++..+.. ...||+|.+...+ .|. |.+.+.+.
T Consensus 2055 kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k--~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNK--DGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCceEEEEHHHHhcCce-----eeeeeecCccccc--CCCcceEEEEEEec
Confidence 7799999999999997643 6789999964322 355 88876553
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.40 E-value=1.7e-12 Score=115.29 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=75.1
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeeeCCCCCCeeccEEEEEecCCC----CceEEEEEEeCCCC
Q 004297 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNY------KGTTRHFEKKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV 111 (763)
Q Consensus 42 v~v~~a~~L~~~~~~~~~dPyv~v~~~~~------~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~~l~i~V~d~~~~ 111 (763)
+-.++|++|+..+..+.+||||++++.++ .++|++++++.||+|| +|.|...++. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34679999999999999999999998653 4899999999999999 7888764332 57899999999998
Q ss_pred -CCeeeEEEEEEccccCCC
Q 004297 112 -KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~ 129 (763)
+|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 899999999999999844
No 200
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.2e-13 Score=141.59 Aligned_cols=128 Identities=28% Similarity=0.408 Sum_probs=103.4
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC-
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG- 439 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~- 439 (763)
...+.++|+.|+||.+. |..|++||||.+.+|..+.||+++...+||+|||.|.|++.+..+.|.+.|||+|.--.
T Consensus 294 sakitltvlcaqgl~ak---dktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAK---DKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ceeeEEeeeecccceec---ccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 36889999999999987 66699999999999999999999999999999999999999999999999999975210
Q ss_pred --CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 440 --GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 440 --~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
..+..+.+|+|||+..|.+..|.-.. .-||+|.....+.. ..|-|+|.+.+.
T Consensus 371 klrqkl~resddflgqtvievrtlsgem--dvwynlekrtdksa-vsgairlhisve 424 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHISVE 424 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecccch--hhhcchhhccchhh-ccceEEEEEEEE
Confidence 00014458999999999999986544 77999976544333 357776666543
No 201
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.38 E-value=6.1e-12 Score=136.18 Aligned_cols=179 Identities=24% Similarity=0.399 Sum_probs=128.1
Q ss_pred CCchHHHHHHHhcCCCchhHHHHHHHHHHHHH---HHhhhhcccCCchhhHHHHHHHHHHHHcCch--h-HHHHHHHHHH
Q 004297 544 PPLRKEVVEYMLDVGSHMWSMRRILSGIIAVG---KWFDQICNWKNPITTVLIHILFIILVLYPEL--I-LPTVFLYLFL 617 (763)
Q Consensus 544 p~l~~~v~~~~l~~~~n~~r~~~~~~~~~~~~---~~l~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~-~p~~~l~~~~ 617 (763)
|+++..+.. .|+.++...+..++.++ +.+.++++|++|..|+.++++|+++|++|.+ + +|+++++ +.
T Consensus 1 p~lS~~ll~------~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll-~~ 73 (359)
T PF06398_consen 1 PPLSSPLLS------SNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLL-FG 73 (359)
T ss_pred CCcChHHHH------hChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 566666663 89999999998888888 9999999999999999999999999999998 3 5655543 45
Q ss_pred HHhhccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 004297 618 IGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSL-- 695 (763)
Q Consensus 618 ~~~~~y~~~~~~~~~~~~~~s~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l-- 695 (763)
+++..|..++..+...-.. +..+.+. ....++++...-..+..+++.+||.|+.+.+.++.+...
T Consensus 74 il~~~yl~~~p~~~~~~~~-------~~~~~~~------~~~~~ptl~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~ 140 (359)
T PF06398_consen 74 ILLPSYLYRHPSPTSSLPK-------SYEDHNP------EPSEGPTLDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLY 140 (359)
T ss_pred HHHHHHHeecCCCcccccc-------cccccCC------CcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666776665222210000 0000011 111111222113355678889999999999999999864
Q ss_pred --hcccCchhHHHHHHHHHHHHHHH----hhhhhhhhhhhhhhh-hccCCCcCC
Q 004297 696 --LSWRDPRATALFVIFCLIAAIVL----YVTPFQVVALLTGFY-VLRHPRFRH 742 (763)
Q Consensus 696 --~~w~~p~~t~~~~~~l~~~~~~l----~~vP~r~i~l~~g~~-~~~~p~~r~ 742 (763)
++|+++..|.+++++|+++.+.+ +++|+|++++++|.. .+.||..+.
T Consensus 141 ~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 141 PYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 57999999999888887777654 468999999999944 688998763
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.36 E-value=3e-12 Score=107.82 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|+|+|++|++|...+..+.+||||++++++ ..++|+++.++.||.|||+|.|.+.......|.|+|||.+.. ++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999988 569999999999999999999998655666799999999998 6999
Q ss_pred eEEEE
Q 004297 116 MGRVL 120 (763)
Q Consensus 116 lG~~~ 120 (763)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 203
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.36 E-value=1.1e-11 Score=133.24 Aligned_cols=242 Identities=20% Similarity=0.227 Sum_probs=160.1
Q ss_pred EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC----CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004297 232 QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP----NKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307 (763)
Q Consensus 232 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (763)
+..+|..+.+ .+||.|.+.|...+.....+.+++.++|.+.. ...+++|++...++++..... ...-..++
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 4468888887 99999999999999888899999999997653 467899999999998874311 11111121
Q ss_pred cccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCC
Q 004297 308 KHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTD 387 (763)
Q Consensus 308 ~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~D 387 (763)
.. .....|.|.+.+.- .. ....+.+ -..+|.+|.+. |..+++|
T Consensus 116 ~~---------~~~~~g~iti~aee--~~----------------------~~~~~~~-~~~~~~~ld~k---d~f~ksd 158 (529)
T KOG1327|consen 116 PG---------KNAGSGTITISAEE--DE----------------------SDNDVVQ-FSFRAKNLDPK---DFFSKSD 158 (529)
T ss_pred cC---------ccCCcccEEEEeec--cc----------------------ccCceee-eeeeeeecCcc---cccccCC
Confidence 11 11224555444321 10 0001222 34558889765 7889999
Q ss_pred cEEEEE--ECC-EE---EeeeeecCCCCCccccEEEEEee-----CCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEE
Q 004297 388 AYCVAK--YGQ-KW---VRTRTIIDSPTPKWNEQYTWEVF-----DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRI 456 (763)
Q Consensus 388 pyv~v~--~~~-~~---~~T~~~~~t~~P~wne~~~~~v~-----~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i 456 (763)
||..+. ++. .+ ++|.+++++++|.|.+ |.++.. ++...+.+.+||++..+ ++++||++..
T Consensus 159 ~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~--------~~~~ig~~~t 229 (529)
T KOG1327|consen 159 PYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG--------KHDLIGKFQT 229 (529)
T ss_pred cceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC--------CcCceeEecc
Confidence 999883 323 22 7999999999999984 443333 45678999999999865 7899999999
Q ss_pred ecccccCCCeEeeeEeeeeeCCCCcc----cceEEEEEEEEeecc------------------hhHHHhhcCCCCCccc-
Q 004297 457 RLSTLETDRVYTHSYPLLVLYPNGVK----KMGEIHLAVRFTCSS------------------LLNMMHMYSQPLLPKM- 513 (763)
Q Consensus 457 ~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l~~~~~~~~------------------~~~~~~~~~~p~~p~~- 513 (763)
++.++.... ....+++.+...+..+ ..|.+.+. .|+... ..++.++++.|..|.|
T Consensus 230 t~~~~~~~~-~~~~~~~~~~~~~~~~k~~k~~g~~~l~-~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSL 307 (529)
T KOG1327|consen 230 TLSELQEPG-SPNQIMLINPKKKAKKKSYKNSGQLILD-RFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSL 307 (529)
T ss_pred cHHHhcccC-CcccccccChhhhhhhhcccccceEEeh-heeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcc
Confidence 999996411 1223444332221111 13554432 222221 3344588999999999
Q ss_pred cccCCCChhHHHH
Q 004297 514 HYLHPLTVSQLDS 526 (763)
Q Consensus 514 ~~~~p~~~~q~~~ 526 (763)
||++|..+++|+.
T Consensus 308 Hyi~p~~~N~Y~~ 320 (529)
T KOG1327|consen 308 HYIDPHQPNPYEQ 320 (529)
T ss_pred eecCCCCCCHHHH
Confidence 9999999999985
No 204
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.35 E-value=6.1e-13 Score=148.70 Aligned_cols=90 Identities=24% Similarity=0.405 Sum_probs=80.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE--EeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCC
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~ 436 (763)
-.-.++|+|.+|.+|.+. |++|.+|||+++.+|++. -+++.+.+|+||+|++.|++.+..| ...++++|||+|.
T Consensus 611 i~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred ceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 345788999999999987 888999999999999988 4677788999999999999999987 6689999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEeccc
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
.+ +|+.||...|+|..
T Consensus 688 ~~--------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EA--------QDEKIGETTIDLEN 703 (1105)
T ss_pred cc--------ccchhhceehhhhh
Confidence 76 89999999999985
No 205
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.7e-12 Score=136.26 Aligned_cols=120 Identities=31% Similarity=0.576 Sum_probs=103.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-------
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (763)
.++++|+.|.+|.+.|.+|++||||.+.++..+.+|+++.+.+||+|||.|.|...+ ..+.+.+.|||.|..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999876 478999999998761
Q ss_pred -----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEcccCC
Q 004297 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQAD 166 (763)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~~d 166 (763)
+|||+|+..|.+..|... .+.||.|+.+..+ .+.|.|.+.+.+...+.
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 789999999999988754 5789999987643 46788888776654433
No 206
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.29 E-value=1.3e-11 Score=103.79 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=75.0
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCc
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDE 278 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~ 278 (763)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.+ +.+|.|+|.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 7799999887 899999999999987777778999999999998899
Q ss_pred eeEEEE
Q 004297 279 VLGKCM 284 (763)
Q Consensus 279 ~iG~~~ 284 (763)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 207
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.23 E-value=6.1e-11 Score=106.87 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=77.9
Q ss_pred eEEEEEEEccCCCCCccCCCCC--CCCcEEEEEECC---EEEeeeeecCCCC--CccccEEEEEeeCC------------
Q 004297 363 VLELGILNAQGLMPMKTKDGRG--TTDAYCVAKYGQ---KWVRTRTIIDSPT--PKWNEQYTWEVFDP------------ 423 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g--~~Dpyv~v~~~~---~~~~T~~~~~t~~--P~wne~~~~~v~~~------------ 423 (763)
.|+|.|.+|+|++..+. +..| .+||||++.+.+ ...+|.++++++| |+||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 37899999999776433 2234 599999998854 5689999999999 99999999887641
Q ss_pred ------------CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCC
Q 004297 424 ------------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 424 ------------~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
...|.|+|||+|.++ +|++||.+.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s--------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS--------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC--------CCCcceEEEEEhhhccccc
Confidence 357999999999987 8999999999999987664
No 208
>PLN02270 phospholipase D alpha
Probab=99.21 E-value=1.1e-10 Score=131.99 Aligned_cols=127 Identities=19% Similarity=0.261 Sum_probs=106.5
Q ss_pred ceEEEEEEEccCCCCCcc---------------CCCCCCCCcEEEEEECCEE-EeeeeecCC-CCCccccEEEEEeeCCC
Q 004297 362 GVLELGILNAQGLMPMKT---------------KDGRGTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPC 424 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~---------------~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~~~v~~~~ 424 (763)
|.|.++|++|++|++++. ..+.+.+||||.|.+++.+ .||+++.+. .||+|||.|.++|..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999986310 1224678999999998876 699999884 69999999999999999
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeecc
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 497 (763)
..++|.|-|.|.++ ..+||++.||+.+|..|..+.+|+++.+...+..+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g---------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG---------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC---------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999885 46999999999999999999999999876544333334899999998753
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.20 E-value=9.7e-11 Score=101.51 Aligned_cols=99 Identities=27% Similarity=0.506 Sum_probs=85.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~~~~~ 441 (763)
|.|.|++|++|... ...+..||||++.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999864 3346799999999988 88999999999999999999999998 6788999999988754
Q ss_pred CCCCCCCCccEEEEEeccccc-CCCeEeeeEee
Q 004297 442 KAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPL 473 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~-~~~~~~~~~~L 473 (763)
.+.+||++.+++.++. .+.....|++|
T Consensus 75 -----~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -----KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -----CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6789999999999998 66666777764
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=3.4e-10 Score=98.07 Aligned_cols=99 Identities=40% Similarity=0.655 Sum_probs=84.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
|.|+|++|++|......+.++|||.+.+.+ ...+|+++.++.||.|||.|.|.+.......+.|+||+.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998766677899999999998 888999999999999999999999764578899999999987 689999
Q ss_pred EEEEEccccC-CCCCCCCCCcCeEEEe
Q 004297 118 RVLFDLNEIP-KRVPPDSPLAPQWYRL 143 (763)
Q Consensus 118 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 143 (763)
.+.+++.++. .. ....+|++|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSG-----KEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcC-----CcCcceecC
Confidence 9999999988 22 224567654
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.15 E-value=2.8e-10 Score=98.75 Aligned_cols=92 Identities=30% Similarity=0.504 Sum_probs=79.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE---EEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~---~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~ 438 (763)
.+.|.|++|+||... ...+..+|||++.+++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 1 ~l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 367899999999865 22357899999999765 79999999999999999999999987 889999999988654
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCC
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
.+.++|.+.+++.++..+.
T Consensus 78 --------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 --------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred --------CCceeEEEEEEHHHcccCc
Confidence 6889999999999987665
No 212
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=4.8e-10 Score=97.29 Aligned_cols=91 Identities=36% Similarity=0.632 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY---KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|+|++|++|......+..+|||++++.+. ..+|+.+.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999988776578899999999875 78999999999999999999999775578999999999887 6999
Q ss_pred eEEEEEEccccCCCC
Q 004297 116 MGRVLFDLNEIPKRV 130 (763)
Q Consensus 116 lG~~~i~l~~l~~~~ 130 (763)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987653
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=99.07 E-value=1.5e-09 Score=118.17 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 38 QYLYVRVVKAKDLPPK-----DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~-----~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
..|.|+|+.|++++.. +.....||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987511 2234679999999976 35678877889999999999999987777889999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEE
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (763)
+|.. +++|+|++.+++..|..+- ++++|.+..|... ...|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 8999999999999998763 5679998887653 3455555543
No 214
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.05 E-value=1.2e-09 Score=98.54 Aligned_cols=91 Identities=30% Similarity=0.397 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeeeeCCCCC--CeeccEEEEEecC---------------
Q 004297 40 LYVRVVKAKDLPPKD--VTG--SCDPYVEVKMGN---YKGTTRHFEKKTN--PEWNQVFAFSKDR--------------- 95 (763)
Q Consensus 40 L~v~v~~a~~L~~~~--~~~--~~dPyv~v~~~~---~~~kT~~~~~t~n--P~Wne~f~f~v~~--------------- 95 (763)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+.++++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966443 355 499999999986 4689999999999 9999999988643
Q ss_pred --------CCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCC
Q 004297 96 --------IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRV 130 (763)
Q Consensus 96 --------~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~ 130 (763)
.....|.+.|||.|.+ +|+++|++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999998 8999999999999888653
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=99.03 E-value=2.9e-09 Score=115.95 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=84.4
Q ss_pred cceEEEEEEEccCCCCC--ccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCCC-cEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPM--KTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~--~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~V~ 432 (763)
...|.|+|+.|++++.. ++.+.....||||+|.+.| ...+|.+..++.||+|||.|.|++..|. ..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 36899999999998621 1112235689999998854 3467877777999999999999999874 57999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeC
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY 477 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~ 477 (763)
|+|..+ +|+++|+..+|++.|..|- ++.+|.+..
T Consensus 488 D~D~~~--------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 488 DYEVST--------ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred ecCCCC--------CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999765 7899999999999999984 677886544
No 216
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.01 E-value=1.4e-09 Score=114.63 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=101.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCcccc-EEEEEeeCC---CcEEEEEEEeCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNE-QYTWEVFDP---CTVITIGVFDNCHL 437 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne-~~~~~v~~~---~~~l~i~V~d~~~~ 437 (763)
|.|.|+|..|++|+.||++ ....|.||.+++++..++|.+-.+++||.||. -|.|+|.|. ...|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999999654 35689999999999999999999999999995 599999874 56899999999998
Q ss_pred CCCCCCCCCCCCccEEEEEeccccc----------CCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLE----------TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+ .++-||+|.|++..|. .|..+.+|+|+.+.- -| -+|+|.+-+++.
T Consensus 81 s--------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S--------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c--------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 7 7889999999999872 356789999997632 22 358998877764
No 217
>PLN02270 phospholipase D alpha
Probab=98.99 E-value=4.1e-09 Score=119.44 Aligned_cols=122 Identities=19% Similarity=0.345 Sum_probs=101.8
Q ss_pred eeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeeeeeeCCC-CCCeeccEEEEEecCC
Q 004297 37 MQYLYVRVVKAKDLPPKD------------------VTGSCDPYVEVKMGNY-KGTTRHFEKK-TNPEWNQVFAFSKDRI 96 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~------------------~~~~~dPyv~v~~~~~-~~kT~~~~~t-~nP~Wne~f~f~v~~~ 96 (763)
.|.|.++|.+|++|+..+ ..+.+||||.|.+++. ..||+++.+. .||.|||+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 378999999999998531 1357899999999985 6799999874 6999999999998764
Q ss_pred CCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccc--eEEEEEEEEccc
Q 004297 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR--GELMLAVWMGTQ 164 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~ 164 (763)
...+.|.|.|.+.++..+||.+.+++.++..+.. ...||++.+..|+... ..|+++++|.+.
T Consensus 87 -~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 -ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred -cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4789999999999988899999999999987643 6789999998876433 488889888764
No 218
>PLN02952 phosphoinositide phospholipase C
Probab=98.98 E-value=5.1e-09 Score=116.69 Aligned_cols=116 Identities=25% Similarity=0.402 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~------~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999987532 1123459999999965 5679999999999999999999987766778999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEE
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (763)
|+|.. +++++|++.+++..|..+. +|++|.+..|... ...|.+.+++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987 8999999999999998762 5899998877642 2344444443
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.96 E-value=7.5e-09 Score=115.35 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=91.9
Q ss_pred cceEEEEEEEccCCCCCc---cCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMK---TKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~---~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V 431 (763)
...|.|.|+.|++|+.-. ..+.....||||+|.+-| ...+|+++.++.||+|||.|.|++..| -..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 368999999999985311 112234469999998733 457999999999999999999999876 45799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+|+|..+ .|+++|+..||+..|..|- +|++|.+.. |. ..+...|-++|.
T Consensus 549 ~D~D~~~--------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE--------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC--------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998765 7899999999999999995 589996533 32 234555555553
No 220
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.96 E-value=2.5e-09 Score=90.02 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=73.2
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCee
Q 004297 40 LYVRVVKAKDLPPKD---VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~---~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~ 115 (763)
|.|+|..|+|+...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+.+.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 579999999998776 5788999999999995 889987 4899999999999963 678999999997766778
Q ss_pred eEEEEEEccccCCC
Q 004297 116 MGRVLFDLNEIPKR 129 (763)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (763)
+|..-+.+++|...
T Consensus 76 i~llW~~~sdi~Ee 89 (109)
T cd08689 76 VGLLWLRLSDIAEE 89 (109)
T ss_pred eeeehhhHHHHHHH
Confidence 89999988888743
No 221
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.93 E-value=2.2e-10 Score=123.89 Aligned_cols=125 Identities=32% Similarity=0.574 Sum_probs=105.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeeeCCCCC
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------Y------------------KGTTRHFEKKTN 82 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~------------------~~kT~~~~~t~n 82 (763)
..|.+.|.|.+.+|++|.++|.+|.+|||+...+.. + .+-|.+.++|+|
T Consensus 110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLn 189 (1103)
T KOG1328|consen 110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLN 189 (1103)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCC
Confidence 356677889999999999999999999999887722 0 123778899999
Q ss_pred CeeccEEEEEecCCCCceEEEEEEeCCC---------------------------------C----CCeeeEEEEEEccc
Q 004297 83 PEWNQVFAFSKDRIQSSVLEVTVKDKDF---------------------------------V----KDDFMGRVLFDLNE 125 (763)
Q Consensus 83 P~Wne~f~f~v~~~~~~~l~i~V~d~~~---------------------------------~----~d~~lG~~~i~l~~ 125 (763)
|.|+|.|.|.+++.+.+.+-+.+||+|. . .|||+|++.|+|++
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999999999999999999843 1 48999999999999
Q ss_pred cCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEccc
Q 004297 126 IPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQ 164 (763)
Q Consensus 126 l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~ 164 (763)
+... ...+||+|+.++.+ +++|.+++.+|+.+.
T Consensus 270 iP~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 270 IPPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred CCcc------hHHHHhccCcccccccccceEEEEEEEeee
Confidence 9854 37899999998754 589999999999763
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.89 E-value=1.2e-08 Score=113.55 Aligned_cols=116 Identities=26% Similarity=0.334 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~------~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
..|.|+|+.|.+++.. +.....||||+|.+-+ .+.+|++..++.||+|||+|.|.+..++-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987421 2234579999999965 3578998899999999999999987777789999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEE
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (763)
|+|.. +|+|+|+..+++..|..+- +.++|.+..|... ...|.+.+++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99987 8999999999999998763 4568998887652 3466666654
No 223
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.85 E-value=9.9e-09 Score=86.45 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=71.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|.|.|..|+|+....+....+.+||||.+++++. .+||++ +.||.|||.|.|+| +...++.+.|||...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~~----- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD----- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCCC-----
Confidence 5789999999987643224677999999999987 799998 48999999999999 5688999999997431
Q ss_pred CCCCCCCccEEEEEeccccc
Q 004297 443 AGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~ 462 (763)
..-.||-.-|.+++|.
T Consensus 72 ----~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 ----QPVPVGLLWLRLSDIA 87 (109)
T ss_pred ----eecceeeehhhHHHHH
Confidence 5678999999999984
No 224
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=98.84 E-value=9.8e-08 Score=105.18 Aligned_cols=208 Identities=18% Similarity=0.324 Sum_probs=121.2
Q ss_pred CchHHHHHHHhcCCCchhHHHH-HHHHHHHHHHHhhhhcccCCchhhHHHHHHHHHHHHcCchhHHHHHHHHHHHHh---
Q 004297 545 PLRKEVVEYMLDVGSHMWSMRR-ILSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTVFLYLFLIGV--- 620 (763)
Q Consensus 545 ~l~~~v~~~~l~~~~n~~r~~~-~~~~~~~~~~~l~~~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~--- 620 (763)
.++.+-++ +|+.|+.. ++-.+..+.+.|.++.+|++|++|.+++++|++ +|+.+|++|+++..++.+.+
T Consensus 87 ~FspdkLR------a~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~ 159 (642)
T PF11696_consen 87 EFSPDKLR------ANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPP 159 (642)
T ss_pred cCChHHHH------HHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcc
Confidence 34555554 67777777 677888888999999999999999999999988 88889999888866544444
Q ss_pred -hccccCCCCCCCCCC-----------------CcCCC------CCC--------------------------CCCCCCc
Q 004297 621 -WYYRWRPRHPPHMDT-----------------RLSHA------DSA--------------------------HPDELDE 650 (763)
Q Consensus 621 -~~y~~~~~~~~~~~~-----------------~~s~~------~~~--------------------------~~~~~d~ 650 (763)
+.+.+.+..++..+. .+.++ |.+ .+++ ++
T Consensus 160 ~r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~-~~ 238 (642)
T PF11696_consen 160 ARSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDD-DP 238 (642)
T ss_pred cccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc-CC
Confidence 334443322211111 11111 100 0111 11
Q ss_pred cCCCC--CC------------------CCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHH----
Q 004297 651 EFDTF--PT------------------SRPSDIVRMR-YDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATA---- 705 (763)
Q Consensus 651 e~~~~--~~------------------~~~~~~~~~~-~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~---- 705 (763)
+.+.. ++ .......++- -.++-..+..++..++++++.-||+-|.|+=+-|+-..
T Consensus 239 ~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~Rl 318 (642)
T PF11696_consen 239 EEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRL 318 (642)
T ss_pred ccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHH
Confidence 10110 00 0001111211 22345567889999999999999999999887777431
Q ss_pred HHHHHHHHHHHHHhhhh----hhhhhhhhhhhhccCCCcC-------CCCCCch------hhhhhcCCCCcc
Q 004297 706 LFVIFCLIAAIVLYVTP----FQVVALLTGFYVLRHPRFR-------HKLPSVP------LNFFRRLPARTD 760 (763)
Q Consensus 706 ~~~~~l~~~~~~l~~vP----~r~i~l~~g~~~~~~p~~r-------~~~p~~~------~~~~~r~ps~~~ 760 (763)
.+..+++-++++.+|++ .|.+-++.|+-|+.-|-++ .++|+.- ..+|+.||+|+-
T Consensus 319 RLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQ 390 (642)
T PF11696_consen 319 RLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQ 390 (642)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHH
Confidence 11222222222333333 5555566676677766433 4455532 346899998863
No 225
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.83 E-value=3e-08 Score=110.35 Aligned_cols=121 Identities=16% Similarity=0.228 Sum_probs=89.9
Q ss_pred cceEEEEEEEccCCCCCcc---CCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~---~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V 431 (763)
...|.|+|+.+++++.... .+.....||||+|.+-| ...+|+++.++.||+|||.|.|++.-| -..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999999753211 12334579999998733 347899888999999999999999987 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|+|..+ +|+++|+..||+..|..|- +..+|.+..+... ..-++.+.+.|
T Consensus 548 ~d~d~~~--------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l-~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE--------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKY-SSTRLLMRFEF 597 (598)
T ss_pred EECCCCC--------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCC-CCCeeEEEEEe
Confidence 9998765 7899999999999999984 4678865432222 12345554443
No 226
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.83 E-value=3.7e-08 Score=109.53 Aligned_cols=115 Identities=25% Similarity=0.386 Sum_probs=91.5
Q ss_pred eEEEEEEEEeecCC--C----CCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLP--P----KDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~--~----~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
..|.|+|+.|.++. . .+.....||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998753 1 12234679999999965 4678999999899999999999987777789999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccc-eEEEEEEE
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR-GELMLAVW 160 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~ 160 (763)
|+|.. +++|+|++.+++..|..+- +.++|.+..|.... ..+.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEE
Confidence 99886 8999999999999998763 45689888876533 45555544
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.82 E-value=5.2e-08 Score=108.36 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=89.6
Q ss_pred cceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~---~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V 431 (763)
...|.|+|+.|++++. ....+.....||||+|.+.| ...+|+++.++.||.|||.|.|.+..| -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999998531 11112344689999998843 357999999999999999999999887 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|+|..+ .|+++|+..||+..|..|- +..+|.+..+... ..-++.+.+.|
T Consensus 531 ~d~D~~~--------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE--------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEF 580 (581)
T ss_pred EECCCCC--------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEe
Confidence 9998765 7889999999999999984 4678865432222 22345554443
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.82 E-value=5e-08 Score=108.20 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=92.6
Q ss_pred cceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCcc-ccEEEEEeeCC-CcEEEEE
Q 004297 361 IGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKW-NEQYTWEVFDP-CTVITIG 430 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~---~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~w-ne~~~~~v~~~-~~~l~i~ 430 (763)
...|.|+|+.|++|+. .+..+.....||||+|.+.| ..++|+++.++.||.| ||.|.|.+..| -..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999999731 11112334589999998733 3579999988999999 99999999887 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|+|+|..+ .|+++|+..|++..|..|- +..+|.+..+... ...+|.+.+.+..
T Consensus 510 V~D~d~~~--------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDT--------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCC--------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 99998765 7899999999999998884 4678855432222 2356777777654
No 229
>PLN02228 Phosphoinositide phospholipase C
Probab=98.80 E-value=4.5e-08 Score=108.56 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=95.2
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCee-ccEEEEEecCCCCceEEEEE
Q 004297 38 QYLYVRVVKAKDLPP---K---DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVTV 105 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~---~---~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~l~i~V 105 (763)
..|.|+|+.|++|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 1 1233579999999965 3578999988899999 99999998777678999999
Q ss_pred EeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEEcc
Q 004297 106 KDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMGT 163 (763)
Q Consensus 106 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~~ 163 (763)
+|+|.. +++++|++.+++..|..+ -+.++|.+..|+.. .+.|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 999876 899999999999999865 24679999888764 456888777653
No 230
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.78 E-value=4.5e-08 Score=108.68 Aligned_cols=118 Identities=20% Similarity=0.339 Sum_probs=90.9
Q ss_pred eEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCE-----EEeeeeec-CCCCCccccEEEEEeeCC-CcEEEEEEEeC
Q 004297 363 VLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQK-----WVRTRTII-DSPTPKWNEQYTWEVFDP-CTVITIGVFDN 434 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~-~~g~~Dpyv~v~~~~~-----~~~T~~~~-~t~~P~wne~~~~~v~~~-~~~l~i~V~d~ 434 (763)
.|.|.|+.++|+.+..... .+..+||||.|++.|- ..+|+++. ++-||.|+|.|+|++..| -.-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887642222 2356999999998553 37999555 688999999999999988 46789999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEE
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 493 (763)
|..+ +|+|+|+..||+..|.+|- +-.||.+.. |.. ..-+|.+.+.+
T Consensus 697 d~~~--------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~--G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG--------KDDFIGQTTLPVSELRQGY---RHVPLLSRE--GEALSSASLFVRIAI 743 (746)
T ss_pred CCCC--------cccccceeeccHHHhhCce---eeeeecCCC--CccccceeEEEEEEE
Confidence 9876 8999999999999999984 457776543 332 23456665555
No 231
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.74 E-value=5e-08 Score=108.34 Aligned_cols=117 Identities=21% Similarity=0.417 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCC-CCC---CCCCCcEEEEEECC-----eeeeeeee-CCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 38 QYLYVRVVKAKDLPP-KDV---TGSCDPYVEVKMGN-----YKGTTRHF-EKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~-~~~---~~~~dPyv~v~~~~-----~~~kT~~~-~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
.+|.|+|+.|.++.. .+. ...+||||.|++-| ...+|+++ .++-||.|+|+|.|.+..++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 379999999996643 222 35689999999976 36789955 778899999999999988778899999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEc
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (763)
+|.. +|+|+|+.++++..|..+- +-++|.+..|+. ....|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9998 8999999999999998763 345888887764 345666666553
No 232
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.70 E-value=3.4e-08 Score=104.47 Aligned_cols=124 Identities=28% Similarity=0.466 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeeeeeeeeCCCCCCeec-cEEEEEec--CCCCceEEEEEEeCCCC-C
Q 004297 38 QYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGNYKGTTRHFEKKTNPEWN-QVFAFSKD--RIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wn-e~f~f~v~--~~~~~~l~i~V~d~~~~-~ 112 (763)
|.|.|+|+.|++|+.+|.. ...|.||++++++..+||.+..+++||.|| +.|.|.++ ++++..|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 5788999999999999864 467999999999999999999999999999 55888884 56788999999999998 8
Q ss_pred CeeeEEEEEEccccCCCC-----CCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRV-----PPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~-----~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
+|-||.+.|++..|.... ...+.+...||++.+.-. ..+|+|.+-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEEe
Confidence 999999999999887542 122456678999988642 2578988766543
No 233
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.69 E-value=1.8e-08 Score=87.23 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=82.8
Q ss_pred EEEEEEEccCCCCCccC------C----CCCCCCcEEEEEE----CCEEEeeeeecCCCCCccccEEEEEee--------
Q 004297 364 LELGILNAQGLMPMKTK------D----GRGTTDAYCVAKY----GQKWVRTRTIIDSPTPKWNEQYTWEVF-------- 421 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~------~----~~g~~Dpyv~v~~----~~~~~~T~~~~~t~~P~wne~~~~~v~-------- 421 (763)
|.|.|++|.||+++-++ + ..-..++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999863211 1 1223689999975 567899999999999999999999876
Q ss_pred CC--------CcEEEEEEEeCCCCCCCCC--CCCCCCCccEEEEEecccccCC-CeEeeeEee
Q 004297 422 DP--------CTVITIGVFDNCHLHGGDK--AGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (763)
Q Consensus 422 ~~--------~~~l~i~V~d~~~~~~~~~--~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L 473 (763)
.. ..++.++||+.+..+.++. ....+|-.||.|.||+.+|... ..+++|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 3579999999887554431 1234788999999999998544 357899985
No 234
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.65 E-value=3.5e-07 Score=98.90 Aligned_cols=179 Identities=19% Similarity=0.215 Sum_probs=127.6
Q ss_pred eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
..+|.++.+.+||.|-+.|.....-...+.+++.++|.+.. ..+|+|++...+..+........ .|..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~-------~l~~ 114 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG-------PLLL 114 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh-------hhhc
Confidence 45899999999999999998876544578899999997763 67999999999999886532111 1111
Q ss_pred CCCC-ccceEEEEEEEEcccCCCCCCccccccccccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcE
Q 004297 146 RKGD-KVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVY 224 (763)
Q Consensus 146 ~~~~-~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpy 224 (763)
+.++ ...|+|.+.+.-.... .....-..+|++|..++..+++|||
T Consensus 115 ~~~~~~~~g~iti~aee~~~~----------------------------------~~~~~~~~~~~~ld~kd~f~ksd~~ 160 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEEDESD----------------------------------NDVVQFSFRAKNLDPKDFFSKSDPY 160 (529)
T ss_pred ccCccCCcccEEEEeeccccc----------------------------------CceeeeeeeeeecCcccccccCCcc
Confidence 1111 1246776654211000 0122233458999999999999999
Q ss_pred EEEEEC--C----EEEeeecccCCCCCccccceEEEEee----CCCCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q 004297 225 VKAQLG--N----QALRTRVSASRTINPMWNEDLMFVAA----EPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK 292 (763)
Q Consensus 225 v~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~~----~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 292 (763)
..+.-- . ..++|.++++ ++||.|.+. ..... ......+.+.+||++..+++++||++..++.++..
T Consensus 161 l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 161 LEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred eEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 988753 2 4688999887 999999863 33322 12246788999999999999999999999998863
No 235
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.61 E-value=1.9e-08 Score=109.27 Aligned_cols=100 Identities=30% Similarity=0.554 Sum_probs=85.8
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeeCCCCCCeeccEEEEEecCC---
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRI--- 96 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~--- 96 (763)
+...|.... ..|.|.|+.|+++.+-|.+|.+||||+|.+++. .++|+++.+|+||+|+|+|+|.+...
T Consensus 938 vr~~y~~n~--q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 938 VRAYYNGNA--QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEEeeccc--cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 333444444 489999999999999999999999999999982 56899999999999999999998432
Q ss_pred -CCceEEEEEEeCCCC-CCeeeEEEEEEccccCC
Q 004297 97 -QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPK 128 (763)
Q Consensus 97 -~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 128 (763)
....|-|+|.|+|.. .+||-|++.+.|.++..
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 257899999999998 99999999999998874
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.61 E-value=5.7e-08 Score=110.78 Aligned_cols=123 Identities=28% Similarity=0.417 Sum_probs=99.9
Q ss_pred CCCCCCcccCc-eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccE
Q 004297 15 PHLGGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQV 88 (763)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~ 88 (763)
|+...|.+++. +++++|. .+.|+|.|.-+++|+--+.+..+||||+.++.+ .+.||+++++|.||.|||.
T Consensus 1504 ps~~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1504 PSRNPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCCCccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh
Confidence 44455666644 7777777 469999999999996555567889999999976 3678999999999999999
Q ss_pred EEEE---ecCCCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 89 FAFS---KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 89 f~f~---v~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
..+. .+.+....|.+.||..+.. .+.++|.+.++|.++....+ ...||.|...
T Consensus 1580 LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1580 LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 8876 3445568899999999988 89999999999999887643 4589998754
No 237
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.53 E-value=3.6e-07 Score=100.61 Aligned_cols=99 Identities=18% Similarity=0.312 Sum_probs=81.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEE-eeeeecCCCCCccc-cEEEEEeeCC-CcEEEEEEEe
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWV-RTRTIIDSPTPKWN-EQYTWEVFDP-CTVITIGVFD 433 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~-~T~~~~~t~~P~wn-e~~~~~v~~~-~~~l~i~V~d 433 (763)
-.|.|.|+.|+.|+. .++|-.-|||.|++-| ..+ +|.++.+++||+|| |.|+|++.+| -.-|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999984 4556677999997733 334 44455679999999 9999999998 5689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+|.++ ...|||++..|+..+..|- +..||.+
T Consensus 1141 eDmfs--------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS--------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC--------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99997 4569999999999998883 5677755
No 238
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.53 E-value=3.1e-07 Score=101.15 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=89.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eeeeeeCCCCCCeec-cEEEEEecCCCCceEEEEEEeCCCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YK-GTTRHFEKKTNPEWN-QVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~-~kT~~~~~t~nP~Wn-e~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
.|.|.|+.|+.|+... .+...|||+|.+-| .+ ++|.++.+++||+|| |+|.|.+..++-..|+|.|+|.|.+
T Consensus 1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 6889999999998543 46678999999966 24 455566899999999 9999999999899999999999999
Q ss_pred -CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEc
Q 004297 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (763)
...|||++++++..+..+- +-.+|.+.-.++ ....+++.+...
T Consensus 1145 s~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred CCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEec
Confidence 5579999999999998663 234777654332 234555555444
No 239
>PLN02352 phospholipase D epsilon
Probab=98.51 E-value=7e-07 Score=101.45 Aligned_cols=119 Identities=22% Similarity=0.293 Sum_probs=90.9
Q ss_pred ceEEEEEEEccCCCCC-c--cCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCC-cEEEEEEEeCCC
Q 004297 362 GVLELGILNAQGLMPM-K--TKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCH 436 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~-~--~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~V~d~~~ 436 (763)
|.|.++|++|+-+... . ..-+.+ .||||.|.+++.+ .|| .+..||+|||.|.++|..+. ..++|.|-|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 8899999999733211 0 000122 3999999998876 588 55669999999999999876 7899999982
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCCe-EeeeEeeeeeCCCCcccceEEEEEEEEeecch
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRV-YTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~~ 498 (763)
-.+||++.||+.+|..|.. +++|+++.+...+.. +..+|+++++|.+...
T Consensus 84 -----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 84 -----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAEL 134 (758)
T ss_pred -----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhh
Confidence 3599999999999999865 899999987554333 2258999999987643
No 240
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.44 E-value=0.00013 Score=76.48 Aligned_cols=243 Identities=19% Similarity=0.252 Sum_probs=158.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEec-------CCCCceEEEEEEeCCCC-
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-------RIQSSVLEVTVKDKDFV- 111 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-------~~~~~~l~i~V~d~~~~- 111 (763)
+.|+|++|++++... ...-.+..+++++...|..+..+..|.||....|.++ ..+...|++++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 3466899999999999999999999999999999874 33567899999999833
Q ss_pred -CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC--CccceEEEEEEEEcccCCCCCC--c--ccccccccccc--
Q 004297 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFP--E--AWHSDAATVTG-- 182 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~--~--~~~~~~~~~~~-- 182 (763)
+.+.+|.+.++|.........+......||+|...++ ++.+-+|.+.+.+......... . .+.. .+....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~-~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKP-APPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccC-CCcccCCC
Confidence 8899999999999882111112345789999998743 2346788888877654331000 0 0000 000000
Q ss_pred cc---cccc------cc-----ccccc---cCceeEEEEEEEEccccCCCCC----C--CCCCcEEEEEECCEEEeeecc
Q 004297 183 IE---GLAN------IR-----SKVYL---SPKLWYLRVNVIEAQDLQPTDK----G--RFPEVYVKAQLGNQALRTRVS 239 (763)
Q Consensus 183 ~~---~~~~------~~-----~~~~~---~p~~g~L~V~i~~a~~L~~~~~----~--~~~dpyv~v~l~~~~~kT~~~ 239 (763)
.. .... .. -++.. -.....|.|++..|++|...-. . +....|....+-+....|..-
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 00 0000 00 00111 1235689999999999976621 1 234667777777776666665
Q ss_pred cCCCCCcccc-ceEE-EEeeCC---------CCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q 004297 240 ASRTINPMWN-EDLM-FVAAEP---------FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK 292 (763)
Q Consensus 240 ~~~t~nP~wn-e~f~-f~~~~~---------~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 292 (763)
.. ..+|.|. |.-. +.+... ....|.|.++. .+..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 54 7777664 2223 544321 23467777766 46789999999999874
No 241
>PLN02352 phospholipase D epsilon
Probab=98.34 E-value=3.6e-06 Score=95.74 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 38 QYLYVRVVKAKDLPPK----DVT-GSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~----~~~-~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
|.|.++|.+|+-+... +.. ...||||.|.+++. ..|| .+..||.|||+|.+.+.......+.|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7899999999843221 111 12399999999984 5678 556699999999999976544679999998
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccce-EEEEEEEEcccC
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG-ELMLAVWMGTQA 165 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~~~~~~~~ 165 (763)
+..+||.+.+++.++..+. .....||++.+..|+...| .|+++++|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 4689999999999998763 2267899999988765455 888999887643
No 242
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.34 E-value=5.8e-07 Score=102.86 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=84.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEee---CC-CcEEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---DP-CTVITIGVF 432 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~---~~-~~~l~i~V~ 432 (763)
|.|.|.|..|+||+-. ..+..+||||+..+-. .+.||+++.+|.||.|||...+.-. .. ..+|.+.||
T Consensus 1524 ~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred ceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 8999999999999654 2345699999998833 2479999999999999998776522 12 478999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
..+.+. .+.++|.+.|+|.++.-.+...+||+|.
T Consensus 1601 s~~~~~--------en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1601 SNGGLL--------ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccccee--------eeeeeeeeecchhhcchhhhhcceeecc
Confidence 998775 7889999999999998777677999993
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.88 E-value=0.0023 Score=67.29 Aligned_cols=238 Identities=15% Similarity=0.214 Sum_probs=156.8
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeC-------CCCCeEEEEEEEcc-C
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE-------PFEEHLILTVEDRV-A 273 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~L~i~V~d~d-~ 273 (763)
+.|.|++|++.+... .-.-.|..+++++...|..+.. +..|.||....+.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998773 2467889999999999998877 9999999999998742 23558999999988 5
Q ss_pred CCCCceeEEEEEecccc-ccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCC---------Cc
Q 004297 274 PNKDEVLGKCMIPLQYV-DKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDE---------ST 343 (763)
Q Consensus 274 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~---------~~ 343 (763)
.+..+.||.+.++|..+ ...........+||+|-.... +-.+.+-++.+.+++.......+. .+
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~------~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS------KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc------ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 56788999999999988 111122346789999987521 112234567777776543321000 01
Q ss_pred ccCC-------CCCcch--hhh-------------ccCCcceEEEEEEEccCCCCCccC---CCCCCCCcEEEEEECCEE
Q 004297 344 HYSS-------DLRPTA--KQL-------------WKSSIGVLELGILNAQGLMPMKTK---DGRGTTDAYCVAKYGQKW 398 (763)
Q Consensus 344 ~~~~-------d~~~~~--~~~-------------~~~~~g~l~v~v~~a~~L~~~~~~---~~~g~~Dpyv~v~~~~~~ 398 (763)
...+ ...+.. ..+ .....-.|.|++..|+||..+-.. +..+.+..|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 1111 000100 000 012345788999999998765211 112335667777776667
Q ss_pred EeeeeecCCCCCccc-cEEE-EEeeC----------CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 399 VRTRTIIDSPTPKWN-EQYT-WEVFD----------PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 399 ~~T~~~~~t~~P~wn-e~~~-~~v~~----------~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
+.|..-+...+|.|- |... +.+.. ....|.|.++.. +..||.+.|++..+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-------------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-------------NQSLGSTSVPLQPLL 294 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-------------CcEEEEEEEEhhhcc
Confidence 888888888888774 3333 65552 134688888873 557999999999984
No 244
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.77 E-value=2.8e-05 Score=62.72 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=67.0
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEEE--C-CeeeeeeeeCCCCCCeeccEEEEEe--cCCCCceEEEEEEeCCCCCCe
Q 004297 41 YVRVVKAKDLPPKDVTG-SCDPYVEVKM--G-NYKGTTRHFEKKTNPEWNQVFAFSK--DRIQSSVLEVTVKDKDFVKDD 114 (763)
Q Consensus 41 ~v~v~~a~~L~~~~~~~-~~dPyv~v~~--~-~~~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~l~i~V~d~~~~~d~ 114 (763)
.|+|+.|++|......| .+.-|++=.+ . +..+||...++..||+|+|+|.|.+ ..+..-.|.|.|++.-. +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 58999999997654433 2333554333 2 2578999999999999999999987 45667889999999322 889
Q ss_pred eeEEEEEEccccCCC
Q 004297 115 FMGRVLFDLNEIPKR 129 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~ 129 (763)
.||.+++++.++-.+
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999988644
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.67 E-value=6.9e-05 Score=85.03 Aligned_cols=89 Identities=21% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEE-EECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVA-KYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v-~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~ 436 (763)
.-.|.+.+++++|+ | + ..|+|+.+ .+|.+.+||.+.++|+||+||+...|.|... ....++.|||.+.
T Consensus 51 ~~~~~~~~~~~~~~----~---~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----M---K---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----h---c---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 34589999999988 3 1 35888777 7788999999999999999999988888852 3346999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCC
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
++ +++++|.++++|.++...+
T Consensus 121 ~s--------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 121 LS--------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CC--------HHHhhhheeecHhhccHHH
Confidence 87 8999999999999886543
No 246
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.59 E-value=0.00018 Score=62.84 Aligned_cols=100 Identities=28% Similarity=0.375 Sum_probs=73.4
Q ss_pred EEEEEEccccCCCC-----------C--CCCCCcEEEEEEC----CEEEeeecccCCCCCccccceEEEEee--------
Q 004297 203 RVNVIEAQDLQPTD-----------K--GRFPEVYVKAQLG----NQALRTRVSASRTINPMWNEDLMFVAA-------- 257 (763)
Q Consensus 203 ~V~i~~a~~L~~~~-----------~--~~~~dpyv~v~l~----~~~~kT~~~~~~t~nP~wne~f~f~~~-------- 257 (763)
.|.|++|.+|.... . .-.-++||++.+. ++..+|+++.+ +-.|.|+..++|++.
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCCC
Confidence 46677777775321 1 0125899999964 47788999987 999999999999875
Q ss_pred C-------CCCCeEEEEEEEccC----------CCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004297 258 E-------PFEEHLILTVEDRVA----------PNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306 (763)
Q Consensus 258 ~-------~~~~~L~i~V~d~d~----------~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (763)
+ .+...+.++||+... ..+|-.+|.+.||+.+|... +.+...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~---rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK---RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc---ccCccccccC
Confidence 1 124489999998653 23456899999999999863 5668899975
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00014 Score=74.78 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=87.3
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-CCE----EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE-
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-GQK----WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF- 432 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-~~~----~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~- 432 (763)
...|.++|.|++|+||.... ..+..++|||+|.+ ++. ..+|+...+|++|-+.++..|.-.-+...|.+.||
T Consensus 266 d~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 45689999999999998742 22346999999966 433 36888889999998888888877777889999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCC-eEeeeEeeeeeC
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVLY 477 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~-~~~~~~~L~~~~ 477 (763)
|+.++. .+.|+|.++|-+.+|.-.. ....||+|....
T Consensus 344 dygRmd--------~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGRMD--------HKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccccc--------hHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 554543 7899999999999997665 789999996543
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.39 E-value=0.00012 Score=75.77 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=91.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeeCCCCCCeeccEEEEEecC---CC--------CceEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSKDR---IQ--------SSVLE 102 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~---~~--------~~~l~ 102 (763)
.|.+.|+++.+++........|-|+++.+- .++.+|.++++|.+|.|+|.|.+.+.. .+ .-.+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677889999988765544456789998873 267889999999999999999999854 11 24689
Q ss_pred EEEEeCCCC--CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 103 VTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 103 i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
|++|++..+ +|.++|.+.+.|.-|..... ....++|.+.. +.+.|.+.+++.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~DGR-K~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKDGR-KAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccc-----hhhceeccccc-cccCCeeEEEEEEe
Confidence 999999988 89999999999999886643 34556777632 23568888888765
No 249
>PLN02964 phosphatidylserine decarboxylase
Probab=97.35 E-value=0.0003 Score=79.98 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=75.1
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcE-EEEEECCEEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCC
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVY-VKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPN 275 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpy-v~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~ 275 (763)
+-.|++.+++++|+ ++. .|+| +.+.+|.+.+||.+.++ |.||+||+...|.+.........|.|||.++++
T Consensus 51 ~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 44578999999997 322 3776 57788999999999987 999999999999887766666799999999999
Q ss_pred CCceeEEEEEeccccccc
Q 004297 276 KDEVLGKCMIPLQYVDKR 293 (763)
Q Consensus 276 ~d~~iG~~~i~l~~l~~~ 293 (763)
.++++|.|++++.++..+
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999999887643
No 250
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.26 E-value=0.00037 Score=56.37 Aligned_cols=87 Identities=16% Similarity=0.385 Sum_probs=63.4
Q ss_pred EEEEEEccccCCCCC-CCCCCcEEEEEEC--C-EEEeeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccCCCC
Q 004297 203 RVNVIEAQDLQPTDK-GRFPEVYVKAQLG--N-QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVAPNK 276 (763)
Q Consensus 203 ~V~i~~a~~L~~~~~-~~~~dpyv~v~l~--~-~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~ 276 (763)
-|+++.++||.-... ...+.-|++--+. + -..||++.. +..||+|.|+|.|.+... .+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999864332 3345567765543 2 457777755 499999999999987543 34478888887 5678
Q ss_pred CceeEEEEEecccccc
Q 004297 277 DEVLGKCMIPLQYVDK 292 (763)
Q Consensus 277 d~~iG~~~i~l~~l~~ 292 (763)
.+.||.|.+.+.++..
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 8999999999998864
No 251
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.05 E-value=0.00047 Score=71.46 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=93.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---C--CEEEeeeeecCCCCCccccEEEEEeeC-C-----------
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIIDSPTPKWNEQYTWEVFD-P----------- 423 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~~~v~~-~----------- 423 (763)
...|++.|.++.+++.. .+..-.|-|+++++ + .+..+|.+++.|.+|.|+|.|.+.+.. +
T Consensus 366 d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 35778888889988653 22334788999966 2 245789999999999999999998875 2
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEEe
Q 004297 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (763)
Q Consensus 424 ~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 494 (763)
..-+.|++|+...+. .+|.++|.+.|.|..|++.-.....|+|.+ |+| ..|++++.+++.
T Consensus 443 r~g~kfeifhkggf~-------rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFN-------RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccc-------cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 235899999986553 279999999999999998877888899975 443 368999988873
No 252
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.00089 Score=68.99 Aligned_cols=112 Identities=24% Similarity=0.333 Sum_probs=89.1
Q ss_pred ecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVT 104 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~ 104 (763)
.++....|.|.|.|++|++|..... ...++|||+|++-+ .+.+|+...+|..|-+-+...|.-.. ....|.++
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEE
Confidence 3456778999999999999976532 34789999999965 36789999999999888888887654 57889999
Q ss_pred EEeC-CCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 105 VKDK-DFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 105 V~d~-~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
||.. .+. .+.|+|.+.+-+.+|.... ...-.||+|....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss 381 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS 381 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence 9974 444 7889999999999998763 2356899998764
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.66 E-value=0.023 Score=52.55 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=86.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcE--EEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--------------C
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAY--CVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------------C 424 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpy--v~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--------------~ 424 (763)
.-.|++.|.+++-...--. +..|..+.- +-+.+++++++|+.+.-+.+|.|+|.|-|++... +
T Consensus 8 ~~yL~l~vlgGkAFld~l~-~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQ-EPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhhh-ccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 3577888888775432000 111333444 4447799999999999999999999999988732 4
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCe--EeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRV--YTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~--~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+.+.+.|.-.|..+ ...++|.-.++...+..... ......|.+.........|.++++++..+
T Consensus 87 ~pihivli~~d~~~--------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 87 DPIHIVLIRTDPSG--------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CceEEEEEEecCCC--------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 57889888877654 45799999999999754332 24445565544433335799999998754
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.96 E-value=0.11 Score=48.83 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=73.6
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEec---CCCCceE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVL 101 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l 101 (763)
+|+++ .++|+|+++.++...+ .+|-||++.+ |++ ...|+.+.. .++.|||...|++. -+.+..|
T Consensus 4 wd~~~---~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL 76 (158)
T cd08398 4 WKINS---NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARL 76 (158)
T ss_pred eeCCC---CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheE
Confidence 45554 5889999999987643 4578888855 443 234555553 68999999999872 2347899
Q ss_pred EEEEEeCCCC-----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 102 EVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 102 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
.|.||+.... ....+|.+++.|-+... .| .+|...+.+|..+.
T Consensus 77 ~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~-------------~L-------r~G~~~L~lW~~~~ 124 (158)
T cd08398 77 CLSICSVKGRKGAKEEHCPLAWGNINLFDYTD-------------TL-------VSGKMALNLWPVPH 124 (158)
T ss_pred EEEEEEEecccCCCCceEEEEEEEEEEECCCC-------------hh-------hCCCEEEEEEcCCc
Confidence 9999997642 22468998888876331 11 14788888887543
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.89 E-value=0.11 Score=48.17 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=84.9
Q ss_pred CceeEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCC-------------
Q 004297 35 EQMQYLYVRVVKAKDLPPKDV----TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ------------- 97 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~----~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~------------- 97 (763)
+...+|+++|..++.+...-. ...+--.+-+.+++|.++|+.+..+.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 344589999999987754321 222333566667899999999999999999999999984321
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--ccceEEEEEEEEcc
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWMGT 163 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~~~ 163 (763)
.+.+.+.|---+.. ...++|+-.++-..+....... ..--.+|....++ -..|-|.+++.+.+
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCCccceeEEEEEEEeec
Confidence 24677777666655 5589999999888777654210 1112234333222 25699998887765
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.59 E-value=0.093 Score=49.25 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=62.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEEE----eeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|+|++|.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEE
Confidence 4788999999998642 34788988854 66553 4444443 67999999888776 3 3 67999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
|+..... + .++....||.+.++|-+-
T Consensus 81 ~~~~~~~-~---~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 81 CSVKGRK-G---AKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEEeccc-C---CCCceEEEEEEEEEEECC
Confidence 9975321 0 011335799999999873
No 257
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.58 E-value=0.078 Score=50.75 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=71.9
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEe--c-CCCCceE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--D-RIQSSVL 101 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v--~-~~~~~~l 101 (763)
.|+++ .++|+|+.+.++... ....+-||++.+ |++ ..+|+.+..+.++.|||.+.|++ . -+.+..|
T Consensus 4 w~~~~---~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArL 78 (173)
T cd08693 4 WDIEE---KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARL 78 (173)
T ss_pred eccCC---CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeE
Confidence 34544 589999999999862 234566777644 553 34666666567899999999986 2 3347899
Q ss_pred EEEEEeCCCC-----------------CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 102 EVTVKDKDFV-----------------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 102 ~i~V~d~~~~-----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
.|.||+.... .+..||.+.+.|-+.. +.=.+|...+.+|..
T Consensus 79 citi~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~--------------------~~Lr~G~~~L~lW~~ 136 (173)
T cd08693 79 CFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK--------------------GQLKTGDHTLYMWTY 136 (173)
T ss_pred EEEEEEecccccccccccccccccccCcceEEEEEeEEEEccc--------------------chhhcCCeEEEecCC
Confidence 9999997542 1356777776666533 211247888888854
No 258
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.50 E-value=0.033 Score=63.46 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=74.4
Q ss_pred eEEEEEEEEccccCCCCCCCCCCcEEEEEECC-------EEEeeecccCCCCCccccce-EEEE-eeCCCCCeEEEEEEE
Q 004297 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-------QALRTRVSASRTINPMWNED-LMFV-AAEPFEEHLILTVED 270 (763)
Q Consensus 200 g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~~t~nP~wne~-f~f~-~~~~~~~~L~i~V~d 270 (763)
+.+.|+|++++-|..++. ..||.|.+-+ ..++|+++..++.||+|+|. |.|. +--|.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 468999999999987764 5899999864 56889998877999999966 7774 445556789999998
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccc
Q 004297 271 RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (763)
Q Consensus 271 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (763)
. ...+||+-.+++..+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCC
Confidence 5 56799999999988853 4455566553
No 259
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.46 E-value=0.056 Score=50.04 Aligned_cols=41 Identities=15% Similarity=0.518 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCchhhHHHHHHHHHHHHc
Q 004297 563 SMRRILSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLY 603 (763)
Q Consensus 563 r~~~~~~~~~~~~~~l~~~~~W~~p~~s~~~~~~~~~~~~~ 603 (763)
|+...+.-+-..+..++.+++|++|..|.++.++.++++.-
T Consensus 70 rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 70 RVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 44556888888999999999999999999998887776543
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.25 E-value=0.15 Score=48.88 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=64.6
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEEE----eeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|+|+.+.+|... ....+-||.+.+ |++.. .|+.+.-+.++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 4789999999999751 134677888744 77653 5555554567999999988776 3 3 67999999
Q ss_pred EeCCCCCCCCC--------CCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGGDK--------AGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~~~--------~~~~~d~~lG~v~i~l~~l 461 (763)
|+......+.+ ..++++..||.+.++|-+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 99754221111 0122457899999988763
No 261
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.88 E-value=0.26 Score=46.41 Aligned_cols=92 Identities=23% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEeCCCC-CCeeeEEEEEEcccc
Q 004297 57 GSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (763)
Q Consensus 57 ~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (763)
..+|-||++.+ +++ ..+|..+.-+..+.|||...|++. -+.+..|.|+||+.+.. +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45678888865 443 236666666778899999999972 23478999999998765 677999999988764
Q ss_pred CCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCCCC
Q 004297 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEA 168 (763)
Q Consensus 127 ~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~ 168 (763)
. + .|. +|...+.+|....+|..
T Consensus 108 ~-g------------~Lr-------~G~~~l~lw~~~~~d~~ 129 (159)
T cd08397 108 D-G------------TLR-------RGRQKLRVWPDVEADGS 129 (159)
T ss_pred C-C------------cEe-------cCCEEEEEEeCCCCCCc
Confidence 2 1 122 48888999987766653
No 262
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.66 E-value=0.3 Score=45.98 Aligned_cols=107 Identities=21% Similarity=0.355 Sum_probs=71.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEe---cCCCCceEEEEEEeCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK---DRIQSSVLEVTVKDKD 109 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v---~~~~~~~l~i~V~d~~ 109 (763)
.++|++....++...+ ....+-||++.+ |++ ...|.......++.|||...|++ +-+.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5778888888776521 234566776654 553 23444444447899999999986 2234789999999976
Q ss_pred CC---CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCC
Q 004297 110 FV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQAD 166 (763)
Q Consensus 110 ~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d 166 (763)
.. ++..+|.++++|-+... .|. +|...+.+|-....+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------------~L~-------~G~~~l~lW~~~~~~ 127 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------------KLR-------QGMITLNLWPGKKTD 127 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------------cEe-------cCCEEEeccCCcccC
Confidence 54 35899999998877431 122 477888888654433
No 263
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.27 E-value=1.6 Score=40.23 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=77.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeeeee-CCCCCCeeccEEEEEec--------CCCCceEEEE
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK---GTTRHF-EKKTNPEWNQVFAFSKD--------RIQSSVLEVT 104 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~~~-~~t~nP~Wne~f~f~v~--------~~~~~~l~i~ 104 (763)
...+.|+|.+..+++. ....-+|+..-++.. .+|... ..+-.-.|||+|.+.+. ......+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3567899999998876 223446666656543 455544 33445789999998751 1345678899
Q ss_pred EEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
|+..... +...+|.+.++|+++..... .....-++|... ......|.+++.+...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~--~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKC--KKSNATLSISISLSEL 137 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccC--CCCCcEEEEEEEEEEC
Confidence 9887543 33699999999999987531 113344566654 2345778888776543
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.27 E-value=1 Score=41.61 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=77.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE---Eeeeee-cCCCCCccccEEEEEee---CC------CcEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW---VRTRTI-IDSPTPKWNEQYTWEVF---DP------CTVIT 428 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~---~~T~~~-~~t~~P~wne~~~~~v~---~~------~~~l~ 428 (763)
-.+.|.|++..+++. ...--||+.+.|+.. ..|... ..+-.-.|||.|.+.+. +. ...++
T Consensus 7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 467889999998874 223456666666653 444433 34567899999998876 11 23688
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC--CeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|.|+.....+ +...||++.|+|+++.+. .....-++|... .+....+++.+.+..
T Consensus 80 ~~v~~~~~~~--------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG--------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC--------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 9998874321 335899999999998763 566777888542 123467788777754
No 265
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.27 E-value=0.072 Score=60.87 Aligned_cols=85 Identities=20% Similarity=0.301 Sum_probs=66.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-------EEEeeeeecC-CCCCcccc-EEEEEe--eCCCcEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-------KWVRTRTIID-SPTPKWNE-QYTWEV--FDPCTVITI 429 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-------~~~~T~~~~~-t~~P~wne-~~~~~v--~~~~~~l~i 429 (763)
.+.+.|+|+.++=|-.+ +...||.|.+-| +.+||+++.+ +.||+|+| .|.|.- ...-..|+|
T Consensus 702 A~t~sV~VISgqFLSdr-------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR-------KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred EeeEEEEEEeeeecccc-------ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 47899999999988643 344799997733 3489998875 78999997 477742 233678999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD 464 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~ 464 (763)
.||++ ...+||+-.+++..|.+|
T Consensus 775 avyeE------------ggK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 775 AVYEE------------GGKFIGQRILPVDGLNAG 797 (1189)
T ss_pred eeecc------------CCceeeeeccchhcccCc
Confidence 99997 346999999999999887
No 266
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=94.07 E-value=0.0099 Score=56.96 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcC
Q 004297 680 TVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFR 741 (763)
Q Consensus 680 ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r~i~l~~g~~~~~~p~~r 741 (763)
.....++..+..++.++.|++|..|..++++|.+++.+..+++...++.+..+..+.=|.+.
T Consensus 88 ~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly 149 (169)
T PF02453_consen 88 SVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLY 149 (169)
T ss_dssp HCCCCCCHHHHHHHCCCHCT-TTGGG------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHH
Confidence 33445666788899999999999999999999999999998887766666444444445444
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.85 E-value=0.32 Score=45.79 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCCCcEEEEEE--CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEEEeCCCCCCCCCCCCCCCCccEE
Q 004297 384 GTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARDSRIGK 453 (763)
Q Consensus 384 g~~Dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~ 453 (763)
..+|-||.+.+ |++. .+|..+.-+..+.|||-++|++. + | ...|.|.|||.+..+ +...||.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--------~~~~vg~ 99 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--------KAVPFGG 99 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC--------CceEEEE
Confidence 35788888855 6654 36665655677899999988876 3 3 779999999986432 5678999
Q ss_pred EEEecccc
Q 004297 454 VRIRLSTL 461 (763)
Q Consensus 454 v~i~l~~l 461 (763)
+.++|-+-
T Consensus 100 ~~~~lFd~ 107 (159)
T cd08397 100 TTLSLFNK 107 (159)
T ss_pred EEEeeECC
Confidence 99998874
No 268
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.72 E-value=0.63 Score=44.52 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=59.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE---EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW---VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVF 432 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~---~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V~ 432 (763)
..++|+|.++..+ .. +......-||.+.+ |++. .+|....-+.++.|||-++|++. | | ...|.|.||
T Consensus 10 ~~friki~~~~~~-~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDIP-VL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeeccc-Cc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 3677888888743 22 11122345666633 5554 36666656678999998888876 3 3 679999999
Q ss_pred eCCCCC-----CCC---CCCCCCCCccEEEEEecccc
Q 004297 433 DNCHLH-----GGD---KAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 433 d~~~~~-----~~~---~~~~~~d~~lG~v~i~l~~l 461 (763)
+..... .|. +..++.+..||.+.+.|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 86 CGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 974211 011 12223577889998888763
No 269
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.61 E-value=0.56 Score=44.15 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=61.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|.|..+.++... .....+-||.+.+ |++. ..|.....+.++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 8 FNLRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred CCeEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence 3677888888887641 1234677777744 6653 24433333468999999999865 3 3 67999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
|+.+..+ . .++..||.+.++|-+-
T Consensus 84 ~~~~~~~--~----~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 84 YAVSEPG--S----KKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEEecCC--C----CcceEEEEEeEEeEcc
Confidence 9976421 0 1467999999999874
No 270
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.56 E-value=1.3 Score=36.72 Aligned_cols=64 Identities=25% Similarity=0.412 Sum_probs=50.2
Q ss_pred CCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccC
Q 004297 59 CDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127 (763)
Q Consensus 59 ~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~ 127 (763)
++-.+++++++ ...+|.-.. -.+..|++.|.+.++. +..|+|.||=+|. ..+.|...+.|++..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 58889999988 566776543 3578999999999986 6789999988765 467777888888844
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.25 E-value=0.34 Score=49.00 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~ 437 (763)
...|.|.++++.++||.-... ..+-..+-||++.++.+ ..||.+......-.|.|.|...+.. ..++.+-||.|+.-
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 345999999999999975422 12335789999998765 4677777677777889999988775 45788888888753
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.66 E-value=2.3 Score=40.76 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred eecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---eeeeeeeCCCCCCeeccEEEEEec---CCCCceE
Q 004297 30 TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY---KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVL 101 (763)
Q Consensus 30 ~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~---~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l 101 (763)
.+|+.. .++|+|.++.++.. +......-||++.+ |++ ..+|.....+.++.|||.+.|++. -+....|
T Consensus 5 lwdi~~---~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 5 LWDCDR---KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred eEecCC---CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEE
Confidence 355554 47788888874432 22222345666533 443 235666666778999999999872 3347899
Q ss_pred EEEEEeCCC
Q 004297 102 EVTVKDKDF 110 (763)
Q Consensus 102 ~i~V~d~~~ 110 (763)
.|.||+...
T Consensus 81 c~ti~~~~~ 89 (178)
T cd08399 81 NLQIYCGKA 89 (178)
T ss_pred EEEEEEEec
Confidence 999999743
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.58 E-value=1.2 Score=42.56 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=70.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeeeC----CCCCCeeccEEEEEec---CCCCceEEEEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYK----GTTRHFE----KKTNPEWNQVFAFSKD---RIQSSVLEVTV 105 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~~----~kT~~~~----~t~nP~Wne~f~f~v~---~~~~~~l~i~V 105 (763)
.+.|+|..+.+++........|-||.+.+ |++. ..|+... -...+.|||.+.|++. -+.+..|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68899999999987654445778888755 5532 2444321 1335779999999872 23478999999
Q ss_pred EeCCCC----------CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 106 KDKDFV----------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 106 ~d~~~~----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|+.... ++..||.+++.|-+.. |.-.+|...+.+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~L~~G~~~L~lW~~~ 136 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GVLRQGSLLLGLWPPS 136 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcch--------------------hhhccCCEEEEeccCC
Confidence 997653 2467787777776643 1112478888888654
No 274
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.47 E-value=2.3 Score=39.22 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred eeeeeCCC-CCCeeccEEEEEe---cCCCCceEEEEEEeCCCC-CC----eeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 73 TTRHFEKK-TNPEWNQVFAFSK---DRIQSSVLEVTVKDKDFV-KD----DFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 73 kT~~~~~t-~nP~Wne~f~f~v---~~~~~~~l~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|+....+ .++.|||.+.|++ +-+.+..|.|.||+.+.. .. ..||.+.+.|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56666555 7999999999986 234578999999998776 33 6999999998876321 2
Q ss_pred ecCCCCccceEEEEEEEEcccCC
Q 004297 144 EDRKGDKVRGELMLAVWMGTQAD 166 (763)
Q Consensus 144 ~~~~~~~~~G~i~l~~~~~~~~d 166 (763)
.+|...+.+|-....+
T Consensus 90 -------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------EEEEEEEE-EET-TTS
T ss_pred -------cCCCEEEEEEcCCCCc
Confidence 2488999988765443
No 275
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.17 E-value=1 Score=43.17 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=62.4
Q ss_pred EEEEEEEEccccCCCCCCCCCCcEEEEEE--CCEEE----eeeccc--C-CCCCccccceEEEEee---CCCCCeEEEEE
Q 004297 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQAL----RTRVSA--S-RTINPMWNEDLMFVAA---EPFEEHLILTV 268 (763)
Q Consensus 201 ~L~V~i~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~L~i~V 268 (763)
.+.|+|..+.+++........|-||.+.+ |++.. .|+... + -...+.|||...|++. -|.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999987765555788887754 55432 343211 1 1235779999999863 34567999999
Q ss_pred EEccCCC---------CCceeEEEEEecccc
Q 004297 269 EDRVAPN---------KDEVLGKCMIPLQYV 290 (763)
Q Consensus 269 ~d~d~~~---------~d~~iG~~~i~l~~l 290 (763)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976543 356899999988654
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.43 E-value=1.9 Score=39.89 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=45.0
Q ss_pred cEEEEEE--CCEE-----EeeeeecCC-CCCccccEEEEEee--C-C-CcEEEEEEEeCCCCCCCCCCCCCCC----Ccc
Q 004297 388 AYCVAKY--GQKW-----VRTRTIIDS-PTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARD----SRI 451 (763)
Q Consensus 388 pyv~v~~--~~~~-----~~T~~~~~t-~~P~wne~~~~~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~~~d----~~l 451 (763)
-||.+.+ |++. ..|..+.-+ .++.|||.++|++. + | ...|.|.||+.+... .+ ..|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~--------~~~~~~~~l 75 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK--------KSKKKKVPL 75 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST--------TT--EEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC--------ccccceeEE
Confidence 3555533 6654 255555555 79999999998876 3 3 779999999876542 22 689
Q ss_pred EEEEEecccc
Q 004297 452 GKVRIRLSTL 461 (763)
Q Consensus 452 G~v~i~l~~l 461 (763)
|.+.++|-+.
T Consensus 76 gw~n~~lFd~ 85 (142)
T PF00792_consen 76 GWVNLPLFDY 85 (142)
T ss_dssp EEEEEESB-T
T ss_pred EEEEEEeECC
Confidence 9999999875
No 277
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=87.17 E-value=4.3 Score=35.34 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=50.9
Q ss_pred EEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--------CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 389 YCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 389 yv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--------~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
||.+.+-+..-.|..+..+.+|.+|-+..|.|.-. ...+.|+++..-.. ..+.||.++|++.+
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~---------d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS---------DFETLAAGQISLRP 72 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS----------EEEEEEEEE--SH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC---------CeEEEEEEEeechh
Confidence 67776655544444444589999998888877632 45799999985421 46799999999999
Q ss_pred ccC--CCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 461 LET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 461 l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+.. +..+.....|.+.. |. .-|.|+..++..
T Consensus 73 ll~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 73 LLESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp HHH--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred hhcCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 853 32456666675433 22 469998888764
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.78 E-value=3.6 Score=35.36 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEeCCC
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKDKDF 110 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d~~~ 110 (763)
+.+++....+.........++-||.+.+ |++ ...|+.+....++.|||...|++. -+.+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5567777777765543333578888855 553 335666655667999999999862 3347899999998643
No 279
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=86.62 E-value=8 Score=32.22 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 384 GTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 384 g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
|-++..|++++++.. .+|....- .+..|++.|++++.. +.+|+|.||=.|. ..+-|-..+.|.+..
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~-----------RslCav~~lrLEd~~ 73 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW-----------RSLCAVKFLKLEDER 73 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc-----------hhhhhheeeEhhhhc
Confidence 447788999998864 56665443 578899999998754 7789999987654 236677777787743
Q ss_pred CCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 463 TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 463 ~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.+ .-.+| ..+|.+..++.|
T Consensus 74 ~~----~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 74 HE----VQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred cc----ceecc--------ccccEEEEEEEe
Confidence 22 12222 346778777766
No 280
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.32 E-value=1.5 Score=44.56 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=62.7
Q ss_pred ecccCceeEEEEEEEEeecCCCC--CCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPK--DVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~--~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
+++..-.|.|.++++.+++|... +.+-+-+-||++....+ +.+|.+.....-=.|.|+|..++.. ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 45566779999999999999643 22446788999999874 6678877777777899999998765 4567888888
Q ss_pred CCCC-CCee
Q 004297 108 KDFV-KDDF 115 (763)
Q Consensus 108 ~~~~-~d~~ 115 (763)
++.- +.++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 7764 4443
No 281
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=85.54 E-value=0.96 Score=52.74 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=80.7
Q ss_pred CCCCcEEEEEECCEE-EeeeeecCC-CCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 384 GTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 384 g~~Dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
..+++|+.+.+.... .+|..+++. .+|.|.+.|...+......+++.|-+.+..| ....+|.+.++...+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G--------~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG--------WSKRWGRVKISFLQY 207 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc--------ceeEEEEeccchhhh
Confidence 457999999997765 688888887 6999999998888888889999998877754 467999999999999
Q ss_pred cCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
..+....+|+++...+.....+.-.+.+.+.|.+.
T Consensus 208 ~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 208 CSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred hccccccceeeeeccCCccccCCcccceEEeeEee
Confidence 99988999999976554322222234555555443
No 282
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=85.31 E-value=8.5 Score=37.24 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=32.7
Q ss_pred eeeeeeeCCCCCCeeccEEEEEe--cCCCCceEEEEEEeCCCC
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSK--DRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~l~i~V~d~~~~ 111 (763)
..+|.+.+.+.+|.|+|++-+.+ +.....-|.|++++....
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~ 96 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN 96 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccc
Confidence 56788888899999999998877 334567899999887653
No 283
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=84.30 E-value=9.1 Score=36.96 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=31.7
Q ss_pred eeeeeeeCCCCCCeeccEEEEEec--CCCCceEEEEEEeCCC
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~d~~~ 110 (763)
.++|.+...+.+|.|+|++-+.+. .....-|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 457888899999999999988873 3356788998887654
No 284
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.84 E-value=22 Score=33.88 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCCcEEEEEECCE-EEeeecccC-CCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCC
Q 004297 220 FPEVYVKAQLGNQ-ALRTRVSAS-RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297 (763)
Q Consensus 220 ~~dpyv~v~l~~~-~~kT~~~~~-~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~ 297 (763)
+..-|+++.++++ ..+|+...- ..-.-.|+|.|.+.+.. .-+.|.++||.... ..+..|+++.+++-.........
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~ 113 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTD 113 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccccccc
Confidence 3467999999875 455554321 12335578999998866 56789999999866 68899999999987654321111
Q ss_pred CCCceeEEcccc
Q 004297 298 PVNTRWYNLEKH 309 (763)
Q Consensus 298 ~~~~~w~~L~~~ 309 (763)
.....|+.....
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114456555443
No 285
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.72 E-value=7.3 Score=33.46 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=45.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEEE----eeeeecCCCCCccccEEEEEee--C-C-CcEEEEEEEe
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVFD 433 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V~d 433 (763)
+.+.+..+.+...... ...+|-||.+.+ |++.. .|..+.-+..+.|||-++|++. + | ...|.|.||+
T Consensus 13 ~~~~~~~~~~~~l~~~---~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLNWS---RDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcccc---cCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 4556666666654211 122588888854 66643 5555544557999999888766 3 3 6799999998
Q ss_pred CC
Q 004297 434 NC 435 (763)
Q Consensus 434 ~~ 435 (763)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 64
No 286
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.81 E-value=4.8 Score=39.03 Aligned_cols=58 Identities=9% Similarity=0.157 Sum_probs=35.0
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
.+.|.+.+++.+|.|+|+|.+.+.. +..-|.+++++...-. +. .++..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~-~~----~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE-SK----EKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS-SS-----SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc-cc----CccceeEEEEEEeee
Confidence 4788888999999999999998874 3668999999976532 00 022799999999988
No 287
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.14 E-value=7.2 Score=33.94 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=50.3
Q ss_pred EEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecC-------CCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCC
Q 004297 62 YVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDR-------IQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (763)
Q Consensus 62 yv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~-------~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (763)
||.+.+-+ +.+.|.++. +.||.+|-+-.|.+.. +.+..+.|+++..-......+|.+.+++.++.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~-- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG-- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC--
Confidence 56666666 456677666 8899999999888743 235789999998764477899999999999985431
Q ss_pred CCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 134 SPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
.....-..|.+.+|+ .-|.|...+.+
T Consensus 79 -~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 79 -ERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp ---EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred -ceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 112333455555554 56777766544
No 288
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=75.79 E-value=7.1 Score=31.19 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=32.6
Q ss_pred eccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccC
Q 004297 286 PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGG 335 (763)
Q Consensus 286 ~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~ 335 (763)
+++.+.. ++++....+|..|.++.+... ..+|++++++++.+.
T Consensus 2 DlgtVY~-qP~H~~~~KW~~L~dP~D~~~------G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYN-QPDHQFYRKWALLTDPDDTSA------GVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeec-CCCCeeEeceEEecCCCCCcc------CCceEEEEEEEEEcC
Confidence 4555663 567888999999999865433 458999999998765
No 289
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.93 E-value=10 Score=36.72 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=42.5
Q ss_pred EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecc
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~ 459 (763)
..++|.+.+.+.+|.|+|.+.+.+.- +..-|.+++++.......+ .....+|..-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd----~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKD----KSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccC----CCCCceEEEEEeee
Confidence 35899999999999999999998873 4667889988864321001 12356888888875
No 290
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=74.29 E-value=6.8 Score=42.49 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhhcccCchhHHHHHHHHHHHHHHHhh
Q 004297 672 RSIAGRIQTVVGDLATQG---ERLQSLLSWRDPRATALFVIFCLIAAIVLYV 720 (763)
Q Consensus 672 ~~~~~~vQ~~~~~~a~~~---e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~ 720 (763)
..+..++-..|+.+-.++ +++.++++|++|..|..+++++..+++..++
T Consensus 9 ~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 9 SSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred HhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 344555666667777777 9999999999998887766666655554444
No 291
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=73.39 E-value=9 Score=36.98 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=40.6
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecc
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~ 459 (763)
.++|.+.+.+.+|.|||++.+.+.- +..-|.+++++..... + .....+|..-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~---k---~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD---K---GEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc---C---CCCCceEEEEEeec
Confidence 4789999999999999999998873 4667888888754321 1 02256777777764
No 292
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=72.40 E-value=12 Score=36.19 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=32.3
Q ss_pred eeeeeeeCCCCCCeeccEEEEEec--CCCCceEEEEEEeCCCC--C--CeeeEEEEEEccc
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDFV--K--DDFMGRVLFDLNE 125 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~d~~~~--~--d~~lG~~~i~l~~ 125 (763)
...|.+...+.+|.|+|+|-+.+. .....-|.|++++...- + +..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 346777788899999999998873 23467899999997654 2 2577877777766
No 293
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=71.82 E-value=20 Score=34.09 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=52.3
Q ss_pred CCcEEEEEECCEE-Eeeeeec--CCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 386 TDAYCVAKYGQKW-VRTRTII--DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 386 ~Dpyv~v~~~~~~-~~T~~~~--~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
..-|+++.++++. .+|+... ....-.|||.|.+.+..--..|.|+||..... .+..|+.+.|++-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~---------~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL---------SDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc---------cceEEEEEEeeCCCCc
Confidence 4468999998875 4555443 23345568999999988778899999997653 6889999999988764
Q ss_pred C
Q 004297 463 T 463 (763)
Q Consensus 463 ~ 463 (763)
.
T Consensus 108 ~ 108 (168)
T PF15625_consen 108 V 108 (168)
T ss_pred c
Confidence 3
No 294
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=71.36 E-value=16 Score=34.97 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=43.8
Q ss_pred EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
..+.|.+.+++.+|.|+|++.+.+.- +..-|.+++++-+... +. ..+.....+|...++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~-k~-~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQK-KQ-EGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccc-cc-cCCCccceEEEEEEeeec
Confidence 45788899999999999999988873 3567889999865421 00 001134668888888764
No 295
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=69.95 E-value=9.5 Score=30.46 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=36.4
Q ss_pred EccccCCCCCCCCCCcCeEEEeecCCC--CccceEEEEEEEEcccCCCCCCccc
Q 004297 122 DLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEAW 173 (763)
Q Consensus 122 ~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~~ 173 (763)
++..+..+ ++|....+|..|.++.. ...+|.|++++.+...+|+.....+
T Consensus 2 DlgtVY~q--P~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~~ 53 (72)
T PF08151_consen 2 DLGTVYNQ--PDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEKK 53 (72)
T ss_pred ceeeeecC--CCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCCC
Confidence 34444443 45788899999998863 3468999999999988887655443
No 296
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=69.20 E-value=28 Score=38.97 Aligned_cols=117 Identities=20% Similarity=0.290 Sum_probs=78.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
-.++|.|.+.+||+... -.-=.||...+.|++.+|.-. ....|.|..+-.|.-..|-..+.+.+|-+..- -
T Consensus 341 ~smevvvmevqglksva-----pnrivyctmevegeklqtdqa-easkp~wgtqgdfstthplpvvkvklftestg---v 411 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVA-----PNRIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTG---V 411 (1218)
T ss_pred eeeeEEEeeeccccccC-----CCeeEEEEEEecccccccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeecce---e
Confidence 35778889999997641 123469999999999888754 34579999999998888888999999987531 0
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 492 (763)
. .-.|.-||+|.+--..=.. ....|+.+...+.... ..=+|.+.++
T Consensus 412 l--aledkelgrvil~ptpns~--ks~ewh~mtvpknsqd-qdlkiklavr 457 (1218)
T KOG3543|consen 412 L--ALEDKELGRVILQPTPNSA--KSPEWHTMTVPKNSQD-QDLKIKLAVR 457 (1218)
T ss_pred E--EeechhhCeEEEecCCCCc--CCccceeeecCCCCcC-ccceEEEEEe
Confidence 0 0157789999886554322 2356887765443222 1134555555
No 297
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=67.72 E-value=29 Score=33.53 Aligned_cols=64 Identities=8% Similarity=0.091 Sum_probs=44.7
Q ss_pred EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCC-CCCCCCCCccEEEEEeccc
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGD-KAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~-~~~~~~d~~lG~v~i~l~~ 460 (763)
..+.|.+.+++.+|.|+|++.+.+.- +..-|.++.++-....... +........+|.+.++|-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46888999999999999999987773 4667999999875321000 0111234678888888876
No 298
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=67.18 E-value=15 Score=41.92 Aligned_cols=81 Identities=31% Similarity=0.430 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCc
Q 004297 661 SDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRF 740 (763)
Q Consensus 661 ~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r~i~l~~g~~~~~~p~~ 740 (763)
+..++..++++-.. ++=-++.+.-.|.-|-+|++|+-|..++++-+++.++=+++|.-+++|+.. +.+|+.
T Consensus 90 pdkLRa~lERlY~t------v~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~l---i~~P~~ 160 (642)
T PF11696_consen 90 PDKLRANLERLYMT------VVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIAL---ILSPPA 160 (642)
T ss_pred hHHHHHHhHhheee------hHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccc
Confidence 34555555554431 122344455667778899999999999999999988888889855555433 356777
Q ss_pred CCC-CCCchhh
Q 004297 741 RHK-LPSVPLN 750 (763)
Q Consensus 741 r~~-~p~~~~~ 750 (763)
|.- .|+.|..
T Consensus 161 r~~lFPpap~a 171 (642)
T PF11696_consen 161 RSILFPPAPPA 171 (642)
T ss_pred ccccCCCCCcc
Confidence 743 3555543
No 299
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=66.52 E-value=61 Score=33.83 Aligned_cols=109 Identities=9% Similarity=0.151 Sum_probs=72.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCc--cccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPK--WNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~--wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
-.|-|.|.+..++.. ....|+.+..|...++|..+.-+..=. -.+.....+..-...|+|.||-....
T Consensus 58 F~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-- 127 (508)
T PTZ00447 58 FYLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-- 127 (508)
T ss_pred eeEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc--
Confidence 456667777666643 456799999999999997665333222 22445555555567899999997654
Q ss_pred CCCCCCCCCCccEEEEEeccc-c-cCCCeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLST-L-ETDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~-l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
+..-||.+.|++.. + ...=+...||-+.. .| ...++|+|++
T Consensus 128 -------kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k---DG-q~~cRIqLSF 170 (508)
T PTZ00447 128 -------KKVHIGQIKIDINASVISKSFPKNEWFVCFK---DG-QEICKVQMSF 170 (508)
T ss_pred -------ceeEEEEEEecccHHHHhccCCccceEEEec---CC-ceeeeEEEEe
Confidence 56789999999986 3 33335678999942 23 2347777654
No 300
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=65.30 E-value=51 Score=38.91 Aligned_cols=106 Identities=15% Similarity=0.255 Sum_probs=67.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE----CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY----GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITI 429 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~----~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i 429 (763)
..++|+++++.++-. ....|-+|.|+. |++. ..|..+....+|.||+.++|.+. | | ...|-+
T Consensus 343 ~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 578889998887732 234566776644 5554 34555656789999998888776 4 3 557777
Q ss_pred EEEeCCCCC-C-------CCCCCCCCCCccEEEEEecccc----cCCCeEeeeEee
Q 004297 430 GVFDNCHLH-G-------GDKAGGARDSRIGKVRIRLSTL----ETDRVYTHSYPL 473 (763)
Q Consensus 430 ~V~d~~~~~-~-------~~~~~~~~d~~lG~v~i~l~~l----~~~~~~~~~~~L 473 (763)
.||--.... . +.+.++..+..+|.|.+.|-+- ..|+..-+-|+.
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 777642110 0 0112334678899999888764 456655555554
No 301
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=65.17 E-value=1.5 Score=48.75 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=102.9
Q ss_pred EEEEEEEccccCCCC----CCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeCCCC-CeEEEEEEEccCCCC
Q 004297 202 LRVNVIEAQDLQPTD----KGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE-EHLILTVEDRVAPNK 276 (763)
Q Consensus 202 L~V~i~~a~~L~~~~----~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~-~~L~i~V~d~d~~~~ 276 (763)
.-.+++.|.++++.- ..-+.++++...++.+.++|+.... +.+|.|||. .+...+.+. ..| .
T Consensus 282 ~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~-~e~piyNe~-~~E~~~Fqsn~~l-----------~ 348 (975)
T KOG2419|consen 282 ALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDD-TEKPIYNED-EREDSDFQSNRYL-----------G 348 (975)
T ss_pred HHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhcc-ccccccccc-ccccccchhhHHH-----------h
Confidence 334455555553221 1124589999999999999999877 999999997 554433221 122 3
Q ss_pred CceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcchhhh
Q 004297 277 DEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQL 356 (763)
Q Consensus 277 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~ 356 (763)
..++|.|+.++.+-+...--+......+.. .+
T Consensus 349 ~kiv~~~~~~lndS~A~f~vq~~~sn~~~~-~p----------------------------------------------- 380 (975)
T KOG2419|consen 349 NKIVGYCELDLNDSYANFVVQRAKSNFFIS-EP----------------------------------------------- 380 (975)
T ss_pred hhccccccccccchhhhhhhhhhhcccccc-Cc-----------------------------------------------
Confidence 446666666666522110000000000000 00
Q ss_pred ccCCcceEEEEEEEccCCCCCccCC--CCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEE
Q 004297 357 WKSSIGVLELGILNAQGLMPMKTKD--GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVF 432 (763)
Q Consensus 357 ~~~~~g~l~v~v~~a~~L~~~~~~~--~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~ 432 (763)
....+.+.+..-...+|++.+..+ ....+|||.++.+|...+.+..-....+|..++.-.+.+.+- .-.+.+.++
T Consensus 381 -E~~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~ 459 (975)
T KOG2419|consen 381 -ESTCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEF 459 (975)
T ss_pred -cccceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehH
Confidence 001112222222222333322211 235699999999998877777777788888887666666653 446667777
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
+..... -.+.+....+...+..
T Consensus 460 ~~l~~~--------F~~vvaa~~~~~~D~~ 481 (975)
T KOG2419|consen 460 SDLSFA--------FGNVVAANKLAWFDML 481 (975)
T ss_pred HHHHHH--------HHHHHHhhhcchhhhc
Confidence 655432 2334555555544443
No 302
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=61.01 E-value=1.1e+02 Score=32.03 Aligned_cols=114 Identities=13% Similarity=0.204 Sum_probs=75.8
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCc--cccceEEEEeeCCCCCeEEEEEEEccCC
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINP--MWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP--~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (763)
.+...|-|.|.+..++.. ....|+.+..|+...+|..+.- +..- .-.+.....+.. .+..|++.|+-. .+
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpT-sKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKK-kL 126 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPT-NKKNRIHIDQRVDIKIRQ-CDETLRVDLFTT-KL 126 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEcccccc-CcCceEEEeeeeeeeeee-cCceEEEEEEec-cc
Confidence 455678888888776643 3478999999998888866543 2111 333444455533 466899999886 45
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEcccccccccccccCCceeceEEEEEE
Q 004297 275 NKDEVLGKCMIPLQY-VDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRIC 331 (763)
Q Consensus 275 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~ 331 (763)
-+...||.+.+++.. +.. ..-+..+||.+... +...+++.++..
T Consensus 127 vkk~hIgdI~InIn~dIId---k~FPKnkWy~c~kD----------Gq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVIS---KSFPKNEWFVCFKD----------GQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHh---ccCCccceEEEecC----------CceeeeEEEEeh
Confidence 577899999999875 332 24457899999653 244566666554
No 303
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=57.95 E-value=32 Score=33.07 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=41.3
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
.++|-+..+ .+|.|+|++.+.+.. +..-|.+++++...... ........+|.+.++|-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~---~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKK---QGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccc---cCCCccceEEEEEEeccc
Confidence 355555555 999999999998863 36689999999764310 011256789999998876
No 304
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.92 E-value=15 Score=42.06 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=60.2
Q ss_pred CCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCC
Q 004297 57 GSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDS 134 (763)
Q Consensus 57 ~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~ 134 (763)
...+||+.|.+.-. ...+.+...+..|.|+++|...+.. ...+.|.|+..... .+.+...+++..+++... .
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~----~ 99 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL----A 99 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHH----h
Confidence 34688988888753 3355557789999999999999765 56788999887644 444444444444444321 1
Q ss_pred CCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 135 PLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 135 ~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
.....|..++. .|.+...+.+.
T Consensus 100 ~~~~~w~~~~~------~g~~~~~~~~~ 121 (694)
T KOG0694|consen 100 LEQRLWVLIEE------LGTLLKPAALT 121 (694)
T ss_pred hhhhhcccccc------ccceeeeeccc
Confidence 12345766443 36777766554
No 305
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=55.57 E-value=1.2e+02 Score=32.87 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCCcEEEEEECCEEEeeeeecC----CCC-Cccc-cEEEEEee--------CC------CcEEEEEEEeCCCCCCCCCCC
Q 004297 385 TTDAYCVAKYGQKWVRTRTIID----SPT-PKWN-EQYTWEVF--------DP------CTVITIGVFDNCHLHGGDKAG 444 (763)
Q Consensus 385 ~~Dpyv~v~~~~~~~~T~~~~~----t~~-P~wn-e~~~~~v~--------~~------~~~l~i~V~d~~~~~~~~~~~ 444 (763)
.+..||+|++.+--.+|..+.- +.+ |.-+ -.-.|.+. .+ ...|+|.||--..-..-. -
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCG--v 112 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCG--V 112 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccc--c
Confidence 4678999999998777776542 112 1212 12333332 11 257999999854311000 0
Q ss_pred CCCCCccEEEEEecccc-cCC---CeEeeeEeeeeeCCCCc-ccceEEEEEEEEeec
Q 004297 445 GARDSRIGKVRIRLSTL-ETD---RVYTHSYPLLVLYPNGV-KKMGEIHLAVRFTCS 496 (763)
Q Consensus 445 ~~~d~~lG~v~i~l~~l-~~~---~~~~~~~~L~~~~~~g~-~~~G~i~l~~~~~~~ 496 (763)
.....+||+++|+|.-= ..+ ...++|..+-.....+. +...++||.++..+.
T Consensus 113 ~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 113 GNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 12557999999998732 122 24578988844322221 224688888886543
No 306
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=54.33 E-value=43 Score=32.14 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=31.4
Q ss_pred EEEeeecccCCCCCccccceEEEEeeCCC--CCeEEEEEEEcc
Q 004297 232 QALRTRVSASRTINPMWNEDLMFVAAEPF--EEHLILTVEDRV 272 (763)
Q Consensus 232 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~d~d 272 (763)
..+.|.+.++ +.+|.|+|++...+.... ...|.|+.++..
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 4567888887 899999999998875443 458999998854
No 307
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=54.14 E-value=1.4e+02 Score=33.72 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=72.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC----CC
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV----KD 113 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~----~d 113 (763)
.-+.|.|.+..+|+.-.. ..=.||...+.+++.+|.... ...|.|+..-.|....+ -+.+.+.+|..... .|
T Consensus 341 ~smevvvmevqglksvap--nrivyctmevegeklqtdqae-askp~wgtqgdfstthp-lpvvkvklftestgvlaled 416 (1218)
T KOG3543|consen 341 LSMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVLALED 416 (1218)
T ss_pred eeeeEEEeeeccccccCC--CeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-CceeEEEEEeecceeEEeec
Confidence 346788888888875442 224699999999998887665 45799999988887654 57788899887664 67
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
+-+|++.+-- .++....+.|+.+.-+.+
T Consensus 417 kelgrvil~p-------tpns~ks~ewh~mtvpkn 444 (1218)
T KOG3543|consen 417 KELGRVILQP-------TPNSAKSPEWHTMTVPKN 444 (1218)
T ss_pred hhhCeEEEec-------CCCCcCCccceeeecCCC
Confidence 7888876642 223344678998876653
No 308
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.04 E-value=40 Score=32.39 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=36.0
Q ss_pred eecccCCCCCccccceEEEEeeCCC--CCeEEEEEEEccCC-----CCCceeEEEEEecc
Q 004297 236 TRVSASRTINPMWNEDLMFVAAEPF--EEHLILTVEDRVAP-----NKDEVLGKCMIPLQ 288 (763)
Q Consensus 236 T~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~d~d~~-----~~d~~iG~~~i~l~ 288 (763)
+.++.. ..+|.|+|+|.+.+.... ...|.|++++...- .....+|-+.++|-
T Consensus 56 ~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 444455 489999999999885443 55899999986532 23556777777665
No 309
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=51.48 E-value=17 Score=39.72 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.7
Q ss_pred ccEEEEEeccc-ccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 450 RIGKVRIRLST-LETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 450 ~lG~v~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
.+|.|.|++.. +..+.....|||+.+...++. ..|.+ +.++++.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeee
Confidence 48999999999 677778899999987655443 34777 5666543
No 310
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=49.98 E-value=35 Score=40.41 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCcEEEEEECCe-eeeeeeeCCC-CCCeeccEEEEEecCCCCceEEEEEEeCCCCC-CeeeEEEEEEccccCCCCCCCCC
Q 004297 59 CDPYVEVKMGNY-KGTTRHFEKK-TNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVK-DDFMGRVLFDLNEIPKRVPPDSP 135 (763)
Q Consensus 59 ~dPyv~v~~~~~-~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~-d~~lG~~~i~l~~l~~~~~~~~~ 135 (763)
+++|+.+.+... ..+|..+.+. .+|.|.+.|....... ...+.+.|.+.+... ...+|.+.++...+..+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~----- 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH----- 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccc-----
Confidence 488999998773 4567777666 7999999998877653 467888888877765 889999999999998762
Q ss_pred CcCeEEEeecCCCC
Q 004297 136 LAPQWYRLEDRKGD 149 (763)
Q Consensus 136 ~~~~w~~L~~~~~~ 149 (763)
...+|+++.+.++.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 36789988876643
No 311
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=49.70 E-value=96 Score=28.33 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=61.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEe------------cCCCCceEEEEEEe
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK------------DRIQSSVLEVTVKD 107 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v------------~~~~~~~l~i~V~d 107 (763)
|.|+-+.|-+.-- ....|-|..|++-|+.++|+.....-==.++|.|.|.. +.++...+.|+++.
T Consensus 4 L~i~aVTCPGv~L---~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWL---CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEe---CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 5566666644322 23459999999999999997665443334799999873 23456789999988
Q ss_pred CCCCCCeeeEEEEEEccccCCC
Q 004297 108 KDFVKDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 108 ~~~~~d~~lG~~~i~l~~l~~~ 129 (763)
...-.+..|+...-++.|+..-
T Consensus 81 l~~~~g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLFP 102 (140)
T ss_pred EeCCCCcEEEEEeccccceEcC
Confidence 6655577888888888888754
No 312
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=20 Score=31.13 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004297 661 SDIVRMRYDRLRSIAGRIQTVVGDLATQGER 691 (763)
Q Consensus 661 ~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~ 691 (763)
-+++..++.+|+.....+-+-+..=+-.++.
T Consensus 38 ~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~ 68 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDIGDEVRTQNKLLDG 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4678889999988666554333333333333
No 313
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.47 E-value=72 Score=30.81 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=31.3
Q ss_pred EEEeeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEcc
Q 004297 232 QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRV 272 (763)
Q Consensus 232 ~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d 272 (763)
....|.+..+ +.+|.|.|++.+.+... ....|.|+.++..
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 4577888887 89999999998877543 3558999999864
No 314
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=43.76 E-value=2.1e+02 Score=27.17 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=51.5
Q ss_pred EEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE---------EeeeeecC-----CCCCccccEEEEEeeC--C--C
Q 004297 365 ELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW---------VRTRTIID-----SPTPKWNEQYTWEVFD--P--C 424 (763)
Q Consensus 365 ~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~---------~~T~~~~~-----t~~P~wne~~~~~v~~--~--~ 424 (763)
.=.|.+|.+.. ..+-||+..+ |..| ..|.+.+. ...-.||..|++.... + .
T Consensus 5 ~G~I~~a~~f~---------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 5 IGEIESAEGFE---------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEEECCC---------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 33667787764 3466888855 4433 45555432 3356788877776653 3 4
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEec
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRL 458 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l 458 (763)
..|.|+||..|..+ ++...|...+.|
T Consensus 76 P~L~l~V~~~D~~g--------r~~~~GYG~~~l 101 (168)
T PF07162_consen 76 PQLVLQVYSLDSWG--------RDRVEGYGFCHL 101 (168)
T ss_pred ceEEEEEEEEcccC--------CeEEeEEeEEEe
Confidence 58999999999886 788888765554
No 315
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=42.97 E-value=27 Score=35.61 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=29.2
Q ss_pred hhHHHhhcCCCCCccc-cccCCCChhHHHHHHHHHHHHHH
Q 004297 498 LLNMMHMYSQPLLPKM-HYLHPLTVSQLDSLRHQATQIVS 536 (763)
Q Consensus 498 ~~~~~~~~~~p~~p~~-~~~~p~~~~q~~~~~~~~~~~~~ 536 (763)
..++.++++.|..|+| ||..|..+++|+.--.+...++.
T Consensus 37 aIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~ 76 (254)
T cd01459 37 AIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQ 76 (254)
T ss_pred EEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHH
Confidence 3345578999999999 99999888999865555544433
No 316
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=41.61 E-value=2.6e+02 Score=25.06 Aligned_cols=89 Identities=10% Similarity=0.155 Sum_probs=52.0
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECCEEE-eeecccCCCCCccccceEEEEee--CCCCCeEEEEEEEccC-CCCC
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQAL-RTRVSASRTINPMWNEDLMFVAA--EPFEEHLILTVEDRVA-PNKD 277 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~-kT~~~~~~t~nP~wne~f~f~~~--~~~~~~L~i~V~d~d~-~~~d 277 (763)
|.++=+.-..+|..+..+.+.||+++.-++... .+..... ...-.=.+.+.+.+. -+-...+.|.+++... ...+
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE-DPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC-CCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee-ccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 444444445566555566789999999988765 3343322 111111223333332 2235688999998763 4567
Q ss_pred ceeEEEEEeccccc
Q 004297 278 EVLGKCMIPLQYVD 291 (763)
Q Consensus 278 ~~iG~~~i~l~~l~ 291 (763)
+.+.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 77888888866553
No 317
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=39.29 E-value=50 Score=38.10 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH---HHHHhhhhhhhhhhhhhhhhccCC
Q 004297 675 AGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIA---AIVLYVTPFQVVALLTGFYVLRHP 738 (763)
Q Consensus 675 ~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~---~~~l~~vP~r~i~l~~g~~~~~~p 738 (763)
..-.+.+|-=+...+..++.+..|.+|..|..|+++.+.+ ..+-|++|.-+++++.+.-..||-
T Consensus 489 vav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 489 VAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334555556677888899999999999998765554433 236677888777666655556653
No 318
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.25 E-value=59 Score=38.43 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=12.2
Q ss_pred Hhhhhhhhhhhhhhhh
Q 004297 718 LYVTPFQVVALLTGFY 733 (763)
Q Consensus 718 l~~vP~r~i~l~~g~~ 733 (763)
++|||.+|++++.-.|
T Consensus 91 ~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 91 LFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 4569999999985544
No 319
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=39.15 E-value=3.1e+02 Score=25.95 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=52.6
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEEC----------CE-EEeeecccCC----CCCccccceEEEEeeCCCC---Ce
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLG----------NQ-ALRTRVSASR----TINPMWNEDLMFVAAEPFE---EH 263 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~----------~~-~~kT~~~~~~----t~nP~wne~f~f~~~~~~~---~~ 263 (763)
+.=.|..|.+.. ..+.||+-.+. .. ...|.+.+.. ...-.||..|++.+..... ..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344566676543 23668877663 13 4556555421 3446799888877654332 38
Q ss_pred EEEEEEEccCCCCCceeEEEEEec
Q 004297 264 LILTVEDRVAPNKDEVLGKCMIPL 287 (763)
Q Consensus 264 L~i~V~d~d~~~~d~~iG~~~i~l 287 (763)
|.|+||..|..+++.+.|...+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999999988766655
No 320
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=39.14 E-value=76 Score=27.83 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=41.6
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc--------------CCCeEeeeEeeeeeCCCCcccceEEEE
Q 004297 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE--------------TDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 424 ~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
...|.+.+++-.. |. .......||.+.|++.+.. ......+-|+|.+.. |. ..|+|.+
T Consensus 28 ~~pl~i~~~~~~~---~~--~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~I~l 99 (112)
T PF14924_consen 28 SFPLYIVVKKVPP---GF--PTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGEISL 99 (112)
T ss_pred CCceEEEEEecCC---CC--CCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeeeEEE
Confidence 3567777765432 00 0015678999999999873 112456789997533 33 5699999
Q ss_pred EEEEee
Q 004297 490 AVRFTC 495 (763)
Q Consensus 490 ~~~~~~ 495 (763)
.+++++
T Consensus 100 ~iRLsc 105 (112)
T PF14924_consen 100 YIRLSC 105 (112)
T ss_pred EEEEec
Confidence 999865
No 321
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=38.35 E-value=1.4e+02 Score=30.88 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCC
Q 004297 666 MRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHP 738 (763)
Q Consensus 666 ~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r~i~l~~g~~~~~~p 738 (763)
+-++.+..+...++.+.+.+....+...+..+-+ ....+-.+.++++++ +|+-+|.-++|.|+-.-|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~t~if--lPlt~i~g~fGMN~~~~p 262 (292)
T PF01544_consen 196 DLLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIVTAIF--LPLTFITGIFGMNFKGMP 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHH--HHHHHHTTSTTS-SS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHHhhCCccCCC
Confidence 3333344444444444444444444444444444 344444555554443 899888888888865444
No 322
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=37.71 E-value=1.8e+02 Score=22.18 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHH
Q 004297 664 VRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCL 712 (763)
Q Consensus 664 ~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~ 712 (763)
+..++..|.+.+..++..|.++..++|.+-+ +...++|++.-+.+-
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~---FNESFasfLYGl~mn 48 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSD---FNESFASFLYGLNMN 48 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4566778888888899999999999988877 556666666544443
No 323
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=37.67 E-value=3e+02 Score=24.70 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=53.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEE-eeeeecCCCCCccccEEEEEeeC--C-CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFD--P-CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~-~T~~~~~t~~P~wne~~~~~v~~--~-~~~l~i~V~d~~~~~ 438 (763)
.|.+.=+.-.++|.. +.++.+.||++|.-++... .|........-.=...+.+.+.. + ...+.|.+|+.....
T Consensus 5 ~l~L~~I~l~~iP~f---~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNF---NSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTS---TTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCcc---CCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 444444555677765 3456799999999888776 33333222111111233333332 2 568999999976311
Q ss_pred CCCCCCCCCCCccEEEEEeccccc
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
..++.+.++.+.-.=+.
T Consensus 82 -------~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 -------MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp -------CCCEEEEEEEEEGGGSB
T ss_pred -------cccCeEEEEEEeeeeee
Confidence 15678999999888777
No 324
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=37.24 E-value=2.8e+02 Score=30.19 Aligned_cols=104 Identities=16% Similarity=0.282 Sum_probs=60.5
Q ss_pred CCcEEEEEECCeeeeeeee--CC--CCCC-e---eccEEEEEecCC-----------CCceEEEEEEeCCC-------CC
Q 004297 59 CDPYVEVKMGNYKGTTRHF--EK--KTNP-E---WNQVFAFSKDRI-----------QSSVLEVTVKDKDF-------VK 112 (763)
Q Consensus 59 ~dPyv~v~~~~~~~kT~~~--~~--t~nP-~---Wne~f~f~v~~~-----------~~~~l~i~V~d~~~-------~~ 112 (763)
+.-||+|++.+...+|..+ -. +.+| . --..|+++-.++ ....|+|.||.-.. .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 4559999999965555554 11 2222 1 223455542111 12579999999543 16
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC---CccceEEEEEEEEcc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVWMGT 163 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~~~~ 163 (763)
..+||.+.++|. +.............|..+-...+ .....++++.+...+
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 689999999887 33221111223467998876642 123578888876543
No 325
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.09 E-value=1.4e+02 Score=29.95 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhh
Q 004297 682 VGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYV 720 (763)
Q Consensus 682 ~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~ 720 (763)
..+++..+-.++.++.=+|+.-+..+.+.+++++.+.-+
T Consensus 130 ~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~ 168 (230)
T KOG1792|consen 130 RVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSL 168 (230)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 346677777788888888888888888888888877644
No 326
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.85 E-value=1.2e+02 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004297 666 MRYDRLRSIAGRIQTVVGDLATQ 688 (763)
Q Consensus 666 ~~~~~l~~~~~~vQ~~~~~~a~~ 688 (763)
++++.|-+.+.+.|.-++.+-.+
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544333
No 327
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=36.85 E-value=2e+02 Score=26.32 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhh
Q 004297 660 PSDIVRMRYDRLRSIAGR-IQTVVG-DLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQ 724 (763)
Q Consensus 660 ~~~~~~~~~~~l~~~~~~-vQ~~~~-~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r 724 (763)
+.+++.+|+.+|+++.-. +.+.+. .+......+++++++.- .++.++ ..+.+++++|+-
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g-----~a~Wi~-tTSallLgvPl~ 109 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSG-----KALWIV-TTSALLLGVPLA 109 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-----hhHHHH-HHHHHHHHHHHH
Confidence 568999999999996433 444443 34445556667766543 222222 233445566763
No 328
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=36.52 E-value=12 Score=35.52 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=0.0
Q ss_pred HHHhhcccCchhHHHHHHHHHHHHHHH
Q 004297 692 LQSLLSWRDPRATALFVIFCLIAAIVL 718 (763)
Q Consensus 692 ~~~l~~w~~p~~t~~~~~~l~~~~~~l 718 (763)
+++++.|+||..|..++.++.++-.++
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~ 27 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLF 27 (169)
T ss_dssp ---------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHH
Confidence 468999999999998776666633333
No 329
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=36.50 E-value=1.5e+02 Score=24.63 Aligned_cols=29 Identities=10% Similarity=0.345 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchh
Q 004297 675 AGRIQTVVGDLATQGERLQSLLSWRDPRA 703 (763)
Q Consensus 675 ~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~ 703 (763)
...++..-+.+..-..+++.-+-|+.-..
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~ 68 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555566765433
No 330
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=36.45 E-value=3.4e+02 Score=24.86 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=58.1
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeC------------CCCCeEEEEEE
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE------------PFEEHLILTVE 269 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~------------~~~~~L~i~V~ 269 (763)
|.|+-+.|-+.--. .+.|.|..+++-++.++|+.... .--=.++|.|.|.=.. .+.+.+.|+++
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 44555555443322 33599999999999999998643 3334468988885321 13568889988
Q ss_pred EccCCCCCceeEEEEEeccccc
Q 004297 270 DRVAPNKDEVLGKCMIPLQYVD 291 (763)
Q Consensus 270 d~d~~~~d~~iG~~~i~l~~l~ 291 (763)
...... +..++..+-+..++.
T Consensus 80 Ql~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 80 QLVPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred EEeCCC-CcEEEEEeccccceE
Confidence 865443 778999988888876
No 331
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=33.55 E-value=19 Score=42.21 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=51.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCC
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF 110 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~ 110 (763)
+|.+.+.+.+|..|.. ..+-||...+.. .+.+|+++.+|..|.||++++.++.+ .+...+..++++.
T Consensus 758 ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKST 829 (1112)
T ss_pred ccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhcccc
Confidence 4678999999988753 336788887754 46789999999999999999998865 3445567666654
No 332
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.29 E-value=1.6e+02 Score=25.90 Aligned_cols=23 Identities=9% Similarity=0.390 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhcccCchhHHH
Q 004297 684 DLATQGERLQSLLSWRDPRATAL 706 (763)
Q Consensus 684 ~~a~~~e~~~~l~~w~~p~~t~~ 706 (763)
.+-.-.-+++--+-|.+-+....
T Consensus 75 ~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 75 QFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555678877655443
No 333
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=1.4e+02 Score=26.91 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=29.7
Q ss_pred CchhHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHhhcccCchhHHHHH
Q 004297 660 PSDIVRMRYDRLRSIAG-RIQTVVGDLATQ-GERLQSLLSWRDPRATALFV 708 (763)
Q Consensus 660 ~~~~~~~~~~~l~~~~~-~vQ~~~~~~a~~-~e~~~~l~~w~~p~~t~~~~ 708 (763)
+.+++.+|+..|+++.. ...+.++..++. +.-+++++.++- .+.|++.
T Consensus 40 ~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg-~a~Wi~t 89 (136)
T KOG4111|consen 40 EDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSG-KAAWIAT 89 (136)
T ss_pred cchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhcc-chhHHHH
Confidence 56899999999988644 355666655543 444566665543 3344433
No 334
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.54 E-value=21 Score=40.88 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=56.9
Q ss_pred CCCcEEEEEECCEE-EeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCCC
Q 004297 220 FPEVYVKAQLGNQA-LRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKP 298 (763)
Q Consensus 220 ~~dpyv~v~l~~~~-~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~ 298 (763)
..+||+.+.+.-.. ..+.+.+. +..|.|+++|...+.. ...+.|.|+.......+.....+++-.+++.. ...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~---~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKL---LAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCC-CCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHH---Hhh
Confidence 35888888776432 33444444 9999999999999764 45788888886433334333333333333321 112
Q ss_pred CCceeEEcccccccccccccCCceeceEEEEEEEccC
Q 004297 299 VNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGG 335 (763)
Q Consensus 299 ~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~ 335 (763)
....|..++. .|++...+.+.+.
T Consensus 101 ~~~~w~~~~~--------------~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 101 EQRLWVLIEE--------------LGTLLKPAALTGT 123 (694)
T ss_pred hhhhcccccc--------------ccceeeeecccCc
Confidence 2455766544 4777777766553
No 335
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.62 E-value=2.9e+02 Score=21.92 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004297 664 VRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSW 698 (763)
Q Consensus 664 ~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w 698 (763)
..++.+.+.......+..+..++.-++++.+...|
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777788899999999999988
No 336
>PF14851 FAM176: FAM176 family
Probab=29.54 E-value=94 Score=28.91 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=7.7
Q ss_pred cCCchhhHHHHH
Q 004297 584 WKNPITTVLIHI 595 (763)
Q Consensus 584 W~~p~~s~~~~~ 595 (763)
|++|-+.++.|+
T Consensus 16 ~~~PE~~aLYFv 27 (153)
T PF14851_consen 16 RDNPERFALYFV 27 (153)
T ss_pred HhChHHHHHHHH
Confidence 788887555433
No 337
>PF15202 Adipogenin: Adipogenin
Probab=28.48 E-value=84 Score=24.32 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhccc
Q 004297 608 LPTVFLYLFLIGVWYYR 624 (763)
Q Consensus 608 ~p~~~l~~~~~~~~~y~ 624 (763)
+|+.+++.++|.-.+|.
T Consensus 23 lpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 23 LPVGLLLFLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67666654444333333
No 338
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=26.96 E-value=3.5e+02 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHhhcccc
Q 004297 591 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRW 625 (763)
Q Consensus 591 ~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~~~y~~ 625 (763)
++|+++=+++|-|-.++.|++.|-+++.++..|+.
T Consensus 169 ~lAv~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~~ 203 (263)
T PF14963_consen 169 LLAVFVRLFVCKYLSIFAPFLTLQLAYMGLSKYFP 203 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 34444555667666667788888878777777765
No 339
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=25.59 E-value=1.7e+02 Score=21.72 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhHHHH
Q 004297 676 GRIQTVVGDLATQGERLQSLLSWRDPRATALF 707 (763)
Q Consensus 676 ~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~ 707 (763)
.-+...=.+++.+.+++|....|..|.+..++
T Consensus 7 ~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv 38 (53)
T PF08060_consen 7 ELLDDIDKEINLLHMRLREWYSWHFPELESLV 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHHc
Confidence 33455567899999999999999999998764
No 340
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=25.48 E-value=16 Score=41.00 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=50.5
Q ss_pred cceEEEEEEEccCCCCCccC-CCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeCCC
Q 004297 361 IGVLELGILNAQGLMPMKTK-DGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNCH 436 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~-~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~~~ 436 (763)
.|..-+.++.|.++++.... ...-+.++++...++.+.+||+...++.+|+|||. .+++.+ ....|...|.+++.
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~ 356 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE 356 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc
Confidence 35556677888887653210 11235789999999999999999999999999986 555543 23334444444443
No 341
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=24.48 E-value=1.1e+02 Score=36.23 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=44.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC----Ce----eeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEe
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMG----NY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKD 107 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~----~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d 107 (763)
.++|+++++.++... ..-|-+|.|..+ ++ ...|..+.++.+|.||+...|++. -+....|.|.||-
T Consensus 344 ~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 578888888766432 234667777664 32 234555666889999999999873 3345677888776
Q ss_pred C
Q 004297 108 K 108 (763)
Q Consensus 108 ~ 108 (763)
.
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 4
No 342
>PHA02650 hypothetical protein; Provisional
Probab=24.12 E-value=2.6e+02 Score=22.62 Aligned_cols=16 Identities=25% Similarity=0.188 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhcc
Q 004297 683 GDLATQGERLQSLLSW 698 (763)
Q Consensus 683 ~~~a~~~e~~~~l~~w 698 (763)
+|...++|-+++.++=
T Consensus 18 dDFnnFI~VVkSVLtD 33 (81)
T PHA02650 18 DDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4566677777777654
No 343
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=3.6e+02 Score=25.09 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=42.0
Q ss_pred CCCCcEEEEEE--CCEEEeeee-----------ecCCCC-CccccEEEEEeeC--C--CcEEEEEEEeCCCCCCCCCCCC
Q 004297 384 GTTDAYCVAKY--GQKWVRTRT-----------IIDSPT-PKWNEQYTWEVFD--P--CTVITIGVFDNCHLHGGDKAGG 445 (763)
Q Consensus 384 g~~Dpyv~v~~--~~~~~~T~~-----------~~~t~~-P~wne~~~~~v~~--~--~~~l~i~V~d~~~~~~~~~~~~ 445 (763)
..+|-||+... |+.|.-+.- ..+-.| -+||-.++..... | -..|.+.||-.|.+|
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G------- 96 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG------- 96 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC-------
Confidence 35788888854 666643322 111112 2455444433332 3 358999999998876
Q ss_pred CCCCccEEEEEecc
Q 004297 446 ARDSRIGKVRIRLS 459 (763)
Q Consensus 446 ~~d~~lG~v~i~l~ 459 (763)
+|...|...|.+-
T Consensus 97 -~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 97 -KDCVTGYGMLHIP 109 (187)
T ss_pred -cceeeeeeeEecC
Confidence 8999998877654
No 344
>PHA02844 putative transmembrane protein; Provisional
Probab=22.61 E-value=2.4e+02 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhccc
Q 004297 683 GDLATQGERLQSLLSWR 699 (763)
Q Consensus 683 ~~~a~~~e~~~~l~~w~ 699 (763)
+|.+.++|-+|+.++=.
T Consensus 18 dDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 46677777788877653
No 345
>PHA01159 hypothetical protein
Probab=21.99 E-value=3.8e+02 Score=23.50 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 004297 668 YDRLRSIAGRIQTVVGDLATQGERLQSLLSWRD 700 (763)
Q Consensus 668 ~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~ 700 (763)
|..++.++..-|..++..++..+-+++.|-|-.
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~ 37 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGA 37 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556777888888889999888888888887643
No 346
>PHA02975 hypothetical protein; Provisional
Probab=21.97 E-value=2.7e+02 Score=21.87 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhcc
Q 004297 683 GDLATQGERLQSLLSW 698 (763)
Q Consensus 683 ~~~a~~~e~~~~l~~w 698 (763)
+|.++++|-+|+.++=
T Consensus 18 dDF~nFI~vVksVLtd 33 (69)
T PHA02975 18 SDFEDFIDTIMHVLTG 33 (69)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4667777777777754
No 347
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.71 E-value=2.9e+02 Score=22.32 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004297 667 RYDRLRSIAGRIQTVVG 683 (763)
Q Consensus 667 ~~~~l~~~~~~vQ~~~~ 683 (763)
+++.|.+.+.+.|.-++
T Consensus 43 ~L~~L~~~a~rm~eRI~ 59 (75)
T PF06667_consen 43 RLQELYEQAERMEERIE 59 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 348
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.66 E-value=1.8e+02 Score=26.30 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004297 665 RMRYDRLRSIAGRIQTVVGDLATQGERLQSLL 696 (763)
Q Consensus 665 ~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~ 696 (763)
.++++.|...+.++|..++++...+|++.+++
T Consensus 86 L~kv~els~~L~~~~~lL~~~v~~ie~LN~~L 117 (131)
T PF10158_consen 86 LEKVNELSQQLSRCQSLLNQTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678888899999999999999999999985
Done!