BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004298
(763 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ--PS 118
GK + S+ + PDGK +A G DG I + D+ GKLL +L+ H + + L + D+Q +
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 119 KNDFGNIPTYE 129
+D G I Y+
Sbjct: 224 ASDDGYIKIYD 234
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 54 RLWTISPGKSVTS----------LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103
RLW + GK + S L + PD + +A G G + + VE+GK SL +
Sbjct: 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164
Query: 104 VAVVCLNWEEDAQ 116
++ + + D +
Sbjct: 165 KFILSIAYSPDGK 177
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV 107
+ SL + PD + + +DG I ++DV++ L +L H V+
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
+S ++ ++P+ +A A++D + L N Q L T++ SV + +RPDG+ IA
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASA 280
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+D T+ L + NG+LL++L H+ +V + + D Q
Sbjct: 281 SDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 316
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
+S ++ ++P+ +A A++D + L N Q L T++ SV + + PDG+ IA
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 526
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+D T+ L + NG+LL++L H+ +V + + D Q
Sbjct: 527 SDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 562
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
+S ++ ++P+ +A A++D + L N Q L T++ SV + + PDG+ IA
Sbjct: 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+D T+ L + NG+LL++L H+ +V + + D Q
Sbjct: 158 SDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 30 NPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLH 88
+P+ +A A++D + L N Q L T++ SV + + PDG+ IA +D T+ L
Sbjct: 312 SPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Query: 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+ NG+LL++L H+ +V + + D Q
Sbjct: 372 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 398
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
+S ++ ++P+ +A A++D + L N Q L T++ SV + + PDG+ IA
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 75
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+D T+ L + NG+LL++L H+ +V + + D Q
Sbjct: 76 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 111
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 30 NPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLH 88
+P+ +A A++D + L N Q L T++ SV + + PDG+ IA +D T+ L
Sbjct: 66 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+ NG+LL++L H+ +V + + D Q
Sbjct: 126 N-RNGQLLQTLTGHSSSVWGVAFSPDGQ 152
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 30 NPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLH 88
+P+ +A A++D + L N Q L T++ SV + + PDG+ IA +D T+ L
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+ NG+LL++L H+ +V + + D Q
Sbjct: 495 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 521
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 30 NPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLH 88
+P+ +A A++D + L N Q L T++ SV + + PDG+ IA +D T+ L
Sbjct: 148 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Query: 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+ NG+LL++L H+ +V + + D Q
Sbjct: 208 N-RNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
+S ++ ++P+ +A A++D + L N Q L T++ SV + + PD + IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASA 444
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+D T+ L + NG+LL++L H+ +V + + D Q
Sbjct: 445 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFG 123
V S+ W DG ++VGL +G + ++DVE+ LR++ H V CL+W S + G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 124 NIPTYEDR 131
I ++ R
Sbjct: 197 AIHHHDVR 204
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119
PG+ ++S+ W +G +AVG + L DV+ K LR++ SH+ V L+W S
Sbjct: 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG 205
Query: 120 NDFGNIPTYEDRTS 133
+ G+I ++ R +
Sbjct: 206 SRSGHIHHHDVRVA 219
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119
PG+ ++S+ W +G +AVG + L DV+ K LR++ SH+ V L+W S
Sbjct: 157 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG 216
Query: 120 NDFGNIPTYEDRTS 133
+ G+I ++ R +
Sbjct: 217 SRSGHIHHHDVRVA 230
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119
PG+ ++S+ W +G +AVG + L DV+ K LR++ SH+ V L+W S
Sbjct: 66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG 125
Query: 120 NDFGNIPTYEDRTS 133
+ G+I ++ R +
Sbjct: 126 SRSGHIHHHDVRVA 139
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 4 DEAMRVLPFQLQFDKPVASQIKIAEWNP-EKDLLAMATEDSKILLHRF-----NWQRLWT 57
D +++L ++ D V+S WNP ++ +LA ++S L R ++ W
Sbjct: 33 DGFVKILKEIVKLDNIVSST-----WNPLDESILAYGEKNSVARLARIVETDQEGKKYWK 87
Query: 58 I--------------SPGKS---VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100
+ S GK+ VT L W DG +I G+E+G + L + + G LL L
Sbjct: 88 LTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN 146
Query: 101 SHTVAVVCLNWEEDA 115
H +V + W +D
Sbjct: 147 FHRAPIVSVKWNKDG 161
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111
+ S+C+ PDGK +A G ED I + D+EN K++ L+ H + L++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 17 ALKFTLAGHTKAVSSVKFS---PNGEWLAASSADKLI--------KIWGAYDGKFEKTIS 65
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 107
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 103 TVAVVCL 109
C+
Sbjct: 237 KNEKYCI 243
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKI-LLHRFNWQRLWTISPGK-SVTS 66
L F L S +K + P + LA ++ D I + ++ + TIS K ++
Sbjct: 17 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
+ W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 107
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 103 TVAVVCL 109
C+
Sbjct: 237 KNEKYCI 243
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKI-LLHRFNWQRLWTISPGK-SVTS 66
L F L S +K + P + LA ++ D I + ++ + TIS K ++
Sbjct: 17 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
+ W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 107
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 103 TVAVVCL 109
C+
Sbjct: 237 KNEKYCI 243
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPD---- 72
D P S +K + P + AT D+ + +LW S GK + + +
Sbjct: 194 DNPPVSFVKFS---PNGKYILAATLDNTL--------KLWDYSKGKCLKTYTGHKNEKYC 242
Query: 73 ---------GKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFG 123
GK I G ED + + +++ ++++ L+ HT V+ P++N
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI----STACHPTENIIA 298
Query: 124 NIPTYEDRTSRFF 136
+ D+T + F
Sbjct: 299 SAALENDKTIKLF 311
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 31 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 79
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 131
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 70 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 121
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 103 TVAVVCL 109
C+
Sbjct: 251 KNEKYCI 257
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 13 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 61
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 113
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 52 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 103
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 104 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 161
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 103 TVAVVCL 109
C+
Sbjct: 233 KNEKYCI 239
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 20 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 68
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 110
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 103 TVAVVCL 109
C+
Sbjct: 240 KNEKYCI 246
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 15 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 63
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 115
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 54 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 105
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 106 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 163
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 103 TVAVVCL 109
C+
Sbjct: 235 KNEKYCI 241
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 19 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 67
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 119
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 58 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 109
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 110 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 167
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 103 TVAVVCL 109
C+
Sbjct: 239 KNEKYCI 245
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 14 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 62
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 114
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 104
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 103 TVAVVCL 109
C+
Sbjct: 234 KNEKYCI 240
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 14 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 62
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 114
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 104
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 103 TVAVVCL 109
C+
Sbjct: 234 KNEKYCI 240
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKI-LLHRFNWQRLWTISPGK-SVTS 66
L F L S +K + P + LA ++ D I + ++ + TIS K ++
Sbjct: 20 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
+ W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 110
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 103 TVAVVCL 109
C+
Sbjct: 240 KNEKYCI 246
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 10 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 58
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 110
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 49 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 100
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 101 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 158
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 103 TVAVVCL 109
C+
Sbjct: 230 KNEKYCI 236
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 20 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 68
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 110
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 103 TVAVVCL 109
C+
Sbjct: 240 KNEKYCI 246
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKI-LLHRFNWQRLWTISPGK-SVTS 66
L F L S +K + P + LA ++ D I + ++ + TIS K ++
Sbjct: 38 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
+ W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 138
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 77 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 128
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 103 TVAVVCL 109
C+
Sbjct: 258 KNEKYCI 264
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKI-LLHRFNWQRLWTISPGK-SVTS 66
L F L S +K + P + LA ++ D I + ++ + TIS K ++
Sbjct: 36 ALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
+ W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 136
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 12 FQLQFDKPVASQ---IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSL- 67
+ +F+K ++ I W+ + +LL A++D + ++W +S GK + +L
Sbjct: 75 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL--------KIWDVSSGKCLKTLK 126
Query: 68 --------C-WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
C + P I G D ++ + DV+ GK L++L +H+ V +++ D
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 103 TVAVVCL 109
C+
Sbjct: 256 KNEKYCI 262
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 17 ALMFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 65
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK------ 62
L F L S +K + P + LA ++ D I ++W GK
Sbjct: 17 ALMFTLAGHTKAVSSVKFS---PNGEWLASSSADKLI--------KIWGAYDGKFEKTIS 65
Query: 63 ----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
++ + W D + +D T+ + DV +GK L++LK H+ V C N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 54 RLWTISPGKSVTSLC-----------WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102
R+W + G+ + +L + P+GK I D T+ L D GK L++ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 103 TVAVVCL 109
C+
Sbjct: 237 KNEKYCI 243
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
K+V+S+ + P+G+ +A D I + +GK +++ H + + + W D+
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 28 EWNPE-KDLLAMATEDSKILLHRFN--WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGT 84
+WNP ++A+ D I + + + T+ +VTS+CW P GK +AVG ++GT
Sbjct: 156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT 215
Query: 85 I 85
+
Sbjct: 216 V 216
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 28 EWNPE-KDLLAMATEDSKILLHRFN--WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGT 84
+WNP ++A+ D I + + + T+ +VTS+CW P GK +AVG ++GT
Sbjct: 156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT 215
Query: 85 I 85
+
Sbjct: 216 V 216
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 28 EWNPE-KDLLAMATEDSKILLHRFN--WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGT 84
+WNP ++A+ D I + + + T+ +VTS+CW P GK +AVG ++GT
Sbjct: 156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT 215
Query: 85 I 85
+
Sbjct: 216 V 216
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 28 EWNPEKDLLAMATEDSKILLHR---------FNWQRLWTISPGKSVTSLCWRPDGKAIAV 78
+NP+ L A D I+L+ F L ++ SV L W PDG IA
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256
Query: 79 GLEDGTITLHDVENGKLLRSL 99
D TI + +V K+ +++
Sbjct: 257 ASADKTIKIWNVATLKVEKTI 277
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 21 ASQIKIAEWNPEKDLLAMA-TEDSKILLHRFNWQR----LWTISPGKSVTSLCWRPDGKA 75
A+Q+ +P KD + ++ +ED++ILL + + +PG TSL W P
Sbjct: 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE 228
Query: 76 IAV-GLEDGTITLHDVENGKLLRSLKSHTVAVVCL 109
+ V G E+GT++L D ++ + S H+ V L
Sbjct: 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 82 DGTITLHDVENGKLLRSLKSHTVAVVCLN 110
DGT L DVE+G+LL+S H V+CL+
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLD 203
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 68 CWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE 113
C + D + I GL D TI + D + R L HT +V+CL ++E
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 183
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 58 ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCL 109
I G + + LC + D + I G D T+ + DV G++L +L H AV+ L
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 54 RLWTISPGKSVTSL--------CWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVA 105
++W S + V +L C + + + G D TI L D+E G LR L+ H
Sbjct: 279 KVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 338
Query: 106 VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140
V C+ ++ S G I + D + P AP
Sbjct: 339 VRCIRFDNKRIVSGAYDGKIKVW-DLVAALDPRAP 372
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV 104
V+++ PDG A G +DG + L D+ GK L SL++++V
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE 112
G + T C K + G D T+ + D+E G+ L L H AV C+ ++
Sbjct: 197 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 248
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE 81
+ + A+ + +L D K+L FN QR + +T L + P G+A+ +
Sbjct: 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ 159
Query: 82 DGTITLHDVENGKLLRSLKSHTVAVV 107
D + + V++G R+L H V
Sbjct: 160 DMQLKIWSVKDGSNPRTLIGHRATVT 185
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE 81
+ + A+ + +L D K+L FN QR + +T L + P G+A+ +
Sbjct: 97 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ 156
Query: 82 DGTITLHDVENGKLLRSLKSHTVAVV 107
D + + V++G R+L H V
Sbjct: 157 DMQLKIWSVKDGSNPRTLIGHRATVT 182
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 71 PDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115
PD K DG I + D+ N L+R + HT C++ D
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSK-ILLHRFNWQRLWTISPGKSVTSLC-WRPDGKAIAVG 79
++I W + LL A++D K I+ + ++ I S C + P G +A G
Sbjct: 67 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 126
Query: 80 LEDGTITLHDVE----NGKLLRSLKSHTVAVVCLNWEEDAQ 116
D ++++++ N ++ R L HT + C + +D Q
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 167
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSK-ILLHRFNWQRLWTISPGKSVTSLC-WRPDGKAIAVG 79
++I W + LL A++D K I+ + ++ I S C + P G +A G
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 80 LEDGTITLHDVE----NGKLLRSLKSHTVAVVCLNWEEDAQ 116
D ++++++ N ++ R L HT + C + +D Q
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSK-ILLHRFNWQRLWTISPGKSVTSLC-WRPDGKAIAVG 79
++I W + LL A++D K I+ + ++ I S C + P G +A G
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 80 LEDGTITLHDVE----NGKLLRSLKSHTVAVVCLNWEEDAQ 116
D ++++++ N ++ R L HT + C + +D Q
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 82 DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYE--DRTSRFFPPA 139
D TI + D+ENG+L+ +L+ HT V L + S G+I ++ D + +F
Sbjct: 331 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 390
Query: 140 PRIPQMPGLVSGDTGFTDDSEDSFR--ELANSSHQRFSILCSGDKDGSICF 188
+ + D SE+ F L + +IL D+ S+ F
Sbjct: 391 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 441
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSK-ILLHRFNWQRLWTISPGKSVTSLC-WRPDGKAIAVG 79
++I W + LL A++D K I+ + ++ I S C + P G +A G
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 80 LEDGTITLHDVE----NGKLLRSLKSHTVAVVCLNWEEDAQ 116
D ++++++ N ++ R L HT + C + +D Q
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSK-ILLHRFNWQRLWTISPGKSVTSLC-WRPDGKAIAVG 79
++I W + LL A++D K I+ + ++ I S C + P G +A G
Sbjct: 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 80 LEDGTITLHDVE----NGKLLRSLKSHTVAVVCLNWEEDAQ 116
D ++++++ N ++ R L HT + C + +D Q
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
N RL +V C+ DG+ IA D T+ + E G+ L +K+H V+C
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 111 WEED 114
+ D
Sbjct: 672 FSSD 675
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
N RL +V C+ DG+ IA D T+ + E G+ L +K+H V+C
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 111 WEED 114
+ D
Sbjct: 671 FSTD 674
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
N RL +V C+ DG+ IA D T+ + E G+ L +K+H V+C
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 111 WEED 114
+ D
Sbjct: 665 FSSD 668
>pdb|2K8E|A Chain A, Solution Nmr Structure Of Protein Of Unknown Function Yegp
From E. Coli. Ontario Center For Structural Proteomics
Target Ec0640_1_123 Northeast Structural Genomics
Consortium Target Et102
Length = 130
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 661 LLLNEACTSSDSGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVFYLQMGNAKVRI 720
+L +E TS S E + VR S SP + +E + FY + A +I
Sbjct: 43 ILTSELYTSKTSAEKGIASVR---------SNSPQEERYEKKTASNGKFYFNLKAANHQI 93
Query: 721 IPHSVVAPLAVSASRGVASVYA 742
I S + A S G+ASV A
Sbjct: 94 IGSSQMYATAQSRETGIASVKA 115
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV 106
VT + + P + ED TI + D E G R+LK HT +V
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,335,148
Number of Sequences: 62578
Number of extensions: 860095
Number of successful extensions: 2077
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1905
Number of HSP's gapped (non-prelim): 195
length of query: 763
length of database: 14,973,337
effective HSP length: 106
effective length of query: 657
effective length of database: 8,340,069
effective search space: 5479425333
effective search space used: 5479425333
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)