Query 004298
Match_columns 763
No_of_seqs 434 out of 2602
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 21:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4640 Anaphase-promoting com 100.0 1.6E-61 3.5E-66 518.7 34.6 602 16-668 15-650 (665)
2 PF12896 Apc4: Anaphase-promot 100.0 6.8E-43 1.5E-47 353.5 27.1 208 257-464 2-210 (210)
3 KOG0271 Notchless-like WD40 re 99.9 1.9E-23 4.2E-28 212.7 17.0 214 22-265 116-399 (480)
4 KOG0271 Notchless-like WD40 re 99.9 3.3E-22 7.2E-27 203.7 18.4 236 8-265 147-441 (480)
5 KOG0272 U4/U6 small nuclear ri 99.9 7.1E-22 1.5E-26 204.1 13.3 205 22-243 218-452 (459)
6 KOG0263 Transcription initiati 99.8 2.9E-20 6.3E-25 205.9 17.6 191 14-243 448-641 (707)
7 KOG0272 U4/U6 small nuclear ri 99.8 7E-20 1.5E-24 189.4 16.0 203 24-243 178-410 (459)
8 KOG0279 G protein beta subunit 99.8 6E-19 1.3E-23 174.0 21.8 203 23-243 65-305 (315)
9 KOG0645 WD40 repeat protein [G 99.8 2.4E-18 5.1E-23 169.1 21.2 156 21-191 14-179 (312)
10 KOG0273 Beta-transducin family 99.8 1.1E-18 2.3E-23 182.8 18.9 204 22-243 236-474 (524)
11 KOG0275 Conserved WD40 repeat- 99.8 2.7E-19 5.9E-24 178.7 13.6 204 23-243 215-459 (508)
12 KOG0645 WD40 repeat protein [G 99.8 4.8E-18 1E-22 167.0 21.0 204 24-242 64-301 (312)
13 KOG0316 Conserved WD40 repeat- 99.8 2.3E-18 5E-23 165.9 18.2 186 22-243 18-205 (307)
14 KOG0284 Polyadenylation factor 99.8 3.6E-19 7.8E-24 183.3 13.2 207 16-243 137-372 (464)
15 KOG0286 G-protein beta subunit 99.8 8.9E-18 1.9E-22 166.6 22.4 208 18-243 52-295 (343)
16 KOG0291 WD40-repeat-containing 99.8 5.5E-18 1.2E-22 186.0 22.6 206 22-243 308-542 (893)
17 KOG0279 G protein beta subunit 99.8 8.4E-18 1.8E-22 166.0 21.5 221 18-265 12-264 (315)
18 KOG0266 WD40 repeat-containing 99.8 2.1E-17 4.6E-22 186.6 22.8 192 21-243 159-356 (456)
19 KOG0291 WD40-repeat-containing 99.8 1.4E-17 3.1E-22 182.7 20.4 216 22-267 351-616 (893)
20 KOG0263 Transcription initiati 99.8 5E-18 1.1E-22 188.3 15.8 186 22-244 379-600 (707)
21 KOG0647 mRNA export protein (c 99.8 8.8E-17 1.9E-21 160.3 22.4 242 15-265 21-339 (347)
22 PTZ00421 coronin; Provisional 99.8 1.2E-16 2.7E-21 180.3 25.8 187 22-241 76-279 (493)
23 KOG0315 G-protein beta subunit 99.7 7.2E-17 1.6E-21 156.9 19.3 200 34-265 11-247 (311)
24 KOG0315 G-protein beta subunit 99.7 7.6E-17 1.6E-21 156.7 19.2 214 9-243 31-280 (311)
25 KOG0266 WD40 repeat-containing 99.7 1E-16 2.2E-21 181.1 23.2 194 22-243 204-401 (456)
26 KOG0265 U5 snRNP-specific prot 99.7 8.2E-17 1.8E-21 160.5 18.7 205 21-243 47-288 (338)
27 KOG0286 G-protein beta subunit 99.7 2E-16 4.3E-21 157.1 21.2 203 22-242 98-336 (343)
28 KOG0643 Translation initiation 99.7 1.9E-16 4.2E-21 155.3 20.7 223 14-268 7-322 (327)
29 KOG0973 Histone transcription 99.7 7.6E-17 1.6E-21 184.6 20.6 221 23-268 71-360 (942)
30 KOG0273 Beta-transducin family 99.7 9.4E-17 2E-21 168.3 19.1 185 24-243 279-515 (524)
31 KOG0318 WD40 repeat stress pro 99.7 4.8E-16 1.1E-20 164.9 24.2 112 23-140 192-351 (603)
32 KOG0319 WD40-repeat-containing 99.7 2.5E-15 5.3E-20 165.4 28.1 188 22-243 412-611 (775)
33 PLN00181 protein SPA1-RELATED; 99.7 7E-16 1.5E-20 186.7 25.0 206 21-243 483-730 (793)
34 KOG0282 mRNA splicing factor [ 99.7 6.6E-17 1.4E-21 170.2 13.3 155 22-194 215-374 (503)
35 KOG0283 WD40 repeat-containing 99.7 3.5E-16 7.6E-21 175.1 18.9 216 19-266 265-579 (712)
36 KOG0285 Pleiotropic regulator 99.7 4.1E-16 9E-21 158.3 16.5 155 21-192 151-307 (460)
37 PLN00181 protein SPA1-RELATED; 99.7 2.1E-15 4.5E-20 182.6 25.1 204 22-243 533-785 (793)
38 PTZ00420 coronin; Provisional 99.7 3.8E-15 8.2E-20 169.2 24.8 159 21-193 74-249 (568)
39 KOG0292 Vesicle coat complex C 99.7 2.7E-16 5.9E-21 175.0 14.8 208 21-245 9-274 (1202)
40 KOG0292 Vesicle coat complex C 99.7 2.3E-15 5E-20 167.7 20.5 217 15-243 49-314 (1202)
41 KOG0276 Vesicle coat complex C 99.7 1.9E-15 4.1E-20 163.1 19.2 158 21-195 97-260 (794)
42 KOG0973 Histone transcription 99.7 6.6E-16 1.4E-20 177.0 16.1 190 23-240 15-238 (942)
43 KOG0284 Polyadenylation factor 99.7 4.6E-16 9.9E-21 160.6 13.0 187 22-243 97-286 (464)
44 cd00200 WD40 WD40 domain, foun 99.7 9.3E-15 2E-19 151.7 22.8 187 22-243 10-199 (289)
45 KOG1446 Histone H3 (Lys4) meth 99.7 1.1E-14 2.4E-19 146.8 21.3 192 21-243 14-209 (311)
46 KOG0295 WD40 repeat-containing 99.7 9.8E-16 2.1E-20 156.3 13.8 202 23-243 110-356 (406)
47 KOG0772 Uncharacterized conser 99.7 2.3E-15 5E-20 159.3 16.6 198 16-245 263-481 (641)
48 KOG0305 Anaphase promoting com 99.6 5E-15 1.1E-19 162.1 19.5 214 21-264 217-462 (484)
49 cd00200 WD40 WD40 domain, foun 99.6 2.5E-14 5.3E-19 148.5 24.0 204 23-243 53-283 (289)
50 KOG1036 Mitotic spindle checkp 99.6 2.9E-14 6.3E-19 143.1 21.8 239 15-263 7-316 (323)
51 KOG0282 mRNA splicing factor [ 99.6 8.1E-16 1.8E-20 162.1 11.2 199 16-241 257-494 (503)
52 KOG0277 Peroxisomal targeting 99.6 2.6E-15 5.7E-20 146.5 13.5 188 22-241 61-254 (311)
53 KOG0293 WD40 repeat-containing 99.6 8.7E-15 1.9E-19 151.3 17.0 215 21-243 224-504 (519)
54 KOG0296 Angio-associated migra 99.6 2.8E-14 6E-19 145.9 20.1 215 23-243 108-390 (399)
55 KOG0296 Angio-associated migra 99.6 7.9E-14 1.7E-18 142.6 22.8 152 22-190 65-218 (399)
56 KOG1407 WD40 repeat protein [F 99.6 2.7E-14 5.8E-19 140.1 18.3 220 23-267 22-276 (313)
57 KOG0310 Conserved WD40 repeat- 99.6 1.2E-14 2.5E-19 153.7 16.6 205 23-245 70-303 (487)
58 KOG0640 mRNA cleavage stimulat 99.6 8.7E-15 1.9E-19 146.2 14.1 205 14-265 109-337 (430)
59 KOG0295 WD40 repeat-containing 99.6 1.1E-14 2.3E-19 148.8 15.0 156 23-195 195-367 (406)
60 KOG0319 WD40-repeat-containing 99.6 6.3E-15 1.4E-19 162.2 14.3 154 16-190 462-617 (775)
61 KOG0276 Vesicle coat complex C 99.6 4.4E-14 9.5E-19 152.6 19.3 207 21-243 13-249 (794)
62 KOG0306 WD40-repeat-containing 99.6 4E-14 8.7E-19 155.9 19.1 199 21-265 454-666 (888)
63 PTZ00421 coronin; Provisional 99.6 3.8E-14 8.3E-19 160.1 19.6 161 22-193 126-291 (493)
64 PTZ00420 coronin; Provisional 99.6 8.4E-14 1.8E-18 158.3 21.5 161 22-193 126-294 (568)
65 KOG1332 Vesicle coat complex C 99.6 5.2E-14 1.1E-18 136.8 16.4 194 22-243 57-278 (299)
66 KOG0285 Pleiotropic regulator 99.6 1.6E-14 3.5E-19 146.8 12.3 167 60-243 150-341 (460)
67 KOG0265 U5 snRNP-specific prot 99.6 1.2E-13 2.6E-18 138.1 18.2 195 21-243 90-330 (338)
68 KOG1273 WD40 repeat protein [G 99.6 9.5E-14 2.1E-18 139.3 16.7 191 24-245 26-220 (405)
69 KOG0278 Serine/threonine kinas 99.6 3.7E-14 8E-19 138.1 13.2 201 11-264 94-298 (334)
70 KOG0772 Uncharacterized conser 99.6 9.4E-14 2E-18 147.2 17.3 208 22-241 168-429 (641)
71 KOG0275 Conserved WD40 repeat- 99.5 9E-15 1.9E-19 146.6 8.5 112 23-140 265-379 (508)
72 KOG0299 U3 snoRNP-associated p 99.5 7.1E-14 1.5E-18 146.8 14.7 202 22-242 203-446 (479)
73 KOG0288 WD40 repeat protein Ti 99.5 1.6E-14 3.5E-19 149.6 9.8 215 22-268 176-422 (459)
74 KOG2096 WD40 repeat protein [G 99.5 3E-13 6.6E-18 135.9 18.5 158 20-193 85-309 (420)
75 KOG0267 Microtubule severing p 99.5 1.3E-14 2.8E-19 159.2 8.9 186 23-243 72-260 (825)
76 KOG0281 Beta-TrCP (transducin 99.5 1.2E-13 2.6E-18 139.9 15.1 187 21-221 197-426 (499)
77 KOG0318 WD40 repeat stress pro 99.5 2.9E-13 6.3E-18 144.1 18.4 197 23-265 61-267 (603)
78 KOG0310 Conserved WD40 repeat- 99.5 7.9E-14 1.7E-18 147.5 13.7 204 22-243 27-260 (487)
79 KOG0289 mRNA splicing factor [ 99.5 3.2E-13 6.9E-18 140.7 17.7 153 22-190 304-460 (506)
80 KOG0269 WD40 repeat-containing 99.5 4.5E-14 9.7E-19 156.2 11.5 203 24-270 90-303 (839)
81 KOG0277 Peroxisomal targeting 99.5 1.3E-13 2.7E-18 134.9 13.0 154 23-192 106-265 (311)
82 KOG0646 WD40 repeat protein [G 99.5 2.7E-13 5.9E-18 142.7 15.9 206 19-243 79-299 (476)
83 KOG0306 WD40-repeat-containing 99.5 1.8E-13 3.8E-18 150.9 14.2 154 19-191 506-663 (888)
84 KOG0641 WD40 repeat protein [G 99.5 5.3E-12 1.1E-16 121.3 21.6 197 17-243 85-295 (350)
85 KOG0289 mRNA splicing factor [ 99.5 1.9E-12 4.2E-17 135.0 18.7 183 23-241 263-452 (506)
86 KOG0269 WD40 repeat-containing 99.5 3.3E-13 7.2E-18 149.5 13.6 161 15-194 131-298 (839)
87 KOG0300 WD40 repeat-containing 99.5 1E-12 2.2E-17 131.8 15.6 227 22-271 149-436 (481)
88 KOG1407 WD40 repeat protein [F 99.5 5.1E-12 1.1E-16 124.3 20.0 195 22-243 65-294 (313)
89 KOG0313 Microtubule binding pr 99.5 1.7E-12 3.8E-17 133.4 17.4 188 23-243 195-410 (423)
90 KOG0283 WD40 repeat-containing 99.5 7.1E-13 1.5E-17 148.9 14.9 112 21-140 369-482 (712)
91 KOG0299 U3 snoRNP-associated p 99.5 2.1E-12 4.5E-17 135.9 17.4 179 24-221 145-354 (479)
92 KOG0264 Nucleosome remodeling 99.4 2.2E-12 4.7E-17 135.8 16.8 212 24-267 180-408 (422)
93 KOG0639 Transducin-like enhanc 99.4 8.5E-13 1.8E-17 139.4 13.7 188 22-245 466-657 (705)
94 KOG0281 Beta-TrCP (transducin 99.4 7.4E-13 1.6E-17 134.2 12.7 147 22-193 238-429 (499)
95 KOG0294 WD40 repeat-containing 99.4 5E-12 1.1E-16 127.3 18.4 112 21-140 43-158 (362)
96 KOG0303 Actin-binding protein 99.4 1.6E-12 3.4E-17 134.3 14.6 155 22-193 82-250 (472)
97 KOG0308 Conserved WD40 repeat- 99.4 7.6E-13 1.6E-17 144.1 12.7 210 26-243 29-277 (735)
98 KOG0264 Nucleosome remodeling 99.4 1.6E-12 3.4E-17 136.8 14.6 162 22-190 228-402 (422)
99 KOG0640 mRNA cleavage stimulat 99.4 3.5E-12 7.6E-17 127.8 16.3 156 22-194 173-337 (430)
100 KOG0313 Microtubule binding pr 99.4 1.4E-12 3.1E-17 134.0 13.5 150 23-190 262-416 (423)
101 KOG0305 Anaphase promoting com 99.4 2.3E-12 5E-17 141.3 15.8 197 25-241 181-407 (484)
102 KOG0641 WD40 repeat protein [G 99.4 1.9E-11 4.2E-16 117.5 19.9 194 23-243 34-253 (350)
103 KOG1009 Chromatin assembly com 99.4 2.7E-12 5.8E-17 133.2 14.3 109 22-136 66-192 (434)
104 KOG2055 WD40 repeat protein [G 99.4 8.8E-12 1.9E-16 131.1 16.7 215 9-243 248-504 (514)
105 KOG0268 Sof1-like rRNA process 99.4 9.8E-13 2.1E-17 134.4 9.2 152 23-190 189-343 (433)
106 KOG0293 WD40 repeat-containing 99.4 5.5E-12 1.2E-16 130.8 14.5 150 60-243 223-376 (519)
107 KOG2048 WD40 repeat protein [G 99.4 4.8E-11 1E-15 131.0 22.5 219 9-243 13-267 (691)
108 KOG0274 Cdc4 and related F-box 99.4 1.8E-11 4E-16 138.9 20.1 178 22-221 250-439 (537)
109 KOG1445 Tumor-specific antigen 99.4 1.7E-12 3.6E-17 140.4 10.6 113 23-141 629-752 (1012)
110 KOG0302 Ribosome Assembly prot 99.4 5.2E-12 1.1E-16 129.8 13.6 115 16-140 256-379 (440)
111 KOG0302 Ribosome Assembly prot 99.4 1.3E-11 2.9E-16 126.9 15.7 189 23-240 153-366 (440)
112 KOG1009 Chromatin assembly com 99.3 9.5E-12 2.1E-16 129.2 13.8 199 24-239 16-248 (434)
113 KOG0300 WD40 repeat-containing 99.3 6E-12 1.3E-16 126.3 11.8 162 22-200 191-396 (481)
114 KOG0268 Sof1-like rRNA process 99.3 1.3E-11 2.9E-16 126.3 13.6 201 22-243 67-337 (433)
115 KOG2139 WD40 repeat protein [G 99.3 4E-11 8.6E-16 122.8 16.5 185 22-243 99-302 (445)
116 KOG1523 Actin-related protein 99.3 2.7E-11 5.9E-16 122.4 14.9 205 23-245 12-230 (361)
117 KOG0316 Conserved WD40 repeat- 99.3 4.6E-11 1E-15 115.9 15.7 190 21-242 59-291 (307)
118 KOG0643 Translation initiation 99.3 2E-11 4.3E-16 120.5 12.9 114 21-140 52-221 (327)
119 KOG0270 WD40 repeat-containing 99.3 2.7E-11 5.8E-16 127.1 14.6 194 14-239 166-391 (463)
120 KOG1034 Transcriptional repres 99.3 9.6E-11 2.1E-15 118.8 17.5 112 22-139 90-211 (385)
121 KOG0294 WD40 repeat-containing 99.3 9.2E-11 2E-15 118.4 17.1 163 22-194 84-283 (362)
122 KOG4283 Transcription-coupled 99.3 3.5E-11 7.6E-16 120.0 13.4 161 21-190 101-274 (397)
123 KOG1538 Uncharacterized conser 99.3 1.4E-10 3E-15 126.3 19.0 203 6-248 41-290 (1081)
124 KOG1524 WD40 repeat-containing 99.3 1.3E-11 2.9E-16 131.5 10.9 191 34-243 76-278 (737)
125 KOG0288 WD40 repeat protein Ti 99.3 1.9E-11 4.1E-16 127.1 11.7 191 21-242 261-452 (459)
126 KOG4283 Transcription-coupled 99.3 8.6E-11 1.9E-15 117.3 15.8 207 16-243 38-268 (397)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 5.8E-10 1.3E-14 118.3 23.5 152 24-194 33-189 (300)
128 KOG1274 WD40 repeat protein [G 99.3 2E-10 4.4E-15 130.0 20.5 203 23-264 15-263 (933)
129 KOG1446 Histone H3 (Lys4) meth 99.3 7.4E-10 1.6E-14 112.3 22.4 215 7-266 45-265 (311)
130 KOG1063 RNA polymerase II elon 99.3 7.5E-11 1.6E-15 129.6 15.9 159 22-192 526-699 (764)
131 PF08662 eIF2A: Eukaryotic tra 99.3 7.7E-11 1.7E-15 117.5 14.6 115 23-140 61-180 (194)
132 KOG1274 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 131.1 18.2 181 24-242 99-291 (933)
133 KOG0308 Conserved WD40 repeat- 99.3 6.1E-11 1.3E-15 129.5 14.2 157 21-194 117-287 (735)
134 KOG0278 Serine/threonine kinas 99.2 1.2E-10 2.5E-15 114.0 14.3 154 21-192 143-297 (334)
135 KOG0321 WD40 repeat-containing 99.2 2E-10 4.4E-15 125.2 17.6 167 23-194 102-303 (720)
136 KOG0274 Cdc4 and related F-box 99.2 2.2E-10 4.8E-15 130.1 18.5 190 23-265 210-402 (537)
137 KOG0270 WD40 repeat-containing 99.2 3.5E-11 7.6E-16 126.3 10.5 158 21-193 243-405 (463)
138 KOG0301 Phospholipase A2-activ 99.2 1.2E-10 2.7E-15 128.1 15.1 118 23-148 16-139 (745)
139 KOG0771 Prolactin regulatory e 99.2 9.7E-11 2.1E-15 122.6 13.7 185 25-242 148-345 (398)
140 KOG2919 Guanine nucleotide-bin 99.2 1.9E-10 4.1E-15 116.4 15.2 157 24-193 161-328 (406)
141 KOG1539 WD repeat protein [Gen 99.2 5E-10 1.1E-14 125.6 19.7 186 22-243 449-639 (910)
142 KOG1538 Uncharacterized conser 99.2 1.2E-10 2.6E-15 126.9 13.8 155 23-200 14-170 (1081)
143 KOG2106 Uncharacterized conser 99.2 8.9E-10 1.9E-14 117.2 19.4 198 22-241 408-616 (626)
144 KOG0301 Phospholipase A2-activ 99.2 3.5E-10 7.6E-15 124.5 16.8 202 27-265 64-290 (745)
145 KOG0267 Microtubule severing p 99.2 3.4E-11 7.3E-16 132.8 8.9 186 21-223 28-226 (825)
146 KOG0646 WD40 repeat protein [G 99.2 3.9E-10 8.5E-15 119.2 16.3 152 61-243 81-239 (476)
147 KOG0647 mRNA export protein (c 99.2 6.1E-10 1.3E-14 111.9 16.8 163 22-193 73-282 (347)
148 KOG2445 Nuclear pore complex c 99.2 2.7E-09 5.9E-14 107.5 21.2 111 24-140 16-145 (361)
149 KOG1310 WD40 repeat protein [G 99.2 2.1E-10 4.5E-15 122.9 14.0 214 22-243 51-295 (758)
150 KOG2055 WD40 repeat protein [G 99.2 7.9E-10 1.7E-14 116.7 17.0 225 17-287 209-441 (514)
151 KOG4328 WD40 protein [Function 99.2 3.2E-10 7E-15 119.5 14.1 197 18-243 183-391 (498)
152 KOG2394 WD40 protein DMR-N9 [G 99.2 2E-10 4.3E-15 123.1 12.4 91 23-113 292-384 (636)
153 KOG1332 Vesicle coat complex C 99.2 1.2E-10 2.7E-15 113.6 9.8 155 22-190 103-284 (299)
154 KOG1007 WD repeat protein TSSC 99.2 1E-09 2.2E-14 109.5 16.3 203 22-241 124-350 (370)
155 KOG1445 Tumor-specific antigen 99.2 2.1E-10 4.6E-15 124.4 12.1 191 19-243 579-786 (1012)
156 KOG0321 WD40 repeat-containing 99.1 1.3E-09 2.9E-14 118.9 16.5 211 25-263 53-301 (720)
157 KOG4378 Nuclear protein COP1 [ 99.1 5.1E-10 1.1E-14 118.6 12.8 206 23-243 36-272 (673)
158 KOG1539 WD repeat protein [Gen 99.1 2.3E-10 4.9E-15 128.2 10.4 153 22-192 494-648 (910)
159 KOG1408 WD40 repeat protein [F 99.1 8.3E-10 1.8E-14 121.4 14.4 214 22-264 460-714 (1080)
160 KOG2106 Uncharacterized conser 99.1 1.8E-08 3.9E-13 107.5 22.9 211 23-243 202-469 (626)
161 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 8.8E-09 1.9E-13 109.2 20.0 171 33-241 1-176 (300)
162 PF08662 eIF2A: Eukaryotic tra 99.1 3.7E-09 7.9E-14 105.5 15.4 155 26-199 10-186 (194)
163 KOG4378 Nuclear protein COP1 [ 99.1 3.4E-09 7.5E-14 112.5 15.6 183 16-232 116-304 (673)
164 KOG0303 Actin-binding protein 99.1 3.5E-09 7.6E-14 109.8 15.4 158 23-192 133-294 (472)
165 KOG0290 Conserved WD40 repeat- 99.0 5.8E-09 1.3E-13 104.4 15.5 111 22-140 97-228 (364)
166 KOG2096 WD40 repeat protein [G 99.0 2.9E-09 6.3E-14 107.6 13.5 201 16-241 182-393 (420)
167 KOG2110 Uncharacterized conser 99.0 1.4E-08 3.1E-13 104.9 18.5 123 11-139 119-248 (391)
168 KOG1408 WD40 repeat protein [F 99.0 3.2E-09 6.9E-14 116.9 14.6 194 36-243 395-663 (1080)
169 PRK01742 tolB translocation pr 99.0 1.1E-08 2.3E-13 115.4 19.4 182 23-243 205-393 (429)
170 KOG0307 Vesicle coat complex C 99.0 8.3E-10 1.8E-14 128.1 10.4 161 21-193 116-285 (1049)
171 KOG2048 WD40 repeat protein [G 99.0 7.8E-09 1.7E-13 113.9 17.2 163 19-192 67-233 (691)
172 KOG1273 WD40 repeat protein [G 99.0 9.7E-09 2.1E-13 103.8 16.5 158 24-190 68-278 (405)
173 KOG0639 Transducin-like enhanc 99.0 1E-09 2.2E-14 116.6 9.2 182 23-242 511-695 (705)
174 KOG0642 Cell-cycle nuclear pro 99.0 5.2E-09 1.1E-13 113.2 14.4 112 23-140 296-427 (577)
175 PRK02889 tolB translocation pr 99.0 1.9E-08 4.1E-13 113.2 19.0 187 22-243 196-392 (427)
176 KOG0650 WD40 repeat nucleolar 99.0 2.8E-08 6E-13 108.1 19.1 115 22-140 401-555 (733)
177 PRK03629 tolB translocation pr 99.0 5.1E-08 1.1E-12 109.7 21.2 99 23-122 200-305 (429)
178 PRK05137 tolB translocation pr 98.9 6.2E-08 1.3E-12 109.5 21.6 114 23-140 203-323 (435)
179 KOG1587 Cytoplasmic dynein int 98.9 1E-07 2.2E-12 107.9 21.9 215 22-278 243-531 (555)
180 KOG0307 Vesicle coat complex C 98.9 5.7E-09 1.2E-13 121.3 11.8 158 22-192 65-240 (1049)
181 KOG0644 Uncharacterized conser 98.9 3.8E-09 8.3E-14 118.3 9.6 107 23-139 192-300 (1113)
182 KOG1007 WD repeat protein TSSC 98.9 1.2E-08 2.5E-13 102.1 11.5 160 23-190 172-359 (370)
183 PRK04922 tolB translocation pr 98.9 7.8E-08 1.7E-12 108.5 19.6 99 23-122 205-310 (433)
184 KOG1034 Transcriptional repres 98.9 1.9E-09 4E-14 109.6 5.5 202 21-243 135-375 (385)
185 KOG2919 Guanine nucleotide-bin 98.9 1E-07 2.3E-12 96.8 17.8 188 24-241 52-270 (406)
186 KOG2445 Nuclear pore complex c 98.9 1.2E-07 2.5E-12 96.0 17.9 158 22-192 60-256 (361)
187 PRK11028 6-phosphogluconolacto 98.9 1.8E-07 4E-12 101.6 21.3 204 21-263 79-304 (330)
188 KOG0649 WD40 repeat protein [G 98.9 1.6E-07 3.4E-12 92.1 17.7 114 15-141 60-188 (325)
189 KOG2139 WD40 repeat protein [G 98.9 1.7E-07 3.8E-12 96.5 18.8 203 22-243 141-367 (445)
190 PF12894 Apc4_WD40: Anaphase-p 98.8 8E-09 1.7E-13 76.8 5.6 46 12-57 2-47 (47)
191 KOG1036 Mitotic spindle checkp 98.8 5.4E-08 1.2E-12 98.5 13.4 167 15-193 92-263 (323)
192 KOG1188 WD40 repeat protein [G 98.8 8.6E-08 1.9E-12 98.2 14.8 184 34-243 41-234 (376)
193 KOG1523 Actin-related protein 98.8 6.9E-08 1.5E-12 98.1 13.9 167 16-193 54-237 (361)
194 KOG2110 Uncharacterized conser 98.8 3.9E-07 8.5E-12 94.4 19.5 99 21-122 87-192 (391)
195 PRK11028 6-phosphogluconolacto 98.8 1.2E-06 2.5E-11 95.3 23.2 197 22-241 35-247 (330)
196 KOG0650 WD40 repeat nucleolar 98.8 8.9E-08 1.9E-12 104.2 13.8 198 13-243 517-727 (733)
197 COG2319 FOG: WD40 repeat [Gene 98.7 6.9E-07 1.5E-11 97.4 20.9 187 23-242 111-305 (466)
198 KOG4328 WD40 protein [Function 98.7 8.8E-08 1.9E-12 101.4 12.9 156 22-192 235-399 (498)
199 KOG0322 G-protein beta subunit 98.7 2.1E-08 4.5E-13 99.3 7.1 110 22-138 206-322 (323)
200 KOG1963 WD40 repeat protein [G 98.7 2.3E-07 5.1E-12 105.5 16.4 158 24-191 208-374 (792)
201 KOG2394 WD40 protein DMR-N9 [G 98.7 3.6E-08 7.9E-13 106.0 8.6 113 22-140 220-363 (636)
202 TIGR02800 propeller_TolB tol-p 98.7 9.2E-07 2E-11 99.3 20.5 99 23-122 191-296 (417)
203 KOG4227 WD40 repeat protein [G 98.7 9.6E-08 2.1E-12 98.9 10.9 157 22-194 57-227 (609)
204 KOG2111 Uncharacterized conser 98.7 6E-07 1.3E-11 91.4 16.2 109 26-140 139-257 (346)
205 PRK00178 tolB translocation pr 98.7 1.4E-06 3.1E-11 98.3 21.1 99 23-122 200-305 (430)
206 KOG0642 Cell-cycle nuclear pro 98.7 2.5E-07 5.5E-12 100.4 13.8 161 9-193 335-562 (577)
207 COG2319 FOG: WD40 repeat [Gene 98.7 6.5E-07 1.4E-11 97.6 17.3 155 22-193 156-315 (466)
208 KOG0290 Conserved WD40 repeat- 98.6 3E-07 6.4E-12 92.4 12.7 163 19-195 148-321 (364)
209 KOG1063 RNA polymerase II elon 98.6 2.3E-07 4.9E-12 102.8 13.0 163 23-191 574-762 (764)
210 KOG1310 WD40 repeat protein [G 98.6 1.6E-07 3.6E-12 101.1 11.4 126 60-193 49-179 (758)
211 PRK04792 tolB translocation pr 98.6 1.3E-06 2.8E-11 98.9 19.6 99 23-122 219-324 (448)
212 KOG1517 Guanine nucleotide bin 98.6 4.6E-07 9.9E-12 104.5 15.0 194 25-242 1169-1372(1387)
213 KOG0771 Prolactin regulatory e 98.6 3.1E-07 6.8E-12 96.7 12.6 155 65-244 148-304 (398)
214 PRK01029 tolB translocation pr 98.6 2.6E-06 5.7E-11 95.7 20.3 99 24-122 187-299 (428)
215 KOG1524 WD40 repeat-containing 98.6 1.7E-07 3.6E-12 100.8 9.6 99 22-122 105-245 (737)
216 KOG2111 Uncharacterized conser 98.6 7.5E-06 1.6E-10 83.6 20.2 165 5-193 82-257 (346)
217 KOG1587 Cytoplasmic dynein int 98.6 3.3E-06 7.2E-11 95.8 19.7 211 23-241 182-461 (555)
218 PRK01742 tolB translocation pr 98.5 6.1E-07 1.3E-11 101.2 13.5 144 24-190 250-399 (429)
219 KOG1272 WD40-repeat-containing 98.5 1.4E-07 3.1E-12 99.9 6.2 113 23-141 211-325 (545)
220 COG4946 Uncharacterized protei 98.5 2E-05 4.4E-10 84.1 21.9 117 22-140 360-478 (668)
221 KOG2321 WD40 repeat protein [G 98.5 3.1E-06 6.8E-11 92.1 16.2 165 22-194 52-260 (703)
222 KOG0974 WD-repeat protein WDR6 98.5 6.3E-07 1.4E-11 103.7 11.4 146 26-191 138-287 (967)
223 PRK04043 tolB translocation pr 98.5 2.1E-05 4.5E-10 88.0 22.8 98 24-122 190-295 (419)
224 PRK05137 tolB translocation pr 98.5 9.7E-06 2.1E-10 91.6 20.1 161 43-241 182-353 (435)
225 PRK03629 tolB translocation pr 98.5 3.4E-06 7.5E-11 95.0 16.4 145 23-185 244-396 (429)
226 KOG1963 WD40 repeat protein [G 98.5 9.7E-06 2.1E-10 92.6 19.7 111 24-140 254-376 (792)
227 KOG4497 Uncharacterized conser 98.4 7.1E-07 1.5E-11 91.0 8.2 109 27-141 14-124 (447)
228 PRK02889 tolB translocation pr 98.4 6.2E-06 1.4E-10 92.9 16.7 166 43-241 176-347 (427)
229 KOG0649 WD40 repeat protein [G 98.4 3.5E-05 7.7E-10 75.9 18.8 154 23-199 116-281 (325)
230 KOG4497 Uncharacterized conser 98.4 9.5E-06 2.1E-10 82.9 14.9 38 21-58 91-129 (447)
231 KOG1517 Guanine nucleotide bin 98.4 1.1E-05 2.3E-10 93.5 16.9 154 24-194 1067-1241(1387)
232 KOG1272 WD40-repeat-containing 98.3 5E-07 1.1E-11 96.0 5.3 157 19-195 168-326 (545)
233 KOG2315 Predicted translation 98.3 4.1E-06 8.8E-11 91.3 12.2 116 22-140 271-391 (566)
234 KOG2321 WD40 repeat protein [G 98.3 5.5E-06 1.2E-10 90.3 12.8 150 22-190 176-341 (703)
235 KOG0322 G-protein beta subunit 98.3 2.7E-06 5.9E-11 84.6 8.9 150 22-190 151-321 (323)
236 KOG0974 WD-repeat protein WDR6 98.3 9.5E-06 2.1E-10 94.2 14.1 153 20-190 86-244 (967)
237 PF04762 IKI3: IKI3 family; I 98.3 7E-05 1.5E-09 91.3 22.1 104 18-122 117-275 (928)
238 KOG4227 WD40 repeat protein [G 98.3 1.1E-05 2.4E-10 83.9 12.9 152 60-241 55-214 (609)
239 PRK04922 tolB translocation pr 98.2 2.2E-05 4.7E-10 88.7 16.4 114 23-140 249-369 (433)
240 KOG1188 WD40 repeat protein [G 98.2 1.4E-05 3E-10 82.4 12.5 161 18-191 67-241 (376)
241 KOG3881 Uncharacterized conser 98.2 2.1E-05 4.6E-10 82.3 13.5 154 23-193 150-321 (412)
242 KOG1240 Protein kinase contain 98.2 2E-05 4.3E-10 92.8 14.6 173 48-243 1034-1217(1431)
243 KOG1064 RAVE (regulator of V-A 98.2 6.8E-06 1.5E-10 99.6 10.9 183 23-221 2210-2396(2439)
244 TIGR02800 propeller_TolB tol-p 98.2 0.0001 2.3E-09 82.7 19.7 92 44-140 171-267 (417)
245 KOG1354 Serine/threonine prote 98.1 2E-05 4.3E-10 81.2 11.7 204 22-238 26-289 (433)
246 KOG0644 Uncharacterized conser 98.1 1.7E-06 3.8E-11 97.5 4.0 111 61-192 190-300 (1113)
247 KOG1240 Protein kinase contain 98.1 0.0001 2.3E-09 87.0 18.0 153 24-193 1051-1226(1431)
248 PF02239 Cytochrom_D1: Cytochr 98.1 0.00019 4.2E-09 78.9 19.3 102 33-140 5-109 (369)
249 KOG3881 Uncharacterized conser 98.1 2.2E-05 4.7E-10 82.3 10.6 115 20-140 201-321 (412)
250 KOG4547 WD40 repeat-containing 98.1 0.0001 2.2E-09 81.2 16.0 113 20-139 101-220 (541)
251 PF04762 IKI3: IKI3 family; I 98.0 0.00039 8.4E-09 84.9 21.6 195 22-243 76-326 (928)
252 PF10282 Lactonase: Lactonase, 98.0 0.0017 3.7E-08 71.1 24.8 203 23-263 88-322 (345)
253 PRK00178 tolB translocation pr 98.0 0.0003 6.6E-09 79.4 19.5 92 44-140 180-276 (430)
254 PF02239 Cytochrom_D1: Cytochr 98.0 0.00028 6.1E-09 77.6 18.5 109 26-140 41-159 (369)
255 KOG3914 WD repeat protein WDR4 98.0 4E-05 8.7E-10 80.7 11.0 153 24-194 65-225 (390)
256 PF11768 DUF3312: Protein of u 98.0 5.1E-05 1.1E-09 84.1 12.3 81 19-99 257-337 (545)
257 PF10282 Lactonase: Lactonase, 98.0 0.0018 3.9E-08 70.9 24.4 201 24-242 39-265 (345)
258 PF00400 WD40: WD domain, G-be 98.0 1.7E-05 3.8E-10 56.6 5.7 36 54-89 3-39 (39)
259 COG2706 3-carboxymuconate cycl 97.9 0.0022 4.8E-08 67.2 22.7 199 22-241 40-263 (346)
260 KOG2315 Predicted translation 97.9 0.0003 6.4E-09 77.1 16.4 152 26-196 222-394 (566)
261 PF15492 Nbas_N: Neuroblastoma 97.9 0.0035 7.6E-08 64.0 22.6 100 23-122 45-166 (282)
262 KOG1354 Serine/threonine prote 97.9 8E-05 1.7E-09 76.9 10.7 214 21-242 164-426 (433)
263 PRK01029 tolB translocation pr 97.9 0.00041 8.8E-09 78.1 17.0 116 22-140 231-360 (428)
264 KOG0280 Uncharacterized conser 97.9 0.00023 5.1E-09 72.2 13.2 158 22-193 70-242 (339)
265 PRK04792 tolB translocation pr 97.9 0.00034 7.4E-09 79.3 16.3 98 24-122 264-368 (448)
266 KOG1334 WD40 repeat protein [G 97.8 0.00013 2.9E-09 78.4 11.5 206 21-243 142-358 (559)
267 KOG2041 WD40 repeat protein [G 97.8 0.00026 5.6E-09 79.1 13.3 196 22-243 72-280 (1189)
268 KOG1064 RAVE (regulator of V-A 97.8 5E-05 1.1E-09 92.5 8.0 142 22-194 2252-2400(2439)
269 KOG0280 Uncharacterized conser 97.8 0.00014 2.9E-09 73.9 9.6 116 24-145 124-247 (339)
270 COG2706 3-carboxymuconate cycl 97.7 0.0039 8.4E-08 65.5 19.5 111 25-140 92-222 (346)
271 COG4946 Uncharacterized protei 97.7 0.0027 5.9E-08 68.3 18.3 179 29-244 327-511 (668)
272 KOG1920 IkappaB kinase complex 97.7 0.0024 5.2E-08 76.1 19.6 164 18-194 106-324 (1265)
273 PF00400 WD40: WD domain, G-be 97.7 5E-05 1.1E-09 54.2 3.6 39 93-137 1-39 (39)
274 KOG4640 Anaphase-promoting com 97.6 0.00084 1.8E-08 74.8 14.3 73 62-141 21-94 (665)
275 COG5354 Uncharacterized protei 97.5 0.0031 6.6E-08 68.7 16.3 186 24-243 35-244 (561)
276 KOG2041 WD40 repeat protein [G 97.5 0.0012 2.7E-08 73.9 13.0 67 23-89 117-184 (1189)
277 KOG1275 PAB-dependent poly(A) 97.5 0.0023 4.9E-08 74.0 15.4 179 33-243 147-334 (1118)
278 KOG2314 Translation initiation 97.5 0.0013 2.9E-08 71.9 12.8 96 25-122 214-324 (698)
279 KOG4547 WD40 repeat-containing 97.5 0.0012 2.5E-08 73.1 12.4 102 32-141 69-174 (541)
280 KOG4532 WD40-like repeat conta 97.4 0.0065 1.4E-07 61.2 15.9 187 36-243 131-324 (344)
281 PF11768 DUF3312: Protein of u 97.3 0.03 6.5E-07 62.7 21.8 108 24-139 208-329 (545)
282 PLN02919 haloacid dehalogenase 97.3 0.03 6.6E-07 69.9 24.4 218 24-265 626-890 (1057)
283 PRK04043 tolB translocation pr 97.3 0.023 5E-07 63.8 20.8 76 44-120 170-249 (419)
284 PLN02919 haloacid dehalogenase 97.3 0.0052 1.1E-07 76.6 16.8 162 25-194 686-890 (1057)
285 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.058 1.3E-06 58.5 22.6 73 29-101 53-146 (352)
286 KOG3617 WD40 and TPR repeat-co 97.3 0.00035 7.6E-09 79.5 5.6 108 25-138 19-130 (1416)
287 KOG3914 WD repeat protein WDR4 97.2 0.00073 1.6E-08 71.5 7.4 74 60-140 150-224 (390)
288 PF04841 Vps16_N: Vps16, N-ter 97.2 0.018 4E-07 64.3 18.9 68 26-95 33-112 (410)
289 KOG1920 IkappaB kinase complex 97.2 0.028 6E-07 67.5 20.4 192 22-241 69-309 (1265)
290 KOG2695 WD40 repeat protein [G 97.2 0.00047 1E-08 71.4 5.1 113 22-140 253-377 (425)
291 PRK02888 nitrous-oxide reducta 97.2 0.0058 1.3E-07 69.8 14.3 194 29-241 200-451 (635)
292 KOG4714 Nucleoporin [Nuclear s 97.2 0.00073 1.6E-08 67.6 6.1 74 61-140 179-255 (319)
293 COG5170 CDC55 Serine/threonine 97.2 0.0023 5E-08 65.4 9.7 203 22-238 27-297 (460)
294 KOG4532 WD40-like repeat conta 97.1 0.017 3.7E-07 58.3 14.7 143 32-193 83-234 (344)
295 KOG1409 Uncharacterized conser 97.0 0.0082 1.8E-07 62.5 12.4 160 19-194 66-272 (404)
296 PF04053 Coatomer_WDAD: Coatom 96.9 0.23 5E-06 55.9 23.5 100 24-137 35-171 (443)
297 COG5354 Uncharacterized protei 96.8 0.0087 1.9E-07 65.3 11.2 116 22-140 275-396 (561)
298 COG0823 TolB Periplasmic compo 96.8 0.029 6.2E-07 62.8 15.8 98 24-122 195-300 (425)
299 KOG1334 WD40 repeat protein [G 96.7 0.0028 6.1E-08 68.5 6.0 114 21-140 336-467 (559)
300 KOG3621 WD40 repeat-containing 96.6 0.0058 1.3E-07 69.2 8.3 107 16-122 28-143 (726)
301 KOG2695 WD40 repeat protein [G 96.6 0.005 1.1E-07 64.0 7.0 154 26-193 216-377 (425)
302 KOG4190 Uncharacterized conser 96.6 0.0068 1.5E-07 66.2 8.3 151 60-243 734-898 (1034)
303 KOG0309 Conserved WD40 repeat- 96.6 0.0055 1.2E-07 69.3 7.7 157 22-193 68-233 (1081)
304 KOG2314 Translation initiation 96.6 0.011 2.4E-07 65.0 9.6 101 22-122 446-556 (698)
305 KOG1912 WD40 repeat protein [G 96.5 0.026 5.6E-07 64.5 12.6 109 24-140 18-144 (1062)
306 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.026 5.5E-07 61.3 11.9 81 20-100 246-339 (352)
307 KOG1409 Uncharacterized conser 96.5 0.026 5.6E-07 58.9 11.1 101 22-122 25-133 (404)
308 COG5170 CDC55 Serine/threonine 96.4 0.005 1.1E-07 63.1 5.7 164 19-190 170-365 (460)
309 KOG1008 Uncharacterized conser 96.4 0.0017 3.7E-08 72.4 2.4 149 23-191 58-224 (783)
310 KOG0309 Conserved WD40 repeat- 96.4 0.033 7.2E-07 63.2 12.3 183 22-221 25-230 (1081)
311 KOG2079 Vacuolar assembly/sort 96.4 0.007 1.5E-07 71.4 7.2 95 27-121 93-193 (1206)
312 PF06977 SdiA-regulated: SdiA- 96.3 0.23 4.9E-06 51.4 17.3 203 22-241 22-240 (248)
313 PF08450 SGL: SMP-30/Gluconola 96.3 0.55 1.2E-05 48.5 20.4 183 24-240 42-244 (246)
314 KOG4190 Uncharacterized conser 96.2 0.007 1.5E-07 66.1 5.9 154 23-193 737-907 (1034)
315 KOG4714 Nucleoporin [Nuclear s 96.2 0.03 6.6E-07 56.3 9.7 147 70-243 98-246 (319)
316 KOG2395 Protein involved in va 96.2 0.039 8.5E-07 60.7 11.1 201 16-243 271-493 (644)
317 smart00320 WD40 WD40 repeats. 96.1 0.013 2.8E-07 39.5 5.1 30 60-89 11-40 (40)
318 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.24 5.2E-06 44.0 13.7 84 24-112 2-89 (111)
319 KOG2066 Vacuolar assembly/sort 96.1 0.038 8.2E-07 63.6 10.9 98 32-140 82-188 (846)
320 PF00930 DPPIV_N: Dipeptidyl p 96.1 0.21 4.7E-06 54.7 16.8 58 22-80 43-119 (353)
321 PF15492 Nbas_N: Neuroblastoma 96.0 0.059 1.3E-06 55.2 11.1 91 11-101 137-269 (282)
322 KOG3617 WD40 and TPR repeat-co 96.0 0.018 3.8E-07 66.2 7.6 70 22-91 60-131 (1416)
323 PF07433 DUF1513: Protein of u 95.8 0.42 9.2E-06 50.4 16.6 94 27-120 56-179 (305)
324 KOG2066 Vacuolar assembly/sort 95.8 0.16 3.5E-06 58.7 14.2 90 24-122 42-136 (846)
325 COG0823 TolB Periplasmic compo 95.7 0.13 2.8E-06 57.6 13.3 98 24-122 240-344 (425)
326 KOG0882 Cyclophilin-related pe 95.6 0.13 2.8E-06 55.6 12.0 223 23-269 55-311 (558)
327 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.13 2.8E-06 45.7 9.8 104 64-188 2-110 (111)
328 PF08450 SGL: SMP-30/Gluconola 95.5 0.64 1.4E-05 48.0 17.0 94 26-122 4-104 (246)
329 KOG0882 Cyclophilin-related pe 95.5 0.095 2.1E-06 56.6 10.6 195 28-242 15-222 (558)
330 KOG1912 WD40 repeat protein [G 95.5 0.42 9E-06 55.1 15.9 94 22-115 56-167 (1062)
331 smart00320 WD40 WD40 repeats. 95.4 0.032 6.9E-07 37.5 4.7 39 93-137 2-40 (40)
332 KOG1832 HIV-1 Vpr-binding prot 95.2 0.018 3.9E-07 66.5 4.0 79 22-100 1102-1185(1516)
333 PF08553 VID27: VID27 cytoplas 95.1 0.17 3.8E-06 60.1 12.0 147 72-243 492-640 (794)
334 KOG2114 Vacuolar assembly/sort 95.0 0.26 5.6E-06 57.5 12.7 160 67-243 29-194 (933)
335 KOG1645 RING-finger-containing 95.0 0.082 1.8E-06 56.4 8.0 76 60-141 192-268 (463)
336 PF12894 Apc4_WD40: Anaphase-p 95.0 0.062 1.3E-06 40.0 5.1 34 61-95 11-44 (47)
337 PF07433 DUF1513: Protein of u 94.9 0.33 7.3E-06 51.1 12.3 106 19-124 2-119 (305)
338 PF13360 PQQ_2: PQQ-like domai 94.9 0.74 1.6E-05 46.9 14.9 72 32-103 75-152 (238)
339 PRK02888 nitrous-oxide reducta 94.7 0.37 8E-06 55.5 13.0 91 43-140 296-405 (635)
340 PF00930 DPPIV_N: Dipeptidyl p 94.5 0.12 2.6E-06 56.7 8.5 91 30-122 1-119 (353)
341 PF08553 VID27: VID27 cytoplas 94.4 0.28 6.2E-06 58.3 11.7 110 7-122 513-637 (794)
342 PF03178 CPSF_A: CPSF A subuni 94.4 1.3 2.7E-05 47.9 16.0 139 33-192 42-202 (321)
343 KOG4649 PQQ (pyrrolo-quinoline 94.4 3 6.6E-05 42.5 16.8 107 27-141 16-125 (354)
344 KOG3621 WD40 repeat-containing 94.1 0.21 4.6E-06 57.0 9.2 91 23-113 78-180 (726)
345 TIGR03300 assembly_YfgL outer 94.1 0.37 8E-06 53.2 11.3 97 33-140 241-339 (377)
346 PRK13616 lipoprotein LpqB; Pro 93.7 0.24 5.2E-06 57.9 9.2 96 23-122 351-466 (591)
347 PF04053 Coatomer_WDAD: Coatom 93.6 0.74 1.6E-05 51.8 12.4 130 63-243 34-166 (443)
348 KOG1275 PAB-dependent poly(A) 93.5 0.43 9.4E-06 56.0 10.4 150 23-190 179-340 (1118)
349 KOG4649 PQQ (pyrrolo-quinoline 93.0 12 0.00026 38.4 19.8 70 32-101 62-133 (354)
350 TIGR03300 assembly_YfgL outer 93.0 0.41 8.9E-06 52.9 9.4 73 32-106 278-353 (377)
351 PRK13616 lipoprotein LpqB; Pro 92.8 1.7 3.7E-05 50.9 14.3 96 24-120 399-513 (591)
352 KOG2444 WD40 repeat protein [G 92.8 0.49 1.1E-05 47.3 8.3 105 30-140 67-178 (238)
353 COG3204 Uncharacterized protei 92.4 15 0.00032 38.5 18.6 172 22-202 86-273 (316)
354 PF14655 RAB3GAP2_N: Rab3 GTPa 92.1 0.45 9.7E-06 52.8 7.8 87 26-113 6-118 (415)
355 KOG2114 Vacuolar assembly/sort 91.9 1.9 4E-05 50.7 12.6 113 21-140 125-244 (933)
356 PF13360 PQQ_2: PQQ-like domai 91.8 0.65 1.4E-05 47.2 8.5 68 31-99 34-102 (238)
357 KOG1645 RING-finger-containing 91.7 0.42 9.1E-06 51.2 6.7 91 23-113 195-291 (463)
358 COG3391 Uncharacterized conser 91.6 18 0.00038 40.1 20.0 110 25-140 77-191 (381)
359 PF08596 Lgl_C: Lethal giant l 91.6 2.5 5.4E-05 47.0 13.1 89 23-112 3-144 (395)
360 PF06433 Me-amine-dh_H: Methyl 91.2 0.61 1.3E-05 49.8 7.5 81 21-101 237-330 (342)
361 KOG1832 HIV-1 Vpr-binding prot 91.2 0.53 1.1E-05 55.0 7.2 77 60-140 1100-1176(1516)
362 PF10168 Nup88: Nuclear pore c 91.0 26 0.00057 42.1 21.5 81 12-93 75-181 (717)
363 KOG2395 Protein involved in va 90.1 1.5 3.2E-05 48.9 9.2 111 6-122 364-490 (644)
364 KOG3630 Nuclear pore complex, 90.0 0.51 1.1E-05 56.7 6.0 102 16-120 152-260 (1405)
365 KOG2280 Vacuolar assembly/sort 89.3 13 0.00029 43.4 16.3 96 24-122 35-146 (829)
366 COG3386 Gluconolactonase [Carb 89.2 20 0.00043 38.4 17.0 151 63-242 112-276 (307)
367 KOG1008 Uncharacterized conser 89.2 0.12 2.6E-06 58.2 0.2 107 23-138 104-224 (783)
368 PF10647 Gmad1: Lipoprotein Lp 88.9 3.9 8.4E-05 42.5 11.2 97 23-120 25-128 (253)
369 COG5167 VID27 Protein involved 88.4 1.8 4E-05 47.9 8.4 145 70-244 476-626 (776)
370 PF02897 Peptidase_S9_N: Proly 88.0 4.6 9.9E-05 45.2 11.9 97 24-120 126-243 (414)
371 PRK11138 outer membrane biogen 87.8 4 8.7E-05 45.4 11.2 97 33-140 256-354 (394)
372 PF15390 DUF4613: Domain of un 87.8 3.6 7.8E-05 46.7 10.3 97 24-121 59-173 (671)
373 PF15390 DUF4613: Domain of un 87.0 3.6 7.7E-05 46.7 9.8 76 16-91 107-186 (671)
374 PF10647 Gmad1: Lipoprotein Lp 85.2 9.3 0.0002 39.7 11.5 100 23-122 67-184 (253)
375 PF03178 CPSF_A: CPSF A subuni 84.6 16 0.00035 39.3 13.6 116 14-140 81-203 (321)
376 PRK11138 outer membrane biogen 84.5 4.9 0.00011 44.7 9.8 68 33-102 294-364 (394)
377 PF04841 Vps16_N: Vps16, N-ter 84.4 9.6 0.00021 42.7 12.0 55 61-115 216-271 (410)
378 PRK10115 protease 2; Provision 84.1 11 0.00025 45.1 13.1 95 24-119 129-238 (686)
379 PF10313 DUF2415: Uncharacteri 83.5 4 8.6E-05 29.7 5.4 31 63-93 2-35 (43)
380 PF06977 SdiA-regulated: SdiA- 82.8 19 0.00041 37.3 12.4 99 22-121 118-239 (248)
381 PF14870 PSII_BNR: Photosynthe 82.5 35 0.00075 36.5 14.5 101 18-121 100-204 (302)
382 KOG1916 Nuclear protein, conta 82.1 1.5 3.3E-05 51.6 4.3 119 16-140 175-324 (1283)
383 KOG4460 Nuclear pore complex, 81.4 35 0.00075 38.5 14.0 81 16-96 98-203 (741)
384 PF14870 PSII_BNR: Photosynthe 81.2 23 0.0005 37.8 12.6 99 22-122 145-251 (302)
385 PF14583 Pectate_lyase22: Olig 81.0 94 0.002 34.2 17.9 96 23-120 189-299 (386)
386 COG3490 Uncharacterized protei 80.4 10 0.00023 39.3 9.1 94 28-121 120-243 (366)
387 TIGR02276 beta_rpt_yvtn 40-res 80.3 7.1 0.00015 27.6 6.0 31 71-101 1-32 (42)
388 COG3490 Uncharacterized protei 80.0 13 0.00029 38.6 9.7 108 16-123 62-181 (366)
389 PF12234 Rav1p_C: RAVE protein 79.4 14 0.00031 43.2 11.1 99 24-123 32-148 (631)
390 COG3204 Uncharacterized protei 79.0 66 0.0014 33.9 14.4 70 63-138 87-157 (316)
391 PF10168 Nup88: Nuclear pore c 79.0 28 0.0006 41.9 13.6 71 62-139 85-179 (717)
392 PF14781 BBS2_N: Ciliary BBSom 78.9 40 0.00086 31.2 11.5 86 26-113 3-102 (136)
393 KOG4499 Ca2+-binding protein R 78.4 15 0.00032 37.2 9.2 89 25-113 161-263 (310)
394 KOG1116 Sphingosine kinase, in 78.3 1 2.2E-05 51.0 1.4 50 709-759 12-61 (579)
395 PRK13684 Ycf48-like protein; P 77.3 48 0.001 36.0 14.0 100 21-122 172-278 (334)
396 PF07569 Hira: TUP1-like enhan 76.5 9 0.00019 38.9 7.6 54 69-122 18-85 (219)
397 COG3391 Uncharacterized conser 76.5 37 0.00081 37.6 13.2 97 25-121 163-270 (381)
398 KOG2377 Uncharacterized conser 76.1 83 0.0018 35.0 14.7 56 60-115 65-124 (657)
399 KOG1897 Damage-specific DNA bi 76.0 2E+02 0.0043 35.3 20.6 105 24-137 777-896 (1096)
400 KOG2079 Vacuolar assembly/sort 75.0 9.7 0.00021 46.2 8.1 69 17-85 126-199 (1206)
401 KOG1916 Nuclear protein, conta 73.2 1.6 3.4E-05 51.5 1.2 93 17-112 128-233 (1283)
402 COG3386 Gluconolactonase [Carb 72.9 24 0.00051 37.8 10.0 88 25-113 166-264 (307)
403 PF07569 Hira: TUP1-like enhan 71.9 38 0.00083 34.3 10.8 67 24-93 15-97 (219)
404 PF08728 CRT10: CRT10; InterP 71.9 25 0.00055 41.7 10.5 113 20-138 99-245 (717)
405 PLN00033 photosystem II stabil 71.4 1.7E+02 0.0038 32.5 16.7 96 24-122 241-346 (398)
406 PF11715 Nup160: Nucleoporin N 70.2 22 0.00048 41.4 9.9 72 31-102 156-259 (547)
407 PF07676 PD40: WD40-like Beta 69.7 13 0.00028 25.9 5.0 27 62-88 9-38 (39)
408 COG5290 IkappaB kinase complex 69.6 70 0.0015 38.0 13.0 37 17-53 108-144 (1243)
409 PHA02713 hypothetical protein; 69.3 35 0.00076 39.9 11.3 49 32-82 351-408 (557)
410 KOG2247 WD40 repeat-containing 68.3 1.2 2.6E-05 49.1 -1.0 106 16-121 69-177 (615)
411 KOG1897 Damage-specific DNA bi 67.4 1.7E+02 0.0038 35.8 15.9 118 63-192 489-613 (1096)
412 PF10214 Rrn6: RNA polymerase 66.9 1.1E+02 0.0023 37.5 15.1 103 11-114 135-257 (765)
413 PF10313 DUF2415: Uncharacteri 66.8 17 0.00036 26.6 4.9 29 23-51 2-33 (43)
414 PF00780 CNH: CNH domain; Int 66.8 1.5E+02 0.0033 30.7 14.6 60 71-140 5-65 (275)
415 cd00216 PQQ_DH Dehydrogenases 65.8 1.5E+02 0.0032 34.1 15.3 68 34-101 111-193 (488)
416 PF02897 Peptidase_S9_N: Proly 65.4 14 0.00031 41.1 6.9 55 64-120 126-186 (414)
417 KOG4441 Proteins containing BT 64.1 46 0.001 39.0 10.8 108 32-141 332-454 (571)
418 TIGR03075 PQQ_enz_alc_DH PQQ-d 63.2 28 0.00062 40.4 8.8 60 43-102 441-501 (527)
419 PF12657 TFIIIC_delta: Transcr 61.9 42 0.0009 32.6 8.5 29 63-91 87-121 (173)
420 PF14583 Pectate_lyase22: Olig 60.4 48 0.001 36.5 9.2 86 28-113 42-132 (386)
421 PF07995 GSDH: Glucose / Sorbo 59.5 1.1E+02 0.0024 33.1 12.2 98 24-122 4-132 (331)
422 PF12234 Rav1p_C: RAVE protein 58.4 1.2E+02 0.0026 35.8 12.6 69 63-137 31-102 (631)
423 PF05096 Glu_cyclase_2: Glutam 58.1 1.8E+02 0.0038 30.4 12.5 95 24-121 132-249 (264)
424 KOG2377 Uncharacterized conser 57.1 51 0.0011 36.6 8.6 95 22-118 67-168 (657)
425 KOG2006 WD40 repeat protein [G 56.2 49 0.0011 40.3 9.0 78 16-93 143-227 (1023)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 54.4 80 0.0017 35.3 10.0 78 23-100 309-407 (415)
427 PF14761 HPS3_N: Hermansky-Pud 54.4 2.4E+02 0.0053 28.4 13.0 74 45-122 3-78 (215)
428 PF13570 PQQ_3: PQQ-like domai 54.3 22 0.00048 25.0 3.8 39 52-92 1-40 (40)
429 KOG3630 Nuclear pore complex, 52.9 38 0.00082 41.7 7.4 60 19-78 196-260 (1405)
430 KOG2247 WD40 repeat-containing 52.7 1.3 2.9E-05 48.8 -4.0 108 26-140 39-148 (615)
431 PLN00033 photosystem II stabil 51.4 2.6E+02 0.0057 31.1 13.5 103 17-122 276-389 (398)
432 PF00780 CNH: CNH domain; Int 50.6 48 0.001 34.4 7.4 61 31-93 5-66 (275)
433 PF05811 DUF842: Eukaryotic pr 50.1 1.7E+02 0.0037 27.1 9.9 89 356-459 1-90 (131)
434 PF10214 Rrn6: RNA polymerase 50.1 2.7E+02 0.0059 34.0 14.6 67 23-90 81-175 (765)
435 PF14761 HPS3_N: Hermansky-Pud 50.0 52 0.0011 33.1 6.8 54 28-81 22-79 (215)
436 TIGR02604 Piru_Ver_Nterm putat 49.8 81 0.0018 34.6 9.3 97 24-122 16-142 (367)
437 PF08596 Lgl_C: Lethal giant l 49.7 1.2E+02 0.0026 33.8 10.5 206 10-241 77-326 (395)
438 TIGR02276 beta_rpt_yvtn 40-res 48.9 68 0.0015 22.3 5.8 39 31-69 1-41 (42)
439 PRK13684 Ycf48-like protein; P 48.7 2.4E+02 0.0051 30.6 12.6 101 19-122 212-321 (334)
440 COG5167 VID27 Protein involved 48.4 1.3E+02 0.0029 34.0 10.2 48 74-121 574-621 (776)
441 PF01011 PQQ: PQQ enzyme repea 46.8 40 0.00087 23.5 4.1 28 35-62 2-30 (38)
442 PF13449 Phytase-like: Esteras 46.6 1.9E+02 0.004 31.2 11.3 105 15-120 13-163 (326)
443 PHA03098 kelch-like protein; P 46.2 2.7E+02 0.0059 32.2 13.4 25 71-95 341-370 (534)
444 smart00564 PQQ beta-propeller 46.1 41 0.00089 22.2 4.0 25 75-99 8-32 (33)
445 cd00216 PQQ_DH Dehydrogenases 45.4 91 0.002 35.8 9.1 60 42-101 365-434 (488)
446 smart00564 PQQ beta-propeller 44.6 50 0.0011 21.7 4.2 24 35-58 8-32 (33)
447 PHA02713 hypothetical protein; 44.2 2.4E+02 0.0051 33.1 12.4 64 32-96 303-380 (557)
448 KOG4441 Proteins containing BT 44.2 1.8E+02 0.0039 34.2 11.3 105 32-140 380-500 (571)
449 TIGR03074 PQQ_membr_DH membran 43.7 97 0.0021 37.7 9.2 69 33-101 260-354 (764)
450 COG4590 ABC-type uncharacteriz 43.6 56 0.0012 36.2 6.4 73 19-92 218-300 (733)
451 PF07676 PD40: WD40-like Beta 42.5 65 0.0014 22.3 4.7 26 23-48 10-38 (39)
452 PF08728 CRT10: CRT10; InterP 41.7 87 0.0019 37.4 8.1 71 21-91 163-246 (717)
453 PF13449 Phytase-like: Esteras 41.4 2.8E+02 0.006 29.9 11.7 98 23-120 86-231 (326)
454 PF05096 Glu_cyclase_2: Glutam 40.9 4.5E+02 0.0096 27.5 14.0 116 12-139 37-157 (264)
455 KOG4499 Ca2+-binding protein R 40.2 1.3E+02 0.0029 30.6 7.9 63 6-71 195-263 (310)
456 PF12341 DUF3639: Protein of u 39.1 66 0.0014 21.0 3.7 25 62-88 2-26 (27)
457 TIGR02604 Piru_Ver_Nterm putat 38.3 1.9E+02 0.0042 31.7 10.0 95 24-122 74-202 (367)
458 PF14727 PHTB1_N: PTHB1 N-term 38.1 6.2E+02 0.014 28.4 17.3 141 32-193 36-205 (418)
459 PRK10115 protease 2; Provision 37.8 65 0.0014 38.7 6.6 56 63-121 128-189 (686)
460 KOG1983 Tomosyn and related SN 37.8 1.6E+02 0.0035 37.0 10.1 34 19-52 33-66 (993)
461 TIGR03074 PQQ_membr_DH membran 36.7 1.3E+02 0.0028 36.6 8.8 68 33-100 194-287 (764)
462 TIGR02171 Fb_sc_TIGR02171 Fibr 36.6 1.4E+02 0.0029 36.6 8.7 82 35-116 320-411 (912)
463 PHA03098 kelch-like protein; P 36.1 4.4E+02 0.0095 30.4 13.1 63 32-96 342-419 (534)
464 PF09763 Sec3_C: Exocyst compl 34.3 8.3E+02 0.018 29.5 15.3 98 273-371 21-131 (701)
465 PF05935 Arylsulfotrans: Aryls 32.7 1.9E+02 0.0041 33.1 9.0 93 27-122 153-290 (477)
466 TIGR03118 PEPCTERM_chp_1 conse 31.7 3.3E+02 0.0071 29.1 9.5 63 39-101 218-289 (336)
467 PF09660 DUF2397: Protein of u 31.7 8.4E+02 0.018 28.0 16.4 65 386-453 247-318 (486)
468 TIGR01643 YD_repeat_2x YD repe 31.7 1.8E+02 0.0039 20.4 5.7 37 52-88 5-41 (42)
469 COG5290 IkappaB kinase complex 30.8 1.1E+02 0.0023 36.5 6.3 93 22-115 247-348 (1243)
470 PF01011 PQQ: PQQ enzyme repea 30.0 92 0.002 21.6 3.8 26 76-101 3-28 (38)
471 KOG2444 WD40 repeat protein [G 29.9 82 0.0018 31.9 4.6 57 35-91 116-177 (238)
472 PF12657 TFIIIC_delta: Transcr 29.6 99 0.0021 29.9 5.3 31 22-52 86-122 (173)
473 PF11635 Med16: Mediator compl 29.4 1.1E+03 0.024 28.7 28.6 70 174-243 271-342 (753)
474 PF01195 Pept_tRNA_hydro: Pept 29.3 1.1E+02 0.0024 30.0 5.6 44 345-388 140-183 (184)
475 TIGR03075 PQQ_enz_alc_DH PQQ-d 29.3 1.8E+02 0.0039 33.8 8.1 66 33-100 69-147 (527)
476 PF09361 Phasin_2: Phasin prot 29.2 3.5E+02 0.0076 22.8 8.9 81 353-433 6-86 (102)
477 PF01436 NHL: NHL repeat; Int 28.9 1.3E+02 0.0029 19.3 4.1 23 25-47 5-27 (28)
478 PF14269 Arylsulfotran_2: Aryl 28.6 1.7E+02 0.0038 31.1 7.3 67 24-90 146-219 (299)
479 COG4973 XerC Site-specific rec 28.2 5E+02 0.011 26.7 9.7 110 344-478 8-126 (299)
480 PF12768 Rax2: Cortical protei 27.3 6.5E+02 0.014 26.6 11.1 69 19-87 34-117 (281)
481 KOG1900 Nuclear pore complex, 26.9 1.3E+03 0.028 29.7 14.7 155 27-193 84-273 (1311)
482 PF14727 PHTB1_N: PTHB1 N-term 26.3 9.6E+02 0.021 26.9 14.9 72 27-100 180-278 (418)
483 TIGR03032 conserved hypothetic 25.7 6E+02 0.013 27.4 10.3 83 32-116 212-317 (335)
484 TIGR03606 non_repeat_PQQ dehyd 24.9 1.1E+03 0.023 26.9 13.0 50 24-73 32-90 (454)
485 COG1506 DAP2 Dipeptidyl aminop 24.8 1.6E+02 0.0035 35.0 6.9 92 24-120 15-117 (620)
486 PF01731 Arylesterase: Arylest 24.8 1.2E+02 0.0027 25.7 4.2 30 62-91 54-84 (86)
487 PHA02790 Kelch-like protein; P 24.1 9.6E+02 0.021 27.3 12.9 62 32-95 271-343 (480)
488 PF14269 Arylsulfotran_2: Aryl 23.5 2.7E+02 0.0059 29.7 7.6 70 64-139 146-220 (299)
489 COG1520 FOG: WD40-like repeat 23.4 2.9E+02 0.0063 30.2 8.2 70 33-103 68-141 (370)
490 PF10395 Utp8: Utp8 family; I 22.9 7.1E+02 0.015 29.7 11.2 31 60-90 128-158 (670)
491 PF02333 Phytase: Phytase; In 22.9 1.1E+03 0.023 26.2 18.7 129 64-203 158-303 (381)
492 PHA00724 hypothetical protein 22.8 69 0.0015 25.6 2.1 14 440-453 68-81 (83)
493 PF10334 DUF2421: Protein of u 22.3 6.7E+02 0.014 25.4 10.0 98 386-492 58-157 (229)
494 PHA02790 Kelch-like protein; P 22.2 9E+02 0.019 27.6 12.1 64 32-96 318-389 (480)
495 COG3857 AddB ATP-dependent nuc 22.1 6.9E+02 0.015 31.3 11.1 35 424-458 510-544 (1108)
496 PF12768 Rax2: Cortical protei 21.8 2.5E+02 0.0054 29.7 6.8 60 81-140 14-73 (281)
497 PF07250 Glyoxal_oxid_N: Glyox 21.6 8.3E+02 0.018 25.2 10.4 95 28-122 73-188 (243)
498 KOG3522 Predicted guanine nucl 21.5 1.6E+02 0.0035 35.4 5.6 110 23-138 583-702 (925)
499 TIGR02171 Fb_sc_TIGR02171 Fibr 21.4 1.9E+02 0.0041 35.5 6.3 52 24-75 352-412 (912)
500 PF05694 SBP56: 56kDa selenium 21.1 1.2E+03 0.026 26.4 11.9 113 24-141 183-344 (461)
No 1
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-61 Score=518.73 Aligned_cols=602 Identities=25% Similarity=0.293 Sum_probs=444.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEE-EEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVT-SLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~-~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
....+|..|.-+.|||.++++|+++.+|.|.++|++|||+|+++ |+..++ +++|+|||+.||+|..||+|+|.|+++|
T Consensus 15 ~~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 15 GVMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred hhhccccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44567788999999999999999999999999999999999999 998888 9999999999999999999999999999
Q ss_pred eEEEEe-cccCCceeEEEeecCCCceeccC-CCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec-cc
Q 004298 94 KLLRSL-KSHTVAVVCLNWEEDAQPSKNDF-GNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN-SS 170 (763)
Q Consensus 94 ~~~~~l-~~h~~~V~~l~ws~~~~~l~s~s-~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~-~~ 170 (763)
..++.. ......|+++.|.+.-...-..- +......|..-++++..+...+ ....++..-.......... ..
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~~~v~~e~n~~d~~~na~del~rll~~L~t~~r-----n~~~~sk~~sq~~~pk~~~l~~ 169 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDRIEVRVEENNRDFACNAIDELPRLLPKLPTSKR-----NIVPCSKIFSQFRGPKIDDLDS 169 (665)
T ss_pred CceeccccccccchheeecccceeeccccccchhhhhHhHHHHHhccCCCCcc-----cCCcccchhhhhhCCccccccc
Confidence 988872 23367899999974211100000 0001112222334433332111 1111111000111111111 11
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccC
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELG 250 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~ 250 (763)
+-..++++.+++-|...+..+..+.++...--..+.. -.. .+. -.-.|+.+.++.+.++
T Consensus 170 n~kl~Vlm~~ge~g~~~I~~~~~~~i~~~~~i~~~~~------~~~------~~s--~~k~d~~~~~~~~~g~------- 228 (665)
T KOG4640|consen 170 NLKLDVLMVFGERGNDKITAFFNGKIAVFLSILHILN------EDV------LIS--IIKVDGFYQVAYEDGG------- 228 (665)
T ss_pred cceeEEEEeeccccceEeeeccccchhhhccccchhh------ccc------hhh--hhhccceeEEEeccCC-------
Confidence 2334788888888999999877777665431110000 000 011 1112555555554433
Q ss_pred CCCCCcEEEEEeeccccccCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhCCC-CCCh
Q 004298 251 GHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDSLSTLIVDNGL-DSSP 329 (763)
Q Consensus 251 ~~~~~~l~~~~ld~~~l~~~~~~l~~la~~~s~i~~ll~~~~~~~~~m~~~W~~~~~~~~~~l~~~~~~l~~~~~-~~~~ 329 (763)
..+.+..+-.+.+.........+|.+.++|+.|.+|+..++.||.++|+++...+++++..+. ++. -+++
T Consensus 229 ----~e~l~~~l~~~LL~~~l~~~~~lat~~t~i~~L~~Yi~d~l~cm~e~~e~vfl~~~s~l~~~~-----~~~t~~~l 299 (665)
T KOG4640|consen 229 ----VETLLKTLLGPLLQSDLKSSVNLATYITHIKELIGYINDHLECMYEEWETVFLDMDSRLTDEA-----YLYTFGSL 299 (665)
T ss_pred ----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh-----hcccchhH
Confidence 234444566778888888999999999999999999999999999999999999999987653 333 3689
Q ss_pred HHHHHHhhhcccCChhHHHHHHhhhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhccccccccccccC
Q 004298 330 QEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIG 409 (763)
Q Consensus 330 ~~~l~~ll~tG~~s~~l~~fL~~~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~~~~~~lg 409 (763)
+.+|.+|.++|.+|-.+++||.++++|||+|||+++|+.+|.+++++|.+||+||+||++|+|++|||+|+|.+.|+.+|
T Consensus 300 q~e~~~L~l~G~~S~~lee~l~~~v~~kg~Kr~~~sv~~Sysslqqlv~~~l~pA~E~i~~~l~elrG~s~w~~~~~~l~ 379 (665)
T KOG4640|consen 300 QSELEALFLFGEASCELEEWLCESVGEKGFKRWKYSVCESYSSLQQLVTLHLQPACERIIYYLSELRGISRWIHNKESLG 379 (665)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCC----ChHHHHHHHHhhcCCC
Q 004298 410 LDEKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQ-EPSDQLPRY----NSELVVIFLKFLYDQD 484 (763)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~~-e~~~~~~~~----d~~~v~~fl~~~~~~~ 484 (763)
||+..+++|++++|.|+++++++++++.++.++|++||+||.+.|.++++ ||..+.+.. +..+|++|....+.++
T Consensus 380 lD~~lveeal~a~G~ll~kv~~~l~~L~s~~k~fk~Ff~Wl~~ai~~l~~ed~~l~~~~~i~e~~~~~l~~~~~~~~~~~ 459 (665)
T KOG4640|consen 380 LDATLVEEALKASGKLLLKVLEFLIVLDSDEKLFKKFFIWLNDAILELLDEDPVLKELFEIDEYDGYFLLEYFDRDFSKK 459 (665)
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhHHHHhHHHHHHhhhchhhc
Confidence 99999999999999999999999999999999999999999999999994 555444443 5556777766666544
Q ss_pred h--------------hhhccCCCCCCCccccchhHHHHHHHhhhcCCCCC---hhhhhHhHHHHHHHHHHHHHHHhcCch
Q 004298 485 P--------------VRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSD---CNYLRRTLLKEFQLLESSFKEAFLMPF 547 (763)
Q Consensus 485 ~--------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~f~~~~ 547 (763)
+ ++||+++...+.+.+.+. .+.|-+-+....+.+. +..+..+|+.+...+...+..++++|.
T Consensus 460 ~~e~~~~~~~~~l~~v~qyl~d~~~d~~~p~~~-~~~~~~~v~~~~~l~~~~lp~s~~~sl~~~k~~~~n~id~~~~k~~ 538 (665)
T KOG4640|consen 460 LTELSSIGDVFNLRDVGQYLSDMEKDIAQPNVN-HIQWHILVDLKTDLFAQKLPSSQINSLDAIKLPMHNYIDYLIQKPK 538 (665)
T ss_pred cchhhhcCCccchhhhhhhhhhhhhhccCCCCC-chhHHHHhhhhhhhhcCcCCcchhhhHHHHhcchhhHHHHHhhcch
Confidence 3 999999887776666664 4444333322222221 355688999999999999999999999
Q ss_pred hhhcccceeccccCCCCCCCCCC-CcccccccccccccCCCCCCCCCCcceEEEEecCCCCCcCCcceEEEEeccccCCC
Q 004298 548 TTISTKILCEDFLPLFPLPSSPT-SVFIPMSVSYYKGISQPHQASDHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMS 626 (763)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~~~~~~ 626 (763)
..|++.-....+.++.+...+.. .-+..+.-++|+++ ..+.+|.++++.. +.-+|+|.......
T Consensus 539 ~~i~ke~~~~~~~~l~~~~~~ed~~~r~l~~~t~~~~~--------a~~~~~~~~ti~~-------~~~~il~~~~~~~~ 603 (665)
T KOG4640|consen 539 HNIAKEPFSEICKKLLYIGTLEDENLRIISKESSVKNP--------ASFKSYLLSTIRF-------VVHSILRDIGLSDS 603 (665)
T ss_pred hhcccCcchhhhccccCCCCcchhhhhhhhccceeccc--------cchhhhhhHHhhc-------chhheeeccccccc
Confidence 99998888888889888777663 33455555779986 7788999988863 26677887555555
Q ss_pred ccccCcccc---eEEEEEecCC--eeEeeeeeeccCeEEEEeecccc
Q 004298 627 SIKKGYTSL---EAVLLSVPSG--YHCVDLSLYKEGQIVLLLNEACT 668 (763)
Q Consensus 627 ~~~~~~~~~---~~~~l~~~~~--~~~~d~~~y~d~~l~~l~~~~~~ 668 (763)
+.+.+..-. +-+...-+++ ++++|.+||+|+.+.++.+...+
T Consensus 604 n~~s~~It~~~ge~~~~~ee~~~~~~~~d~q~~nd~~~ai~~k~~v~ 650 (665)
T KOG4640|consen 604 NVHSSHITDYRGEFTENEEEDGTIPAYIDEQFYNDDFIACTAKVSVD 650 (665)
T ss_pred cccceeeeeccccceeeehhhchhHHHHHHhhcccchheeeeecccC
Confidence 555322100 1111111111 78999999999999999988544
No 2
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=100.00 E-value=6.8e-43 Score=353.49 Aligned_cols=208 Identities=37% Similarity=0.633 Sum_probs=202.4
Q ss_pred EEEEEeeccccccCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhCCCCCChHHHHHHh
Q 004298 257 LHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSL 336 (763)
Q Consensus 257 l~~~~ld~~~l~~~~~~l~~la~~~s~i~~ll~~~~~~~~~m~~~W~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~l 336 (763)
++++++|++++..++++++.+|.++++++.+++|+++++.+|.++|++++..+++||.++.+.+.+++.+.++.++|+++
T Consensus 2 l~~~~~d~~~l~~~~~~l~~la~~~~~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~~~~~~~~~el~~l 81 (210)
T PF12896_consen 2 LHLLTLDLTFLSSSSRELVELARKSSQIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEKGGEGSLQDELLDL 81 (210)
T ss_pred eeEEEEeCchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred hhcccCChhHHHHHHhhhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhcccccc-ccccccCCCHHHH
Q 004298 337 LGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWR-ARFHGIGLDEKLI 415 (763)
Q Consensus 337 l~tG~~s~~l~~fL~~~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~-~~~~~lgl~~~~~ 415 (763)
|+||+++|++++||+|+|||||+|||+|+++++|++++++++++|+||+|||+++|++|+|+++|+ .+++.+||+++.+
T Consensus 82 LltG~~s~~l~~fL~~~l~erglKr~~k~~~~~y~~i~~l~~~~l~pa~erl~~~l~~L~Gl~~~~~~~~~~lgl~~~~~ 161 (210)
T PF12896_consen 82 LLTGHASPALKQFLVNQLGERGLKRWEKAVDSAYSSIRKLLFEHLIPALERLIVLLSELRGLSRWSQDRFSGLGLDESQL 161 (210)
T ss_pred HHhcCCCHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 4777899999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 004298 416 NNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQ 464 (763)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~~e~~~~ 464 (763)
++|++.++++++++++++++|+++.++|++||+||+.+|+++++||.+|
T Consensus 162 ~~~~~~~~~l~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~~~~e~~~~ 210 (210)
T PF12896_consen 162 EELLDAAQSLLLKAHELLQVINRELKQFKAFFSWLRYVIDRLADEPSSQ 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999987654
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=212.71 Aligned_cols=214 Identities=21% Similarity=0.262 Sum_probs=164.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE-EE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL-RS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~-~~ 98 (763)
..|.+++|+|+|..||+|+.|.++++|++ +..++++.+ |...|.|++|+|||+.||+|+.||+|++||.++|+.+ +.
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 45999999999999999999999999999 556777776 8899999999999999999999999999999988765 66
Q ss_pred ecccCCceeEEEeec-----CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 99 LKSHTVAVVCLNWEE-----DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 99 l~~h~~~V~~l~ws~-----~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+++|...|++++|.| .++.+++++ .|+++++||.... ......++|+..+ .++. + ..
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~s------kDg~vrIWd~~~~--~~~~~lsgHT~~V-------TCvr--w-GG 257 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSS------KDGSVRIWDTKLG--TCVRTLSGHTASV-------TCVR--W-GG 257 (480)
T ss_pred ccCcccceeEEeecccccCCCccceeccc------CCCCEEEEEccCc--eEEEEeccCccce-------EEEE--E-cC
Confidence 999999999999987 357888888 8999999998752 2222334555544 2222 2 33
Q ss_pred eeEEEEEcCCCcEEEEEcCc------e------------------eeeeeeecccc-----------------------c
Q 004298 174 FSILCSGDKDGSICFNIFGI------F------------------PIGKINIHKFH-----------------------V 206 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~------~------------------~ig~~~i~~~~-----------------------~ 206 (763)
..+|.+|+.|++|++|.... + ..|.++-.... .
T Consensus 258 ~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 258 EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 46999999999999995322 0 11111111110 0
Q ss_pred ccccCCCCCceeeec---------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 207 AIPNADEQGTCRLLN---------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 207 ~~~s~~~~~~~~l~~---------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
...+++.+.++.+|+ .-|.++.||||+++++.++-|+ .+.++..++.
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk------------SVkLW~g~tG 399 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK------------SVKLWDGRTG 399 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc------------ceeeeeCCCc
Confidence 123677888888997 3488999999999999998876 6677766553
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.3e-22 Score=203.74 Aligned_cols=236 Identities=21% Similarity=0.264 Sum_probs=165.6
Q ss_pred ccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc-----CCCEEEEE
Q 004298 8 RVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP-----DGKAIAVG 79 (763)
Q Consensus 8 ~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp-----DG~~Lasg 79 (763)
++..|+....++ .|.+++|+|||..||+|+.||+|.+|+. +|+.+-..- |.+.|++++|.| .+++||++
T Consensus 147 eTp~~t~KgH~~---WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~ 223 (480)
T KOG0271|consen 147 ETPLFTCKGHKN---WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS 223 (480)
T ss_pred CCcceeecCCcc---EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc
Confidence 344555544444 7999999999999999999999999998 666665543 778999999986 67899999
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCccccc
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTD 157 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~ 157 (763)
+.||+|+|||+.-+.++..+.+|+.+|+|+.|..+| +++++| .|++|++|+.... ...+.+|........-
T Consensus 224 skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS------~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS------QDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred cCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC------CCceEEEEEccchhHHHhhcccchheeeeec
Confidence 999999999999999999999999999999998665 678888 8999999987752 2333333222111110
Q ss_pred C------------Cccccc-----------ceecccCCCeeEEEEEcCCCcEEEEEcCc--eeeeeeeeccc--------
Q 004298 158 D------------SEDSFR-----------ELANSSHQRFSILCSGDKDGSICFNIFGI--FPIGKINIHKF-------- 204 (763)
Q Consensus 158 ~------------~~~~~~-----------~~~~~~~~~~~~L~sgs~DG~I~lw~~~~--~~ig~~~i~~~-------- 204 (763)
. ...... .......+.+..|++|+.|+++.+|.-.. .++.+..-|+.
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 0 000100 01111223456899999999999995221 12222211111
Q ss_pred --ccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 205 --HVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 205 --~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.--+.+++-|+++++|+ ++|++++||.|.+.|+.++.|. +++++.+.+.
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs------------TLKvw~V~tk 441 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS------------TLKVWDVRTK 441 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc------------eEEEEEeeee
Confidence 11234778899999998 5799999999966555555444 6666665543
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=7.1e-22 Score=204.06 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=167.3
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEccC-ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPE--KDLLAMATEDSKILLHRFNW-QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~-~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|.++.|+|. +.-+|+|+.||+|++|.+++ ..+-.+. |..+|..++|+|+|++|++++-|.+-++||++++..+.
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 45999999997 45899999999999999965 5666665 78899999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
...+|...|.+++|.+||..+++|+ .|...++||+++....+ ...+|...+ +...++|+|-.|
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGG------lD~~~RvWDlRtgr~im--~L~gH~k~I---------~~V~fsPNGy~l 360 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGG------LDSLGRVWDLRTGRCIM--FLAGHIKEI---------LSVAFSPNGYHL 360 (459)
T ss_pred hhcccccccceeEecCCCceeeccC------ccchhheeecccCcEEE--Eecccccce---------eeEeECCCceEE
Confidence 9999999999999999999999999 89999999999743332 223444433 456678999999
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeecccc-----c------ccccCCCCCceeeec--------------cceeeEEecC
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKFH-----V------AIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~~-----~------~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
++|+.|++++||+.+.- ....++.|... . -..+++.|.++++|. +.|.++..|+
T Consensus 361 ATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred eecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc
Confidence 99999999999997764 23333333221 1 124778899999987 4688999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
|+..++.++.|.
T Consensus 441 d~~~i~t~s~DR 452 (459)
T KOG0272|consen 441 DSQAIATSSFDR 452 (459)
T ss_pred CCceEEEeccCc
Confidence 999888887664
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.84 E-value=2.9e-20 Score=205.87 Aligned_cols=191 Identities=21% Similarity=0.278 Sum_probs=160.3
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
..|..| |..+.|+|+.++|++++.|++|++|.+ ++..+...+ |..+|..+.|+|-|-+||+|+.|++-++|...
T Consensus 448 ~GH~GP----Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 448 YGHSGP----VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred ecCCCc----eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 346666 999999999999999999999999999 666666665 77899999999999999999999999999999
Q ss_pred CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+.++.+.+|.+.|.|+.|+|+..++++|| .|+++|+||..+... ...+.||.+.+ ....++
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS------sD~tVRlWDv~~G~~--VRiF~GH~~~V---------~al~~S 586 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGS------SDRTVRLWDVSTGNS--VRIFTGHKGPV---------TALAFS 586 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCC------CCceEEEEEcCCCcE--EEEecCCCCce---------EEEEEc
Confidence 9999999999999999999999999999999 899999999987422 23345666655 345567
Q ss_pred CCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 172 QRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.+|++|+.||.|.+|+++.- .+..+ +-+.+.|.+++||.||..|++++.|.
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l------------------~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQL------------------KGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhh------------------hcccCceeEEEEecCCCEEEecCCCC
Confidence 89999999999999999997652 22222 12234688999999999999887765
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=7e-20 Score=189.42 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=165.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|..+.||++++.||+|+.+|.++||.. +.+.+.++. |...|.++.|+|. +..+|+|+.||+|++|++++...+..+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh
Confidence 999999999999999999999999998 666676665 8899999999995 679999999999999999998999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|..++|+|+|+++.+++ .|.+-++||+.++..-+. ..||..-+ +..+++++|.++++
T Consensus 258 ~gH~~RVs~VafHPsG~~L~Tas------fD~tWRlWD~~tk~ElL~--QEGHs~~v---------~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTAS------FDSTWRLWDLETKSELLL--QEGHSKGV---------FSIAFQPDGSLAAT 320 (459)
T ss_pred hcchhhheeeeecCCCceeeecc------cccchhhcccccchhhHh--hccccccc---------ceeEecCCCceeec
Confidence 99999999999999999999999 899999999998632222 12333222 33457789999999
Q ss_pred EcCCCcEEEEEcCce-----------eeeeeeecccccccccCCCCCceeeec--------------cceeeEEecCC-C
Q 004298 180 GDKDGSICFNIFGIF-----------PIGKINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKD-L 233 (763)
Q Consensus 180 gs~DG~I~lw~~~~~-----------~ig~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD-g 233 (763)
|+-|..-++|+.+.- ++-.+.....-.+..+++.|+++++|+ .-|++|+|+|+ |
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 999999999987652 233334444455667999999999998 34788999994 5
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
.+|+.++.|.
T Consensus 401 ~fL~TasyD~ 410 (459)
T KOG0272|consen 401 YFLVTASYDN 410 (459)
T ss_pred eEEEEcccCc
Confidence 5555555554
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=6e-19 Score=174.00 Aligned_cols=203 Identities=16% Similarity=0.132 Sum_probs=153.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|..+..+++|++..+++.|+.+++|++ .|+....+. |+.-|.+++|+||.+.|++|+.|.+|++|++- |.+..++.
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 4999999999999999999999999999 556555554 88999999999999999999999999999987 56666655
Q ss_pred cc--CCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 101 SH--TVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 101 ~h--~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+ .+.|+|+.|+|+ ...+++++ +|+++++||..+. ++....-++++.. .....++++.+
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s------~DktvKvWnl~~~--~l~~~~~gh~~~v---------~t~~vSpDGsl 206 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSAS------WDKTVKVWNLRNC--QLRTTFIGHSGYV---------NTVTVSPDGSL 206 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEcc------CCceEEEEccCCc--chhhccccccccE---------EEEEECCCCCE
Confidence 43 689999999998 67889998 9999999999873 2223333455444 23456799999
Q ss_pred EEEEcCCCcEEEEEcCceee-----eeeeeccccccc----ccCCCCCceeeec-----------------------cce
Q 004298 177 LCSGDKDGSICFNIFGIFPI-----GKINIHKFHVAI----PNADEQGTCRLLN-----------------------ASI 224 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~i-----g~~~i~~~~~~~----~s~~~~~~~~l~~-----------------------~~I 224 (763)
.++|+.||.+.+|+...-.. +...++.....+ .......++++|+ ..+
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 99999999999998654221 011111111110 1223445688887 125
Q ss_pred eeEEecCCCCEEEEEeecC
Q 004298 225 YKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 225 ~~v~~SpDg~~Llv~~~d~ 243 (763)
.+++||+||..|+.+-+++
T Consensus 287 lslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred EEEEEcCCCcEEEeeecCC
Confidence 6789999999999987766
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.4e-18 Score=169.12 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=124.9
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-
Q 004298 21 ASQIKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN- 92 (763)
Q Consensus 21 ~~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~- 92 (763)
+++|..++|+|. |.+||+++.|..|++|...+..-|... |.+.|++++|+|.|++||+|+-|.++.||.=+.
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 347999999998 899999999999999999754446554 788999999999999999999999999998664
Q ss_pred -CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceeccc
Q 004298 93 -GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 93 -g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.+++.++.+|.+.|.|++|+++|.++++++ .|+.+=+|..... -....+...+|+.- ++. ..+
T Consensus 94 efecv~~lEGHEnEVK~Vaws~sG~~LATCS------RDKSVWiWe~deddEfec~aVL~~HtqD-------VK~--V~W 158 (312)
T KOG0645|consen 94 EFECVATLEGHENEVKCVAWSASGNYLATCS------RDKSVWIWEIDEDDEFECIAVLQEHTQD-------VKH--VIW 158 (312)
T ss_pred ceeEEeeeeccccceeEEEEcCCCCEEEEee------CCCeEEEEEecCCCcEEEEeeecccccc-------ccE--EEE
Confidence 478899999999999999999999999999 9999999976631 00000111122211 111 235
Q ss_pred CCCeeEEEEEcCCCcEEEEEc
Q 004298 171 HQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~ 191 (763)
+|...+|++++.|.+|++|..
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred cCCcceeEEeccCCeEEEEee
Confidence 688889999999999999963
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.81 E-value=1.1e-18 Score=182.80 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=159.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+|++++|+.+|++||+|+.||.+++|+.+|..+.++. |.++|.++.|+.+|.+|++|+-||++.+||..+|.....+.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 57999999999999999999999999999999998886 88999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
-|..+-..+.|..+..+. +++ .|+.++++.+..+.+. ....+|.+-+ ..+ .+++.+.+|+++
T Consensus 316 ~~s~~~lDVdW~~~~~F~-ts~------td~~i~V~kv~~~~P~--~t~~GH~g~V-------~al--k~n~tg~LLaS~ 377 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFA-TSS------TDGCIHVCKVGEDRPV--KTFIGHHGEV-------NAL--KWNPTGSLLASC 377 (524)
T ss_pred eccCCccceEEecCceEe-ecC------CCceEEEEEecCCCcc--eeeecccCce-------EEE--EECCCCceEEEe
Confidence 998887889999876654 444 6899999866543222 2233444433 223 356888999999
Q ss_pred cCCCcEEEEEcCce-eeeeeeecc-------------c------ccccccCCCCCceeeec--------------cceee
Q 004298 181 DKDGSICFNIFGIF-PIGKINIHK-------------F------HVAIPNADEQGTCRLLN--------------ASIYK 226 (763)
Q Consensus 181 s~DG~I~lw~~~~~-~ig~~~i~~-------------~------~~~~~s~~~~~~~~l~~--------------~~I~~ 226 (763)
+.|+++++|..+.- ..+.+..|. . .....+++.+.++++|+ .+|++
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 99999999953211 111111111 0 11234667888999998 48999
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
++|||||++++.+..|+
T Consensus 458 vafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDG 474 (524)
T ss_pred EEecCCCcEEEecCCCC
Confidence 99999999999988776
No 11
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=2.7e-19 Score=178.66 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=153.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.+.|..|||||+++++|+.||.|-||+. +|+.-..++ +...|.|++|+.|..++|+|+.||.|++|.+++
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 3889999999999999999999999998 454333332 457899999999999999999999999999999
Q ss_pred CeEEEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
|.+++.+. .|...|+|+.|+.|+..+.+++ .|.++|+--... .++.....||.++++ ...+.
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s------fD~tvRiHGlKS--GK~LKEfrGHsSyvn---------~a~ft 357 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSAS------FDQTVRIHGLKS--GKCLKEFRGHSSYVN---------EATFT 357 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhccc------ccceEEEecccc--chhHHHhcCcccccc---------ceEEc
Confidence 99999987 8999999999999999999998 899999987654 233334556766662 22356
Q ss_pred CCeeEEEEEcCCCcEEEEEcCc------ee-------eee-eeecccccccccCCCCCceeeec----------------
Q 004298 172 QRFSILCSGDKDGSICFNIFGI------FP-------IGK-INIHKFHVAIPNADEQGTCRLLN---------------- 221 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~------~~-------ig~-~~i~~~~~~~~s~~~~~~~~l~~---------------- 221 (763)
++++.+++++.||+|++|.... |. +.+ +.+...+.++..+....++-+-+
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 8889999999999999995332 21 111 12223333333222222222211
Q ss_pred cceeeEEecCCCCEEEEEeecC
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+...++++||.|..++.+++|+
T Consensus 438 GdFi~~~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDG 459 (508)
T ss_pred CceEEEEecCCCcEEEEEccCc
Confidence 3345678999999999999887
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.8e-18 Score=166.97 Aligned_cols=204 Identities=14% Similarity=0.197 Sum_probs=152.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC---CeEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN---GKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~---g~~~ 96 (763)
|..++|+|.|++||+++.|.++.||.-. .+.+-.+. |..+|.|++|+++|.+||+++.|+.|.||.+.. -+++
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 9999999999999999999999999983 34555554 888999999999999999999999999999874 3577
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC-CCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP-RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~-~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
..+..|...|..+.|+|...+++++| .|.+|++|...+ .--.+.....++...+ ....+++.++
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~S------YDnTIk~~~~~~dddW~c~~tl~g~~~TV---------W~~~F~~~G~ 208 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCS------YDNTIKVYRDEDDDDWECVQTLDGHENTV---------WSLAFDNIGS 208 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEec------cCCeEEEEeecCCCCeeEEEEecCccceE---------EEEEecCCCc
Confidence 88999999999999999999999999 899999997652 1111122223333222 3345678889
Q ss_pred EEEEEcCCCcEEEEE--cCceeeeeeeecccc---cccccCCCCCceeeec---------------------cceeeEEe
Q 004298 176 ILCSGDKDGSICFNI--FGIFPIGKINIHKFH---VAIPNADEQGTCRLLN---------------------ASIYKVAL 229 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~--~~~~~ig~~~i~~~~---~~~~s~~~~~~~~l~~---------------------~~I~~v~~ 229 (763)
.|++++.|+++++|. .+....++-.+-..+ ..+.+++.+..++++. ..|.+++|
T Consensus 209 rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 999999999999997 333333322222222 2345777777777753 35889999
Q ss_pred cCCCCEEEEEeec
Q 004298 230 SKDLFHLTVLCSG 242 (763)
Q Consensus 230 SpDg~~Llv~~~d 242 (763)
.|.+..+++.+.|
T Consensus 289 ~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 289 NPKVSNRLASGGD 301 (312)
T ss_pred cCCCCCceeecCC
Confidence 9965555555443
No 13
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.3e-18 Score=165.85 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|..+.|+-+|++..+++.|.+|++|+. .|..+.+.. ||.+|..++-+.|...||+|+.|..|.+||+++|+.++++
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 45999999999999999999999999998 788888887 9999999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
++|.+.|+.+.|+.+...+++|+ .|.++++||.+............. .+.+..+ .-....+++
T Consensus 98 rgH~aqVNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~s~ePiQildea-------~D~V~Si----~v~~heIva 160 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGS------FDSSVRLWDCRSRSFEPIQILDEA-------KDGVSSI----DVAEHEIVA 160 (307)
T ss_pred ccccceeeEEEecCcceEEEecc------ccceeEEEEcccCCCCccchhhhh-------cCceeEE----EecccEEEe
Confidence 99999999999999999999999 899999999987432221111110 1111111 223457899
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+.||+++.|+++ .|+... .. ...+|++++||+||+..++.+-++
T Consensus 161 GS~DGtvRtydiR---~G~l~s----------Dy------~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 161 GSVDGTVRTYDIR---KGTLSS----------DY------FGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred eccCCcEEEEEee---cceeeh----------hh------cCCcceeEEecCCCCEEEEeeccc
Confidence 9999999999843 444311 00 124799999999999999998776
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.80 E-value=3.6e-19 Score=183.34 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=164.8
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
|+.+ |.++.|++++..+++|+.+|.|++|..+.+.+..+. |...|++++|+|+...|+++++||+|+|||....
T Consensus 137 HDs~----Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 137 HDSP----VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred hccc----ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 6666 999999999999999999999999999877666554 5689999999999899999999999999999988
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+.-+.+++|...|+|+.|+|....+++++ .|..+++||.++...- ....+|...+ +...+.++
T Consensus 213 kee~vL~GHgwdVksvdWHP~kgLiasgs------kDnlVKlWDprSg~cl--~tlh~HKntV---------l~~~f~~n 275 (464)
T KOG0284|consen 213 KEERVLRGHGWDVKSVDWHPTKGLIASGS------KDNLVKLWDPRSGSCL--ATLHGHKNTV---------LAVKFNPN 275 (464)
T ss_pred chhheeccCCCCcceeccCCccceeEEcc------CCceeEeecCCCcchh--hhhhhccceE---------EEEEEcCC
Confidence 88889999999999999999999999999 8999999999874211 1122333333 34456678
Q ss_pred eeEEEEEcCCCcEEEEEcCc------eeeeeeeecccccc------cccCCCCCceeeec---------------cceee
Q 004298 174 FSILCSGDKDGSICFNIFGI------FPIGKINIHKFHVA------IPNADEQGTCRLLN---------------ASIYK 226 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~------~~ig~~~i~~~~~~------~~s~~~~~~~~l~~---------------~~I~~ 226 (763)
+++|++++.|..+++++.++ +.-++-.+.....+ +.+++.++.+..|. ..|.+
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 89999999999999998772 22233233222222 34777888888765 57999
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
++|.|=|..|+.++.|.
T Consensus 356 l~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDR 372 (464)
T ss_pred eeccccceeEeecCCCc
Confidence 99999988877766554
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.80 E-value=8.9e-18 Score=166.61 Aligned_cols=208 Identities=21% Similarity=0.257 Sum_probs=163.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-- 93 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-- 93 (763)
|...++|.++.|+++.+++++++.||.+.||+. +.+++.-++ +...|...+|+|.|+++|+|+-|+...||++.+.
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 444567999999999999999999999999998 888888877 7789999999999999999999999999999754
Q ss_pred ----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 94 ----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+..+.+.+|.+.+.|+.|-+|++ ++++| .|.+.-+||+.+.. ....+.+|.+-+ +...
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~S------GD~TCalWDie~g~--~~~~f~GH~gDV---------~sls 193 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGS------GDMTCALWDIETGQ--QTQVFHGHTGDV---------MSLS 193 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCc-eEecC------CCceEEEEEcccce--EEEEecCCcccE---------EEEe
Confidence 45567899999999999998665 55665 69999999998732 222344555433 3333
Q ss_pred cCC-CeeEEEEEcCCCcEEEEEcCc------eeeeeeeec-----ccccccccCCCCCceeeec----------------
Q 004298 170 SHQ-RFSILCSGDKDGSICFNIFGI------FPIGKINIH-----KFHVAIPNADEQGTCRLLN---------------- 221 (763)
Q Consensus 170 ~~~-~~~~L~sgs~DG~I~lw~~~~------~~ig~~~i~-----~~~~~~~s~~~~~~~~l~~---------------- 221 (763)
..| +++.+++|+.|+..++|+.+. |+-+.-++. .....+.+++.++++|+++
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 444 789999999999999998664 333332222 2223356888999999987
Q ss_pred cceeeEEecCCCCEEEEEeecC
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|.+++||..|+.|+++..|.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred CCceeEEEcccccEEEeeecCC
Confidence 4689999999999998876554
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=5.5e-18 Score=185.95 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=147.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATED-SKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D-g~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+|..++|+.+|+.||.|+.. |++.||.. ...-|.+.. |-..+++++++|||+++|+|++||+|+|||...|-|+.+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT 387 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE
Confidence 459999999999999998766 89999998 434444444 778999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+..|++.|+.+.|+..|+.+.+.+ -||++|.||+..... ..+ |... ..++..+.+.++.+.+++
T Consensus 388 FteHts~Vt~v~f~~~g~~llssS------LDGtVRAwDlkRYrN--fRT------ft~P--~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSS------LDGTVRAWDLKRYRN--FRT------FTSP--EPIQFSCVAVDPSGELVC 451 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEee------cCCeEEeeeecccce--eee------ecCC--CceeeeEEEEcCCCCEEE
Confidence 999999999999999999999998 899999999865210 000 0000 011111223345556666
Q ss_pred EEcCCC-cEEEEEcCcee------eeeeeec-----ccccccccCCCCCceeeec--------------cceeeEEecCC
Q 004298 179 SGDKDG-SICFNIFGIFP------IGKINIH-----KFHVAIPNADEQGTCRLLN--------------ASIYKVALSKD 232 (763)
Q Consensus 179 sgs~DG-~I~lw~~~~~~------ig~~~i~-----~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD 232 (763)
.|+.|. .|++|.+..-. -+.-+++ .......+++.|+++|+|+ .-+..++|+||
T Consensus 452 AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 666554 46666432211 0111111 1111234566677777776 34788999999
Q ss_pred CCEEEEEeecC
Q 004298 233 LFHLTVLCSGQ 243 (763)
Q Consensus 233 g~~Llv~~~d~ 243 (763)
|+.+++++.++
T Consensus 532 G~elaVaTldg 542 (893)
T KOG0291|consen 532 GKELAVATLDG 542 (893)
T ss_pred CCeEEEEEecc
Confidence 99999999886
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.79 E-value=8.4e-18 Score=165.95 Aligned_cols=221 Identities=14% Similarity=0.184 Sum_probs=164.7
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc------eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 18 KPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ------RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~------~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+..++.|+.++..+.+ +.+.+++.|.++.+|+++.. .+..+. |...|..+..++||++..+++.||++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 3446789999999974 88999999999999999432 233333 778899999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+++|+..+.|.+|...|.++++++|++.+++|+ .|+++++|+....... ..+..++... +.++.+.
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS------rDkTiklwnt~g~ck~-t~~~~~~~~W-------Vscvrfs 157 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS------RDKTIKLWNTLGVCKY-TIHEDSHREW-------VSCVRFS 157 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCceeecCC------CcceeeeeeecccEEE-EEecCCCcCc-------EEEEEEc
Confidence 999999999999999999999999999999999 9999999998763110 0000111222 2344555
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeee-eecccccc----------cccCCCCCceeeec-------------ccee
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKI-NIHKFHVA----------IPNADEQGTCRLLN-------------ASIY 225 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~-~i~~~~~~----------~~s~~~~~~~~l~~-------------~~I~ 225 (763)
+.....++++++.|+++++|+.+.+....- .-++...+ ..+++.++..-+|+ ..|.
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 555578999999999999999877644321 11111111 23677788888887 4789
Q ss_pred eEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 226 KVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
+++|||+.-.|..++. . .|..+.++..
T Consensus 238 sl~fspnrywL~~at~-~------------sIkIwdl~~~ 264 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATA-T------------SIKIWDLESK 264 (315)
T ss_pred eEEecCCceeEeeccC-C------------ceEEEeccch
Confidence 9999998555544432 2 5666666654
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=186.62 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=151.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc--eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc-cCCeE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQ--RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV-ENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~--~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv-e~g~~ 95 (763)
...|.++.|+|+|+.+++++.++.+++|.. .+. ....+ .|...|.+++|+|||+++++|+.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 345999999999999999999999999999 333 23332 37778999999999999999999999999999 56799
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
++++++|...|++++|+|+++.+++|+ .|+++++||... ........+|...+ ...++.++++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs------~D~tvriWd~~~--~~~~~~l~~hs~~i---------s~~~f~~d~~ 301 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGS------DDGTVRIWDVRT--GECVRKLKGHSDGI---------SGLAFSPDGN 301 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEec------CCCcEEEEeccC--CeEEEeeeccCCce---------EEEEECCCCC
Confidence 999999999999999999999999999 899999999987 22222333443333 2335678889
Q ss_pred EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeecc-ceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNA-SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~-~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+|++++.||.|++|+......... ..+ ..... . ++..++|||+|+++++++.|.
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~--~~~-----~~~~~-------~~~~~~~~fsp~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCL--KLL-----SGAEN-------SAPVTSVQFSPNGKYLLSASLDR 356 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeee--ecc-----cCCCC-------CCceeEEEECCCCcEEEEecCCC
Confidence 999999999999999776653300 000 00000 1 378899999999999998876
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.4e-17 Score=182.72 Aligned_cols=216 Identities=18% Similarity=0.165 Sum_probs=154.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL---- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~---- 95 (763)
..+.+++++|||+++|+|+.||.|+||+. .|-++.++. |...|+++.|+.+|+.+.+++-||+|+.||+...+.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 35999999999999999999999999999 677787776 888999999999999999999999888776654443
Q ss_pred ----------------------------------------EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceee
Q 004298 96 ----------------------------------------LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRF 135 (763)
Q Consensus 96 ----------------------------------------~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~ 135 (763)
+..+.+|+++|.+++|+|.+..++++| +|+++|+
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S------WDkTVRi 504 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS------WDKTVRI 504 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc------ccceEEE
Confidence 334448999999999999999999999 9999999
Q ss_pred cCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC-ceeeeeeeecccccccccCCCC
Q 004298 136 FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG-IFPIGKINIHKFHVAIPNADEQ 214 (763)
Q Consensus 136 wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~-~~~ig~~~i~~~~~~~~s~~~~ 214 (763)
|++-......... +..-..+...+.|+++-+++++-||.|.+|+.. ....|+++...-... .....+
T Consensus 505 W~if~s~~~vEtl-----------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~-gR~~~D 572 (893)
T KOG0291|consen 505 WDIFSSSGTVETL-----------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG-GRKETD 572 (893)
T ss_pred EEeeccCceeeeE-----------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc-cccccc
Confidence 9986532111100 011122445677899999999999999999743 334544432111000 000000
Q ss_pred Ccee---eeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 215 GTCR---LLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 215 ~~~~---l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
.... --....+.+++|+||+.+++++... .++++.+....+
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn------------~iCiY~v~~~vl 616 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAGGESN------------SICIYDVPEGVL 616 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEecCCcc------------cEEEEECchhhe
Confidence 0000 0013578999999999999886644 677776665543
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.76 E-value=5e-18 Score=188.30 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=149.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe---------------------------------cCCCcEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI---------------------------------SPGKSVTSLC 68 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~---------------------------------~~~~~V~~l~ 68 (763)
..|+|..|++++.++|.|..|..|++|.++..++..+ .|.++|....
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 4599999999999999999999999999963221111 1567899999
Q ss_pred EccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 69 WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 69 wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
|+||.++|++++.|++||+|++.+..++-.+++|..+|+++.|+|.|.+++|+| .|++.++|......+. ..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas------~D~tArLWs~d~~~Pl--Ri 530 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS------HDQTARLWSTDHNKPL--RI 530 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC------CCceeeeeecccCCch--hh
Confidence 999999999999999999999999999999999999999999999999999999 8999999976642111 11
Q ss_pred ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceee---ecccee
Q 004298 149 VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRL---LNASIY 225 (763)
Q Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l---~~~~I~ 225 (763)
..+|.+-+ -+..++|+.+++++||.|.+|++|+...-. .+|+ +.++|.
T Consensus 531 faghlsDV---------~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--------------------~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 531 FAGHLSDV---------DCVSFHPNSNYVATGSSDRTVRLWDVSTGN--------------------SVRIFTGHKGPVT 581 (707)
T ss_pred hccccccc---------ceEEECCcccccccCCCCceEEEEEcCCCc--------------------EEEEecCCCCceE
Confidence 22222211 123578999999999999999999843211 1232 336899
Q ss_pred eEEecCCCCEEEEEeecCc
Q 004298 226 KVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d~l 244 (763)
+++|||+|++|+.+..+++
T Consensus 582 al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred EEEEcCCCceEeecccCCc
Confidence 9999999999999988873
No 21
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=8.8e-17 Score=160.29 Aligned_cols=242 Identities=17% Similarity=0.245 Sum_probs=165.1
Q ss_pred ecCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc--cCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 15 QFDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRF--NWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l--~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+...|..+.|.+++|||.. .+++.++.||+|++|.+ +|+.+-+. .+.++|.+++|+.||..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 3445555779999999954 66778999999999999 34544433 3788999999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCC--ceeccCCCCCcccCCceeecCCCCCCCC----CCCccc-------------
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQ--PSKNDFGNIPTYEDRTSRFFPPAPRIPQ----MPGLVS------------- 150 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~--~l~s~s~~~~~~~d~~i~~wd~~~~~~~----l~~~~s------------- 150 (763)
+.+++ +.++..|.++|.++.|-+... .+++|| +|+++++||.+...+. +|...-
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS------WDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGS------WDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVAT 173 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecc------cccceeecccCCCCeeeeeeccceeeehhccCceeEEEe
Confidence 99995 456778999999999987654 789999 9999999999863211 111000
Q ss_pred CCccc-c--------------cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc----------------------
Q 004298 151 GDTGF-T--------------DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI---------------------- 193 (763)
Q Consensus 151 ~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~---------------------- 193 (763)
+.... + ......+.++.. ..+.+-.+.|+-.|.+.+-..+.
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~--f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVAC--FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEE--EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 00000 0 000111222222 23333458899999988763322
Q ss_pred eeeeeeeecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCcccc--ccCCCCCCcE
Q 004298 194 FPIGKINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQE--ELGGHGMHGL 257 (763)
Q Consensus 194 ~~ig~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~--~~~~~~~~~l 257 (763)
+.+..+..|.....+.+.|.||++..|+ .+|++.+|+.+|+.++.+..-+.... .+.+...+.|
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~~I 331 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKPQI 331 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCCeE
Confidence 2333444555566677899999999998 58999999999999988776443211 1111222356
Q ss_pred EEEEeecc
Q 004298 258 HCLVLDTS 265 (763)
Q Consensus 258 ~~~~ld~~ 265 (763)
.+.+..+.
T Consensus 332 ~l~~~~~~ 339 (347)
T KOG0647|consen 332 FLHPVSTE 339 (347)
T ss_pred EEeecccc
Confidence 66655544
No 22
>PTZ00421 coronin; Provisional
Probab=99.76 E-value=1.2e-16 Score=180.27 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=135.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCc--------eEEEec-CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQ--------RLWTIS-PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~--------~v~~~~-~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdv 90 (763)
+.|.+++|+| ++++||+|+.|++|++|++... .+..+. |...|.+++|+|++ ++|++|+.|++|+|||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 4599999999 8899999999999999999432 233443 77899999999986 69999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
++++.+..+.+|...|.+++|+|++..+++++ .|+++++||.+... ......++.... .....|
T Consensus 156 ~tg~~~~~l~~h~~~V~sla~spdG~lLatgs------~Dg~IrIwD~rsg~--~v~tl~~H~~~~------~~~~~w-- 219 (493)
T PTZ00421 156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS------KDKKLNIIDPRDGT--IVSSVEAHASAK------SQRCLW-- 219 (493)
T ss_pred CCCeEEEEEcCCCCceEEEEEECCCCEEEEec------CCCEEEEEECCCCc--EEEEEecCCCCc------ceEEEE--
Confidence 99999999999999999999999999999998 89999999988631 111112222111 111222
Q ss_pred CCCeeEEEE-E---cCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 171 HQRFSILCS-G---DKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 171 ~~~~~~L~s-g---s~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.++.+.+++ | +.||.|++|+.+... .....++. . ..+....|++|++.+++++.
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~----------~-------~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ----------S-------SALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC----------C-------CceEEEEEcCCCCEEEEEEe
Confidence 233334444 4 358999999976432 11111000 0 12445678999998888765
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.75 E-value=7.2e-17 Score=156.87 Aligned_cols=200 Identities=21% Similarity=0.179 Sum_probs=149.4
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe--EEEEecccCCceeEE
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK--LLRSLKSHTVAVVCL 109 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~--~~~~l~~h~~~V~~l 109 (763)
-+||+++.|.+|++|.. +|....++.| ...|+.+...||++.||+|+ ...||+||+.+++ .+.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 57899999999999999 8999999985 46899999999999999887 4679999998764 688999999999999
Q ss_pred EeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEE
Q 004298 110 NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF 188 (763)
Q Consensus 110 ~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~l 188 (763)
.|..+|+..++|+ +||++|+||++.. .++...+.+... ....+++..-|++|+.+|.|++
T Consensus 90 gF~~dgrWMyTgs------eDgt~kIWdlR~~~~qR~~~~~spVn-------------~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 90 GFQCDGRWMYTGS------EDGTVKIWDLRSLSCQRNYQHNSPVN-------------TVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred EEeecCeEEEecC------CCceEEEEeccCcccchhccCCCCcc-------------eEEecCCcceEEeecCCCcEEE
Confidence 9999999999999 9999999999873 222222222222 2235677778999999999999
Q ss_pred EEcCceeeeeeeeccc-------c-----cccccCCCCCceeeec--------------------cceeeEEecCCCCEE
Q 004298 189 NIFGIFPIGKINIHKF-------H-----VAIPNADEQGTCRLLN--------------------ASIYKVALSKDLFHL 236 (763)
Q Consensus 189 w~~~~~~ig~~~i~~~-------~-----~~~~s~~~~~~~~l~~--------------------~~I~~v~~SpDg~~L 236 (763)
|+.+.-......+... . .-.......|.+-.|+ +-|.++-+|||+++|
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 9876532221111110 0 0011222445555554 458889999999999
Q ss_pred EEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 237 TVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 237 lv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
+.++.|+ +++++..|.-
T Consensus 231 at~ssdk------------tv~iwn~~~~ 247 (311)
T KOG0315|consen 231 ATCSSDK------------TVKIWNTDDF 247 (311)
T ss_pred EeecCCc------------eEEEEecCCc
Confidence 9998877 6666665544
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.75 E-value=7.6e-17 Score=156.69 Aligned_cols=214 Identities=20% Similarity=0.228 Sum_probs=157.9
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCc
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGT 84 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~ 84 (763)
....+++|.. +.|..+...|++..||+++. ..|++|+++ .+++.++. |.+.|+++.|..||+.+.+|++||+
T Consensus 31 ~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 31 ICSRTIQHPD---SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred eEEEEEecCc---cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 3445555543 35999999999999998774 569999993 34677776 7789999999999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
++|||+++-.+-+.+ .|.++|+++..+|+...+++|. .+|.|++||+........ .+.+.+..++
T Consensus 107 ~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~d------qsg~irvWDl~~~~c~~~--------liPe~~~~i~ 171 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGD------QSGNIRVWDLGENSCTHE--------LIPEDDTSIQ 171 (311)
T ss_pred EEEEeccCcccchhc-cCCCCcceEEecCCcceEEeec------CCCcEEEEEccCCccccc--------cCCCCCccee
Confidence 999999986666666 4679999999999999999987 899999999886421100 1111122233
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCc-------eeeeeeeecccc----------cccccCCCCCceeeec------
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGI-------FPIGKINIHKFH----------VAIPNADEQGTCRLLN------ 221 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-------~~ig~~~i~~~~----------~~~~s~~~~~~~~l~~------ 221 (763)
.+ ...+++.+|+.+...|+.++|..-. .++.+++.+... ..+.+++.+.++++|+
T Consensus 172 sl--~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 172 SL--TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eE--EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 33 2457778888888889998885321 234444433321 1234677888888886
Q ss_pred ---------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ---------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ---------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+..++||.||.+|+.+.+|.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 3688999999999999988775
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1e-16 Score=181.15 Aligned_cols=194 Identities=20% Similarity=0.230 Sum_probs=150.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cC-ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NW-QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~-~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|..++|+|++.++++++.|++|+||++ .. ..+..+. |...|++++|+|+|+.+++|+.|++|+|||+++++++..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 34999999999999999999999999999 43 3455554 888999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...|++++|++++..+++++ .|+.+++||.......+.....++.. .. ......+++++.+++
T Consensus 284 l~~hs~~is~~~f~~d~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~------~~-~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDGNLLVSAS------YDGTIRVWDLETGSKLCLKLLSGAEN------SA-PVTSVQFSPNGKYLL 350 (456)
T ss_pred eeccCCceEEEEECCCCCEEEEcC------CCccEEEEECCCCceeeeecccCCCC------CC-ceeEEEECCCCcEEE
Confidence 999999999999999999999998 79999999998743110011111111 10 112345678999999
Q ss_pred EEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 179 SGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.|+.+++|++... ..+.+..+... . ..+.+..++++|+.++.+..+.
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNL-----------V----RCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCc-----------c----eeEecccccCCCCeEEEEeCCc
Confidence 9999999999997743 33443322210 0 1244556688889888888766
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.74 E-value=8.2e-17 Score=160.46 Aligned_cols=205 Identities=19% Similarity=0.226 Sum_probs=152.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++.|..+.|+|+|..+|+|+.|..|.+|+.. -+..|.++ |.+.|..+.|.+||..|.+++.|.+|+.||+++|+.++
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 4679999999999999999999999999983 45677776 88899999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
++++|..-|+.+.-+.-|. .+.+++ +|+++++||.+.+-.... + +..++...+.+.+...-
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~Sgs------dD~t~kl~D~R~k~~~~t--------~----~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGS------DDGTLKLWDIRKKEAIKT--------F----ENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred hhccccceeeecCccccCCeEEEecC------CCceEEEEeecccchhhc--------c----ccceeEEEEEecccccc
Confidence 9999999999998555554 556777 899999999996421100 0 11223344456677778
Q ss_pred EEEEcCCCcEEEEEcCce---ee--e------eeeecccccccccCCCCCceeeecc----------------------c
Q 004298 177 LCSGDKDGSICFNIFGIF---PI--G------KINIHKFHVAIPNADEQGTCRLLNA----------------------S 223 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~---~i--g------~~~i~~~~~~~~s~~~~~~~~l~~~----------------------~ 223 (763)
..+|+-|+.|++|+...- .+ | .+.+........+.+-+.++++|+- .
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 889999999999986321 10 0 0111111112234456777888771 2
Q ss_pred eeeEEecCCCCEEEEEeecC
Q 004298 224 IYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 224 I~~v~~SpDg~~Llv~~~d~ 243 (763)
-..++|||+++.+-++..|.
T Consensus 269 lL~cswsp~~~~i~ags~dr 288 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADR 288 (338)
T ss_pred cceeeccCCCCccccccccc
Confidence 35689999999988887766
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.74 E-value=2e-16 Score=157.11 Aligned_cols=203 Identities=14% Similarity=0.135 Sum_probs=153.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc------eEEEe-c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ------RLWTI-S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~------~v~~~-~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
..|..++|+|.|+++|.|+-|+...||+++.. ++... . |...+.|..|-+|+ .|++|+.|.+..+||+++|
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG 176 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc
Confidence 47999999999999999999999999999532 33322 2 77889999998865 6889999999999999999
Q ss_pred eEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+.+..|.+|.+.|.+++.+| +++.+++|+ -|+..++||++... ....+.+|.+- ++. ..+.|
T Consensus 177 ~~~~~f~GH~gDV~slsl~p~~~ntFvSg~------cD~~aklWD~R~~~--c~qtF~ghesD-------INs--v~ffP 239 (343)
T KOG0286|consen 177 QQTQVFHGHTGDVMSLSLSPSDGNTFVSGG------CDKSAKLWDVRSGQ--CVQTFEGHESD-------INS--VRFFP 239 (343)
T ss_pred eEEEEecCCcccEEEEecCCCCCCeEEecc------cccceeeeeccCcc--eeEeecccccc-------cce--EEEcc
Confidence 99999999999999999999 889999998 89999999999742 12222333222 222 34668
Q ss_pred CeeEEEEEcCCCcEEEEEcCce-eeeeeee-------ccc----cccc-ccCCCCCceeeec--------------ccee
Q 004298 173 RFSILCSGDKDGSICFNIFGIF-PIGKINI-------HKF----HVAI-PNADEQGTCRLLN--------------ASIY 225 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i-------~~~----~~~~-~s~~~~~~~~l~~--------------~~I~ 225 (763)
++.-+++|+.|++.++|+++.- .+..+.- ... .+.. ..+..+..+.+|+ ..|.
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS 319 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS 319 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence 8889999999999999987652 1221110 000 0111 1334667777887 5799
Q ss_pred eEEecCCCCEEEEEeec
Q 004298 226 KVALSKDLFHLTVLCSG 242 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d 242 (763)
++..+|||..+..++=|
T Consensus 320 cl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 320 CLGVSPDGMAVATGSWD 336 (343)
T ss_pred EEEECCCCcEEEecchh
Confidence 99999999887765443
No 28
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-16 Score=155.34 Aligned_cols=223 Identities=19% Similarity=0.166 Sum_probs=159.5
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
..|++| ++.+.++.+|++|.+++.|.+..||.. ||+++-++. |.+.|.|+..+-+.+.+++|+.|.+++|||++
T Consensus 7 ~GHERp----lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 7 QGHERP----LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccCccc----cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 458888 999999999999999999999999998 999999997 88999999999999999999999999999999
Q ss_pred CCeEEEEecc-----------------------------------------------------cCCceeEEEeecCCCce
Q 004298 92 NGKLLRSLKS-----------------------------------------------------HTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 92 ~g~~~~~l~~-----------------------------------------------------h~~~V~~l~ws~~~~~l 118 (763)
+|+.+.+++. +.+.++.+.|.|-+..+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9998877752 22445555566666666
Q ss_pred eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK 198 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~ 198 (763)
++|. ++|.|..||.++...... ....| ...+..++ ++++..++++|+.|.+-++|+...+.+-+
T Consensus 163 i~Gh------e~G~is~~da~~g~~~v~-s~~~h-------~~~Ind~q--~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 163 IAGH------EDGSISIYDARTGKELVD-SDEEH-------SSKINDLQ--FSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred EEec------CCCcEEEEEcccCceeee-chhhh-------cccccccc--ccCCcceEEecccCccceeeeccceeeEE
Confidence 6655 677777777765211110 00111 11233333 45677899999999999999987765433
Q ss_pred eeecccccccc-----------cCC---------------------------CCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 199 INIHKFHVAIP-----------NAD---------------------------EQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 199 ~~i~~~~~~~~-----------s~~---------------------------~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
--....|.+.. -++ ..+.++-+.++|.+++|+|||+....+.
T Consensus 227 ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 227 TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 22222211110 000 1233444558999999999999888777
Q ss_pred ecCccccccCCCCCCcEEEEEeeccccc
Q 004298 241 SGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 241 ~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
+|+ .+.+..+|.+++.
T Consensus 307 EDG------------~VR~h~Fd~~YF~ 322 (327)
T KOG0643|consen 307 EDG------------YVRLHHFDSNYFD 322 (327)
T ss_pred CCc------------eEEEEEeccchhh
Confidence 665 6667777776653
No 29
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=7.6e-17 Score=184.61 Aligned_cols=221 Identities=16% Similarity=0.252 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC---c------------eEEE----e-cCCCcEEEEEEccCCCEEEEEEcC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW---Q------------RLWT----I-SPGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~------------~v~~----~-~~~~~V~~l~wspDG~~Lasg~~D 82 (763)
.|.|+.|+|||.+||+|++|+.|.||...+ + .-|+ + .|...|..++|+||+.+||+++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 399999999999999999999999999862 1 1121 1 277789999999999999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CC-CCCCcccCCcccccCCc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IP-QMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~-~l~~~~s~~~~~~~~~~ 160 (763)
++|.||+..+.+.+..+++|.+.|..+.|.|-|+++++-+ +|+++++|....- +. .+..++.. ...+
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs------dDrtikvwrt~dw~i~k~It~pf~~-----~~~~ 219 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS------DDRTLKVWRTSDWGIEKSITKPFEE-----SPLT 219 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeec------CCceEEEEEcccceeeEeeccchhh-----CCCc
Confidence 9999999999999999999999999999999999999998 8999999985430 00 00000000 0011
Q ss_pred ccccceecccCCCeeEEEEEcC----CCcEEEEEcCcee-----ee--------eee----------eccccc-----cc
Q 004298 161 DSFRELANSSHQRFSILCSGDK----DGSICFNIFGIFP-----IG--------KIN----------IHKFHV-----AI 208 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~----DG~I~lw~~~~~~-----ig--------~~~----------i~~~~~-----~~ 208 (763)
..+.++.| +|++.+|++... -.++.|..-+.+. +| +++ -..... -.
T Consensus 220 T~f~RlSW--SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 220 TFFLRLSW--SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred ceeeeccc--CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 22223333 345555555431 1122222111111 00 000 000000 12
Q ss_pred ccCCCCCceeeec---------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccc
Q 004298 209 PNADEQGTCRLLN---------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 209 ~s~~~~~~~~l~~---------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
++++.|+++.+|. .+|.+++|||||..|++++.|+ +++++.++-..|-
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG------------tV~~i~Fee~ElG 360 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG------------TVALIHFEEKELG 360 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC------------eEEEEEcchHHhC
Confidence 3556677777775 5899999999999999998887 8889988876554
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.74 E-value=9.4e-17 Score=168.33 Aligned_cols=185 Identities=16% Similarity=0.216 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce--------------------------------EEEec----------C
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQR--------------------------------LWTIS----------P 60 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~--------------------------------v~~~~----------~ 60 (763)
|.++.|+.+|++|++++.|+++.+|+. .|+. +..+. |
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence 999999999999999999999999998 3321 11110 3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCC---------ceeccCCCCCcccCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ---------PSKNDFGNIPTYEDR 131 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~---------~l~s~s~~~~~~~d~ 131 (763)
..+|.++.|+|.|++|+++++|++++||+...+...+.+..|...|..+.|+|+|. .+++++ .|.
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas------~ds 432 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS------FDS 432 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee------cCC
Confidence 45799999999999999999999999999999999999999999999999999763 355665 799
Q ss_pred ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccC
Q 004298 132 TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNA 211 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~ 211 (763)
++++||.....+. .....|...+ ...++++++.++++|+.||.|++|......+-.- .
T Consensus 433 tV~lwdv~~gv~i--~~f~kH~~pV---------ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s-----------~ 490 (524)
T KOG0273|consen 433 TVKLWDVESGVPI--HTLMKHQEPV---------YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS-----------Y 490 (524)
T ss_pred eEEEEEccCCcee--EeeccCCCce---------EEEEecCCCcEEEecCCCCeeEeccccchheeEe-----------e
Confidence 9999998763221 1122233222 3445778999999999999999997444322111 0
Q ss_pred CCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 212 DEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 212 ~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.. ++.|..++|+.+|..+.+..+++
T Consensus 491 ~~-------~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 491 QG-------TGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred cC-------CCeEEEEEEcCCCCEEEEEecCC
Confidence 01 12478999999999999888776
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.73 E-value=4.8e-16 Score=164.91 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
-|.++.|+|||.++|+++.||+|.+|+- +|+++..+. |.+.|.+++|+||++.+++++.|.+++|||+.++++++
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 3999999999999999999999999998 899998885 78899999999999999999999999999999887766
Q ss_pred Eec-------------------------------------------ccCCceeEEEeecCCCceeccCCCCCcccCCcee
Q 004298 98 SLK-------------------------------------------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 98 ~l~-------------------------------------------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~ 134 (763)
++. +|...|++++.++++.++.+|+ .||.|.
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs------yDG~I~ 345 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS------YDGHIN 345 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec------cCceEE
Confidence 553 6889999999999999999998 788888
Q ss_pred ecCCCC
Q 004298 135 FFPPAP 140 (763)
Q Consensus 135 ~wd~~~ 140 (763)
-|+...
T Consensus 346 ~W~~~~ 351 (603)
T KOG0318|consen 346 SWDSGS 351 (603)
T ss_pred EEecCC
Confidence 887643
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=2.5e-15 Score=165.39 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=149.7
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc------eEEEe-----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ------RLWTI-----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~------~v~~~-----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+.|.++++|..+ ..+++++.|+++++|.+... .+... .|++.|+|++.+|+.++||+|+.|++.+||+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 458999998766 78999999999999999541 12211 2889999999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
++.+....++.+|...|+|+.|+++.+.++++| .|+++++|.+... .......||++.+ +...
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S------gD~TvKIW~is~f--SClkT~eGH~~aV---------lra~ 554 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS------GDKTVKIWSISTF--SCLKTFEGHTSAV---------LRAS 554 (775)
T ss_pred ccCceEEEEeeCCccceEEEEeccccceeEecc------CCceEEEEEeccc--eeeeeecCcccee---------Eeee
Confidence 999999999999999999999999999999999 8999999988762 2334456676655 4455
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+-.++..|++++.||-|++|....-.+- .++-.++..|..++-+|++..++.++.|+
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~-----------------~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECE-----------------MTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhh-----------------hhhhhccceeEEEeecCccceeEecCCCe
Confidence 6678889999999999999985543221 11122334677888999988666665554
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.71 E-value=7e-16 Score=186.71 Aligned_cols=206 Identities=13% Similarity=0.182 Sum_probs=152.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---------eEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEc
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---------RLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---------~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdv 90 (763)
.+.|.+++|+|+++++|+|+.|+.|+||+++.. .+..+.+...|.+++|+| ++++||+|+.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 456999999999999999999999999997421 223334556799999998 5789999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
++++.+..+.+|...|+++.|+| ++..+++|+ .|+++++||...... ......+ ..+..+.+
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs------~Dg~v~iWd~~~~~~--~~~~~~~--------~~v~~v~~- 625 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS------DDGSVKLWSINQGVS--IGTIKTK--------ANICCVQF- 625 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc------CCCEEEEEECCCCcE--EEEEecC--------CCeEEEEE-
Confidence 99999999999999999999997 678899998 899999999875311 1111111 01112222
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCcee--eeeeeeccc---------ccccccCCCCCceeeecc----------------
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFP--IGKINIHKF---------HVAIPNADEQGTCRLLNA---------------- 222 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~--ig~~~i~~~---------~~~~~s~~~~~~~~l~~~---------------- 222 (763)
..+++.+|++|+.||.|++|+..... ...+..|.. ...+.+++.|+.+++|+.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 13567899999999999999876432 111111111 112347778999999962
Q ss_pred ----ceeeEEecCCCCEEEEEeecC
Q 004298 223 ----SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 ----~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+..++|+|++.++++++.|+
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 245688999999888887766
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.71 E-value=6.6e-17 Score=170.20 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=125.6
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEc--cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRF--NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|+++.|.| .+.||++++.|+.|+||++ .+..+.++. |...|.+++|+++|..|.+++-|+.+++||+|+|+++.
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 3499999999 8899999999999999999 466777765 88899999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+.. ...++|+.|.|++ ..+.+|+ .|+.|+.||++.. .+......+.+.+ ....+-+.+..
T Consensus 295 ~f~~-~~~~~cvkf~pd~~n~fl~G~------sd~ki~~wDiRs~--kvvqeYd~hLg~i---------~~i~F~~~g~r 356 (503)
T KOG0282|consen 295 RFHL-DKVPTCVKFHPDNQNIFLVGG------SDKKIRQWDIRSG--KVVQEYDRHLGAI---------LDITFVDEGRR 356 (503)
T ss_pred EEec-CCCceeeecCCCCCcEEEEec------CCCcEEEEeccch--HHHHHHHhhhhhe---------eeeEEccCCce
Confidence 9865 5688999999998 5666676 7999999999873 1111111222211 12234477789
Q ss_pred EEEEcCCCcEEEEEcCce
Q 004298 177 LCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~ 194 (763)
+++.+.|+++++|.++..
T Consensus 357 FissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIP 374 (503)
T ss_pred EeeeccCccEEEEEcCCC
Confidence 999999999999987754
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3.5e-16 Score=175.15 Aligned_cols=216 Identities=15% Similarity=0.124 Sum_probs=155.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE------------------------------------------
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLW------------------------------------------ 56 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~------------------------------------------ 56 (763)
+.-+.|+++.|||||++||+|+.|+.|+||.+....+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 34466999999999999999999999999998430000
Q ss_pred -----------Eec---------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeec-CC
Q 004298 57 -----------TIS---------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE-DA 115 (763)
Q Consensus 57 -----------~~~---------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~-~~ 115 (763)
.+. |...|..|.||.++ +|.+++.|.+||||++...++++.| .|.+-|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCC
Confidence 000 22348999999875 9999999999999999999999999 6999999999999 55
Q ss_pred CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee
Q 004298 116 QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 116 ~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
+++++|+ -|+.+|+|++....-. .-.+....+.. .++.|+|+..++|+.+|.+++|......
T Consensus 423 ryFiSGS------LD~KvRiWsI~d~~Vv----------~W~Dl~~lITA--vcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 423 RYFISGS------LDGKVRLWSISDKKVV----------DWNDLRDLITA--VCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred CcEeecc------cccceEEeecCcCeeE----------eehhhhhhhee--EEeccCCceEEEEEeccEEEEEEccCCe
Confidence 8999999 8999999998753110 00111222222 3456778999999999999999644321
Q ss_pred e-eeeee-------------cccccc------cccCCCCCceeeecc----------------ceeeEEecCCCCEEEEE
Q 004298 196 I-GKINI-------------HKFHVA------IPNADEQGTCRLLNA----------------SIYKVALSKDLFHLTVL 239 (763)
Q Consensus 196 i-g~~~i-------------~~~~~~------~~s~~~~~~~~l~~~----------------~I~~v~~SpDg~~Llv~ 239 (763)
. -...+ +.+... ....++|..+|++++ +-...+|+.||++++.+
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 1 11111 111000 112346778888873 33567999999999999
Q ss_pred eecCccccccCCCCCCcEEEEEeeccc
Q 004298 240 CSGQLSQEELGGHGMHGLHCLVLDTSI 266 (763)
Q Consensus 240 ~~d~l~~~~~~~~~~~~l~~~~ld~~~ 266 (763)
+.|. .+|++.++..-
T Consensus 565 seDs------------~VYiW~~~~~~ 579 (712)
T KOG0283|consen 565 SEDS------------WVYIWKNDSFN 579 (712)
T ss_pred ecCc------------eEEEEeCCCCc
Confidence 8766 89999887553
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.69 E-value=4.1e-16 Score=158.32 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=129.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
-+.|.++++.|-...+++|+.|++|.||++ +|+...++. |...|..+++|+--.|+++++.|+.|+-||++..+.++.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 378999999999999999999999999999 777666776 778999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|-+.|.|++..|.-..+++|+ .|.++|+||++.+.+.. ...||...+ ..+. +.+....++
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~g------rDst~RvWDiRtr~~V~--~l~GH~~~V-------~~V~--~~~~dpqvi 293 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGG------RDSTIRVWDIRTRASVH--VLSGHTNPV-------ASVM--CQPTDPQVI 293 (460)
T ss_pred hccccceeEEEeccccceeEEecC------CcceEEEeeecccceEE--EecCCCCcc-------eeEE--eecCCCceE
Confidence 999999999999999999999998 89999999999863321 123444433 1111 112223589
Q ss_pred EEcCCCcEEEEEcC
Q 004298 179 SGDKDGSICFNIFG 192 (763)
Q Consensus 179 sgs~DG~I~lw~~~ 192 (763)
+|+.|++|++|+..
T Consensus 294 t~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLR 307 (460)
T ss_pred EecCCceEEEeeec
Confidence 99999999999743
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.69 E-value=2.1e-15 Score=182.65 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=151.4
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|.+++|+|. +.++|+++.||+|++|++ +++.+..+. |.+.|++++|+| +|.+|++|+.||+|++||+.++..+.
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 35889999984 789999999999999999 566666664 788999999997 89999999999999999999999998
Q ss_pred EecccCCceeEEEee-cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWE-EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws-~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+..+ ..|.++.|. +++..+++|+ .|+.+++||.+...... ....+|... +..+.+ . ++..
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs------~dg~I~iwD~~~~~~~~-~~~~~h~~~-------V~~v~f--~-~~~~ 674 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGS------ADHKVYYYDLRNPKLPL-CTMIGHSKT-------VSYVRF--V-DSST 674 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEe------CCCeEEEEECCCCCccc-eEecCCCCC-------EEEEEE--e-CCCE
Confidence 88754 689999995 5688999998 89999999987532111 111223221 222333 2 3467
Q ss_pred EEEEcCCCcEEEEEcCce-------eeeeeeeccc----------ccccccCCCCCceeeecc-----------------
Q 004298 177 LCSGDKDGSICFNIFGIF-------PIGKINIHKF----------HVAIPNADEQGTCRLLNA----------------- 222 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~-------~ig~~~i~~~----------~~~~~s~~~~~~~~l~~~----------------- 222 (763)
|++|+.||+|++|+.... ++..+..+.. ...+.+++.++.+++|+.
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 999999999999987531 2222222111 112346677888888862
Q ss_pred ----------ceeeEEecCCCCEEEEEeecC
Q 004298 223 ----------SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 ----------~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.|.+++|+|++..+++++.++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 278999999999999887765
No 38
>PTZ00420 coronin; Provisional
Probab=99.68 E-value=3.8e-15 Score=169.24 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=117.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-Cc--------eEEEe-cCCCcEEEEEEccCCCE-EEEEEcCCcEEEE
Q 004298 21 ASQIKIAEWNPE-KDLLAMATEDSKILLHRFN-WQ--------RLWTI-SPGKSVTSLCWRPDGKA-IAVGLEDGTITLH 88 (763)
Q Consensus 21 ~~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-~~--------~v~~~-~~~~~V~~l~wspDG~~-Lasg~~Dg~V~lw 88 (763)
.+.|.+++|+|+ +++||+|+.|++|+||++. +. .+..+ .|...|.+++|+|++.. |++|+.||+|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 345999999997 7899999999999999994 22 12223 27788999999999975 5789999999999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee-
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA- 167 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~- 167 (763)
|+++++.+..+. |...|.++.|+|+|..+++++ .|+.+++||++... ......+|.+.. ....+.
T Consensus 154 Dl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s------~D~~IrIwD~Rsg~--~i~tl~gH~g~~-----~s~~v~~ 219 (568)
T PTZ00420 154 DIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC------VGKHMHIIDPRKQE--IASSFHIHDGGK-----NTKNIWI 219 (568)
T ss_pred ECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe------cCCEEEEEECCCCc--EEEEEecccCCc-----eeEEEEe
Confidence 999998887775 567899999999999999887 79999999998631 111222333211 000011
Q ss_pred cccCCCeeEEEEEcCCC----cEEEEEcCc
Q 004298 168 NSSHQRFSILCSGDKDG----SICFNIFGI 193 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG----~I~lw~~~~ 193 (763)
..+.++.+++++++.|+ +|++|+.+.
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 11235556777766554 799999764
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.7e-16 Score=175.03 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=168.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+++|..++|+|....+.++-..|.|.+|+. -+..+-.+. |.++|++++|+|++.++++|++|.+|++|+..+.+++.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 457999999999999999999999999998 444555554 899999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|-+-|..+.|++.-..+.|+| +|.+|++|+..+. +......||.-++ ++..++|..+.++
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSAS------DDQTIrIWNwqsr--~~iavltGHnHYV---------McAqFhptEDlIV 151 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSAS------DDQTIRIWNWQSR--KCIAVLTGHNHYV---------MCAQFHPTEDLIV 151 (1202)
T ss_pred hccccceeEEeeccCCCceEEEcc------CCCeEEEEeccCC--ceEEEEecCceEE---------EeeccCCccceEE
Confidence 999999999999999999999999 9999999998763 2223344666655 6667889889999
Q ss_pred EEcCCCcEEEEEcCceeeeeeee------------------------------c----------ccccccccCCCCCcee
Q 004298 179 SGDKDGSICFNIFGIFPIGKINI------------------------------H----------KFHVAIPNADEQGTCR 218 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~ig~~~i------------------------------~----------~~~~~~~s~~~~~~~~ 218 (763)
++|-|.+|++|+......+.... | ..-.-+.+++.|..++
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 99999999999865432211110 0 0001123788899999
Q ss_pred eec----------------cceeeEEecCCCCEEEEEeecCcc
Q 004298 219 LLN----------------ASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 219 l~~----------------~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
+|. ..|.++-|.|.-..++..++|+.+
T Consensus 232 lWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred EEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccE
Confidence 986 578999999988888888888754
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.3e-15 Score=167.70 Aligned_cols=217 Identities=17% Similarity=0.265 Sum_probs=158.7
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+|+.| |..++|+|++.++++|++|-.|+||+.. ...++++. |-+-|+.+.|++.-..|.++++|.+|+||+..+
T Consensus 49 eHdGp----VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 49 EHDGP----VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred ccCCc----cceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 36666 9999999999999999999999999994 44566665 778999999999999999999999999999999
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCC----cccCCcc---cc-------
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPG----LVSGDTG---FT------- 156 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~----~~s~~~~---~~------- 156 (763)
++++..+++|...|.|..|+|....++|+| -|.++|+||+..- ....++ ...+... ..
T Consensus 125 r~~iavltGHnHYVMcAqFhptEDlIVSaS------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSAS------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccceEEEec------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 999999999999999999999999999999 8999999997541 111111 0011110 00
Q ss_pred ----cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce---eee----------eeeecccccccccCCCCCceee
Q 004298 157 ----DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF---PIG----------KINIHKFHVAIPNADEQGTCRL 219 (763)
Q Consensus 157 ----~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~---~ig----------~~~i~~~~~~~~s~~~~~~~~l 219 (763)
.+.+-.++. .++++...++++|+.|..|++|-+... ... ..-.|...-.+.+.+.|+++|+
T Consensus 199 K~VLEGHDRGVNw--aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNW--AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eeeecccccccce--EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 111222222 245788889999999999999954332 111 1111222223458899999999
Q ss_pred ec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 220 LN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 220 ~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+ .....++-.|.++.++++...+
T Consensus 277 wDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 277 WDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred EecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 98 2345566677766555554444
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.9e-15 Score=163.07 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=130.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
++-|.+++.+|+..++.++++|-.|++|+. .|.....+. |..-|.+++|+| |.+.+|+++-|++|++|.+....+.
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence 667999999999999999999999999997 344444444 778899999999 8889999999999999999999999
Q ss_pred EEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
.++.+|...|+|+.+-+-| .++++|+ +|.++++||..++. ...+..||+.-+ -..+++|..
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsga------DD~tiKvWDyQtk~--CV~TLeGHt~Nv---------s~v~fhp~l 239 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGA------DDLTIKVWDYQTKS--CVQTLEGHTNNV---------SFVFFHPEL 239 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecC------CCceEEEeecchHH--HHHHhhcccccc---------eEEEecCCC
Confidence 9999999999999997654 6899998 89999999998752 112233444333 223578999
Q ss_pred eEEEEEcCCCcEEEEEcCcee
Q 004298 175 SILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~ 195 (763)
.++++|++||++++|...+|.
T Consensus 240 piiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred cEEEEecCCccEEEecCccee
Confidence 999999999999999766553
No 42
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.67 E-value=6.6e-16 Score=177.00 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=144.2
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEEccC----ce---------EEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 23 QIKIAEWNPEKDLLAMAT--EDSKILLHRFNW----QR---------LWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~----~~---------v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.|.+++.+|+|..+|+|+ .||.+.||+... .. +.+. .|.++|+|+.|+|||++||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 399999999999999999 899998999721 11 1111 2778999999999999999999999999
Q ss_pred EEEccC------------------CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 87 LHDVEN------------------GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 87 lwdve~------------------g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
||.-.. .+++..+.+|.+.|..+.|+|++.++++++ .|+++.+|+..+- .....
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s------~DnsViiwn~~tF--~~~~v 166 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS------LDNSVIIWNAKTF--ELLKV 166 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec------ccceEEEEccccc--eeeee
Confidence 998662 135677889999999999999999999999 8999999998763 33333
Q ss_pred ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEE
Q 004298 149 VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVA 228 (763)
Q Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~ 228 (763)
..+|.+++ -...++|-+++|++-+.|++|++|....|.+...- ..++.... -.+ -+.+++
T Consensus 167 l~~H~s~V---------KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I----t~pf~~~~-~~T------~f~RlS 226 (942)
T KOG0973|consen 167 LRGHQSLV---------KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI----TKPFEESP-LTT------FFLRLS 226 (942)
T ss_pred eecccccc---------cceEECCccCeeeeecCCceEEEEEcccceeeEee----ccchhhCC-Ccc------eeeecc
Confidence 44555555 22346788999999999999999986666544321 11111111 111 267899
Q ss_pred ecCCCCEEEEEe
Q 004298 229 LSKDLFHLTVLC 240 (763)
Q Consensus 229 ~SpDg~~Llv~~ 240 (763)
|||||++|++..
T Consensus 227 WSPDG~~las~n 238 (942)
T KOG0973|consen 227 WSPDGHHLASPN 238 (942)
T ss_pred cCCCcCeecchh
Confidence 999999998754
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.67 E-value=4.6e-16 Score=160.63 Aligned_cols=187 Identities=15% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|..+.|.|+|+.|++|+..|.+.+|+...-..-.+ .|...|+++.|+++|.++++|..+|.|++|+.. -..++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHh
Confidence 4588999999999999999999999999732111111 288999999999999999999999999999965 3444555
Q ss_pred cccC-CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
..|. ..|++++|+|+...++++| +|+++++||........ ..+||.--+ -+..+++...+++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~S------dDg~ikiWdf~~~kee~--vL~GHgwdV---------ksvdWHP~kgLia 238 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCS------DDGTIKIWDFRMPKEER--VLRGHGWDV---------KSVDWHPTKGLIA 238 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEec------CCCeEEEEeccCCchhh--eeccCCCCc---------ceeccCCccceeE
Confidence 5554 8999999999999999998 99999999987643221 112332222 2344677888999
Q ss_pred EEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 179 SGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+|+.|..|++|+-.+-. .-.++..+...|..+.|++++++|+.++.|.
T Consensus 239 sgskDnlVKlWDprSg~-----------------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGS-----------------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EccCCceeEeecCCCcc-----------------hhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 99999999999844321 1112222335689999999999999998776
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.66 E-value=9.3e-15 Score=151.67 Aligned_cols=187 Identities=22% Similarity=0.267 Sum_probs=141.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|+++++++++.||.|.+|++. ++....+. |...+.++.|+|+++++++++.||.|++|++++++.+..+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 349999999999999999999999999994 44444443 6678889999999999999999999999999998888899
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..|...|.++.|++++..+++++ .++.+++|+....... .....+. ..+..+. ++++..++++
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~--~~~~~~~-------~~i~~~~--~~~~~~~l~~ 152 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSS------RDKTIKVWDVETGKCL--TTLRGHT-------DWVNSVA--FSPDGTFVAS 152 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEec------CCCeEEEEECCCcEEE--EEeccCC-------CcEEEEE--EcCcCCEEEE
Confidence 99999999999999988888886 6999999998732100 0011111 1122233 3455678888
Q ss_pred EcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++.||.|++|+..... ...+. .....+.+++|+|+++.+++++.++
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLT------------------GHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EcCCCcEEEEEccccccceeEe------------------cCccccceEEECCCcCEEEEecCCC
Confidence 8889999999865321 11111 1123578999999998888887654
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-14 Score=146.81 Aligned_cols=192 Identities=17% Similarity=0.145 Sum_probs=149.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC-CcEEEEEEccCCCEEEEEEc--CCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG-KSVTSLCWRPDGKAIAVGLE--DGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~--Dg~V~lwdve~g~~~ 96 (763)
.++|.++.|+++|+++++++.|.++++|+. ++.++.++... -.|..++|-.....+..++. |.+|+..++.+.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 456999999999999999999999999999 77788777643 35777888776666666664 999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+.+.+|...|+.+..+|-+..+.+++ .|+++++||++.+...-.-...+ . ...+++|.+-+
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S------~D~tvrLWDlR~~~cqg~l~~~~-~------------pi~AfDp~GLi 154 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSS------LDKTVRLWDLRVKKCQGLLNLSG-R------------PIAAFDPEGLI 154 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecc------cCCeEEeeEecCCCCceEEecCC-C------------cceeECCCCcE
Confidence 99999999999999999999999998 89999999999532221111111 1 11356799999
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+|+|...+.|++|+.++|.-|.+....... +. ......+.|||||+++++.+..+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--------~~----~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITD--------ND----EAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCC--------CC----ccceeeeEEcCCCCEEEEEeCCC
Confidence 999998889999999988666554322110 11 12356899999999999998766
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=9.8e-16 Score=156.26 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=160.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l 99 (763)
.|+.+-|+|+-.++|+++.|++|++|+. +|+....+. |.+.|..|+|+..|+++|+++.|-.+++||.++ .++++.+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh
Confidence 4999999999999999999999999999 888766665 777899999999999999999999999999986 5677778
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+|...|.++.|-|.|.++++++ .|.+++.|+..+. ...+++ +..++ -......++.++
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~s------rD~tik~We~~tg~cv~t~~~----h~ewv---------r~v~v~~DGti~ 250 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCS------RDNTIKAWECDTGYCVKTFPG----HSEWV---------RMVRVNQDGTII 250 (406)
T ss_pred cCcccceeeEEEEecCCeeeecc------cccceeEEecccceeEEeccC----chHhE---------EEEEecCCeeEE
Confidence 89999999999999999999998 9999999998864 222222 22222 122356889999
Q ss_pred EEEcCCCcEEEEEcCce------eeeeeeec--------------cccc------ccccCCCCCceeeec----------
Q 004298 178 CSGDKDGSICFNIFGIF------PIGKINIH--------------KFHV------AIPNADEQGTCRLLN---------- 221 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~------~ig~~~i~--------------~~~~------~~~s~~~~~~~~l~~---------- 221 (763)
++++.|.++++|..... ..+..++. ...+ ...+++.|+++|+|+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 99999999999975543 11111110 0000 123566789999998
Q ss_pred ----cceeeEEecCCCCEEEEEeecC
Q 004298 222 ----ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ----~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|..++|+|-|++|+.++.|+
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCC
Confidence 4689999999999999998887
No 47
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.65 E-value=2.3e-15 Score=159.30 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=141.8
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc----eEEEec--CC--CcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 16 FDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ----RLWTIS--PG--KSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~----~v~~~~--~~--~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
..|..-+.+++-+|+|.. ..+.+++.||++++|+++.. .|.... .+ -.++..+|+|||+.||.|+.||.|.
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 334444669999999966 67889999999999999432 233322 22 2578999999999999999999999
Q ss_pred EEEccCCe---EEEEecccCC--ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 87 LHDVENGK---LLRSLKSHTV--AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 87 lwdve~g~---~~~~l~~h~~--~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
+|+..+.. ..+.-+.|.. .|+||.|+++|+++++-+ .|.++++||++.....+.... +...
T Consensus 343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLKvWDLrq~kkpL~~~t--------gL~t 408 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLKVWDLRQFKKPLNVRT--------GLPT 408 (641)
T ss_pred eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCceeeeeccccccchhhhc--------CCCc
Confidence 99975321 2233346766 899999999999999988 899999999987533332111 1112
Q ss_pred cccceecccCCCeeEEEEEc------CCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCC
Q 004298 162 SFRELANSSHQRFSILCSGD------KDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLF 234 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs------~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~ 234 (763)
.+....++++|+..++++|+ ..|++.+|+.-.|. +.++.+. +++|..+.|.|-.+
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------------------~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------------------TASVVRCLWHPKLN 470 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC------------------CceEEEEeecchhh
Confidence 23344567788989999997 34666766644442 2233221 35688999999999
Q ss_pred EEEEEeecCcc
Q 004298 235 HLTVLCSGQLS 245 (763)
Q Consensus 235 ~Llv~~~d~l~ 245 (763)
++++++.++..
T Consensus 471 Qi~~gsgdG~~ 481 (641)
T KOG0772|consen 471 QIFAGSGDGTA 481 (641)
T ss_pred heeeecCCCce
Confidence 99999888744
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5e-15 Score=162.07 Aligned_cols=214 Identities=20% Similarity=0.287 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
...|+++.|+|+|..||+|..+|.|.||+. +-.++-.+. |...|-+++|+ +..+.+|+.||.|..+|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 345999999999999999999999999998 334444443 67899999998 6789999999999999999876655
Q ss_pred E-ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 S-LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~-l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
. +.+|...|..+.|++++.++++|+ .|+.+.+||.....+. .....| .+.+..+.|++... ++
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGg------nDN~~~Iwd~~~~~p~--~~~~~H-------~aAVKA~awcP~q~-~l 358 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGG------NDNVVFIWDGLSPEPK--FTFTEH-------TAAVKALAWCPWQS-GL 358 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCC------CccceEeccCCCcccc--EEEecc-------ceeeeEeeeCCCcc-Cc
Confidence 4 889999999999999999999999 8999999998542222 122233 34456677887666 58
Q ss_pred EEEEc--CCCcEEEEEcCc-eeeeeeeecc----cccc-----c--ccCCCCCceeeec--------------cceeeEE
Q 004298 177 LCSGD--KDGSICFNIFGI-FPIGKINIHK----FHVA-----I--PNADEQGTCRLLN--------------ASIYKVA 228 (763)
Q Consensus 177 L~sgs--~DG~I~lw~~~~-~~ig~~~i~~----~~~~-----~--~s~~~~~~~~l~~--------------~~I~~v~ 228 (763)
||+|+ .|++|++|+... -.+..++... +... + ..+-.+..+.+|. ..|..++
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA 438 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence 88875 799999997432 1222221110 1000 1 1233455677776 4689999
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
+||||..+++++.|. +++++.+-.
T Consensus 439 ~SPdg~~i~t~a~DE------------Tlrfw~~f~ 462 (484)
T KOG0305|consen 439 LSPDGETIVTGAADE------------TLRFWNLFD 462 (484)
T ss_pred ECCCCCEEEEecccC------------cEEeccccC
Confidence 999999999998876 666765443
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.65 E-value=2.5e-14 Score=148.47 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=144.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+..+.|+|+++++++++.+|.|.+|++.. +.+..+. +...|.++.|+|+++++++++.||.|++||+++++....+.
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 478999999999999999999999999954 5555554 56689999999999999999989999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.|...|.++.|+|++.++++++ .++.+++||...... ......+. ..+..+ .+.++++.++++
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~d~~~~~~--~~~~~~~~-------~~i~~~--~~~~~~~~l~~~ 195 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSS------QDGTIKLWDLRTGKC--VATLTGHT-------GEVNSV--AFSPDGEKLLSS 195 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEc------CCCcEEEEEcccccc--ceeEecCc-------cccceE--EECCCcCEEEEe
Confidence 9999999999999988888886 699999999874211 11111111 112223 344666778888
Q ss_pred cCCCcEEEEEcCce-eeeeeeeccc----------ccccccCCCCCceeeec--------------cceeeEEecCCCCE
Q 004298 181 DKDGSICFNIFGIF-PIGKINIHKF----------HVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFH 235 (763)
Q Consensus 181 s~DG~I~lw~~~~~-~ig~~~i~~~----------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~ 235 (763)
+.+|.|++|+.... ....+..+.. ..-..+++.++.+++|+ ..|.+++|+|+++.
T Consensus 196 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (289)
T cd00200 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275 (289)
T ss_pred cCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCE
Confidence 88999999987642 1122211110 00111222355566655 24666777777777
Q ss_pred EEEEeecC
Q 004298 236 LTVLCSGQ 243 (763)
Q Consensus 236 Llv~~~d~ 243 (763)
+++++.++
T Consensus 276 l~~~~~d~ 283 (289)
T cd00200 276 LASGSADG 283 (289)
T ss_pred EEEecCCC
Confidence 66665543
No 50
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.9e-14 Score=143.10 Aligned_cols=239 Identities=17% Similarity=0.244 Sum_probs=161.9
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.+.|....|..+.|+|.++.|++++.||++++|+...+ ....++++.++.+.+|.++ ..+++|+.||.|+.+|+.++
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC
Confidence 344555577999999999998889999999999999554 3345679999999999984 57899999999999999977
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc---------ccCCccccc-------
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL---------VSGDTGFTD------- 157 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~---------~s~~~~~~~------- 157 (763)
+.. .+-.|..+|.||...+....+++|+ +|+++++||.+.+....... ..++.-.+.
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~~vIsgs------WD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVGCVISGS------WDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVL 158 (323)
T ss_pred cce-eeccCCCceEEEEeeccCCeEEEcc------cCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEE
Confidence 654 4557999999999998878888998 99999999998531111000 000000000
Q ss_pred --------------CC--cccccceecccCCCeeEEEEEcCCCcEEEEEcCc------------------------eeee
Q 004298 158 --------------DS--EDSFRELANSSHQRFSILCSGDKDGSICFNIFGI------------------------FPIG 197 (763)
Q Consensus 158 --------------~~--~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~------------------------~~ig 197 (763)
.+ ...+.++.. -|++.=.++++-||.|.+=.++. +++.
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~--~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN 236 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVAL--VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN 236 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEE--ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence 00 001111221 23333466667777776542221 2344
Q ss_pred eeeecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 198 KINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 198 ~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
.+..|.....+.+++.||.+-+|+ .+|.+++||.||..|+++++-.--....+......+++..+.
T Consensus 237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~ 316 (323)
T KOG1036|consen 237 AIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLT 316 (323)
T ss_pred eeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecc
Confidence 455555555567999999999998 469999999999999998774322222223334456655543
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.64 E-value=8.1e-16 Score=162.06 Aligned_cols=199 Identities=19% Similarity=0.211 Sum_probs=150.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g 93 (763)
|.++ |..++|+++|..+.+++.|+.|++|+. +|+.+..+..+..++|+.|+||+ +.+++|+.|+.|+.||+++|
T Consensus 257 H~k~----Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 257 HRKP----VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred chhh----hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 5566 999999999999999999999999999 89999999999999999999998 89999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC----------CCC---CcccCCcccccCCc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP----------QMP---GLVSGDTGFTDDSE 160 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~----------~l~---~~~s~~~~~~~~~~ 160 (763)
++++.+..|-+.|..+.|-++|+.+++.+ +|+++++|+...+.+ .+| .+..+..-......
T Consensus 333 kvvqeYd~hLg~i~~i~F~~~g~rFissS------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 333 KVVQEYDRHLGAILDITFVDEGRRFISSS------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred HHHHHHHhhhhheeeeEEccCCceEeeec------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 99999999999999999999999999998 899999997653211 011 00000000000000
Q ss_pred ------------------------ccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCc
Q 004298 161 ------------------------DSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGT 216 (763)
Q Consensus 161 ------------------------~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~ 216 (763)
..=..+...+++++.+|++|+.||.+.+|++..-..- +.
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~-----------------~~ 469 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV-----------------SK 469 (503)
T ss_pred ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh-----------------hc
Confidence 0011244567899999999999999999996653221 11
Q ss_pred eeeeccceeeEEecCCCCEEEEEee
Q 004298 217 CRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 217 ~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++.+++++..+.|.|-...-++.|.
T Consensus 470 lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred cccCCcceEEEEecCCCcceeEecc
Confidence 2223356777888887666555543
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.6e-15 Score=146.53 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=137.6
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc--cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF--NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.+..++||+.. +.+++++.||++++|++ ...++..++ |..+|.++.|++ +++.+.+++.||+|+||+..-++.+
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 458899999965 77888999999999997 445666665 889999999999 7778888999999999999989999
Q ss_pred EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.++.+|.+.|....|+|.. ..++++| .|++.++||.+.+-..+. ...|. ..+.+..|+. -+.+
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~S------gd~~l~lwdvr~~gk~~~--i~ah~-------~Eil~cdw~k-y~~~ 204 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASAS------GDGTLRLWDVRSPGKFMS--IEAHN-------SEILCCDWSK-YNHN 204 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEcc------CCceEEEEEecCCCceeE--EEecc-------ceeEeecccc-cCCc
Confidence 9999999999999999965 5778887 899999999876421111 11111 1122222322 3457
Q ss_pred EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 176 ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++|+.|+.|+.|+.......-..+.. + .-.|..+.|||--..+++.++
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL~g---h-------------~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFELNG---H-------------GLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred EEEecCCCceEEEEehhhccccceeecC---C-------------ceEEEEEecCcchhhHhhhcc
Confidence 9999999999999998876533222111 0 124667777776555555443
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=8.7e-15 Score=151.25 Aligned_cols=215 Identities=17% Similarity=0.164 Sum_probs=152.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---EEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---LWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.++|+-+.|||+|++||+++.|.+..+|.. .-.+ ..++ .|..+|..+.||||.++|++++.|..+++||+.+|..
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence 367999999999999999999999999998 3222 1222 2778999999999999999999999999999999999
Q ss_pred EEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC---------CCCC---cccCCcccc---c--
Q 004298 96 LRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP---------QMPG---LVSGDTGFT---D-- 157 (763)
Q Consensus 96 ~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~---------~l~~---~~s~~~~~~---~-- 157 (763)
.+.+.. |...+.+++|.|||..+++|+ .|+++..||...... ++.. +..|..... +
T Consensus 304 ~~~y~~~~~~S~~sc~W~pDg~~~V~Gs------~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 304 RHLYPSGLGFSVSSCAWCPDGFRFVTGS------PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred hhhcccCcCCCcceeEEccCCceeEecC------CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 988753 357899999999999999998 789999998764210 0000 001110000 0
Q ss_pred ---------------CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce---------eeeeeeeccc-----cccc
Q 004298 158 ---------------DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF---------PIGKINIHKF-----HVAI 208 (763)
Q Consensus 158 ---------------~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~---------~ig~~~i~~~-----~~~~ 208 (763)
..+..+ ...+.+.++++.++.-.+..|++|++.-. .-+.+-++.. ..-+
T Consensus 378 i~l~~~e~~~dr~lise~~~i--ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPI--TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred eeeechhhhhhhccccccCce--eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 001111 22334567778888888999999976431 1122222211 1123
Q ss_pred ccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 209 PNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 209 ~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|+.|+.+.+|| ..|.+++|+|...++++.++|+
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 5788889999998 4688999999888888877654
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.62 E-value=2.8e-14 Score=145.91 Aligned_cols=215 Identities=17% Similarity=0.300 Sum_probs=159.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|+++.||-+|.+||+|..+|.|.||.. ++...|.+. ....+.=++|+|-+.+|+.|+.||.|..|.+.++...+.+.
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 4999999999999999999999999999 777888886 66778889999999999999999999999999988889999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC--CCC--------C---cccCCccccc----------
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMP--------G---LVSGDTGFTD---------- 157 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~--------~---~~s~~~~~~~---------- 157 (763)
+|+.+++|=.|.|+|+.+.++. .|+++++|+..+..+ ++. . ...+.+.+..
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGY------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred CCCCCcccccccCCCceEEEEe------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 9999999999999999999996 899999999865211 110 0 0001000000
Q ss_pred -------------------CCccccccee-cccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeeccc---------cccc
Q 004298 158 -------------------DSEDSFRELA-NSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKF---------HVAI 208 (763)
Q Consensus 158 -------------------~~~~~~~~~~-~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~---------~~~~ 208 (763)
+.+....++. ..++....+.++|+-||+|.||++.......+-.+.. ....
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l 341 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYL 341 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchh
Confidence 0001111111 1123456789999999999999876653322221111 1223
Q ss_pred ccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 209 PNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 209 ~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.++..++.++.|+ ..|.+++++||.+.++.++.|.
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred eeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 4667788999998 3699999999988888776554
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.62 E-value=7.9e-14 Score=142.59 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=125.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++.+|+.+++|+|+.|..-.+|++ +|..+..+. |+..|+++.|+.||.+||+|..+|.|+||.+.+|.....+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 34999999999999999999999999999 666555554 8999999999999999999999999999999999999888
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
...-..|.=+.|+|.+..++.|+ .||.+-+|.+..+ ......+|+.... ..-.+.|+++.+++
T Consensus 145 ~~e~~dieWl~WHp~a~illAG~------~DGsvWmw~ip~~--~~~kv~~Gh~~~c---------t~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHPRAHILLAGS------TDGSVWMWQIPSQ--ALCKVMSGHNSPC---------TCGEFIPDGKRILT 207 (399)
T ss_pred ecccCceEEEEecccccEEEeec------CCCcEEEEECCCc--ceeeEecCCCCCc---------ccccccCCCceEEE
Confidence 75557788899999999999998 8999999988763 1112233443332 22234577999999
Q ss_pred EcCCCcEEEEE
Q 004298 180 GDKDGSICFNI 190 (763)
Q Consensus 180 gs~DG~I~lw~ 190 (763)
|..||+|++|+
T Consensus 208 gy~dgti~~Wn 218 (399)
T KOG0296|consen 208 GYDDGTIIVWN 218 (399)
T ss_pred EecCceEEEEe
Confidence 99999999995
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.61 E-value=2.7e-14 Score=140.09 Aligned_cols=220 Identities=15% Similarity=0.182 Sum_probs=145.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEe---cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTI---SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~---~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+|.+++|+.+|..+|+|+.|+++.+|++...+. ... .|+..|-.++|+| ....+|+++.|.+|++||++.+++++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 499999999999999999999999999954432 222 2677899999998 66799999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-----------ccCCccccc-C-------
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-----------VSGDTGFTD-D------- 158 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-----------~s~~~~~~~-~------- 158 (763)
.+.. ...-.-+.|+|+|.+++.++ .|..+.+.|.+......... .+.+--|.+ +
T Consensus 102 ~i~~-~~eni~i~wsp~g~~~~~~~------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 102 RIET-KGENINITWSPDGEYIAVGN------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred Eeec-cCcceEEEEcCCCCEEEEec------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 8865 34445688999999999988 78888888776521100000 000000000 0
Q ss_pred -----------CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeE
Q 004298 159 -----------SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKV 227 (763)
Q Consensus 159 -----------~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v 227 (763)
..-..++++..++|.++++++|+.|..+.+|+.+-..+-+. +.-.+-+|..+
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~-----------------isRldwpVRTl 237 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC-----------------ISRLDWPVRTL 237 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee-----------------eccccCceEEE
Confidence 00112234444556666666666666666665443221110 11112478999
Q ss_pred EecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 228 ALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 228 ~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
+||.||++|+.+++|..++- .....+..++-++.+.+.+
T Consensus 238 SFS~dg~~lASaSEDh~IDI-A~vetGd~~~eI~~~~~t~ 276 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDI-AEVETGDRVWEIPCEGPTF 276 (313)
T ss_pred EeccCcceeeccCccceEEe-EecccCCeEEEeeccCCce
Confidence 99999999999998876532 1233455677776665544
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.2e-14 Score=153.73 Aligned_cols=205 Identities=13% Similarity=0.168 Sum_probs=144.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE-Ee-cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLW-TI-SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~-~~-~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.++.|..||.++|.|...|.|+||+.+...+. .+ .|..+|..+.|+| |++.+++|++|+.+++||+.++.....+
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 3999999999999999999999999996543222 22 2778999999999 5668888889999999999998886689
Q ss_pred cccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
.+|++.|.|.+|+|... .++||+ .|++||+||.+...........+. .+..+. +-+.+..++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGs------YDg~vrl~DtR~~~~~v~elnhg~---------pVe~vl--~lpsgs~ia 212 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGS------YDGKVRLWDTRSLTSRVVELNHGC---------PVESVL--ALPSGSLIA 212 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecC------CCceEEEEEeccCCceeEEecCCC---------ceeeEE--EcCCCCEEE
Confidence 99999999999999765 678888 899999999986422221111111 111121 224555666
Q ss_pred EEcCCCcEEEEEcCc--ee----------eeeeeecccccccccCCCCCceeeec-------------cceeeEEecCCC
Q 004298 179 SGDKDGSICFNIFGI--FP----------IGKINIHKFHVAIPNADEQGTCRLLN-------------ASIYKVALSKDL 233 (763)
Q Consensus 179 sgs~DG~I~lw~~~~--~~----------ig~~~i~~~~~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg 233 (763)
+++ ...|++|+.-. .. +-+..+........+++-|+.+++++ ++|.+++.|||+
T Consensus 213 sAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 213 SAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDD 291 (487)
T ss_pred EcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCC
Confidence 655 45677776331 11 11111111112234566666666654 689999999999
Q ss_pred CEEEEEeecCcc
Q 004298 234 FHLTVLCSGQLS 245 (763)
Q Consensus 234 ~~Llv~~~d~l~ 245 (763)
+.++++.+++++
T Consensus 292 ~t~viGmsnGlv 303 (487)
T KOG0310|consen 292 QTVVIGMSNGLV 303 (487)
T ss_pred ceEEEeccccee
Confidence 999999888754
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.60 E-value=8.7e-15 Score=146.23 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=145.1
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc------------------eE-EEe-cCCCcEEEEEEccCC
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ------------------RL-WTI-SPGKSVTSLCWRPDG 73 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~------------------~v-~~~-~~~~~V~~l~wspDG 73 (763)
..|..+ +.+.+|||||.++|+|+.|..|+|.+...- ++ .++ .|.++|+++.|+|..
T Consensus 109 t~HK~~----cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 109 TSHKSP----CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eecccc----eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345555 999999999999999999999999997410 11 121 266789999999999
Q ss_pred CEEEEEEcCCcEEEEEccCCeEEEEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCC-ccc
Q 004298 74 KAIAVGLEDGTITLHDVENGKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-LVS 150 (763)
Q Consensus 74 ~~Lasg~~Dg~V~lwdve~g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-~~s 150 (763)
+.|++|+.|++|+++|.......+.++ ....+|.+++|+|.|.++..|. +-.++++||+.+...-... ...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT------dHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT------DHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec------CCCceeEEeccceeEeeecCccc
Confidence 999999999999999987543332222 2346899999999999999987 6788999998863211111 112
Q ss_pred CCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEe
Q 004298 151 GDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVAL 229 (763)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~ 229 (763)
+++..+ .+...++.+++.++|+.||.|++|+--+-.+ .++. -..++ +.|.+..|
T Consensus 259 qht~ai---------~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------~AH~g---------sevcSa~F 313 (430)
T KOG0640|consen 259 QHTGAI---------TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-------NAHGG---------SEVCSAVF 313 (430)
T ss_pred ccccce---------eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-------hhcCC---------ceeeeEEE
Confidence 333322 2334568889999999999999997221111 1110 00111 35788999
Q ss_pred cCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 230 SKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 230 SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
+.||++++..+.|. .+++|.+-++
T Consensus 314 tkn~kyiLsSG~DS------------~vkLWEi~t~ 337 (430)
T KOG0640|consen 314 TKNGKYILSSGKDS------------TVKLWEISTG 337 (430)
T ss_pred ccCCeEEeecCCcc------------eeeeeeecCC
Confidence 99999999887766 6677776654
No 59
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.1e-14 Score=148.80 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=130.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.++.|=|.|+.+++++.|.+|+.|++ +|-.+.++. |.+.|..++.+.||..+|+++.|.+|++|-+.++++...++
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 3999999999999999999999999999 788888886 77899999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCC---------------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 101 SHTVAVVCLNWEEDA---------------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~---------------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
.|+-+|.|++|.|.. +++.+++ .|++|++||+... .+.-...+|...+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S------rDktIk~wdv~tg--~cL~tL~ghdnwV--------- 337 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS------RDKTIKIWDVSTG--MCLFTLVGHDNWV--------- 337 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeec------ccceEEEEeccCC--eEEEEEeccccee---------
Confidence 999999999999853 2344444 8999999999864 2222233444443
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCcee
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
-...+++.|++|+++..|+++++|++....
T Consensus 338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred eeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 223467899999999999999999976543
No 60
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=6.3e-15 Score=162.24 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=128.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
|+|. |.+++.+|+..++|+|+.|.+.+||++. .+..-.+. |...|.|+.|+|..+.+|+++.|++|+||.+++.
T Consensus 462 HdKd----IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 462 HDKD----INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred hccc----ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence 7777 9999999999999999999999999995 44444554 8889999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.++.++.+|+..|..+.|-.++..++|++ .||.+++|+..+.-. ......|.. .+..+. ..+.
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~------adGliKlWnikt~eC--~~tlD~H~D-------rvWaL~--~~~~ 600 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAG------ADGLIKLWNIKTNEC--EMTLDAHND-------RVWALS--VSPL 600 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEecc------CCCcEEEEeccchhh--hhhhhhccc-------eeEEEe--ecCc
Confidence 99999999999999999999999999988 899999999987421 112222222 222222 3466
Q ss_pred eeEEEEEcCCCcEEEEE
Q 004298 174 FSILCSGDKDGSICFNI 190 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~ 190 (763)
.+.+++|+.||.|.+|-
T Consensus 601 ~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEecCCCeEEEEee
Confidence 67899999999999994
No 61
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.4e-14 Score=152.65 Aligned_cols=207 Identities=11% Similarity=0.135 Sum_probs=166.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+.+|+++.++|+...+.++-.+|.|.||+.+.|. +..+. ...+|++..|-+--+.+++|++|..|++|+..+++-++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence 4579999999999999999999999999996554 44454 567889999999889999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-CeeEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L 177 (763)
+..|.+-|.|++.+|...++.++| +|-++++|+-.... .+...+.||..++ ++.+++| +.+.+
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsS------DDm~iKlW~we~~w-a~~qtfeGH~HyV---------Mqv~fnPkD~ntF 156 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSS------DDMTIKLWDWENEW-ACEQTFEGHEHYV---------MQVAFNPKDPNTF 156 (794)
T ss_pred eeccccceeeeeecCCCCeEEecC------CccEEEEeeccCce-eeeeEEcCcceEE---------EEEEecCCCccce
Confidence 999999999999999999999999 89999999987642 2334456676665 4444443 44789
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeeccc------------ccccccCCCCCceeeec--------------cceeeEEec
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKF------------HVAIPNADEQGTCRLLN--------------ASIYKVALS 230 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~------------~~~~~s~~~~~~~~l~~--------------~~I~~v~~S 230 (763)
++++-|++|++|.++.. +.-++.-|.. .+...+++.|.++++|+ ..|..++|.
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence 99999999999988764 2222222211 12235788889999998 468889999
Q ss_pred CCCCEEEEEeecC
Q 004298 231 KDLFHLTVLCSGQ 243 (763)
Q Consensus 231 pDg~~Llv~~~d~ 243 (763)
|....++.+++|+
T Consensus 237 p~lpiiisgsEDG 249 (794)
T KOG0276|consen 237 PELPIIISGSEDG 249 (794)
T ss_pred CCCcEEEEecCCc
Confidence 9988888888877
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=4e-14 Score=155.91 Aligned_cols=199 Identities=15% Similarity=0.177 Sum_probs=153.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc------C--ceEEEecC------CCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN------W--QRLWTISP------GKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~------~--~~v~~~~~------~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.+.|+.++.+||+..+++|+.|.+|++|++. | .++..+.| ...|.|+.+||||++||+|--|++|+
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 3459999999999999999999999999972 2 23344443 35799999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+|-+.+-+..-++-+|.-||.||..+||+..+++|| .|+++++|-..- .. .|.++. ..++++..+
T Consensus 534 VyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS------ADKnVKiWGLdF--GD------CHKS~f-AHdDSvm~V 598 (888)
T KOG0306|consen 534 VYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS------ADKNVKIWGLDF--GD------CHKSFF-AHDDSVMSV 598 (888)
T ss_pred EEEecceeeeeeecccccceeEEeccCCcCeEEecc------CCCceEEecccc--ch------hhhhhh-cccCceeEE
Confidence 999999999999999999999999999999999999 899999996642 11 122222 112233333
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccc
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
. +-|+...+.+++.||.|+-|+-..|..-.. +.-++..|++++.+|+|.+++.++.|.
T Consensus 599 ~--F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-----------------L~~H~~ev~cLav~~~G~~vvs~shD~--- 656 (888)
T KOG0306|consen 599 Q--FLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-----------------LDGHHSEVWCLAVSPNGSFVVSSSHDK--- 656 (888)
T ss_pred E--EcccceeEEEecCcceEEeechhhhhhhee-----------------eccchheeeeeEEcCCCCeEEeccCCc---
Confidence 3 345667899999999999998776643221 112235688999999999999887766
Q ss_pred cccCCCCCCcEEEEEeecc
Q 004298 247 EELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld~~ 265 (763)
.|.++..+-.
T Consensus 657 ---------sIRlwE~tde 666 (888)
T KOG0306|consen 657 ---------SIRLWERTDE 666 (888)
T ss_pred ---------eeEeeeccCc
Confidence 6777765543
No 63
>PTZ00421 coronin; Provisional
Probab=99.59 E-value=3.8e-14 Score=160.15 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=120.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|.+++|+|++ ++||+++.|++|+||++ +++.+..+. |...|.+++|+|||++|++|+.||+|+|||+++++.+..
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 459999999986 79999999999999999 566666665 778899999999999999999999999999999999999
Q ss_pred ecccCCc-eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVA-VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~-V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|.+. +..+.|.+++..+++++.+ ...|+.+++||.+........ ...+... ......+++++++|
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~Dr~VklWDlr~~~~p~~~-~~~d~~~--------~~~~~~~d~d~~~L 274 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCS--KSQQRQIMLWDTRKMASPYST-VDLDQSS--------ALFIPFFDEDTNLL 274 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecC--CCCCCeEEEEeCCCCCCceeE-eccCCCC--------ceEEEEEcCCCCEE
Confidence 9888764 4577899987777654311 125899999998753211110 0001000 01122345667778
Q ss_pred EEEc-CCCcEEEEEcCc
Q 004298 178 CSGD-KDGSICFNIFGI 193 (763)
Q Consensus 178 ~sgs-~DG~I~lw~~~~ 193 (763)
++|+ .||+|++|++..
T Consensus 275 ~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEEeCCCeEEEEEeeC
Confidence 8777 599999998654
No 64
>PTZ00420 coronin; Provisional
Probab=99.58 E-value=8.4e-14 Score=158.32 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=118.5
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDL-LAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++.. +|+++.|++|+||++ +++.+..+.+...|.+++|+|||++|++++.|+.|+|||+++++.+.++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45999999999865 578999999999999 6777777777788999999999999999999999999999999999999
Q ss_pred cccCCceeEE-----EeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc-cCCC
Q 004298 100 KSHTVAVVCL-----NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS-SHQR 173 (763)
Q Consensus 100 ~~h~~~V~~l-----~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~-~~~~ 173 (763)
.+|.+.+.+. .|++++.++++++.+- ..++++++||.+.....+. ....+. ....+... ..+.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--~~~R~VkLWDlr~~~~pl~-~~~ld~--------~~~~L~p~~D~~t 274 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSK--NNMREMKLWDLKNTTSALV-TMSIDN--------ASAPLIPHYDEST 274 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCC--CCccEEEEEECCCCCCceE-EEEecC--------CccceEEeeeCCC
Confidence 9998765433 3457888887765110 0235899999885222111 001010 00111111 2355
Q ss_pred eeEEEEEcCCCcEEEEEcCc
Q 004298 174 FSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~ 193 (763)
+.++++|+.|++|++|.+..
T Consensus 275 g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCEEEEEECCCeEEEEEccC
Confidence 77899999999999998653
No 65
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=5.2e-14 Score=136.84 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=139.6
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEccCceEEEe-----cCCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFNWQRLWTI-----SPGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~~~~v~~~-----~~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~ 92 (763)
++|..++|-. -|.+||+++.||.|.||+-.++ -|+- .|...|++++|.|. |-.||+|++||.|.|.+..+
T Consensus 57 GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 57 GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred CCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 4499999964 6899999999999999998544 3332 27789999999994 56899999999999999864
Q ss_pred C-e-E-EEEecccCCceeEEEeecC---C-----------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 93 G-K-L-LRSLKSHTVAVVCLNWEED---A-----------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 93 g-~-~-~~~l~~h~~~V~~l~ws~~---~-----------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
. . . .+....|.-.|++++|.|. | +.+++|+ -|..+++|......-.+.....+|+.+
T Consensus 136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG------cDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG------CDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC------CccceeeeecCCcchhhhhhhhhcchh
Confidence 3 2 2 2335679999999999996 3 3477777 799999998776433333335566666
Q ss_pred ccCCcccccceecccCC--CeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 156 TDDSEDSFRELANSSHQ--RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~--~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
+ +.+.|++.. ....|++++.||++.||..+ ...+.... ..+.-+...+.+++||..|
T Consensus 210 V-------RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~-------------tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 210 V-------RDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKK-------------TLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred h-------hhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccc-------------cccccCCcceEEEEEeccc
Confidence 6 234444432 23689999999999999755 22222211 0111123458899999999
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
+.|.+.+.+.
T Consensus 269 n~LaVs~GdN 278 (299)
T KOG1332|consen 269 NILAVSGGDN 278 (299)
T ss_pred cEEEEecCCc
Confidence 9999887654
No 66
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.57 E-value=1.6e-14 Score=146.84 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=131.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|.+.|.|+++.|-.++|++|+.|++++|||+.+|++..++.+|-..|..+++++...++.+++ +|+.++.||+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g------edk~VKCwDLe 223 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG------EDKQVKCWDLE 223 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec------CCCeeEEEech
Confidence 668999999999999999999999999999999999999999999999999999999999998 99999999987
Q ss_pred CCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeec----------cccccc
Q 004298 140 PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIH----------KFHVAI 208 (763)
Q Consensus 140 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~----------~~~~~~ 208 (763)
.. +...+..||-+-+ .+...+|..++|++|+.|.++++|+.+.. .+....-| ...+..
T Consensus 224 ~n--kvIR~YhGHlS~V---------~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 224 YN--KVIRHYHGHLSGV---------YCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred hh--hhHHHhcccccee---------EEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 63 2222233333322 23446788899999999999999987753 23332222 223345
Q ss_pred ccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 209 PNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 209 ~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+++-|+++++|+ .++.++++.|....++.++.|.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN 341 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc
Confidence 6888999999998 3677888888766666655554
No 67
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.57 E-value=1.2e-13 Score=138.07 Aligned_cols=195 Identities=13% Similarity=0.057 Sum_probs=150.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-C--------------------------------------
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-P-------------------------------------- 60 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~-------------------------------------- 60 (763)
.+.|..+.|.++++.+++++.|.+|..|+. +|+++.+.+ |
T Consensus 90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred cceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 355999999999999999999999999999 776554432 1
Q ss_pred ----CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 61 ----GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 61 ----~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
.-++++++|..++..+.+|+-|+.|++||++.+...+.+++|.++|+.+..+++|.++.+-+ .|.++++|
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns------Md~tvrvw 243 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS------MDNTVRVW 243 (338)
T ss_pred ccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc------ccceEEEE
Confidence 11378999999999999999999999999999999999999999999999999999988887 89999999
Q ss_pred CCCCCCCCCC--CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCC
Q 004298 137 PPAPRIPQMP--GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQ 214 (763)
Q Consensus 137 d~~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~ 214 (763)
|.++..+.-. ..+.++. .....+.+.++++++...+..|+.|..+++|+.....+- +.+ |+
T Consensus 244 d~rp~~p~~R~v~if~g~~-----hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l-ykl---pG-------- 306 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHI-----HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL-YKL---PG-------- 306 (338)
T ss_pred EecccCCCCceEEEeecch-----hhhhhhcceeeccCCCCccccccccceEEEeecccccEE-EEc---CC--------
Confidence 9998543322 1111211 123344566677888889999999999999984432111 111 11
Q ss_pred CceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 215 GTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 215 ~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.++|..+.|+|.-..++.+.+|+
T Consensus 307 -----h~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 307 -----HYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred -----cceeEEEeeecCCCcEEEEeccCc
Confidence 125688999999988888777765
No 68
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9.5e-14 Score=139.33 Aligned_cols=191 Identities=17% Similarity=0.261 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
-.++.||+-|+++|+|..||.|.||++...++..+- |-.+|++++||+||++|.+++.|..|.+||+..|.+++.++-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 578999999999999999999999999655555443 778999999999999999999999999999999999999875
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC-CCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA-PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~-~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.++|+...|+|..+..+... ..+....+.+.. ++...++....++...+ .-...++..++++++|
T Consensus 106 -~spv~~~q~hp~k~n~~va~-----~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s--------as~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVAT-----IMEESPVVIDFSDPKHSVLPKDDDGDLNSS--------ASHGVFDRRGKYIITG 171 (405)
T ss_pred -cCccceeeeccccCCeEEEE-----EecCCcEEEEecCCceeeccCCCccccccc--------cccccccCCCCEEEEe
Confidence 78999999999764322221 011111221111 11111221111111111 0011356889999999
Q ss_pred cCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCcc
Q 004298 181 DKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 181 s~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
+..|.+.+++..++.+ +++.+.. -..|.++-++..|..+++-++|.++
T Consensus 172 tsKGkllv~~a~t~e~vas~rits-----------------~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITS-----------------VQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred cCcceEEEEecchheeeeeeeech-----------------heeeeEEEEeccCcEEEEecCCceE
Confidence 9999999999887743 2222211 0357789999999999999887733
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.56 E-value=3.7e-14 Score=138.08 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=150.2
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 11 PFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
++.++|..- |.+++|+.|.+.|.+|+.+..++||+++.. +...+. |.+.|..+-|....+.|.++..|++||+
T Consensus 94 lhsf~hkhi----vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 94 LHSFEHKHI----VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred hhhhhhhhe----eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 444555433 999999999999999999999999998532 223332 6778999999998899999999999999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
||..+|+.++++.. ..+|+++..+++|+++..+ ..+.++|||...- ..+...... .+.-+
T Consensus 170 WD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf-~~lKs~k~P-----------~nV~S 229 (334)
T KOG0278|consen 170 WDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSF-GLLKSYKMP-----------CNVES 229 (334)
T ss_pred EEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-------cCceeEEeccccc-cceeeccCc-----------ccccc
Confidence 99999999999864 7899999999999988776 4788999998751 111110000 00111
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccc
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
.+.+|+..++++|++|+.++.|+|..- .++.+ .+-.+++|+++.|||||...+.+++|+
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-----------------nkgh~gpVhcVrFSPdGE~yAsGSEDG--- 289 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-----------------NKGHFGPVHCVRFSPDGELYASGSEDG--- 289 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeec-----------------ccCCCCceEEEEECCCCceeeccCCCc---
Confidence 234566689999999999999986652 33332 133447899999999999888887776
Q ss_pred cccCCCCCCcEEEEEeec
Q 004298 247 EELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld~ 264 (763)
+|.++++..
T Consensus 290 ---------TirlWQt~~ 298 (334)
T KOG0278|consen 290 ---------TIRLWQTTP 298 (334)
T ss_pred ---------eEEEEEecC
Confidence 777777654
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.56 E-value=9.4e-14 Score=147.22 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=147.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE----E-Eec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL----W-TIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v----~-~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.++++.|.|-.+++|+.|-.|++|++.|--. + .+. .+..|+++.|+|.|..|.+.+.....+|+|- .|.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~ 246 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGF 246 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCc
Confidence 3599999999999999999999999999965421 1 122 3567999999999999999999999999994 454
Q ss_pred EEEE-------------ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCc
Q 004298 95 LLRS-------------LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 95 ~~~~-------------l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~ 160 (763)
.+.. -++|...++|-+|+|..+ .+.+++ .|+++|+|+.......+.-. . ......
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s------~DgtlRiWdv~~~k~q~qVi-k----~k~~~g 315 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS------YDGTLRIWDVNNTKSQLQVI-K----TKPAGG 315 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec------CCCcEEEEecCCchhheeEE-e----eccCCC
Confidence 3322 247889999999999874 567777 89999999987643221100 0 000111
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEEcCceeee-eeeeccc---------------ccccccCCCCCceeeec---
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIG-KINIHKF---------------HVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig-~~~i~~~---------------~~~~~s~~~~~~~~l~~--- 221 (763)
..+....+.++++++.+++|..||.|.+|+++..... .+.+.+. .....+.+.|.++++|+
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 2233355667889999999999999999997654221 1111111 11123667889999998
Q ss_pred --------------cceeeEEecCCCCEEEEEee
Q 004298 222 --------------ASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 222 --------------~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+-..++||||-+.++.+++
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 24567999999877776654
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=9e-15 Score=146.58 Aligned_cols=112 Identities=22% Similarity=0.331 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.|+.||.|...+|+|+.||.|+||++ +|+.+..+. |.+.|+|+.|+.|+..+.+++.|.+|+|..+.+|+++..+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 3999999999999999999999999999 899887775 8889999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++|.+-|+...|+++|..+++++ .|+++++|+..+
T Consensus 345 rGHsSyvn~a~ft~dG~~iisaS------sDgtvkvW~~Kt 379 (508)
T KOG0275|consen 345 RGHSSYVNEATFTDDGHHIISAS------SDGTVKVWHGKT 379 (508)
T ss_pred cCccccccceEEcCCCCeEEEec------CCccEEEecCcc
Confidence 99999999999999999999998 899999998654
No 72
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.54 E-value=7.1e-14 Score=146.79 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=153.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++.||||++||+|+.|..|.||+. +.+.+..+. |.+.|.+++|.-....+.+++.|++|++|+++....+.++
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 45999999999999999999999999999 677777755 7789999999999999999999999999999988888889
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
-+|++.|..|.-..-.+.+..|+ .|+++++|.+.....-+ +.++ ..+++++.+ -+..-+++
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGg------rDrT~rlwKi~eesqli---frg~-------~~sidcv~~---In~~Hfvs 343 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGG------RDRTVRLWKIPEESQLI---FRGG-------EGSIDCVAF---INDEHFVS 343 (479)
T ss_pred hCCccceeeechhcccceEEecc------ccceeEEEeccccceee---eeCC-------CCCeeeEEE---ecccceee
Confidence 99999999998887778777777 89999999984321111 1112 122233332 23356999
Q ss_pred EcCCCcEEEEEcCc-eeeeeeeeccc----------------------ccccccCCCCCceeeec---------------
Q 004298 180 GDKDGSICFNIFGI-FPIGKINIHKF----------------------HVAIPNADEQGTCRLLN--------------- 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~-~~ig~~~i~~~----------------------~~~~~s~~~~~~~~l~~--------------- 221 (763)
|+.||.|.+|.+-. .++...++... .--..+++.++.+|+|.
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence 99999999995432 22222222110 00123677889999996
Q ss_pred --cceeeEEecCCCCEEEEEeec
Q 004298 222 --ASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 222 --~~I~~v~~SpDg~~Llv~~~d 242 (763)
+-|.+++|+++|+.+++++..
T Consensus 424 ~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccEEEEEEEccCCCEEEEeccc
Confidence 468999999999988887653
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=149.58 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=155.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE---EEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL---WTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++|..+.|-++.+.||+|+.|..|.+|+..+.+. .++. ..+.|+++.|.++++.+++++.|+.+++|++.+.+..+
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~ 255 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH 255 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh
Confidence 5699999999999999999999999999977762 1221 34679999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
++.+|...|+++.|......+++|+ .|++++.||+......- +.+. ......+.. ....+
T Consensus 256 TLsGHtdkVt~ak~~~~~~~vVsgs------~DRtiK~WDl~k~~C~k-------t~l~---~S~cnDI~~----~~~~~ 315 (459)
T KOG0288|consen 256 TLSGHTDKVTAAKFKLSHSRVVSGS------ADRTIKLWDLQKAYCSK-------TVLP---GSQCNDIVC----SISDV 315 (459)
T ss_pred hhcccccceeeehhhccccceeecc------ccchhhhhhhhhhheec-------cccc---cccccceEe----cceee
Confidence 9999999999999987776688998 89999999998631110 0111 000111111 14568
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeeccc---------ccccccCCCCCceeeec------------------cceeeEEe
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKF---------HVAIPNADEQGTCRLLN------------------ASIYKVAL 229 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~---------~~~~~s~~~~~~~~l~~------------------~~I~~v~~ 229 (763)
++|..|++|++|+...- ..-.++.+.. -....+++.+..+.+.+ .-.+.+.|
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 88999999999985443 2222222221 11122334444444443 12567899
Q ss_pred cCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccc
Q 004298 230 SKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 230 SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
|||+.++++++.++ .+|++.+.+.-+.
T Consensus 396 Spd~~YvaAGS~dg------------sv~iW~v~tgKlE 422 (459)
T KOG0288|consen 396 SPDGSYVAAGSADG------------SVYIWSVFTGKLE 422 (459)
T ss_pred CCCCceeeeccCCC------------cEEEEEccCceEE
Confidence 99999999988776 7888877765443
No 74
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3e-13 Score=135.88 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=116.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c--------------------------------------eEEEec-
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q--------------------------------------RLWTIS- 59 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~--------------------------------------~v~~~~- 59 (763)
..+.|++++|+.+|+.||+++.|++|++|++.. . +++...
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 345699999999999999999999999999721 1 111110
Q ss_pred ---------------------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 60 ---------------------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 60 ---------------------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
|.-.|..+.....+++|++++.|.+|.||++. |+.+.++......-+..+.+|+|+++
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEE
Confidence 00125567777789999999999999999998 99999998877888889999999999
Q ss_pred eccCCCCCcccCCceeecCCCCC----CCCCC--CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPR----IPQMP--GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~----~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
++++ ...-+++|.+--. ..... ....||.+.+ ...+++++...+++.+.||++++|+.+
T Consensus 244 a~~g------FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 244 AVSG------FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------LAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEec------CCCCceEEEEEeccCcchhhhhhhheeccchhhe---------eeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9988 5667888864210 11100 0112333333 345577888899999999999999876
Q ss_pred c
Q 004298 193 I 193 (763)
Q Consensus 193 ~ 193 (763)
.
T Consensus 309 V 309 (420)
T KOG2096|consen 309 V 309 (420)
T ss_pred c
Confidence 5
No 75
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.3e-14 Score=159.22 Aligned_cols=186 Identities=18% Similarity=0.194 Sum_probs=146.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|.++.|++...+||.|+.+|+|++||+...+ +.++. |...+.++.|+|-|.+.|.|+.|+.+++||++...+.+.+.
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 39999999999999999999999999995444 34433 55678899999999999999999999999999888999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
+|...|.++.|+|+|+++++++ +|.++++||... .++...+.++.+-+ ....+++..-++++|
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~------ed~tvki~d~~a--gk~~~ef~~~e~~v---------~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGG------EDNTVKIWDLTA--GKLSKEFKSHEGKV---------QSLEFHPLEVLLAPG 214 (825)
T ss_pred CCcceeEEEeecCCCceeeccC------Ccceeeeecccc--cccccccccccccc---------cccccCchhhhhccC
Confidence 9999999999999999999998 799999999864 22222233333322 223356666789999
Q ss_pred cCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 181 DKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 181 s~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.|+++++|+...|.+ ++.... -..|.+.+|+|||+.++.+.+..
T Consensus 215 s~d~tv~f~dletfe~I~s~~~~------------------~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVISSGKPE------------------TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCCceeeeeccceeEEeeccCCc------------------cCCceeeeecCCceeeecCchhh
Confidence 9999999999887643 332100 12477899999999888765543
No 76
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.53 E-value=1.2e-13 Score=139.90 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=123.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...|.|+.+. ...+++|..|++|+||+.+.- .+..+. |.+.|.|+.| |.+.|++|++|.+|++||+++|+++.+
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 3458888885 567899999999999998543 333332 7788988887 567999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-----CCCCcccCCcc-------cccCC-cc----
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-----QMPGLVSGDTG-------FTDDS-ED---- 161 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-----~l~~~~s~~~~-------~~~~~-~~---- 161 (763)
+-.|...|..+.|+. .++++++ .|+++.+||+..+.. .+.++.+.... .+..+ +-
T Consensus 273 lihHceaVLhlrf~n--g~mvtcS------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 344 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEec------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEE
Confidence 989999999998874 4667776 777777777654210 11111111000 00000 00
Q ss_pred ------c-ccce------ecccCCCeeEEEEEcCCCcEEEEEcCceee-----------eeeeecccccccccCCCCCce
Q 004298 162 ------S-FREL------ANSSHQRFSILCSGDKDGSICFNIFGIFPI-----------GKINIHKFHVAIPNADEQGTC 217 (763)
Q Consensus 162 ------~-~~~~------~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-----------g~~~i~~~~~~~~s~~~~~~~ 217 (763)
. +..+ -.+..-++.++++|++|.+|++|+...-.+ ..+... ...+.+++.||.+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred EeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 0 0000 011234678999999999999998543211 111111 1234588899999
Q ss_pred eeec
Q 004298 218 RLLN 221 (763)
Q Consensus 218 ~l~~ 221 (763)
++|+
T Consensus 423 kvWd 426 (499)
T KOG0281|consen 423 KVWD 426 (499)
T ss_pred EEEe
Confidence 9998
No 77
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.53 E-value=2.9e-13 Score=144.08 Aligned_cols=197 Identities=16% Similarity=0.243 Sum_probs=146.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec---CCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS---PGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~---~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~ 94 (763)
.++-..+||.|-++|+|...|+|+||+... ..+.+-. -.++|..|.|++|++.|++.++. |.+.+|| +|.
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~ 138 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGN 138 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCC
Confidence 489999999999999999999999999954 4443322 34689999999999998877643 3455565 678
Q ss_pred EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+..+.+|...|.++.|-|.-. .+++|+ +|+++.||+-.|- +.......|..|+ -+..++|+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~s------dDn~v~ffeGPPF--KFk~s~r~HskFV---------~~VRysPD 201 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGS------DDNTVAFFEGPPF--KFKSSFREHSKFV---------NCVRYSPD 201 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEecc------CCCeEEEeeCCCe--eeeecccccccce---------eeEEECCC
Confidence 8888999999999999998765 578888 8999999986652 2233344566666 23346788
Q ss_pred eeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCC
Q 004298 174 FSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGH 252 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~ 252 (763)
+..+++.+.||+|.+|+-.. -.+|.+.- . .-+.++|..++||||+++++.++.|.
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~-----------~----~aHkGsIfalsWsPDs~~~~T~SaDk--------- 257 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELED-----------S----DAHKGSIFALSWSPDSTQFLTVSADK--------- 257 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecC-----------C----CCccccEEEEEECCCCceEEEecCCc---------
Confidence 99999999999999997222 12333310 0 12336799999999999999998876
Q ss_pred CCCcEEEEEeecc
Q 004298 253 GMHGLHCLVLDTS 265 (763)
Q Consensus 253 ~~~~l~~~~ld~~ 265 (763)
.++++.+.++
T Consensus 258 ---t~KIWdVs~~ 267 (603)
T KOG0318|consen 258 ---TIKIWDVSTN 267 (603)
T ss_pred ---eEEEEEeecc
Confidence 5666665554
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=7.9e-14 Score=147.46 Aligned_cols=204 Identities=19% Similarity=0.231 Sum_probs=145.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|||...+=...+..-.|.+|..... .+.++. -.+.|.+++|+.||++||+|...|.|+|+|..+..+++.+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 45999999997744333334566888887333 333233 4567999999999999999999999999997776788899
Q ss_pred cccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
.+|+.+|..+.|+|++ ..+++|+ +|+.+++||..+..- ....++|+..+ .+..+. +.+..+++
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s~a~v--~~~l~~htDYV-------R~g~~~-~~~~hivv 170 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLSTAYV--QAELSGHTDYV-------RCGDIS-PANDHIVV 170 (487)
T ss_pred hhccCceeEEEecccCCeEEEecC------CCceEEEEEcCCcEE--EEEecCCccee-------Eeeccc-cCCCeEEE
Confidence 9999999999999976 5667787 899999999887431 11233444433 333332 34557999
Q ss_pred EEcCCCcEEEEEcCcee--eeeeeeccccc---------c-cccCCCCCceeeec---------------cceeeEEecC
Q 004298 179 SGDKDGSICFNIFGIFP--IGKINIHKFHV---------A-IPNADEQGTCRLLN---------------ASIYKVALSK 231 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~--ig~~~i~~~~~---------~-~~s~~~~~~~~l~~---------------~~I~~v~~Sp 231 (763)
+|+.||+|++|+..+.. +-+++ |..+. . +.++ .-..+++|| ..|+|+.+..
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999999999977652 22221 11111 1 1122 235678887 4799999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
|++.|+.++-|+
T Consensus 249 ~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 249 DSTRLLSGSLDR 260 (487)
T ss_pred CCceEeeccccc
Confidence 999999988776
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.52 E-value=3.2e-13 Score=140.73 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC---CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG---KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~---~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
.+|+.+..+|+|++|.++++|++....++ .|..+-...+. -.+++.+|+|||-.|++|..||.|+|||+.++..+.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc
Confidence 34999999999999999999999999998 56555555543 358999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.|.+|.++|+.|.|+.||.+++++. +|+.+++||++.-. ..+. ..- .........++++.+.+|
T Consensus 384 ~Fpght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~-n~kt-~~l--------~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLK-NFKT-IQL--------DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred cCCCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhc-ccce-eec--------cccccceeEEEcCCCCeE
Confidence 9999999999999999999999998 88999999998621 1111 000 011111234567888899
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
+.++.|=+|+++.
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9997665555443
No 80
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.5e-14 Score=156.25 Aligned_cols=203 Identities=14% Similarity=0.145 Sum_probs=153.1
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEccC---ceE-EEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 24 IKIAEWNP-EKDLLAMATEDSKILLHRFNW---QRL-WTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~---~~v-~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+..++|+. ..++||+++..|.|.+|+++. ++. ..+. |...|++++|++ ...+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 55688984 348999999999999999964 332 2333 888999999999 5678999999999999999998888
Q ss_pred EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.++.+....|..+.|+|.. ..++++. +.|.+..||++.+.... .....|.+++ ++..++|+..
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~------dsG~lqlWDlRqp~r~~-~k~~AH~GpV---------~c~nwhPnr~ 233 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIH------DSGYLQLWDLRQPDRCE-KKLTAHNGPV---------LCLNWHPNRE 233 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEec------CCceEEEeeccCchhHH-HHhhcccCce---------EEEeecCCCc
Confidence 8888878899999999854 4666765 89999999999752221 1234677776 5666788999
Q ss_pred EEEEEcCCCcEEEEEcCce---eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCC
Q 004298 176 ILCSGDKDGSICFNIFGIF---PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGH 252 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~---~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~ 252 (763)
+||+|+.|+.|+||+.+.- +..+++.. +++.++.|-|+.++.+..|+-.
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------------------apv~rVkWRP~~~~hLAtcsmv--------- 285 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTINTI-------------------APVGRVKWRPARSYHLATCSMV--------- 285 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEeec-------------------ceeeeeeeccCccchhhhhhcc---------
Confidence 9999999999999987642 33333210 3577888998888777766521
Q ss_pred CCCcEEEEEeeccccccC
Q 004298 253 GMHGLHCLVLDTSIFSKR 270 (763)
Q Consensus 253 ~~~~l~~~~ld~~~l~~~ 270 (763)
....++++.+.-++|+..
T Consensus 286 ~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred ccceEEEEeeccccccce
Confidence 123677777777766543
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.3e-13 Score=134.90 Aligned_cols=154 Identities=20% Similarity=0.281 Sum_probs=121.8
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC-CeEEE
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN-GKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~-g~~~~ 97 (763)
+|.++.|++.. +.+++++.|++|++|+.+ .+-+.++. |..+|....|+| .+..+++++.||+.++||++. |+.+.
T Consensus 106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 49999999965 667788999999999994 45566665 778999999999 888999999999999999985 55555
Q ss_pred EecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+..|...|.|+.|+.-. ..+++|+ .|+.++.||++....++... .+| +..+..+.++++. .++
T Consensus 186 -i~ah~~Eil~cdw~ky~~~vl~Tg~------vd~~vr~wDir~~r~pl~eL-~gh-------~~AVRkvk~Sph~-~~l 249 (311)
T KOG0277|consen 186 -IEAHNSEILCCDWSKYNHNVLATGG------VDNLVRGWDIRNLRTPLFEL-NGH-------GLAVRKVKFSPHH-ASL 249 (311)
T ss_pred -EEeccceeEeecccccCCcEEEecC------CCceEEEEehhhccccceee-cCC-------ceEEEEEecCcch-hhH
Confidence 88999999999999755 5677887 89999999998643332211 222 3345556665543 479
Q ss_pred EEEEcCCCcEEEEEcC
Q 004298 177 LCSGDKDGSICFNIFG 192 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~ 192 (763)
|++++.|=++++|++.
T Consensus 250 LaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPE 265 (311)
T ss_pred hhhccccceEEecccc
Confidence 9999999999999855
No 82
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=142.72 Aligned_cols=206 Identities=17% Similarity=0.118 Sum_probs=141.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc-----
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE----- 91 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----- 91 (763)
-+|+.|.+++-+|.|.+++.|+..|.|++|.++ |..+..+. |-..|+|+.|+-||.+|++|+.||.|.+|++.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 356789999999999999999999999999994 44443333 77899999999999999999999999999864
Q ss_pred ----CCeEEEEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 92 ----NGKLLRSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 92 ----~g~~~~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
+-+.++.+..|.-+|+.+...+-| ..+++.| .|+++++||+... .+.....-. ..+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS------~D~t~k~wdlS~g--~LLlti~fp--------~si~- 221 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS------EDRTIKLWDLSLG--VLLLTITFP--------SSIK- 221 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEec------CCceEEEEEeccc--eeeEEEecC--------Ccce-
Confidence 346788999999999999887643 5677887 8999999998652 111100000 0111
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeec--cceeeEEecCCCCEEEEEeecC
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLN--ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~--~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+...++....+.+|+++|+|.+..+-..+--+-.+.....+. .......+.-.. .+|++++.|-||+.|+.+..|+
T Consensus 222 -av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~-~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 222 -AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE-ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred -eEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc-ccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 123456677899999999998776443331111111000000 000000011111 3799999999999998887765
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=1.8e-13 Score=150.92 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=130.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+++.|.|+++||||.+||++--|.+|+||-++.-+.+-- -|.-+|.|+..+||++.+++|+.|..|++|.+.-|.|-
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence 3456799999999999999999999999999966544332 37789999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC--CCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP--RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~--~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+++-+|++.|.++.|.|....+.+++ .|+.++.||-.. .+..+++|.....+ .+..++|
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~g------KD~kvKqWDg~kFe~iq~L~~H~~ev~c-------------Lav~~~G 646 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCG------KDGKVKQWDGEKFEEIQKLDGHHSEVWC-------------LAVSPNG 646 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEec------CcceEEeechhhhhhheeeccchheeee-------------eEEcCCC
Confidence 99999999999999999998888888 999999998764 34555554433222 2245888
Q ss_pred eEEEEEcCCCcEEEEEc
Q 004298 175 SILCSGDKDGSICFNIF 191 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~ 191 (763)
.++++++.|.+|++|.-
T Consensus 647 ~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWER 663 (888)
T ss_pred CeEEeccCCceeEeeec
Confidence 99999999999999953
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.3e-12 Score=121.26 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=139.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce------EEEec-CCCcEEEEEEccC----CCEEEEEE-cCCc
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR------LWTIS-PGKSVTSLCWRPD----GKAIAVGL-EDGT 84 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~------v~~~~-~~~~V~~l~wspD----G~~Lasg~-~Dg~ 84 (763)
.|+.-+.|.|.+|||.|.++|+|++|.+|++.++|... -..++ |.+.|..++|-.| |..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 34445669999999999999999999999998884321 11222 7788999999643 55777776 6788
Q ss_pred EEEEEccCCeEEEEecccCCceeEE-EeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCL-NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l-~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~ 163 (763)
|++-|-.+|+..+.+.+|.+.|.++ .|+ +-.+++|+ .|+++||||++-+...-. -.+.+-+..-.+.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgs------qdktirfwdlrv~~~v~~----l~~~~~~~gless 232 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGS------QDKTIRFWDLRVNSCVNT----LDNDFHDGGLESS 232 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccC------CCceEEEEeeeccceeee----ccCcccCCCcccc
Confidence 8888888999999999999999877 454 77899998 899999999885421100 0111111111111
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.....+.+|.+.+|++|..|....+|+++.- .+.++..| .+.|.++.|||...+|+.++.|
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph------------------sadir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH------------------SADIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC------------------ccceeEEEeCCCceEEEEeccc
Confidence 1233456788999999999999999985432 33333211 1357899999998888887766
Q ss_pred C
Q 004298 243 Q 243 (763)
Q Consensus 243 ~ 243 (763)
.
T Consensus 295 ~ 295 (350)
T KOG0641|consen 295 M 295 (350)
T ss_pred c
Confidence 4
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.47 E-value=1.9e-12 Score=134.97 Aligned_cols=183 Identities=17% Similarity=0.240 Sum_probs=142.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW--QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|..+.++|+.+.+++++.|..|+||...- .+.....|..+|+.+..+|.|.||.+++.||+....|+++|..+....
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS 342 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe
Confidence 499999999999999999999999999832 233344588999999999999999999999999999999999887664
Q ss_pred c--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 101 S--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 101 ~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
. ..-.+++..|+|||..+.+|. .|+.+++||...+ ..+.+ +|++.+ .. ..++.+|-+
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt------~d~~vkiwdlks~~~~a~Fp----ght~~v-------k~--i~FsENGY~ 403 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGT------PDGVVKIWDLKSQTNVAKFP----GHTGPV-------KA--ISFSENGYW 403 (506)
T ss_pred eccccceeEEeeEcCCceEEeccC------CCceEEEEEcCCccccccCC----CCCCce-------eE--EEeccCceE
Confidence 3 234689999999999999998 8999999998764 22333 343333 22 346688999
Q ss_pred EEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 177 LCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
|+++..||.|++|+.+... .-++.+.. ...+.+++|...|++|.+.++
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~~l~~-----------------~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTIQLDE-----------------KKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred EEEEecCCeEEEEEehhhcccceeeccc-----------------cccceeEEEcCCCCeEEeecc
Confidence 9999999999999977543 11221111 024678999999999988744
No 86
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=3.3e-13 Score=149.47 Aligned_cols=161 Identities=13% Similarity=0.197 Sum_probs=122.9
Q ss_pred ecCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCce--EEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEc
Q 004298 15 QFDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQR--LWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~--v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdv 90 (763)
+|++. |+++.|++.. .+|++|+.||.|++|++...+ .-.....+.|+.+.|+| .+..|+++.+.|.+.+||+
T Consensus 131 EH~Rs----~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 131 EHERS----ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred hhccc----eeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeec
Confidence 46666 9999999976 788899999999999993322 22223557899999999 8889999999999999999
Q ss_pred cC-CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 91 EN-GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 91 e~-g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+. .++..++..|.++|.|+.|+|++.++|+|+ .|+.+++|+.............. ...+.++.|-
T Consensus 207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG------RDK~vkiWd~t~~~~~~~~tInT--------iapv~rVkWR 272 (839)
T KOG0269|consen 207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG------RDKMVKIWDMTDSRAKPKHTINT--------IAPVGRVKWR 272 (839)
T ss_pred cCchhHHHHhhcccCceEEEeecCCCceeeecC------CCccEEEEeccCCCccceeEEee--------cceeeeeeec
Confidence 84 456778899999999999999999999999 99999999988532221111111 1233455555
Q ss_pred cCCCeeEEEEEc--CCCcEEEEEcCce
Q 004298 170 SHQRFSILCSGD--KDGSICFNIFGIF 194 (763)
Q Consensus 170 ~~~~~~~L~sgs--~DG~I~lw~~~~~ 194 (763)
+... ..|++++ .|-.|++|+....
T Consensus 273 P~~~-~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 273 PARS-YHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred cCcc-chhhhhhccccceEEEEeeccc
Confidence 5333 5677776 6889999987653
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=1e-12 Score=131.80 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=167.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE------ccC-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD------VEN- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd------ve~- 92 (763)
++|+.++-......+++++.|.+-.||.+ .|..+.++. |.+.|++|+|+|.|.++++++.|++-.||. +..
T Consensus 149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~ 228 (481)
T KOG0300|consen 149 DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN 228 (481)
T ss_pred cceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence 46999998888889999999999999999 788888876 889999999999999999999999999994 110
Q ss_pred -----------------------------C----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 93 -----------------------------G----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 93 -----------------------------g----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
| -++..+++|.+.|.+..|-..|+.+++++ +|++..+||..
T Consensus 229 ~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS------WDRTAnlwDVE 302 (481)
T KOG0300|consen 229 NAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS------WDRTANLWDVE 302 (481)
T ss_pred CCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee------ccccceeeeec
Confidence 1 12345778999999999999999999998 99999999998
Q ss_pred CC--CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccc------------
Q 004298 140 PR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFH------------ 205 (763)
Q Consensus 140 ~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~------------ 205 (763)
+. ...+. ||..-. ..++.++...++++.+.|.+.++|+|. ..|..+.+.+..
T Consensus 303 tge~v~~Lt----GHd~EL---------tHcstHptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 303 TGEVVNILT----GHDSEL---------THCSTHPTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred cCceecccc----Ccchhc---------cccccCCcceEEEEeccCceeEeccch-hhcceeeeecccccceeEEEEecC
Confidence 74 22333 332211 123456888999999999999999987 334444433321
Q ss_pred cccccCCCCCceeeec-----cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccccCc
Q 004298 206 VAIPNADEQGTCRLLN-----ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFSKRK 271 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~-----~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~~~ 271 (763)
....+++.|.++++|+ .++-.+..+.--+.+.+...+.++. .+.++..+.++.|+..-+.+-+
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA---iPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA---IPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEE---eccCCceEEEEecCCCccccCC
Confidence 1234788899999998 3444455554455555554443332 3556678888888877666554
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.47 E-value=5.1e-12 Score=124.27 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|..++|+|.. +++|+++.|.+|++|+. .++++..+.....-.-+.|+|+|+++++|..|..|...|.++.+..+..
T Consensus 65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh
Confidence 458889999855 89999999999999999 7888888876665567999999999999999999999999998888776
Q ss_pred cccCCceeEEEeecCCC-ceeccCCCCCcccCCceee--cCCCCCCCCCCCcccCCcc---------cccCCccc-----
Q 004298 100 KSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRF--FPPAPRIPQMPGLVSGDTG---------FTDDSEDS----- 162 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~--wd~~~~~~~l~~~~s~~~~---------~~~~~~~~----- 162 (763)
+. .-.+.-+.|+-++. ++.+.+ .|.+.+ |+.+.+...+..|.+.-.+ |..++.+.
T Consensus 145 ~~-~~e~ne~~w~~~nd~Fflt~G-------lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 145 QF-KFEVNEISWNNSNDLFFLTNG-------LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred cc-cceeeeeeecCCCCEEEEecC-------CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 43 45667777875554 444443 677776 4444444444444321110 11111110
Q ss_pred ----------ccc-----eecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceee
Q 004298 163 ----------FRE-----LANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYK 226 (763)
Q Consensus 163 ----------~~~-----~~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~ 226 (763)
+.+ -..+++.++.+|++|++|-.|-|-.... -.+..++ ..++-..
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-------------------~~~~t~t 277 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-------------------CEGPTFT 277 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-------------------ccCCcee
Confidence 111 1134567888999999998876653221 0111111 1245678
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
++|.|....|+.++.++
T Consensus 278 VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 278 VAWHPKRPLLAYACDDK 294 (313)
T ss_pred EEecCCCceeeEEecCC
Confidence 99999988888888876
No 89
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.46 E-value=1.7e-12 Score=133.41 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=140.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC------c--------------------eEEEec-CCCcEEEEEEccCCCE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW------Q--------------------RLWTIS-PGKSVTSLCWRPDGKA 75 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~------~--------------------~v~~~~-~~~~V~~l~wspDG~~ 75 (763)
.|.+++..+++..+++|+.|..|.||+... + ++-.+. |..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 499999999999999999999999999311 0 122222 667899999998 668
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCC-cccCCcc
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-LVSGDTG 154 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-~~s~~~~ 154 (763)
+.+++.|.+|+.||+++|..+.++.+ ...+.|+..+|...++++|+ .|+.+++||++.+-..+.. ...+|..
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs------sdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS------SDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC------CCCceeecCCCCCCCceeEEeeecchh
Confidence 99999999999999999999988876 67899999999999999998 8999999999986444332 3456666
Q ss_pred cccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCC
Q 004298 155 FTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLF 234 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~ 234 (763)
++ ..+.|++. +-..|++|+.||++++|+.++..-.-++++. ++..|.++.|+. +.
T Consensus 347 wV-------ssvkwsp~-~~~~~~S~S~D~t~klWDvRS~k~plydI~~----------------h~DKvl~vdW~~-~~ 401 (423)
T KOG0313|consen 347 WV-------SSVKWSPT-NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG----------------HNDKVLSVDWNE-GG 401 (423)
T ss_pred hh-------hheecCCC-CceEEEEEecCCeEEEEEeccCCCcceeecc----------------CCceEEEEeccC-Cc
Confidence 65 23445443 3468999999999999998764322232221 123467777765 34
Q ss_pred EEEEEeecC
Q 004298 235 HLTVLCSGQ 243 (763)
Q Consensus 235 ~Llv~~~d~ 243 (763)
.++.++.|.
T Consensus 402 ~IvSGGaD~ 410 (423)
T KOG0313|consen 402 LIVSGGADN 410 (423)
T ss_pred eEEeccCcc
Confidence 555554443
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=7.1e-13 Score=148.94 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=101.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|..+.||. .++|.+++.|.+|++|++ ..+.+..+.|..-|+|++|+| |.+||++|+-||.|+||++...+++.-
T Consensus 369 t~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 369 TADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred chhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 35699999995 567789999999999999 667889999999999999999 999999999999999999998888877
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
...+ .-|+++++.|+|+..+.|+ .+|.++||++..
T Consensus 448 ~Dl~-~lITAvcy~PdGk~avIGt------~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 448 NDLR-DLITAVCYSPDGKGAVIGT------FNGYCRFYDTEG 482 (712)
T ss_pred hhhh-hhheeEEeccCCceEEEEE------eccEEEEEEccC
Confidence 7664 7899999999999999998 899999998765
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.45 E-value=2.1e-12 Score=135.89 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---EEEe----------------cCCCcEEEEEEccCCCEEEEEEcCC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---LWTI----------------SPGKSVTSLCWRPDGKAIAVGLEDG 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---v~~~----------------~~~~~V~~l~wspDG~~Lasg~~Dg 83 (763)
|.+++.+|+..+..+++.+++|.-|+. .|.. +|.- .|.+.+.+++.+|||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 999999999999999999999999998 5542 2322 1345689999999999999999999
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcc
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~ 161 (763)
.|.||+.++.+.++.+++|.+.|.+++|-.....+.+++ .|+++++|+.... ...+.+|.++..+
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s------~Drsvkvw~~~~~s~vetlyGHqd~v~~------- 291 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS------ADRSVKVWSIDQLSYVETLYGHQDGVLG------- 291 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeee------cCCceEEEehhHhHHHHHHhCCccceee-------
Confidence 999999999999999999999999999988777777877 8999999988752 3334433332222
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEEcCc-----ee--eeeeeecc--cccccccCCCCCceeeec
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNIFGI-----FP--IGKINIHK--FHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-----~~--ig~~~i~~--~~~~~~s~~~~~~~~l~~ 221 (763)
...-.....+.+|+.|+++++|.... |. .+.++.-. ...++.+++.+|.+-||.
T Consensus 292 ------IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 292 ------IDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred ------echhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 12234567788888999999996422 11 11111111 124667899999999997
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.44 E-value=2.2e-12 Score=135.79 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=149.4
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCce---------EEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEcc-
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQR---------LWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVE- 91 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~---------v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve- 91 (763)
-..++|++.. -.+++++.|++|.+|+++... .+.-.|...|..++|+| +...|++.++|+.+.|||++
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 5669999966 567889999999999994321 12223778899999999 67789999999999999999
Q ss_pred -CCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 92 -NGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 92 -~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+.+..+...+|.+.|.|++|+|-+ ..+|+|| .|+++.+||.+.-..++. ...+|. ..+-.+.|+
T Consensus 260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------~D~tV~LwDlRnL~~~lh-~~e~H~-------dev~~V~WS 325 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------ADKTVALWDLRNLNKPLH-TFEGHE-------DEVFQVEWS 325 (422)
T ss_pred CCCCCcccccccCCceeEEEeCCCCCceEEecc------CCCcEEEeechhcccCce-eccCCC-------cceEEEEeC
Confidence 567777888999999999999966 5678888 899999999997433222 223332 333345665
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeee---ccceeeEEecCCCCEEEEEeecCccc
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLL---NASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~---~~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
++.. .+|++++.||.+.+|++.. +|..... .....+....+.++ .+.|...+|.|+-...++...++
T Consensus 326 Ph~e-tvLASSg~D~rl~vWDls~--ig~eq~~----eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD--- 395 (422)
T KOG0264|consen 326 PHNE-TVLASSGTDRRLNVWDLSR--IGEEQSP----EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED--- 395 (422)
T ss_pred CCCC-ceeEecccCCcEEEEeccc--cccccCh----hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC---
Confidence 5433 6999999999999998654 3332110 01111122222222 24688999999988888776543
Q ss_pred cccCCCCCCcEEEEEeecccc
Q 004298 247 EELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld~~~l 267 (763)
..++++.+.-++.
T Consensus 396 --------N~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 396 --------NILQIWQMAENIY 408 (422)
T ss_pred --------ceEEEeecccccc
Confidence 3677777765544
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.44 E-value=8.5e-13 Score=139.42 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=146.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEE-e-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWT-I-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~-~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+-|.++...|||+-|++|+.-.++.||++. .-+|.. + ..+....+++.+||.+..++++.||.|.|||+.+...++
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 458899999999999999999999999992 222221 1 133467889999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+++|.+.+.||..+++|..+-+|+ -|.++|.||.+........ ++..+-++...+++++.+
T Consensus 546 qfqGhtDGascIdis~dGtklWTGG------lDntvRcWDlregrqlqqh------------dF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGG------LDNTVRCWDLREGRQLQQH------------DFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCC------Cccceeehhhhhhhhhhhh------------hhhhhheecccCCCccce
Confidence 9999999999999999999999998 8999999999864322111 111222445567889999
Q ss_pred EEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCcc
Q 004298 178 CSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
++|..++.+.+--.... .++ .+.++...|.++.|++-|+.++..+.|.++
T Consensus 608 avGMens~vevlh~skp--~ky----------------qlhlheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP--EKY----------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred eeecccCcEEEEecCCc--cce----------------eecccccEEEEEEecccCceeeecCchhhh
Confidence 99999999876532211 111 223344568899999999999998888765
No 94
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.44 E-value=7.4e-13 Score=134.23 Aligned_cols=147 Identities=17% Similarity=0.282 Sum_probs=111.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce-------------------------------EEEec----------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR-------------------------------LWTIS---------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~-------------------------------v~~~~---------- 59 (763)
+.|.|+.|+. .++++|+.|.+|+||+. +|+. +|...
T Consensus 238 GSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 238 GSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred CcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 4599999874 48999999999999999 5542 33322
Q ss_pred ---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 60 ---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 60 ---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
|-..|+.+.| |.++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+ .|.+|++|
T Consensus 316 LvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS------SDntIRlw 385 (499)
T KOG0281|consen 316 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS------SDNTIRLW 385 (499)
T ss_pred Hhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC------CCceEEEE
Confidence 1123667766 56799999999999999999999999999999999998764 78999998 89999999
Q ss_pred CCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 137 PPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 137 d~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
|.... .+.....||...+ .++.+ +.+.+++|..||+|++|++..
T Consensus 386 di~~G--~cLRvLeGHEeLv-------RciRF----d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 386 DIECG--ACLRVLEGHEELV-------RCIRF----DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ecccc--HHHHHHhchHHhh-------hheee----cCceeeeccccceEEEEeccc
Confidence 98763 1112223443332 22222 235799999999999998554
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.44 E-value=5e-12 Score=127.32 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEe-cCCCcEEEEEEccCCC--EEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTI-SPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~-~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+.+++++.+ +.++|+|+.|.+|.||++.. ..+-.+ .|.+.|+++.|.|+-. .|.+|++||.|.+|++...+++
T Consensus 43 ~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 43 AGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 3459999986 89999999999999999943 233333 4889999999999775 8999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+++++|.+.|+.++.+|.+++..+.+ .|+.++.|++..
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg------~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVG------GDQVLRTWNLVR 158 (362)
T ss_pred eeecccccccceeEecCCCceEEEEc------CCceeeeehhhc
Confidence 99999999999999999999877776 799999998754
No 96
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=1.6e-12 Score=134.26 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=116.8
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc--------eEEEec-CCCcEEEEEEccC-CCEEEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ--------RLWTIS-PGKSVTSLCWRPD-GKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~--------~v~~~~-~~~~V~~l~wspD-G~~Lasg~~Dg~V~lwdv 90 (763)
+.|..++|||-. +.||+|++|.+|.||.+..+ .+..+. |..+|--+.|+|. .+.|++++.|++|.||++
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 349999999955 67999999999999998332 222222 7788999999995 468999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.+|+.+-++. |...|.+++|+.+|..+++.+ .|+.+|+||.+... +.....+|.+.. . ....+
T Consensus 162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~--~v~e~~~heG~k-----~---~Raif 224 (472)
T KOG0303|consen 162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGT--VVSEGVAHEGAK-----P---ARAIF 224 (472)
T ss_pred cCCceeeecC-CCCeEEEEEeccCCceeeeec------ccceeEEEcCCCCc--EeeecccccCCC-----c---ceeEE
Confidence 9999998887 999999999999999999988 99999999998631 111112333322 0 11112
Q ss_pred CCCeeEEEEEc---CCCcEEEEEcCc
Q 004298 171 HQRFSILCSGD---KDGSICFNIFGI 193 (763)
Q Consensus 171 ~~~~~~L~sgs---~DG~I~lw~~~~ 193 (763)
-.+++++.+|. ++..+.+|+-..
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eccCceeeeccccccccceeccCccc
Confidence 24555666665 677888997443
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=7.6e-13 Score=144.06 Aligned_cols=210 Identities=15% Similarity=0.181 Sum_probs=151.0
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEccC--c----e-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e
Q 004298 26 IAEWN-PEKDLLAMATEDSKILLHRFNW--Q----R-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K 94 (763)
Q Consensus 26 ~l~~s-P~~~lLA~~s~Dg~V~v~~l~~--~----~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~ 94 (763)
.+.-+ |.+++|.+|+.||.|++|..+. + + +.++. |...|+.+....+|+.|++++.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 4567799999999999999832 1 1 22332 7788999999999999999999999999999876 6
Q ss_pred EEEEecccCCceeEEEe-ecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc--ccccCCcccccceecccC
Q 004298 95 LLRSLKSHTVAVVCLNW-EEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT--GFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~w-s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~--~~~~~~~~~~~~~~~~~~ 171 (763)
++.+++.|...|.|++. .++...+++|+ -|+.|.+||+......+.......+ ....+...++ .+.+.+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgG------LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si--YSLA~N 180 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGG------LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI--YSLAMN 180 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecC------CCccEEEEEccCcchhhhhhccccccccCCCCCccce--eeeecC
Confidence 77889999999999999 78888999998 8999999998854322222211111 1111111222 334456
Q ss_pred CCeeEEEEEcCCCcEEEEEcCce-eeeeeee----------cccccccccCCCCCceeeec--------------cceee
Q 004298 172 QRFSILCSGDKDGSICFNIFGIF-PIGKINI----------HKFHVAIPNADEQGTCRLLN--------------ASIYK 226 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i----------~~~~~~~~s~~~~~~~~l~~--------------~~I~~ 226 (763)
+.+.++++|+..+.+++|+...- .+-++.. .+-.....+++.|+++++|+ ..|.+
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 77789999999999999975542 2222221 12223345888999999998 34778
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
+..+|+.++++.+..++
T Consensus 261 L~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDG 277 (735)
T ss_pred EeeCCCcceEEecCCCC
Confidence 88889999999887766
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.43 E-value=1.6e-12 Score=136.82 Aligned_cols=162 Identities=16% Similarity=0.262 Sum_probs=119.0
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc--CceEEEe--cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC-Ce
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN--WQRLWTI--SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN-GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~--~~~v~~~--~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~-g~ 94 (763)
+.|..++|+|. .++++++++|+.+.||++. ..+.... .|...|+|++|+| ++..||+|+.|++|+|||+++ .+
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 34999999995 5899999999999999994 2222221 2788999999999 778999999999999999987 56
Q ss_pred EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcc--cc-cCCcccccceec
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTG--FT-DDSEDSFRELAN 168 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~--~~-~~~~~~~~~~~~ 168 (763)
.++++.+|...|.++.|+|... .+++++ .|+.+.+||+..--.... ....+... |+ .+....+..+.|
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSG------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecc------cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 8899999999999999999875 566666 899999999865211110 00000000 11 112234455666
Q ss_pred ccCCCeeEEEEEcCCCcEEEEE
Q 004298 169 SSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
.++.. -++++.+.|+.++||.
T Consensus 382 np~eP-W~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 382 NPNEP-WTIASVAEDNILQIWQ 402 (422)
T ss_pred CCCCC-eEEEEecCCceEEEee
Confidence 55433 4889999999999996
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.43 E-value=3.5e-12 Score=127.79 Aligned_cols=156 Identities=16% Similarity=0.257 Sum_probs=121.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEE-ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWT-ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~-~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++|.++.|+|....|++++.|++|++|++... +-++ +.....|.+|.|+|.|.+|++|..-.++++||+++-++..
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 45999999999999999999999999998332 2222 2345689999999999999999999999999999988765
Q ss_pred Ee---cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCcccccceecccCC
Q 004298 98 SL---KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 98 ~l---~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
.- ..|.+.|+++.+++.++..++++ .||.|++||-.... .... ..|.+ ..+ .+..+..
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaS------kDG~IklwDGVS~rCv~t~~---~AH~g------sev--cSa~Ftk 315 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTAS------KDGAIKLWDGVSNRCVRTIG---NAHGG------SEV--CSAVFTK 315 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEec------cCCcEEeeccccHHHHHHHH---hhcCC------cee--eeEEEcc
Confidence 53 36889999999999999999999 99999999965421 1111 11111 111 1223557
Q ss_pred CeeEEEEEcCCCcEEEEEcCce
Q 004298 173 RFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+++++++.+.|..+++|.++.-
T Consensus 316 n~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CCeEEeecCCcceeeeeeecCC
Confidence 8899999999999999976543
No 100
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.42 E-value=1.4e-12 Score=134.02 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=122.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e-EEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K-LLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~-~~~~ 98 (763)
.|.++.|++ ...+.+++.|++|+.|++ .++.+-++..++..+|+..+|..++||+|+.|..+++||.+++ . ..++
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 399999998 667789999999999999 7888888888999999999999999999999999999999864 3 4567
Q ss_pred ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|.+.|.++.|+|... .+++++ .|+++++||.+....++... .+|. +.+-.+.| .++..+
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S------~D~t~klWDvRS~k~plydI-~~h~-------DKvl~vdW---~~~~~I 403 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGS------YDNTVKLWDVRSTKAPLYDI-AGHN-------DKVLSVDW---NEGGLI 403 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEe------cCCeEEEEEeccCCCcceee-ccCC-------ceEEEEec---cCCceE
Confidence 899999999999999875 567887 89999999999865444321 2221 11212222 455689
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
++|+.|.+|+++-
T Consensus 404 vSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 404 VSGGADNKLRIFK 416 (423)
T ss_pred EeccCcceEEEec
Confidence 9999999999875
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.3e-12 Score=141.34 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=143.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
.-++|+ .++.+|+|. ...|++|+.....+..+. +...|+++.|+++|++||+|..+|.|.|||.++.+.++.+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 357899 567777765 457999999444444433 268899999999999999999999999999999999999998
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
|...|.+++|. +..+.+|+ .++.|..+|.+....... ...+|..- +..+ .++++++.+++|+
T Consensus 259 h~~rvg~laW~--~~~lssGs------r~~~I~~~dvR~~~~~~~-~~~~H~qe-------VCgL--kws~d~~~lASGg 320 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGS------RDGKILNHDVRISQHVVS-TLQGHRQE-------VCGL--KWSPDGNQLASGG 320 (484)
T ss_pred cCceeEEEecc--CceEEEec------CCCcEEEEEEecchhhhh-hhhcccce-------eeee--EECCCCCeeccCC
Confidence 99999999999 55677777 899999999886422211 12223222 2223 3457788999999
Q ss_pred CCCcEEEEEcCc-eeeeeeeecccc-----cc--------cccCCCCCceeeec-------------cceeeEEecCCCC
Q 004298 182 KDGSICFNIFGI-FPIGKINIHKFH-----VA--------IPNADEQGTCRLLN-------------ASIYKVALSKDLF 234 (763)
Q Consensus 182 ~DG~I~lw~~~~-~~ig~~~i~~~~-----~~--------~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~ 234 (763)
.|+.+.||+... -+...+.-|... .. .+.+..|+++++|+ +-|..+.||+..+
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence 999999998732 233333322221 11 12445789999998 4588999999998
Q ss_pred EEEEEee
Q 004298 235 HLTVLCS 241 (763)
Q Consensus 235 ~Llv~~~ 241 (763)
.+++...
T Consensus 401 Ei~sthG 407 (484)
T KOG0305|consen 401 ELLSTHG 407 (484)
T ss_pred EEEEecC
Confidence 8887643
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.9e-11 Score=117.46 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=128.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc-------C-----ce-EEEe----cCCCcEEEEEEccCCCEEEEEEcCCcE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN-------W-----QR-LWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTI 85 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-------~-----~~-v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V 85 (763)
.|.+++|+|.|.+.|+|++..+.+|.... + ++ .... .|.+.|.|.+|+|+|++||+|+.|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 49999999999999999999998776531 0 11 1111 266789999999999999999999999
Q ss_pred EEEEccC--CeEE---EEecccCCceeEEEeecC----CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccc
Q 004298 86 TLHDVEN--GKLL---RSLKSHTVAVVCLNWEED----AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFT 156 (763)
Q Consensus 86 ~lwdve~--g~~~---~~l~~h~~~V~~l~ws~~----~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~ 156 (763)
++.-... .... ..+..|.+.|..++|..+ +..+++++ -.|..|.+-|... .......++|++.+
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-----agdc~iy~tdc~~--g~~~~a~sghtghi 186 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-----AGDCKIYITDCGR--GQGFHALSGHTGHI 186 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-----CCcceEEEeecCC--CCcceeecCCcccE
Confidence 9987653 2222 246779999999999754 34666665 1355555545433 22233456677655
Q ss_pred cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEE
Q 004298 157 DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHL 236 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~L 236 (763)
+. ...-++-++++|+.|.+|++|+.+....-..- .. .+..++ +-...|..++..|.|+.|
T Consensus 187 ---------la-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l--~~--~~~~~g------lessavaav~vdpsgrll 246 (350)
T KOG0641|consen 187 ---------LA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTL--DN--DFHDGG------LESSAVAAVAVDPSGRLL 246 (350)
T ss_pred ---------EE-EEEecCcEEEccCCCceEEEEeeeccceeeec--cC--cccCCC------cccceeEEEEECCCccee
Confidence 11 12234568999999999999997654322211 10 011111 111357889999999888
Q ss_pred EEEeecC
Q 004298 237 TVLCSGQ 243 (763)
Q Consensus 237 lv~~~d~ 243 (763)
+....|.
T Consensus 247 ~sg~~ds 253 (350)
T KOG0641|consen 247 ASGHADS 253 (350)
T ss_pred eeccCCC
Confidence 7766554
No 103
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.41 E-value=2.7e-12 Score=133.17 Aligned_cols=109 Identities=24% Similarity=0.481 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--------C-----ceEEEec-----CCCcEEEEEEccCCCEEEEEEcCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN--------W-----QRLWTIS-----PGKSVTSLCWRPDGKAIAVGLEDG 83 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--------~-----~~v~~~~-----~~~~V~~l~wspDG~~Lasg~~Dg 83 (763)
..|+++.|+|+|+++|+|+++|.|.+|... . ...|... |.+.|..++|+||+.++++|+.|+
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN 145 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc
Confidence 349999999999999999999999999975 2 2234332 778899999999999999999999
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
++++||+..|.....+..|...|..++|.|-++++++-+ .|+..+.+
T Consensus 146 s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s------~dr~~~~~ 192 (434)
T KOG1009|consen 146 SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS------SDRHPEGF 192 (434)
T ss_pred eEEEEEeccceeEeeccccccccceeecchhhhhhhhhc------cCccccee
Confidence 999999999999999999999999999999999999877 55544444
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=8.8e-12 Score=131.13 Aligned_cols=215 Identities=16% Similarity=0.151 Sum_probs=152.7
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecC-----CCcEEEEEEccCCCEEEEEEcC
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISP-----GKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~-----~~~V~~l~wspDG~~Lasg~~D 82 (763)
.++..+.+++- +|.+.+|.|+|. .+++++.....+.|++...++-.+.+ ...+.....+||+++||..+..
T Consensus 248 ~~lqS~~l~~f---Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~ 324 (514)
T KOG2055|consen 248 PKLQSIHLEKF---PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN 324 (514)
T ss_pred hhheeeeeccC---ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC
Confidence 34444445443 399999999998 88889999999999996666666652 2357788999999999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
|.|.|....+++.+.+++. .+.|..+.|+.+++.+..++ .+|.+.+||++.... .. .|++ +.+
T Consensus 325 G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~------~~GeV~v~nl~~~~~--~~------rf~D--~G~ 387 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASG------GTGEVYVWNLRQNSC--LH------RFVD--DGS 387 (514)
T ss_pred ceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEc------CCceEEEEecCCcce--EE------EEee--cCc
Confidence 9999999999999999875 78999999999998776665 699999999987411 11 1111 111
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee-------ee-----eccccc-------ccccCCCCCceeeec--
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK-------IN-----IHKFHV-------AIPNADEQGTCRLLN-- 221 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-------~~-----i~~~~~-------~~~s~~~~~~~~l~~-- 221 (763)
+.....+.+.++.+||+|+..|.|.||+.......+ +. +..+.. .+.+...+..+||-|
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 222344566788899999999999999854421111 10 000000 011333445555544
Q ss_pred ---------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ---------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ---------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.+++++|||.|.+|+++..++
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 4589999999999999886655
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.38 E-value=9.8e-13 Score=134.42 Aligned_cols=152 Identities=20% Similarity=0.271 Sum_probs=122.6
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEe
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l 99 (763)
.|.++.|+|.. ++||+++.|+.|.+|++ .++++.++.-+..-+.|+|+|.+-.|.+|..|..++.+|+++ ...+..+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence 48899999966 78889999999999999 777888877777888999999888999999999999999986 5677888
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|.+.|..+.|+|.|+-+++|| .|++|++|+.....+.-.-+.... . ..++..++-+..++++
T Consensus 269 ~dhvsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~SRdiYhtkRM-q---------~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGHSRDIYHTKRM-Q---------HVFCVKYSMDSKYIIS 332 (433)
T ss_pred cccceeEEEeccCCCcchhcccc------ccceEEEeecCCCcchhhhhHhhh-h---------eeeEEEEeccccEEEe
Confidence 89999999999999999999999 899999998875322111110000 0 0133345566678999
Q ss_pred EcCCCcEEEEE
Q 004298 180 GDKDGSICFNI 190 (763)
Q Consensus 180 gs~DG~I~lw~ 190 (763)
||.||+|++|-
T Consensus 333 GSdd~nvRlWk 343 (433)
T KOG0268|consen 333 GSDDGNVRLWK 343 (433)
T ss_pred cCCCcceeeee
Confidence 99999999995
No 106
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=5.5e-12 Score=130.79 Aligned_cols=150 Identities=18% Similarity=0.109 Sum_probs=115.4
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC---CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN---GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~---g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
|..+|.-+.||++|++||+|+.|.+..||.+.. -+..+++.+|..+|..+.|+||.+++.+|+ .+..+++|
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg------~~e~~~lw 296 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG------FDEVLSLW 296 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC------chHheeec
Confidence 778999999999999999999999999999753 345788899999999999999999999998 67779999
Q ss_pred CCCCCC-CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCC
Q 004298 137 PPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQG 215 (763)
Q Consensus 137 d~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~ 215 (763)
|..+.- ..... ++ .+ .+. .++++.|++..+++|+.|++|..|+.+.-..+.....
T Consensus 297 Dv~tgd~~~~y~--~~-~~------~S~--~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------- 352 (519)
T KOG0293|consen 297 DVDTGDLRHLYP--SG-LG------FSV--SSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------------- 352 (519)
T ss_pred cCCcchhhhhcc--cC-cC------CCc--ceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-------------
Confidence 987631 11111 11 11 122 2334557777899999999999998776554443211
Q ss_pred ceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 216 TCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 216 ~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+ +..|+++++++||++++.++.|+
T Consensus 353 --r--~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 353 --R--DPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred --c--cceeEEEEEcCCCcEEEEEeccc
Confidence 1 02478999999999999999887
No 107
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.8e-11 Score=131.02 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=160.6
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc--eEEEecCCCcEEEEEEccCCCEEEEEEcCCc
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQ--RLWTISPGKSVTSLCWRPDGKAIAVGLEDGT 84 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~--~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~ 84 (763)
.+++.-+|-.-.|.+|.++|++.+.+.||++-.+|.|-+|++ +|- ++........|.+++|+ +|..|++.+.+|.
T Consensus 13 m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 13 MQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGS 91 (691)
T ss_pred eEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCce
Confidence 345555555555788999999999999999999999999999 443 23333356789999999 5567888999999
Q ss_pred EEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
|.-||+.+++.+..+....+.|++|+.+|.+..++.|+ +||.+.+++..+..-.... .+. ...-.
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc------ddGvl~~~s~~p~~I~~~r------~l~---rq~sR 156 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC------DDGVLYDFSIGPDKITYKR------SLM---RQKSR 156 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeec------CCceEEEEecCCceEEEEe------ecc---cccce
Confidence 99999999999999988889999999999998888887 7887777776653111110 111 11112
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCcee---eeeeeeccc---------------ccccccCCCCCceeeec-----
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFP---IGKINIHKF---------------HVAIPNADEQGTCRLLN----- 221 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~---ig~~~i~~~---------------~~~~~s~~~~~~~~l~~----- 221 (763)
.++..+++++..+++|+.||.|++|+...-. +.+..+..+ ...+.++...|.++.||
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 3556677888889999999999999754421 111111111 12234777889999998
Q ss_pred ---------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ---------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ---------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+-|.+++-++++.++++++-|+
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 4588888899988888887765
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.38 E-value=1.8e-11 Score=138.90 Aligned_cols=178 Identities=21% Similarity=0.215 Sum_probs=138.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|+++++.--++++.+|+.|.+++||+. +|+....+. |...|.++...+ ..+.+|+.|.+|++|+++++..++.+
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEe
Confidence 45999999887899999999999999999 888888887 778888887644 57888999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|.++|.++..+ +..+++|+ .|+++++|++.+ .++.....+|+..+ ..+ ...+. +.+++
T Consensus 328 ~~h~~~V~~v~~~--~~~lvsgs------~d~~v~VW~~~~--~~cl~sl~gH~~~V-------~sl--~~~~~-~~~~S 387 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD--EPLLVSGS------YDGTVKVWDPRT--GKCLKSLSGHTGRV-------YSL--IVDSE-NRLLS 387 (537)
T ss_pred ccccccEEEEEec--CCEEEEEe------cCceEEEEEhhh--ceeeeeecCCcceE-------EEE--EecCc-ceEEe
Confidence 9999999999988 77888888 899999999984 23333344555544 112 22232 78999
Q ss_pred EcCCCcEEEEEcCce--eeeeeeecccc--------cccccCCCCCceeeec
Q 004298 180 GDKDGSICFNIFGIF--PIGKINIHKFH--------VAIPNADEQGTCRLLN 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~~--~ig~~~i~~~~--------~~~~s~~~~~~~~l~~ 221 (763)
|+.|++|++|++... .+..+..+... ....+++.++.+++|+
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEee
Confidence 999999999998776 22222222211 1224677899999997
No 109
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.37 E-value=1.7e-12 Score=140.37 Aligned_cols=113 Identities=32% Similarity=0.514 Sum_probs=98.9
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceE--------EEe-cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEcc
Q 004298 23 QIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRL--------WTI-SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v--------~~~-~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve 91 (763)
-|+.+.|+| |...||++++||.|.+|++..+-+ ..+ .|+.+|+++.|+| -...||+++.|-+|+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 488999999 668999999999999999932211 111 2788999999999 56799999999999999999
Q ss_pred CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
+++...++.+|++.|..++|+|+|+.+++.+ .|++++++..+..
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc------KDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVC------KDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeee------cCceEEEeCCCCC
Confidence 9999999999999999999999999999988 8999999998764
No 110
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.37 E-value=5.2e-12 Score=129.83 Aligned_cols=115 Identities=18% Similarity=0.379 Sum_probs=96.8
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCc---eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 16 FDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQ---RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~---~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
|.+. |-.++|||+. ..+|+|+.||+|+||++ .+. .+..-.|+.-|+.|.|+-+-.+||+|++||+++|||+
T Consensus 256 H~~S----VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 256 HTKS----VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred cccc----hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 5555 8999999976 78999999999999999 442 3444458889999999998889999999999999999
Q ss_pred cC---CeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCC
Q 004298 91 EN---GKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~---g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++ ++.+.+++.|..+|+++.|+|... .+++++ .|..+.+||+.-
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg------~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG------EDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEecc------CCCcEEEEEeec
Confidence 74 678899999999999999999653 445555 799999998753
No 111
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.36 E-value=1.3e-11 Score=126.87 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=132.7
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEEccC-----------------ceEEEec-CCCcEEEEEEccC-CCEEEEEEc
Q 004298 23 QIKIAEWNPE--KDLLAMATEDSKILLHRFNW-----------------QRLWTIS-PGKSVTSLCWRPD-GKAIAVGLE 81 (763)
Q Consensus 23 ~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~-----------------~~v~~~~-~~~~V~~l~wspD-G~~Lasg~~ 81 (763)
.|..+.-+|- ..+.|+-+..|.|.||++.. .+++++. |+..=.+|+|||- .-.|++|.-
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 3555665554 46778888999999999732 2455554 6777899999992 225788888
Q ss_pred CCcEEEEEccCCeEE---EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 82 DGTITLHDVENGKLL---RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 82 Dg~V~lwdve~g~~~---~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
-+.|++|...+|... ..+.+|+..|-.+.|+|... .+++|| -|++|++||++....+..-....+
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS------~DgsIrIWDiRs~~~~~~~~~kAh----- 301 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS------CDGSIRIWDIRSGPKKAAVSTKAH----- 301 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee------cCceEEEEEecCCCccceeEeecc-----
Confidence 889999999887654 33668999999999999764 678888 899999999987422211111111
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
...++.++| +.+..+|++|+.||+++||+++.|..++. -..++-+.++|+++.|+|.-...+
T Consensus 302 --~sDVNVISW--nr~~~lLasG~DdGt~~iwDLR~~~~~~p--------------VA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 302 --NSDVNVISW--NRREPLLASGGDDGTLSIWDLRQFKSGQP--------------VATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred --CCceeeEEc--cCCcceeeecCCCceEEEEEhhhccCCCc--------------ceeEEeccCCeeEEEeccccCceE
Confidence 122334444 34555899999999999999988876621 123445557899999998655544
Q ss_pred EEe
Q 004298 238 VLC 240 (763)
Q Consensus 238 v~~ 240 (763)
.++
T Consensus 364 aas 366 (440)
T KOG0302|consen 364 AAS 366 (440)
T ss_pred Eec
Confidence 443
No 112
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.35 E-value=9.5e-12 Score=129.17 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=133.8
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcc----Cc---eEEEe----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFN----WQ---RLWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~----~~---~v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
|..+.|.++.. .+|+|+.|..|++|.++ ++ .+--. .|...|+++.|+|+|..||+|+++|.|.+|-..
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 99999999775 99999999999999982 33 23222 278899999999999999999999999999765
Q ss_pred --------C--------CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 92 --------N--------GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 92 --------~--------g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
+ ......+++|...|..++|+|++.++++++ .|.++++||.... .+......|...
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s------~dns~~l~Dv~~G--~l~~~~~dh~~y 167 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS------VDNSVRLWDVHAG--QLLAILDDHEHY 167 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee------ccceEEEEEeccc--eeEeeccccccc
Confidence 2 224456788999999999999999999998 8999999998763 121222233322
Q ss_pred ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeee-cccccccccCCCCCceeeecc-----ceeeEEe
Q 004298 156 TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINI-HKFHVAIPNADEQGTCRLLNA-----SIYKVAL 229 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i-~~~~~~~~s~~~~~~~~l~~~-----~I~~v~~ 229 (763)
+ ...++++-..++++-+.|...+.+.......+..-- ..++...........+|+++. -...++|
T Consensus 168 v---------qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 168 V---------QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred c---------ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 2 112334445567776767655554433322221100 011111112223345666652 3567899
Q ss_pred cCCCCEEEEE
Q 004298 230 SKDLFHLTVL 239 (763)
Q Consensus 230 SpDg~~Llv~ 239 (763)
+|||..|+.-
T Consensus 239 TPdG~llvtP 248 (434)
T KOG1009|consen 239 TPDGSLLVTP 248 (434)
T ss_pred CCCCcEEEcc
Confidence 9999877653
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=6e-12 Score=126.28 Aligned_cols=162 Identities=18% Similarity=0.255 Sum_probs=125.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceE---------------------------------------EEec-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRL---------------------------------------WTIS- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v---------------------------------------~~~~- 59 (763)
+.|.+++|+|.+.++++++.|++-.||+. +|..- ..+.
T Consensus 191 GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 191 GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 45999999999999999999999999994 33210 0010
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|...|.+..|-..|+.+++++.|.+-.+||+++|+.++.+.+|....+.++-+|+.+++++.+ .|.+.++||.+
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS------rDtTFRLWDFR 344 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS------RDTTFRLWDFR 344 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec------cCceeEeccch
Confidence 223478888999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce--eeeeee
Q 004298 140 PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF--PIGKIN 200 (763)
Q Consensus 140 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~--~ig~~~ 200 (763)
+.++.. ..+.||+..+ .... + ...+.+++|+.|.+|++|++... ++.++.
T Consensus 345 eaI~sV-~VFQGHtdtV-------TS~v--F-~~dd~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 345 EAIQSV-AVFQGHTDTV-------TSVV--F-NTDDRVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred hhccee-eeecccccce-------eEEE--E-ecCCceeecCCCceEEEeeeccccCcceeee
Confidence 754332 2234554433 1111 2 23356899999999999986643 444443
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.33 E-value=1.3e-11 Score=126.26 Aligned_cols=201 Identities=9% Similarity=0.116 Sum_probs=138.7
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
++|.+++=+|.. ..+|+|+.||.|.+|++ .-..++.+. |.+.|.+|++.. ..++++++|.+|+.|.++ |..+++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~t 143 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHT 143 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCccee
Confidence 569999999987 89999999999999999 556677776 778999999987 678888999999999854 233333
Q ss_pred ec---------------------------------------ccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCC
Q 004298 99 LK---------------------------------------SHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 99 l~---------------------------------------~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+. .....|.++.|+|... .+++++ .|+.+.++|.
T Consensus 144 ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~------sDrsIvLyD~ 217 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA------SDRSIVLYDL 217 (433)
T ss_pred eeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeec------cCCceEEEec
Confidence 32 1123345555555443 445555 7999999999
Q ss_pred CCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee--e----------eeeeeccccc
Q 004298 139 APRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP--I----------GKINIHKFHV 206 (763)
Q Consensus 139 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~--i----------g~~~i~~~~~ 206 (763)
+...+ +....- ....+.++ ++|....+++|++|.+++.++..... . -.++......
T Consensus 218 R~~~P-l~KVi~---------~mRTN~Is--wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 218 RQASP-LKKVIL---------TMRTNTIC--WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred ccCCc-cceeee---------ecccccee--cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 86322 111110 11112234 44577789999999999988754321 1 1222223333
Q ss_pred ccccCCCCCceeeec---------------cceeeEEecCCCCEEEEEeecC
Q 004298 207 AIPNADEQGTCRLLN---------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 207 ~~~s~~~~~~~~l~~---------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+++.|+++|++. ..|.++.||.|.++++.++.+.
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 456888999999986 4689999999999888776554
No 115
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=4e-11 Score=122.81 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=133.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC--CCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC-C---e
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP--GKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN-G---K 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~-g---~ 94 (763)
..+..++|+|.-..+|+++.|..|++|+-+....-.+++ ...|+|++|+| .++-|++|+..| |+||.... + .
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 347889999988899999999999999987665555553 46799999999 567889998766 78998652 2 2
Q ss_pred EE----------EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CCCCCcccCCcccccCCcccc
Q 004298 95 LL----------RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 95 ~~----------~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~ 163 (763)
.+ .+.++| .+|++|.|++||..+++++ +.+..+++||..+.. .+++. .+-.++.
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS-----~gsssi~iWdpdtg~~~pL~~--~glgg~s------- 242 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTAS-----FGSSSIMIWDPDTGQKIPLIP--KGLGGFS------- 242 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecc-----cCcceEEEEcCCCCCcccccc--cCCCcee-------
Confidence 11 112234 6899999999999999988 679999999987642 12220 1111221
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEE-EcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFN-IFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw-~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
-+ .++|++++|..++-|+..++| ...+...-+.... .+.|...+|||+|+.|++++.+
T Consensus 243 -lL--kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg------------------sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 243 -LL--KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG------------------SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred -eE--EEcCCCCEEEEecccceeeeehhcccceecceecc------------------CCceeeeeecCCCCEEEEEEcC
Confidence 12 356888999999999999999 4444333332111 1357789999999999999987
Q ss_pred C
Q 004298 243 Q 243 (763)
Q Consensus 243 ~ 243 (763)
.
T Consensus 302 s 302 (445)
T KOG2139|consen 302 S 302 (445)
T ss_pred C
Confidence 5
No 116
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.32 E-value=2.7e-11 Score=122.38 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=139.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc-cCCeE-
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV-ENGKL- 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv-e~g~~- 95 (763)
.|++.+|++++..+|++.+...|.||+..++..|... |...|++|+|+|.+..|++++.|..-++|.. ..|+.
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 4999999999999999999999999999766666543 7789999999999999999999999999998 44443
Q ss_pred -EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCC
Q 004298 96 -LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 96 -~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
.-.+..++...+|+.|+|....+++|+ .-+.+-+|-......= .......+.+.+ .+.++++
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgS------gar~isVcy~E~ENdWWVsKhikkPirStv---------~sldWhp 156 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGS------GARLISVCYYEQENDWWVSKHIKKPIRSTV---------TSLDWHP 156 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEecc------CccEEEEEEEecccceehhhhhCCccccce---------eeeeccC
Confidence 334556788999999999999999998 5666666543321000 000000111111 3345667
Q ss_pred CeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCce----eeeccceeeEEecCCCCEEEEEeecCcc
Q 004298 173 RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTC----RLLNASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~----~l~~~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
+.-+|+.|+.|++.+++-.-...+..- ..+.+-.+.-..|.+ ..-.+.++.+.|||+|..|..+..|+.+
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdek---pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEK---PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccC---CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 878999999999999873111111111 111110000000000 0112568899999999999999988754
No 117
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=4.6e-11 Score=115.88 Aligned_cols=190 Identities=13% Similarity=0.142 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC--CeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN--GKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~--g~~~ 96 (763)
..+|..++.+-|...+++|+.|..|.+|+. +|+.+..+. |...|+.++|+.+...+++|+-|.++++||-++ -+++
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc
Confidence 446999999999999999999999999999 677677775 889999999999999999999999999999764 3344
Q ss_pred EEeccc--------------------------------------CCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 97 RSLKSH--------------------------------------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 97 ~~l~~h--------------------------------------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+.+... ..+|+|+.|+++++....++ .|+++++.|.
T Consensus 139 Qildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~------l~stlrLlDk 212 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS------LDSTLRLLDK 212 (307)
T ss_pred chhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee------ccceeeeccc
Confidence 333321 24677777777777665555 6777777765
Q ss_pred CCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCce
Q 004298 139 APRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTC 217 (763)
Q Consensus 139 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~ 217 (763)
.+ .++.....||.... ..+.++.......+++|++||.|++|+.-.- .+-+...+. .
T Consensus 213 ~t--GklL~sYkGhkn~e-------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-----------~-- 270 (307)
T KOG0316|consen 213 ET--GKLLKSYKGHKNME-------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-----------T-- 270 (307)
T ss_pred ch--hHHHHHhcccccce-------eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-----------c--
Confidence 54 22222222332211 1133445566678999999999999984322 222221111 0
Q ss_pred eeeccceeeEEecCCCCEEEEEeec
Q 004298 218 RLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 218 ~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.-+.++++.|....+++++.+
T Consensus 271 ----v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 271 ----VIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred ----eeEEeeecccCccceeEecCC
Confidence 016678888887777776543
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.31 E-value=2e-11 Score=120.49 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=97.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecC---------------------------------------
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP--------------------------------------- 60 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--------------------------------------- 60 (763)
.+.|++++.+-+.+.+++|+.|.++++|+. +|+.+...+.
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 355999999999999999999999999999 7765544321
Q ss_pred ---------------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-eEEEEecccCCceeEEEeecCCCceeccCCC
Q 004298 61 ---------------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGN 124 (763)
Q Consensus 61 ---------------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~ 124 (763)
...++..-|.|-|++|++|..||.|.+||+++| +.+.+.+.|...|+.|.++++..++++++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-- 209 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-- 209 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc--
Confidence 123788899999999999999999999999998 55666788999999999999999999999
Q ss_pred CCcccCCceeecCCCC
Q 004298 125 IPTYEDRTSRFFPPAP 140 (763)
Q Consensus 125 ~~~~~d~~i~~wd~~~ 140 (763)
.|.+.++||.+.
T Consensus 210 ----~Dttakl~D~~t 221 (327)
T KOG0643|consen 210 ----KDTTAKLVDVRT 221 (327)
T ss_pred ----cCccceeeeccc
Confidence 899999998764
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=2.7e-11 Score=127.15 Aligned_cols=194 Identities=18% Similarity=0.203 Sum_probs=134.1
Q ss_pred eecCCCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEEccCc----eEEEe-------------------cCCCc
Q 004298 14 LQFDKPVASQIKIAEWNP-------EKDLLAMATEDSKILLHRFNWQ----RLWTI-------------------SPGKS 63 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP-------~~~lLA~~s~Dg~V~v~~l~~~----~v~~~-------------------~~~~~ 63 (763)
.+|+--+|..-.|++|-. .|+++|+|+.|..|.||++.-. +...+ .|...
T Consensus 166 vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda 245 (463)
T KOG0270|consen 166 VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA 245 (463)
T ss_pred EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHH
Confidence 445555566667888843 3689999999999999998311 00111 13345
Q ss_pred EEEEEEccCC-CEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCC
Q 004298 64 VTSLCWRPDG-KAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 64 V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
|.++.|+-+- ..||+|+.|.+|++||+.+|++..++..|...|.++.|+|.. ..+.+|+ .|+++++.|.+..
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs------~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS------YDGTVALKDCRDP 319 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc------ccceEEeeeccCc
Confidence 6788888754 489999999999999999999999999999999999999865 5778888 8999999999851
Q ss_pred CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeec
Q 004298 142 IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 142 ~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
.. ......+ ...+..+.|.++.. +.+++++.||+++-++.+... ..--+++.++
T Consensus 320 -~~----s~~~wk~----~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~----------------~~vwt~~AHd 373 (463)
T KOG0270|consen 320 -SN----SGKEWKF----DGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPG----------------KPVWTLKAHD 373 (463)
T ss_pred -cc----cCceEEe----ccceEEEEecCCCc-eeEEEecCCceEEeeecCCCC----------------CceeEEEecc
Confidence 11 1111111 12334455655443 578888999999988765431 0112344455
Q ss_pred cceeeEEecCCCCEEEEE
Q 004298 222 ASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~ 239 (763)
++|..+++++.-..+++.
T Consensus 374 ~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST 391 (463)
T ss_pred CCcceEEecCCCCcceee
Confidence 667777777665555544
No 120
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.30 E-value=9.6e-11 Score=118.76 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCC----CEEEEEeCCCeEEEEEc-cCceEEEe-cCCCcEEEEEEccC-CCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEK----DLLAMATEDSKILLHRF-NWQRLWTI-SPGKSVTSLCWRPD-GKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~----~lLA~~s~Dg~V~v~~l-~~~~v~~~-~~~~~V~~l~wspD-G~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..-..++|+-+. .++|+++.-|.|+|.+. .++....+ .||..|+.|.+.|+ .+++.+|+.|.+|++|++++..
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 335678887754 47888999999999999 45544444 39999999999995 5799999999999999999999
Q ss_pred EEEEec---ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 95 LLRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 95 ~~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
++..+- +|.+.|.++.|+++|.++++++ .|.++++|++.
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG------mDhslk~W~l~ 211 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCG------MDHSLKLWRLN 211 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccC------CcceEEEEecC
Confidence 988864 6899999999999999999999 89999999876
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=9.2e-11 Score=118.36 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=115.1
Q ss_pred CCeEEEEEcCCCC--EEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKD--LLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~--lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|+++.|.|.-. .|.+|++||.|.+||. .|..+-.++ |.+.|+.++.+|.|++-.+.+.|+.+++|++-+|+...
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 5699999998764 7889999999999999 888887776 77789999999999999999999999999999888765
Q ss_pred EecccCCceeEEEeecCCCceeccCCC---------------------------------CCcccCCceeecCCCCCCCC
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGN---------------------------------IPTYEDRTSRFFPPAPRIPQ 144 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~---------------------------------~~~~~d~~i~~wd~~~~~~~ 144 (763)
.++- ...-+.+.|+|.|.+++.++.+ ..+.+|+.+++||.....+
T Consensus 164 v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~- 241 (362)
T KOG0294|consen 164 VLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTP- 241 (362)
T ss_pred eecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCcc-
Confidence 5543 2233448888888755443211 0111345555555543110
Q ss_pred CCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 145 MPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 145 l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+....+ .++.+..+.....+...+|+++++||.|++|+.++-
T Consensus 242 -~~~~~A-------H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 -LTEFLA-------HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -ceeeec-------chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 000111 122333444444566789999999999999998765
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=3.5e-11 Score=120.02 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=122.0
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccC---CCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPD---GKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspD---G~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
-..|..+-|-| |.-.+.+++.|.+++||+. +-|....++-.+.|.+-+|+|= -.++|+|..|-.|++.|+.+|..
T Consensus 101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 35699999999 4467788999999999999 6677888888889999999993 44889999999999999999999
Q ss_pred EEEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCC---CCCCcccCCcccc----cCCccccccee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIP---QMPGLVSGDTGFT----DDSEDSFRELA 167 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~---~l~~~~s~~~~~~----~~~~~~~~~~~ 167 (763)
-|++.+|...|.++.|+|...+ +++|+ -|+.+|+||++.... .+..+. +....+ ......+ ..
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRrasgcf~~lD~hn-~k~~p~~~~n~ah~gkv--ng 251 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRASGCFRVLDQHN-TKRPPILKTNTAHYGKV--NG 251 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecC------CCceEEEEEeecccceeEEeeccc-CccCcccccccccccee--ee
Confidence 9999999999999999998875 56777 899999999875311 111110 000000 0001112 22
Q ss_pred cccCCCeeEEEEEcCCCcEEEEE
Q 004298 168 NSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
.++..++.++++++.|.++++|.
T Consensus 252 la~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eeecccchhhhhccCccceEEee
Confidence 33456777899999999999996
No 123
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.28 E-value=1.4e-10 Score=126.33 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=140.8
Q ss_pred ccccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC------------------------
Q 004298 6 AMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG------------------------ 61 (763)
Q Consensus 6 ~~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~------------------------ 61 (763)
.++.+..++...|. .|.+++|+.+|.++|+|+.|..|.+|...-+-+...+|+
T Consensus 41 ndG~llqtLKgHKD---tVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFg 117 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKD---TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFG 117 (1081)
T ss_pred CCcccccccccccc---eEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcc
Confidence 44555556654444 499999999999999999999999999743333333222
Q ss_pred ---------------CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec---ccCCceeEEEeecCCC-----ce
Q 004298 62 ---------------KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK---SHTVAVVCLNWEEDAQ-----PS 118 (763)
Q Consensus 62 ---------------~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~---~h~~~V~~l~ws~~~~-----~l 118 (763)
.+|.+.+|..||+++|.|-.||+|.|-+ .+|+..-.+. +.+++|++++|+|+.. .+
T Consensus 118 lWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 118 LWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred ccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 2378889999999999999999999986 3455444443 3568999999999753 22
Q ss_pred eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK 198 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~ 198 (763)
+... +..++.|+....+. -+. +..-.++..+....+++.+++.|+.||.++++.-+....|+
T Consensus 197 aV~D------W~qTLSFy~LsG~~-------Igk-----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGT 258 (1081)
T KOG1538|consen 197 AVAD------WGQTLSFYQLSGKQ-------IGK-----DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGT 258 (1081)
T ss_pred EEEe------ccceeEEEEeccee-------ecc-----cccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEee
Confidence 2222 45555555444321 000 01112333444556889999999999999999766666666
Q ss_pred eeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccc
Q 004298 199 INIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEE 248 (763)
Q Consensus 199 ~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~ 248 (763)
+- . .+..|.+++..|++++..++|.|+.+.|.
T Consensus 259 vg-----------~-------~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 259 VG-----------E-------QDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred cc-----------c-------cceeEEEEEEccCCceEEEEEccCeeehh
Confidence 51 1 23468899999999999999999855443
No 124
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=131.54 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=130.1
Q ss_pred CEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEee
Q 004298 34 DLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws 112 (763)
+.++.++.||.+.+.+-++..-..+. |...+.|-+|+|||.-|.+++.||.|++|. ++|-...++-....+|.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 68889999999887776665444444 778899999999999999999999999998 5666555555556799999999
Q ss_pred cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 113 EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 113 ~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
|+...+..+. .+.+.+=++.+.... -....|.+.+ ++..+++..+++++|++|-+.++|+--
T Consensus 155 p~S~~vl~c~-------g~h~~IKpL~~n~k~--i~WkAHDGii---------L~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 155 PNSNSIVFCQ-------GGHISIKPLAANSKI--IRWRAHDGLV---------LSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred CCCCceEEec-------CCeEEEeecccccce--eEEeccCcEE---------EEeecCccccceeecCCceeEEeeccc
Confidence 9987666553 344444333322111 1123455655 566677888999999999999999732
Q ss_pred ceeeeeeeecccccccccCCCCCceeeec-----------cceeeEEecCCCCEEEEEeecC
Q 004298 193 IFPIGKINIHKFHVAIPNADEQGTCRLLN-----------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 193 ~~~ig~~~i~~~~~~~~s~~~~~~~~l~~-----------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.-+.-+-..+..+....+-..+..+-+|. ++|..++||+||+++.+++..+
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred CcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCc
Confidence 22221111222222211122222233332 7899999999999999988765
No 125
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=127.10 Aligned_cols=191 Identities=16% Similarity=0.105 Sum_probs=143.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.++|+++.|.-....+++|+.|.+|++|++ +.....++.++..+..|+.+ +..+++|..|++|+.||++++.+....
T Consensus 261 tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv 338 (459)
T KOG0288|consen 261 TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV 338 (459)
T ss_pred ccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe
Confidence 467999999877766999999999999999 65566667788888888887 578999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..+ +.|+++..++++..+.+++ .|.++++.|.+..--.. ..+ ..++.. ..+.....++|++.++++
T Consensus 339 ~~g-g~vtSl~ls~~g~~lLsss------RDdtl~viDlRt~eI~~--~~s-A~g~k~----asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 339 PLG-GRVTSLDLSMDGLELLSSS------RDDTLKVIDLRTKEIRQ--TFS-AEGFKC----ASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred ecC-cceeeEeeccCCeEEeeec------CCCceeeeecccccEEE--Eee-cccccc----ccccceeEECCCCceeee
Confidence 876 5999999999999888887 89999999988741111 111 111111 111223446788999999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
|+.||.|+||....-++-..--. .+. +..|.+++|+|.|.+|+.+..+
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~--------s~s-------~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSL--------STS-------NAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ccCCCcEEEEEccCceEEEEecc--------CCC-------CcceEEEEEcCCCchhhcccCC
Confidence 99999999998655444333100 000 1248899999999999877543
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.28 E-value=8.6e-11 Score=117.29 Aligned_cols=207 Identities=15% Similarity=0.116 Sum_probs=143.2
Q ss_pred cCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc-cCc------eEEE------ec----CCCcEEEEEEcc-CCCEE
Q 004298 16 FDKPVASQIKIAEWNP-EKDLLAMATEDSKILLHRF-NWQ------RLWT------IS----PGKSVTSLCWRP-DGKAI 76 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~------~v~~------~~----~~~~V~~l~wsp-DG~~L 76 (763)
+.++..+.|..+...| .|+++.+|+.||.|.||++ +.. .+.+ .. |.-.|..+-|-| |.-++
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4456667899999998 4699999999999999999 221 1111 11 333689999999 77799
Q ss_pred EEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCC---CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 77 AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA---QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~---~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
.+++-|.++++||..+-+....|+. ++.|..-+|+|-. -++++|- .+-.+++.|+... ......+||.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gt------r~~~VrLCDi~SG--s~sH~LsGHr 188 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGT------RDVQVRLCDIASG--SFSHTLSGHR 188 (397)
T ss_pred ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEec------CCCcEEEEeccCC--cceeeecccc
Confidence 9999999999999999888888865 6889999999854 3566665 7889999998763 2222234443
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
. .+-.+.|++... -+|++|+.||.|++|+.+.-. ....+.++...++. ..+-.-+.+.+..++|+.
T Consensus 189 ~-------~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~----~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 189 D-------GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI----LKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred C-------ceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCcc----ccccccccceeeeeeecc
Confidence 3 233455655444 489999999999999865321 11222222111110 000012336788999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
||.+++..+.++
T Consensus 257 d~~~l~~~gtd~ 268 (397)
T KOG4283|consen 257 DARYLASCGTDD 268 (397)
T ss_pred cchhhhhccCcc
Confidence 999999988776
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=5.8e-10 Score=118.30 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEec
Q 004298 24 IKIAEWNPEKDLL-AMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 24 V~~l~~sP~~~lL-A~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+..++|+|++..+ ++++.++.|.+|+. +++.+..+..+..+..++|+|+|+.++++ +.|+.|++||+++++.+..+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence 6779999999876 56678899999999 45555556555557789999999987665 468999999999988888775
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccC-CceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE-E
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYED-RTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL-C 178 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d-~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L-~ 178 (763)
. ...+.++.|+|++..+++++ .+ ..+.+|+...... ......+ .....+ .+++++..+ +
T Consensus 113 ~-~~~~~~~~~~~dg~~l~~~~------~~~~~~~~~d~~~~~~-~~~~~~~---------~~~~~~--~~s~dg~~l~~ 173 (300)
T TIGR03866 113 V-GVEPEGMAVSPDGKIVVNTS------ETTNMAHFIDTKTYEI-VDNVLVD---------QRPRFA--EFTADGKELWV 173 (300)
T ss_pred C-CCCcceEEECCCCCEEEEEe------cCCCeEEEEeCCCCeE-EEEEEcC---------CCccEE--EECCCCCEEEE
Confidence 3 34578899999999888776 33 3455667653210 0000000 001112 234555555 4
Q ss_pred EEcCCCcEEEEEcCce
Q 004298 179 SGDKDGSICFNIFGIF 194 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~ 194 (763)
++..+|.|++|+....
T Consensus 174 ~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 174 SSEIGGTVSVIDVATR 189 (300)
T ss_pred EcCCCCEEEEEEcCcc
Confidence 5556999999987654
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2e-10 Score=130.02 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=145.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc------------CceEEEecC------------------------------
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN------------WQRLWTISP------------------------------ 60 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~------------~~~v~~~~~------------------------------ 60 (763)
+-+.++|.|+|..|.+++.||.|++|..+ +..+..+.+
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeee
Confidence 47789999999999999999999999862 122222210
Q ss_pred -CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 61 -GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 61 -~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.-++++++++-+|+++|.|++|-.|++.++.++....++++|.++|.++.++|++.++++.+ -||.+++|++.
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss------~dG~v~iw~~~ 168 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS------CDGKVQIWDLQ 168 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe------cCceEEEEEcc
Confidence 01478999999999999999999999999999999999999999999999999999999987 79999999987
Q ss_pred CCC--CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCc
Q 004298 140 PRI--PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGT 216 (763)
Q Consensus 140 ~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~ 216 (763)
... ..+++. .....+. ....+ ....++|++..++....|+.|++|....+.. ..+. .
T Consensus 169 ~~~~~~tl~~v-~k~n~~~--~s~i~--~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~------------- 228 (933)
T KOG1274|consen 169 DGILSKTLTGV-DKDNEFI--LSRIC--TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--D------------- 228 (933)
T ss_pred cchhhhhcccC-Ccccccc--cccee--eeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--c-------------
Confidence 631 111111 0111111 01112 2344567766777778899999986444321 1111 0
Q ss_pred eeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 217 CRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 217 ~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
......+..++|||+|+||++++.++ .|.++..++
T Consensus 229 -~~~ss~~~~~~wsPnG~YiAAs~~~g------------~I~vWnv~t 263 (933)
T KOG1274|consen 229 -KLSSSKFSDLQWSPNGKYIAASTLDG------------QILVWNVDT 263 (933)
T ss_pred -cccccceEEEEEcCCCcEEeeeccCC------------cEEEEeccc
Confidence 00112266899999999999988766 788888886
No 129
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.4e-10 Score=112.28 Aligned_cols=215 Identities=11% Similarity=-0.001 Sum_probs=141.8
Q ss_pred cccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcC
Q 004298 7 MRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATE--DSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 7 ~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~--Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D 82 (763)
+++++.++...|- +|..+.|--...-+..++. |.+|+.-++ +.+.+.-+. |.+.|++|+.+|-+..+++++.|
T Consensus 45 ~g~~~~ti~skky---G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D 121 (311)
T KOG1446|consen 45 SGKQVKTINSKKY---GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD 121 (311)
T ss_pred CCceeeEeecccc---cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccC
Confidence 3444444443332 3666777554444444444 788999998 445555555 88999999999988999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~ 161 (763)
++|++||++..++..-+.. ..-..++|.|.|-.+|.+. ....|+++|.+.. ..+.. .|.-....
T Consensus 122 ~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~------~~~~IkLyD~Rs~dkgPF~-------tf~i~~~~ 186 (311)
T KOG1446|consen 122 KTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALAN------GSELIKLYDLRSFDKGPFT-------TFSITDND 186 (311)
T ss_pred CeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEec------CCCeEEEEEecccCCCCce-------eEccCCCC
Confidence 9999999998777766643 3445678999999999887 4559999998863 11110 11100011
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEE-cCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNI-FGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~-~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
........++++|+.|+.++..+.+++.+ ++.-...++........ -....+|+||+++++.+.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~---------------~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN---------------LPLSATFTPDSKFVLSGS 251 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC---------------cceeEEECCCCcEEEEec
Confidence 11222344678999999999999988775 33334444432221110 013679999999999887
Q ss_pred ecCccccccCCCCCCcEEEEEeeccc
Q 004298 241 SGQLSQEELGGHGMHGLHCLVLDTSI 266 (763)
Q Consensus 241 ~d~l~~~~~~~~~~~~l~~~~ld~~~ 266 (763)
.|+ .++++.+++..
T Consensus 252 ~dg------------~i~vw~~~tg~ 265 (311)
T KOG1446|consen 252 DDG------------TIHVWNLETGK 265 (311)
T ss_pred CCC------------cEEEEEcCCCc
Confidence 766 78888776653
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.27 E-value=7.5e-11 Score=129.63 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=117.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS-----KILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.+++.||+++++|+++... .|++|+. +|..+..+. |.-.|+.++|||||++|++.+.|.++.+|...+..
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 5799999999999999987543 5889998 787777665 77889999999999999999999999999975332
Q ss_pred ----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CCCCCcccCCcccccCCcccccceecc
Q 004298 95 ----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 95 ----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
.....+.|...|..+.|+|++.+++++| .|+++++|...... ..+.. .. ...+ ...+..+.+.
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~~~d~~i~~-~a-~~~~----~~aVTAv~~~ 673 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPDLRDKYISR-FA-CLKF----SLAVTAVAYL 673 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccCchhhhhhh-hc-hhcc----CCceeeEEee
Confidence 1233678999999999999999999999 99999999654320 00100 00 0000 0111112222
Q ss_pred ---cCCCeeEEEEEcCCCcEEEEEcC
Q 004298 170 ---SHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 170 ---~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
......++++|...|.|.+|...
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccccccccceEEEEecccEEEEEecc
Confidence 23455689999999999999744
No 131
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.26 E-value=7.7e-11 Score=117.52 Aligned_cols=115 Identities=16% Similarity=0.338 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT--EDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~~ 97 (763)
.|.+++|+|+++.+|+.. .++.|.+|+++++++..+. ...++.+.|+|+|++|++|+. .|.|.+||+++.+.+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 399999999999887654 5678999999999998886 456789999999999999874 4679999999999988
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+.. | ..++.+.|+|+|++++++......-.|..+++|+...
T Consensus 140 ~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 140 TFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 774 3 3578999999999999876332233577888888754
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.5e-10 Score=131.12 Aligned_cols=181 Identities=15% Similarity=0.215 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+.+++++-+|.++|.|+.|-.|++-+. +......+ .|..+|.++.|+|.|++||+.+-||.|++||++++.+.+++.+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence 889999999999999999999999998 44444444 5889999999999999999999999999999999998877754
Q ss_pred c--------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCcccccceecccC
Q 004298 102 H--------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 102 h--------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
- ...+..++|+|++..++..+ .|+.|++++...-. ..+.. . .. ...+..+. ++
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------~d~~Vkvy~r~~we~~f~Lr~----~--~~---ss~~~~~~--ws 241 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPP------VDNTVKVYSRKGWELQFKLRD----K--LS---SSKFSDLQ--WS 241 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeec------cCCeEEEEccCCceeheeecc----c--cc---ccceEEEE--Ec
Confidence 2 24567789999966555544 58999998766421 11110 0 00 01122333 45
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
|+|.+||+++-||.|.+|+.+....+.. ...|.+++|-|+...+-+....
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~~~~~---------------------~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHERHEF---------------------KRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccchhccc---------------------cceeEEEecCCCCCeeEEEeec
Confidence 7799999999999999999776222111 1247788999988877766543
No 133
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=6.1e-11 Score=129.45 Aligned_cols=157 Identities=22% Similarity=0.223 Sum_probs=126.2
Q ss_pred CCCeEEEEE-cCCCCEEEEEeCCCeEEEEEccCc---eEEEec----------CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 21 ASQIKIAEW-NPEKDLLAMATEDSKILLHRFNWQ---RLWTIS----------PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 21 ~~~V~~l~~-sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~----------~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.+.|+|++. -++..++|+|+-|+.|.+|+++.. .+..++ +...|.+++.++.|..|++|+..+.++
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 356999999 888999999999999999999532 333322 446799999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+||.++++-+.++++|+..|.++..++||+.+.++| .|++|++||+..+.... ....|.. .. -
T Consensus 197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s------SDgtIrlWdLgqQrCl~--T~~vH~e-------~V--W 259 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS------SDGTIRLWDLGQQRCLA--TYIVHKE-------GV--W 259 (735)
T ss_pred EeccccccceeeeeccccceEEEEEcCCCCeEeecC------CCceEEeeeccccceee--eEEeccC-------ce--E
Confidence 999999999999999999999999999999999998 89999999998742211 1111111 11 1
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
.+..++.+..+.+|+.||.|..-+...+
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCc
Confidence 2334588899999999999998876664
No 134
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.25 E-value=1.2e-10 Score=113.95 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|+.|..+-||-..+.+.+++.|++|++|+. ++.++.++..+..|+++..++||++|.++. .+.|+.||..+-..+..+
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeec
Confidence 577999999998888888899999999999 899999999999999999999999887775 467999999998888887
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
+. ...|.+.+.+|+...++.|+ +|..+.-||..+.. .+.....++-+.+ .+..++|++.+.++
T Consensus 222 k~-P~nV~SASL~P~k~~fVaGg------ed~~~~kfDy~Tge-Ei~~~nkgh~gpV---------hcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 222 KM-PCNVESASLHPKKEFFVAGG------EDFKVYKFDYNTGE-EIGSYNKGHFGPV---------HCVRFSPDGELYAS 284 (334)
T ss_pred cC-ccccccccccCCCceEEecC------cceEEEEEeccCCc-eeeecccCCCCce---------EEEEECCCCceeec
Confidence 65 67899999999998888888 88888888877631 1111234554444 44557799999999
Q ss_pred EcCCCcEEEEEcC
Q 004298 180 GDKDGSICFNIFG 192 (763)
Q Consensus 180 gs~DG~I~lw~~~ 192 (763)
|+.||+|++|...
T Consensus 285 GSEDGTirlWQt~ 297 (334)
T KOG0278|consen 285 GSEDGTIRLWQTT 297 (334)
T ss_pred cCCCceEEEEEec
Confidence 9999999999743
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.24 E-value=2e-10 Score=125.20 Aligned_cols=167 Identities=21% Similarity=0.229 Sum_probs=109.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe----cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeE--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI----SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKL-- 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~----~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~-- 95 (763)
.|..++|-|...+|++++.|.++++|++++.++-.. -|...|.++||.| |-..|++|+.||.|.|||++....
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 499999999667899999999999999966555433 3788999999999 455889999999999999863220
Q ss_pred -------------------------EEEecccCCceeE---EEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCC
Q 004298 96 -------------------------LRSLKSHTVAVVC---LNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 96 -------------------------~~~l~~h~~~V~~---l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~ 147 (763)
++.-+.|...|.. +.+..|...+++++. .|+.+++||++........
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-----~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA-----ADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC-----CCcceEEEeeccccccccc
Confidence 0111123344544 555567777887761 4999999999874322111
Q ss_pred cccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 148 LVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 148 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
...+...+-..............+..|.+|.+...|+.|++|+....
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 11111111111112222233334455666666666999999976554
No 136
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.24 E-value=2.2e-10 Score=130.14 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=141.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEE-ec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWT-IS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~-~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.+.+..|+ .+.+++++.+.+|.+|+. ++..+.. +. |.+.|.++++..-+.++++|+.|.++++||..+|++.+.+
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l 287 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL 287 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence 47778888 678889999999999999 6766666 44 8889999999887889999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|.+.|.++...+ ..+++|+ .|.++++|+.... .......+|...+ .++. -+++++++
T Consensus 288 ~gh~stv~~~~~~~--~~~~sgs------~D~tVkVW~v~n~--~~l~l~~~h~~~V-------~~v~----~~~~~lvs 346 (537)
T KOG0274|consen 288 QGHTSSVRCLTIDP--FLLVSGS------RDNTVKVWDVTNG--ACLNLLRGHTGPV-------NCVQ----LDEPLLVS 346 (537)
T ss_pred cCCCceEEEEEccC--ceEeecc------CCceEEEEeccCc--ceEEEeccccccE-------EEEE----ecCCEEEE
Confidence 99999999998764 4556677 8999999999853 2222222343333 2222 23689999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEE
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHC 259 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~ 259 (763)
|+.||+|.+|++..+..-. +++.+.+.|.++.+.+. .+++.++.|. .+..
T Consensus 347 gs~d~~v~VW~~~~~~cl~-----------------sl~gH~~~V~sl~~~~~-~~~~Sgs~D~------------~Ikv 396 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLK-----------------SLSGHTGRVYSLIVDSE-NRLLSGSLDT------------TIKV 396 (537)
T ss_pred EecCceEEEEEhhhceeee-----------------eecCCcceEEEEEecCc-ceEEeeeecc------------ceEe
Confidence 9999999999976443221 12223356777766654 6676666554 6777
Q ss_pred EEeecc
Q 004298 260 LVLDTS 265 (763)
Q Consensus 260 ~~ld~~ 265 (763)
+.+++.
T Consensus 397 Wdl~~~ 402 (537)
T KOG0274|consen 397 WDLRTK 402 (537)
T ss_pred ecCCch
Confidence 776655
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=3.5e-11 Score=126.27 Aligned_cols=158 Identities=19% Similarity=0.268 Sum_probs=115.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+.|..++|+..- +.||+|+.|.+|++|++ .|++...+. |+++|.++.|+| .+.+|.+|+.||+|.+.|.+.....
T Consensus 243 Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 243 TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred hHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc
Confidence 3457889999754 88999999999999999 788887777 899999999999 6789999999999999999843222
Q ss_pred EEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...-...+.|-.+.|.|..... .++. +||+++.+|.+..-..+.. ...|.. .+..++... ..-+
T Consensus 323 ~~~wk~~g~VEkv~w~~~se~~f~~~t------ddG~v~~~D~R~~~~~vwt-~~AHd~-------~ISgl~~n~-~~p~ 387 (463)
T KOG0270|consen 323 GKEWKFDGEVEKVAWDPHSENSFFVST------DDGTVYYFDIRNPGKPVWT-LKAHDD-------EISGLSVNI-QTPG 387 (463)
T ss_pred CceEEeccceEEEEecCCCceeEEEec------CCceEEeeecCCCCCceeE-EEeccC-------CcceEEecC-CCCc
Confidence 2222236789999999987543 3333 7999999999975322211 112221 122232222 3336
Q ss_pred EEEEEcCCCcEEEEEcCc
Q 004298 176 ILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~ 193 (763)
+|++++.|+.+++|.+..
T Consensus 388 ~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ceeeccccceEEEEeecC
Confidence 899999999999998654
No 138
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.23 E-value=1.2e-10 Score=128.06 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE---ec-CCCcEEE-EEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT---IS-PGKSVTS-LCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~---~~-~~~~V~~-l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|..++..+ +-.+++++.||++++|.-.++.... +. |.+.|.+ +++-+ |+-.+.+|+.|++|.+|...++..+
T Consensus 16 DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 16 DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 477777664 4478889999999999984433222 22 5566666 88887 5557999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
..+++|++.|+|++-..++. +++|| +|.++++|....-...+.+|
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgS------WD~TakvW~~~~l~~~l~gH 139 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGS------WDSTAKVWRIGELVYSLQGH 139 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecc------cccceEEecchhhhcccCCc
Confidence 99999999999999888777 88898 99999999776543444443
No 139
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=9.7e-11 Score=122.65 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=122.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEE-EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLW-TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~-~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
..++|+++|.++|+++.||+++||+. +-+.+. ...|.++|.++.|+|||++|++-+.| ..+||++++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 67999999999999999999999995 433333 33588999999999999999999999 999999999976665542
Q ss_pred -cCCceeEEEeecCC-----CceeccCCCCCcccCCceeecCCCCC----CCCCCCcccCCcccccCCcccccceecccC
Q 004298 102 -HTVAVVCLNWEEDA-----QPSKNDFGNIPTYEDRTSRFFPPAPR----IPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 102 -h~~~V~~l~ws~~~-----~~l~s~s~~~~~~~d~~i~~wd~~~~----~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+.....+.|+.++ ...+... .-+.++.|+.... .-+.......+. .+.. ...+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~--------siSs--l~VS 290 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQF------PGGGVRLCDISLWSGSNFLRLRKKIKRFK--------SISS--LAVS 290 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecC------CCCceeEEEeeeeccccccchhhhhhccC--------ccee--EEEc
Confidence 23456777887766 2222222 2334444332211 001111111111 1222 2356
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+++++++.|+.||.|.+++.....+-.+- . +.+...|+.+.|+||-+++..++.+
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k--------------~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSLQRLQYV--K--------------EAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred CCCcEEEEeccCCcEEEEEeceeeeeEee--h--------------hhheeeeeeEEEcCCcCcccccccC
Confidence 88899999999999999874443332221 0 1222458999999999998876544
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.23 E-value=1.9e-10 Score=116.35 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc--eEEEec-C-----CCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF--NWQ--RLWTIS-P-----GKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~--~v~~~~-~-----~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~ 92 (763)
-.+++|+|||..|.. +....|++|++ +|. +++... + .+.+.|++|+| +.+.+|+|+....+-|+.-..
T Consensus 161 AhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 468999999999875 45788999998 343 233222 3 35689999999 778999999999999999888
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+..+..+-+|.+.|+.+.|.++|..+.+|+ -.+..|..||++.....+..... +. ++.-+++.+...+
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGa-----Rk~dkIl~WDiR~~~~pv~~L~r-hv------~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-----RKDDKILCWDIRYSRDPVYALER-HV------GDTNQRILFDLDP 307 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccc-----cCCCeEEEEeehhccchhhhhhh-hc------cCccceEEEecCC
Confidence 999999999999999999999999998887 26888999999875433332111 11 1123456677889
Q ss_pred CeeEEEEEcCCCcEEEEEcCc
Q 004298 173 RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+++|++|+.||.|++|+...
T Consensus 308 ~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 308 KGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCceeeccCCCccEEEEecCC
Confidence 999999999999999998654
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.22 E-value=5e-10 Score=125.56 Aligned_cols=186 Identities=12% Similarity=0.051 Sum_probs=144.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..+++++.++.|++.+.|+..|.|-+|++ .|-...++ .|+++|++++...-++.+++++.+|.++.||..++..+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 45899999999999999999999999999 44444444 48899999999998999999999999999999988888
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
++++. ...++++..+.....++.+. +|-.|+++|..+. +......||..-+ ...+++++++.
T Consensus 529 ~~l~l-~~~~~~iv~hr~s~l~a~~~------ddf~I~vvD~~t~--kvvR~f~gh~nri---------td~~FS~DgrW 590 (910)
T KOG1539|consen 529 KSLRL-GSSITGIVYHRVSDLLAIAL------DDFSIRVVDVVTR--KVVREFWGHGNRI---------TDMTFSPDGRW 590 (910)
T ss_pred eeecc-CCCcceeeeeehhhhhhhhc------CceeEEEEEchhh--hhhHHhhccccce---------eeeEeCCCCcE
Confidence 88865 57889999988877777766 7889999998752 2222233443322 23446789999
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|++++.|++|++|+.-+-.. ++ .-+.+.++..++|||+|.+|+++..|.
T Consensus 591 lisasmD~tIr~wDlpt~~l--ID----------------~~~vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTL--ID----------------GLLVDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred EEEeecCCcEEEEeccCcce--ee----------------eEecCCcceeeEECCCCCEEEEEEecC
Confidence 99999999999998443211 11 112345678999999999999998875
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.21 E-value=1.2e-10 Score=126.90 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
-|..++|-|||..++.+. +..+.+|+. +|..+-+++ |.+.|.|++|+.||+.+|+|+.|..|.+|+..-. -+-++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-
Confidence 389999999998887765 456899999 676777776 8899999999999999999999999999996522 22233
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.|.+.|.||.|+|-...+++++ -...-+|....+.-.- + ..+.....+++..++.+++.|
T Consensus 91 SH~D~IQCMsFNP~~h~LasCs-------LsdFglWS~~qK~V~K------~-------kss~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCS-------LSDFGLWSPEQKSVSK------H-------KSSSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcc-------hhhccccChhhhhHHh------h-------hhheeEEEeeecCCCcEEEEe
Confidence 6899999999999999999987 2334466655431110 0 011122345567888999999
Q ss_pred cCCCcEEEEEcCceeeeeee
Q 004298 181 DKDGSICFNIFGIFPIGKIN 200 (763)
Q Consensus 181 s~DG~I~lw~~~~~~ig~~~ 200 (763)
..||+|.+-.-..-+-+.++
T Consensus 151 ~~nGTIsiRNk~gEek~~I~ 170 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEKVKIE 170 (1081)
T ss_pred ccCceEEeecCCCCcceEEe
Confidence 99999998854333334443
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.20 E-value=8.9e-10 Score=117.23 Aligned_cols=198 Identities=19% Similarity=0.249 Sum_probs=128.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l 99 (763)
.++.+++|+|.| .+|.|+..|...|.+...+.+.++. .+.++++++|+|||.+||+|+.|+.|+||.+.. |......
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 348888888888 8888888888888888666665554 467899999999999999999999999999864 4443332
Q ss_pred c-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-------CCcccc-cCCcccccceeccc
Q 004298 100 K-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-------GDTGFT-DDSEDSFRELANSS 170 (763)
Q Consensus 100 ~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-------~~~~~~-~~~~~~~~~~~~~~ 170 (763)
. .|.++|+++.|++|++++.+-+ .|-.+.+|.... ......... ...+|- .+.....+-...+.
T Consensus 487 ~k~~gs~ithLDwS~Ds~~~~~~S------~d~eiLyW~~~~-~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~r 559 (626)
T KOG2106|consen 487 GKCSGSPITHLDWSSDSQFLVSNS------GDYEILYWKPSE-CKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVAR 559 (626)
T ss_pred eeecCceeEEeeecCCCceEEecc------CceEEEEEcccc-CcccceecceeeeeeEEEEEEEEecccCCchHHHhhh
Confidence 2 2348999999999999999887 788899993321 111111000 000110 00011111111223
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+...+++++|+..|+|+++-|. +.+.... .+ .+..+.+-|.+++|+.+-++++....
T Consensus 560 s~~~~~lA~gdd~g~v~lf~yP---c~s~rA~---~h--------e~~ghs~~vt~V~Fl~~d~~li~tg~ 616 (626)
T KOG2106|consen 560 SHCEKLLASGDDFGKVHLFSYP---CSSPRAP---SH--------EYGGHSSHVTNVAFLCKDSHLISTGK 616 (626)
T ss_pred hhhhhhhhccccCceEEEEccc---cCCCccc---ce--------eeccccceeEEEEEeeCCceEEecCC
Confidence 4566899999999999999743 3222100 00 01112234788999988777776653
No 144
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.20 E-value=3.5e-10 Score=124.52 Aligned_cols=202 Identities=22% Similarity=0.246 Sum_probs=143.5
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 27 AEWNP-EKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 27 l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
+++-+ ++-.+.+|+.|+.|.+|.. ...++..++ |...|.|+....++. +++|+.|.++++|-. +++...+.+|+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~ 140 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHT 140 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcc
Confidence 55554 3445888999999999999 666777776 888999999888888 999999999999974 67777799999
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKD 183 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~D 183 (763)
..|+++..-|.+ .++||+ .|++|++|.-...+.. +++|+..+ +.+..- +. .-+++++.|
T Consensus 141 asVWAv~~l~e~-~~vTgs------aDKtIklWk~~~~l~t----f~gHtD~V-------RgL~vl--~~-~~flScsND 199 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGS------ADKTIKLWKGGTLLKT----FSGHTDCV-------RGLAVL--DD-SHFLSCSND 199 (745)
T ss_pred hheeeeeecCCC-cEEecc------CcceeeeccCCchhhh----hccchhhe-------eeeEEe--cC-CCeEeecCC
Confidence 999999998888 667777 7999999987544433 44555444 111111 22 248899999
Q ss_pred CcEEEEEcCceeeeeeeec----------ccccccccCCCCCceeeecc------------ceeeEEecCCCCEEEEEee
Q 004298 184 GSICFNIFGIFPIGKINIH----------KFHVAIPNADEQGTCRLLNA------------SIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 184 G~I~lw~~~~~~ig~~~i~----------~~~~~~~s~~~~~~~~l~~~------------~I~~v~~SpDg~~Llv~~~ 241 (763)
|.|++|+.+.-.+-...-| .....+.+.+.|+++|+|.. +|.++++=++|. ++++++
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred ceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEecc
Confidence 9999998643222211111 11223457889999999972 566665555544 667777
Q ss_pred cCccccccCCCCCCcEEEEEeecc
Q 004298 242 GQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 242 d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
|+ .++++..+-.
T Consensus 279 DG------------~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DG------------RVRVFTVDKD 290 (745)
T ss_pred Cc------------eEEEEEeccc
Confidence 76 6777766643
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=3.4e-11 Score=132.79 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=140.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...|.++..-..+..+++|+.|..+-+|... -..+..+ -|...|.++.|+++..+|+.|..+|+|++||++.++.+++
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt 107 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT 107 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh
Confidence 3447777776677899999999999888872 2233333 3788999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...+..+.|+|.+.+.++|+ .|..+++||.+.+... ....++...+ + ...+.|++.+++
T Consensus 108 Ltgh~~~~~sv~f~P~~~~~a~gS------tdtd~~iwD~Rk~Gc~--~~~~s~~~vv-------~--~l~lsP~Gr~v~ 170 (825)
T KOG0267|consen 108 LTGHLLNITSVDFHPYGEFFASGS------TDTDLKIWDIRKKGCS--HTYKSHTRVV-------D--VLRLSPDGRWVA 170 (825)
T ss_pred hhccccCcceeeeccceEEecccc------ccccceehhhhccCce--eeecCCccee-------E--EEeecCCCceee
Confidence 999999999999999999999998 8999999999854221 1122233322 1 123568889999
Q ss_pred EEcCCCcEEEEEcC------ceeeeeeee-----cccccccccCCCCCceeeeccc
Q 004298 179 SGDKDGSICFNIFG------IFPIGKINI-----HKFHVAIPNADEQGTCRLLNAS 223 (763)
Q Consensus 179 sgs~DG~I~lw~~~------~~~ig~~~i-----~~~~~~~~s~~~~~~~~l~~~~ 223 (763)
+|++|.++++|+.. .|+-+...+ |....-..+++.++++++|+..
T Consensus 171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999752 123222222 2222223578889999999865
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=3.9e-10 Score=119.22 Aligned_cols=152 Identities=19% Similarity=0.194 Sum_probs=115.1
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+.|.|++-+|+|.+++.|...|.+++|.+.+|+.+..+..|-..|+|+.|+.||.++++|+ .||.+.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs------kDg~V~vW~l~~ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS------KDGAVLVWLLTD 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC------CCccEEEEEEEe
Confidence 35699999999999999999999999999999999999999999999999999999999999 999999996543
Q ss_pred CCCCC------C-CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCC
Q 004298 141 RIPQM------P-GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADE 213 (763)
Q Consensus 141 ~~~~l------~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~ 213 (763)
-.... | ...+.|+ -++..+...+.+....+++++.|.++++|+...- ..-..
T Consensus 155 lv~a~~~~~~~p~~~f~~Ht-------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlt----------- 213 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHT-------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLT----------- 213 (476)
T ss_pred ecccccCCCccceeeeccCc-------ceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEE-----------
Confidence 11111 1 1122332 2333444445555578999999999999985432 21000
Q ss_pred CCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 214 QGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 214 ~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
-..+.++.+++++|-.+.++++++++
T Consensus 214 ----i~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 214 ----ITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred ----EecCCcceeEEEcccccEEEecCCcc
Confidence 01234678899999999999988876
No 147
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.19 E-value=6.1e-10 Score=111.92 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCC--EEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
++|.+++|+.+|.++++|+.|+++++|++ .+|...--.|...|.++.|-+... .|++|+.|++++.||.+....+.+
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 44999999999999999999999999999 554444445999999999998665 899999999999999998777766
Q ss_pred ecccCC------------------------------------------ceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 99 LKSHTV------------------------------------------AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 99 l~~h~~------------------------------------------~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
+.. .. .+.|++..++....+-|+ -.|.+-+.
T Consensus 153 ~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs------iEGrv~iq 225 (347)
T KOG0647|consen 153 LQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS------IEGRVAIQ 225 (347)
T ss_pred eec-cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee------ecceEEEE
Confidence 542 12 244455444444444444 34544444
Q ss_pred CCCCCCCCCCCcccCCccc--ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 137 PPAPRIPQMPGLVSGDTGF--TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 137 d~~~~~~~l~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+....++-.-.+..|... ..+.-..++. .++++....|++++.||+..+|+-+.
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs--i~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS--IAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecc--eEeecccceEEEecCCceEEEecchh
Confidence 3333211111111112110 1000112223 34567778999999999999998554
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.7e-09 Score=107.53 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-----CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc----
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-----PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE---- 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-----~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve---- 91 (763)
|+++.|++.|+.+|+|+.|++|+||+. ...--|... |++.|..+.|.+ -|+.+|+++.|+++.||.-.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 999999999999999999999999996 445555553 788999999977 79999999999999999742
Q ss_pred C--C-e--EEEEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCC
Q 004298 92 N--G-K--LLRSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ~--g-~--~~~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. | + ...++....+.|+.+.|.|.. -.+++++ .||.+|+|+...
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~------aDG~lRIYEA~d 145 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS------ADGILRIYEAPD 145 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEec------cCcEEEEEecCC
Confidence 1 1 1 123344556899999999964 4667777 899999997764
No 149
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=122.86 Aligned_cols=214 Identities=18% Similarity=0.162 Sum_probs=139.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccC----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVEN---- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~---- 92 (763)
+=|.+++|+.+|.+||+|++|-.+.||+. ..+.+..+. |...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~ 130 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEG 130 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccc
Confidence 44999999999999999999999999998 566666666 567899999999 556889999999999999874
Q ss_pred ------CeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCc--ccc
Q 004298 93 ------GKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSE--DSF 163 (763)
Q Consensus 93 ------g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~--~~~ 163 (763)
.+..+.+..|...|..|+-.|++ ..+-+++ +||+++-+|++.+....+... .+.....-.. -..
T Consensus 131 ~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas------EDGtirQyDiREph~c~p~~~-~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 131 GMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS------EDGTIRQYDIREPHVCNPDED-CPSILVNYNPQLIEL 203 (758)
T ss_pred ccccCccchhhhhhhhhhhhhheecCCCCCceEEEec------CCcceeeecccCCccCCcccc-ccHHHHHhchhhhee
Confidence 23345566788999999999998 4666777 999999999986422111110 0000000000 111
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCce-e-eeeeeecccccc----------cc-cCCCCCceeeeccceeeEEec
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIF-P-IGKINIHKFHVA----------IP-NADEQGTCRLLNASIYKVALS 230 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~-ig~~~i~~~~~~----------~~-s~~~~~~~~l~~~~I~~v~~S 230 (763)
+++...+ .+-.+|++|+.|-..++|+.+.. + ...--.+..+.+ .. .....+........++-++|+
T Consensus 204 k~ltisp-~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 204 KCLTISP-SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeecC-CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 2222222 34579999999999999983321 1 000000000000 00 011223233333346778999
Q ss_pred CCCCEEEEEeecC
Q 004298 231 KDLFHLTVLCSGQ 243 (763)
Q Consensus 231 pDg~~Llv~~~d~ 243 (763)
|+|.-|++.-.+.
T Consensus 283 pNGtElLvs~~gE 295 (758)
T KOG1310|consen 283 PNGTELLVSWGGE 295 (758)
T ss_pred CCCcEEEEeeCCe
Confidence 9999999876544
No 150
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=7.9e-10 Score=116.66 Aligned_cols=225 Identities=12% Similarity=0.077 Sum_probs=153.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE---EEec-CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEcc
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL---WTIS-PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVE 91 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~-~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve 91 (763)
..|.-++|+++.|+|...++.+++.|+.+++|.++|+.- -.+. .+-+|.+.+|.|+|+ .+++++.-...+.||++
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 344447799999999999999999999999999988743 3333 456899999999999 89999999999999999
Q ss_pred CCeEEEE--ecccC-CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec
Q 004298 92 NGKLLRS--LKSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 92 ~g~~~~~--l~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~ 168 (763)
+++.... ..++. ..+.....++++++++..+ ..|.|.++...++. +..... .+..+..+.+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G------~~G~I~lLhakT~e--li~s~K--------ieG~v~~~~f 352 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG------NNGHIHLLHAKTKE--LITSFK--------IEGVVSDFTF 352 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcc------cCceEEeehhhhhh--hhheee--------eccEEeeEEE
Confidence 8876432 33433 3567788899999999887 78888888766531 111000 0112223333
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccc
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEE 248 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~ 248 (763)
. .++..|++.+.+|.|.+|+.+...+-..-. .++.+ .-+++|.|++|.++++++..++
T Consensus 353 s--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-----------D~G~v-----~gts~~~S~ng~ylA~GS~~Gi---- 410 (514)
T KOG2055|consen 353 S--SDSKELLASGGTGEVYVWNLRQNSCLHRFV-----------DDGSV-----HGTSLCISLNGSYLATGSDSGI---- 410 (514)
T ss_pred e--cCCcEEEEEcCCceEEEEecCCcceEEEEe-----------ecCcc-----ceeeeeecCCCceEEeccCcce----
Confidence 3 455777777889999999877653222111 11111 1246788999998888776553
Q ss_pred cCCCCCCcEEEEEeeccccccCchHHHHHHHHHhhHHHH
Q 004298 249 LGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDL 287 (763)
Q Consensus 249 ~~~~~~~~l~~~~ld~~~l~~~~~~l~~la~~~s~i~~l 287 (763)
+-++..+.-+-+..++.+..+....+.|.+|
T Consensus 411 --------VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 411 --------VNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred --------EEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 3344455555566666676666666666555
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.17 E-value=3.2e-10 Score=119.46 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=131.9
Q ss_pred CCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEccCc-----eEEE-ecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEE
Q 004298 18 KPVASQIKIAEWNPEK--DLLAMATEDSKILLHRFNWQ-----RLWT-ISPGKSVTSLCWRP-DGKAIAVGLEDGTITLH 88 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l~~~-----~v~~-~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lw 88 (763)
+..+.+|++++|+|.. +++|+|...|+|-+|++.+| .++- ..|+.+|.+|.|+| +-..+.+.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 4555779999999987 47888889999999999422 3333 34888999999999 66789999999999999
Q ss_pred EccCCeE--EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 89 DVENGKL--LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 89 dve~g~~--~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
|++++.. +.+.......+..+.++.....+..+. .-|...+||.+......... .-+ ...+..+
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~------~~G~f~~iD~R~~~s~~~~~-~lh-------~kKI~sv 328 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD------NVGNFNVIDLRTDGSEYENL-RLH-------KKKITSV 328 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEee------cccceEEEEeecCCccchhh-hhh-------hccccee
Confidence 9997543 233322345677788877777666665 45578889888643321110 000 1122223
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+ .+-.+|++++.|++.+||+.+...--.-+ ++.+ -+..+|.++.|||+|..|+..|.|.
T Consensus 329 ~~NP-~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~--------------~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 329 ALNP-VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL--------------PHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred ecCC-CCchheeecccCcceeeeehhhhcCCCCcceecc--------------cccceeeeeEEcCCCCceEeeccCC
Confidence 3222 22358999999999999997653211100 0000 0124688999999998888888765
No 152
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.16 E-value=2e-10 Score=123.07 Aligned_cols=91 Identities=24% Similarity=0.433 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|..++|+|||.+||+++.||.++||+...+.+..+- --+...|++||||||+|++|+.|-.|.||.++.++++..-.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 4889999999999999999999999998777665543 22568999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeec
Q 004298 101 SHTVAVVCLNWEE 113 (763)
Q Consensus 101 ~h~~~V~~l~ws~ 113 (763)
+|.++|+.++|.|
T Consensus 372 GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKSWVSVVAFDP 384 (636)
T ss_pred ccccceeeEeecc
Confidence 9999999999997
No 153
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.2e-10 Score=113.64 Aligned_cols=155 Identities=21% Similarity=0.319 Sum_probs=115.5
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCeEEEEEccCceEEEec-----CCCcEEEEEEccC---C-----------CEEEEEE
Q 004298 22 SQIKIAEWNPEK--DLLAMATEDSKILLHRFNWQRLWTIS-----PGKSVTSLCWRPD---G-----------KAIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l~~~~v~~~~-----~~~~V~~l~wspD---G-----------~~Lasg~ 80 (763)
+.|++++|-|.+ -+||+++.||.|.|.+.+..-.|... |.-.|++++|.|- | +.|++|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 459999999965 78999999999999998555444432 6677999999995 6 7799999
Q ss_pred cCCcEEEEEccCCe--EEEEecccCCceeEEEeecCC----CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcc
Q 004298 81 EDGTITLHDVENGK--LLRSLKSHTVAVVCLNWEEDA----QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTG 154 (763)
Q Consensus 81 ~Dg~V~lwdve~g~--~~~~l~~h~~~V~~l~ws~~~----~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~ 154 (763)
.|+.|+||+..++. .-+++.+|.+.|..++|.|.. ..+++++ .||++.+|.......+-....- ..
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S------qDg~viIwt~~~e~e~wk~tll--~~ 254 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS------QDGTVIIWTKDEEYEPWKKTLL--EE 254 (299)
T ss_pred CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec------CCCcEEEEEecCccCccccccc--cc
Confidence 99999999988764 335588999999999999975 4688898 9999999976632211111000 00
Q ss_pred cccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 155 FTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
|. ..+..+ +++..+++|++++.|++|.+|.
T Consensus 255 f~----~~~w~v--SWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 255 FP----DVVWRV--SWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CC----cceEEE--EEeccccEEEEecCCcEEEEEE
Confidence 11 112223 3456788999999999999995
No 154
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.16 E-value=1e-09 Score=109.53 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce-EEEec------CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR-LWTIS------PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~-v~~~~------~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve 91 (763)
++|.|+.|+|+++.+|+.. |..|.+|++ ++.. +..+. +....++-+|+| ||..+++. .|+++..||++
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEcc
Confidence 4799999999999998766 888999999 4444 33332 234678899999 88888876 58999999999
Q ss_pred CCeEEEEec-ccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 92 NGKLLRSLK-SHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 92 ~g~~~~~l~-~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+.+....+. .|...|..+.|+|+-+ ++++|+ +|+.+++||.+....++.. ..+|.-++ ..+.+.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g------DdgyvriWD~R~tk~pv~e-l~~HsHWv-------W~VRfn 267 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG------DDGYVRIWDTRKTKFPVQE-LPGHSHWV-------WAVRFN 267 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcC------CCccEEEEeccCCCccccc-cCCCceEE-------EEEEec
Confidence 877766664 6778899999999986 567887 8999999999875333221 22333322 001111
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeee-eeec----ccccccc----cCCCCCcee---eeccceeeEEecCCCCEEE
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGK-INIH----KFHVAIP----NADEQGTCR---LLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-~~i~----~~~~~~~----s~~~~~~~~---l~~~~I~~v~~SpDg~~Ll 237 (763)
+ ....++++|+.|..|.+|...+..-.. +... ..+.... -.-.++.+. -+..+|++++||.-.-.++
T Consensus 268 ~-~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 268 P-EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred C-ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 1 122578999999999999755432111 1000 0000000 000122222 2336899999998767776
Q ss_pred EEee
Q 004298 238 VLCS 241 (763)
Q Consensus 238 v~~~ 241 (763)
+..+
T Consensus 347 ASLS 350 (370)
T KOG1007|consen 347 ASLS 350 (370)
T ss_pred EEec
Confidence 6543
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.15 E-value=2.1e-10 Score=124.39 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=133.8
Q ss_pred CCCCCeEEEEEcCCCCEEEE--EeCCCeEEEEEcc--Cc----eEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAM--ATEDSKILLHRFN--WQ----RLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~--~s~Dg~V~v~~l~--~~----~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwd 89 (763)
.+|+.... ||.+...+|+ ++..|.|-||.++ |. .+-.+.+|..|+.+.|.| |.+.||+|++||.|+||.
T Consensus 579 ~~PgEsnG--fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 579 RLPGESNG--FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred cCCCccCc--eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 34444443 4555566664 5667999999983 22 334455788999999999 999999999999999999
Q ss_pred ccCCe-------EEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 90 VENGK-------LLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 90 ve~g~-------~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
+..+. .-..++.|...|+++.|+|-- ..+++++ .|-+|++||+... .......+|+.-+
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------yd~Ti~lWDl~~~--~~~~~l~gHtdqI----- 723 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------YDSTIELWDLANA--KLYSRLVGHTDQI----- 723 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------ccceeeeeehhhh--hhhheeccCcCce-----
Confidence 87543 345678899999999999954 4667776 7999999999863 2223344555444
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+..++++++..+++.+.||+|++|.-.+- ..++....++..+. --.+.|..||+++++.+-
T Consensus 724 ----f~~AWSpdGr~~AtVcKDg~~rVy~Prs~---e~pv~Eg~gpvgtR------------gARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 724 ----FGIAWSPDGRRIATVCKDGTLRVYEPRSR---EQPVYEGKGPVGTR------------GARILWACDGRIVIVVGF 784 (1012)
T ss_pred ----eEEEECCCCcceeeeecCceEEEeCCCCC---CCccccCCCCccCc------------ceeEEEEecCcEEEEecc
Confidence 45567789999999999999999964332 22222222221111 125678889999988876
Q ss_pred cC
Q 004298 242 GQ 243 (763)
Q Consensus 242 d~ 243 (763)
++
T Consensus 785 dk 786 (1012)
T KOG1445|consen 785 DK 786 (1012)
T ss_pred cc
Confidence 65
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.12 E-value=1.3e-09 Score=118.94 Aligned_cols=211 Identities=15% Similarity=0.111 Sum_probs=136.8
Q ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEEccCce-------EE-EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 25 KIAEWNP---EKDLLAMATEDSKILLHRFNWQR-------LW-TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 25 ~~l~~sP---~~~lLA~~s~Dg~V~v~~l~~~~-------v~-~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.+..|++ ...+||.+.+||.|.+++...+. +. -+.|...|..+.|-|....|++++.|.+++.||++.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3456655 23789999999999999973321 11 2237888999999995558899999999999999999
Q ss_pred eEEEE--ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCC-----cccCCcc---cc------
Q 004298 94 KLLRS--LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-----LVSGDTG---FT------ 156 (763)
Q Consensus 94 ~~~~~--l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-----~~s~~~~---~~------ 156 (763)
+++.. +.+|...|.+++|.|.+. .+++|+ .|+.+.+||.+........ ....+.. ..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg------RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG------RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeecc------CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 98876 889999999999999876 567777 8999999998753200000 0000000 00
Q ss_pred -----cCCcccccceecccCCCeeEEEEEcC-CCcEEEEEcCcee----eeeeeecccccccccCCCCCceeeeccceee
Q 004298 157 -----DDSEDSFRELANSSHQRFSILCSGDK-DGSICFNIFGIFP----IGKINIHKFHVAIPNADEQGTCRLLNASIYK 226 (763)
Q Consensus 157 -----~~~~~~~~~~~~~~~~~~~~L~sgs~-DG~I~lw~~~~~~----ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~ 226 (763)
.........+......+.+.||+++. ||.|++||+.... -+.......+.+ .... ..+.+
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-----skrs-----~G~~n 276 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-----SKRS-----VGQVN 276 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc-----ccce-----eeeEE
Confidence 00000011111223345567888887 9999999876532 111211111111 1111 13556
Q ss_pred EEecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 227 VALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
+.....|.+|++.|.|+ .||++.+-
T Consensus 277 L~lDssGt~L~AsCtD~------------sIy~ynm~ 301 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDN------------SIYFYNMR 301 (720)
T ss_pred EEecCCCCeEEEEecCC------------cEEEEecc
Confidence 77778889999999987 77777654
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.12 E-value=5.1e-10 Score=118.63 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=136.9
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCeEEEEEccCc----eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDL-LAMATEDSKILLHRFNWQ----RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~----~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++..+.|+....+ +|+.+.|..|.+|+-+|+ ++.....++.-.|++......++++|+..|.|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 3999999987653 334567788999999877 12222234433444444444899999999999999999666777
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.++.|++.|+++.++....++++++ ..|.|.+....++....+ |..+....+.-+......+ .+|
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs------~gGdiiih~~~t~~~tt~--------f~~~sgqsvRll~ys~skr-~lL 180 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVS------DGGDIIIHGTKTKQKTTT--------FTIDSGQSVRLLRYSPSKR-FLL 180 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEec------cCCcEEEEecccCccccc--------eecCCCCeEEEeecccccc-eee
Confidence 7899999999999999999999998 778888887765432211 1111122222233333333 578
Q ss_pred EEEcCCCcEEEEEcCc-eeeeee-eecccccc-----------cccCCCCCceeeec-------------cceeeEEecC
Q 004298 178 CSGDKDGSICFNIFGI-FPIGKI-NIHKFHVA-----------IPNADEQGTCRLLN-------------ASIYKVALSK 231 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~-~~ig~~-~i~~~~~~-----------~~s~~~~~~~~l~~-------------~~I~~v~~Sp 231 (763)
.+++.+|.|++|+... .++..+ ..|..|.. +.+.|.|+.+-+++ .+...++|++
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE 260 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC
Confidence 8999999999998543 232221 12222111 12444555555544 5788999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
+|.+|+++...+
T Consensus 261 ~G~~L~aG~s~G 272 (673)
T KOG4378|consen 261 CGTYLCAGNSKG 272 (673)
T ss_pred CceEEEeecCCc
Confidence 999999887755
No 158
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=128.24 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=127.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+|+.++..-.++++++++.+|.+.+|+++.. .+.++.-+.+++++..+.....+|.+.+|-.|+++|+.+.+.++.+.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 45999999999999999999999999999544 45566678889999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
+|.+.|+.++|+|||+++++++ .|++||+||+.+. .+. .++ .....+....++|++++|++.
T Consensus 574 gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~--~lI------D~~----~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTG--TLI------DGL----LVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred ccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCc--cee------eeE----ecCCcceeeEECCCCCEEEEE
Confidence 9999999999999999999998 8999999998762 111 011 011122445577999999999
Q ss_pred cCC-CcEEEEEcC
Q 004298 181 DKD-GSICFNIFG 192 (763)
Q Consensus 181 s~D-G~I~lw~~~ 192 (763)
..| .-|++|...
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 988 679999643
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.11 E-value=8.3e-10 Score=121.39 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc---CCCEEEEEEcCCcEEEEEcc-CCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP---DGKAIAVGLEDGTITLHDVE-NGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp---DG~~Lasg~~Dg~V~lwdve-~g~~ 95 (763)
.++.+++.||+|+.||+|..-|+++||++ +-.....+. |..+|.|+.++. ..++||+|+.|..|+++|+. +-.+
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 45999999999999999999999999999 433333443 889999999986 35799999999999999986 4456
Q ss_pred EEEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCC---CCCC--cccCCcccccCCcccccceec
Q 004298 96 LRSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIP---QMPG--LVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~---~l~~--~~s~~~~~~~~~~~~~~~~~~ 168 (763)
+.++.+|.+.|+++.|..+| ...++++ .|+.+.|- ...+.. ..+. +..+++.. ...
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscG------ADksimFr-~~qk~~~g~~f~r~t~t~~ktTl----------YDm 602 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCG------ADKSIMFR-VNQKASSGRLFPRHTQTLSKTTL----------YDM 602 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEecc------Cchhhhee-hhccccCceeccccccccccceE----------EEe
Confidence 78899999999999999887 4556666 46555432 221110 0000 11111111 122
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecc-------------cccccccCCCCCceeeec-------------
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHK-------------FHVAIPNADEQGTCRLLN------------- 221 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~-------------~~~~~~s~~~~~~~~l~~------------- 221 (763)
..++..++++++..|.+|++|+...-+ ...++-.. -.....++..++++.+++
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 345666788888888888888654321 11111000 000112333445555444
Q ss_pred -cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
-.|+.+.|++|-++|+.++.|+ -|.+|.+-.
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDg------------CIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDG------------CIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccchhheeecCCc------------eEEEEECch
Confidence 2477888999988888887766 677776654
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.09 E-value=1.8e-08 Score=107.51 Aligned_cols=211 Identities=16% Similarity=0.170 Sum_probs=136.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe------cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI------SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~------~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|....|+|...-+.+....+.+..|.+.+.-+.+- ...+.|.|++|.++|. .++|.++|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 467889999987666667789999999865543332 1346799999999996 578999999999999888888
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-C--CCCCCccc-------CCcccc--c-------
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-I--PQMPGLVS-------GDTGFT--D------- 157 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~--~~l~~~~s-------~~~~~~--~------- 157 (763)
+....|++.|.++....+|.++. |+ .|+.+..||-.-+ . .++|.... +...+. +
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllS-Gg------KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLS-GG------KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred eEeeecCCceEEEEEecCccEee-cC------ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 87779999999999999998776 77 8999999983211 1 11111110 000000 0
Q ss_pred -CCccccc---------ceecccCCCeeEEEEEcCCCcEEEEEcCceee---------eeeeecccccccccCCCCC---
Q 004298 158 -DSEDSFR---------ELANSSHQRFSILCSGDKDGSICFNIFGIFPI---------GKINIHKFHVAIPNADEQG--- 215 (763)
Q Consensus 158 -~~~~~~~---------~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i---------g~~~i~~~~~~~~s~~~~~--- 215 (763)
..+..+. -.....++..+.+++++.|+.+++|. +-... .....+... ...-+...+
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEE
Confidence 0000111 01123356667899999999999996 22111 111111110 111111111
Q ss_pred ----------ceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 216 ----------TCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 216 ----------~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.-+.++..+.|||||..+++++.|.
T Consensus 432 V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred EEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 1122246889999999999999998877
No 161
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.07 E-value=8.8e-09 Score=109.20 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=114.9
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEecccCCceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ 110 (763)
++++++++.|+.|.+|++ +++.+..+..+..+.+++|+|||+.+ ++++.++.|++||..+++.++.+..+. .+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 367889999999999999 56666777655667889999999976 566789999999999999888776543 357889
Q ss_pred eecCCCceec-cCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCc-EEE
Q 004298 111 WEEDAQPSKN-DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGS-ICF 188 (763)
Q Consensus 111 ws~~~~~l~s-~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~-I~l 188 (763)
|+|+++.++. ++ .++.+++||...... + ...... ... ....++++++++++++.++. +++
T Consensus 80 ~~~~g~~l~~~~~------~~~~l~~~d~~~~~~-~-~~~~~~--------~~~--~~~~~~~dg~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 80 LHPNGKILYIANE------DDNLVTVIDIETRKV-L-AEIPVG--------VEP--EGMAVSPDGKIVVNTSETTNMAHF 141 (300)
T ss_pred ECCCCCEEEEEcC------CCCeEEEEECCCCeE-E-eEeeCC--------CCc--ceEEECCCCCEEEEEecCCCeEEE
Confidence 9999986644 43 588999999875210 0 000000 001 11234577788888887654 555
Q ss_pred EEcCceeee-eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 189 NIFGIFPIG-KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 189 w~~~~~~ig-~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
|+......- .... ......++|+|||+.+++.+.
T Consensus 142 ~d~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 142 IDTKTYEIVDNVLV-------------------DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EeCCCCeEEEEEEc-------------------CCCccEEEECCCCCEEEEEcC
Confidence 554332211 1100 012346889999998877653
No 162
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.05 E-value=3.7e-09 Score=105.47 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEEc--cCceEEEec--CCCcEEEEEEccCCCEEEEEE--cCCcEEEEE
Q 004298 26 IAEWNPEKDLLAMATE----------DSKILLHRF--NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGL--EDGTITLHD 89 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~----------Dg~V~v~~l--~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwd 89 (763)
.+.|+|+|+.|++-.. -+...+|.+ ++..+-.+. ..+.|.+++|+|+|+.||+.. .++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5899999988776443 134556666 444444443 445799999999999887654 578999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
++ ++.+..+. ...+..+.|+|+|++++.++.. ...|.+.+||..... .+... .+. ......
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~-~i~~~--~~~----------~~t~~~ 150 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKK-KISTF--EHS----------DATDVE 150 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCE-Eeecc--ccC----------cEEEEE
Confidence 97 77777774 4678899999999999887621 135779999998421 11100 010 112345
Q ss_pred cCCCeeEEEEEcC------CCcEEEEEcCceeeeee
Q 004298 170 SHQRFSILCSGDK------DGSICFNIFGIFPIGKI 199 (763)
Q Consensus 170 ~~~~~~~L~sgs~------DG~I~lw~~~~~~ig~~ 199 (763)
++|+++++++++. |+.++||.+....+.+.
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 6788888888874 67788887655444443
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.05 E-value=3.4e-09 Score=112.49 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=134.3
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEcc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVE 91 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve 91 (763)
+-|...+.|+++.++.+..+||+++..|.|.|+.+ ++++--.+. .|..|.-+.|+|..+ .|.+++.+|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 33444567999999999999999999999999999 666655554 567888999999777 45678899999999998
Q ss_pred CCeEEEE-ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 92 NGKLLRS-LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 92 ~g~~~~~-l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
....++. ...|..+...|+|+|.+. ++++-+ .|+.|.+||...+...-. ......+ -..+
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG------~Dkki~~yD~~s~~s~~~--l~y~~Pl----------stva 257 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVG------YDKKINIYDIRSQASTDR--LTYSHPL----------STVA 257 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEec------ccceEEEeecccccccce--eeecCCc----------ceee
Confidence 6665554 567999999999999775 566666 799999999986422110 0001111 1234
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCC
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD 232 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpD 232 (763)
+.+++-+|+.|+..|.|..|+.++.+-- -..+..++.+|.+++|-+.
T Consensus 258 f~~~G~~L~aG~s~G~~i~YD~R~~k~P----------------v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKGELIAYDMRSTKAP----------------VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ecCCceEEEeecCCceEEEEecccCCCC----------------ceEeeecccceeEEEeeec
Confidence 6789999999999999999997764211 1122334467888988664
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.05 E-value=3.5e-09 Score=109.83 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=115.8
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|-.++|+|.- +.|++++.|.+|.+|+. +|.-+.++.|...|.++.|+-||.+|++++.|..|+|||.++|+.+..-.
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 38999999976 78899999999999999 88889999999999999999999999999999999999999999998887
Q ss_pred ccCC-ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC-eeEEE
Q 004298 101 SHTV-AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR-FSILC 178 (763)
Q Consensus 101 ~h~~-~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~L~ 178 (763)
+|.+ .-...-|-.++..+.+| .....++.+-+||...--.++ ....-+++ ...+..-++++ .-+.+
T Consensus 213 ~heG~k~~Raifl~~g~i~tTG---fsr~seRq~aLwdp~nl~eP~-~~~elDtS--------nGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTG---FSRMSERQIALWDPNNLEEPI-ALQELDTS--------NGVLLPFYDPDTSIVYL 280 (472)
T ss_pred cccCCCcceeEEeccCceeeec---cccccccceeccCcccccCcc-eeEEeccC--------CceEEeeecCCCCEEEE
Confidence 8865 45566788888854444 233468899999876421111 00000000 00111112233 33556
Q ss_pred EEcCCCcEEEEEcC
Q 004298 179 SGDKDGSICFNIFG 192 (763)
Q Consensus 179 sgs~DG~I~lw~~~ 192 (763)
+|-.||.|+.|.+.
T Consensus 281 ~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 281 CGKGDSSIRYFEIT 294 (472)
T ss_pred EecCCcceEEEEec
Confidence 67789999988643
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=5.8e-09 Score=104.39 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCC-----CEEEEEeCCCeEEEEEccC--ceEEE---e------cCCCcEEEEEEcc-CCCEEEEEEcCCc
Q 004298 22 SQIKIAEWNPEK-----DLLAMATEDSKILLHRFNW--QRLWT---I------SPGKSVTSLCWRP-DGKAIAVGLEDGT 84 (763)
Q Consensus 22 ~~V~~l~~sP~~-----~lLA~~s~Dg~V~v~~l~~--~~v~~---~------~~~~~V~~l~wsp-DG~~Lasg~~Dg~ 84 (763)
.+++.+.|.|+. ++||++ +..+++|++.. .++.. + .+..++++..|+. |-++|.+++-|.+
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 449999999976 577765 45799999952 22211 1 1345799999998 8899999999999
Q ss_pred EEEEEccCCe---EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCC
Q 004298 85 ITLHDVENGK---LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 85 V~lwdve~g~---~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..|||+++|. +..++-.|...|..|+|...+. .+++.+ .||.+|+||++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg------aDGSvRmFDLR~ 228 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG------ADGSVRMFDLRS 228 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec------CCCcEEEEEecc
Confidence 9999999873 3556779999999999998664 677777 899999999986
No 166
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.9e-09 Score=107.61 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=138.8
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-cEEEEEEccCCCEEEEEEcCCcEEEEEcc---
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-SVTSLCWRPDGKAIAVGLEDGTITLHDVE--- 91 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-~V~~l~wspDG~~Lasg~~Dg~V~lwdve--- 91 (763)
+++.....|..+-...++.+|++++.|..|.+|++.||.+..+..+. .-+..+.||||+++|+++-...|++|.+-
T Consensus 182 f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 182 FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred cchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 33333445777888888999999999999999999999999998543 45667899999999999999999999964
Q ss_pred CCe-----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccccc
Q 004298 92 NGK-----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 92 ~g~-----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
+|. .+..+++|.+.|...+|+++...+++.| .||++|+||..-.. ..-+........+. ....-.
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS------kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl--~aag~~ 333 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS------KDGKWRIWDTDVRYEAGQDPKILKEGSAPL--HAAGSE 333 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCCCcceeEEEe------cCCcEEEeeccceEecCCCchHhhcCCcch--hhcCCC
Confidence 332 2456889999999999999999999998 99999999875321 11111000000000 001111
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+....+|++++|+.+. ...++++.... |.. .+..-+++...|.+++|++||++++.++.
T Consensus 334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~---g~~-------------~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSF-GSDLKVFASED---GKD-------------YPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred ceEEEeCCCCcEEEeec-CCceEEEEccc---Ccc-------------chhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 12334567888888755 55777775222 211 01111234456899999999999988754
No 167
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.03 E-value=1.4e-08 Score=104.86 Aligned_cols=123 Identities=23% Similarity=0.312 Sum_probs=100.2
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCEEEE--EeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcE-
Q 004298 11 PFQLQFDKPVASQIKIAEWNPEKDLLAM--ATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTI- 85 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP~~~lLA~--~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V- 85 (763)
+++++...+-|.++.+++.|+.+.++|. ....|.|.||+. +-+.+-.+. |.+.+.|++|+|||++||++++.|+|
T Consensus 119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 3344433344566877888888889997 335689999998 777777776 99999999999999999999999985
Q ss_pred EEEEccCCeEEEEecccC--CceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 86 TLHDVENGKLLRSLKSHT--VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~--~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|++++.+|+.+..|+... ..|.+++|+|+++++++.| ..++|.+|.+.
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS------~TeTVHiFKL~ 248 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS------NTETVHIFKLE 248 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec------CCCeEEEEEec
Confidence 999999999999987533 4789999999999998887 78889888554
No 168
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.03 E-value=3.2e-09 Score=116.92 Aligned_cols=194 Identities=16% Similarity=0.270 Sum_probs=132.5
Q ss_pred EEEEeCCCeEEEEEccC---ceEEEec-------------------C-----------------CCcEEEEEEccCCCEE
Q 004298 36 LAMATEDSKILLHRFNW---QRLWTIS-------------------P-----------------GKSVTSLCWRPDGKAI 76 (763)
Q Consensus 36 LA~~s~Dg~V~v~~l~~---~~v~~~~-------------------~-----------------~~~V~~l~wspDG~~L 76 (763)
+.+++.|++|++|++.+ ..++.-+ + .-.+.+++.+|||++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 77899999999999954 1121110 0 0138999999999999
Q ss_pred EEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecC---CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 77 AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEED---AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~---~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
|+|..-|.+++|++.+-+....+..|++.|.|+.++-- .+++++++ .|+.|.++|....... .....+|.
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas------rdRlIHV~Dv~rny~l-~qtld~HS 547 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS------RDRLIHVYDVKRNYDL-VQTLDGHS 547 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc------CCceEEEEecccccch-hhhhcccc
Confidence 99999999999999988888889999999999999842 36788998 9999999998764221 11222222
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC------ceeeeeeee----------cccccccccCCCCCce
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG------IFPIGKINI----------HKFHVAIPNADEQGTC 217 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~------~~~ig~~~i----------~~~~~~~~s~~~~~~~ 217 (763)
. ++..+.+...+-...|++++.|..|.+-.+. .|+-++..+ ........++..|..+
T Consensus 548 s-------sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 548 S-------SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred c-------ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 2 2223344444444678888888888765332 122221111 1111223355667777
Q ss_pred eeec-----------------cceeeEEecCCCCEEEEEeecC
Q 004298 218 RLLN-----------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 218 ~l~~-----------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++++ +..-.+.+.|.|.+++..|+|+
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 7765 3455688999999999999987
No 169
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.1e-08 Score=115.37 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=111.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEE--EccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLH--DVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lw--dve~g~~ 95 (763)
.+..++|||+|+.||.++.+ ..|++|++.+.....+. ......+++|+|||+.|+++. .+|.+.|| |+.+++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~- 283 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT- 283 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-
Confidence 38899999999999987654 36999999543222222 222345789999999998875 68876665 555555
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...+..+...+....|+|||+.++..+. .++...+|.......... .. +... ....++++++
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~-----~~g~~~I~~~~~~~~~~~-~l-~~~~-----------~~~~~SpDG~ 345 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSD-----RSGSPQVYRMSASGGGAS-LV-GGRG-----------YSAQISADGK 345 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEEC-----CCCCceEEEEECCCCCeE-Ee-cCCC-----------CCccCCCCCC
Confidence 4566667778889999999997765541 456777876542111100 00 0000 1123467777
Q ss_pred EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.++.++.++ +..|+... |..... +.. + ....++|||||+.+++++.++
T Consensus 346 ~ia~~~~~~-i~~~Dl~~---g~~~~l-------t~~-------~--~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTS---GSTEVL-------SST-------F--LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred EEEEEcCCC-EEEEECCC---CCeEEe-------cCC-------C--CCCCceECCCCCEEEEEEcCC
Confidence 787777655 44465332 111100 000 0 123568999999999887654
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.3e-10 Score=128.09 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=113.7
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC-ceEEEe---cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRFNW-QRLWTI---SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~-~~v~~~---~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+.|..+.|+|.+ +++|+|++||.|.|||++. +.-+.. ...+.|.+++|+. ..+.||+|+.+|.+.|||++..+
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~ 195 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK 195 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence 4559999999977 5999999999999999943 222222 2456899999998 56689999999999999999887
Q ss_pred EEEEecccCC--ceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 LLRSLKSHTV--AVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~~~l~~h~~--~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+-.+..|.. .+..+.|+|++. .+++++++ ...-.|.+||++....++... .+| ...+-.+.|+..
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d---d~~PviqlWDlR~assP~k~~-~~H-------~~GilslsWc~~ 264 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD---DSAPVIQLWDLRFASSPLKIL-EGH-------QRGILSLSWCPQ 264 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCC---CCCceeEeecccccCCchhhh-ccc-------ccceeeeccCCC
Confidence 7766665543 477899999873 34444421 134578899988643322211 122 122334556553
Q ss_pred CCeeEEEEEcCCCcEEEEEcCc
Q 004298 172 QRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+ -.+|++++.|+.|.+|....
T Consensus 265 D-~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 265 D-PRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred C-chhhhcccCCCCeeEecCCC
Confidence 3 36899999999999998554
No 171
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=7.8e-09 Score=113.94 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=119.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+....|..++|++.++ |.+.+.+|.|.-|++ ++++...+. .++.|.+++.+|.++.+++||+||.+..+++..+++.
T Consensus 67 ~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence 4345699999996555 567788999999999 888888887 6789999999999999999999998899999888876
Q ss_pred EE--ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RS--LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~--l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+. +....+.|.+++|+|++..+++|+ .|+.|++||........ -...+...........+..+.+ -+-
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs------~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~---Lrd 215 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGS------IDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLF---LRD 215 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecc------cCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEE---eec
Confidence 54 444568999999999999999998 89999999987632111 0000000000000001111111 133
Q ss_pred eEEEEEcCCCcEEEEEcC
Q 004298 175 SILCSGDKDGSICFNIFG 192 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~ 192 (763)
+.+++|++.|+|.+|+..
T Consensus 216 ~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSI 233 (691)
T ss_pred CcEEEecCCceEEEEccc
Confidence 579999999999999744
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=9.7e-09 Score=103.80 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec----------CC----C--------------------------
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----------PG----K-------------------------- 62 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~----------~~----~-------------------------- 62 (763)
|.+++||++|++|.+++.|..|.+|++ .|..+..+. |. .
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC
Confidence 999999999999999999999999998 665443332 10 0
Q ss_pred -------cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeEEEeecCCCceeccCCCCCcccCCcee
Q 004298 63 -------SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 63 -------~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~ 134 (763)
...+..|.+.|++|.+|.+.|.+.+++.++-++++.++... ..|..|.++..|++++.-. .|+.||
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt------sDRvIR 221 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT------SDRVIR 221 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec------CCceEE
Confidence 01233477789999999999999999999999999887655 7899999999999887766 799999
Q ss_pred ecCCCCCCCCCCCcccCCcccc---cCCcccccceecccCCCeeEEEEEc-CCCcEEEEE
Q 004298 135 FFPPAPRIPQMPGLVSGDTGFT---DDSEDSFRELANSSHQRFSILCSGD-KDGSICFNI 190 (763)
Q Consensus 135 ~wd~~~~~~~l~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~ 190 (763)
.++...-...- ..+..... ...-+..+.-.++++.++.+++.|+ ....+++|.
T Consensus 222 ~ye~~di~~~~---r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 222 TYEISDIDDEG---RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred EEehhhhcccC---ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 99875311110 00000000 0000112223345677888888777 344677886
No 173
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.00 E-value=1e-09 Score=116.57 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=135.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+.+++.|||.++..++..||.|.||++ |...|..+. |.+.+.||..++||..|-+|+-|++||-||+++|+.+....
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd 590 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD 590 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence 3678999999999999999999999999 555666666 77889999999999999999999999999999887665443
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..+.|.++..+|++.+++.|- +++.+.+.....+ ...+. .|.+.+ ++..+...++.+++
T Consensus 591 -F~SQIfSLg~cP~~dWlavGM------ens~vevlh~skp~kyqlh----lheScV---------LSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 591 -FSSQIFSLGYCPTGDWLAVGM------ENSNVEVLHTSKPEKYQLH----LHESCV---------LSLKFAYCGKWFVS 650 (705)
T ss_pred -hhhhheecccCCCccceeeec------ccCcEEEEecCCccceeec----ccccEE---------EEEEecccCceeee
Confidence 257899999999999999986 7777777665442 11111 122222 44456678889999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.+.|.-+..|- .+.|.-- .+ ... ..+|.++..|.|.++++.++.+
T Consensus 651 tGkDnlLnawr---tPyGasi-Fq----skE----------~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 651 TGKDNLLNAWR---TPYGASI-FQ----SKE----------SSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred cCchhhhhhcc---Cccccce-ee----ccc----------cCcceeeeeccCceEEEecCCC
Confidence 99999999885 2222210 00 000 1368888999998888776544
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=5.2e-09 Score=113.22 Aligned_cols=112 Identities=23% Similarity=0.273 Sum_probs=96.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc---c------CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF---N------WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~------~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.|..++|+|....|++++.||.+.+|++ . -.++|++. |.++|.|++..++|+.+.+|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 4888999999999999999999999999 1 13678876 889999999999999999999999999995531
Q ss_pred ------C----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 93 ------G----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 93 ------g----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .....+.+|.+.|+.+.+++....+.+++ .||+++.|....
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs------~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS------SDGTVRLWEPTE 427 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeec------CCceEEeeccCC
Confidence 1 23456789999999999999988899998 899999997654
No 175
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.9e-08 Score=113.23 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEE-EEcCCcEEEEEcc-CCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAV-GLEDGTITLHDVE-NGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Las-g~~Dg~V~lwdve-~g~~ 95 (763)
..+...+|+|+|+.||.++.+ ..|++|++.+.....+. ....+.+.+|+|||+.|+. .+.+|...||.+. ++..
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 348889999999999987643 35999999544333332 3345678999999998875 5678876666553 2334
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-ccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-VSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
.+.+..+...+....|+|||+.++..++ ..+...+|............ ..+. .. ....+++++
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~-----~~g~~~Iy~~~~~~g~~~~lt~~g~---------~~--~~~~~SpDG 339 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSD-----RGGAPQIYRMPASGGAAQRVTFTGS---------YN--TSPRISPDG 339 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEec-----CCCCcEEEEEECCCCceEEEecCCC---------Cc--CceEECCCC
Confidence 5666666666778899999998776541 23455555432110000000 0000 00 112345677
Q ss_pred eEEEEEcCCC---cEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 175 SILCSGDKDG---SICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 175 ~~L~sgs~DG---~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.++..+.++ .|.+|+...-....+ +.+ ......+|||||+.+++.+.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~l----------t~~---------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTAL----------TDT---------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEc----------cCC---------CCccCceECCCCCEEEEEEecC
Confidence 7777665443 466665432111111 000 0123578999999999987644
No 176
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.8e-08 Score=108.05 Aligned_cols=115 Identities=11% Similarity=0.233 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCC--EEEEEEcCCcEEEEEccCCe----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGK---- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve~g~---- 94 (763)
+.|.+++..|.|..||+|+.||+|+||.+ +|.+++++.-++.|.|++|+|.+. .||++..+. +.|.+..-|.
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV 479 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh
Confidence 56999999999999999999999999999 899999999999999999999776 566665544 4444322120
Q ss_pred ---------------------------------EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 ---------------------------------LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ---------------------------------~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
-++..-.|...|..+.|+..|.++++...+ ...+.+.+.++..
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~---~~~~~VliHQLSK 555 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD---SGNKSVLIHQLSK 555 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC---CCcceEEEEeccc
Confidence 012222467899999999999999875421 1345566655543
No 177
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.1e-08 Score=109.71 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATE---DSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg--~V~lwdve~g~~ 95 (763)
.+...+|||+|+.||..+. +..|++|++.+.....+. ....+.+.+|+|||+.|+... .+| .|++||+++++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 4889999999999987653 357889998544333332 233456789999999888763 455 588999988776
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.+ +..+...+....|+|+|+.++..+
T Consensus 280 ~~-lt~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 280 RQ-VTDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred EE-ccCCCCCcCceEECCCCCEEEEEe
Confidence 44 444456788999999999887665
No 178
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=6.2e-08 Score=109.48 Aligned_cols=114 Identities=10% Similarity=0.142 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEE-EcCCc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATE---DSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVG-LEDGT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg-~~Dg~--V~lwdve~g~~ 95 (763)
.+...+|+|+|+.||..+. +..|++|++.+.....+. ....+.+.+|+|||+.|+.. ..+|. |++||+++++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT 282 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence 4899999999999998764 468999999544433333 44567789999999987654 45554 77778887765
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+..+........|+|||+.++..+.. .....+.++|...
T Consensus 283 -~~Lt~~~~~~~~~~~spDG~~i~f~s~~---~g~~~Iy~~d~~g 323 (435)
T PRK05137 283 -TRLTDSPAIDTSPSYSPDGSQIVFESDR---SGSPQLYVMNADG 323 (435)
T ss_pred -EEccCCCCccCceeEcCCCCEEEEEECC---CCCCeEEEEECCC
Confidence 4566666677889999999987765411 0123455666543
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.92 E-value=1e-07 Score=107.90 Aligned_cols=215 Identities=20% Similarity=0.160 Sum_probs=130.0
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEc-cCce--EEEec-----CCCcEEEEEEccCCCE--EEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRF-NWQR--LWTIS-----PGKSVTSLCWRPDGKA--IAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l-~~~~--v~~~~-----~~~~V~~l~wspDG~~--Lasg~~Dg~V~lwdv 90 (763)
..|.+++|||. .+++|.|+.+|+|.+|++ .++. .+.+. |...|+.+.|-.+-.- |++++.||.|+.|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 45999999994 589999999999999999 3333 34332 6788999999875544 999999999999987
Q ss_pred cCCeE------EEE---------------------------------------------------------ecccCCcee
Q 004298 91 ENGKL------LRS---------------------------------------------------------LKSHTVAVV 107 (763)
Q Consensus 91 e~g~~------~~~---------------------------------------------------------l~~h~~~V~ 107 (763)
+.-.. ... +..|.++|.
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 63111 000 001234455
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEE
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSIC 187 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~ 187 (763)
++.++|-+..+...+ .|-++++|.......++..... ..+.+....|++ .+-.++++++.||++.
T Consensus 403 ~v~~nPF~~k~fls~------gDW~vriWs~~~~~~Pl~~~~~--------~~~~v~~vaWSp-trpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSV------GDWTVRIWSEDVIASPLLSLDS--------SPDYVTDVAWSP-TRPAVFATVDGDGNLD 467 (555)
T ss_pred eeecCCCccceeeee------ccceeEeccccCCCCcchhhhh--------ccceeeeeEEcC-cCceEEEEEcCCCcee
Confidence 555555443222222 3777888866532222221111 011122344544 3346899999999999
Q ss_pred EEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 188 FNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 188 lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
+|++..-..+.+. +.++.....+.+.|+++|+.++++-.. +.++++.+..++.
T Consensus 468 iWDLl~~~~~Pv~---------------s~~~~~~~l~~~~~s~~g~~lavGd~~------------G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 468 IWDLLQDDEEPVL---------------SQKVCSPALTRVRWSPNGKLLAVGDAN------------GTTHILKLSESLA 520 (555)
T ss_pred hhhhhccccCCcc---------------cccccccccceeecCCCCcEEEEecCC------------CcEEEEEcCchhh
Confidence 9986543322221 011111234567889999988876443 3788888876666
Q ss_pred ccCchHHHHHH
Q 004298 268 SKRKDELYQVA 278 (763)
Q Consensus 268 ~~~~~~l~~la 278 (763)
...+++-..++
T Consensus 521 ~~~~~e~~~~~ 531 (555)
T KOG1587|consen 521 VPSPNEKALFA 531 (555)
T ss_pred ccCcchHHHHH
Confidence 65555433333
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.7e-09 Score=121.29 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCeEEEEEccC----ceEE---Ee-cCCCcEEEEEEccCCC-EEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPEKDL----LAMATEDSKILLHRFNW----QRLW---TI-SPGKSVTSLCWRPDGK-AIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~~~l----LA~~s~Dg~V~v~~l~~----~~v~---~~-~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lw 88 (763)
.+-..++|++.++. ||.|.+||.|.+|+... +..- +. +|.+.|.++.|++.+. .||+|++||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999998865 99999999999999843 2221 11 2788999999999554 99999999999999
Q ss_pred EccCCeEEEEecc--cCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLKS--HTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~~--h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
|+.+-+.-.+... -.+.|.+++|+..-. .+++++ .++...+||++.+.+.+.-...+. ...+..
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s------~sg~~~iWDlr~~~pii~ls~~~~-------~~~~S~ 211 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS------PSGRAVIWDLRKKKPIIKLSDTPG-------RMHCSV 211 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC------CCCCceeccccCCCcccccccCCC-------ccceee
Confidence 9987544333311 246899999987654 567776 788999999997633322111111 011223
Q ss_pred eecccCCCeeEEEEEcCCC--cEEEEEcC
Q 004298 166 LANSSHQRFSILCSGDKDG--SICFNIFG 192 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG--~I~lw~~~ 192 (763)
+.|.++..-.+++...+|+ .|.+|+.+
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 5565544434444433333 68899854
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.90 E-value=3.8e-09 Score=118.29 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.|+.|..+|.++++|++|..|+||.. ++.++.+.. |...|+.++.+.+..++|+++.|..|++|-+.+|..+..+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 4999999999999999999999999998 666666665 77889999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+|++.|++|+|+|-. +.+ .||++++||.+
T Consensus 272 ghtgavtaiafsP~~----sss------~dgt~~~wd~r 300 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA----SSS------DDGTCRIWDAR 300 (1113)
T ss_pred ccccceeeeccCccc----cCC------CCCceEecccc
Confidence 999999999999864 334 79999999987
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.89 E-value=1.2e-08 Score=102.10 Aligned_cols=160 Identities=20% Similarity=0.272 Sum_probs=113.4
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccC-CeE
Q 004298 23 QIKIAEWNP--EKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVEN-GKL 95 (763)
Q Consensus 23 ~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~-g~~ 95 (763)
..++-+||| +++.+|+. .|+++..|++ +..+.|.+. ||..|..+.|+|+-+ +|++|++||.|+|||.++ ...
T Consensus 172 ~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred eecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 356778999 67887754 5899999999 667888886 899999999999776 678899999999999984 567
Q ss_pred EEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCC-----------CC---------cccCCcc
Q 004298 96 LRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQM-----------PG---------LVSGDTG 154 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-----------~~---------~~s~~~~ 154 (763)
+..+.+|...|+++.|+|.. +++.+++ .|..+.+|......... .. ...+...
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~------SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ 324 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGG------SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE 324 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecC------CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc
Confidence 88899999999999999865 5667777 68888887554311000 00 0001111
Q ss_pred cccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 155 FTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
..+..++++....|+..+. =++++-+.||.+.|..
T Consensus 325 tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISS 359 (370)
T ss_pred cccccccceEEEeeccCCC-eeEEEeccCceEEeec
Confidence 1223344555555544333 3788888888887653
No 183
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=7.8e-08 Score=108.52 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEE-EcCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVG-LEDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg-~~Dg--~V~lwdve~g~~ 95 (763)
.+...+|+|+++.||.++.+ ..|++|++.+.....+. ......+.+|+|||+.|+.. +.+| .|++||+.+++.
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 47889999999999987743 46999999544333332 23345678999999988654 4555 599999988775
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+|+|+.++..+
T Consensus 285 -~~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 285 -TRLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred -EECccCCCCccceEECCCCCEEEEEE
Confidence 45555555667899999999887665
No 184
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.88 E-value=1.9e-09 Score=109.57 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+..|..+.++|+. +++++++.|..|++|++ +...+.-+- |...|.++.|++||.+||+++.|.++++|++...+
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 4569999999987 78999999999999999 555555553 77899999999999999999999999999987432
Q ss_pred EEEE----------------------------ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC---CC
Q 004298 95 LLRS----------------------------LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR---IP 143 (763)
Q Consensus 95 ~~~~----------------------------l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~---~~ 143 (763)
.... -..|...|-|+.|-- .++.+-| -++.|.+|..... ..
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks------cenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS------CENAIVCWKPGKLEESIH 286 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecc------cCceEEEEecchhhhhhh
Confidence 1111 113566677777753 4555544 4667888865211 11
Q ss_pred CCCCcccCCcccc--cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeec
Q 004298 144 QMPGLVSGDTGFT--DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 144 ~l~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
......+..+.+. .-....+.-+.+.+++.+++||.|...|+|.+|+++..+-..... .+.+ .-.
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt-------l~~s------~~~ 353 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT-------LTHS------KSG 353 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce-------EEec------ccc
Confidence 1100011111111 111222334556777888999999999999999977543221110 0000 111
Q ss_pred cceeeEEecCCCCEEEEEeecC
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+.+||.||..|++.|.++
T Consensus 354 ~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 354 STVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred ceeeeeeecccCcEEEEEeCCC
Confidence 3588999999999999999876
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.88 E-value=1e-07 Score=96.80 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCc---------------eEEEecCCCcEEEEEEc-------cCCCEEEEEEc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQ---------------RLWTISPGKSVTSLCWR-------PDGKAIAVGLE 81 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---------------~v~~~~~~~~V~~l~ws-------pDG~~Lasg~~ 81 (763)
.+.+.|+|||.-|.+-+.|..+.+|++... .......+..|..-+|= |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999998321 12233356778888885 78889999999
Q ss_pred CCcEEEEEccCCeEEEEeccc--CC---ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC---CcccCCc
Q 004298 82 DGTITLHDVENGKLLRSLKSH--TV---AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP---GLVSGDT 153 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~h--~~---~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~---~~~s~~~ 153 (763)
+.-|++||.-+|+...++++. .. .-.++.|+|||..+..| ..+.|++||+..+-...+ ....+..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-------ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-------YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-------ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 999999999999998887653 22 45689999999999888 589999999833211111 0011110
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceeeEEecCC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD 232 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpD 232 (763)
+ ....+.++.+.+ .+...+++|+...++-||.-+. -+.... + -..+.|+.++|.+|
T Consensus 205 g----q~giisc~a~sP-~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----------g-------gh~gGvThL~~~ed 261 (406)
T KOG2919|consen 205 G----QKGIISCFAFSP-MDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----------G-------GHGGGVTHLQWCED 261 (406)
T ss_pred c----ccceeeeeeccC-CCCcceeeecccceeeeEecCCCCceeee-----------c-------ccCCCeeeEEeccC
Confidence 0 011122233322 2335899999888887774221 111110 0 11246899999999
Q ss_pred CCEEEEEee
Q 004298 233 LFHLTVLCS 241 (763)
Q Consensus 233 g~~Llv~~~ 241 (763)
|++|++++.
T Consensus 262 Gn~lfsGaR 270 (406)
T KOG2919|consen 262 GNKLFSGAR 270 (406)
T ss_pred cCeeccccc
Confidence 999998765
No 186
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.2e-07 Score=95.96 Aligned_cols=158 Identities=16% Similarity=0.319 Sum_probs=105.8
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEcc-----C-ceEE----Eec-CCCcEEEEEEcc--CCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFN-----W-QRLW----TIS-PGKSVTSLCWRP--DGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~-----~-~~v~----~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~ 86 (763)
+.|..+.|-+ =|+.+|+++.|+++.||.-. . .+-| ++. ....|+.++|.| -|-.+|+++.||.+|
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 4499999965 47999999999999999851 1 1223 232 456799999999 577999999999999
Q ss_pred EEEccCC------eEEEEec-------ccCCceeEEEeecCC---CceeccCCCCCcccCCceeecCCCCC------CCC
Q 004298 87 LHDVENG------KLLRSLK-------SHTVAVVCLNWEEDA---QPSKNDFGNIPTYEDRTSRFFPPAPR------IPQ 144 (763)
Q Consensus 87 lwdve~g------~~~~~l~-------~h~~~V~~l~ws~~~---~~l~s~s~~~~~~~d~~i~~wd~~~~------~~~ 144 (763)
||+.-+- .+.+.+. .+..+-.|+.|+|.- +.++.|+.. ..-.-+.+.+|..... ...
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e-~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE-DAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc-CCccccceEEEEecCCcceeeeehh
Confidence 9986543 2233333 345678899999743 567777633 1112346677644322 122
Q ss_pred CCCcccCCcccccCCcccccceecccC--CCeeEEEEEcCCCcEEEEEcC
Q 004298 145 MPGLVSGDTGFTDDSEDSFRELANSSH--QRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 145 l~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~L~sgs~DG~I~lw~~~ 192 (763)
++ ++ ...+..+.|+++ ....+|++++.|| |+||..+
T Consensus 219 L~----d~-------~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 219 LP----DH-------TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred cC----CC-------CCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 22 22 233344555553 4568999999999 9999655
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.87 E-value=1.8e-07 Score=101.58 Aligned_cols=204 Identities=9% Similarity=-0.027 Sum_probs=123.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcc--C---ceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPEKDLLAMATE-DSKILLHRFN--W---QRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~--~---~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
++....++++|+++++++++. ++.|.+|+++ + +.+..+.......+++++|||+++.+++ .++.|.+||+.+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 345678999999998887764 7899999984 2 2233333334577889999999886655 6799999999763
Q ss_pred eEEE-------EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcccccCCccccc
Q 004298 94 KLLR-------SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 94 ~~~~-------~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~ 164 (763)
..+. .+.. .....++.|+|+++++.+.. ..++++.+|+.......+. ........-. .... .
T Consensus 159 g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~--~~~~-~ 229 (330)
T PRK11028 159 GHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDPHGEIECVQTLDMMPADF--SDTR-W 229 (330)
T ss_pred CcccccCCCceecCC-CCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcC--CCCc-c
Confidence 3221 1111 34567899999999887664 1488999998763211110 0000000000 0000 0
Q ss_pred ceecccCCCeeEEEEEc-CCCcEEEEEcCce-----eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 165 ELANSSHQRFSILCSGD-KDGSICFNIFGIF-----PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~-----~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
......++++++++++. .++.|.+|+++.- .++.++ ++ .....++++|||++|++
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~---------~~----------~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP---------TE----------TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe---------cc----------ccCCceEECCCCCEEEE
Confidence 11223457777777775 4789999976421 112111 11 01236799999999999
Q ss_pred EeecCccccccCCCCCCcEEEEEee
Q 004298 239 LCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 239 ~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
+...+ ..+.++.+|
T Consensus 291 a~~~~-----------~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKS-----------HHISVYEID 304 (330)
T ss_pred EEccC-----------CcEEEEEEc
Confidence 86532 266676664
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.6e-07 Score=92.06 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=91.4
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-------CceEEEecC--------CCcEEEEEEccCCCEEEEE
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-------WQRLWTISP--------GKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-------~~~v~~~~~--------~~~V~~l~wspDG~~Lasg 79 (763)
.|+.| |..++|. .++|.+|+ ||.|+-|..+ -+++|...+ -..|+++-..|....+..+
T Consensus 60 ahdgp----iy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 60 AHDGP----IYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred ccCCC----eeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence 36666 9999998 45555554 6999877762 235676652 2368999999987777778
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
+.|+.++-||+|+|+..+.+++|++.|.|+.-......+.+|+ +||++|+||.++.
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~------EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA------EDGTVRVWDTKTQ 188 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC------CCccEEEEecccc
Confidence 8999999999999999999999999999999855556677888 9999999999873
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.7e-07 Score=96.54 Aligned_cols=203 Identities=17% Similarity=0.145 Sum_probs=121.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC----ceE-----------EEecCCCcEEEEEEccCCCEEEEEE-cCCc
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNW----QRL-----------WTISPGKSVTSLCWRPDGKAIAVGL-EDGT 84 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~----~~v-----------~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~ 84 (763)
..|++++|-|-+ .-+|+|+..| |.+|..+. .+. ..-+....|+++.|.+||..+++++ .|..
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence 349999999966 5677776555 88998732 221 1111224799999999999999988 7889
Q ss_pred EEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC-CcccCCcccccCCcccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP-GLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~-~~~s~~~~~~~~~~~~~ 163 (763)
|.|||+.+|..+.-....-+.++-+.|+||+..+..+. -|+..++|+........+ ...++ .+
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt------~davfrlw~e~q~wt~erw~lgsg----------rv 283 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT------CDAVFRLWQENQSWTKERWILGSG----------RV 283 (445)
T ss_pred EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec------ccceeeeehhcccceecceeccCC----------ce
Confidence 99999999877655544467899999999999877666 689999996554322111 11111 12
Q ss_pred cceecccCCCee-EEEEEcCCCcEEEEEcCce----e-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 164 RELANSSHQRFS-ILCSGDKDGSICFNIFGIF----P-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 164 ~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~----~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
+...|. +.+. +|.+.+..-.++--.+... . .+.+.-+..+...........-++.-+++.+++|.|.|.+|+
T Consensus 284 qtacWs--pcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 284 QTACWS--PCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeeec--CCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 223343 4443 3444443333332222111 0 111111111111111111111233446788999999999999
Q ss_pred EEeecC
Q 004298 238 VLCSGQ 243 (763)
Q Consensus 238 v~~~d~ 243 (763)
+...++
T Consensus 362 v~fKg~ 367 (445)
T KOG2139|consen 362 VIFKGQ 367 (445)
T ss_pred EEEcCC
Confidence 988765
No 190
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=98.81 E-value=8e-09 Score=76.76 Aligned_cols=46 Identities=39% Similarity=0.854 Sum_probs=42.7
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT 57 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~ 57 (763)
|+.-+++.++++|.+++|||+++++|+++.+|.|.+||++||++|+
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCccC
Confidence 4566788999999999999999999999999999999999999984
No 191
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=5.4e-08 Score=98.49 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=115.8
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.|+++ |.++..++-...+++|+.|++|++|+. +...+..+..+++|.|+.. .|..|++|+.|..|.+||+++.
T Consensus 92 th~~~----i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 92 THDEG----IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cCCCc----eEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 35555 999999999999999999999999999 4556667777888988855 5779999999999999999976
Q ss_pred eEEEEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceee--cCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 94 KLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRF--FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~--wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
....+.+ .-.-.+.|++.-|++.-.+.++ -+|.+-+ +|..+......-.+..|.....+.+.....-...
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS------ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSS------IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEe------ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 5443222 2245789999999887777776 6777655 4544221111112222222111112222222344
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+++....|++|+.||.|.+|+...
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred eccccceEEecCCCceEEEccCcc
Confidence 567778899999999999997543
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=8.6e-08 Score=98.23 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=120.3
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCeEE--EEecccC-Cce
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGKLL--RSLKSHT-VAV 106 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~~~--~~l~~h~-~~V 106 (763)
..+|++-..|.|++|+. +++.+-.++ +...++.++|.. .+..+.+++.||+|++||++..... ..+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56888999999999999 777777776 556677888877 4678999999999999999865433 3344444 456
Q ss_pred eEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcE
Q 004298 107 VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSI 186 (763)
Q Consensus 107 ~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I 186 (763)
.|++-+.+++.+++|. -..-.+-.+.+||.+.....+......|. +.+..+.+.+ .+.++|++|+.||-|
T Consensus 121 ~~ld~nck~~ii~~Gt--E~~~s~A~v~lwDvR~~qq~l~~~~eSH~-------DDVT~lrFHP-~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGT--ELTRSDASVVLWDVRSEQQLLRQLNESHN-------DDVTQLRFHP-SDPNLLLSGSVDGLV 190 (376)
T ss_pred eEeeccCcCCeEEecc--ccccCceEEEEEEeccccchhhhhhhhcc-------CcceeEEecC-CCCCeEEeecccceE
Confidence 6777666677777664 12224778899999875433332222222 2233344433 345899999999999
Q ss_pred EEEEcCceeeeeeeecccccccccCCCCCceeee--ccceeeEEecCCC-CEEEEEeecC
Q 004298 187 CFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLL--NASIYKVALSKDL-FHLTVLCSGQ 243 (763)
Q Consensus 187 ~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~--~~~I~~v~~SpDg-~~Llv~~~d~ 243 (763)
.+++...-+-. +..+... -.+|..+.|..++ +.+++++...
T Consensus 191 nlfD~~~d~Ee----------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 191 NLFDTKKDNEE----------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred EeeecCCCcch----------------hhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence 99985432110 1111111 1358889998887 4566665533
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.81 E-value=6.9e-08 Score=98.12 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=114.4
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE-----ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT-----ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~-----~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
|++. |+.++|+|..+.|++++.|..-+||.......|. +.++..++++.|+|.++.||+|+.-..|.+|-.
T Consensus 54 Hd~~----vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~ 129 (361)
T KOG1523|consen 54 HDKI----VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY 129 (361)
T ss_pred hCcc----eeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence 5666 9999999999999999999999999983333333 237788999999999999999999999999988
Q ss_pred cCCeEE----EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC-------CCCCCCCCCcccCCcccccCC
Q 004298 91 ENGKLL----RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP-------APRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 91 e~g~~~----~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~-------~~~~~~l~~~~s~~~~~~~~~ 159 (763)
|....- +.-+.+.+.|+++.|+|++-+++.|+ -|+..|+|.. ++..++-.. .......+.+.
T Consensus 130 E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs------~D~k~rVfSayIK~Vdekpap~pWgs-k~PFG~lm~E~ 202 (361)
T KOG1523|consen 130 EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS------TDGKCRVFSAYIKGVDEKPAPTPWGS-KMPFGQLMSEA 202 (361)
T ss_pred ecccceehhhhhCCccccceeeeeccCCcceecccc------cCcceeEEEEeeeccccCCCCCCCcc-CCcHHHHHHhh
Confidence 743321 22235678999999999999999998 7888888732 221110000 00000000000
Q ss_pred -cccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 160 -EDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 160 -~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...--.....+++.++.|+-.+.|+.+.+-+...
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 0000012234567888899999999998876443
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.80 E-value=3.9e-07 Score=94.41 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec----CCCcEEEEEEccCCCEEEEEE--cCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS----PGKSVTSLCWRPDGKAIAVGL--EDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~----~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdve~g 93 (763)
|..|.++..+. +.|+++-. +.|+||+++ .+.+.++. +...+.++..++.+.++|.-+ ..|.|.|||+.+-
T Consensus 87 pt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 34488888874 34444443 349999994 44455554 334577888888888999865 5799999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+..+..|.+.+.|++|+++|..+|++|
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATAS 192 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEec
Confidence 99999999999999999999999999998
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.76 E-value=1.2e-06 Score=95.28 Aligned_cols=197 Identities=11% Similarity=0.091 Sum_probs=118.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEEccCc-e---EEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC-Ce
Q 004298 22 SQIKIAEWNPEKDLLAMAT-EDSKILLHRFNWQ-R---LWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN-GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~-~---v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~-g~ 94 (763)
+....++++|+++.|++++ .++.|.+|+++.. . +-.+..+.....++|+|||+++++++ .++.|.+|++++ |.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 3467789999999887664 5788999998532 2 22333445677899999999888876 589999999963 42
Q ss_pred ---EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 ---LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ---~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+. +.....++.++|+++++.+++ ..++.+.+||..+. ..+............ ..... ...++
T Consensus 115 ~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~-----~~~~~v~v~d~~~~-g~l~~~~~~~~~~~~--g~~p~--~~~~~ 183 (330)
T PRK11028 115 PVAPIQIIE-GLEGCHSANIDPDNRTLWVPC-----LKEDRIRLFTLSDD-GHLVAQEPAEVTTVE--GAGPR--HMVFH 183 (330)
T ss_pred CCCceeecc-CCCcccEeEeCCCCCEEEEee-----CCCCEEEEEEECCC-CcccccCCCceecCC--CCCCc--eEEEC
Confidence 233332 234567788999998875544 36789999988652 111100000000000 00111 12345
Q ss_pred CCeeEEEEEcC-CCcEEEEEcCc----e-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 172 QRFSILCSGDK-DGSICFNIFGI----F-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 172 ~~~~~L~sgs~-DG~I~lw~~~~----~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++++++++. +++|.+|++.. + .+.++.. .+... .+ . + | ...+.++|||++++++..
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~-~~---~--~-~---~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADF-SD---T--R-W---AADIHITPDGRHLYACDR 247 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcC-CC---C--c-c---ceeEEECCCCCEEEEecC
Confidence 77777777665 99999998752 1 1122211 00000 00 0 0 1 235789999999999754
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.9e-08 Score=104.20 Aligned_cols=198 Identities=12% Similarity=0.181 Sum_probs=139.1
Q ss_pred EeecCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEE-e-cCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 13 QLQFDKPVASQIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWT-I-SPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 13 ~~~~~k~~~~~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~-~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
.+.+.|+ |..+.|+..|++||++..+ ..|.||.+..++... + +.++.|.++.|+|.-.+|++++. ..|+|
T Consensus 517 ~I~~~k~----i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 517 VIKHPKS----IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred EEecCCc----cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE
Confidence 3456666 9999999999999998765 469999996544432 2 25677999999999888888875 67999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC---CCCCCCcccCCcccccCCccccc
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR---IPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~---~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
||+..++++.++......|..|+.+|.|..++.++ .|+.+..+|+.-. ...+.. |...+
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs------~d~k~~WfDldlsskPyk~lr~----H~~av-------- 653 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS------YDKKMCWFDLDLSSKPYKTLRL----HEKAV-------- 653 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec------CCCeeEEEEcccCcchhHHhhh----hhhhh--------
Confidence 99988888877766677899999999998888888 7888888876532 122221 11111
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeee-----eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEE
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIG-----KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig-----~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
...+++....++++|+.||++.++--..+..- -+++..+.++. +.-+..|.++.|.|..-.|+.+
T Consensus 654 -r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~---------~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 654 -RSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE---------KTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred -hhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce---------eecccceEeecccCCCceEEec
Confidence 12357789999999999999999842222111 12222222121 1112347889999998899888
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
+.++
T Consensus 724 GAd~ 727 (733)
T KOG0650|consen 724 GADG 727 (733)
T ss_pred CCCc
Confidence 7665
No 197
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.75 E-value=6.9e-07 Score=97.39 Aligned_cols=187 Identities=27% Similarity=0.314 Sum_probs=129.5
Q ss_pred CeEEEEE-cCCCC-EEEEEeC-CCeEEEEEccC--ceEEEec-CCCcEEEEEEccCCCEEEEEEc-CCcEEEEEccCCeE
Q 004298 23 QIKIAEW-NPEKD-LLAMATE-DSKILLHRFNW--QRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~-sP~~~-lLA~~s~-Dg~V~v~~l~~--~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve~g~~ 95 (763)
.+..+.+ ++++. .++..+. |+.+.+|+... ..+..+. |...|.+++|+|+++.+++++. |+.+++|++.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 4677777 88887 5555444 89999999964 5554443 7788999999999999999986 99999999999899
Q ss_pred EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+..+..|...|.++.|+|++. .+++++ .|+.+++||..... .......++... . +. .+.+.+
T Consensus 191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~d~~i~~wd~~~~~-~~~~~~~~~~~~-----~-~~----~~~~~~ 253 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPDGGLLIASGS------SDGTIRLWDLSTGK-LLRSTLSGHSDS-----V-VS----SFSPDG 253 (466)
T ss_pred EEeeccCCCceEEEEEcCCcceEEEEec------CCCcEEEEECCCCc-EEeeecCCCCcc-----e-eE----eECCCC
Confidence 999999999999999999997 555545 79999999665210 000011111111 0 11 233444
Q ss_pred eEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 175 SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
..+++++.|+.+++|+........... . .....+.++.|+|++..++....+
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~---~-------------~~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTL---S-------------GHSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEE---e-------------cCCccEEEEEECCCCCEEEEeeCC
Confidence 778899999999999866443211100 0 002357778888888888774443
No 198
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.75 E-value=8.8e-08 Score=101.42 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=112.9
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc---eEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE-
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ---RLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~---~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~- 95 (763)
++|.++.|+|.. +.+.+.+.||+|++-++++. .+...+. ......+.|+.+...+..|..=|...+||.++++.
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 349999999965 78889999999999888543 3334332 23567788988888888888777999999987554
Q ss_pred EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCC-CC-cccCCcccccCCcccccceecccCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PG-LVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~-~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
...+..|...|++++++|... ++++++ .|++.++||++.-..+. |- +.-.|.. .+.. ..++|
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s------~D~T~kIWD~R~l~~K~sp~lst~~Hrr-------sV~s--AyFSP 379 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATAS------LDQTAKIWDLRQLRGKASPFLSTLPHRR-------SVNS--AYFSP 379 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecc------cCcceeeeehhhhcCCCCcceecccccc-------eeee--eEEcC
Confidence 677788999999999999875 678888 89999999998632222 10 0111211 1222 23445
Q ss_pred CeeEEEEEcCCCcEEEEEcC
Q 004298 173 RFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~ 192 (763)
.+-.|++-+.|.+|++|+-.
T Consensus 380 s~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 380 SGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCceEeeccCCceEEeecc
Confidence 55458999999999999854
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.73 E-value=2.1e-08 Score=99.26 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-------EEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-------LWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-------v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+|.++.+.+..+.=++|+.+..+..|.++++. ..++ .+..|..+..+||+|.+|+++.|+.||+|+.++..
T Consensus 206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 349999999877777788888899999986541 1111 23357889999999999999999999999999999
Q ss_pred EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.+..++.|.+.|.+++|+|+...++.++ .|.+|-+|++
T Consensus 285 pLAVLkyHsagvn~vAfspd~~lmAaas------kD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHSAGVNAVAFSPDCELMAAAS------KDARISLWKL 322 (323)
T ss_pred chhhhhhhhcceeEEEeCCCCchhhhcc------CCceEEeeec
Confidence 9999999999999999999999999998 9999999974
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2.3e-07 Score=105.49 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEE---ec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNW--QRLWT---IS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~v~~---~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+++.++||+++++|+|..||+|.+|+-.+ ..-.+ ++ |..+|+++.|++||.+|.+|+..|.+-+|.+++++ ..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence 79999999999999999999999999754 11111 11 55789999999999999999999999999999988 33
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC---cccccceecccCCCe
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS---EDSFRELANSSHQRF 174 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~ 174 (763)
-+..-.++|..+.|+||+...+..- .|..+.+...... ....+.+|........ ..++. ...+.+++-
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~------~DNqI~li~~~dl--~~k~tIsgi~~~~~~~k~~~~~l~-t~~~idpr~ 357 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVL------EDNQIHLIKASDL--EIKSTISGIKPPTPSTKTRPQSLT-TGVSIDPRT 357 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEe------cCceEEEEeccch--hhhhhccCccCCCccccccccccc-eeEEEcCCC
Confidence 3444468999999999998776654 6887777654221 0001111111110000 00010 223345666
Q ss_pred eEEEEEcCCCcEEEEEc
Q 004298 175 SILCSGDKDGSICFNIF 191 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~ 191 (763)
+.++-.+..|.|.+|++
T Consensus 358 ~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDL 374 (792)
T ss_pred CceeecCCCceEEEEec
Confidence 78888899999999964
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.70 E-value=3.6e-08 Score=106.04 Aligned_cols=113 Identities=22% Similarity=0.384 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEcc---------Cc--------eE--EEec-----------CCCcEEEEEEc
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFN---------WQ--------RL--WTIS-----------PGKSVTSLCWR 70 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~---------~~--------~v--~~~~-----------~~~~V~~l~ws 70 (763)
..|+++.|-|.+ .++.++-.+|.+++|+.. ++ .+ |.-+ ....|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 469999999966 456667788999999751 01 00 0000 12368899999
Q ss_pred cCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 71 PDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 71 pDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|||++||+.+.||.+||+|..+.+++..++..-+...|++|+|||+++++|+ +|.-+.+|....
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------EDDLVtVwSf~e 363 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------EDDLVTVWSFEE 363 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC------CcceEEEEEecc
Confidence 9999999999999999999999888888887788999999999999999999 899999997654
No 202
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.70 E-value=9.2e-07 Score=99.31 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEE-EcCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVG-LEDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg-~~Dg--~V~lwdve~g~~ 95 (763)
.+...+|+|+|+.+|.++.+ ..|++|++...+...+ .....+.+.+|+|||+.|+.. ..++ .|++|++.+++.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 37888999999999987654 4799999954433333 344556789999999988754 3344 588899887754
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+|+++.++..+
T Consensus 271 -~~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 271 -TRLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred -EECCCCCCCCCCEEECCCCCEEEEEE
Confidence 34445555566789999998876554
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=9.6e-08 Score=98.86 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-------eEE--EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-------RLW--TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-------~v~--~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+-|.++.||.+++.||+|+.|..+.+|.+..- +|- .-.|...|.|++|....+++.+|..+|+|.+.|+++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 44899999999999999999999999998432 221 112557899999999999999999999999999999
Q ss_pred CeEEEEecccC---CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC-CC-cccCCcccccCCccccccee
Q 004298 93 GKLLRSLKSHT---VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PG-LVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 93 g~~~~~l~~h~---~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~-~~s~~~~~~~~~~~~~~~~~ 167 (763)
.+.+..+. |. +.|..+.-+|....+++.+ .++.+.|||.+...... +- .......|. ...
T Consensus 137 ~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t------~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~--------t~~ 201 (609)
T KOG4227|consen 137 KQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVT------RAKLVSFIDNRDRQNPISLVLPANSGKNFY--------TAE 201 (609)
T ss_pred ceeeeeec-ccCcccceeecccCCCCceEEEEe------cCceEEEEeccCCCCCCceeeecCCCccce--------eee
Confidence 99888774 44 4899999999888888777 89999999987532110 00 000001111 111
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+.+ ..-.+|++.+..|-+.+|+..+.
T Consensus 202 F~P-~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 202 FHP-ETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ecC-CCceeEEeccccCCCCceeeccc
Confidence 111 22357899999999999986653
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.68 E-value=6e-07 Score=91.42 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=88.1
Q ss_pred EEEEcCCC--CEEEE-EeCCCeEEEEEccCceE---EEe-cCCCcEEEEEEccCCCEEEEEEcCCc-EEEEEccCCeEEE
Q 004298 26 IAEWNPEK--DLLAM-ATEDSKILLHRFNWQRL---WTI-SPGKSVTSLCWRPDGKAIAVGLEDGT-ITLHDVENGKLLR 97 (763)
Q Consensus 26 ~l~~sP~~--~lLA~-~s~Dg~V~v~~l~~~~v---~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~-V~lwdve~g~~~~ 97 (763)
.++.+|.. .+||. |-.-|+|.|.++.+.+. ..+ .|...|.|++.+-+|..+|+++..|+ |||||.++|+.+.
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 34555644 45554 44558999999955544 334 38899999999999999999999998 6999999999999
Q ss_pred Eeccc--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SLKSH--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l~~h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++.. ...|.||+|+|+..+++.+| +-|++.+|.++.
T Consensus 219 E~RRG~d~A~iy~iaFSp~~s~LavsS------dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNSSWLAVSS------DKGTLHIFSLRD 257 (346)
T ss_pred eeecCCchheEEEEEeCCCccEEEEEc------CCCeEEEEEeec
Confidence 88743 36899999999999999998 889999997665
No 205
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.4e-06 Score=98.33 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=71.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg--~V~lwdve~g~~ 95 (763)
.+...+|+|+|+.||..+.+ ..|++|++.+.....+. ....+.+.+|+|||+.|+... .+| .|++||+.+++.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 37889999999999877644 36888898544433443 233456799999999888543 444 588889987765
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
. .+..+........|+|+|+.++..+
T Consensus 280 ~-~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred E-EcccCCCCcCCeEECCCCCEEEEEE
Confidence 3 4555566677889999998776544
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=2.5e-07 Score=100.42 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=107.8
Q ss_pred cceeEee-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--Cc--eEE---Ee-----cCCCcEEEEEEccCCCE
Q 004298 9 VLPFQLQ-FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN--WQ--RLW---TI-----SPGKSVTSLCWRPDGKA 75 (763)
Q Consensus 9 ~~~~~~~-~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~--~v~---~~-----~~~~~V~~l~wspDG~~ 75 (763)
+.+++++ |+.| |.|++..++++.+.+|+.||+|+.|++. .. -.+ .+ -|.++|+.+++|+.-..
T Consensus 335 epi~tfraH~gP----Vl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGP----VLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred eeeEEEecccCc----eEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 3445554 5555 9999999999999999999999999873 11 111 11 16789999999999999
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecc---c-------------------------------------------------C
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKS---H-------------------------------------------------T 103 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~---h-------------------------------------------------~ 103 (763)
|++++.||+|++|....... .++.. | .
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999998754333 11110 0 0
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC--CCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
..+..+.|.|++.+..++. +|+.|+++|...... ....+..+.+ .....+++-+|++|+
T Consensus 490 ~~in~vVs~~~~~~~~~~h------ed~~Ir~~dn~~~~~l~s~~a~~~svt-------------slai~~ng~~l~s~s 550 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAH------EDRSIRFFDNKTGKILHSMVAHKDSVT-------------SLAIDPNGPYLMSGS 550 (577)
T ss_pred CccceEEecCCCCeeEecc------cCCceecccccccccchheeeccceec-------------ceeecCCCceEEeec
Confidence 2344455566555555554 788888888765211 1111111111 223568889999999
Q ss_pred CCCcEEEEEcCc
Q 004298 182 KDGSICFNIFGI 193 (763)
Q Consensus 182 ~DG~I~lw~~~~ 193 (763)
.||.+.+|..+.
T Consensus 551 ~d~sv~l~kld~ 562 (577)
T KOG0642|consen 551 HDGSVRLWKLDV 562 (577)
T ss_pred CCceeehhhccc
Confidence 999999997544
No 207
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.66 E-value=6.5e-07 Score=97.59 Aligned_cols=155 Identities=29% Similarity=0.415 Sum_probs=115.6
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATE-DSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|..++|+|++..+++++. |+.+.+|+.. +..+..+. |...|.+++|+|+|. .+++++.|+.|++||..++..+.
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 45889999999998888885 9999999995 45666665 688999999999998 55555899999999998888888
Q ss_pred -EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 -SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 -~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+..|...+ ...|++++..+++++ .|+.+++|+........... .++ ...+..+ .+.+....
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~~~-~~~-------~~~v~~~--~~~~~~~~ 298 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDGSLLASGS------SDGTIRLWDLRSSSSLLRTL-SGH-------SSSVLSV--AFSPDGKL 298 (466)
T ss_pred eecCCCCcce-eEeECCCCCEEEEec------CCCcEEEeeecCCCcEEEEE-ecC-------CccEEEE--EECCCCCE
Confidence 688888775 448999997777776 89999999987643211100 111 1222222 23445667
Q ss_pred EEEEcCCCcEEEEEcCc
Q 004298 177 LCSGDKDGSICFNIFGI 193 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~ 193 (763)
+++++.|+.+++|+...
T Consensus 299 ~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 299 LASGSSDGTVRLWDLET 315 (466)
T ss_pred EEEeeCCCcEEEEEcCC
Confidence 77788889999996554
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.65 E-value=3e-07 Score=92.35 Aligned_cols=163 Identities=13% Similarity=0.217 Sum_probs=114.8
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCc-----eEEEecCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEcc
Q 004298 19 PVASQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQ-----RLWTISPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVE 91 (763)
Q Consensus 19 ~~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve 91 (763)
..+++++++.|+. +.+++.+++-|.+..||++..+ +---+.|.++|..|+|..+|. .||+.+.||.||++|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3445699999998 5689999999999999999433 223345999999999999664 88999999999999998
Q ss_pred CCeE---EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 92 NGKL---LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 92 ~g~~---~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
.-+. +..-..-..+...++|+++.. ++++-. .+...+.+.|++.+..+... ..+|.+ .++.+.
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-----~dS~~V~iLDiR~P~tpva~-L~~H~a-------~VNgIa 294 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-----MDSNKVVILDIRVPCTPVAR-LRNHQA-------SVNGIA 294 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhh-----cCCceEEEEEecCCCcceeh-hhcCcc-------cccceE
Confidence 5432 222222245778899998764 455432 24667888998864222211 223322 334566
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCcee
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
|.++.. +.+++++.|...-+|+....+
T Consensus 295 WaPhS~-~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 295 WAPHSS-SHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred ecCCCC-ceeeecCCcceEEEEeccccc
Confidence 776544 689999999999999976543
No 209
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.65 E-value=2.3e-07 Score=102.75 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=107.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-----RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~ 94 (763)
.|+.++|||++++|++++.|.++.+|..... +.-..+ |..-|.+..|+||+++||+++.|++|++|...++ +
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~ 653 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK 653 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh
Confidence 4999999999999999999999999997211 111122 6667899999999999999999999999999877 4
Q ss_pred EEEE--ecccCCceeEEEeecCC----C-ceeccCCCCCcccCCceeecCCCCCC-CCCCCccc--CCcccccCCccccc
Q 004298 95 LLRS--LKSHTVAVVCLNWEEDA----Q-PSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVS--GDTGFTDDSEDSFR 164 (763)
Q Consensus 95 ~~~~--l~~h~~~V~~l~ws~~~----~-~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s--~~~~~~~~~~~~~~ 164 (763)
.+.. ...+...|+.++|.|-. . .++.|- +.|.|.+|.....- ..-..... ......-.....++
T Consensus 654 ~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl------e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~ 727 (764)
T KOG1063|consen 654 YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL------EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN 727 (764)
T ss_pred hhhhhchhccCCceeeEEeeccccccccceEEEEe------cccEEEEEecccccccccceeeeeccccccccChHHhhh
Confidence 4433 23467899999998742 1 345554 88999998743100 00000000 00000001123444
Q ss_pred ceecccC--------CCeeEEEEEcCCCcEEEEEc
Q 004298 165 ELANSSH--------QRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 165 ~~~~~~~--------~~~~~L~sgs~DG~I~lw~~ 191 (763)
.+.|.+. .....|++|+.|.+++++.+
T Consensus 728 rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 728 RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred eeEeccccccccccccceeEEeeecccceeEEeec
Confidence 5555432 33456799999999998753
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.6e-07 Score=101.10 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=91.1
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec-ccCCceeEEEeecC--CCceeccCCCCCcccCCceeec
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK-SHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~-~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~w 136 (763)
|.++|+|+.|+.||.+|++|++|-.+.|||.-..|.++.+. +|...|.|+.|-|. ++.+++|+ .|+.|+++
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i~lf 122 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLIKLF 122 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceEEEE
Confidence 77899999999999999999999999999998888888874 79999999999984 46788887 89999999
Q ss_pred CCCCCCCCCCCcccCCcc-cccCCcccccceecccCCCe-eEEEEEcCCCcEEEEEcCc
Q 004298 137 PPAPRIPQMPGLVSGDTG-FTDDSEDSFRELANSSHQRF-SILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 137 d~~~~~~~l~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~-~~L~sgs~DG~I~lw~~~~ 193 (763)
|+.........+....+. ........++.+..+ +++ +++.++++||+|+-++++-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~--p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA--PNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecC--CCCCceEEEecCCcceeeecccC
Confidence 987421111111000000 000111223333333 333 7899999999999998665
No 211
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1.3e-06 Score=98.89 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC-C--eEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEE-EcCCc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED-S--KILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG-LEDGT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D-g--~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg-~~Dg~--V~lwdve~g~~ 95 (763)
.+....|||+|+.||..+.+ + .|++|++.+.....+.. .......+|+|||+.|+.. ..+|. |++||+++++.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 37789999999999876543 3 58888885443333322 2334578999999988764 55665 77788887765
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+||++.++..+
T Consensus 299 -~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 299 -TRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred -EECccCCCCccceEECCCCCEEEEEE
Confidence 44555556678899999999776554
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=4.6e-07 Score=104.46 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=126.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCC---eEEE
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENG---KLLR 97 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g---~~~~ 97 (763)
.-++|....-+|.++++-..|+|||. ..+.+.++. .+..|+++.-+- .|..|++|..||.|++||.+.. ..+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 45788886666666666788999999 455566665 345678776544 5799999999999999998743 3567
Q ss_pred EecccCCc--eeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 98 SLKSHTVA--VVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 98 ~l~~h~~~--V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+.|+.. |..+.+.++|- .+++|+ .+|.|++||++.......-....+. +..-.-.....+...
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs------~~G~I~~~DlR~~~~e~~~~iv~~~------~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGS------QDGDIQLLDLRMSSKETFLTIVAHW------EYGSALTALTVHEHA 1316 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeec------cCCeEEEEecccCcccccceeeecc------ccCccceeeeeccCC
Confidence 78889877 99999999875 488888 8999999999873111110000000 000000112245666
Q ss_pred eEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 175 SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.++++|+. +.|+||....-.++.+..... ..+... +++.+++|.|---.++++..|
T Consensus 1317 piiAsGs~-q~ikIy~~~G~~l~~~k~n~~----F~~q~~-------gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1317 PIIASGSA-QLIKIYSLSGEQLNIIKYNPG----FMGQRI-------GSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred CeeeecCc-ceEEEEecChhhhcccccCcc----cccCcC-------CCcceeeecchhHhhhhccCC
Confidence 79999998 999999876665555542211 011111 346789999964444444333
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.1e-07 Score=96.69 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=99.2
Q ss_pred EEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC
Q 004298 65 TSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ 144 (763)
Q Consensus 65 ~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~ 144 (763)
.+++|++||..+++|+.||++|+|+..+-..+.....|...|.++.|+|||+++++-+ .| ..++|+......-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig------~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG------AD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec------CC-ceEEEEeccCchh
Confidence 6799999999999999999999999887777777778999999999999999999887 56 8999998764111
Q ss_pred CCCc-ccCCcccccCCcccccceecccCC-CeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeecc
Q 004298 145 MPGL-VSGDTGFTDDSEDSFRELANSSHQ-RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNA 222 (763)
Q Consensus 145 l~~~-~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~ 222 (763)
.... .+....+. ..++...... ...+.+.-...|.|..|+.....-+.+- . .... .--+.
T Consensus 221 a~~t~~~k~~~~~------~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l--~--~~~~--------~~~~~ 282 (398)
T KOG0771|consen 221 ARKTPFSKDEMFS------SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL--R--LRKK--------IKRFK 282 (398)
T ss_pred hhcCCcccchhhh------hceecccCCCceEEEEEecCCCCceeEEEeeeecccccc--c--hhhh--------hhccC
Confidence 0000 11111111 1111111111 2233344445566776654433322110 0 0000 00123
Q ss_pred ceeeEEecCCCCEEEEEeecCc
Q 004298 223 SIYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 223 ~I~~v~~SpDg~~Llv~~~d~l 244 (763)
+|++++.|+||+++++++.++.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCc
Confidence 6899999999999999988763
No 214
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=2.6e-06 Score=95.71 Aligned_cols=99 Identities=16% Similarity=0.037 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCEEE---EEeCC--CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc-CC----cEEEEEccC
Q 004298 24 IKIAEWNPEKDLLA---MATED--SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DG----TITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA---~~s~D--g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg----~V~lwdve~ 92 (763)
+...+|||||+.++ +...+ ..|++.++.+.....+. ........+|+|||+.||..+. +| .+.+|++.+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 56789999997533 33333 35788888554333332 2234456899999999887663 23 344467665
Q ss_pred C---eEEEEecccCCceeEEEeecCCCceeccC
Q 004298 93 G---KLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g---~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+ +.......+........|+|||+.++..+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 3 33322322234457789999999777654
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.59 E-value=1.7e-07 Score=100.81 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc----------eEEEec--------------------------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ----------RLWTIS-------------------------------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~----------~v~~~~-------------------------------- 59 (763)
+.|.+-.|+|+|.-|.+++.||.|++|.-.|. .++...
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRA 184 (737)
T ss_pred hhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEec
Confidence 45888899999999999999999999996542 222211
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|.+-|.++.|+|....|++|+.|-..++||.. |..+..-..|+.+|++++|+|+ ..++.+|
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee
Confidence 34458999999999999999999999999966 7777777789999999999999 6666666
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=7.5e-06 Score=83.62 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=111.1
Q ss_pred cccccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec---CCCcEEEEEEccCCCEEEEE
Q 004298 5 EAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS---PGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 5 ~~~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~---~~~~V~~l~wspDG~~Lasg 79 (763)
+.+...+..+.+.++ |.++.+.+ +.|+++. .+.|.||.+ +-+++..+. +.+...+++=..+..+||.-
T Consensus 82 D~k~~~i~el~f~~~----I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 82 DLKERCIIELSFNSE----IKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cccCcEEEEEEeccc----eeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 344445556666666 88888875 4555554 678999998 344555443 22234444433355567665
Q ss_pred E-cCCcEEEEEccCCeE--EEEecccCCceeEEEeecCCCceeccCCCCCcccCCc-eeecCCCCC--CCCCCCcccCCc
Q 004298 80 L-EDGTITLHDVENGKL--LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT-SRFFPPAPR--IPQMPGLVSGDT 153 (763)
Q Consensus 80 ~-~Dg~V~lwdve~g~~--~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~-i~~wd~~~~--~~~l~~~~s~~~ 153 (763)
+ .-|.|.|.|+...+. ...+..|.+.|.|++.+.+|..+|++| ..|+ ||+||.... +..+.. |..
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS------tkGTLIRIFdt~~g~~l~E~RR---G~d 225 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS------TKGTLIRIFDTEDGTLLQELRR---GVD 225 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec------cCcEEEEEEEcCCCcEeeeeec---CCc
Confidence 5 679999999875444 467889999999999999999999998 5555 789998763 222111 110
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+.+ .+.+++++..+|+++|.-|++|++....
T Consensus 226 ------~A~i--y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 ------RADI--YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ------hheE--EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 1122 2345678889999999999999986443
No 217
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.56 E-value=3.3e-06 Score=95.81 Aligned_cols=211 Identities=18% Similarity=0.181 Sum_probs=123.8
Q ss_pred CeEEEEEcCCCC---EEEEEe-----------------CCCeEEEEEcc--CceEEEecCCCcEEEEEEcc-CCCEEEEE
Q 004298 23 QIKIAEWNPEKD---LLAMAT-----------------EDSKILLHRFN--WQRLWTISPGKSVTSLCWRP-DGKAIAVG 79 (763)
Q Consensus 23 ~V~~l~~sP~~~---lLA~~s-----------------~Dg~V~v~~l~--~~~v~~~~~~~~V~~l~wsp-DG~~Lasg 79 (763)
.+..+.|.|++. ..++.- .++.+.||++. .+.-..+.....|+|++|+| +...+|.|
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG 261 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG 261 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee
Confidence 377888888776 111111 12356777772 23334444567899999999 77888999
Q ss_pred EcCCcEEEEEccCCeE--EE----EecccCCceeEEEeecCCCc--eeccCCCCCcccCCceeecCCCCCCCCCCCcc--
Q 004298 80 LEDGTITLHDVENGKL--LR----SLKSHTVAVVCLNWEEDAQP--SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV-- 149 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~--~~----~l~~h~~~V~~l~ws~~~~~--l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~-- 149 (763)
+.+|.|.+||++.+.. .. ....|..+++.+.|..+-.- +++++ .||.+..|+++.-..+.....
T Consensus 262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s------sDG~i~~W~~~~l~~P~e~~~~~ 335 (555)
T KOG1587|consen 262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS------SDGSICSWDTDMLSLPVEGLLLE 335 (555)
T ss_pred ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe------cCCcEeeeeccccccchhhcccc
Confidence 9999999999987654 22 22368899999999876544 77777 799999997654211111100
Q ss_pred -cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEE-EEcCceeee--------eeeeccccc----------c-c
Q 004298 150 -SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF-NIFGIFPIG--------KINIHKFHV----------A-I 208 (763)
Q Consensus 150 -s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~l-w~~~~~~ig--------~~~i~~~~~----------~-~ 208 (763)
..+.+...........+.+.. .+-+.+++|+.+|.|.- ..-+..+.. .+.+|..+. . +
T Consensus 336 ~~~~~~~~~~~~~~~t~~~F~~-~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 336 SKKHKGQQSSKAVGATSLKFEP-TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred cccccccccccccceeeEeecc-CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 011000000111112222222 23357999999999986 221111111 111111111 1 1
Q ss_pred ccCCCCCceeeecc---------------ceeeEEecCCCCEEEEEee
Q 004298 209 PNADEQGTCRLLNA---------------SIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 209 ~s~~~~~~~~l~~~---------------~I~~v~~SpDg~~Llv~~~ 241 (763)
.+++ |-++++|+- .+++++|||--..++++..
T Consensus 415 ls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 415 LSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred eeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 2333 888999973 3889999998777776655
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=6.1e-07 Score=101.16 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEE--EccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC-CeEEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLH--RFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN-GKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~--~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~-g~~~~ 97 (763)
...++|+|+|+.|+.+. .+|.+.|| ++++..+..+. +...+.+..|+|||+.|+.++ .+|...||++.. +....
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 55789999999888765 57765555 55555555554 344578899999999887665 578888888753 22233
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+ .+.. .+..|+|+|+.++..+ .++ +..||......... .... . .....++++++.+
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~------~~~-i~~~Dl~~g~~~~l--t~~~---~--------~~~~~~sPdG~~i 386 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMIN------GDN-VVKQDLTSGSTEVL--SSTF---L--------DESPSISPNGIMI 386 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEc------CCC-EEEEECCCCCeEEe--cCCC---C--------CCCceECCCCCEE
Confidence 33 3333 5678999999888775 343 44577654211100 0000 0 0112356788899
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
+.++.+|.+.+|.
T Consensus 387 ~~~s~~g~~~~l~ 399 (429)
T PRK01742 387 IYSSTQGLGKVLQ 399 (429)
T ss_pred EEEEcCCCceEEE
Confidence 9999899888774
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.50 E-value=1.4e-07 Score=99.93 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|..+.|=|---+||+++..|.+...|+ .|+.|..+..+ +.+..++-+|-...+-+|..+|+|.+|.....+.+.++-
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 3888999999999999999999999998 78888887754 578888999988899999999999999999889998999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.|.++|.+|++.++|++.++.+ .|+.+++||++..
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRNF 325 (545)
T ss_pred hcCCCcceEEECCCCcEEeecc------cccceeEeeeccc
Confidence 9999999999999999999998 8999999999874
No 220
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.49 E-value=2e-05 Score=84.09 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-eEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS-KILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg-~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
++|....+.-+..-++.|+.|| .+-||+..+..+..+.. -+.|.++..+||||+++++.....+.+.|+++|+....=
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 4588888888888899999999 89999998888777764 478999999999999999999999999999999876655
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+...+-|+.+.|+|++++++-+-. ..+..+.|+++|+..
T Consensus 440 kS~~~lItdf~~~~nsr~iAYafP--~gy~tq~Iklydm~~ 478 (668)
T COG4946 440 KSEYGLITDFDWHPNSRWIAYAFP--EGYYTQSIKLYDMDG 478 (668)
T ss_pred ccccceeEEEEEcCCceeEEEecC--cceeeeeEEEEecCC
Confidence 566788999999999999887532 223456677776654
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=3.1e-06 Score=92.11 Aligned_cols=165 Identities=12% Similarity=0.112 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCeEEEEEccCceE----------EEe-------------c-------C---C----Cc
Q 004298 22 SQIKIAEWNPEKDL-LAMATEDSKILLHRFNWQRL----------WTI-------------S-------P---G----KS 63 (763)
Q Consensus 22 ~~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~~v----------~~~-------------~-------~---~----~~ 63 (763)
...+.+..+|||++ +|+|.....|++|+++.--+ .++ . | | -.
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R 131 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR 131 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee
Confidence 44778999999986 56788899999999842100 000 0 0 0 01
Q ss_pred ----EEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 64 ----VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 64 ----V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
-..++++.-..-|.+++....|+=++++.|..+..+....+.++++..++...++++|. .+|.+.+||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt------~~g~VEfwDpR 205 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT------EDGVVEFWDPR 205 (703)
T ss_pred cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc------cCceEEEecch
Confidence 23445444333355566666788889999999999888778999999999999999998 89999999998
Q ss_pred CCC--CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 140 PRI--PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 140 ~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
.+. ..+....+ ..... +...........+.+++--+++|+.+|.|.||++...
T Consensus 206 ~ksrv~~l~~~~~-v~s~p-g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 206 DKSRVGTLDAASS-VNSHP-GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred hhhhheeeecccc-cCCCc-cccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 741 11111101 00000 0011111123345566889999999999999987653
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.49 E-value=6.3e-07 Score=103.70 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=112.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE-Eeccc
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRFNW--QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR-SLKSH 102 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~-~l~~h 102 (763)
.+..+++.-++++|+.-+.|.+|+... ..+...-|.+.|.++.|+-||+++++.++|.++++|++++++... +.-+|
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 345677778899999999999999943 334334488999999999999999999999999999999988776 56689
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
.+.|+.+.+.|+ .+++++ +|.+.++|+.... +.....+.- ..+..+ ..++...+.++++
T Consensus 218 saRvw~~~~~~n--~i~t~g------edctcrvW~~~~~~l~~y~~h~g----------~~iw~~--~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVG------EDCTCRVWGVNGTQLEVYDEHSG----------KGIWKI--AVPIGVIIKVTGG 277 (967)
T ss_pred cceeEEEEeccc--eeEEec------cceEEEEEecccceehhhhhhhh----------cceeEE--EEcCCceEEEeec
Confidence 999999999998 788887 8999999966543 221111111 112222 2345667899999
Q ss_pred CCCcEEEEEc
Q 004298 182 KDGSICFNIF 191 (763)
Q Consensus 182 ~DG~I~lw~~ 191 (763)
.||.+++|++
T Consensus 278 ~Ds~lk~~~l 287 (967)
T KOG0974|consen 278 NDSTLKLWDL 287 (967)
T ss_pred cCcchhhhhh
Confidence 9999999964
No 223
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=2.1e-05 Score=88.00 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCE-EEEEeCC---CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEE---cCCcEEEEEccCCeE
Q 004298 24 IKIAEWNPEKDL-LAMATED---SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~l-LA~~s~D---g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve~g~~ 95 (763)
+....|+|+|+. ++..+.+ ..|+++++.+.+...+ ...+.+.+..|+|||+.++... .+..|.++|+.+++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 678999999984 6655444 4688888844433333 3445566788999999877654 245688888877764
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+|||+.++..+
T Consensus 270 -~~LT~~~~~d~~p~~SPDG~~I~F~S 295 (419)
T PRK04043 270 -TQITNYPGIDVNGNFVEDDKRIVFVS 295 (419)
T ss_pred -EEcccCCCccCccEECCCCCEEEEEE
Confidence 45554444345668999998776654
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=9.7e-06 Score=91.64 Aligned_cols=161 Identities=9% Similarity=0.007 Sum_probs=97.7
Q ss_pred CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 43 SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 43 g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
..|++++.+|.....+. +...+.+.+|+|||+.|+..+. +..|.+||+.+|+.. .+..+.+.+.+..|+|+|+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 36888888776655553 5668999999999999988763 468999999888653 455556678899999999876
Q ss_pred e-ccCCCCCcccCCc--eeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc-CCCcEEEEEcCc
Q 004298 119 K-NDFGNIPTYEDRT--SRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGI 193 (763)
Q Consensus 119 ~-s~s~~~~~~~d~~--i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~ 193 (763)
+ +.+ .++. +.+||.... ...+.. +.... ....++++++.|+..+ .+|...+|.++.
T Consensus 261 a~~~~------~~g~~~Iy~~d~~~~~~~~Lt~----~~~~~---------~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 261 VMSLS------QGGNTDIYTMDLRSGTTTRLTD----SPAID---------TSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred EEEEe------cCCCceEEEEECCCCceEEccC----CCCcc---------CceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 5 333 3444 555565542 111111 11100 1123456666666554 556555554331
Q ss_pred --eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 194 --FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 194 --~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
-....+. . ..+.+....|||||+.+++...
T Consensus 322 ~g~~~~~lt----------~--------~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 322 DGSNPRRIS----------F--------GGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred CCCCeEEee----------c--------CCCcccCeEECCCCCEEEEEEc
Confidence 1111110 0 0122445789999999988764
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=3.4e-06 Score=94.98 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=90.5
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC--eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcC-Cc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDS--KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED-GT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg--~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D-g~--V~lwdve~g~~ 95 (763)
.+..++|+|+|+.|+.. +.+| .|++|++.+..+..+. ....+....|+|||+.|+..+.+ |. |.++|+.+++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 35678999999988865 3344 5888898665555554 33467889999999999887754 44 44456666654
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+..+...+.+..|+|+|+.++..+... ....+.+||..... ..+.. .. . .....+++++
T Consensus 324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~---g~~~I~~~dl~~g~~~~Lt~---~~---~--------~~~p~~SpDG 385 (429)
T PRK03629 324 -QRITWEGSQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGGVQVLTD---TF---L--------DETPSIAPNG 385 (429)
T ss_pred -EEeecCCCCccCEEECCCCCEEEEEEccC---CCceEEEEECCCCCeEEeCC---CC---C--------CCCceECCCC
Confidence 34444445567889999999887654110 12346667765421 11110 00 0 0122355788
Q ss_pred eEEEEEcCCCc
Q 004298 175 SILCSGDKDGS 185 (763)
Q Consensus 175 ~~L~sgs~DG~ 185 (763)
..++.++.+|.
T Consensus 386 ~~i~~~s~~~~ 396 (429)
T PRK03629 386 TMVIYSSSQGM 396 (429)
T ss_pred CEEEEEEcCCC
Confidence 87888777765
No 226
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=9.7e-06 Score=92.63 Aligned_cols=111 Identities=10% Similarity=0.166 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
|.+++|+++|.+|.+|+..|.+.+|.+ ++++-+--.-+..|..+.|+||+...++...|+.|.+....+-+...++.+-
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence 999999999999999999999999999 5544333346789999999999999999999999999987665554444321
Q ss_pred -----------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 103 -----------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 103 -----------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+-.+.+..+|....++-.+ ..+.+.+||..+
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~------~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG------HPGHVQFYDLYT 376 (792)
T ss_pred cCCCccccccccccceeEEEcCCCCceeecC------CCceEEEEeccc
Confidence 23355667777433333333 677777777654
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.41 E-value=7.1e-07 Score=90.99 Aligned_cols=109 Identities=10% Similarity=0.194 Sum_probs=81.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEecccCC
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSLKSHTV 104 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l~~h~~ 104 (763)
++|||+|+++|+++.- .+.|-+.+.-.+..+ .--++|.-|.|+.|.-++ .+.+.|+.|.+|++...+...++....+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 7899999999998865 554444422111111 112568889999988765 4556899999999999998889988889
Q ss_pred ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 105 AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 105 ~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
++..++|+|+|+.+...+ ..+-.+.+|...++
T Consensus 93 gls~~~WSPdgrhiL~ts-----eF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTS-----EFDLRITVWSLNTQ 124 (447)
T ss_pred cceeeeECCCcceEeeee-----cceeEEEEEEeccc
Confidence 999999999997765544 16788999988764
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=6.2e-06 Score=92.90 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=96.2
Q ss_pred CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 43 SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 43 g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
..|++++.+|.....+ .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+|+... +....+.+.+..|+|||+.+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 3577777776654443 356678999999999999887743 459999999887643 33334567789999999877
Q ss_pred ec-cCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE-cCCCcEEEEEcCceee
Q 004298 119 KN-DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG-DKDGSICFNIFGIFPI 196 (763)
Q Consensus 119 ~s-~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg-s~DG~I~lw~~~~~~i 196 (763)
+. .+ .++...+|............ ..+.... ....++++++.|+.. ..+|...+|.++.-.
T Consensus 255 a~~~~------~~g~~~Iy~~d~~~~~~~~l-t~~~~~~---------~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~- 317 (427)
T PRK02889 255 AVALS------RDGNSQIYTVNADGSGLRRL-TQSSGID---------TEPFFSPDGRSIYFTSDRGGAPQIYRMPASG- 317 (427)
T ss_pred EEEEc------cCCCceEEEEECCCCCcEEC-CCCCCCC---------cCeEEcCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 64 44 56666666432211111100 0010000 112345666655544 456788888643211
Q ss_pred eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 197 GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 197 g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+... ..+... ......+|||||+++++.+.
T Consensus 318 g~~~-------~lt~~g--------~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 318 GAAQ-------RVTFTG--------SYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CceE-------EEecCC--------CCcCceEECCCCCEEEEEEc
Confidence 1110 000000 11235689999999987764
No 229
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=3.5e-05 Score=75.91 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE-ec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT-IS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~-~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.++-..|..+-+..++.|+.++-|++...++.. +. |.+.|.++.-+.....+.+|+.||++|+||.++++.+..+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 58999999998888888899999999995555544 43 77889999987766789999999999999999999988875
Q ss_pred ccC----------CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 101 SHT----------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 101 ~h~----------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
... ..|-+++- +...++.|+ ...+.+|.++..-+...-...++... ..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~--~edWlvCGg-------Gp~lslwhLrsse~t~vfpipa~v~~------------v~F 254 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-------GPKLSLWHLRSSESTCVFPIPARVHL------------VDF 254 (325)
T ss_pred cccChhhcCcccCceeEEEec--cCceEEecC-------CCceeEEeccCCCceEEEecccceeE------------eee
Confidence 422 23444443 345666664 56788888775211110000011000 111
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKI 199 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~ 199 (763)
.+ +.+++++....|.-|.++...-..+
T Consensus 255 ~~--d~vl~~G~g~~v~~~~l~Gvl~a~i 281 (325)
T KOG0649|consen 255 VD--DCVLIGGEGNHVQSYTLNGVLQANI 281 (325)
T ss_pred ec--ceEEEeccccceeeeeeccEEEEec
Confidence 12 3567777788888887665444444
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.36 E-value=9.5e-06 Score=82.95 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe
Q 004298 21 ASQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI 58 (763)
Q Consensus 21 ~~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~ 58 (763)
++++.+++|||+|+ +|.+...+-.|.||.++.++..-+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 35689999999995 555667788999999976654444
No 231
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.1e-05 Score=93.51 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEec----CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc-C---
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTIS----PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE-N--- 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~----~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve-~--- 92 (763)
-..+.|+|=.+.++++.+...|.||+....+. -.+. +...|+.+.+-. |..++.+|+.||.|+||+-- +
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 56788999999999998888999999944444 3444 346799998866 66799999999999999732 2
Q ss_pred -CeEEEEecc---c----CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccc
Q 004298 93 -GKLLRSLKS---H----TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 93 -g~~~~~l~~---h----~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~ 162 (763)
.+.+..+.+ + .+.-.-+.|.....++.+++ +-+.|++||..... ..++.. .+..
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG------d~r~IRIWDa~~E~~~~diP~~----------s~t~ 1210 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG------DVRSIRIWDAHKEQVVADIPYG----------SSTL 1210 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC------CeeEEEEEecccceeEeecccC----------CCcc
Confidence 234433221 1 12224467877665555555 68999999987631 122211 1111
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+..++. ....+++++.|..||.|++|+.++-
T Consensus 1211 vTaLS~-~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1211 VTALSA-DLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred ceeecc-cccCCceEEEeecCCceEEeecccC
Confidence 222222 2345799999999999999986654
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.34 E-value=5e-07 Score=95.96 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=127.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+-..|.++.|-.+.+++|++ ....++||+-+|..+..++....|..+.|-|.--+|++++..|.++--|+.+|+.+..
T Consensus 168 ~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~ 246 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS 246 (545)
T ss_pred ehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHH
Confidence 333457788887777777765 5778999999999999999888999999999988999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+....+.+..|.-+|-+..+-.|. ..|++.+|....+ +-++..+..+.. ..+.++++.+
T Consensus 247 ~~t~~G~~~vm~qNP~NaVih~Gh------snGtVSlWSP~skePLvKiLcH~g~V~-------------siAv~~~G~Y 307 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYNAVIHLGH------SNGTVSLWSPNSKEPLVKILCHRGPVS-------------SIAVDRGGRY 307 (545)
T ss_pred HHccCCccchhhcCCccceEEEcC------CCceEEecCCCCcchHHHHHhcCCCcc-------------eEEECCCCcE
Confidence 988788999999999888777776 7999999987653 222222222222 2236688999
Q ss_pred EEEEcCCCcEEEEEcCcee
Q 004298 177 LCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ 195 (763)
|++.+.|..++|||++.|.
T Consensus 308 MaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 308 MATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred EeecccccceeEeeecccc
Confidence 9999999999999988874
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=4.1e-06 Score=91.30 Aligned_cols=116 Identities=16% Similarity=0.283 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMA--TEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~--s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~ 96 (763)
++|+++.|+|++.-++++ -.=..+.||++++..++.+..| +=+++-|+|.|++|+.++- -|.|-+||+.+.+.+
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg-pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG-PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC-CccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 349999999999877764 4456899999999999998754 3467899999999998884 589999999999998
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++.. ..-+-+.|+|||.++.++......-.|+.+++|+...
T Consensus 350 ~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 350 AKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 88865 3456689999999998876443444588999998765
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=5.5e-06 Score=90.27 Aligned_cols=150 Identities=19% Similarity=0.318 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecC--------C----CcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP--------G----KSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--------~----~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
+.++++..||-..+||+|+.+|.|-.|+. ..+++..+.- + ..|+++.|+.||-.+++|..+|.|.||
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY 255 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence 45999999999999999999999999998 5555555531 1 249999999999999999999999999
Q ss_pred EccCCeEEEEec-ccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLK-SHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~-~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
|+++.+.+..-. +...+|..+.|.+.+ ..+++. +.+.+++||.....+-... +....++.
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-------Dk~~~kiWd~~~Gk~~asi----------Ept~~lND 318 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-------DKRILKIWDECTGKPMASI----------EPTSDLND 318 (703)
T ss_pred EcccCCceeecccCCccceeeecccccCCCceEEec-------chHHhhhcccccCCceeec----------cccCCcCc
Confidence 999887765432 234689999998763 445555 5788999997652111000 00111222
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEE
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
+ |+-++.-++.++-.++.++.|.
T Consensus 319 ~--C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 319 F--CFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred e--eeecCCceEEEecCCCcceeEE
Confidence 2 2334555777888887777654
No 235
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.29 E-value=2.7e-06 Score=84.58 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=106.9
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCeEEEEEccC-ceEEEec-----------CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNPE-K--DLLAMATEDSKILLHRFNW-QRLWTIS-----------PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP~-~--~lLA~~s~Dg~V~v~~l~~-~~v~~~~-----------~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
+-|.+..|.-+ + -+++.|-++|.|.+|+++. .++..++ |.++|.++.+.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 44777775432 2 3566688899999999944 3433332 678899999998655668888888898
Q ss_pred EEEccC--CeEEE--EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC--CCCCCCCcccCCcccccCCc
Q 004298 87 LHDVEN--GKLLR--SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP--RIPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 87 lwdve~--g~~~~--~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~--~~~~l~~~~s~~~~~~~~~~ 160 (763)
.|++.. |.+.. .+...+-.|..+..-||++.+++++ +|+.+|+|..++ ++..+..|..+...
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~------ 298 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNA------ 298 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeE------
Confidence 998863 43321 2223345788899999999999999 999999976654 34445444433222
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
.+++++-++|+.++.|++|.+|.
T Consensus 299 -------vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 299 -------VAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred -------EEeCCCCchhhhccCCceEEeee
Confidence 34567778999999999999996
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.26 E-value=9.5e-06 Score=94.21 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=110.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEecCCCcE-----EEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTISPGKSV-----TSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~~~~~V-----~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++.|....+.-+..++++++.++.+.+|+.+... +..+.++..+ .-+..+++.-++++|+.-|.|.+|+...-
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 34455555566677889999999999999995544 4455555432 23456677779999999999999997622
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+.-..+.+|.+.|..+.|+.+|+++++.| +|+++|+|++...- .+..+.-+|+.-+ ...++.++
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~S------dDRsiRlW~i~s~~-~~~~~~fgHsaRv---------w~~~~~~n 229 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVS------DDRSIRLWPIDSRE-VLGCTGFGHSARV---------WACCFLPN 229 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEe------cCcceeeeeccccc-ccCccccccccee---------EEEEeccc
Confidence 22236889999999999999999999999 99999999987631 1111222333322 23344455
Q ss_pred eeEEEEEcCCCcEEEEE
Q 004298 174 FSILCSGDKDGSICFNI 190 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~ 190 (763)
.+++++.|.+.++|.
T Consensus 230 --~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWG 244 (967)
T ss_pred --eeEEeccceEEEEEe
Confidence 899999999999994
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.26 E-value=7e-05 Score=91.26 Aligned_cols=104 Identities=25% Similarity=0.418 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----------------------CC---C---------
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----------------------PG---K--------- 62 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----------------------~~---~--------- 62 (763)
..+.++|.+++||||+.++|.++.+++|.+..-++..+.... || +
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 344567999999999999999999999988776655443321 11 0
Q ss_pred --------------cEEEEEEccCCCEEEEEEc---C---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 63 --------------SVTSLCWRPDGKAIAVGLE---D---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 63 --------------~V~~l~wspDG~~Lasg~~---D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.-..|+|+.||+++|+.+- + ..+|+|+-+ |+...+-..-.+--.+++|.|.|.++++..
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 1246899999999999884 3 478999955 776554433334456789999999998864
No 238
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=1.1e-05 Score=83.89 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=102.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC------CeEEEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN------GKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~------g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
|.++|++|.|+.+|++||+|+.|..+++|.++. .+.+.... .|.+.|.|+.|...++++.+|+ .+++
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~~ 128 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWGT 128 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------Ccce
Confidence 678999999999999999999999999999863 34444432 3568999999999999999998 8999
Q ss_pred eeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccC
Q 004298 133 SRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNA 211 (763)
Q Consensus 133 i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~ 211 (763)
+..-|+.++...-...-....+- + .....+|..+++++.+.+|.|.+|+..-.+ -+..-...
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~-------V--Y~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-------- 191 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGD-------V--YHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-------- 191 (609)
T ss_pred eEeeecccceeeeeecccCcccc-------e--eecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec--------
Confidence 99988876421110000000001 1 112334567899999999999999866543 12111100
Q ss_pred CCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 212 DEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 212 ~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.. ....+++.|.|.--.|+++..
T Consensus 192 -N~------~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 192 -NS------GKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred -CC------CccceeeeecCCCceeEEecc
Confidence 00 023557788888777776643
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=2.2e-05 Score=88.72 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCEEEE-EeCCC--eEEEEEccCceEEEecCC-CcEEEEEEccCCCEEEEEEc-CCc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAM-ATEDS--KILLHRFNWQRLWTISPG-KSVTSLCWRPDGKAIAVGLE-DGT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~-~s~Dg--~V~v~~l~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~-Dg~--V~lwdve~g~~ 95 (763)
....++|+|+|+.++. .+.+| .|++|++.+..+..+... ......+|+|||+.|+.++. +|. |.++++.+++.
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3557899999998764 44555 588999866656555433 34567899999999988774 444 66667766664
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+..+.......+|+|+|+.++..+.. .....+.+|+...
T Consensus 329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~---~~~~~I~v~d~~~ 369 (433)
T PRK04922 329 E-RLTFQGNYNARASVSPDGKKIAMVHGS---GGQYRIAVMDLST 369 (433)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEECC---CCceeEEEEECCC
Confidence 3 333333445678999999988765311 0123578888754
No 240
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=1.4e-05 Score=82.40 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred CCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEc-cCceE----EEecCCCcEEEEEEccCCCEEEEEE----cCCcEE
Q 004298 18 KPVASQIKIAEWNP--EKDLLAMATEDSKILLHRF-NWQRL----WTISPGKSVTSLCWRPDGKAIAVGL----EDGTIT 86 (763)
Q Consensus 18 k~~~~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~~~v----~~~~~~~~V~~l~wspDG~~Lasg~----~Dg~V~ 86 (763)
|..|..+..++|.. ..+.+.+++.||+|++|++ ..+++ |+-.++..-.|++-+-.++.+++|. .|-.|.
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~ 146 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV 146 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence 34455677777765 5688999999999999999 32332 3333556778888887888999987 577899
Q ss_pred EEEccCCeE-EEE-ecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccc
Q 004298 87 LHDVENGKL-LRS-LKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 87 lwdve~g~~-~~~-l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~ 163 (763)
+||++..+. ++. ...|...|+++.|+|.. ..+++|| -||-+.+||+...-.. ... ...+ ....++
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS------vDGLvnlfD~~~d~Ee-DaL---~~vi--N~~sSI 214 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS------VDGLVNLFDTKKDNEE-DAL---LHVI--NHGSSI 214 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec------ccceEEeeecCCCcch-hhH---HHhh--ccccee
Confidence 999997655 555 45799999999999976 5788898 8999999998753110 000 0000 011223
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
-.+.|.. +..+.+.+-+..++..+|..
T Consensus 215 ~~igw~~-~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 215 HLIGWLS-KKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred eeeeeec-CCcceEEEEEccCceeEEEc
Confidence 3334432 33334555677788888863
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2.1e-05 Score=82.34 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=117.4
Q ss_pred CeEEEEEcCCC-CEEEEEeCC--CeEEEEEc-cCceEEEecC--C--------CcEEEEEEccC--CCEEEEEEcCCcEE
Q 004298 23 QIKIAEWNPEK-DLLAMATED--SKILLHRF-NWQRLWTISP--G--------KSVTSLCWRPD--GKAIAVGLEDGTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~D--g~V~v~~l-~~~~v~~~~~--~--------~~V~~l~wspD--G~~Lasg~~Dg~V~ 86 (763)
++..+.=+|.. ..+|+|+.. ..+.+|++ ..+++|..++ + -+++++.|-|. ...||++..-+.|+
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 46677777765 455668887 78999999 6789998862 2 24788999997 88999999999999
Q ss_pred EEEccCC-eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-ccCCcccccCCccccc
Q 004298 87 LHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-VSGDTGFTDDSEDSFR 164 (763)
Q Consensus 87 lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-~s~~~~~~~~~~~~~~ 164 (763)
+||...+ +++.++..-+.+|+++.-.|.+.++.+|. .-+.+..||.+.. .+.+. ..+.++.+ .
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn------~~g~l~~FD~r~~--kl~g~~~kg~tGsi-------r 294 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN------TKGQLAKFDLRGG--KLLGCGLKGITGSI-------R 294 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEEEEec------ccchhheecccCc--eeeccccCCccCCc-------c
Confidence 9999865 56778887789999999999999999987 6788888998864 22221 22222222 2
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+ ..++...++++++-|..++|++...
T Consensus 295 si--h~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 295 SI--HCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eE--EEcCCCceEEeeccceeEEEeeccc
Confidence 22 3457778999999999999998655
No 242
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.19 E-value=2e-05 Score=92.79 Aligned_cols=173 Identities=9% Similarity=-0.033 Sum_probs=108.2
Q ss_pred EEccCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC--Ce-----EEEEecccCCceeEEEeecCCCce
Q 004298 48 HRFNWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN--GK-----LLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 48 ~~l~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~--g~-----~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
|+..|..|..+. |...|..++-++ ++.+|++|+.||+|++|+... |+ ...++....+.+.++...+++..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 666666666665 666777888776 559999999999999999762 21 222333346789999999999999
Q ss_pred eccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCccccccee-cccCCCeeEEEEEcCCCcEEEEEcCceee
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELA-NSSHQRFSILCSGDKDGSICFNIFGIFPI 196 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~L~sgs~DG~I~lw~~~~~~i 196 (763)
+.++ .||.+++..+... ........ ...........+-.+. +.......+++.++..+.|..|+.++...
T Consensus 1114 Av~t------~DG~v~~~~id~~~~~~~~~~~--~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1114 AVST------KDGSVRVLRIDHYNVSKRVATQ--VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred EEEc------CCCeEEEEEccccccccceeee--eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 8887 8999999877642 11110000 0000000000111111 11112224888999999999999776432
Q ss_pred eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 197 GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 197 g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.... ...+-+|.|++++.+|-++.++++++.+
T Consensus 1186 ~w~l---------------k~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1186 AWRL---------------KNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred HHhh---------------hcCccccceeEEEecCCceEEEEecCCc
Confidence 2210 0112236789999999999998887765
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.18 E-value=6.8e-06 Score=99.58 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=130.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.++.=+|...+.++|+.||.|++|.. .++.+.... ...+|+.+.|+.+|..+.++..||.+.+|.+. .+.....
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 3888999999999999999999999998 777776665 33689999999999999999999999999987 6777778
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
+.|+...+...|-. ..+++.+. ..+++.+.+||..-+.....-+ ..|..-+ .....-|+..+|++
T Consensus 2289 qchnk~~~Df~Fi~--s~~~tag~---s~d~~n~~lwDtl~~~~~s~v~-~~H~~ga---------T~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG--SLLATAGR---SSDNRNVCLWDTLLPPMNSLVH-TCHDGGA---------TVLAYAPKHQLLIS 2353 (2439)
T ss_pred ccCCccccceeeee--hhhhcccc---CCCCCcccchhcccCcccceee-eecCCCc---------eEEEEcCcceEEEe
Confidence 88988888888875 44555431 2378999999976431111111 1111111 12234577889999
Q ss_pred EcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeec
Q 004298 180 GDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
|+.+|.|++|+...- .++.++.......+.+++..|.+++|.
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEE
Confidence 999999999986542 233443322222344566667777776
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.16 E-value=0.0001 Score=82.66 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=63.4
Q ss_pred eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|.+++.++.....+. ++..+.+.+|+|||+.|+.+..+ ..|++||+.+++... +..+...+.++.|+|+++.++
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEE
Confidence 5777777655444443 55568899999999999988744 479999999886543 334456677899999998665
Q ss_pred c-cCCCCCcccCCceeecCCCC
Q 004298 120 N-DFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 120 s-~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+. ..+..+.+|+...
T Consensus 250 ~~~~~----~~~~~i~~~d~~~ 267 (417)
T TIGR02800 250 VSLSK----DGNPDIYVMDLDG 267 (417)
T ss_pred EEECC----CCCccEEEEECCC
Confidence 3 320 0233566777654
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.13 E-value=2e-05 Score=81.17 Aligned_cols=204 Identities=13% Similarity=0.155 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce--EEEec-----C------------CCcEEEEEEccCCC--EEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR--LWTIS-----P------------GKSVTSLCWRPDGK--AIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~--v~~~~-----~------------~~~V~~l~wspDG~--~Lasg~ 80 (763)
+-|.++.|+-+|++||+|..+|.|.+|.-+... .+.+. | ..+|..++|.++|. .+....
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 348899999999999999999999988762111 22221 2 24689999999765 677888
Q ss_pred cCCcEEEEEccCCeEEE---------------Ee---------------------cccCCceeEEEeecCCCceeccCCC
Q 004298 81 EDGTITLHDVENGKLLR---------------SL---------------------KSHTVAVVCLNWEEDAQPSKNDFGN 124 (763)
Q Consensus 81 ~Dg~V~lwdve~g~~~~---------------~l---------------------~~h~~~V~~l~ws~~~~~l~s~s~~ 124 (763)
.|.+|++|-+....... ++ .+|.-.|.+|+++.|+..+.++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA--- 182 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA--- 182 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec---
Confidence 99999999876321110 00 1477789999999999988887
Q ss_pred CCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC-eeEEEEEcCCCcEEEEEcCceeeeee--ee
Q 004298 125 IPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR-FSILCSGDKDGSICFNIFGIFPIGKI--NI 201 (763)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~ig~~--~i 201 (763)
+|=.|.+|++.-.-.... ...-...-..+...-+.. ..++|. -++++-.++.|+|++.+.+..-...- .+
T Consensus 183 ----DdLRINLWnlei~d~sFn-IVDIKP~nmEeLteVITs--aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 183 ----DDLRINLWNLEIIDQSFN-IVDIKPANMEELTEVITS--AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ----cceeeeeccccccCCcee-EEEccccCHHHHHHHHhh--hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 588889997653111000 000000000000111111 123332 36888889999999998663211110 00
Q ss_pred cccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 202 HKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 202 ~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
...+......+ -+.---.+|.++.||++|++++.
T Consensus 256 fEepedp~~rs---ffseiIsSISDvKFs~sGryils 289 (433)
T KOG1354|consen 256 FEEPEDPSSRS---FFSEIISSISDVKFSHSGRYILS 289 (433)
T ss_pred hccccCCcchh---hHHHHhhhhhceEEccCCcEEEE
Confidence 01010100000 00001157899999999999875
No 246
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.12 E-value=1.7e-06 Score=97.52 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
-..|.|..|...|.++++|++|..|+||.++++.++...++|.+.|+.++.+.++..++++| .|..|++|....
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS------~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS------NDKVIRVWRLPD 263 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc------cCceEEEEecCC
Confidence 34599999999999999999999999999999999999999999999999999999999998 899999998776
Q ss_pred CCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 141 RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 141 ~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
..+ .....+|++.++ .+ .++|.. +.+.||++++|+++
T Consensus 264 ~~p--vsvLrghtgavt-------ai--afsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 264 GAP--VSVLRGHTGAVT-------AI--AFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred Cch--HHHHhcccccee-------ee--ccCccc----cCCCCCceEecccc
Confidence 321 122345555441 12 233332 66789999999876
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.10 E-value=0.0001 Score=86.98 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=97.4
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEc---cCc-eEE----Eec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-
Q 004298 24 IKIAEWNP-EKDLLAMATEDSKILLHRF---NWQ-RLW----TIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN- 92 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~V~v~~l---~~~-~v~----~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~- 92 (763)
|..++.++ ++.++++|+.||+|++|++ .+. ... +.. .+.++.++..-+.|..+|+|+.||.|++.+++-
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 55666555 5699999999999999998 232 111 222 567899999999999999999999999999874
Q ss_pred -Ce-----EEEEeccc-CCceeEE-EeecCC-C-ceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCc
Q 004298 93 -GK-----LLRSLKSH-TVAVVCL-NWEEDA-Q-PSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 93 -g~-----~~~~l~~h-~~~V~~l-~ws~~~-~-~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~ 160 (763)
++ ..+....+ .+.+.+| ++.... . .++.+. ..+.+..||.+.. ...+.. ....+.+
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T------~~~~iv~~D~r~~~~~w~lk~--~~~hG~v---- 1198 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT------DLSRIVSWDTRMRHDAWRLKN--QLRHGLV---- 1198 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEE------eccceEEecchhhhhHHhhhc--Cccccce----
Confidence 21 22222222 2333333 343222 2 233333 5778889998763 111111 0111111
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+.+.++.++.+++|+..|.+-+||.+.
T Consensus 1199 -----TSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1199 -----TSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred -----eEEEecCCceEEEEecCCceEEEEEeec
Confidence 2234567778999999999999999764
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.09 E-value=0.00019 Score=78.88 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCEEEE-EeCCCeEEEEEc-cCceEEEecCCCcE-EEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEE
Q 004298 33 KDLLAM-ATEDSKILLHRF-NWQRLWTISPGKSV-TSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCL 109 (763)
Q Consensus 33 ~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~~~V-~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l 109 (763)
++++++ -..+++|.|.+. +.+.+..+..+..+ ..+.++|||+++.+++.||.|.++|+.+++.+.+++.. ....++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence 456654 456799999999 56677888766555 45789999999999999999999999999999999764 456889
Q ss_pred EeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 110 NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 110 ~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++++||++++++. +.++.+.++|..+
T Consensus 84 ~~s~DG~~~~v~n-----~~~~~v~v~D~~t 109 (369)
T PF02239_consen 84 AVSPDGKYVYVAN-----YEPGTVSVIDAET 109 (369)
T ss_dssp EE--TTTEEEEEE-----EETTEEEEEETTT
T ss_pred EEcCCCCEEEEEe-----cCCCceeEecccc
Confidence 9999999998775 5789999998765
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=2.2e-05 Score=82.28 Aligned_cols=115 Identities=20% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 20 VASQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 20 ~~~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+|-+++.+.|-|. ...+|+++.-++|++|+..-| ++..+. -...++++..-|+|++|.+|..-|.+..+|.+.++
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 3455778889887 789999999999999999433 456665 34678999999999999999999999999999999
Q ss_pred EEEE-ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRS-LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~-l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.... +++..+.|++|..+|.++++++++ -|+.+|++|..+
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~kt 321 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKT 321 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeeccc
Confidence 8876 888889999999999999999999 899999999876
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0001 Score=81.21 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=91.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
.++.|.++.|+.+-..|-+++.|+.+..|.....++..+. ....+.+++.+|||+.+++|+ +.|++||+++++.+.
T Consensus 101 h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 101 HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE
Confidence 3567999999999999999999999999999665555543 235689999999999999886 789999999999999
Q ss_pred EecccCCceeEEEeecC-----CCceeccCCCCCcccCCceeecCCC
Q 004298 98 SLKSHTVAVVCLNWEED-----AQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~-----~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+|.+|.++|.++.|..+ |.++.++.. ..+-+.+|-..
T Consensus 179 ~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~ 220 (541)
T KOG4547|consen 179 TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVE 220 (541)
T ss_pred EecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEE
Confidence 99999999999999877 555554421 35556666433
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.00039 Score=84.89 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=123.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc----cCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF----NWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l----~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.++.+-++.+-+..+..+|.|.+++. ....+-.+ .-...|.|++||||+..||....+|++.+++ .+.+.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEE
Confidence 57999999999999999999999988843 22222111 1235699999999999999999999998875 222222
Q ss_pred EEec------------------------c------------------------cCCceeEEEeecCCCceeccCCCCCcc
Q 004298 97 RSLK------------------------S------------------------HTVAVVCLNWEEDAQPSKNDFGNIPTY 128 (763)
Q Consensus 97 ~~l~------------------------~------------------------h~~~V~~l~ws~~~~~l~s~s~~~~~~ 128 (763)
.... | +...-..|+|-.||.+++..+-.....
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 2111 0 122345788999999988765211111
Q ss_pred cCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcC---CCcEEEEEcCceeeeeeeecccc
Q 004298 129 EDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDK---DGSICFNIFGIFPIGKINIHKFH 205 (763)
Q Consensus 129 ~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~---DG~I~lw~~~~~~ig~~~i~~~~ 205 (763)
.-+.+|+|+-...+.. ......+.. -..++.|.|+++++... .-.|.+|.-....-|.+.+.-.+
T Consensus 235 ~~R~iRVy~ReG~L~s---tSE~v~gLe---------~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 235 SRRVIRVYSREGELQS---TSEPVDGLE---------GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDP 302 (928)
T ss_pred ceeEEEEECCCceEEe---ccccCCCcc---------CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCC
Confidence 2478999987753221 111111111 12245678888888764 34455665455566666543200
Q ss_pred cccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 206 VAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
. ...|..++|++|+..|++...+.
T Consensus 303 -------~-------~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 303 -------E-------EEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred -------C-------CceeeEEEECCCCCEEEEEecCC
Confidence 0 12467899999999999977543
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.01 E-value=0.0017 Score=71.05 Aligned_cols=203 Identities=16% Similarity=0.151 Sum_probs=114.7
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEccC-ceEEE----ec-----------CCCcEEEEEEccCCCEEEEEE-cCCc
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRFNW-QRLWT----IS-----------PGKSVTSLCWRPDGKAIAVGL-EDGT 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~~-~~v~~----~~-----------~~~~V~~l~wspDG~~Lasg~-~Dg~ 84 (763)
....++.+|++++++++.. +|.|.+++++. ..+-. +. .+....++.|+|||+++++.. ....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 3567899999999998874 78999999943 22221 11 234578999999999888876 5568
Q ss_pred EEEEEccCCe--EE--EEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc--ccCC-cccc
Q 004298 85 ITLHDVENGK--LL--RSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL--VSGD-TGFT 156 (763)
Q Consensus 85 V~lwdve~g~--~~--~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~--~s~~-~~~~ 156 (763)
|.+|++.... .. ..+. .......++.|+|+++++.... ..++++.+++..+....+... .... ..+.
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-----ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-----CCCCcEEEEeecccCCceeEEEEeeecccccc
Confidence 9999997654 32 2232 2246789999999998765443 146667776555211110000 0000 0000
Q ss_pred cCCcccccceecccCCCeeEEEE-EcCCCcEEEEEcCc----e-eeeeeeecccccccccCCCCCceeeeccceeeEEec
Q 004298 157 DDSEDSFRELANSSHQRFSILCS-GDKDGSICFNIFGI----F-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS 230 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~s-gs~DG~I~lw~~~~----~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S 230 (763)
.......+ ..++++++|.+ ....+.|.++..+. . .++.++ +++ ..-..++++
T Consensus 243 --~~~~~~~i--~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~---------~~G---------~~Pr~~~~s 300 (345)
T PF10282_consen 243 --GENAPAEI--AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP---------TGG---------KFPRHFAFS 300 (345)
T ss_dssp --SSSSEEEE--EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE---------ESS---------SSEEEEEE-
T ss_pred --ccCCceeE--EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe---------CCC---------CCccEEEEe
Confidence 00011112 23455655544 44667788887632 1 122221 111 114578999
Q ss_pred CCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 231 KDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 231 pDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
|||++|+++..++ ..+.++.+|
T Consensus 301 ~~g~~l~Va~~~s-----------~~v~vf~~d 322 (345)
T PF10282_consen 301 PDGRYLYVANQDS-----------NTVSVFDID 322 (345)
T ss_dssp TTSSEEEEEETTT-----------TEEEEEEEE
T ss_pred CCCCEEEEEecCC-----------CeEEEEEEe
Confidence 9999999987654 356666665
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0003 Score=79.41 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=62.5
Q ss_pred eEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|.+++.+|.....+ .++..+....|+|||+.|+..+.+ ..|.+|++.+|+... +....+.+....|+|+|+.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 477777777655554 456678999999999999877643 368999998886543 333344566789999998776
Q ss_pred c-cCCCCCcccCCceeecCCCC
Q 004298 120 N-DFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 120 s-~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+.+ .+..+.++|...
T Consensus 259 ~~~~~~----g~~~Iy~~d~~~ 276 (430)
T PRK00178 259 FVLSKD----GNPEIYVMDLAS 276 (430)
T ss_pred EEEccC----CCceEEEEECCC
Confidence 3 3200 123466667654
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.00 E-value=0.00028 Score=77.57 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEEeccc-
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRSLKSH- 102 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~l~~h- 102 (763)
.+.++||++++.+++.||.|.++++ +++.+..+..|....+++++|||+++++++ .++.+.++|.++.+.++.+...
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 4679999999999999999999999 788888999999999999999999998876 7999999999999999887643
Q ss_pred ------CCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCC
Q 004298 103 ------TVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 103 ------~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~ 140 (763)
...+..+.-++....++ +.- +.+.+-+.|...
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lk------d~~~I~vVdy~d 159 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLK------DTGEIWVVDYSD 159 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEET------TTTEEEEEETTT
T ss_pred ccccccCCCceeEEecCCCCEEEEEEc------cCCeEEEEEecc
Confidence 24677777778777443 332 335555555443
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.00 E-value=4e-05 Score=80.74 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc--cC--ceEEEecC-CCcEEEEEEccCCCEEEEEE---cCCcEEEEEccCCeE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF--NW--QRLWTISP-GKSVTSLCWRPDGKAIAVGL---EDGTITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~--~~v~~~~~-~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve~g~~ 95 (763)
+..+..+|.+.++|++..+....++.. +. -+.+.... ...-+++.|-.+.....++- +...+.+|.+..+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 556778999999999998888666665 32 23333321 23345566665555555554 445556666655554
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.- +-+|-+.++.++|+||++++.++. .|..||+-..... ....+-..||+.|+. .+. . .+..
T Consensus 145 ~~-~lGhvSml~dVavS~D~~~IitaD------RDEkIRvs~ypa~-f~IesfclGH~eFVS-------~is--l-~~~~ 206 (390)
T KOG3914|consen 145 EP-ILGHVSMLLDVAVSPDDQFIITAD------RDEKIRVSRYPAT-FVIESFCLGHKEFVS-------TIS--L-TDNY 206 (390)
T ss_pred ch-hhhhhhhhheeeecCCCCEEEEec------CCceEEEEecCcc-cchhhhccccHhhee-------eee--e-ccCc
Confidence 43 348999999999999999999997 8999988543321 122233346666661 121 1 2223
Q ss_pred EEEEEcCCCcEEEEEcCce
Q 004298 176 ILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~ 194 (763)
.|++|+.|+++++|++...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred eeeecCCCCcEEEEecccC
Confidence 5899999999999997664
No 256
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=5.1e-05 Score=84.10 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=67.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
|+++.|.+++++|+.+.++.|+.||+|.+|+.+.+.....+..-.++.++|+|+|.++++|+.-|.+.+||+.-+.+...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 66677999999999999999999999999999655444444555678999999999999999999999999875544433
Q ss_pred e
Q 004298 99 L 99 (763)
Q Consensus 99 l 99 (763)
+
T Consensus 337 L 337 (545)
T PF11768_consen 337 L 337 (545)
T ss_pred e
Confidence 3
No 257
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.98 E-value=0.0018 Score=70.87 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCEEEEEeC----CCeEEEEEccCc--eE---EEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATE----DSKILLHRFNWQ--RL---WTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~----Dg~V~v~~l~~~--~v---~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~ 92 (763)
...++++|++++|.++.. ++.|..|+++.. .+ -... .+.....++.+|||++|+++. .+|.|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 567899999999888776 478999999442 33 2333 566777899999999998887 799999999976
Q ss_pred -CeEEEE---ec----------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 93 -GKLLRS---LK----------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 93 -g~~~~~---l~----------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
|.+... +. .......++.|+|+++++.... .....|.+|+.......+... ......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~----~~~~~~ 189 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-----LGADRVYVYDIDDDTGKLTPV----DSIKVP 189 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-----TTTTEEEEEEE-TTS-TEEEE----EEEECS
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCceEEEe----eccccc
Confidence 554433 21 1124678999999999776643 134567777665432111100 000000
Q ss_pred CcccccceecccCCCeeEE-EEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 159 SEDSFRELANSSHQRFSIL-CSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
....-..+ .++++++++ ++.-.+++|.++.++.. .|.+...+.....+. +..+. .....+.+||||++|+
T Consensus 190 ~G~GPRh~--~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~-~~~~~-----~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 190 PGSGPRHL--AFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPE-GFTGE-----NAPAEIAISPDGRFLY 260 (345)
T ss_dssp TTSSEEEE--EE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCET-TSCSS-----SSEEEEEE-TTSSEEE
T ss_pred cCCCCcEE--EEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccc-ccccc-----CCceeEEEecCCCEEE
Confidence 00111112 244555444 55567888998876610 111111100000000 00000 1345789999999999
Q ss_pred EEeec
Q 004298 238 VLCSG 242 (763)
Q Consensus 238 v~~~d 242 (763)
++..+
T Consensus 261 vsnr~ 265 (345)
T PF10282_consen 261 VSNRG 265 (345)
T ss_dssp EEECT
T ss_pred EEecc
Confidence 98664
No 258
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.98 E-value=1.7e-05 Score=56.58 Aligned_cols=36 Identities=39% Similarity=0.700 Sum_probs=31.7
Q ss_pred eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 54 RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 54 ~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.+..+. |...|++++|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 445554 778999999999999999999999999997
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0022 Score=67.23 Aligned_cols=199 Identities=15% Similarity=0.109 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCeEEEEEccC--ceEEEec----CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATE---DSKILLHRFNW--QRLWTIS----PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~~--~~v~~~~----~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve 91 (763)
+.++-++|+|+++.|-++.. +|.|..|+++. .++-.++ .+...+.++.+++|++++++. .-|.|.++-+.
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 34788999999987777654 47799999854 4555544 455668899999999998886 67899999986
Q ss_pred C-CeEEEE--ecccCCc----------eeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCccccc
Q 004298 92 N-GKLLRS--LKSHTVA----------VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTD 157 (763)
Q Consensus 92 ~-g~~~~~--l~~h~~~----------V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~ 157 (763)
+ |.+... .-.|.+. +.+..+.|+++++++.. .....+.+|+.... +.+.... .+
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-----LG~Dri~~y~~~dg~L~~~~~~------~v- 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-----LGTDRIFLYDLDDGKLTPADPA------EV- 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-----cCCceEEEEEcccCcccccccc------cc-
Confidence 4 554332 2234443 88899999999888764 12334555554321 1111000 00
Q ss_pred CCcccccceecccCCCeeEEEEEc-CCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEE
Q 004298 158 DSEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHL 236 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~L 236 (763)
.....- -...+++++++..+.. -+++|-+|.++.. .|++..-+.....+. +-.+ +.....+.+|+||++|
T Consensus 188 ~~G~GP--RHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~-dF~g-----~~~~aaIhis~dGrFL 258 (346)
T COG2706 188 KPGAGP--RHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPE-DFTG-----TNWAAAIHISPDGRFL 258 (346)
T ss_pred CCCCCc--ceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcc-ccCC-----CCceeEEEECCCCCEE
Confidence 000011 1123556666554444 5899999988765 344332211111110 0000 0124467789999999
Q ss_pred EEEee
Q 004298 237 TVLCS 241 (763)
Q Consensus 237 lv~~~ 241 (763)
+++-.
T Consensus 259 YasNR 263 (346)
T COG2706 259 YASNR 263 (346)
T ss_pred EEecC
Confidence 88643
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.0003 Score=77.15 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=105.5
Q ss_pred EEEEcCCCC-EEEEEe--CCC---------eEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEE--cCCcEEEEEc
Q 004298 26 IAEWNPEKD-LLAMAT--EDS---------KILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGL--EDGTITLHDV 90 (763)
Q Consensus 26 ~l~~sP~~~-lLA~~s--~Dg---------~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdv 90 (763)
.+.|++-|. +|+.++ .|. ++++..++|. .+..+...++|.++.|+|+|+-+++.+ .--++.|+|.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 489999875 333332 233 6777777654 345556678999999999999887755 6788999997
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
+ |+.+..+. +++-+++-|+|.|++++-++.+ .-.|.+.+||.... ..+....... ...+.+
T Consensus 302 r-~~~v~df~--egpRN~~~fnp~g~ii~lAGFG---NL~G~mEvwDv~n~-K~i~~~~a~~------------tt~~eW 362 (566)
T KOG2315|consen 302 R-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFG---NLPGDMEVWDVPNR-KLIAKFKAAN------------TTVFEW 362 (566)
T ss_pred C-CCEeEeCC--CCCccceEECCCCCEEEEeecC---CCCCceEEEeccch-hhccccccCC------------ceEEEE
Confidence 6 88887774 5788999999999988776622 25789999998862 1111111111 123456
Q ss_pred CCCeeEEEEEc------CCCcEEEEEcCceee
Q 004298 171 HQRFSILCSGD------KDGSICFNIFGIFPI 196 (763)
Q Consensus 171 ~~~~~~L~sgs------~DG~I~lw~~~~~~i 196 (763)
++++.++++++ .|+.++||.|..-.+
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 68888888887 478899997654433
No 261
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.91 E-value=0.0035 Score=63.98 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC--------CcEEEEEEccCC---C---EEEEEEcCCcEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG--------KSVTSLCWRPDG---K---AIAVGLEDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~--------~~V~~l~wspDG---~---~Lasg~~Dg~V~lw 88 (763)
+-..++||||+.+||.+...|+|.+|++.|..++.+++. ..|.++.|-+-- + -|.+-..+|.++=|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 467799999999999999999999999999999988743 246666665521 2 45666667777666
Q ss_pred EccC-----CeEEEEec--c-cCCceeEEEeecCCCceeccC
Q 004298 89 DVEN-----GKLLRSLK--S-HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 89 dve~-----g~~~~~l~--~-h~~~V~~l~ws~~~~~l~s~s 122 (763)
-+.. .+.-+++. . +...|.++.|+|..+.+..|+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 6532 23334433 2 367999999999988777665
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.89 E-value=8e-05 Score=76.86 Aligned_cols=214 Identities=13% Similarity=0.107 Sum_probs=133.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc--eEEEecCCC------cEEEEEEcc-CCCEEEEEEcCCcEEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQ--RLWTISPGK------SVTSLCWRP-DGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~--~v~~~~~~~------~V~~l~wsp-DG~~Lasg~~Dg~V~lwd 89 (763)
+..|.+++++.|+..+.++ +|=.|.+|++ ..+ .|..++|.. -|++-.|+| ....++-.++.|+|+|.|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 3459999999999887755 5778999998 222 455566542 489999999 556889999999999999
Q ss_pred ccCCeEEEE----e------------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC---Cccc
Q 004298 90 VENGKLLRS----L------------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP---GLVS 150 (763)
Q Consensus 90 ve~g~~~~~----l------------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~---~~~s 150 (763)
++...+-.. + ..--+.|..+.|+++|+++.+-. --++++||......+.. .+..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceEEeehHh
Confidence 984322110 0 01125688899999999999873 57899999854222211 1100
Q ss_pred --CCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEE--cCceeeeeeeecccc--------ccc-ccCCCCCce
Q 004298 151 --GDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI--FGIFPIGKINIHKFH--------VAI-PNADEQGTC 217 (763)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~--~~~~~ig~~~i~~~~--------~~~-~s~~~~~~~ 217 (763)
...+...+.+..++.+.++++.+..++++|+.....+++. -++....+......+ ... .+++.....
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~ 395 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRD 395 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccc
Confidence 0011112334455667777888888999999999999997 333222222111100 000 122222111
Q ss_pred eee------ccceeeEEecCCCCEEEEEeec
Q 004298 218 RLL------NASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 218 ~l~------~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.++ +..|...+|.|..+.++++++.
T Consensus 396 ~~~vd~ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 396 EISVDALDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred ccccchhhhhhHHHhhccCCccceeeeeecC
Confidence 121 2357778899988888887764
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.86 E-value=0.00041 Score=78.11 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CC--eEE--EEEccC---ceEEEecCC--CcEEEEEEccCCCEEEEEE-cCCcEEEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATE-DS--KIL--LHRFNW---QRLWTISPG--KSVTSLCWRPDGKAIAVGL-EDGTITLHD- 89 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~-Dg--~V~--v~~l~~---~~v~~~~~~--~~V~~l~wspDG~~Lasg~-~Dg~V~lwd- 89 (763)
+.....+|||||+.||..+. +| .+. +|++.. .....+..+ ......+|+|||+.|+..+ .+|...||.
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 33557899999999887653 23 333 355531 222222222 2346789999999888776 466555554
Q ss_pred -cc-CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 90 -VE-NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 90 -ve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+. .+...+.+..+...+....|+|||+.++..+... ....+.+||...
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~ 360 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDLAT 360 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC---CCcEEEEEECCC
Confidence 43 2334555655556778899999999887654110 124577777654
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00023 Score=72.18 Aligned_cols=158 Identities=16% Similarity=0.025 Sum_probs=106.3
Q ss_pred CCeEEEEEcC---CCC-EEEEEeCCCeEEEEEccCceE-EEecC-------CCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEWNP---EKD-LLAMATEDSKILLHRFNWQRL-WTISP-------GKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP---~~~-lLA~~s~Dg~V~v~~l~~~~v-~~~~~-------~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+.+..+.|+- +|+ .++.+..+|.|.+|+.....- ..+.+ .....++.|++-|..++++-.+|.+.+.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3467778863 556 566777889999999854322 22221 11246789999999999999999999666
Q ss_pred ccCCeEEE--EecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 90 VENGKLLR--SLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 90 ve~g~~~~--~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
...+.+.. ..+.|+-..+...|+... ..+.+|+ +|+.+..||.+.+..-+-....-|+. .+..+
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg------DD~~l~~~D~R~p~~~i~~n~kvH~~-------GV~SI 216 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG------DDGSLSCWDIRIPKTFIWHNSKVHTS-------GVVSI 216 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecC------CCceEEEEEecCCcceeeecceeeec-------ceEEE
Confidence 55444443 678899999999998655 4677888 89999999999322111111111111 11112
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
. +..+...++++|+.|-+|++|+.+.
T Consensus 217 ~-ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 217 Y-SSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred e-cCCCCCceEEEeccccceeeeehhc
Confidence 2 2335667999999999999999663
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.00034 Score=79.29 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCEEEE-EeCCCe--EEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEc-CC--cEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAM-ATEDSK--ILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLE-DG--TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~-~s~Dg~--V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~-Dg--~V~lwdve~g~~~ 96 (763)
....+|+|+|+.||. .+.+|. |+++++.+..+..+.. .......+|+|||+.|+..+. +| .|.++|+.+++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 456899999998876 455664 7777776665555543 345677899999998887664 34 4666777777654
Q ss_pred EEecccCCceeEEEeecCCCceeccC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
. +..+........|+|+|+.++..+
T Consensus 344 ~-Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 344 R-LTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred E-EecCCCCCcCeeECCCCCEEEEEE
Confidence 3 322223345578999998876654
No 266
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00013 Score=78.43 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc-CCe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE-NGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve-~g~ 94 (763)
++-|..+.|+..|+.+++++.|..|.+|+. .++.+..+. |...|..-.|-| +.+.|+..+.||.|++=.+- +|.
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~ 221 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY 221 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc
Confidence 456999999999999999999999999998 666666665 555666667888 45689999999999987754 454
Q ss_pred EE--EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 LL--RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~--~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
+. ..+..|.++|..++.-|+.. .+.+++ .|+.+.-+|.+...+...........- ..-....+...+
T Consensus 222 ~e~t~rl~~h~g~vhklav~p~sp~~f~S~g------eD~~v~~~Dlr~~~pa~~~~cr~~~~~---~~v~L~~Ia~~P- 291 (559)
T KOG1334|consen 222 VENTKRLAPHEGPVHKLAVEPDSPKPFLSCG------EDAVVFHIDLRQDVPAEKFVCREADEK---ERVGLYTIAVDP- 291 (559)
T ss_pred eecceecccccCccceeeecCCCCCcccccc------cccceeeeeeccCCccceeeeeccCCc---cceeeeeEecCC-
Confidence 43 34557899999999999875 456666 799888888776433221110000000 000111222222
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeee--eecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKI--NIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~--~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+-+.+++|+.|-..++|+...+..... .+.++..+..-. .+ ...|+++++|.++.-|+++-.+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~------~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DD------PVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cC------cccceeEEecCCccceeeeeccc
Confidence 2335899999999999998665432211 111111111111 11 13488999999999999887665
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.00026 Score=79.11 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=119.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEE---ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWT---ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~---~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|..+.|+.+.+.|-++..+|-|.||-+ +|+-.-. -.....|.+++|+.||+.|+..+.||.|.+=.++.+++..
T Consensus 72 ~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg 151 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG 151 (1189)
T ss_pred ceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc
Confidence 35999999999999999999999999988 5542111 1244568999999999999999999999888776433322
Q ss_pred -EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcc-cCCcccccCCcccccceecc-----
Q 004298 98 -SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLV-SGDTGFTDDSEDSFRELANS----- 169 (763)
Q Consensus 98 -~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~-s~~~~~~~~~~~~~~~~~~~----- 169 (763)
.+++ ....++.|++|.+.+..+- ..|.+.++|...... ++.... ...++..+.-...+..+.|.
T Consensus 152 KeLkg--~~l~hv~ws~D~~~~Lf~~------ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 152 KELKG--QLLAHVLWSEDLEQALFKK------ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred hhcch--heccceeecccHHHHHhhh------cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 2332 2455789999987766554 577888887654210 000000 00000000001112222221
Q ss_pred -cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 170 -SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 170 -~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|+-..|+++-.+|.+.+--... ... |.-+.+ + -.|..+.|+++|..|++++.+.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eN--D~~------Pvv~dt----g------m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSEN--DPE------PVVVDT----G------MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcC--CCC------CeEEec----c------cEeecceecCCCcEEEEccCcc
Confidence 124556889988888887642110 000 000000 0 1256789999999999987764
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.77 E-value=5e-05 Score=92.46 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=109.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE---cCCcEEEEEcc-C--Ce
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVE-N--GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve-~--g~ 94 (763)
++|+.+.||.+|+.+.++..||.+.+|..+.+....-+ |++..+.++|-- ..+|+++ .++.+.+||.- . ..
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence 77999999999999999999999999999855554443 666666666654 6677765 67899999964 2 23
Q ss_pred EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+++ +.|.+.++++++.|..+.+.+|+ .+|.+.+||.+.. ++..+.. .. +..
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisgg------r~G~v~l~D~rqr--ql~h~~~------------------~~-~~~ 2380 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGG------RKGEVCLFDIRQR--QLRHTFQ------------------AL-DTR 2380 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecC------CcCcEEEeehHHH--HHHHHhh------------------hh-hhh
Confidence 455 78999999999999999999999 9999999999862 1111100 01 244
Q ss_pred eEEEEEcCCCcEEEEEcCce
Q 004298 175 SILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~ 194 (763)
.++++|+..|.|+||....+
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred heeeccCcccceEEEEcccc
Confidence 68999999999999987765
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.75 E-value=0.00014 Score=73.86 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe---c-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEcc-CCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI---S-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVE-NGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~---~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve-~g~~~~ 97 (763)
..++.|++.+..++++..+|.+.+-..+...+-+. + |.-++....|+- +-..+.+|++||.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999999999999999987544433333332 2 445566666665 44689999999999999998 445544
Q ss_pred E-ecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCC
Q 004298 98 S-LKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM 145 (763)
Q Consensus 98 ~-l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l 145 (763)
+ .+.|...|.+|.-+| ...++++|+ .|..+++||.+....++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGs------YDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGS------YDECIRVLDTRNMGKPL 247 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEec------cccceeeeehhcccCcc
Confidence 4 677899999998875 467899998 89999999999643333
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.0039 Score=65.49 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=80.2
Q ss_pred EEEEEcCCCCEEEEEeCC-CeEEEEEc-cCceEEEe----cCCCc----------EEEEEEccCCCEEEEEE-cCCcEEE
Q 004298 25 KIAEWNPEKDLLAMATED-SKILLHRF-NWQRLWTI----SPGKS----------VTSLCWRPDGKAIAVGL-EDGTITL 87 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~D-g~V~v~~l-~~~~v~~~----~~~~~----------V~~l~wspDG~~Lasg~-~Dg~V~l 87 (763)
..++.++++++++++... |.|.++.+ ....++.. .|.+. +.+..+.|||+++++.. .--.|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 779999999999988754 78999999 32333332 33333 88899999999998887 4567899
Q ss_pred EEccCCeEEEEec---ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|+++.|+....-. .-...-.+|.|+|++++...-. --+++|.+|...+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-----EL~stV~v~~y~~ 222 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-----ELNSTVDVLEYNP 222 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-----ccCCEEEEEEEcC
Confidence 9999887543211 2245778999999998765433 1477888886655
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.68 E-value=0.0027 Score=68.35 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=121.1
Q ss_pred EcC-CCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCC-cEEEEEccCCeEEEEecccCCce
Q 004298 29 WNP-EKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG-TITLHDVENGKLLRSLKSHTVAV 106 (763)
Q Consensus 29 ~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg-~V~lwdve~g~~~~~l~~h~~~V 106 (763)
|++ +|+++|..+ -|+..|.+.....+..+.+...|.-..+.-|++-++.|..|| .+-|+|.++++..+.. ..-+.|
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~lg~I 404 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KDLGNI 404 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CCccce
Confidence 555 689999887 577888888777777887777799999999999999999999 8999999988765544 446899
Q ss_pred eEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCc-
Q 004298 107 VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGS- 185 (763)
Q Consensus 107 ~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~- 185 (763)
.++..+++|+.++.+. +...+-+.|+.+...++.. ....+. + +.+.++++...+|-+--+|.
T Consensus 405 ~av~vs~dGK~~vvaN------dr~el~vididngnv~~id--kS~~~l-------I--tdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 405 EAVKVSPDGKKVVVAN------DRFELWVIDIDNGNVRLID--KSEYGL-------I--TDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred EEEEEcCCCcEEEEEc------CceEEEEEEecCCCeeEec--ccccce-------e--EEEEEcCCceeEEEecCccee
Confidence 9999999999888875 3344444455442222111 111112 2 23345677788888877664
Q ss_pred ---EEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCc
Q 004298 186 ---ICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 186 ---I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l 244 (763)
|++++...-.+-.+. . +++ --.+.+|.|||++|+..+...|
T Consensus 468 tq~Iklydm~~~Kiy~vT--T-----~ta-----------~DfsPaFD~d~ryLYfLs~RsL 511 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVT--T-----PTA-----------YDFSPAFDPDGRYLYFLSARSL 511 (668)
T ss_pred eeeEEEEecCCCeEEEec--C-----Ccc-----------cccCcccCCCCcEEEEEecccc
Confidence 556654432222221 1 111 1235689999999999987664
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.67 E-value=0.0024 Score=76.07 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=100.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----------------------CCCc-----------
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----------------------PGKS----------- 63 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----------------------~~~~----------- 63 (763)
..+.++|.+++||||.+++|..+..+++.+-.-++..+..-+ +|++
T Consensus 106 g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ 185 (1265)
T KOG1920|consen 106 GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK 185 (1265)
T ss_pred eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence 344578999999999999999999999877665433221100 1111
Q ss_pred ------------EEEEEEccCCCEEEEEE-----cCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCC
Q 004298 64 ------------VTSLCWRPDGKAIAVGL-----EDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIP 126 (763)
Q Consensus 64 ------------V~~l~wspDG~~Lasg~-----~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~ 126 (763)
=+.|.|+-||+++|+.. ....|++||-+ |..-..-....+.=.+++|-|.|..+++-....
T Consensus 186 ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~- 263 (1265)
T KOG1920|consen 186 EKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT- 263 (1265)
T ss_pred cccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-
Confidence 13499999999999954 33799999977 554333223334557899999998887643111
Q ss_pred cccCCceeecCCCCCCCCCCCcccCCccccc-CCcccccceecccCCCeeEEEE---EcCCCcEEEEEcCce
Q 004298 127 TYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD-DSEDSFRELANSSHQRFSILCS---GDKDGSICFNIFGIF 194 (763)
Q Consensus 127 ~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~L~s---gs~DG~I~lw~~~~~ 194 (763)
.|+.|.|+....-.. ++-.... ..+..+..+.|. .+.++|++ ......|++|..+.+
T Consensus 264 --sd~~IvffErNGL~h-------g~f~l~~p~de~~ve~L~Wn--s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 264 --SDSDIVFFERNGLRH-------GEFVLPFPLDEKEVEELAWN--SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred --CCCcEEEEecCCccc-------cccccCCcccccchheeeec--CCCCceeeeecccccceEEEEEecCe
Confidence 355788886553100 1000000 111124445554 45556776 444555999977665
No 273
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.66 E-value=5e-05 Score=54.17 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=36.5
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
|++++++.+|.+.|++|+|+|++..+++++ .|+.+++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~------~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS------SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE------TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC------CCCEEEEEC
Confidence 468899999999999999999999999998 899999996
No 274
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00084 Score=74.80 Aligned_cols=73 Identities=22% Similarity=0.354 Sum_probs=64.0
Q ss_pred CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCcee-EEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV-CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 62 ~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~-~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+.-+.|+|.-..||.+..+|.|-++.+. .+.+.++..|...++ +++|.|||+.++.|- .||++++.|...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~------kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF------KDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe------cCCeEEEEEccC
Confidence 357789999999999999999999999987 777888887777777 999999999999985 899999999876
Q ss_pred C
Q 004298 141 R 141 (763)
Q Consensus 141 ~ 141 (763)
+
T Consensus 94 ~ 94 (665)
T KOG4640|consen 94 G 94 (665)
T ss_pred C
Confidence 3
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.52 E-value=0.0031 Score=68.68 Aligned_cols=186 Identities=12% Similarity=0.031 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC---------------CcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED---------------GTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D---------------g~V~l 87 (763)
+...+|||.|.+|++....+ |.+|.- .+.++..+.| ..|.-+.|+|.|++|.+=... +.+.+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 88999999999999877655 777776 5555555554 358899999999999885432 35999
Q ss_pred EEccCCeEEEEecccCCc--ee-EEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 88 HDVENGKLLRSLKSHTVA--VV-CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~--V~-~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
||+.+|.++..+.....+ .+ -+.|+.+..+.+--. ...+.++++...+...+..... ...+.
T Consensus 113 wd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-------~~sl~i~e~t~n~~~~p~~~lr--------~~gi~ 177 (561)
T COG5354 113 WDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-------GSSLYIHEITDNIEEHPFKNLR--------PVGIL 177 (561)
T ss_pred EeccCceeEeeccccCCcccccceeeeeecchhhhhhc-------cCeEEEEecCCccccCchhhcc--------cccee
Confidence 999999999988765554 45 677888877665432 3456666653322222211111 12233
Q ss_pred ceecccCCCeeEEEEE-----cCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEE
Q 004298 165 ELANSSHQRFSILCSG-----DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sg-----s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
.+.+++..+...|+.= ...+.+++|.+..- +. ..+..+....-.++.|.+.|++|++.
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---s~--------------l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---SV--------------LVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---Ce--------------eeeeeeEeecccEEEEecCCceEEEE
Confidence 3444443333333332 34566666653311 10 01111222233467889999999887
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
....
T Consensus 241 ~~t~ 244 (561)
T COG5354 241 VMTH 244 (561)
T ss_pred EEEe
Confidence 6644
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.0012 Score=73.91 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
-|.+++|+-+|..+..+-.||.|.|=.++|.++|.-. .+.-...+.|+||.+.+..+-.+|.+.++|
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlyd 184 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYD 184 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEec
Confidence 3889999999999999999999999999999999754 222333444444444444444444444444
No 277
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.47 E-value=0.0023 Score=74.00 Aligned_cols=179 Identities=12% Similarity=0.057 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEee
Q 004298 33 KDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws 112 (763)
.+.+..|+-...+..+++++.+.-...+-+.--+.-.+.+++++.+|...|+|.+-|..+.+.+|++..|.+.|..+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 3556667666777788886655544432221113344568899999999999999999999999999999999987665
Q ss_pred cCCCceeccCCC---CCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCe-eEEEEEcCCCcE
Q 004298 113 EDAQPSKNDFGN---IPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF-SILCSGDKDGSI 186 (763)
Q Consensus 113 ~~~~~l~s~s~~---~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~L~sgs~DG~I 186 (763)
.|..+++++.. ....-|..+++||++.. +.++.-+ -...|. .+.|.. ..+++.+..|..
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--~~P~fl------------rf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--YGPQFL------------RFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc--cCchhh------------hhcccccceEEEEecccce
Confidence 47777777632 12335899999999863 2222211 111121 122322 468888888988
Q ss_pred EEEE---cCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 187 CFNI---FGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 187 ~lw~---~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+-+ .+..+.+...++.. ..-+....+|++|..|+++-.++
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~----------------~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPN----------------GSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred eeccccccCCCccceeEEccC----------------CCcceeEEecCCCceEEEecccC
Confidence 8765 22222332221110 01267788899988888765544
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0013 Score=71.95 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=73.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEc-----------CCcEEEEEccC
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLE-----------DGTITLHDVEN 92 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~-----------Dg~V~lwdve~ 92 (763)
+.+.|||.|.+|++--.-| |.+|-- +++++..+.|. .|.-+.|||+.++|++=+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 5789999999999877666 667766 66666666664 4888999999999998542 24689999999
Q ss_pred CeEEEEeccc--CCcee-EEEeecCCCceeccC
Q 004298 93 GKLLRSLKSH--TVAVV-CLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~~~~l~~h--~~~V~-~l~ws~~~~~l~s~s 122 (763)
|...+.+..- ...+. -..||.|++++|.-.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEec
Confidence 9998887652 22333 358999999988653
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0012 Score=73.09 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=89.8
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCcee
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV 107 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~ 107 (763)
+...+|.|+..|.|.+|+. .|+.-|.+. |.+.|+++.|+.+-..|-+++.|+.|..|+..+++.++.++..+..+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 4467889999999999999 455556665 678899999999999999999999999999999999999998889999
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
++..+||+..+.+++ +.+++|+...+
T Consensus 149 sl~is~D~~~l~~as--------~~ik~~~~~~k 174 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--------RQIKVLDIETK 174 (541)
T ss_pred eEEEcCCCCEEEecc--------ceEEEEEccCc
Confidence 999999999888875 78999998874
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.41 E-value=0.0065 Score=61.19 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=113.4
Q ss_pred EEEEeCCCeEEEEEccCceEEEecCCC--cEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEE--ecccCCceeEEE
Q 004298 36 LAMATEDSKILLHRFNWQRLWTISPGK--SVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRS--LKSHTVAVVCLN 110 (763)
Q Consensus 36 LA~~s~Dg~V~v~~l~~~~v~~~~~~~--~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~--l~~h~~~V~~l~ 110 (763)
+..++.|.++++..+.+.......|.. .+.++..+||++++++.+....|..|.+.+ ++.+.. .....+.=.+.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 445667777777666544333333333 378999999999999999999999999874 433332 223345667899
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
|+.+...+|++. .|+++-+||++....++....+.. +.....+....+......++|...-.-+.+++.+
T Consensus 211 ~s~~~~~FAv~~------Qdg~~~I~DVR~~~tpm~~~sstr----p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 211 FSENDLQFAVVF------QDGTCAIYDVRNMATPMAEISSTR----PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred eccCcceEEEEe------cCCcEEEEEecccccchhhhcccC----CCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 999999999998 899999999986432222111110 0111223333333344556777766778888888
Q ss_pred cCceeeeeee-ecccccccccCCCCCceeeec-cceeeEEecCCCCEEEEEeecC
Q 004298 191 FGIFPIGKIN-IHKFHVAIPNADEQGTCRLLN-ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 191 ~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~-~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+.....- +.. +. .+-.. .-|...+|+.++....+..+..
T Consensus 281 ~R~~~~~q~I~i~~----------d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPD----------DV-ERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cccCceeeEEecCc----------cc-cccccccccccccccCCCcccccccchh
Confidence 7766444321 111 00 00000 1245566777777777665544
No 281
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.35 E-value=0.03 Score=62.68 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=77.4
Q ss_pred eEEEEEcCCC-CEEEE----EeCCCeE----EEEEccCceEE-----EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 24 IKIAEWNPEK-DLLAM----ATEDSKI----LLHRFNWQRLW-----TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~----~s~Dg~V----~v~~l~~~~v~-----~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..++.||-.. ..+-+ .+.+|.+ .+|.....++. .+..+..|.|.+++|+.+.++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 4556676533 33333 2334433 35666444333 334677899999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
...+-.... .+.-..+.++|+|+|..++.|+ ..|.+.+||..
T Consensus 288 ~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s------~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGS------EQGELQCFDMA 329 (545)
T ss_pred cCCCeeeee--eecccceEEEEcCCCcEEEEEc------CCceEEEEEee
Confidence 876633322 3345789999999999999998 78999999975
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.33 E-value=0.03 Score=69.89 Aligned_cols=218 Identities=16% Similarity=0.083 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEccCceEEEecC---------C---------CcEEEEEEcc-CCCEEEEEEcCC
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRFNWQRLWTISP---------G---------KSVTSLCWRP-DGKAIAVGLEDG 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~~v~~~~~---------~---------~~V~~l~wsp-DG~~Lasg~~Dg 83 (763)
...++++|+++.|.++. ..+.|+++++..+.+.++.. + .....++++| +|..+++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 46789999888665554 45678889986666655521 0 1246899999 566667777899
Q ss_pred cEEEEEccCCeEEEEeccc---------------CCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCC
Q 004298 84 TITLHDVENGKLLRSLKSH---------------TVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h---------------~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~ 147 (763)
.|++||..++... .+.+. -.....|+|+|++..+ ++.+ .++.|+.||..........
T Consensus 706 ~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred eEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEEECCCCcEEEEE
Confidence 9999999877653 22111 1235679999998743 4444 6789999987642111000
Q ss_pred cccC---C--cccccC----Ccccc-cceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCce
Q 004298 148 LVSG---D--TGFTDD----SEDSF-RELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTC 217 (763)
Q Consensus 148 ~~s~---~--~~~~~~----~~~~~-~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~ 217 (763)
.... . ..+... ....+ .......+++++++++-+.+++|++|+.....+-++..... .+..++..
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-----~G~~dG~~ 853 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-----AGFKDGKA 853 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC-----cCCCCCcc
Confidence 0000 0 000000 00000 01122345667788888899999999865443333221110 00011100
Q ss_pred -eeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 218 -RLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 218 -~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.---.....+++++||+ ++++-.. +..|.++.+++.
T Consensus 854 ~~a~l~~P~GIavd~dG~-lyVaDt~-----------Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGR-LFVADTN-----------NSLIRYLDLNKG 890 (1057)
T ss_pred cccccCCceEEEEeCCCC-EEEEECC-----------CCEEEEEECCCC
Confidence 00001345789999997 5554321 236777777654
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.29 E-value=0.023 Score=63.75 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=49.7
Q ss_pred eEEEEEccCceEEEecCCCcEEEEEEccCCCE-EEEEEc---CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTISPGKSVTSLCWRPDGKA-IAVGLE---DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~-Lasg~~---Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|.+-+.+|.....+..+..+...+|+|||+. ++..+. +..|.++|+.+|+...-. ...+.+....|+|||+.++
T Consensus 170 ~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEE
Confidence 45555554443333333346788999999984 665443 356899999888764433 3455667788999998665
Q ss_pred c
Q 004298 120 N 120 (763)
Q Consensus 120 s 120 (763)
.
T Consensus 249 ~ 249 (419)
T PRK04043 249 L 249 (419)
T ss_pred E
Confidence 4
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.28 E-value=0.0052 Score=76.57 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=100.4
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEecC----------------CCcEEEEEEccCCCEEE-EEEcCCcEE
Q 004298 25 KIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTISP----------------GKSVTSLCWRPDGKAIA-VGLEDGTIT 86 (763)
Q Consensus 25 ~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~----------------~~~V~~l~wspDG~~La-sg~~Dg~V~ 86 (763)
..++++| ++.++++.+.++.|++|+.....+..+.. ......|+|+|||+.|. +-+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 5789999 56777777888999999985554433210 12356799999998555 445779999
Q ss_pred EEEccCCeEEEEecc-------------c--------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CC
Q 004298 87 LHDVENGKLLRSLKS-------------H--------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQ 144 (763)
Q Consensus 87 lwdve~g~~~~~l~~-------------h--------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~ 144 (763)
+||+.++.......+ + -.....++++++|..+++.. .++.|++||..... ..
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCeEEE
Confidence 999987653211100 0 11245788999988776665 78999999976431 11
Q ss_pred CCCcccCCcccccC--Ccccc-cceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 145 MPGLVSGDTGFTDD--SEDSF-RELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 145 l~~~~s~~~~~~~~--~~~~~-~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+.+ .+..++.++ ....+ .......+++++++++-+.+++|++|+....
T Consensus 840 iaG--~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 840 LAG--TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred Eec--cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 111 111111100 00111 1112234567788999899999999986553
No 285
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.26 E-value=0.058 Score=58.52 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=60.1
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEEc-cCceEEEecCCC--------cEEEEEEccCCCEEEEEE-c-CCcEEE
Q 004298 29 WNPEKDLLAMATE----------DSKILLHRF-NWQRLWTISPGK--------SVTSLCWRPDGKAIAVGL-E-DGTITL 87 (763)
Q Consensus 29 ~sP~~~lLA~~s~----------Dg~V~v~~l-~~~~v~~~~~~~--------~V~~l~wspDG~~Lasg~-~-Dg~V~l 87 (763)
.||+++.+.++.. ++.|.+|+. +.+.+..+.-+. ....++++|||+++.+.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999988877655 688999999 778887776332 344899999999999877 4 799999
Q ss_pred EEccCCeEEEEecc
Q 004298 88 HDVENGKLLRSLKS 101 (763)
Q Consensus 88 wdve~g~~~~~l~~ 101 (763)
.|+++++.+..+..
T Consensus 133 vD~~~~kvv~ei~v 146 (352)
T TIGR02658 133 VDLEGKAFVRMMDV 146 (352)
T ss_pred EECCCCcEEEEEeC
Confidence 99999999988764
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.00035 Score=79.48 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=87.7
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 25 KIAEWNPEKDLLAMATE----DSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~----Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+..+|+|...++|+++- .|+|.||--+|++-..+...-.++++||+|..-.||+|+.-|.+.+|...+.+.-....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 34679999999999874 47898888777744444434457889999999999999999999999988776666666
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.|..+|..+.|+++|..+.++. ..|.+.+|..
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d------~~g~v~lwr~ 130 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLD------NPGSVHLWRY 130 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcC------CCceeEEEEe
Confidence 8999999999999999999987 6777777743
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.24 E-value=0.00073 Score=71.48 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
|-..++.++|+||+++|+++..|+.|++-.......+.++. +|..-|..|+..++.. +.++| .|+++++||.
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~s------GD~tlr~Wd~ 222 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGS------GDKTLRLWDI 222 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecC------CCCcEEEEec
Confidence 55678999999999999999999999998887666676654 6999999999887654 66776 7999999998
Q ss_pred CC
Q 004298 139 AP 140 (763)
Q Consensus 139 ~~ 140 (763)
.+
T Consensus 223 ~s 224 (390)
T KOG3914|consen 223 TS 224 (390)
T ss_pred cc
Confidence 76
No 288
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.018 Score=64.34 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=53.7
Q ss_pred EEEEcCCCCEEEEEeCC-----------CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 26 IAEWNPEKDLLAMATED-----------SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~D-----------g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++.+|.|-.+|+..++ ..|.||+..|+.++++. ..+.+.++.|+.+.+ |++-..||.++++|+. |
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-G 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-C
Confidence 46778888888877655 15999999999999986 347899999998654 5566699999999986 4
Q ss_pred eE
Q 004298 94 KL 95 (763)
Q Consensus 94 ~~ 95 (763)
+.
T Consensus 111 ~~ 112 (410)
T PF04841_consen 111 EF 112 (410)
T ss_pred ce
Confidence 44
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.19 E-value=0.028 Score=67.45 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=115.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc----CCeE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE----NGKL- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----~g~~- 95 (763)
+.|.++.|.-+.+-+..+..+|.|.+.+.....+-.. .-...|.+++|+||++.++.....+++.+.+-. .-+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4688899998888888999999998887633222222 234569999999999999999999988776531 0011
Q ss_pred ----------E--------EEeccc---------------------CCceeEEEeecCCCceeccCCCCCcccC-Cceee
Q 004298 96 ----------L--------RSLKSH---------------------TVAVVCLNWEEDAQPSKNDFGNIPTYED-RTSRF 135 (763)
Q Consensus 96 ----------~--------~~l~~h---------------------~~~V~~l~ws~~~~~l~s~s~~~~~~~d-~~i~~ 135 (763)
+ ..|++. .+.=+.|+|.-||.++++.. .....+ +.+++
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~--~~~~~~~RkirV 226 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF--VESETGTRKIRV 226 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE--EeccCCceeEEE
Confidence 1 122210 11234599999999888732 000123 89999
Q ss_pred cCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE---cCCCcEEEEEcCceeeeeeeecccccccccCC
Q 004298 136 FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG---DKDGSICFNIFGIFPIGKINIHKFHVAIPNAD 212 (763)
Q Consensus 136 wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg---s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~ 212 (763)
||....+........+. -..+.| .|.+..+++- ++|+.|.++.-....-|.+.+.- +.
T Consensus 227 ~drEg~Lns~se~~~~l----------~~~LsW--kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~---p~---- 287 (1265)
T KOG1920|consen 227 YDREGALNSTSEPVEGL----------QHSLSW--KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF---PL---- 287 (1265)
T ss_pred ecccchhhcccCccccc----------ccceee--cCCCCeEeeeeecCCCCcEEEEecCCccccccccCC---cc----
Confidence 99874332221111111 112333 3566666654 35667888765544555443211 00
Q ss_pred CCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 213 EQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 213 ~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+ -.+|..++|+.++..|++..+
T Consensus 288 -d------e~~ve~L~Wns~sdiLAv~~~ 309 (1265)
T KOG1920|consen 288 -D------EKEVEELAWNSNSDILAVVTS 309 (1265)
T ss_pred -c------ccchheeeecCCCCceeeeec
Confidence 0 013678888888888877544
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.00047 Score=71.43 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc---c---CceEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF---N---WQRLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~---~~~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
++|.++.|.-.++++..|...|.|.++|+ + +.+...+.|+..|+++..-. ++++|++.+.+|+|++||.+--+
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K 332 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK 332 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence 45888999998999999999999999998 2 33455566999999988766 88999999999999999988555
Q ss_pred E---EEEecccCCceeEEE--eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 L---LRSLKSHTVAVVCLN--WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~---~~~l~~h~~~V~~l~--ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+ +.++.+|-+.-.-+- ..+....+++++ +|...|+|.+..
T Consensus 333 ~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G------dDcytRiWsl~~ 377 (425)
T KOG2695|consen 333 CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG------DDCYTRIWSLDS 377 (425)
T ss_pred cccceeeeecccccccccccccccccceEEEcc------CeeEEEEEeccc
Confidence 5 888888865433332 334455667777 899999998774
No 291
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.18 E-value=0.0058 Score=69.75 Aligned_cols=194 Identities=12% Similarity=-0.025 Sum_probs=111.2
Q ss_pred EcCCCCEEEE-EeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE--------------------------
Q 004298 29 WNPEKDLLAM-ATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-------------------------- 80 (763)
Q Consensus 29 ~sP~~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-------------------------- 80 (763)
++|+|..+.. .-..+.+.+.+. +.+.+|++.-+.....+.++|||+++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3455544322 222344556665 445567766555556677777777776665
Q ss_pred --------------cCCcEEEEEccC-----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 81 --------------EDGTITLHDVEN-----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 81 --------------~Dg~V~lwdve~-----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.++.|.+.|..+ .+.+..+.. ......+.++|||++++.++. .+.++.+.|....
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k~ 353 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRKL 353 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCC-----CCCcEEEEEChhh
Confidence 235688888877 355555543 567788999999998876652 5778888877642
Q ss_pred CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-----------eeeeeeeeccccccccc
Q 004298 142 IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI-----------FPIGKINIHKFHVAIPN 210 (763)
Q Consensus 142 ~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-----------~~ig~~~i~~~~~~~~s 210 (763)
..-...........+...+-....+...++++++...+-.-|..|..|+++. ..+.+++++-.++|..+
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~ 433 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHA 433 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeee
Confidence 1100000000011111111122233344567788888888999999998665 24455666555544432
Q ss_pred CCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 211 ADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 211 ~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.... .-.|||++|+++..
T Consensus 434 ~~g~-------------t~~~dgk~l~~~nk 451 (635)
T PRK02888 434 SMGE-------------TKEADGKWLVSLNK 451 (635)
T ss_pred cCCC-------------cCCCCCCEEEEccc
Confidence 2111 23688888887654
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.16 E-value=0.00073 Score=67.59 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE-EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecC
Q 004298 61 GKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL-RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 61 ~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~-~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd 137 (763)
.+.|++++-+| ..+.+++|+.||.+-+||.++.... ..++.|+.+|+-+.|+|.+ ..+.+++ +||.+-.||
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s------edGslw~wd 252 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS------EDGSLWHWD 252 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec------CCCcEEEEc
Confidence 34699999999 5567888999999999999987433 3467899999999999854 5777777 899999999
Q ss_pred CCC
Q 004298 138 PAP 140 (763)
Q Consensus 138 ~~~ 140 (763)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 874
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.15 E-value=0.0023 Score=65.43 Aligned_cols=203 Identities=12% Similarity=0.170 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc--eEEEe----c-C------------CCcEEEEEEccCCC--EEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ--RLWTI----S-P------------GKSVTSLCWRPDGK--AIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~--~v~~~----~-~------------~~~V~~l~wspDG~--~Lasg~ 80 (763)
..|+++.|.-.|.++|+|...|.|.+|.-+.. .-+.+ + | ..+|..|.|-.++. .+...+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 45899999999999999999999988876322 12211 1 1 24689999987654 577788
Q ss_pred cCCcEEEEEccCCeE-------------------E-----------------------EEe-cccCCceeEEEeecCCCc
Q 004298 81 EDGTITLHDVENGKL-------------------L-----------------------RSL-KSHTVAVVCLNWEEDAQP 117 (763)
Q Consensus 81 ~Dg~V~lwdve~g~~-------------------~-----------------------~~l-~~h~~~V~~l~ws~~~~~ 117 (763)
.|.+|++|-+..... + +.+ ..|.-.|.+++++.|...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 999999998754310 0 000 135566788888888887
Q ss_pred eeccCCCCCcccCCceeecCCCCCCCCCCC-cccCCcccccCCcccccceecccCCC-eeEEEEEcCCCcEEEEEcCcee
Q 004298 118 SKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-LVSGDTGFTDDSEDSFRELANSSHQR-FSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 118 l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
+.++ +|=.|.+|++.-.-....- -..++. ..+...-+.. ..+++. .+++.-.++.|.|++.+.+...
T Consensus 187 ~lSa-------DdLrINLWnl~i~D~sFnIVDiKP~n--meeLteVItS--aeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 187 LLSA-------DDLRINLWNLEIIDGSFNIVDIKPHN--MEELTEVITS--AEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeec-------cceeeeeccccccCCceEEEeccCcc--HHHHHHHHhh--cccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 7777 5778888876531100000 000000 0000011111 123332 3566677889999998765221
Q ss_pred ee--eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 196 IG--KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 196 ig--~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
.. .-.+........... -+.-.-.+|..+.||++|++++.
T Consensus 256 lcdn~~klfe~~~D~v~~~---ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVD---FFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred hccCchhhhhhccCcccch---hHHHHhhhhcceEEcCCCcEEEE
Confidence 11 000000000000000 00001146889999999998864
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.07 E-value=0.017 Score=58.28 Aligned_cols=143 Identities=15% Similarity=0.022 Sum_probs=84.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCceE--EEec-CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCCeEEEEecccC--Cc
Q 004298 32 EKDLLAMATEDSKILLHRFNWQRL--WTIS-PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENGKLLRSLKSHT--VA 105 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l~~~~v--~~~~-~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~--~~ 105 (763)
+...||.|+..|...+|..+.... .... +...|+-+.=.-|. --+..++.|.++++++++-+..... .|. -.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eeccccc
Confidence 457899999999999999853322 2221 22212111111122 2467778899999998874322111 232 23
Q ss_pred eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC---CCcccCCcccccCCcccccceecccCCCeeEEEEEcC
Q 004298 106 VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM---PGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDK 182 (763)
Q Consensus 106 V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~ 182 (763)
+.+++.++++++.++.+ +.+.+-+|.+......+ ......+.+| ..+++.+...+|+++.
T Consensus 161 ~ns~~~snd~~~~~~Vg------ds~~Vf~y~id~~sey~~~~~~a~t~D~gF-----------~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVG------DSRRVFRYAIDDESEYIENIYEAPTSDHGF-----------YNSFSENDLQFAVVFQ 223 (344)
T ss_pred eeeeEEcCCCceEEEec------CCCcceEEEeCCccceeeeeEecccCCCce-----------eeeeccCcceEEEEec
Confidence 88999999999988876 55566665443311111 1111122222 3345566778999999
Q ss_pred CCcEEEEEcCc
Q 004298 183 DGSICFNIFGI 193 (763)
Q Consensus 183 DG~I~lw~~~~ 193 (763)
||++.+|+.+.
T Consensus 224 dg~~~I~DVR~ 234 (344)
T KOG4532|consen 224 DGTCAIYDVRN 234 (344)
T ss_pred CCcEEEEEecc
Confidence 99999998664
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.02 E-value=0.0082 Score=62.47 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=97.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec----CCCcEEEEEEccCCCEEEE--------------
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS----PGKSVTSLCWRPDGKAIAV-------------- 78 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~----~~~~V~~l~wspDG~~Las-------------- 78 (763)
..|.++++++++++...|.+|-..|++.=+.+ +.++.-... |...|..+-|+-....+++
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 45677999999999999999999998877665 222211111 2223333333322222222
Q ss_pred -------------------------EEcCCcEEEEEcc--CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCC
Q 004298 79 -------------------------GLEDGTITLHDVE--NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR 131 (763)
Q Consensus 79 -------------------------g~~Dg~V~lwdve--~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~ 131 (763)
|-..|.|.+..++ .-..+.++.+|.+.+++++|.+....+.+|. .|.
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~------~d~ 219 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA------SDH 219 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc------ccC
Confidence 2233344433332 2345677789999999999999999999997 899
Q ss_pred ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 132 TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
.+.+||+......... ..++..- ...+. .-+....+.+++.||.|.+|+.+..
T Consensus 220 ~vi~wdigg~~g~~~e-l~gh~~k-------V~~l~--~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYE-LQGHNDK-------VQALS--YAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceEEEeccCCcceeee-eccchhh-------hhhhh--hhhhheeeeeccCCCeEEEEeccce
Confidence 9999998653211110 1111111 11111 1233467999999999999986554
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.87 E-value=0.23 Score=55.86 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc---------eEEEec---------------------------CCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQ---------RLWTIS---------------------------PGKSVTS 66 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~---------~v~~~~---------------------------~~~~V~~ 66 (763)
...+.+||+|+.++++ .||.-.||.. .+. -+|... ....+..
T Consensus 35 p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~ 113 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEK 113 (443)
T ss_dssp -SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEE
T ss_pred CeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccce
Confidence 6788999999988884 4666666664 211 122211 0011222
Q ss_pred EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 67 l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
|-- |..|++.+.+ .|.+||+++++.++++.. .+|..+.|++++.+++-.+ +.++.+++
T Consensus 114 If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t-------~~~i~il~ 171 (443)
T PF04053_consen 114 IFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVT-------KDSIYILK 171 (443)
T ss_dssp EE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE--------S-SEEEEE
T ss_pred EEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEe-------CCeEEEEE
Confidence 211 8888877655 899999999999999974 3489999999999887765 44555554
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.83 E-value=0.0087 Score=65.28 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCe-E
Q 004298 22 SQIKIAEWNPEKDLLAMAT--EDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGK-L 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~-~ 95 (763)
+.|..++|+|+++.+++.+ ..-.+.++++.++..+.+. ...=+.+-|+|.++++++++-| |.|-+||..... +
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P-e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP-EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccceEEecC-CcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 4599999999999888755 6678999999888555554 3444668899999999998854 779999987543 3
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+..+.+ ...+-+.|+|+++++.+.-..-..-.|..+++|++..
T Consensus 354 ~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 335543 3456678999999887654333334688999998765
No 298
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.029 Score=62.81 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCEEEEEe---CC-CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE-cCCc--EEEEEccCCeE
Q 004298 24 IKIAEWNPEKDLLAMAT---ED-SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGT--ITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s---~D-g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~--V~lwdve~g~~ 95 (763)
+..-+|+|+++.++..+ .. ..+.++++ .+++.........-...+|+|||+.|+... .||. |.++|+.++.
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~- 273 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN- 273 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-
Confidence 67789999998887653 22 35888888 344333333344456789999999887765 5665 5666766555
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+..+....+.-+.-.|+|+|+.++..+
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~S 300 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTS 300 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEe
Confidence 444554444445778999999887665
No 299
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.0028 Score=68.55 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---C----------ceEEE-ec---CCCcEEEEE-EccCCCEEEEEEcC
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN---W----------QRLWT-IS---PGKSVTSLC-WRPDGKAIAVGLED 82 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~----------~~v~~-~~---~~~~V~~l~-wspDG~~Lasg~~D 82 (763)
|-.|++++++.++.-+.++-.|-.|++++-+ | +.+.. ++ +...|.++- |-|...|+++|++-
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 3459999999766444445567789999762 3 11111 11 223477765 67888999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|.|.||+-.++++++-+.+....|+|+.=+|--..+++++ -|..|++|....
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP~~ 467 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTPLT 467 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecCCc
Confidence 9999999999999988888777999999999888999988 899999998754
No 300
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.0058 Score=69.16 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=83.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC--C-CcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP--G-KSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+....|..|..-+++-++++++.|+..|.+++|+-.+.....++. + ..+..+..+++..+.|.|+..|.|.++-+.+
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 344445568888888999999999999999999997776666654 2 3455677899999999999999999998876
Q ss_pred CeE-----EEEe-cccCCceeEEEeecCCCceeccC
Q 004298 93 GKL-----LRSL-KSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~-----~~~l-~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.. +... +.|...|+|++|++|+..+.+|.
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD 143 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD 143 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecC
Confidence 422 1111 24678999999999999988885
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.005 Score=64.02 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=98.6
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-----eEEEEe
Q 004298 26 IAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-----KLLRSL 99 (763)
Q Consensus 26 ~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-----~~~~~l 99 (763)
.++|+-+- -+=++.+.+-.|.+-++.+..-..+.....|.++.|.-.+.++..|+.+|.|..+|++.+ .+.+.+
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 34676432 122344556666666663333333445567899999999999999999999999999853 455555
Q ss_pred cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 100 KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.|.+.|+++..-. +++.+.+.+ .+++|++||.+-... +-.....||.... ..+....++...++
T Consensus 296 -yh~Ssvtslq~Lq~s~q~LmaS~------M~gkikLyD~R~~K~~~~V~qYeGHvN~~-------a~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 296 -YHDSSVTSLQILQFSQQKLMASD------MTGKIKLYDLRATKCKKSVMQYEGHVNLS-------AYLPAHVKEEEGSI 361 (425)
T ss_pred -EcCcchhhhhhhccccceEeecc------CcCceeEeeehhhhcccceeeeecccccc-------cccccccccccceE
Confidence 5899999998765 566666655 799999999875322 1111222332211 01122234445577
Q ss_pred EEEcCCCcEEEEEcCc
Q 004298 178 CSGDKDGSICFNIFGI 193 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~ 193 (763)
++++.|...++|-.+.
T Consensus 362 ~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDS 377 (425)
T ss_pred EEccCeeEEEEEeccc
Confidence 7789999999997553
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0068 Score=66.19 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=94.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-------CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-------GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-------g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
|..+|.+++--.+.+.+++++.|++|++|.++. ..+..+++.|..+|..+.|-.+.++++++ |+.
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--------D~g 805 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--------DGG 805 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--------cCc
Confidence 345677766556777899999999999999862 23566788999999999999999998886 788
Q ss_pred eeecCCCCC--CCC---CCCcccCCcccccCCcccccceecccCCCeeEEEEE-cCCCcEEEEEcCceee-eeeeecccc
Q 004298 133 SRFFPPAPR--IPQ---MPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG-DKDGSICFNIFGIFPI-GKINIHKFH 205 (763)
Q Consensus 133 i~~wd~~~~--~~~---l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg-s~DG~I~lw~~~~~~i-g~~~i~~~~ 205 (763)
+.+||.--. +.. .+.+.++ . .+.+..+-+..+++.| +...+|++++.++-.. ....+...+
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~---------~---~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAG---------G---NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCC---------c---eeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 999986431 111 1111111 0 1122222233344444 7888999987554321 122222111
Q ss_pred cccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 206 VAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++ ++.+.+++..+.|+.++++.+.+
T Consensus 874 ~P-------------na~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 874 GP-------------NALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred CC-------------chheeEEEeccCcchhhHHhcCC
Confidence 11 12356788888888888876654
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.0055 Score=69.27 Aligned_cols=157 Identities=13% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCeEEEEEc---cCceEEEec--CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEK--DLLAMATEDSKILLHRF---NWQRLWTIS--PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l---~~~~v~~~~--~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g 93 (763)
=.|-...|||.- ++-++.+....-.+|++ +.+.|--+. |+..|+.+.|+|.. ..+|+++-|..|..||+++.
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 347788898854 66666666666678888 445554443 66789999999954 48899999999999999864
Q ss_pred -eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 94 -KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 94 -~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
..+.....-...-+.+.|+.-...+...+ ..+.+++||.+....++... .++...+ ..+.+.. -
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlass------hg~~i~vwd~r~gs~pl~s~-K~~vs~v-------n~~~fnr-~ 212 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASS------HGNDIFVWDLRKGSTPLCSL-KGHVSSV-------NSIDFNR-F 212 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhc------cCCceEEEeccCCCcceEEe-cccceee-------ehHHHhh-h
Confidence 34555544456678899986554443333 57789999988643332211 1122111 1111100 1
Q ss_pred CeeEEEEEcCCCcEEEEEcCc
Q 004298 173 RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~ 193 (763)
....+.+.+.||+|++|+|+.
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhhcccCCCCceeeecccc
Confidence 123577888999999998764
No 304
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.011 Score=65.04 Aligned_cols=101 Identities=14% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCeEEEEEcc--CceEEEec--CCCcEEEEEEccCCCEEEEEE---cCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATE---DSKILLHRFN--WQRLWTIS--PGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~--~~~v~~~~--~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve 91 (763)
..|..++|-|.|+.+++-+. ..++.+|.++ ..+..-++ .....+.+-|+|.|++++++. ..|.+..+|..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 34889999999999887543 3568888874 22211111 335678899999999998875 57899999987
Q ss_pred CCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
...+...-.......+.+.|.|.|+++++++
T Consensus 526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 526 YADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hhhhhhccCccccccccceECCCCCEEEEee
Confidence 5333322211124567899999999999886
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.026 Score=64.48 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccC------CC------EEEEEEcCCcEEEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPD------GK------AIAVGLEDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspD------G~------~Lasg~~Dg~V~lwd 89 (763)
-.++.|+|.| ++|.|+.. .|.|-+. .-|.+..+. |...|+.+.|.|- +. .||++.-.|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4568999876 67777754 4666665 778888776 6778999999872 22 578888899999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCC---C-ceeccCCCCCcccCCceeecCCCC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDA---Q-PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~---~-~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
...+..+..+..|..+|..+.|-+.. + .++.-. ...++-+|+..+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh------~ss~lvLwntdt 144 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH------GSSTLVLWNTDT 144 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec------CCcEEEEEEccC
Confidence 99999999999899999999997643 2 222222 355677776544
No 306
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.47 E-value=0.026 Score=61.26 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=67.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCC-EEEEEE-cCCcEE
Q 004298 20 VASQIKIAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK-AIAVGL-EDGTIT 86 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~-~Lasg~-~Dg~V~ 86 (763)
.|+.+.-++++|+++.+.+.. ..+.|.+++. +++++..+.-+..+..++++|||+ .|.+.. .++.|.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 456667799999998877743 2257999999 777888888899999999999999 777776 688999
Q ss_pred EEEccCCeEEEEec
Q 004298 87 LHDVENGKLLRSLK 100 (763)
Q Consensus 87 lwdve~g~~~~~l~ 100 (763)
++|+.+++.++++.
T Consensus 326 ViD~~t~k~i~~i~ 339 (352)
T TIGR02658 326 IFDAETGKELSSVN 339 (352)
T ss_pred EEECcCCeEEeeec
Confidence 99999999999883
No 307
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.46 E-value=0.026 Score=58.93 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEcc----CC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVE----NG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----~g 93 (763)
+.|.....-|..+-+.+++.|.+++||-- .+|.--.+.| ..+++++.++++...|.+|-.+|++.-+.+. ..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 34677777788888999999999999976 4555445543 4678999999999999999999999988753 23
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..++.+..|...|..+.|+.....+.+.+
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~ 133 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTG 133 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEec
Confidence 34566678888999888887766666654
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.43 E-value=0.005 Score=63.05 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---C-ceEEEecCCC------cEEEEEEcc-CCCEEEEEEcCCcEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFN---W-QRLWTISPGK------SVTSLCWRP-DGKAIAVGLEDGTITL 87 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~-~~v~~~~~~~------~V~~l~wsp-DG~~Lasg~~Dg~V~l 87 (763)
..|..|.+++++.+...+.++ +|=.|.+|++. + -.+..++|.. -|++..|+| ....+.-.++.|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 445668899999988877654 57789999982 2 2455565432 488999999 4568888999999999
Q ss_pred EEccCCeE------EE--Ee--------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC---CCc
Q 004298 88 HDVENGKL------LR--SL--------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM---PGL 148 (763)
Q Consensus 88 wdve~g~~------~~--~l--------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l---~~~ 148 (763)
.|++.... +. ++ ..-.+.|..+.|+++|+++++-+ --++++||......++ +.+
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEecccccCCceeechH
Confidence 99983211 00 11 11235788899999999999874 6789999987632222 211
Q ss_pred ccCC--cccccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 149 VSGD--TGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 149 ~s~~--~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
..-. ..-..+.+..+..+...++.+...+++|+..+..-+|-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 1100 01112234445556666666767788888777766663
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.39 E-value=0.0017 Score=72.37 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=97.2
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCeEEEEEc--cCceEEEec--CCCcEEEEEEcc-CCCEEEEEE----cCCcEEEEEcc
Q 004298 23 QIKIAEWNPEK--DLLAMATEDSKILLHRF--NWQRLWTIS--PGKSVTSLCWRP-DGKAIAVGL----EDGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l--~~~~v~~~~--~~~~V~~l~wsp-DG~~Lasg~----~Dg~V~lwdve 91 (763)
.+.|++|+-+. .++|+|..+|.|.+-.+ +-..-|.+. +-...++++|++ |...||.|- .|..+.|||++
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 47888887655 48899999999977666 111123332 345789999999 888899886 47789999998
Q ss_pred CC--eEE--EEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-ccCCcccccCCcccccc
Q 004298 92 NG--KLL--RSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-VSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 92 ~g--~~~--~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-~s~~~~~~~~~~~~~~~ 165 (763)
++ .+. ..+.+ .......++|-.+.+.+.+|. ..+.+.++|.+......... ...+.+
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm------~sr~~~ifdlRqs~~~~~svnTk~vqG----------- 200 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM------TSRSVHIFDLRQSLDSVSSVNTKYVQG----------- 200 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhccc------ccchhhhhhhhhhhhhhhhhhhhhccc-----------
Confidence 76 221 12222 334566899998888888887 67889999988532211100 001111
Q ss_pred eecccCC-CeeEEEEEcCCCcEEEEEc
Q 004298 166 LANSSHQ-RFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 166 ~~~~~~~-~~~~L~sgs~DG~I~lw~~ 191 (763)
+. .++ ..+++++.. ||.|.+|+.
T Consensus 201 ~t--Vdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 201 IT--VDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred ce--ecCCCCCceeccc-cCceeeccc
Confidence 11 122 446777655 999999983
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.39 E-value=0.033 Score=63.24 Aligned_cols=183 Identities=12% Similarity=0.136 Sum_probs=115.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEecC--CCcEEEEEEccCCC--EEEEEEcCCcEEEEEcc---C
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTISP--GKSVTSLCWRPDGK--AIAVGLEDGTITLHDVE---N 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~~--~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve---~ 92 (763)
+++.++..+|.|+-+|+++.-|- .+.++ .+.+-.-+.| .-.|-.+.|+|... +-++..+...-.+|++. +
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 34888999999999999887774 44555 3433322222 22467788988543 56666667777789875 2
Q ss_pred CeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+-..+.+|...|+.+.|+|+.. .+++++ -|..+..||++.+..+......-+.+.. .+.|..
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcs------vdt~vh~wd~rSp~~p~ys~~~w~s~as--------qVkwny- 168 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCS------VDTYVHAWDMRSPHRPFYSTSSWRSAAS--------QVKWNY- 168 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeecc------ccccceeeeccCCCcceeeeecccccCc--------eeeecc-
Confidence 334445678999999999999875 567777 7999999999986555444333332221 233332
Q ss_pred CCeeEEEEEcCCCcEEEEEc--Cceeeeeeeecccc-----------cccccCCCCCceeeec
Q 004298 172 QRFSILCSGDKDGSICFNIF--GIFPIGKINIHKFH-----------VAIPNADEQGTCRLLN 221 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~--~~~~ig~~~i~~~~-----------~~~~s~~~~~~~~l~~ 221 (763)
.+.+++++ +....|.+|+. |+-+...+..+... ....+.+.+++++.|+
T Consensus 169 k~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~ 230 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD 230 (1081)
T ss_pred cCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence 34455655 44667888873 33343333322111 1123677889999997
No 311
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.007 Score=71.42 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=73.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCceEE---EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFNWQRLW---TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~---~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
++-.-.+-.+|.|+..|.|...+.+|..-| .-..+.+|++++|+.||++++.|..+|.|.+||+.+++.++.+..|.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 333345667899999999999888775333 33345789999999999999999999999999999999999988776
Q ss_pred CceeE---EEeecCCCceecc
Q 004298 104 VAVVC---LNWEEDAQPSKND 121 (763)
Q Consensus 104 ~~V~~---l~ws~~~~~l~s~ 121 (763)
.+.+. +.|..++..+.++
T Consensus 173 ap~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEc
Confidence 65544 4555555545444
No 312
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.31 E-value=0.23 Score=51.35 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEec-CC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e--
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTIS-PG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K-- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~-~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~-- 94 (763)
..+..++|+|+.+ ++|+....+.|.-++.+|+.+..+. .+ +-.-+|++.-+|+++++.-.++.+.++++... .
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~ 101 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD 101 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence 3599999999765 6666667788888888888887775 22 45788999888887777667999999998421 1
Q ss_pred --EEEEec-----ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc--CCcccccc
Q 004298 95 --LLRSLK-----SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD--DSEDSFRE 165 (763)
Q Consensus 95 --~~~~l~-----~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~--~~~~~~~~ 165 (763)
...++. .++..+-.++|.+.+..+..+- +..-..++..................+.. .....+..
T Consensus 102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k------E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK------ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp EEEEEEEE---S---SS--EEEEEETTTTEEEEEE------ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred hhhceEEecccccCCCcceEEEEEcCCCCEEEEEe------CCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 112222 2345689999999866544443 33333343322100000000000000000 00001112
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+... ...+++++..+.+..+..++........+.+....... ...+ ..--.++|.+|| .|+++.+
T Consensus 176 l~~~-p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl-----~~~~----~QpEGIa~d~~G-~LYIvsE 240 (248)
T PF06977_consen 176 LSYD-PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL-----SKDI----PQPEGIAFDPDG-NLYIVSE 240 (248)
T ss_dssp EEEE-TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG------SS-------SEEEEEE-TT---EEEEET
T ss_pred eEEc-CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc-----cccc----CCccEEEECCCC-CEEEEcC
Confidence 2222 24567888888888888887665566666544321100 0000 013368999998 5666654
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.28 E-value=0.55 Score=48.45 Aligned_cols=183 Identities=14% Similarity=0.059 Sum_probs=98.7
Q ss_pred eEEEEEc-CCCCEEEEEeCCCeEEEEEccCceE---EEec----CCCcEEEEEEccCCCEEEEEEcC--------CcEEE
Q 004298 24 IKIAEWN-PEKDLLAMATEDSKILLHRFNWQRL---WTIS----PGKSVTSLCWRPDGKAIAVGLED--------GTITL 87 (763)
Q Consensus 24 V~~l~~s-P~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~----~~~~V~~l~wspDG~~Lasg~~D--------g~V~l 87 (763)
...+++. +++.++ ++...+ +.+++.....+ .... +....+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 4556677 665544 455444 45558744433 3332 23467899999999977765543 55777
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc--ccc
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED--SFR 164 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~--~~~ 164 (763)
++.. ++...... .-...+.|+|+|+++.+. +.+ ..+.+..++.......+.. ...+...... ..+
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSN----RRVFIDFPGGPGYPD 187 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEE----EEEEEE-SSSSCEEE
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeeccc------ccceeEEEeccccccceee----eeeEEEcCCCCcCCC
Confidence 7766 55444333 245678999999998664 333 4555555555421111000 0000000000 011
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe-cCCCCEEEEEe
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL-SKDLFHLTVLC 240 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~-SpDg~~Llv~~ 240 (763)
-+ +.+.++++.++....|.|..++-+...+..+.+.. ..+++++| -+|++.|++.+
T Consensus 188 G~--~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~------------------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 188 GL--AVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPV------------------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EE--EEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SS------------------SSEEEEEEESTTSSEEEEEE
T ss_pred cc--eEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCC------------------CCEEEEEEECCCCCEEEEEe
Confidence 12 23456677777777788888775544455543321 13668899 47888888875
No 314
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.007 Score=66.09 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc--Cc------eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN--WQ------RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~------~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+|..++--.+.+-+++++.|.+|++|.+. |. .-|++. |.++|..+.|-.|-++++++ ||.|.+||.--|
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig 814 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG 814 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccccc
Confidence 46666555566778899999999999982 22 345554 88999999999998888755 899999998777
Q ss_pred eEEEEecc--cCCceeEEEeecC--CCce-eccCCCCCcccCCceeecCCCCCCCC--CCCc-ccCCcccccCCcccccc
Q 004298 94 KLLRSLKS--HTVAVVCLNWEED--AQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGL-VSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 94 ~~~~~l~~--h~~~V~~l~ws~~--~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~-~s~~~~~~~~~~~~~~~ 165 (763)
+.+.+... ..+.+..+..-++ ...+ +.++ ...+++++|.+..-.. +..- ..+.. .....
T Consensus 815 r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs------aeSTVKl~DaRsce~~~E~kVcna~~Pn-------a~~R~ 881 (1034)
T KOG4190|consen 815 RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS------AESTVKLFDARSCEWTCELKVCNAPGPN-------ALTRA 881 (1034)
T ss_pred chhHhhhcCcccCCCceeEecccCcchheeeecc------chhhheeeecccccceeeEEeccCCCCc-------hheeE
Confidence 76654321 1223333333333 2233 3334 5778889888752110 0000 00000 11112
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+ ...+.++.|+.|-++|+|.+.+.+.
T Consensus 882 i--aVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 882 I--AVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred E--EeccCcchhhHHhcCCcEEEEecCC
Confidence 2 2347788999999999999887443
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.21 E-value=0.03 Score=56.34 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=75.3
Q ss_pred ccCCCEEEEEEcCCcEEEEEccCC-eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 70 RPDGKAIAVGLEDGTITLHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 70 spDG~~Lasg~~Dg~V~lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
+--+..+++|+.||.+.+.+.++- ...+++..-...-.+......+.++.++.-.... .-+..+.|+.++...-.+..
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n-~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN-AQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe-eccceeeecccccccccccc
Confidence 445678999999999999998751 1222232222222233344455555554311111 12334556666543322222
Q ss_pred ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEE
Q 004298 149 VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVA 228 (763)
Q Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~ 228 (763)
..... +..++..+ .+.+++++|+.||.+-+|+.+.. ..+.. .++.+.++|..+-
T Consensus 177 ~~~~~---------v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~---~~p~S-------------~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 177 KALDA---------VTALCSHP-AQQHLVCCGTDDGIVGLWDARNV---AMPVS-------------LLKAHKAEIWEVH 230 (319)
T ss_pred ccccc---------chhhhCCc-ccccEEEEecCCCeEEEEEcccc---cchHH-------------HHHHhhhhhhhee
Confidence 22111 11222222 34579999999999999986543 22111 1222234555666
Q ss_pred ecC-CCCEEEEEeecC
Q 004298 229 LSK-DLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~Sp-Dg~~Llv~~~d~ 243 (763)
|.| ++.+|+++++|+
T Consensus 231 FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDG 246 (319)
T ss_pred ccCCCchheeEecCCC
Confidence 665 455666665554
No 316
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.039 Score=60.74 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=112.1
Q ss_pred cCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecC---------------CC---cEEEEEEccCCCE-
Q 004298 16 FDKPVASQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISP---------------GK---SVTSLCWRPDGKA- 75 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~---------------~~---~V~~l~wspDG~~- 75 (763)
++....+.|.++++..-++ +|+.+. +.++|+|-+..-|+.... ++ +-..+-...+.++
T Consensus 271 f~d~s~~~i~sl~~~a~~NS~Lvv~~--~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnli 348 (644)
T KOG2395|consen 271 FEDESEGGIGSLDEGALDNSFLVVGY--GNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLI 348 (644)
T ss_pred hhHhhhcccchhhhcccCCceEEecc--cceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceE
Confidence 3334445678888876444 454443 337777765443433110 11 1113334445543
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCC-CCCCcccCCc
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDT 153 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~ 153 (763)
+..|..-..++-.|++.|+++...+.|.. |+-+.+.|+...- .+.........+..+.-||++-.-. .+.- ..++
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-~q~k- 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-VQSK- 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee-eecc-
Confidence 45566667889999999999999988765 8888888886431 1122234445688888898874211 1100 0000
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
.+.. ...+.++. ...+ -++++|+.+|.|++|+- ++.-.-+. ++. ...+|..+..+.||
T Consensus 426 qy~~--k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdr----i~~~AKTA----lPg---------LG~~I~hVdvtadG 483 (644)
T KOG2395|consen 426 QYST--KNNFSCFA--TTES-GYIVVGSLKGDIRLYDR----IGRRAKTA----LPG---------LGDAIKHVDVTADG 483 (644)
T ss_pred cccc--ccccceee--ecCC-ceEEEeecCCcEEeehh----hhhhhhhc----ccc---------cCCceeeEEeeccC
Confidence 0110 11111221 1123 47999999999999973 33221111 111 12357888899999
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
++++..|..-
T Consensus 484 Kwil~Tc~ty 493 (644)
T KOG2395|consen 484 KWILATCKTY 493 (644)
T ss_pred cEEEEecccE
Confidence 9999888643
No 317
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.14 E-value=0.013 Score=39.53 Aligned_cols=30 Identities=47% Similarity=0.688 Sum_probs=27.1
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+...|.++.|+|+++++++|+.||.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 566899999999999999999999999996
No 318
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.08 E-value=0.24 Score=44.00 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=63.0
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNP---EK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP---~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|++++++. +| +-|++|+.|..|++|+-. +.++.+.....|++++-... ..|+.|..+|+|-+|+- ...+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeee
Confidence 66777665 33 578899999999999965 57888888888999887766 57999999999999984 3344455
Q ss_pred cccCCceeEEEee
Q 004298 100 KSHTVAVVCLNWE 112 (763)
Q Consensus 100 ~~h~~~V~~l~ws 112 (763)
+. ...++++.+.
T Consensus 78 KS-K~~~~~~~~~ 89 (111)
T PF14783_consen 78 KS-KNQVTSMAFY 89 (111)
T ss_pred cc-CCCeEEEEEE
Confidence 54 3346666654
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.038 Score=63.63 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=74.1
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccC-----CCEEEEEEcCCcEEEEEcc---CCeEEEEeccc
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPD-----GKAIAVGLEDGTITLHDVE---NGKLLRSLKSH 102 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspD-----G~~Lasg~~Dg~V~lwdve---~g~~~~~l~~h 102 (763)
+|.++|+|+.||+|.|-.+ +.+....+.-+.++.+++++|| .+.+++|+.-| +.++.-. +...+ .+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecC
Confidence 4899999999999999888 6666666777789999999998 56899999988 6666522 22222 34445
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++|.++.|. |.+++-++ |--++++|...
T Consensus 160 eG~I~~i~W~--g~lIAWan-------d~Gv~vyd~~~ 188 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWAN-------DDGVKVYDTPT 188 (846)
T ss_pred ccceEEEEec--CcEEEEec-------CCCcEEEeccc
Confidence 6899999997 66777764 55678887654
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.05 E-value=0.21 Score=54.71 Aligned_cols=58 Identities=19% Similarity=0.429 Sum_probs=41.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-------------------cEEEEEEccCCCEEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-------------------SVTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-------------------~V~~l~wspDG~~Lasg~ 80 (763)
..+....|||+|+.+|.+. ++.|++++..+.....+.+++ .-.++.|||||++||..-
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 4588999999999999886 578999988555555554211 236789999999999865
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.05 E-value=0.059 Score=55.23 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=67.4
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEEc-cCceEEEe--------------------
Q 004298 11 PFQLQFDKPVASQIKIAEWNPEKDLLAMATED-----------SKILLHRF-NWQRLWTI-------------------- 58 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~D-----------g~V~v~~l-~~~~v~~~-------------------- 58 (763)
-+.+.+....|.+|.++.|+|.-++|.+|+.. .-+..||+ ++.+-+..
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 34556677778899999999999988887632 13678887 43321111
Q ss_pred c----------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 59 S----------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 59 ~----------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
. ....|..+..||||+.||+...+|.|.+|++.+-+..+..+.
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 0 134588999999999999999999999999987766665544
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.018 Score=66.22 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
-.+++++|+|..-.||.|-.-|.+.+|..+...-.++. |...|..+.|||+|..++++..-|.|.+|...
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34678999999999999999999999999766666654 77889999999999999999999999999865
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.82 E-value=0.42 Score=50.39 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=71.3
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEEcc--CceEEEec-CCCcEEEEEEccCCCEEEEEEc-----------------
Q 004298 27 AEWNPEKDLLAMAT-----EDSKILLHRFN--WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE----------------- 81 (763)
Q Consensus 27 l~~sP~~~lLA~~s-----~Dg~V~v~~l~--~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~----------------- 81 (763)
-.|||+|++|.+.= ..|.|-||+.. .+++-.+. +|-....+.|.|||+.|+++-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 68999999988753 34789999995 56777776 4555677889999998888741
Q ss_pred -CCcEEEEEccCCeEEEEec----ccCCceeEEEeecCCCceec
Q 004298 82 -DGTITLHDVENGKLLRSLK----SHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 82 -Dg~V~lwdve~g~~~~~l~----~h~~~V~~l~ws~~~~~l~s 120 (763)
+.++...|..+|+++.+.. -|...|.+++|.++|.....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a 179 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA 179 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEE
Confidence 2346677888999887733 37789999999999875544
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.16 Score=58.71 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
+.+++++ +..+|.|+.+|.|+++..++..-..+.|... ..+|.++|+|+.||+|.|-.+-+.+..+++.- .
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~ 112 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-K 112 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-C
Confidence 5556665 6789999999999999988775222233332 66899999999999999999999888887754 5
Q ss_pred CceeEEEeecC-----CCceeccC
Q 004298 104 VAVVCLNWEED-----AQPSKNDF 122 (763)
Q Consensus 104 ~~V~~l~ws~~-----~~~l~s~s 122 (763)
.++.+++++|+ .+.+++|+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG 136 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGG 136 (846)
T ss_pred CcceeEEeccchhhhhhhheeecC
Confidence 79999999998 35667776
No 325
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.71 E-value=0.13 Score=57.57 Aligned_cols=98 Identities=23% Similarity=0.358 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCEEEEEe-CCC--eEEEEEccCceEEEecCCCcE-EEEEEccCCCEEEEEEcC-C--cEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDS--KILLHRFNWQRLWTISPGKSV-TSLCWRPDGKAIAVGLED-G--TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg--~V~v~~l~~~~v~~~~~~~~V-~~l~wspDG~~Lasg~~D-g--~V~lwdve~g~~~ 96 (763)
-...+|||+|+.+|.+. .|| .|+++++.++.++.+.++..+ +.-.|+|||+.|+..++. | .|.+++.+.+..
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence 34578999998888654 445 477778877777776655433 357899999999888743 3 467777775544
Q ss_pred EEecccCCceeEEEeecCCCceeccC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+......-.+-.|+|||+.++..+
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 44443333333889999999887665
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.13 Score=55.62 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEc-cCceEEEecCCCcEEEEEEcc-CC---CEEEEEE-cCCcEEEEEccCC--
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRF-NWQRLWTISPGKSVTSLCWRP-DG---KAIAVGL-EDGTITLHDVENG-- 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wsp-DG---~~Lasg~-~Dg~V~lwdve~g-- 93 (763)
-|.+++.+-++-++.+++. |..++++++ +...+--++...-...++|.. .| ..+|++. .+|.+.++|-...
T Consensus 55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 3667788889999999777 999999997 333222222111112233322 22 1455554 7899999996532
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc----ccCCcccccCCcccccceecc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL----VSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~----~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+....-.-|.++|.++.+.+.+....+.. ..|.|..|...+........ ....+....-........++.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD------~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSID------ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred ccceecccccCceEEEEeeccccceeecc------ccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 33444456899999999999998887775 67899999877422111110 001111110001112223345
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeee-eee--cccccccccCCCCCceeeec------------------cceeeEE
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGK-INI--HKFHVAIPNADEQGTCRLLN------------------ASIYKVA 228 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-~~i--~~~~~~~~s~~~~~~~~l~~------------------~~I~~v~ 228 (763)
+++.+..+.+-..|.+|+++.+..-.... ++- ........ ..+.+-+ ..-..+.
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k-----s~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK-----SPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc-----cccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 56777778888899999988643321100 000 00000000 0111100 1234578
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccccc
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFSK 269 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~ 269 (763)
|...|++|+..+- -++.++.++++...+
T Consensus 284 fdes~~flly~t~-------------~gikvin~~tn~v~r 311 (558)
T KOG0882|consen 284 FDESGNFLLYGTI-------------LGIKVINLDTNTVVR 311 (558)
T ss_pred EcCCCCEEEeecc-------------eeEEEEEeecCeEEE
Confidence 8888999988753 279999999986654
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.56 E-value=0.13 Score=45.71 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=61.2
Q ss_pred EEEEEEcc---CC-CEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 64 VTSLCWRP---DG-KAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 64 V~~l~wsp---DG-~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|+++++.. || +.|++|+.|..|++|+- .+.+..++. .+.|+++.-...+++...-........++..|+|...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeec
Confidence 67777665 44 48999999999999983 477777765 5678888777666544433211222234455555544
Q ss_pred CCCCCCCCcccCCcccccCCcccccceecccC-CCeeEEEEEcCCCcEEE
Q 004298 140 PRIPQMPGLVSGDTGFTDDSEDSFRELANSSH-QRFSILCSGDKDGSICF 188 (763)
Q Consensus 140 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~L~sgs~DG~I~l 188 (763)
++... .+. ...... +...-|++|-++|.|-+
T Consensus 79 SK~~~--------~~~----------~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 SKNQV--------TSM----------AFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCe--------EEE----------EEEcCCCCCceEEEEEecCCeEEe
Confidence 32111 111 011111 23357888988998753
No 328
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.53 E-value=0.64 Score=47.96 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEc-cCCCEEEEEEcCCcEEEEEccCCeEEEEecc--
Q 004298 26 IAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWR-PDGKAIAVGLEDGTITLHDVENGKLLRSLKS-- 101 (763)
Q Consensus 26 ~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~ws-pDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~-- 101 (763)
.+.|.+ ++.++++-...+.|+.|+..++....+.... ..++++. ++|++ .++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeeccC
Confidence 578998 7788887778899999999777665554333 6777777 67554 4444444 45569998866544332
Q ss_pred ---cCCceeEEEeecCCCceeccC
Q 004298 102 ---HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 102 ---h~~~V~~l~ws~~~~~l~s~s 122 (763)
.....+.+++.++|.+.++..
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~ 104 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDS 104 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEE
T ss_pred CCcccCCCceEEEcCCCCEEEEec
Confidence 235678899999998766654
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.095 Score=56.61 Aligned_cols=195 Identities=12% Similarity=0.026 Sum_probs=112.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec----CCCcEEEEEEccCCCEEEEEEc-CCcEEEEEccCCeEEEEecc
Q 004298 28 EWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS----PGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 28 ~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~----~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+....+++.+++.||.++.|.-.. .-+--+. |-..|.+++-+-||..+++++. |..++++|+++-..+.-++.
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 3444568999999999998888754 2222222 4456788999999999999887 99999999998766544443
Q ss_pred cCCceeEEEeec-CC---CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 102 HTVAVVCLNWEE-DA---QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 102 h~~~V~~l~ws~-~~---~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
. .....+.|.. .| ..++.+. ..++.+.++|......+......-|...+ ......+.++.+
T Consensus 95 ~-~lPg~a~wv~skGd~~s~IAVs~-----~~sg~i~VvD~~~d~~q~~~fkklH~sPV---------~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 95 V-DLPGFAEWVTSKGDKISLIAVSL-----FKSGKIFVVDGFGDFCQDGYFKKLHFSPV---------KKIRYNQAGDSA 159 (558)
T ss_pred c-cCCCceEEecCCCCeeeeEEeec-----ccCCCcEEECCcCCcCccceecccccCce---------EEEEeeccccce
Confidence 1 1222333422 22 1233222 36788888887654322211111111111 112234667789
Q ss_pred EEEcCCCcEEEEEcCc---eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 178 CSGDKDGSICFNIFGI---FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~---~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
++....|.|..|.... |+-..+... ..+...--...-......++.|||+|..+.....|
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~-----~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFE-----LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred eeccccceeEeecCCCcccCcccccccc-----ccccchhhcccccccCccceEEccccCcccccCcc
Confidence 9999999999997542 222222110 00000000000001235678999999999877644
No 330
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.49 E-value=0.42 Score=55.13 Aligned_cols=94 Identities=22% Similarity=0.414 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCC------------CEEEEEeCCCeEEEEEc--cCceEEEecCCCcEEEEEEcc---CC-CEEEEEEcCC
Q 004298 22 SQIKIAEWNPEK------------DLLAMATEDSKILLHRF--NWQRLWTISPGKSVTSLCWRP---DG-KAIAVGLEDG 83 (763)
Q Consensus 22 ~~V~~l~~sP~~------------~lLA~~s~Dg~V~v~~l--~~~~v~~~~~~~~V~~l~wsp---DG-~~Lasg~~Dg 83 (763)
..|+.+.|.|-. -+||++...|.|.+|+. ..+..|--.+.+++..++|-| |. .+|++-....
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 469999998731 25677888899999998 344556556788899998876 55 4778888889
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCC
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~ 115 (763)
++.+|+..+|+...++........|+.+.|-.
T Consensus 136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred EEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 99999999999998887766778889988854
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.41 E-value=0.032 Score=37.50 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=33.5
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
++.+..+..|...|.++.|.+++..+++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS------DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec------CCCeEEEcC
Confidence 456677778889999999999988888888 899999986
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=0.018 Score=66.47 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEE--cCCcEEEEEcc-CCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL--EDGTITLHDVE-NGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdve-~g~~~ 96 (763)
..-+|++|+-..+.|++|+..|.|++|+. .|+..-..+ |+..|+.+.=+-||..+.+.+ +.....+|++. ++...
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence 34789999999999999999999999999 676666555 777777777777777655443 22345677764 45555
Q ss_pred EEec
Q 004298 97 RSLK 100 (763)
Q Consensus 97 ~~l~ 100 (763)
|+++
T Consensus 1182 Hsf~ 1185 (1516)
T KOG1832|consen 1182 HSFD 1185 (1516)
T ss_pred cccc
Confidence 5554
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.08 E-value=0.17 Score=60.09 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=84.0
Q ss_pred CCCEEEEE-EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcc
Q 004298 72 DGKAIAVG-LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV 149 (763)
Q Consensus 72 DG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~ 149 (763)
|-++|... .....++-+|++.|+++..++.|... .-..+.|+.++- .+......+..+..+..||++-...++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-S 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-c
Confidence 34444443 35688999999999999999887643 233455554321 11112233346788888998853222211 0
Q ss_pred cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe
Q 004298 150 SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL 229 (763)
Q Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~ 229 (763)
.. ..+. ....+.++ +...+ -.+|+|+.+|.|++|+ .+|.- ....++.. ..+|..+..
T Consensus 570 ~~-k~Y~--~~~~Fs~~--aTt~~-G~iavgs~~G~IRLyd----~~g~~----AKT~lp~l---------G~pI~~iDv 626 (794)
T PF08553_consen 570 QS-KQYS--SKNNFSCF--ATTED-GYIAVGSNKGDIRLYD----RLGKR----AKTALPGL---------GDPIIGIDV 626 (794)
T ss_pred cc-cccc--cCCCceEE--EecCC-ceEEEEeCCCcEEeec----ccchh----hhhcCCCC---------CCCeeEEEe
Confidence 00 0111 11112222 12233 4799999999999997 23321 11112211 247889999
Q ss_pred cCCCCEEEEEeecC
Q 004298 230 SKDLFHLTVLCSGQ 243 (763)
Q Consensus 230 SpDg~~Llv~~~d~ 243 (763)
|.||+++++.|..-
T Consensus 627 t~DGkwilaTc~ty 640 (794)
T PF08553_consen 627 TADGKWILATCKTY 640 (794)
T ss_pred cCCCcEEEEeecce
Confidence 99999999998754
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.26 Score=57.49 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=86.3
Q ss_pred EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCC
Q 004298 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQM 145 (763)
Q Consensus 67 l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l 145 (763)
-+|++.+..++.|+.+|.|.+.+- .-+.++.++.+...|...-|.-++ .++++-+.+.-+ ....+++|+..+.-..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~-np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG-NPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC-CceEEEEecccccCCCC
Confidence 468999999999999999998883 355567888877774444455555 455554422111 12268999887531111
Q ss_pred -CCcccCCcccc-cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-ee-eeeecccccccccCCCCCceeeec
Q 004298 146 -PGLVSGDTGFT-DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IG-KINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 146 -~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig-~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
|.-...+..+. ..............+.+.+.+|+|-.||.|..+--+... .| ++... . --.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-------~--------~~~ 171 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-------H--------RGK 171 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-------c--------cCC
Confidence 11110011110 000011111122234557889999999999987422211 01 11000 0 011
Q ss_pred cceeeEEecCCCCE-EEEEeecC
Q 004298 222 ASIYKVALSKDLFH-LTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~-Llv~~~d~ 243 (763)
.+|+.+++-.|++. ++++++..
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~ 194 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQ 194 (933)
T ss_pred CCceeeEEecCCceeEEEEecce
Confidence 46888888888887 45555543
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.082 Score=56.40 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 60 PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 60 ~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
++..|..++|+|... ++..++.+.+|+|.|+++..++..+..| ..+++++|.-|....+-++ ...|.+.++|+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaG-----l~nG~VlvyD~ 265 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAG-----LQNGMVLVYDM 265 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEe-----ccCceEEEEEc
Confidence 456799999999777 7888999999999999999999988887 8999999998886554443 27899999998
Q ss_pred CCC
Q 004298 139 APR 141 (763)
Q Consensus 139 ~~~ 141 (763)
+.+
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 864
No 336
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.96 E-value=0.062 Score=40.05 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=30.1
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
...|.+++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5553
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.91 E-value=0.33 Score=51.14 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCe-EEEEEc-cCceEEEecCC-Cc--EEEEEEccCCCEEEEEE-----cCCcEEE
Q 004298 19 PVASQIKIAEWNP-EKDLLAMATEDSK-ILLHRF-NWQRLWTISPG-KS--VTSLCWRPDGKAIAVGL-----EDGTITL 87 (763)
Q Consensus 19 ~~~~~V~~l~~sP-~~~lLA~~s~Dg~-V~v~~l-~~~~v~~~~~~-~~--V~~l~wspDG~~Lasg~-----~Dg~V~l 87 (763)
++|.+...++.+| ....+|.+-.-|+ ..+|+. +++....+... +. --.-+|||||++|.+.- ..|.|-|
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence 5788899999999 4567777777775 678888 56555555422 21 12478999999998864 4578999
Q ss_pred EEcc-CCeEEEEecccCCceeEEEeecCCCceeccCCC
Q 004298 88 HDVE-NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGN 124 (763)
Q Consensus 88 wdve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~ 124 (763)
||.. +-+.+..+..|.-.-..+.|.|||+.++.+.+.
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 9998 556777888887777889999999776665443
No 338
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.87 E-value=0.74 Score=46.86 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=53.4
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEe-cCC----CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTI-SPG----KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~-~~~----~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
.++.+.+++.++.|..++. +|+.+|.. ... ..........+++.++++..+|.|..+|.++|+.+.....+.
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 4566677778889999996 99999995 321 122333344458899999999999999999999988876643
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.73 E-value=0.37 Score=55.52 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=60.0
Q ss_pred CeEEEEEc-c-----CceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeE------------EEEecccC
Q 004298 43 SKILLHRF-N-----WQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKL------------LRSLKSHT 103 (763)
Q Consensus 43 g~V~v~~l-~-----~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~------------~~~l~~h~ 103 (763)
+.|.+.+. + .+.+..+.-++....+.++|||+++.+++ .+++|.++|+++.+. ..+... .
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-G 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-G 374 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-C
Confidence 34555555 2 23344455667788999999999887776 699999999987552 333332 2
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..-...+|.++|....|.. .|..+--|++..
T Consensus 375 lGPLHTaFDg~G~aytslf------~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLF------LDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEe------ecceeEEEehHH
Confidence 2345677888876555443 577777787543
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.53 E-value=0.12 Score=56.69 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=63.6
Q ss_pred cCCCCEEEEEe---------CCCeEEEEEccCceEEEecCC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 30 NPEKDLLAMAT---------EDSKILLHRFNWQRLWTISPG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 30 sP~~~lLA~~s---------~Dg~V~v~~l~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|||+++++... ..+.+.||+++.+.+..+... ..+....|+|||+.+|... ++.|.+++..+++.. .+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-Ee
Confidence 68888877743 245788899977777777654 6788999999999999886 578999998777443 22
Q ss_pred ccc------------------CCceeEEEeecCCCceeccC
Q 004298 100 KSH------------------TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 100 ~~h------------------~~~V~~l~ws~~~~~l~s~s 122 (763)
+.. -+.-..+.|+||++.++...
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 211 12235789999999887754
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.45 E-value=0.28 Score=58.34 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=74.8
Q ss_pred cccceeEeecCCCCCCCeEEEEEcCC-------CCEEEEEeCCCeEEEEEc--cCce-EEE----ecCCCcEEEEEEccC
Q 004298 7 MRVLPFQLQFDKPVASQIKIAEWNPE-------KDLLAMATEDSKILLHRF--NWQR-LWT----ISPGKSVTSLCWRPD 72 (763)
Q Consensus 7 ~~~~~~~~~~~k~~~~~V~~l~~sP~-------~~lLA~~s~Dg~V~v~~l--~~~~-v~~----~~~~~~V~~l~wspD 72 (763)
.++.+-.|...+..| | ..+.|+ .....+|-.+..+..|+. .+.+ ++. +..+...+|++=+.+
T Consensus 513 ~GKVV~eW~~~~~~~--v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~ 588 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIP--V--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED 588 (794)
T ss_pred CCcEEEEeecCCCcc--e--eEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC
Confidence 344444555555432 3 445553 234566777888988887 4544 332 225567889988888
Q ss_pred CCEEEEEEcCCcEEEEEccCCeE-EEEecccCCceeEEEeecCCCceeccC
Q 004298 73 GKAIAVGLEDGTITLHDVENGKL-LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 73 G~~Lasg~~Dg~V~lwdve~g~~-~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
| +||+|+.+|.||+||- .|+. ...+.+-..+|.+|..+.||++++..+
T Consensus 589 G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 589 G-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred c-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 8 7999999999999994 4443 334666678999999999999876544
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.39 E-value=1.3 Score=47.89 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCEEEEEeC---------C-CeEEEEEccCc-----eEE---EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 33 KDLLAMATE---------D-SKILLHRFNWQ-----RLW---TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 33 ~~lLA~~s~---------D-g~V~v~~l~~~-----~v~---~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..++++|+. . |.|.++++... ++. .....+.|++++-- +|+ |++|. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 578888763 2 88999999542 333 23356778888754 444 44444 5899999998877
Q ss_pred -EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeec--CCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 95 -LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF--PPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 95 -~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w--d~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
....-.. ....++++... +.+++.|. ..+.+.++ +..+. .+... +.+.. ...+ ....+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD------~~~sv~~~~~~~~~~--~l~~v-a~d~~-----~~~v--~~~~~ 180 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGD------AMKSVSLLRYDEENN--KLILV-ARDYQ-----PRWV--TAAEF 180 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEE------SSSSEEEEEEETTTE---EEEE-EEESS------BEE--EEEEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEE------cccCEEEEEEEccCC--EEEEE-EecCC-----CccE--EEEEE
Confidence 5443222 23466666665 44666664 34555554 33211 11000 00000 0001 11122
Q ss_pred CCCeeEEEEEcCCCcEEEEEcC
Q 004298 171 HQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
-.+.+.+++++.+|.+.++.+.
T Consensus 181 l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 181 LVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCcEEEEEcCCCeEEEEEEC
Confidence 2122488999999999998654
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.38 E-value=3 Score=42.47 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=81.4
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC
Q 004298 27 AEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV 104 (763)
Q Consensus 27 l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~ 104 (763)
+..+|+. .++..|+..+.+.--+. .|+.+|...-+.++.+-+.- -|.+++.|+..|.+++.++.+|.....+... .
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-E 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-h
Confidence 4445544 67778899999888888 88899998877777654443 6778999999999999999999877776543 2
Q ss_pred cee-EEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 105 AVV-CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 105 ~V~-~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.|. .....+++..+..++ .|++....|...+
T Consensus 94 ~vk~~a~~d~~~glIycgs------hd~~~yalD~~~~ 125 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGS------HDGNFYALDPKTY 125 (354)
T ss_pred hhccceEEcCCCceEEEec------CCCcEEEeccccc
Confidence 333 234567788888888 8999988888764
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.13 E-value=0.21 Score=57.00 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEEe----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+..+..|++..++|.|+..|.|.|+-++. + .++.. .|+..|+|++|++||+.+.+|..-|+|.+..+.+..
T Consensus 78 ~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 78 ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred eEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh
Confidence 356677899999999999999999999832 2 22221 257789999999999999999999999988877621
Q ss_pred ----EEEEecccCCceeEEEeec
Q 004298 95 ----LLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 95 ----~~~~l~~h~~~V~~l~ws~ 113 (763)
..+.+-...+.|..+....
T Consensus 158 ~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 158 AFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred hhccccceeeccCcceEEeeccc
Confidence 1122223356677776653
No 345
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.10 E-value=0.37 Score=53.25 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=65.5
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-ceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~~l~ 110 (763)
++.+.+++.+|.+..++. +|+.+|....... ... ..++..+.+++.||.+..+|..+|+.+........ ......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 456777888999999999 8899998864321 111 23567888888999999999999998766532111 122222
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+..+..++ .++.+.++|..+
T Consensus 318 i--~g~~l~~~~------~~G~l~~~d~~t 339 (377)
T TIGR03300 318 V--VGGYLVVGD------FEGYLHWLSRED 339 (377)
T ss_pred E--ECCEEEEEe------CCCEEEEEECCC
Confidence 2 244555555 688888888654
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.74 E-value=0.24 Score=57.91 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCEEEEEe------CCC--eEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcC------------
Q 004298 23 QIKIAEWNPEKDLLAMAT------EDS--KILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLED------------ 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s------~Dg--~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D------------ 82 (763)
.+...+.||+|+.+|... .|. .|++++..++. ..+..+...+.-.|+|||+.|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 367889999999988766 243 45555553332 333345568889999999988777533
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+.+.+++.++... .....|..+.|+|||..++...
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 233333444333322 2245799999999999876643
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.56 E-value=0.74 Score=51.84 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=69.4
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec-CCCCC
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF-PPAPR 141 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w-d~~~~ 141 (763)
....+.++|+|+++++ +.||.-.|+.....+... .+.-....|.+.+++.+-. ..+++.++ +....
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~-------~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLE-------SSSTIKIYKNFKNE 100 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE--------TTS-EEEEETTEE-
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEE-------CCCeEEEEEcCccc
Confidence 4688999999999999 778888888854333322 1344567898866654433 35667774 33211
Q ss_pred C-CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceee
Q 004298 142 I-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRL 219 (763)
Q Consensus 142 ~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l 219 (763)
. ..+.. ......+. . |.+|...+ ++.|.+|+.... .+.++++
T Consensus 101 ~~k~i~~------------~~~~~~If----~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~v------------------ 144 (443)
T PF04053_consen 101 VVKSIKL------------PFSVEKIF----G-GNLLGVKS-SDFICFYDWETGKLIRRIDV------------------ 144 (443)
T ss_dssp TT-----------------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS------------------
T ss_pred cceEEcC------------CcccceEE----c-CcEEEEEC-CCCEEEEEhhHcceeeEEec------------------
Confidence 1 00000 00111121 1 55666655 448999986643 3444432
Q ss_pred eccceeeEEecCCCCEEEEEeecC
Q 004298 220 LNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 220 ~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|..+.||++|+++++++.+.
T Consensus 145 --~~vk~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 145 --SAVKYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp ---E-EEEEE-TTSSEEEEE-S-S
T ss_pred --CCCcEEEEECCCCEEEEEeCCe
Confidence 1367899999999999998776
No 348
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.54 E-value=0.43 Score=56.02 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEc---------CCcEEEEEcc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE---------DGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~---------Dg~V~lwdve 91 (763)
+|+-+.- +++++.+|...|+|.+-+. +.+.+.++. |.+.|..+ .-.|+.|++++- |..|++||++
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhh
Confidence 4665654 4788899999999999999 455666665 77767654 557788877762 6679999999
Q ss_pred CCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.-+.+.-+..+.++ .-+.|.|.- ..++.++ ..|...+-|...-..+.. +. -.+......+ ..++.
T Consensus 255 mmral~PI~~~~~P-~flrf~Psl~t~~~V~S------~sGq~q~vd~~~lsNP~~----~~-~~v~p~~s~i--~~fDi 320 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS------QSGQFQFVDTATLSNPPA----GV-KMVNPNGSGI--SAFDI 320 (1118)
T ss_pred hhhccCCcccccCc-hhhhhcccccceEEEEe------cccceeeccccccCCCcc----ce-eEEccCCCcc--eeEEe
Confidence 87766655444333 445666643 2233333 345555555322100000 00 0000001112 23445
Q ss_pred CCCeeEEEEEcCCCcEEEEE
Q 004298 171 HQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~ 190 (763)
+++++.|+.|..+|.|++|.
T Consensus 321 Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCceEEEecccCcEeeec
Confidence 67888999999999999995
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.03 E-value=12 Score=38.36 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEE-EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTS-LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~-l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
-|++++.|...|.+++... +|.++|.+..-+.|.+ -...+||..|-.|+.|+..+..|..+..++.+.+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 5788999999999999998 7779999875555433 34578999999999999999999999888887654
No 350
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.03 E-value=0.41 Score=52.89 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV 106 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V 106 (763)
.++.+.+++.+|.|..++. +|+.+|.... +....+... .|..+++++.+|.|+++|..+|+.+.+++.+...+
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 4567777888999999999 7889998742 222222222 56789999999999999999999999887665443
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.83 E-value=1.7 Score=50.93 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCe-EEEEEc-cCceEEEec---------CCCcEEEEEEccCCCEEEEEEcCCcEEEE---E
Q 004298 24 IKIAEWNPEKDLLAMATEDSK-ILLHRF-NWQRLWTIS---------PGKSVTSLCWRPDGKAIAVGLEDGTITLH---D 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~-V~v~~l-~~~~v~~~~---------~~~~V~~l~wspDG~~Lasg~~Dg~V~lw---d 89 (763)
.+...|+|+|+.+++...... +++.+- ....+|.+. .+..|..+.|||||+.+|... +|.|.+- .
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 667899999998888764423 333332 122444221 245799999999999998876 5788773 3
Q ss_pred ccCCeE-E---EEecc-cCCceeEEEeecCCCceec
Q 004298 90 VENGKL-L---RSLKS-HTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 90 ve~g~~-~---~~l~~-h~~~V~~l~ws~~~~~l~s 120 (763)
...|+. + +.+.. -...+..+.|..++.+++.
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEEEE
Confidence 334541 1 11222 2234688999999886543
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.80 E-value=0.49 Score=47.26 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=69.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCc-eEEEec-CCC-cEEE-EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-C
Q 004298 30 NPEKDLLAMATEDSKILLHRFNWQ-RLWTIS-PGK-SVTS-LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-V 104 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~-~~~-~V~~-l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~ 104 (763)
......+++|+.+|.|.+|..+.. ...... .+. .|.+ |.--.++.+..+++.||.|+.|++.-++.+.....|+ .
T Consensus 67 ~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 67 VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 334577889999999999888621 111111 122 2222 2223366688999999999999999888887777776 5
Q ss_pred ceeEEEeecCCCceecc--CCCCCcccCCceeecCCCC
Q 004298 105 AVVCLNWEEDAQPSKND--FGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 105 ~V~~l~ws~~~~~l~s~--s~~~~~~~d~~i~~wd~~~ 140 (763)
++.....+..+.+++.. | .|..+++|++.+
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S------~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTS------HDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccc------cchhhhhcchhh
Confidence 55555555555555554 4 688889998875
No 353
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.43 E-value=15 Score=38.49 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEE-ccCceEEEecC-C-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHR-FNWQRLWTISP-G-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~-l~~~~v~~~~~-~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|.++.|+|+.+.|.+..+...-.|+= .+|+.+.++.- + +...+|.|.-+|++.++--.++.+.++.+..+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 3489999999998877777666554544 48888888762 1 3346788999999988888999999998875532221
Q ss_pred e-----c----cc-CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccC-CcccccCCccccccee
Q 004298 99 L-----K----SH-TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSG-DTGFTDDSEDSFRELA 167 (763)
Q Consensus 99 l-----~----~h-~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~-~~~~~~~~~~~~~~~~ 167 (763)
+ + .+ +.....++|.|....+...- +-+-++++........+..+... .+.. ..--...++
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK------Er~P~~I~~~~~~~~~l~~~~~~~~~~~---~~~f~~DvS 236 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK------ERNPIGIFEVTQSPSSLSVHASLDPTAD---RDLFVLDVS 236 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEE------ccCCcEEEEEecCCcccccccccCcccc---cceEeeccc
Confidence 1 1 12 45677899999876555443 34444444332111111111110 0000 000011111
Q ss_pred -ccc-CCCeeEEEEEcCCCcEEEEEcCceeeeeeeec
Q 004298 168 -NSS-HQRFSILCSGDKDGSICFNIFGIFPIGKINIH 202 (763)
Q Consensus 168 -~~~-~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~ 202 (763)
..+ ...+++|+.+.+++.+.-.+...-+++.+.++
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~ 273 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLT 273 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEec
Confidence 111 23567888888888877666554455555443
No 354
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.05 E-value=0.45 Score=52.82 Aligned_cols=87 Identities=31% Similarity=0.463 Sum_probs=64.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EEc--c------CceEEEec----CCCcEEEEEEc-----------cCCCEEEEE
Q 004298 26 IAEWNPEKDLLAMATEDSKILL---HRF--N------WQRLWTIS----PGKSVTSLCWR-----------PDGKAIAVG 79 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v---~~l--~------~~~v~~~~----~~~~V~~l~ws-----------pDG~~Lasg 79 (763)
.++.+|+++++|.+..+.-+.+ |+. . ....|... ++.+|+++.|- ||...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988776655 422 1 11233322 33678877764 456799999
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeec
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~ 113 (763)
..+|.|++|. ++|..+..-.-|..+|..|....
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999 57988887778899999988754
No 355
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=1.9 Score=50.74 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-----CceEE-EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-----WQRLW-TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-----~~~v~-~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
|.++.+++.|.+-..+|+|-.+|.|..++-+ |.+.- ...-+.+|+++++..||+..........|.+|.+....
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 4568899999999999999999999988852 22222 22245789999999999986666667889999998433
Q ss_pred E-EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 L-LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~-~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+ ...+..|.....|-++++....++.++ +..+.+|+...
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~-------~e~l~fY~sd~ 244 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAG-------SEFLYFYDSDG 244 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEec-------CceEEEEcCCC
Confidence 2 444777788899999987666455543 45677777653
No 356
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.82 E-value=0.65 Score=47.24 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=52.1
Q ss_pred CCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 31 PEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 31 P~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+++..+.+++.++.|..|+. +|+.+|.......+.... ..++..+.++..++.+..+|.++|+.+.+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 35667777789999999998 999999998544322222 235567777778999999999999999884
No 357
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.42 Score=51.21 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEcc-CceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCCeE-EEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRFN-WQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENGKL-LRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~-~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g~~-~~~ 98 (763)
.|..++|||..+ ++..++-+..|.|.++. ...+....-...+++.+|.-|. .+|..|-.+|.|.+||++..+- +..
T Consensus 195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e 274 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLME 274 (463)
T ss_pred hhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhh
Confidence 489999999887 78889999999999994 3444555556889999999865 4777778999999999985432 222
Q ss_pred ecc--cCCceeEEEeec
Q 004298 99 LKS--HTVAVVCLNWEE 113 (763)
Q Consensus 99 l~~--h~~~V~~l~ws~ 113 (763)
+.+ ...+|..++..+
T Consensus 275 ~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 275 LVANVTINPVHKIAPVQ 291 (463)
T ss_pred hhhhhccCcceeecccC
Confidence 221 134566655443
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=18 Score=40.13 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred EEEEEcCCCCE-EEEEeCCCeEEEEEccCceEEE-ecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEEEEe
Q 004298 25 KIAEWNPEKDL-LAMATEDSKILLHRFNWQRLWT-ISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLLRSL 99 (763)
Q Consensus 25 ~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~~v~~-~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~~~l 99 (763)
..++.+|.+.. .+....++.|.+.+....++.. +..+.....++|+|+|+.+.++.. +++|.+.|..+++.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 46788888874 4455556889999975555544 445667789999999998877765 789999999999998886
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..-..+ ..+.+.|+|..+.... ..++.+.+.|...
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~-----~~~~~v~vi~~~~ 191 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTN-----SDDNTVSVIDTSG 191 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEe-----cCCCeEEEEeCCC
Confidence 654445 8899999998655443 2577777777543
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.55 E-value=2.5 Score=46.97 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce--------------------------EEEec-----------------
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR--------------------------LWTIS----------------- 59 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~--------------------------v~~~~----------------- 59 (763)
.|+.+.|+++.--+|++...|.|.||+....+ +-++.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 38999999999899999999999999982111 11221
Q ss_pred --CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE--ecc------cCCceeEEEee
Q 004298 60 --PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS--LKS------HTVAVVCLNWE 112 (763)
Q Consensus 60 --~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~--l~~------h~~~V~~l~ws 112 (763)
..++|++++.|. =-++|+|+.+|.+.|.|++...+++. +.. ....|+++.|+
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 024699999974 45999999999999999998887766 222 23468889887
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.23 E-value=0.61 Score=49.85 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC----------eEEEEEc-cCceEEEecCCCcEEEEEEccCCC-EEEEE-EcCCcEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDS----------KILLHRF-NWQRLWTISPGKSVTSLCWRPDGK-AIAVG-LEDGTITL 87 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg----------~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~-~Lasg-~~Dg~V~l 87 (763)
|++-..+++++..+.|.+....| .|+++++ +++++..+.-+..+.+|..+.|.+ .|... ..++.+.+
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 34555678887665444432211 6888888 788888887666788999999888 44333 46899999
Q ss_pred EEccCCeEEEEecc
Q 004298 88 HDVENGKLLRSLKS 101 (763)
Q Consensus 88 wdve~g~~~~~l~~ 101 (763)
||..+|+.++++..
T Consensus 317 ~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 317 YDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT--EEEEE--
T ss_pred EeCcCCcEEeehhc
Confidence 99999999999864
No 361
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=0.53 Score=55.04 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+....+|++|+-+.++|++|+-.|.|+++++.+|....+..+|+++|+.+.=+.+|....+.+. +...-.-+|+..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss----~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS----SSSPLSALWDAS 1175 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecc----ccCchHHHhccc
Confidence 4567899999999999999999999999999999999999999999999998888876655431 122345678766
Q ss_pred C
Q 004298 140 P 140 (763)
Q Consensus 140 ~ 140 (763)
.
T Consensus 1176 s 1176 (1516)
T KOG1832|consen 1176 S 1176 (1516)
T ss_pred c
Confidence 5
No 362
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.96 E-value=26 Score=42.06 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=57.5
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc---------e-----EEEe-------cCCCcEEEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQ---------R-----LWTI-------SPGKSVTSLC 68 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~---------~-----v~~~-------~~~~~V~~l~ 68 (763)
.++....++...|..+..||+|+++|..+..|-+ |-.+ .|. . .+.+ .++..|..+.
T Consensus 75 q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 75 QKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR 153 (717)
T ss_pred ceeecCCCCceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE
Confidence 3444445555689999999999999999987643 3333 111 1 1111 1334789999
Q ss_pred EccC---CCEEEEEEcCCcEEEEEccCC
Q 004298 69 WRPD---GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 69 wspD---G~~Lasg~~Dg~V~lwdve~g 93 (763)
|+|. +..|++=.+|+++|+||+.+.
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9996 589999999999999999753
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.07 E-value=1.5 Score=48.87 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=75.0
Q ss_pred ccccceeEeecCCCCCCCeEEEEEcCCCC--EE-----EEEeCCCeEEEEEc--cCc-eE-EE----ecCCCcEEEEEEc
Q 004298 6 AMRVLPFQLQFDKPVASQIKIAEWNPEKD--LL-----AMATEDSKILLHRF--NWQ-RL-WT----ISPGKSVTSLCWR 70 (763)
Q Consensus 6 ~~~~~~~~~~~~k~~~~~V~~l~~sP~~~--lL-----A~~s~Dg~V~v~~l--~~~-~v-~~----~~~~~~V~~l~ws 70 (763)
+.++.+-.|.+++. |.-+.+.|+.+ .+ .+|-.+..|.-|+. .+. ++ |. +..+....|.+-.
T Consensus 364 E~GKIVeEWk~~~d----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT 439 (644)
T KOG2395|consen 364 ERGKIVEEWKFEDD----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT 439 (644)
T ss_pred ccceeeeEeeccCC----cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec
Confidence 34455556666666 66777888653 22 23556777777776 333 11 22 2244566777777
Q ss_pred cCCCEEEEEEcCCcEEEEEccCCeEEE-EecccCCceeEEEeecCCCceeccC
Q 004298 71 PDGKAIAVGLEDGTITLHDVENGKLLR-SLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 71 pDG~~Lasg~~Dg~V~lwdve~g~~~~-~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.+| +|++|+.+|.|++||- .+.... -+++-..+|+++..+.+|.++....
T Consensus 440 ~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 440 ESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred CCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 777 8999999999999996 454433 4667778999999999999876543
No 364
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=0.51 Score=56.71 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=73.7
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcc--CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 16 FDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFN--WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~--~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
++++ .-+.++.|+|.- ...|.+..|+.|.|..++ -+.+-.+.-+..++|++|+|-|+.+++|-.+|++.-|-..
T Consensus 152 ~ek~--vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~- 228 (1405)
T KOG3630|consen 152 FEKP--VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS- 228 (1405)
T ss_pred hccc--cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-
Confidence 4444 347789999976 456677789999777763 2233344456778999999999999999999999888744
Q ss_pred CeEEEEecc---c-CCceeEEEeecCCCceec
Q 004298 93 GKLLRSLKS---H-TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 93 g~~~~~l~~---h-~~~V~~l~ws~~~~~l~s 120 (763)
++....+.. . ...|.|+.|-....++++
T Consensus 229 leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 555544432 1 368999999887766554
No 365
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=13 Score=43.40 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCEEEEEeCC----------CeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATED----------SKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D----------g~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
..-++.+|-|--||+.-.+ -.|+||+..|+.+..+. |+ .+..+.|+.+.. |++-..||+|++|++.
T Consensus 35 ~~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 35 YVYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCC-CeeeecccCCce-EEEEeccceEEEeecc
Confidence 3445566666666655444 34888888888777664 43 788999998865 5556789999999976
Q ss_pred CCeEEEEe----cccCCceeEEEeecCCCceeccC
Q 004298 92 NGKLLRSL----KSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 ~g~~~~~l----~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+.+... ......|..+.+..+|-.+.+.+
T Consensus 113 -ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~ 146 (829)
T KOG2280|consen 113 -GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS 146 (829)
T ss_pred -hhhhcccccccccccCceeEEEEecCceEEEecC
Confidence 4443331 11223455555555676666554
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.24 E-value=20 Score=38.43 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=78.8
Q ss_pred cEEEEEEccCCCEEEEEEc---------CCcEEEEEcc-CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 63 SVTSLCWRPDGKAIAVGLE---------DGTITLHDVE-NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~---------Dg~V~lwdve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
..+.+...|||.+-+..-. -..-.||-+. .|..++.+..+-..-+.|+|+||++.+.... ...+.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD-----T~~~~ 186 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD-----TPANR 186 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe-----CCCCe
Confidence 4567888999986655433 1112455554 5667666666555668899999997665442 03345
Q ss_pred eeecCCCCCCCCCCCcccCCcccc--cCCcccccceecccCCCeeEEEEEcCCC-cEEEEEcCceeeeeeeecccccccc
Q 004298 133 SRFFPPAPRIPQMPGLVSGDTGFT--DDSEDSFRELANSSHQRFSILCSGDKDG-SICFNIFGIFPIGKINIHKFHVAIP 209 (763)
Q Consensus 133 i~~wd~~~~~~~l~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~L~sgs~DG-~I~lw~~~~~~ig~~~i~~~~~~~~ 209 (763)
+.-++........ .+...++ +......+-+ +.+.++++-+++-.+| .|..|.-+...++.+.+..
T Consensus 187 i~r~~~d~~~g~~----~~~~~~~~~~~~~G~PDG~--~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~------ 254 (307)
T COG3386 187 IHRYDLDPATGPI----GGRRGFVDFDEEPGLPDGM--AVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPV------ 254 (307)
T ss_pred EEEEecCcccCcc----CCcceEEEccCCCCCCCce--EEeCCCCEEEecccCCceEEEECCCCcEEEEEECCC------
Confidence 5555443210000 0000011 0000001111 2234555665444444 7888876666666665432
Q ss_pred cCCCCCceeeeccceeeEEe-cCCCCEEEEEeec
Q 004298 210 NADEQGTCRLLNASIYKVAL-SKDLFHLTVLCSG 242 (763)
Q Consensus 210 s~~~~~~~~l~~~~I~~v~~-SpDg~~Llv~~~d 242 (763)
..+++++| .++++.|++.+..
T Consensus 255 ------------~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 255 ------------KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ------------CCCccceEeCCCcCEEEEEecC
Confidence 12345566 4677888887654
No 367
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.23 E-value=0.12 Score=58.23 Aligned_cols=107 Identities=18% Similarity=0.245 Sum_probs=72.8
Q ss_pred CeEEEEEcCC-CCEEEEEe----CCCeEEEEEccCc-----eEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 23 QIKIAEWNPE-KDLLAMAT----EDSKILLHRFNWQ-----RLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~sP~-~~lLA~~s----~Dg~V~v~~l~~~-----~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
.+++++|++- .+.||.|- .|..+.||+++.. .-|.+. ......+++|-.|.+.+.+|.....+.++|+
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence 4899999994 57777763 4567889998432 223332 2345678999999999999999999999998
Q ss_pred cC-CeEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCC
Q 004298 91 EN-GKLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 91 e~-g~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+- ......+ .+..+..+...| .+.++++- .|+.+.+||.
T Consensus 184 Rqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~-------~dg~iAiwD~ 224 (783)
T KOG1008|consen 184 RQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN-------SDGDIAIWDT 224 (783)
T ss_pred hhhhhhhhhh--hhhhcccceecCCCCCceecc-------ccCceeeccc
Confidence 72 1111112 233455666667 45566554 4889999994
No 368
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.88 E-value=3.9 Score=42.54 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCEEEEEe--CC-CeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE-ccCCeEEE-
Q 004298 23 QIKIAEWNPEKDLLAMAT--ED-SKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD-VENGKLLR- 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~D-g~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd-ve~g~~~~- 97 (763)
.+...+++|+++.+|... .+ ..+++++..+.. .....+..++.-.|+++|...++...++..+++. ..+++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 588899999999888776 33 456666654332 2222566889999999999888888777777774 33343321
Q ss_pred Eeccc--CCceeEEEeecCCCceec
Q 004298 98 SLKSH--TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 98 ~l~~h--~~~V~~l~ws~~~~~l~s 120 (763)
.+... ...|+.+.++|||..++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAV 128 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEE
Confidence 12211 128999999999987654
No 369
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.43 E-value=1.8 Score=47.87 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=77.8
Q ss_pred ccCCCEEE-EEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCC
Q 004298 70 RPDGKAIA-VGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 70 spDG~~La-sg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~ 147 (763)
..|..+|. .|+.-..++-+|++-|+++.....|... -+.+.|+..+- .+......+..+..+.-.|++-...++..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 34555544 4556677888999999999999887655 56777765321 11111111112444433444321111110
Q ss_pred c----ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccc
Q 004298 148 L----VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNAS 223 (763)
Q Consensus 148 ~----~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~ 223 (763)
. ..+...| +........++++|+..|-|++|+ .+|.-.-+. .+. ....
T Consensus 554 ~esKdY~tKn~F-----------ss~~tTesGyIa~as~kGDirLyD----Rig~rAKta----lP~---------lG~a 605 (776)
T COG5167 554 VESKDYKTKNKF-----------SSGMTTESGYIAAASRKGDIRLYD----RIGKRAKTA----LPG---------LGDA 605 (776)
T ss_pred eeehhccccccc-----------cccccccCceEEEecCCCceeeeh----hhcchhhhc----Ccc---------cccc
Confidence 0 0011111 111122335899999999999996 222211111 111 1134
Q ss_pred eeeEEecCCCCEEEEEeecCc
Q 004298 224 IYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 224 I~~v~~SpDg~~Llv~~~d~l 244 (763)
|..+..+.+|+++++.|..-+
T Consensus 606 Ik~idvta~Gk~ilaTCk~yl 626 (776)
T COG5167 606 IKHIDVTANGKHILATCKNYL 626 (776)
T ss_pred eeeeEeecCCcEEEEeecceE
Confidence 667888999999999997543
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.98 E-value=4.6 Score=45.18 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCEEEEEe-CCC----eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCC-----------cEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDS----KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG-----------TIT 86 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg----~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg-----------~V~ 86 (763)
+..+++||+++++|.+- ..| .|+++++ +|+.+-..-.+.....+.|.+||+.|.....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 34688999999999753 333 5889999 554444332222233499999999877665333 378
Q ss_pred EEEccCCeE--EEEecccCCc--eeEEEeecCCCceec
Q 004298 87 LHDVENGKL--LRSLKSHTVA--VVCLNWEEDAQPSKN 120 (763)
Q Consensus 87 lwdve~g~~--~~~l~~h~~~--V~~l~ws~~~~~l~s 120 (763)
.|.+.++.. .-.+...... ...+.++++++++..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i 243 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI 243 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE
Confidence 888776532 2333332222 567888999987653
No 371
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.81 E-value=4 Score=45.40 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=60.9
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~l~ 110 (763)
++.+.+++.+|.+..++. +|+.+|+...+.. ..+ ..++..+.+++.+|.+..+|.++|+.+.+...-. ....+..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~ 332 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV 332 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE
Confidence 456666778899999998 8899998764332 111 2256678888899999999999998765443211 1111111
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. ++ .+..++ .++.+..+|..+
T Consensus 333 v~-~g-~l~v~~------~~G~l~~ld~~t 354 (394)
T PRK11138 333 LY-NG-YLVVGD------SEGYLHWINRED 354 (394)
T ss_pred EE-CC-EEEEEe------CCCEEEEEECCC
Confidence 11 23 333444 577777777654
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.76 E-value=3.6 Score=46.70 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=63.8
Q ss_pred eEEEEEcCCC----CEEEEEeCCCeEEEEEcc----CceEEEec----CCC--c--EEEEEEccCCCEEEEEEcCCcEEE
Q 004298 24 IKIAEWNPEK----DLLAMATEDSKILLHRFN----WQRLWTIS----PGK--S--VTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 24 V~~l~~sP~~----~lLA~~s~Dg~V~v~~l~----~~~v~~~~----~~~--~--V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
|..+.|.|-+ .-+........|.||.+. .+.-|-.. .++ + -.+..|+|....|++-.....-.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 8899999953 233445567789999982 12222221 111 1 245679999989888776655556
Q ss_pred EEcc--CCeEEEEecccCCceeEEEeecCCCceecc
Q 004298 88 HDVE--NGKLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 88 wdve--~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
++++ +.+....+++ .+-|.|.+|.+||+.++.+
T Consensus 139 ~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred eeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEE
Confidence 7765 3445455654 6889999999999877654
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.03 E-value=3.6 Score=46.73 Aligned_cols=76 Identities=20% Similarity=0.403 Sum_probs=53.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceE-EEecCCCcEEEEEEccCCCEEEEEEcCC-cEEEEEcc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRL-WTISPGKSVTSLCWRPDGKAIAVGLEDG-TITLHDVE 91 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v-~~~~~~~~V~~l~wspDG~~Lasg~~Dg-~V~lwdve 91 (763)
...++|-=-..+.|+|....|++-+....=.+++. +..++ .+++..+.|.|-||.+||+.|+++-... .-+|||-.
T Consensus 107 i~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 107 IREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 33454433456889999999988766554445555 44444 5677888999999999999988876442 34788843
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.18 E-value=9.3 Score=39.72 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCce-EEEec--CC-CcEEEEEEccCCCEEEEEE---cCCcEEEEEcc--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF--NWQR-LWTIS--PG-KSVTSLCWRPDGKAIAVGL---EDGTITLHDVE-- 91 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~-v~~~~--~~-~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve-- 91 (763)
.+....|+|++.+.+....+....+++. +++. ...+. .. ..|+++++||||..+|.-. .++.|.+-.+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 4677899999888877776777776652 3321 11222 12 2899999999999888776 45778877764
Q ss_pred -CC--e----EEEEecccCCceeEEEeecCCCceeccC
Q 004298 92 -NG--K----LLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 -~g--~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+| . ...........++.+.|.+++.+++.+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 33 1 1112222346899999999998776654
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.64 E-value=16 Score=39.29 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=69.7
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEe---cCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTI---SPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~---~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+.++..+++.|.+++-. ++. ++++. .+.|.+|++.... +... ...-.+.++... +.+|++|.....|.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 33444555669888866 334 44443 5889999995444 3322 233456666655 55999999989998885
Q ss_pred ccC-CeEEEEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 90 VEN-GKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 90 ve~-g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
... +..+..+. .....++++.+-+++..++.+. .+|.+.++...+
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEECC
Confidence 543 33333332 2245688888886666666655 678888876543
No 376
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.48 E-value=4.9 Score=44.66 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
++.+..++.+|.+..++. +|+.+|.... +....+... .+..+.++..||.+...|..+|+.+.+.+..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 456666778899988888 7888897652 122222222 2457788999999999999999998877543
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.42 E-value=9.6 Score=42.70 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=44.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc-CCceeEEEeecCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH-TVAVVCLNWEEDA 115 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h-~~~V~~l~ws~~~ 115 (763)
.+++..++.||+|+++|.-..+|.+.+.+..-.+.+..+... ......|.|+.+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 357999999999999999999999999987766666665543 3577899998654
No 378
>PRK10115 protease 2; Provisional
Probab=84.06 E-value=11 Score=45.13 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC------CcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATEDS-----KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED------GTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D------g~V~lwdve 91 (763)
+..+.|||++++||.+.+.+ .|++.++ +|..+.....+.. ..++|++||+.|+....+ ..|+.|++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 77789999999999765432 5777777 3432222222222 569999999977776542 367888888
Q ss_pred CC--eEEEEecccCCceeEEEeec-CCCcee
Q 004298 92 NG--KLLRSLKSHTVAVVCLNWEE-DAQPSK 119 (763)
Q Consensus 92 ~g--~~~~~l~~h~~~V~~l~ws~-~~~~l~ 119 (763)
++ +....+........--.|.+ +++++.
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~ 238 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVV 238 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEE
Confidence 77 33333433233333233433 666543
No 379
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.52 E-value=4 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=25.8
Q ss_pred cEEEEEEcc-CC--CEEEEEEcCCcEEEEEccCC
Q 004298 63 SVTSLCWRP-DG--KAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 63 ~V~~l~wsp-DG--~~Lasg~~Dg~V~lwdve~g 93 (763)
.|.++.|+| .+ .+|+.+-.-|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999998 44 58899989999999999854
No 380
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=82.81 E-value=19 Score=37.29 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC----ceEEEec---------CCCcEEEEEEcc-CCCEEEEEEcCCcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW----QRLWTIS---------PGKSVTSLCWRP-DGKAIAVGLEDGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~----~~v~~~~---------~~~~V~~l~wsp-DG~~Lasg~~Dg~V~l 87 (763)
.++-.++|+|.++.|.++-...-..+|.+++ ..+.... .-..+.++.++| .|++++.+..+..+..
T Consensus 118 ~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~ 197 (248)
T PF06977_consen 118 KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLE 197 (248)
T ss_dssp S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEE
Confidence 4589999999988888887777677777754 1111111 223578999999 5677788888999999
Q ss_pred EEccCCeEEEEecccC---------CceeEEEeecCCCceecc
Q 004298 88 HDVENGKLLRSLKSHT---------VAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 88 wdve~g~~~~~l~~h~---------~~V~~l~ws~~~~~l~s~ 121 (763)
+| .+|+.+..+.-.. ...-.|++.++|...+++
T Consensus 198 ~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 198 LD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp E--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99 6688876654322 256789999999876665
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.52 E-value=35 Score=36.47 Aligned_cols=101 Identities=10% Similarity=0.086 Sum_probs=50.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++|+....+....++ ...+++..|. ||+. ++.+-|... ....+..+.-++||++++++..-....-||--..
T Consensus 100 ~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~ 176 (302)
T PF14870_consen 100 SKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT 176 (302)
T ss_dssp TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S
T ss_pred CCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc
Confidence 3445444444443333 3333444554 4555 555566543 3456888989999999999976666667774322
Q ss_pred eEEEEecccCCceeEEEeecCCCceecc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
.-...-+.-...|..|.|.|++.....+
T Consensus 177 ~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 177 TWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp S-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred cceEEccCccceehhceecCCCCEEEEe
Confidence 1222222335799999999998765544
No 382
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.09 E-value=1.5 Score=51.63 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=68.9
Q ss_pred cCCCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEccC--ceEEEecCCCcEEE-----------EEEccCCCEEEEE
Q 004298 16 FDKPVASQIKIAEWNP---EKDLLAMATEDSKILLHRFNW--QRLWTISPGKSVTS-----------LCWRPDGKAIAVG 79 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP---~~~lLA~~s~Dg~V~v~~l~~--~~v~~~~~~~~V~~-----------l~wspDG~~Lasg 79 (763)
-..|....+.-+.||| +.-++-.+-.+++|.+...+. +.++.- |+..++. -..||||+.+|.+
T Consensus 175 ~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 175 PITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRS-HSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred ecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHh-cCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 3445556678888998 334444455667776655532 212111 4332211 1279999999999
Q ss_pred EcCCcEEEEEcc-CCe----EEEEecccC-CceeEEEeecCCC---------ceeccCCCCCcccCCceeecCCCC
Q 004298 80 LEDGTITLHDVE-NGK----LLRSLKSHT-VAVVCLNWEEDAQ---------PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 80 ~~Dg~V~lwdve-~g~----~~~~l~~h~-~~V~~l~ws~~~~---------~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+.||.|+.|.+. +|+ +++..+.|+ .+-.|..+..+.. +.+++. -.++.+++|...+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt-----d~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT-----DVNREEKFWAEAP 324 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc-----cCCcceeEeeccc
Confidence 999999988865 343 556667776 3333433333221 223333 1467788886554
No 383
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=35 Score=38.51 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=56.4
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---------------------EEEecCCCcEEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---------------------LWTISPGKSVTSLCWRPDG 73 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---------------------v~~~~~~~~V~~l~wspDG 73 (763)
-..++.-.|..+..||.|..+|.++.+|.+.++=. .|.+ +++-++.-.+...+|+|+.
T Consensus 98 P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 98 PINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred cCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCc
Confidence 34455566889999999999999999997655442 2221 1111122246778999976
Q ss_pred ---CEEEEEEcCCcEEEEEccCCeEE
Q 004298 74 ---KAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 74 ---~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..|.+-.+|+.+|+||...-..+
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCcchh
Confidence 68888899999999998654333
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.21 E-value=23 Score=37.79 Aligned_cols=99 Identities=14% Similarity=0.246 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEE-ccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHD-VENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd-ve~g~~~~ 97 (763)
+.+..+.-+++|.++|++. .|.+.+-.-+|+..|... ...+|.++.|+||+...+++ ..|.|+.=+ ..+++...
T Consensus 145 gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEEC-cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 4588888899999888764 565543333455555443 45789999999998877755 788887766 22233222
Q ss_pred E----ecccCCceeEEEeecCCCceeccC
Q 004298 98 S----LKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 98 ~----l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
. +....-.+..++|.+++...++|+
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 2 112223578999999888777765
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.98 E-value=94 Score=34.24 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=50.2
Q ss_pred CeEEEEEcCCC-CEEEEEeC------CCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEE-----cCCcEEE
Q 004298 23 QIKIAEWNPEK-DLLAMATE------DSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGL-----EDGTITL 87 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~------Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~-----~Dg~V~l 87 (763)
.+..+.|||.. .+|+-|-+ |..|++-+.+|..++.+. .+..+..=-|.|||+.|.--+ .+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 46678899966 45555542 335666666777777775 345677788999999776532 2335666
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceec
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s 120 (763)
+|.++++....... ..-....-+++|++++.
T Consensus 269 ~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 269 YDPDTGERRRLMEM--PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp E-TTT--EEEEEEE---SEEEEEE-TTSSEEEE
T ss_pred eCCCCCCceEEEeC--CceeeeEEcCCCCEEEe
Confidence 77888765432221 12334444677776654
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.37 E-value=10 Score=39.33 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=63.6
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEEc--cCceEEEec-CCCcEEEEEEccCCCEEEEEEc------C-----------
Q 004298 28 EWNPEKDLLAMATE-----DSKILLHRF--NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE------D----------- 82 (763)
Q Consensus 28 ~~sP~~~lLA~~s~-----Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~------D----------- 82 (763)
.|||+|.+|-..-+ -|.|-|||. ..+++-.+. +|-....+.|.+||+.++++.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 58999988765433 367889998 456676665 6666788999999999988753 1
Q ss_pred -CcEEEEEccCCeEEEEe--c--ccCCceeEEEeecCCCceecc
Q 004298 83 -GTITLHDVENGKLLRSL--K--SHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 83 -g~V~lwdve~g~~~~~l--~--~h~~~V~~l~ws~~~~~l~s~ 121 (763)
-++.+.|..+|+++.+. . .+.-.|.++...+||+....+
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 13455666667665443 2 344577888887777655443
No 387
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.29 E-value=7.1 Score=27.57 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=25.7
Q ss_pred cCCCEEEEEE-cCCcEEEEEccCCeEEEEecc
Q 004298 71 PDGKAIAVGL-EDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 71 pDG~~Lasg~-~Dg~V~lwdve~g~~~~~l~~ 101 (763)
|||+.|.++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6888777765 689999999999998888765
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.04 E-value=13 Score=38.56 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=72.9
Q ss_pred cCCCCCCCeEEEEEcCCCC-EEEEEeCCCe-EEEEEccCc-eEEEec-CCC--cEEEEEEccCCCEEEEEEcC-----Cc
Q 004298 16 FDKPVASQIKIAEWNPEKD-LLAMATEDSK-ILLHRFNWQ-RLWTIS-PGK--SVTSLCWRPDGKAIAVGLED-----GT 84 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~-lLA~~s~Dg~-V~v~~l~~~-~v~~~~-~~~--~V~~l~wspDG~~Lasg~~D-----g~ 84 (763)
+...+|.+...++++|... -+|.+-.-|+ ..+++.++. ....+. ..+ ---.-.|||||.+|...-.| |.
T Consensus 62 ~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 62 FATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred eeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCce
Confidence 3445667788899999764 4566666665 567777443 222222 111 12235799999999776543 77
Q ss_pred EEEEEccCC-eEEEEecccCCceeEEEeecCCCceeccCC
Q 004298 85 ITLHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFG 123 (763)
Q Consensus 85 V~lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~ 123 (763)
|-|||...+ ..+..+..|.-.-..+.|.+||+.++...+
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 999998754 345567788878889999999998877643
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.40 E-value=14 Score=43.19 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCEEEEEeCC-CeEEEEEccCceE-EE--ecCCCcEEEEEEc--cCCCEEEEEEcCCcEEEEEcc-----C
Q 004298 24 IKIAEWNPEKDLLAMATED-SKILLHRFNWQRL-WT--ISPGKSVTSLCWR--PDGKAIAVGLEDGTITLHDVE-----N 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D-g~V~v~~l~~~~v-~~--~~~~~~V~~l~ws--pDG~~Lasg~~Dg~V~lwdve-----~ 92 (763)
...+.-|. .+.+|+...+ .++.||+..+..+ +. +...+.|.++.|. |||+.+.+-|-.+.|.++.-- +
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34455555 4556666555 4689999955442 22 2347889999996 599988888888888888521 1
Q ss_pred ----CeEEEEe--cccC-CceeEEEeecCCCceeccCC
Q 004298 93 ----GKLLRSL--KSHT-VAVVCLNWEEDAQPSKNDFG 123 (763)
Q Consensus 93 ----g~~~~~l--~~h~-~~V~~l~ws~~~~~l~s~s~ 123 (763)
-..++++ ..|+ .+|.+..|.++|.+++.++.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 1233332 3344 58999999999988876653
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.01 E-value=66 Score=33.88 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=53.1
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc-CCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH-TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h-~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.+.++.|+|+.+.|.+....+.-.++=..+|+.++++.-. -.....|.|..+|++.++.- .++.+.++..
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE------R~~~l~~~~v 157 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE------RDRALYLFTV 157 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh------hcceEEEEEE
Confidence 4899999999998888887777777766779999997642 23456788888888888765 6666666543
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.95 E-value=28 Score=41.87 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=47.1
Q ss_pred CcEEEEEEccCCCEEEEEEcCCcEEEEEcc----------CCeE---EEEec--------ccCCceeEEEeecCC---Cc
Q 004298 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVE----------NGKL---LRSLK--------SHTVAVVCLNWEEDA---QP 117 (763)
Q Consensus 62 ~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----------~g~~---~~~l~--------~h~~~V~~l~ws~~~---~~ 117 (763)
-.|..|..+|+|+++|..|..|.+ |..+. .|+. .+++. .+...|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 358999999999999999986644 43332 1221 11111 224578899999864 44
Q ss_pred eeccCCCCCcccCCceeecCCC
Q 004298 118 SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 118 l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
++.-. .|+++|+||..
T Consensus 164 l~vLt------sdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLT------SDNTLRLYDIS 179 (717)
T ss_pred EEEEe------cCCEEEEEecC
Confidence 44433 59999999985
No 392
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.87 E-value=40 Score=31.21 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=56.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCc---------eEEEecCCCcEEEEE---Ecc-CC-CEEEEEEcCCcEEEEEcc
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRFNWQ---------RLWTISPGKSVTSLC---WRP-DG-KAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---------~v~~~~~~~~V~~l~---wsp-DG-~~Lasg~~Dg~V~lwdve 91 (763)
.-.|.....-|+.++.-|+|.||+...+ .+..++-++.|++|+ |.| ++ ..|++|+ ...+..||++
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3456666677889999999999987321 344555667788875 443 23 3566555 5668899998
Q ss_pred CCeEEEEecccCCceeEEEeec
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~ 113 (763)
+..-+..-. -...|.++.+..
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~ 102 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGK 102 (136)
T ss_pred cCchhhhhh-CccceeEEEEEe
Confidence 765543222 246788887753
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.43 E-value=15 Score=37.17 Aligned_cols=89 Identities=11% Similarity=0.221 Sum_probs=64.2
Q ss_pred EEEEEcCCCCEE-EEEeCCCeEEEEEc---cC-----ceEEEecCC-----CcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 25 KIAEWNPEKDLL-AMATEDSKILLHRF---NW-----QRLWTISPG-----KSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 25 ~~l~~sP~~~lL-A~~s~Dg~V~v~~l---~~-----~~v~~~~~~-----~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
..++|+-+.+.+ .+-+.+-+|.-|+. +| ..++.+... ...-.++..-+|++.++....|+|.-.|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 357888766544 45666778877773 22 245555421 11234555678999999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeec
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~ 113 (763)
.+|+.+..++--...|+|++|.-
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99999999887788999999964
No 394
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=78.34 E-value=1 Score=50.99 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=46.2
Q ss_pred eeeecCCceeeeccCCcccceeeecCcceEEeecCcceEEEEeeccCcccc
Q 004298 709 FYLQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYILEEDEDEV 759 (763)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~la~~~~r~~~cv~~~~~~~~~~~~~~d~~~~ 759 (763)
.+.++. ++.+..|+..+.|++++++++++||++....+.+|.+|++++|+
T Consensus 12 ~~~~~~-~~~~~~p~s~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~ 61 (579)
T KOG1116|consen 12 STRDEE-DSLQVKPKSTIHPVDISAPAEKVDVLGKLLYAGKYVLEPRESED 61 (579)
T ss_pred CCcccc-ccCccCCccceeeecccCCCCccchhheeeccceEecccccccc
Confidence 455777 89999999999999999999999999999999999999999885
No 395
>PRK13684 Ycf48-like protein; Provisional
Probab=77.26 E-value=48 Score=35.97 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
...+..+.++|++.+++++ ..|.+..-.-++.+-|... ....++++.+.|+|+.+++| ..|.+++=+...|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4568899999988766544 4565532212444555443 34578999999999987776 45766533345555443
Q ss_pred Eeccc----CCceeEEEeecCCCceeccC
Q 004298 98 SLKSH----TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 98 ~l~~h----~~~V~~l~ws~~~~~l~s~s 122 (763)
..... ...+..+.+.+++..++.+.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcC
Confidence 32221 23578889998888777664
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.49 E-value=9 Score=38.90 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=40.5
Q ss_pred EccCCCEEEEEEcCCcEEEEEccCCeEEEEe-------c-------ccCCceeEEEeecCCCceeccC
Q 004298 69 WRPDGKAIAVGLEDGTITLHDVENGKLLRSL-------K-------SHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 69 wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l-------~-------~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+..+|+++++-..+|.+++||+.+++++..- . .....|..+..+.+|..+++-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 4568899999999999999999998876432 1 2345677778887787666654
No 397
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=76.46 E-value=37 Score=37.56 Aligned_cols=97 Identities=11% Similarity=0.173 Sum_probs=72.3
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEEccCceEEE------ecCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCe
Q 004298 25 KIAEWNPEKDLLAMAT-EDSKILLHRFNWQRLWT------ISPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGK 94 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~~v~~------~~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~ 94 (763)
..++++|++..+..+. .++.|.+.+.++..++. +..+.....+.++|||+++.+.... +.+...|..++.
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 6799999998666554 77899999998888885 3344556789999999977776544 599999999888
Q ss_pred EEEE-ecccCCceeEEEeecCCCceecc
Q 004298 95 LLRS-LKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 95 ~~~~-l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
.... ..........+...|+|..+...
T Consensus 243 v~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 243 VTATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred EEEeccccccCCCCceeECCCCCEEEEE
Confidence 7765 22211145667888998877655
No 398
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.11 E-value=83 Score=35.03 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe----EEEEecccCCceeEEEeecCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK----LLRSLKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~ 115 (763)
..++|.+|.||||.+.||+--.+.+|.+++....+ ..++.+..+..|....|+.+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~ 124 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST 124 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe
Confidence 44689999999999999999999999999873211 123333445568999998764
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=75.99 E-value=2e+02 Score=35.29 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=72.5
Q ss_pred eEEEEEcCC-CCEEEEEe----------CCCeEEEEEccC-ceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 24 IKIAEWNPE-KDLLAMAT----------EDSKILLHRFNW-QRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 24 V~~l~~sP~-~~lLA~~s----------~Dg~V~v~~l~~-~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
|.++.|..| +.++++|+ ..|.|.||+... +++-.+. -.+.|.++.- -+|+++| +-+..|+||
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEE
Confidence 555668777 67788776 357888888843 4444332 2234444431 2677776 446789999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
+..+++.++.-..|..++..+...-.+..++.|. --+++.+..
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD------lm~Sitll~ 896 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGD------LMRSITLLQ 896 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEee------ccceEEEEE
Confidence 9999888887777888999999998898888875 455555543
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.99 E-value=9.7 Score=46.23 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=51.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE-Eec----CCCcEEEEEEccCCCEEEEEEcCCcE
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLW-TIS----PGKSVTSLCWRPDGKAIAVGLEDGTI 85 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~-~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V 85 (763)
.....++|++++|+.+|.+++.|-.+|.|.+|+....++. .+. ++..|--+.|..++..+.++...|.+
T Consensus 126 ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 126 NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 3455678999999999999999999999999999544433 332 33445556677777778888777763
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.16 E-value=1.6 Score=51.52 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=57.2
Q ss_pred CCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc---cCceE----EEec--CCCcEEEEEEcc---CCCEEEEEEcCC
Q 004298 17 DKPVASQIKIAEWNP-EKDLLAMATEDSKILLHRF---NWQRL----WTIS--PGKSVTSLCWRP---DGKAIAVGLEDG 83 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l---~~~~v----~~~~--~~~~V~~l~wsp---DG~~Lasg~~Dg 83 (763)
-|.+|+.|-.+.|-. +...++ -.-|.+.||++ +|+.. .++. .|..+.-+.|.| +.-++..+-.+|
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 356778888888832 233333 33477889997 45422 2221 345567777877 556788888899
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEee
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws 112 (763)
.|++..+.+... .-+++|...++.+++-
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFF 233 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHH
Confidence 998877654322 3355676666665544
No 402
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=72.85 E-value=24 Score=37.84 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=59.6
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEEccC-------ceEEEec--CCCcEEEEEEccCCCEEEEEEcCC-cEEEEEccCC
Q 004298 25 KIAEWNPEKDLLAMAT-EDSKILLHRFNW-------QRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDG-TITLHDVENG 93 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~-------~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg-~V~lwdve~g 93 (763)
..++|||+++.+..+. ..+.|.-|.+.. .+.+... ..+..-.++...+|.+-+++..+| .|..|+.+ |
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 4699999997665554 446676666531 1111111 223445677778888876666655 89999987 9
Q ss_pred eEEEEecccCCceeEEEeec
Q 004298 94 KLLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~ 113 (763)
+.+..+......+++++|--
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred cEEEEEECCCCCCccceEeC
Confidence 99999887667889999864
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.94 E-value=38 Score=34.33 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEe---------------cCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTI---------------SPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~---------------~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
+..+. ..++++.+.+.+|.+++|++..++. ..- .....|..+..+.+|.-|++ -.+|..+.
T Consensus 15 ~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~ 91 (219)
T PF07569_consen 15 VSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYS 91 (219)
T ss_pred eEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEE
Confidence 44444 5688899999999999999954433 222 12346777888878876554 44577788
Q ss_pred EEccCC
Q 004298 88 HDVENG 93 (763)
Q Consensus 88 wdve~g 93 (763)
|+..-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 876533
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.87 E-value=25 Score=41.67 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=74.3
Q ss_pred CCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcc--------C----c---------eEEEecCCCcEEEEEEc--cCCC
Q 004298 20 VASQIKIAEWNP--EKDLLAMATEDSKILLHRFN--------W----Q---------RLWTISPGKSVTSLCWR--PDGK 74 (763)
Q Consensus 20 ~~~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~--------~----~---------~v~~~~~~~~V~~l~ws--pDG~ 74 (763)
.|..|..+...- ..+.|+.+.+||.|.+|+.. . . +-+.+.-+..+++++++ ...+
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce
Confidence 455577777665 34788899999999999861 1 0 11223345678999999 7888
Q ss_pred EEEEEEcCCcEEEEEccC--CeEEEE-ecccCCceeEEEeecCC---C---ceeccCCCCCcccCCceeecCC
Q 004298 75 AIAVGLEDGTITLHDVEN--GKLLRS-LKSHTVAVVCLNWEEDA---Q---PSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdve~--g~~~~~-l~~h~~~V~~l~ws~~~---~---~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+||+++....|.||-... .+..+. -..|...|.+|+|.++. . .+++++ -.|.+-+|+.
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d------I~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD------ISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe------ccCcEEEEEE
Confidence 999999999998886543 222111 11255689999998754 1 344444 4666666554
No 405
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.44 E-value=1.7e+02 Score=32.54 Aligned_cols=96 Identities=13% Similarity=0.256 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe-----E
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK-----L 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~-----~ 95 (763)
...+.-++++.+++.+. .|.+..=.-+|+..|... ....++++.|.+||..++++ .+|.+ ++....|+ .
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccc
Confidence 34456678877766554 554433333555555532 45678999999999988766 45554 34545554 2
Q ss_pred EEEeccc--CCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSH--TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h--~~~V~~l~ws~~~~~l~s~s 122 (763)
....... ...+..+.+.+++..+++|.
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence 2333221 23588999999988888874
No 406
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.18 E-value=22 Score=41.43 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=48.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcc----CceEEEec---C---------------------CCcEEEEEEcc----CCCEEEE
Q 004298 31 PEKDLLAMATEDSKILLHRFN----WQRLWTIS---P---------------------GKSVTSLCWRP----DGKAIAV 78 (763)
Q Consensus 31 P~~~lLA~~s~Dg~V~v~~l~----~~~v~~~~---~---------------------~~~V~~l~wsp----DG~~Las 78 (763)
++...++++..||.+...... ....|.-. . ...+.+++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467888999999988777663 23334321 0 12356677777 6789999
Q ss_pred EEcCCcEEEEEccCCeEEEEeccc
Q 004298 79 GLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 79 g~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
-+.|+++|+||+.+++++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999998877543
No 407
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.75 E-value=13 Score=25.92 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=17.6
Q ss_pred CcEEEEEEccCCCEEEEEE-cC--CcEEEE
Q 004298 62 KSVTSLCWRPDGKAIAVGL-ED--GTITLH 88 (763)
Q Consensus 62 ~~V~~l~wspDG~~Lasg~-~D--g~V~lw 88 (763)
..-.+..|+|||+.|+..+ .+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999998887766 33 555554
No 408
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=69.64 E-value=70 Score=37.95 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ 53 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~ 53 (763)
-..+.++|-+.+||.|.+.+++.+.+..|.+++-...
T Consensus 108 vG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd 144 (1243)
T COG5290 108 VGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFD 144 (1243)
T ss_pred hccccCceEEEeeccCCceEEEEEcCceEEEEecccc
Confidence 3455678999999999998888888999988876443
No 409
>PHA02713 hypothetical protein; Provisional
Probab=69.33 E-value=35 Score=39.90 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=26.8
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcC
Q 004298 32 EKDLLAMATEDS-----KILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 32 ~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~D 82 (763)
++.+.+.|+.++ ++..|+...+ -|... ....-.++ -.-+|+..++|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~-~~~~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGM-CVLDQYIYIIGGRT 408 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccE-EEECCEEEEEeCCC
Confidence 567777777654 3677777432 34432 11111111 12378888888865
No 410
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.34 E-value=1.2 Score=49.11 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=77.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEE-EeCCCeEEEEEccCceEEEecCCCc--EEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAM-ATEDSKILLHRFNWQRLWTISPGKS--VTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~-~s~Dg~V~v~~l~~~~v~~~~~~~~--V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.+...|+....++|.-+++.+|+ +-..+.+.+|+++.+.--.+..++. -.-+.|++-+..++.|-..|.+.|++..+
T Consensus 69 le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 69 LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccc
Confidence 34455677788999999987775 4556789999986554444432221 11278999999999999999999999877
Q ss_pred CeEEEEecccCCceeEEEeecCCCceecc
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
.+.+-..-.|...+++++|.+.+..+..+
T Consensus 149 sR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 149 SRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred hhhhhhhcccccceeEEEecccceeeecC
Confidence 66555554488899999999987655443
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=67.43 E-value=1.7e+02 Score=35.79 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=63.7
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe-cccCCceeEEEeecCC------CceeccCCCCCcccCCceee
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL-KSHTVAVVCLNWEEDA------QPSKNDFGNIPTYEDRTSRF 135 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l-~~h~~~V~~l~ws~~~------~~l~s~s~~~~~~~d~~i~~ 135 (763)
.++...-+.+...+++++.++.+...+++.+...... +.-...|.|+.++|-+ ++++.|. ++..+.+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~------Ws~~~~~ 562 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGL------WSDISMI 562 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEe------ecceEEE
Confidence 3444444556667888888888888888776632221 1224689999999753 2456665 4544444
Q ss_pred cCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 136 FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 136 wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
.-..|.........-+.... ..++ +...+..+..+|.++..||.+..+.++
T Consensus 563 l~~~pd~~~~~~~~l~~~~i----PRSI--l~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 563 LTFLPDLILITHEQLSGEII----PRSI--LLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EEECCCcceeeeeccCCCcc----chhe--eeEEeeccceEEEEEcCCceEEEEEEE
Confidence 33332111110000000000 0001 112233446899999999999988644
No 412
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=66.89 E-value=1.1e+02 Score=37.49 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=65.7
Q ss_pred eeEeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-Cc----eEEEec--CCC----------cEEEEEEccC
Q 004298 11 PFQLQFDKPVASQIKIAEWNP-EKDLLAMATEDSKILLHRFN-WQ----RLWTIS--PGK----------SVTSLCWRPD 72 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~~----~v~~~~--~~~----------~V~~l~wspD 72 (763)
+.++.+..--......++||| +...+|+....|...||++. +. ..|... ..+ .-..|.|.++
T Consensus 135 l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~ 214 (765)
T PF10214_consen 135 LLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD 214 (765)
T ss_pred eEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC
Confidence 334444433334577899999 45799999999999999992 11 223222 112 2347899998
Q ss_pred CCEEEEEEcCCcEEEEEccCCeEEEEe--cccCCceeEEEeecC
Q 004298 73 GKAIAVGLEDGTITLHDVENGKLLRSL--KSHTVAVVCLNWEED 114 (763)
Q Consensus 73 G~~Lasg~~Dg~V~lwdve~g~~~~~l--~~h~~~V~~l~ws~~ 114 (763)
-+.|+++.. ..+.++|++++.....+ ......|..+.=++.
T Consensus 215 ~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 215 SNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred CCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 887777654 55778999877653312 122356777777766
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=66.82 E-value=17 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=24.5
Q ss_pred CeEEEEEcCC-C--CEEEEEeCCCeEEEEEcc
Q 004298 23 QIKIAEWNPE-K--DLLAMATEDSKILLHRFN 51 (763)
Q Consensus 23 ~V~~l~~sP~-~--~lLA~~s~Dg~V~v~~l~ 51 (763)
.|.+++|||. + ++||.+-..|.|.|+|+.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 5899999984 4 799998888999999873
No 414
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=66.80 E-value=1.5e+02 Score=30.66 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=42.0
Q ss_pred cCCCEEEEEEcCCcEEEEEccC-CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 71 PDGKAIAVGLEDGTITLHDVEN-GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 71 pDG~~Lasg~~Dg~V~lwdve~-g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..|+.|++|.++| +.+++... .+...... ...|..+...++-..+..-+ |+.+.+++...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-------d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-------DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-------CCccEEEEchh
Confidence 4678999999998 89999833 33333222 34499999888777666654 68888887653
No 415
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=65.81 E-value=1.5e+02 Score=34.06 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=47.8
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEecCCCcE---EEEEEcc--CCCEEEEEE---------cCCcEEEEEccCCeEEEE
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTISPGKSV---TSLCWRP--DGKAIAVGL---------EDGTITLHDVENGKLLRS 98 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V---~~l~wsp--DG~~Lasg~---------~Dg~V~lwdve~g~~~~~ 98 (763)
+.+..++.++.|.-++. +|+.+|.......+ ..+.-+| .+..+++++ .+|.+.-+|.++|+.+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 67778888999999998 89999998754331 1122223 234555554 367899999999999887
Q ss_pred ecc
Q 004298 99 LKS 101 (763)
Q Consensus 99 l~~ 101 (763)
+..
T Consensus 191 ~~~ 193 (488)
T cd00216 191 FYT 193 (488)
T ss_pred eec
Confidence 654
No 416
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=65.40 E-value=14 Score=41.14 Aligned_cols=55 Identities=27% Similarity=0.558 Sum_probs=39.2
Q ss_pred EEEEEEccCCCEEEEEE-cCC----cEEEEEccCCeEEEE-ecccCCceeEEEeecCCCceec
Q 004298 64 VTSLCWRPDGKAIAVGL-EDG----TITLHDVENGKLLRS-LKSHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 64 V~~l~wspDG~~Lasg~-~Dg----~V~lwdve~g~~~~~-l~~h~~~V~~l~ws~~~~~l~s 120 (763)
+....++|||+++|.+- ..| .++++|+++|+.+.. +.. .....+.|.++++.+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEE
Confidence 34678999999999874 334 499999999987754 222 22234999999876543
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=64.05 E-value=46 Score=39.03 Aligned_cols=108 Identities=15% Similarity=0.037 Sum_probs=54.3
Q ss_pred CCCEEEEEeCC-C-----eEEEEEccCceEEEecCCCc--EEEEEE-ccCCCEEEEEEcCCc-----EEEEEccCCeEEE
Q 004298 32 EKDLLAMATED-S-----KILLHRFNWQRLWTISPGKS--VTSLCW-RPDGKAIAVGLEDGT-----ITLHDVENGKLLR 97 (763)
Q Consensus 32 ~~~lLA~~s~D-g-----~V~v~~l~~~~v~~~~~~~~--V~~l~w-spDG~~Lasg~~Dg~-----V~lwdve~g~~~~ 97 (763)
++.+.++|+.| | ++..|+..... |.--+.-. -...+. .-+|..-|+|+.||. |-.||.++.+.-.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 45788888888 3 46667664333 55432111 011111 228899999999975 5566665544322
Q ss_pred EecccCCceeEEEe-ecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 98 SLKSHTVAVVCLNW-EEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 98 ~l~~h~~~V~~l~w-s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.-.. .......+- .-+|...+.|+.+.....-+++..+|+.+.
T Consensus 411 va~m-~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 411 VAPM-LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred cCCC-CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 1111 112222222 234666666652222212345666776653
No 418
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=63.20 E-value=28 Score=40.35 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=41.3
Q ss_pred CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 43 SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 43 g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
|.|.-+++ +|+.+|....+.....-...-.|..++++..||.++.+|.+||+.+.+++..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 45677777 7778888764332111111225557777888999999999999999887653
No 419
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=61.86 E-value=42 Score=32.57 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=24.5
Q ss_pred cEEEEEEccCC------CEEEEEEcCCcEEEEEcc
Q 004298 63 SVTSLCWRPDG------KAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 63 ~V~~l~wspDG------~~Lasg~~Dg~V~lwdve 91 (763)
.|.+++|||-| -+||+-..+|.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999954 378999999999999865
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=60.38 E-value=48 Score=36.46 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=49.8
Q ss_pred EEcCCCCEEEEEe-CCCe--EEEEEccCceEEEecCC--CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 28 EWNPEKDLLAMAT-EDSK--ILLHRFNWQRLWTISPG--KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 28 ~~sP~~~lLA~~s-~Dg~--V~v~~l~~~~v~~~~~~--~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
+|.++|+.|+.++ .||. +.+.++..+.+-.+..+ .......++|+++.+.--.....|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 6788996665544 4554 55556677777777643 23335778899998877667778999999998765555555
Q ss_pred CCceeEEEeec
Q 004298 103 TVAVVCLNWEE 113 (763)
Q Consensus 103 ~~~V~~l~ws~ 113 (763)
...+-...|..
T Consensus 122 ~~~~g~gt~v~ 132 (386)
T PF14583_consen 122 DDWKGYGTWVA 132 (386)
T ss_dssp TTEEEEEEEEE
T ss_pred cccccccceee
Confidence 56666677754
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=59.54 E-value=1.1e+02 Score=33.07 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCce---EEEec-----CCCcEEEEEEccC---CCEEEEEEc-C--------C
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQR---LWTIS-----PGKSVTSLCWRPD---GKAIAVGLE-D--------G 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~---v~~~~-----~~~~V~~l~wspD---G~~Lasg~~-D--------g 83 (763)
.+.|+|.|+++++++ ...|.|++++.++.. +-.+. .......++++|+ ..+|.+.+. . .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 578999999988775 559999999965543 33332 1235789999995 233333332 1 1
Q ss_pred cEEEEEccCC-------e-EEEEecc---cCCceeEEEeecCCCceeccC
Q 004298 84 TITLHDVENG-------K-LLRSLKS---HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 84 ~V~lwdve~g-------~-~~~~l~~---h~~~V~~l~ws~~~~~l~s~s 122 (763)
.|.-|....+ + ++..+.. ....-..|.|.|+|.+.++.+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 3333443333 1 1122222 223556799999997665543
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=58.41 E-value=1.2e+02 Score=35.77 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=46.3
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec-ccCCceeEEEee--cCCCceeccCCCCCcccCCceeecC
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK-SHTVAVVCLNWE--EDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~-~h~~~V~~l~ws--~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
.++-+.-+.-++.-++-.....+.|||...+..-..-. ...+.|.++.|. |+++.+.+-+ ..+.+.++.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG------f~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG------FPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE------cCcEEEEEE
Confidence 34555556666666665566679999999887544322 346899999996 5677666555 566676653
No 423
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=58.12 E-value=1.8e+02 Score=30.44 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CC---CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PG---KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~---~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
=+.++ .+++.|..+.....+..++. +.+.+..+. .+ ..++-+.|- +|...|=-+....|...|.++|++.
T Consensus 132 GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 132 GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp --EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 44454 56777777777778888887 555544443 33 346667876 8999999999999999999999998
Q ss_pred EEecc------------c---CCceeEEEeecCCC-ceecc
Q 004298 97 RSLKS------------H---TVAVVCLNWEEDAQ-PSKND 121 (763)
Q Consensus 97 ~~l~~------------h---~~~V~~l~ws~~~~-~l~s~ 121 (763)
..+.. + .+-.+.|+|.|... ++++|
T Consensus 209 ~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 209 GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 87641 1 24578999988765 55555
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=51 Score=36.60 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=65.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEec--CC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccC-Ce
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTIS--PG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~~--~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~ 94 (763)
++|.++.||||.+.+|+--.+++|.+++..+ +...... .+ ..|.+.+|+.+ .-+|.-...| +-+|.+.. .+
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence 4599999999999999999999998888722 2222222 22 35899999977 5566555444 55555432 33
Q ss_pred EEEEecccCCceeEEEeecCCCce
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
.++..+.|...|.=-.|+++...+
T Consensus 145 slRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhcccCccEEEEccccceE
Confidence 455566777788888888877643
No 425
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=56.20 E-value=49 Score=40.31 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=60.1
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc---cCceEEEecC----CCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF---NWQRLWTISP----GKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~~~~v~~~~~----~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
..+++.+.-.+...+..+.++|+|...|.+.+|+. ++..+....+ ...+..+.|+|++..++++...|...+|
T Consensus 143 ~~~~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~w 222 (1023)
T KOG2006|consen 143 AWKPLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFW 222 (1023)
T ss_pred hhccccccceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEe
Confidence 45565556667777778899999999999999997 4544444432 2256779999999999999999999999
Q ss_pred EccCC
Q 004298 89 DVENG 93 (763)
Q Consensus 89 dve~g 93 (763)
....+
T Consensus 223 S~~g~ 227 (1023)
T KOG2006|consen 223 SNQGN 227 (1023)
T ss_pred ccccc
Confidence 86533
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=54.43 E-value=80 Score=35.31 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEecCCCcEEEEE-Ec---------------cC-CCEE-EEEEc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTISPGKSVTSLC-WR---------------PD-GKAI-AVGLE 81 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~~~~~V~~l~-ws---------------pD-G~~L-asg~~ 81 (763)
.+.++..+|++.+.|+...-|.|.++|+... ++|+--....+.=+. .. +. ..+| +-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 4889999999999888877799999999433 334322111110000 00 00 1122 23446
Q ss_pred CCcEEEEEccCCeEEEEec
Q 004298 82 DGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~ 100 (763)
-|.|-||++++|..+..+.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 8999999999888776654
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=54.35 E-value=2.4e+02 Score=28.38 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=51.8
Q ss_pred EEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc--CCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 45 ILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE--NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 45 V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve--~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.++.+.+|.+....+ +...++-++. +.|.++...+.|.+|+++ ..+.+.++.. -+.|..+.++..|.++++--
T Consensus 3 ~~~H~F~sQ~v~~~~~--EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 3 YNCHPFGSQNVVPCEQ--EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred EEecccCCceeecccc--CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 3456667888887765 2333433332 455555777889999987 4566777765 38899999999999998853
No 428
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.35 E-value=22 Score=25.04 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=22.7
Q ss_pred CceEEEecCCCcEE-EEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 52 WQRLWTISPGKSVT-SLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 52 ~~~v~~~~~~~~V~-~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
|+.+|+...+..+. ++.. ++..+.+++.||.+..+|.++
T Consensus 1 G~~~W~~~~~~~~~~~~~v--~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAV--AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EE--CTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEE--ECCEEEEEcCCCEEEEEeCCC
Confidence 45678777554442 2333 566889999999999998764
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=38 Score=41.71 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----CCCcEEEEEEccCCCEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----PGKSVTSLCWRPDGKAIAV 78 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----~~~~V~~l~wspDG~~Las 78 (763)
++...+++++|+|.|..+++|-..|++.=|....+....+. ....|.+|+|-..-.++++
T Consensus 196 p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 55566899999999999999999999988888777555554 2357999999876555554
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.67 E-value=1.3 Score=48.83 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=77.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEec-ccC
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLK-SHT 103 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~-~h~ 103 (763)
...|-|.+.-+|.++.+..|..||-.+|.+...++.+....++|.-+|..+++. -..+.+.+||+.+... .++. +.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~ 117 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGT 117 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCc
Confidence 468999887789999999999999999999999888888899999999877664 4789999999874322 1111 112
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..-.-+.|++-+...+.+. ..+.+.+++...
T Consensus 118 ~s~sll~wsKg~~el~ig~------~~gn~viynhgt 148 (615)
T KOG2247|consen 118 SSKSLLAWSKGTPELVIGN------NAGNIVIYNHGT 148 (615)
T ss_pred chHHHHhhccCCccccccc------cccceEEEeccc
Confidence 2223367888776666554 566677766543
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=51.40 E-value=2.6e+02 Score=31.14 Aligned_cols=103 Identities=14% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----eEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-----RLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
..+.+..+..+.|.+++.+++++ ..|.+..-+-.++ ...... .+..+.++.|.+|+..+++| .+|.+...
T Consensus 276 ~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s 353 (398)
T PLN00033 276 NRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS 353 (398)
T ss_pred cCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe
Confidence 34445668899999999887654 6677644333332 122222 22358999999988766655 56665544
Q ss_pred EccCCeEEEEec---ccCCceeEEEeecCCCceeccC
Q 004298 89 DVENGKLLRSLK---SHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 89 dve~g~~~~~l~---~h~~~V~~l~ws~~~~~l~s~s 122 (763)
...|+.-...+ .-....+.+.|.++++.+++|.
T Consensus 354 -~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 354 -TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred -CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 34565544433 2235678999988888888874
No 432
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=50.64 E-value=48 Score=34.45 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 31 PEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 31 P~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
..++.|+.|+++| |++++. +......+.+...|..+..-|+-+.+++-+ ||.++++++.+-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 3578999999999 888888 444444444555699999999777666554 499999998743
No 433
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=50.08 E-value=1.7e+02 Score=27.06 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhccccccccccccCCCHHHHHHHHHHHhHHHHHHHHHHHH
Q 004298 356 EAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRV 435 (763)
Q Consensus 356 erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (763)
|+-.+|+.++|+...+.|.+-.+-.|+..+-+|..--.+ +-.-+.+.|.+|++.++.-+.++. ..
T Consensus 1 ~~~~~rvq~av~~mv~~ld~~~lr~mQ~~~f~C~a~Ccd------------d~~~s~e~V~~Cve~C~~pl~~aq---~~ 65 (131)
T PF05811_consen 1 EQQQQRVQKAVEKMVDDLDRKYLRKMQKKMFKCAAKCCD------------DSSASMEQVQRCVERCQQPLQQAQ---NY 65 (131)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHhcChHHHHH---HH
Confidence 345678999999999999888887777777776654432 223467899999999997766654 88
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHcC
Q 004298 436 LSSVVQQFSNFFN-WLLKCIKLLMQ 459 (763)
Q Consensus 436 i~~~~~~f~~F~~-WL~~~i~~l~~ 459 (763)
|..|+..|..=+. .+....++..+
T Consensus 66 vq~El~~FQ~rlqrC~~~C~dk~~d 90 (131)
T PF05811_consen 66 VQNELEQFQNRLQRCVMHCQDKAKD 90 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987555 46666666654
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=50.07 E-value=2.7e+02 Score=33.99 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=46.8
Q ss_pred CeEEEEEc---CC----CCEEEEEeCCCeEEEEEccC----------------ceEEEec----CCCcEEEEEEcc-CCC
Q 004298 23 QIKIAEWN---PE----KDLLAMATEDSKILLHRFNW----------------QRLWTIS----PGKSVTSLCWRP-DGK 74 (763)
Q Consensus 23 ~V~~l~~s---P~----~~lLA~~s~Dg~V~v~~l~~----------------~~v~~~~----~~~~V~~l~wsp-DG~ 74 (763)
+|..++|+ .. .++|++= ....+.|++... ..+..+. .|.....++|+| +.+
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Confidence 39999998 32 2455544 455677777211 2334443 244678899999 677
Q ss_pred EEEEEEcCCcEEEEEc
Q 004298 75 AIAVGLEDGTITLHDV 90 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdv 90 (763)
.||+-...|...||++
T Consensus 160 q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDI 175 (765)
T ss_pred eEEEEeccCcEEEEEe
Confidence 9999999999999999
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=50.05 E-value=52 Score=33.07 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=42.4
Q ss_pred EEcCCC-CEEEEEeCCCeEEEEEcc---CceEEEecCCCcEEEEEEccCCCEEEEEEc
Q 004298 28 EWNPEK-DLLAMATEDSKILLHRFN---WQRLWTISPGKSVTSLCWRPDGKAIAVGLE 81 (763)
Q Consensus 28 ~~sP~~-~lLA~~s~Dg~V~v~~l~---~~~v~~~~~~~~V~~l~wspDG~~Lasg~~ 81 (763)
++++.| +.|.++...+.|.+|++. .+.+..+.+-+.|..+.++..|++|++--.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 455556 777666778889999985 345667777789999999999999998653
No 436
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=49.79 E-value=81 Score=34.64 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCEEEEEe-----------CCC-eEEEEEc-c--Cc--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcE
Q 004298 24 IKIAEWNPEKDLLAMAT-----------EDS-KILLHRF-N--WQ--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTI 85 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-----------~Dg-~V~v~~l-~--~~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V 85 (763)
...|+|.++|+++++-. ..+ .|.+++- + |+ +...+. .-...+.++|.++| +.++......
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence 56799999999987753 223 6766654 2 32 222222 22346889999999 4445555444
Q ss_pred EEEEccC-C----e--E-EEEecc----cCCceeEEEeecCCCceeccC
Q 004298 86 TLHDVEN-G----K--L-LRSLKS----HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 86 ~lwdve~-g----~--~-~~~l~~----h~~~V~~l~ws~~~~~l~s~s 122 (763)
++.|... + + . +..+.. +......+.|.|+|.+.++.+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4445431 1 1 1 222322 124577899999997655443
No 437
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=49.71 E-value=1.2e+02 Score=33.81 Aligned_cols=206 Identities=13% Similarity=0.157 Sum_probs=97.9
Q ss_pred ceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEec---------CCCcEEEEEEcc-----CC-
Q 004298 10 LPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTIS---------PGKSVTSLCWRP-----DG- 73 (763)
Q Consensus 10 ~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~---------~~~~V~~l~wsp-----DG- 73 (763)
+|..+-+.+ .++|++++.| +--++|+|..+|.+.|.|+.|-.+ +.-. ....|+++.|.. |+
T Consensus 77 ~P~~l~~~~--~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 77 LPLTLLDAK--QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEE-----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred Cchhheecc--CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 344443333 3669999997 667899999999999999966544 3322 123588898873 44
Q ss_pred --CEEEEEEcCCcEEEEEcc--C-CeE----EEEecccCCceeEEE-eecCC-Cc-eecc------CC------CCCccc
Q 004298 74 --KAIAVGLEDGTITLHDVE--N-GKL----LRSLKSHTVAVVCLN-WEEDA-QP-SKND------FG------NIPTYE 129 (763)
Q Consensus 74 --~~Lasg~~Dg~V~lwdve--~-g~~----~~~l~~h~~~V~~l~-ws~~~-~~-l~s~------s~------~~~~~~ 129 (763)
-.+.+|...|.+.+|.+- . |.. ......+.++|..|. ++.+. .. .++. +. -+..-.
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 378999999999999864 1 221 222234566766665 33322 11 1110 00 001112
Q ss_pred CCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc---CCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc
Q 004298 130 DRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS---HQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH 205 (763)
Q Consensus 130 d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~ 205 (763)
...+|++...... ..+..+. .........+.. ...+..|++-..+|.|+++-.-.. ++.+.++....
T Consensus 234 e~~irv~~~~~~k-------~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 234 ESDIRVFKPPKSK-------GAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp SSEEEEE-TT----------EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred ccceEEEeCCCCc-------ccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 5566666543210 0111110 000111111111 235667888889999999965443 55555543110
Q ss_pred cccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 206 VAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.. ..+...+++++|..++..+.
T Consensus 305 -d~-------------~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 305 -DS-------------RRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp --H-------------HHHTT-EE-TTS-EEEE-SS
T ss_pred -cc-------------ccccccEECCCCCEEEEeCc
Confidence 00 11334566777776665533
No 438
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=48.94 E-value=68 Score=22.29 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=24.8
Q ss_pred CCCCEEEEEe-CCCeEEEEEc-cCceEEEecCCCcEEEEEE
Q 004298 31 PEKDLLAMAT-EDSKILLHRF-NWQRLWTISPGKSVTSLCW 69 (763)
Q Consensus 31 P~~~lLA~~s-~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~w 69 (763)
|+++.+.++. .+++|.+++. +++.+..+..+.....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5676555544 5788999988 5555566665555555554
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=48.74 E-value=2.4e+02 Score=30.57 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=63.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-c-C----CCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-S-P----GKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~-~----~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+....+..+.+.|++.+++++ ..|.+.+-..++...|+. . + ...+.++.++|+++.+++| .+|.|. .....
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~ 288 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG 288 (334)
T ss_pred CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC
Confidence 334568899999999887665 467654222455566663 2 1 2357889999988866655 566554 44455
Q ss_pred CeEEEEecc---cCCceeEEEeecCCCceeccC
Q 004298 93 GKLLRSLKS---HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~~~~l~~---h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+.-...+. -......+.|..+++.++.|.
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 555444432 223577888887777777774
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=48.41 E-value=1.3e+02 Score=33.96 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=36.0
Q ss_pred CEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceecc
Q 004298 74 KAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 74 ~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
-++|+|+..|.|++||--.-.....+.+-...|..|..+.+|.++...
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEe
Confidence 389999999999999943222333455666789999999999876544
No 441
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=46.83 E-value=40 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.3
Q ss_pred EEEEEeCCCeEEEEEc-cCceEEEecCCC
Q 004298 35 LLAMATEDSKILLHRF-NWQRLWTISPGK 62 (763)
Q Consensus 35 lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~ 62 (763)
.+..++.+|.|.-.+. +|+.+|..+.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 3455688999999998 899999987543
No 442
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=46.57 E-value=1.9e+02 Score=31.24 Aligned_cols=105 Identities=14% Similarity=0.271 Sum_probs=67.8
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCe------EEEEEccC--c---eEE-----Eec-C-CC-------cEEEEEE
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSK------ILLHRFNW--Q---RLW-----TIS-P-GK-------SVTSLCW 69 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~------V~v~~l~~--~---~v~-----~~~-~-~~-------~V~~l~w 69 (763)
+++...-+....+.+.|++..+.+.+++|. +.-+++.. . .+- .+. . |. -.-+|++
T Consensus 13 ~~~~~~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~ 92 (326)
T PF13449_consen 13 EFDGIPFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV 92 (326)
T ss_pred ccCCCccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE
Confidence 344444467899999987777777787877 65555532 1 111 111 1 22 2347888
Q ss_pred ccCCCEEEEEEcC------CcEEEEEccCCeEEEEec---------------ccCCceeEEEeecCCCceec
Q 004298 70 RPDGKAIAVGLED------GTITLHDVENGKLLRSLK---------------SHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 70 spDG~~Lasg~~D------g~V~lwdve~g~~~~~l~---------------~h~~~V~~l~ws~~~~~l~s 120 (763)
.++|.++++.-.+ ..|.-++.. |+.+..+. ..+.....|+++|+|+.+.+
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 7788888877777 788888866 77665542 12356789999999985443
No 443
>PHA03098 kelch-like protein; Provisional
Probab=46.15 E-value=2.7e+02 Score=32.18 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=17.6
Q ss_pred cCCCEEEEEEcC-----CcEEEEEccCCeE
Q 004298 71 PDGKAIAVGLED-----GTITLHDVENGKL 95 (763)
Q Consensus 71 pDG~~Lasg~~D-----g~V~lwdve~g~~ 95 (763)
-+|+..+.||.+ ..+..||..+++.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 378888888865 3467788776654
No 444
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.12 E-value=41 Score=22.15 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 75 AIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.+.++..+|.+..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999887654
No 445
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=45.44 E-value=91 Score=35.78 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCeEEEEEc-cCceEEEecCC---------CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 42 DSKILLHRF-NWQRLWTISPG---------KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~---------~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+|.|.-.++ +|+.+|+...+ .....-...-.|..+.+|+.||.++.+|.++|+.+.+++.
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 567777787 88999998744 1111101112567889999999999999999999988764
No 446
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=44.65 E-value=50 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.0
Q ss_pred EEEEEeCCCeEEEEEc-cCceEEEe
Q 004298 35 LLAMATEDSKILLHRF-NWQRLWTI 58 (763)
Q Consensus 35 lLA~~s~Dg~V~v~~l-~~~~v~~~ 58 (763)
.+.+++.+|.+..++. +|+.+|..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5667888899999998 88888875
No 447
>PHA02713 hypothetical protein; Provisional
Probab=44.22 E-value=2.4e+02 Score=33.08 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=35.3
Q ss_pred CCCEEEEEeCC------CeEEEEEccCceEEEecCC---CcEEEEEEccCCCEEEEEEcCC-----cEEEEEccCCeEE
Q 004298 32 EKDLLAMATED------SKILLHRFNWQRLWTISPG---KSVTSLCWRPDGKAIAVGLEDG-----TITLHDVENGKLL 96 (763)
Q Consensus 32 ~~~lLA~~s~D------g~V~v~~l~~~~v~~~~~~---~~V~~l~wspDG~~Lasg~~Dg-----~V~lwdve~g~~~ 96 (763)
++.+.++|+.+ ..+..|+...+ .|...+. ..-..-.-.-+|+..++||.+| +|..||..+++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 55667777643 23566665332 3433211 1111122234788889998764 4788998876543
No 448
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=44.19 E-value=1.8e+02 Score=34.20 Aligned_cols=105 Identities=13% Similarity=0.005 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCCe-----EEEEEccCceEEEecCCC--cEEEEE-EccCCCEEEEEEcCC------cEEEEEccCCeEEE
Q 004298 32 EKDLLAMATEDSK-----ILLHRFNWQRLWTISPGK--SVTSLC-WRPDGKAIAVGLEDG------TITLHDVENGKLLR 97 (763)
Q Consensus 32 ~~~lLA~~s~Dg~-----V~v~~l~~~~v~~~~~~~--~V~~l~-wspDG~~Lasg~~Dg------~V~lwdve~g~~~~ 97 (763)
+|.+.|+|+.||. |-.|+... ..|...... ...+.+ -.-+|+..++||.+| +|..||..+++...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~-~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVT-NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCC-CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 5778888888864 55555532 234443211 122222 233888889998654 46778877765533
Q ss_pred Eeccc--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SLKSH--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l~~h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.-..- ..... ++ .-++...+.|+.+. .....++..+|+..
T Consensus 459 ~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~-~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 459 IAPMNTRRSGFG-VA-VLNGKIYVVGGFDG-TSALSSVERYDPET 500 (571)
T ss_pred cCCcccccccce-EE-EECCEEEEECCccC-CCccceEEEEcCCC
Confidence 22111 11111 11 22455555555222 11233466677665
No 449
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=43.67 E-value=97 Score=37.66 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=48.3
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEE-------------EEEEcc--CCCEEEEEEc----------CCcEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVT-------------SLCWRP--DGKAIAVGLE----------DGTIT 86 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~-------------~l~wsp--DG~~Lasg~~----------Dg~V~ 86 (763)
+..+..++.|+.+.-.+. +|+.+|.+..+..|. .+.-.| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 357788889999888887 899999886544331 122223 2335556643 68899
Q ss_pred EEEccCCeEEEEecc
Q 004298 87 LHDVENGKLLRSLKS 101 (763)
Q Consensus 87 lwdve~g~~~~~l~~ 101 (763)
-+|++||+.+..+..
T Consensus 340 A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 340 AFDVNTGALVWAWDP 354 (764)
T ss_pred EEECCCCcEeeEEec
Confidence 999999999887753
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=43.58 E-value=56 Score=36.22 Aligned_cols=73 Identities=27% Similarity=0.328 Sum_probs=48.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----eEEEecCCCc---EE-EEEEccCCCEEEEEEcCCcEEEE-
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-----RLWTISPGKS---VT-SLCWRPDGKAIAVGLEDGTITLH- 88 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~~~~~~---V~-~l~wspDG~~Lasg~~Dg~V~lw- 88 (763)
..+..|..+-..|+|+.+-+-+. .++.|+.+..+ ++..-.+|+. |+ ++..-.-|..+.++..||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 34566889999999998877655 67888887433 3333345532 33 22223467788999999999776
Q ss_pred EccC
Q 004298 89 DVEN 92 (763)
Q Consensus 89 dve~ 92 (763)
|+..
T Consensus 297 dvr~ 300 (733)
T COG4590 297 DVRR 300 (733)
T ss_pred eeec
Confidence 5543
No 451
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=42.48 E-value=65 Score=22.26 Aligned_cols=26 Identities=8% Similarity=0.320 Sum_probs=17.6
Q ss_pred CeEEEEEcCCCCEEEEEeC-C--CeEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATE-D--SKILLH 48 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-D--g~V~v~ 48 (763)
.-....|||||+.|+-++. + |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4678999999998886654 3 555444
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=41.66 E-value=87 Score=37.36 Aligned_cols=71 Identities=8% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCeEEEEEc--CCCCEEEEEeCCCeEEEEEccC--ceEE---EecCCCcEEEEEEccCC---C---EEEEEEcCCcEEE
Q 004298 21 ASQIKIAEWN--PEKDLLAMATEDSKILLHRFNW--QRLW---TISPGKSVTSLCWRPDG---K---AIAVGLEDGTITL 87 (763)
Q Consensus 21 ~~~V~~l~~s--P~~~lLA~~s~Dg~V~v~~l~~--~~v~---~~~~~~~V~~l~wspDG---~---~Lasg~~Dg~V~l 87 (763)
+..++.++++ ...++||++++...|.||-+.. ++.. ...+...|.+|+|-++. . .+++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3459999999 8889999999999998877622 2222 22356779999998743 2 7788889999999
Q ss_pred EEcc
Q 004298 88 HDVE 91 (763)
Q Consensus 88 wdve 91 (763)
|++.
T Consensus 243 ~~I~ 246 (717)
T PF08728_consen 243 FKIK 246 (717)
T ss_pred EEEE
Confidence 8873
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=41.42 E-value=2.8e+02 Score=29.89 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=60.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC------CeEEEEEccCceEEEec----------------CCCcEEEEEEccCCCEEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATED------SKILLHRFNWQRLWTIS----------------PGKSVTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D------g~V~v~~l~~~~v~~~~----------------~~~~V~~l~wspDG~~Lasg~ 80 (763)
..-.+++.+++.++++.=.+ ..|+-++.+|+.+-.+. .+....+++++|||+.|.++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 34578887788877765555 67777777765443331 234578999999999666654
Q ss_pred c-----CCc---------EEEEE--ccC-CeEEEE----ecc-----cCCceeEEEeecCCCceec
Q 004298 81 E-----DGT---------ITLHD--VEN-GKLLRS----LKS-----HTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 81 ~-----Dg~---------V~lwd--ve~-g~~~~~----l~~-----h~~~V~~l~ws~~~~~l~s 120 (763)
. |+. ++|+. ..+ ++.... +.. ....|+.+.+-+++++++-
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 321 55554 443 323222 221 3467888999888876654
No 454
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=40.90 E-value=4.5e+02 Score=27.51 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=68.2
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDS--KILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.++.|+.. .-...+.|..++.++-+.+.-| .|+.+++ +|+.+.... +.---..++.. +++...-.+.+|...
T Consensus 37 ~~ypHd~~--aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 37 ETYPHDPT--AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEE--TT---EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred EECCCCCc--ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence 33445543 3366788877888888887776 5777887 555554443 21112233333 456777788999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+||..+-+.+.++.- ...=+.++ .++..+..+. ....+.++|+.
T Consensus 114 ~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SD------GS~~L~~~dP~ 157 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSD------GSSRLYFLDPE 157 (264)
T ss_dssp EEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-------SSSEEEEE-TT
T ss_pred EEccccceEEEEEec-CCcceEEE--cCCCEEEEEC------CccceEEECCc
Confidence 999999998888753 33334444 4555444432 24566666754
No 455
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.19 E-value=1.3e+02 Score=30.63 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=46.3
Q ss_pred ccccceeEeec----CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc
Q 004298 6 AMRVLPFQLQF----DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP 71 (763)
Q Consensus 6 ~~~~~~~~~~~----~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp 71 (763)
.++..+|.++. +.+.|++ ++..-+|++.+++-+.++|...+. +|+.+..++ +...|+|.||--
T Consensus 195 snr~~i~dlrk~~~~e~~~PDG---m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDG---MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCc---ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 34556666664 5555543 445668899888888899988888 788887776 778899999953
No 456
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=39.14 E-value=66 Score=20.99 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=16.7
Q ss_pred CcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 62 KSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 62 ~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
+.|.+++-.+ ++++++.+.+.+|+|
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEec
Confidence 4566666655 477777777777776
No 457
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=38.34 E-value=1.9e+02 Score=31.67 Aligned_cols=95 Identities=18% Similarity=0.109 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEE-EccC------c--eEEE-ecC-----CCcEEEEEEccCCCEEEEEEcC------
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLH-RFNW------Q--RLWT-ISP-----GKSVTSLCWRPDGKAIAVGLED------ 82 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~-~l~~------~--~v~~-~~~-----~~~V~~l~wspDG~~Lasg~~D------ 82 (763)
...+++.+++ ++++ . ...|..+ +.++ + .+.. +.. ......++|.|||++.++-+..
T Consensus 74 p~Gi~~~~~G-lyV~-~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYVA-T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEEe-C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 4678888888 5553 3 3345434 3333 1 1222 211 2347789999999865544311
Q ss_pred -------------CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 83 -------------GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 -------------g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|.|.-++..+++. ..+...-.....++|+++|.++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3455555544433 23322223457899999998776643
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=38.10 E-value=6.2e+02 Score=28.41 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCc------eEEEecCCCcEEEEEEcc-----CCCEEEEEEcCCcEEEEEcc--CCe----
Q 004298 32 EKDLLAMATEDSKILLHRFNWQ------RLWTISPGKSVTSLCWRP-----DGKAIAVGLEDGTITLHDVE--NGK---- 94 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l~~~------~v~~~~~~~~V~~l~wsp-----DG~~Lasg~~Dg~V~lwdve--~g~---- 94 (763)
..+.|++|+..|.++||+.... .+...+-+.+|..+..-+ +...||+ -.-..+.+|.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3489999999999999998332 344445567777766543 2335555 566778888873 222
Q ss_pred ---EEEEecccC--CceeEEEeecCC-----CceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccc
Q 004298 95 ---LLRSLKSHT--VAVVCLNWEEDA-----QPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 95 ---~~~~l~~h~--~~V~~l~ws~~~-----~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~ 162 (763)
.+..+..|. .....+.+.|-| .++..-+ .||.+.|++-.... ..++. .-..+.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS------~DG~L~~feqe~~~f~~~lp~--~llPgP------- 179 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQS------MDGSLSFFEQESFAFSRFLPD--FLLPGP------- 179 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEe------cCceEEEEeCCcEEEEEEcCC--CCCCcC-------
Confidence 122222332 233344444432 2233333 68888888755421 01111 000000
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..+.++-+.+++++.+..+.-|-|..
T Consensus 180 -----l~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 180 -----LCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred -----eEEeecCCEEEEecCceeEEEecHHH
Confidence 12335556788888888888775543
No 459
>PRK10115 protease 2; Provisional
Probab=37.82 E-value=65 Score=38.74 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=39.0
Q ss_pred cEEEEEEccCCCEEEEEEcC-----CcEEEEEccCCeEEEE-ecccCCceeEEEeecCCCceecc
Q 004298 63 SVTSLCWRPDGKAIAVGLED-----GTITLHDVENGKLLRS-LKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~g~~~~~-l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
.+..+.|+|||++||.+.+. ..+++.|+.+|+.+.. +.. .-..+.|.+|++.+.-.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEE
Confidence 36778999999999887643 3588999988874322 222 11469999998765444
No 460
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.79 E-value=1.6e+02 Score=36.97 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNW 52 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~ 52 (763)
.+|.....++|+|...++|.++..|.|.+|...+
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 3445577899999999999999999999998754
No 461
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.69 E-value=1.3e+02 Score=36.59 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=50.9
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcE---------EEEEEc----------------cCCCEEEEEEcCCcEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSV---------TSLCWR----------------PDGKAIAVGLEDGTIT 86 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V---------~~l~ws----------------pDG~~Lasg~~Dg~V~ 86 (763)
++.+.+++.++.|.-.+. +|+.+|++.++..+ +.+.+- .++..+..+..|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888888888887 89999998754322 223321 1345888899999999
Q ss_pred EEEccCCeEEEEec
Q 004298 87 LHDVENGKLLRSLK 100 (763)
Q Consensus 87 lwdve~g~~~~~l~ 100 (763)
-.|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999999987764
No 462
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=36.61 E-value=1.4e+02 Score=36.60 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=51.5
Q ss_pred EEEEEeC-CCeEEEEEccCceEE--EecCCCcEEEEEEccCCCEEEE-EEcCC-----cEEEEEccC-CeEEEEecccCC
Q 004298 35 LLAMATE-DSKILLHRFNWQRLW--TISPGKSVTSLCWRPDGKAIAV-GLEDG-----TITLHDVEN-GKLLRSLKSHTV 104 (763)
Q Consensus 35 lLA~~s~-Dg~V~v~~l~~~~v~--~~~~~~~V~~l~wspDG~~Las-g~~Dg-----~V~lwdve~-g~~~~~l~~h~~ 104 (763)
.||-... .+.+.+-+.+|.... .+.....|.+-+|||||+.||- .+-.+ .|.+-++.+ |.-+-++.....
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 3444443 347777777654333 3567788999999999999988 33333 488888864 434445555455
Q ss_pred ceeEEEeecCCC
Q 004298 105 AVVCLNWEEDAQ 116 (763)
Q Consensus 105 ~V~~l~ws~~~~ 116 (763)
.|..-...++|.
T Consensus 400 aiprwrv~e~gd 411 (912)
T TIGR02171 400 AIPRWRVLENGD 411 (912)
T ss_pred cccceEecCCCC
Confidence 665555556554
No 463
>PHA03098 kelch-like protein; Provisional
Probab=36.12 E-value=4.4e+02 Score=30.43 Aligned_cols=63 Identities=6% Similarity=0.025 Sum_probs=34.4
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcC------CcEEEEEccCCeEE
Q 004298 32 EKDLLAMATED-----SKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLED------GTITLHDVENGKLL 96 (763)
Q Consensus 32 ~~~lLA~~s~D-----g~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~D------g~V~lwdve~g~~~ 96 (763)
++.+++.|+.+ ..+..|+...+ .|... ....-.+. ..-+|+..+.|+.+ +.+..||..+++..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGES-KWREEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCC-ceeeCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777755 24666666332 34432 11111112 22377888888732 45788898876543
No 464
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=34.30 E-value=8.3e+02 Score=29.46 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---h--CCCCC------ChHHHHHHhhhccc
Q 004298 273 ELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDSLSTLIV---D--NGLDS------SPQEEFLSLLGGAR 341 (763)
Q Consensus 273 ~l~~la~~~s~i~~ll~~~~~~~~~m~~~W~~~~~~~~~~l~~~~~~l~---~--~~~~~------~~~~~l~~ll~tG~ 341 (763)
+++.+.....++..++.++..++..+. ..+..+..++..|..+.+.+. . +|.+- .+..++-.||-+=.
T Consensus 21 ni~~l~~s~~~v~~l~~~ld~a~~e~d-~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 21 NIHSLLESEKQVNSLMEYLDEALAECD-ELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 466666677778888888877776553 445555666666666666553 1 22221 24555556665555
Q ss_pred CChhHHHHHHh-hhch-hhHHHHHHHHhhhHH
Q 004298 342 TSPPIHQFLAN-SLGE-AGVKRVSKAVCGAGK 371 (763)
Q Consensus 342 ~s~~l~~fL~~-~l~e-rglKr~~k~v~~~~~ 371 (763)
.+|..-+=|.+ .|.+ .|+++++.+...-|.
T Consensus 100 i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~ 131 (701)
T PF09763_consen 100 IPEEHLEALRNASLSSPDGLEKIEEAAEALYK 131 (701)
T ss_pred CCHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Confidence 56555555543 5533 357776655444443
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=32.73 E-value=1.9e+02 Score=33.10 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=53.6
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-c---EEEEEEccCCCEEEEEEc-------------CCcEEEEE
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-S---VTSLCWRPDGKAIAVGLE-------------DGTITLHD 89 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-~---V~~l~wspDG~~Lasg~~-------------Dg~V~lwd 89 (763)
+..-++|.+++... +.+..+++.|+.+|...... . -..+.+-|+|++|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888887655 78889999998888776332 2 356888899999988882 11255666
Q ss_pred ccCCeEEEEecc--cC-------------------------CceeEEEeec-CCCceeccC
Q 004298 90 VENGKLLRSLKS--HT-------------------------VAVVCLNWEE-DAQPSKNDF 122 (763)
Q Consensus 90 ve~g~~~~~l~~--h~-------------------------~~V~~l~ws~-~~~~l~s~s 122 (763)
.+|+.+..+.. |- -.+.++.+.+ ++..++|+.
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR 290 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR 290 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC
Confidence 78887766431 10 2467888888 556666654
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=31.74 E-value=3.3e+02 Score=29.11 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=48.4
Q ss_pred EeCCCeEEEEEccCceEEEecCCCc---EEEEEEcc------CCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 39 ATEDSKILLHRFNWQRLWTISPGKS---VTSLCWRP------DGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 39 ~s~Dg~V~v~~l~~~~v~~~~~~~~---V~~l~wsp------DG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+..-|.|.+|+++|+.+.++.++.. .+.|+..| .|.+|+---.||+|..+|..+|+.+..+..
T Consensus 218 G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 218 GAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 3445789999999999998876543 45566655 466666666899999999999998877764
No 467
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=31.69 E-value=8.4e+02 Score=28.00 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhccccccccccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 004298 386 EIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSV-------VQQFSNFFNWLLKC 453 (763)
Q Consensus 386 er~~~~l~~L~Gla~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-------~~~f~~F~~WL~~~ 453 (763)
+..--...+..||..|--..++ .++.++.+.+.+-..+.+..+.+..|.+. ...|..+-+|+-.+
T Consensus 247 ~~~~~~~~~W~~L~~WF~~~~~---~~s~~~~L~~~t~~aI~~l~~~~~ri~e~~~~~~sR~~d~~~LA~wF~~~ 318 (486)
T PF09660_consen 247 EWRERWRARWEGLRAWFVGSGG---RPSEAERLRDATREAIRKLLRNARRITERRRGGSSRKADLRHLARWFAAC 318 (486)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhC
Confidence 4455566777788888764332 56788888888888888888888888885 68999999999865
No 468
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=31.68 E-value=1.8e+02 Score=20.40 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=24.2
Q ss_pred CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 52 WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 52 ~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
|+.+....+.+.++...|...|+.+..-..+|.+.-|
T Consensus 5 g~l~~~~~p~G~~~~~~YD~~Grl~~~tdp~g~~~~~ 41 (42)
T TIGR01643 5 GRLTGSTDADGTTTRYTYDAAGRLVEITDADGGSTRY 41 (42)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEe
Confidence 4444455566667777787778777777777665443
No 469
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=30.76 E-value=1.1e+02 Score=36.50 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS-----KILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+.-..++|-|+|.++|+-..|| .|..+.-||-+--.+. -...+..++|+-....+|++- .+.+++|...+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence 3345589999999999866444 4555555654432221 234577889988777777654 46799998765
Q ss_pred CeEEEEecccCCceeEEEeecCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~ 115 (763)
-...-+..-.-..|.-+.|+|..
T Consensus 326 yhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred eEEEEEEeecCCCcceeeecccc
Confidence 44332222223567788999864
No 470
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=30.04 E-value=92 Score=21.62 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+.++..||.+.-.|.++|+.+.+++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45568999999999999999988764
No 471
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=29.89 E-value=82 Score=31.93 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=28.9
Q ss_pred EEEEEeCCCeEEEEEccCceEEEec--CC-CcEEEEEEccCCCEEEEE--EcCCcEEEEEcc
Q 004298 35 LLAMATEDSKILLHRFNWQRLWTIS--PG-KSVTSLCWRPDGKAIAVG--LEDGTITLHDVE 91 (763)
Q Consensus 35 lLA~~s~Dg~V~v~~l~~~~v~~~~--~~-~~V~~l~wspDG~~Lasg--~~Dg~V~lwdve 91 (763)
+.-++..||.|+.|+....++..+. |+ ..+.....+..+++++++ +.|..++.|+++
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 5566788899977776433333322 33 333333333344444444 444445555543
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=29.58 E-value=99 Score=29.91 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCeEEEEEccC
Q 004298 22 SQIKIAEWNPEK------DLLAMATEDSKILLHRFNW 52 (763)
Q Consensus 22 ~~V~~l~~sP~~------~lLA~~s~Dg~V~v~~l~~ 52 (763)
..|..++|||.| .+||+.+.++.|.||...+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 369999999955 5899999999999998744
No 473
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=29.36 E-value=1.1e+03 Score=28.70 Aligned_cols=70 Identities=14% Similarity=-0.032 Sum_probs=36.4
Q ss_pred eeEEEEEcCCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeee-ccceeeEEecCCCCEEEEEeecC
Q 004298 174 FSILCSGDKDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLL-NASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~-~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.+++....||+|.+++-..+..-... ....+....+.-.+..++.- -.++..++|||.+..++....++
T Consensus 271 ~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~ 342 (753)
T PF11635_consen 271 DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDG 342 (753)
T ss_pred CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCC
Confidence 347888899999999976555221111 00001111111111111110 01345689999999888876654
No 474
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=29.33 E-value=1.1e+02 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=40.6
Q ss_pred hHHHHHHhhhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Q 004298 345 PIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEII 388 (763)
Q Consensus 345 ~l~~fL~~~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~ 388 (763)
.+.+|.+..+++.-.+++++++..+.+.+..++.+.+..|++++
T Consensus 140 ~v~~yVL~~f~~~E~~~l~~~~~~a~~~l~~~i~~~~~~~mn~~ 183 (184)
T PF01195_consen 140 DVADYVLSKFSPEERELLDKVIPQAAEALEQIIEGGFEKAMNKF 183 (184)
T ss_dssp GHHHHHTSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 79999999999999999999999999999999999999888875
No 475
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=29.30 E-value=1.8e+02 Score=33.83 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=47.6
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCc--EEE----------EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKS--VTS----------LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~--V~~----------l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..+.+++.++.|.-.+. +|+.+|+...+.. +.. ++. .+..+.+++.||.+.-.|.++|+.+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 456667777888888887 8999999874321 111 111 2346778889999999999999998765
Q ss_pred c
Q 004298 100 K 100 (763)
Q Consensus 100 ~ 100 (763)
.
T Consensus 147 ~ 147 (527)
T TIGR03075 147 K 147 (527)
T ss_pred c
Confidence 4
No 476
>PF09361 Phasin_2: Phasin protein; InterPro: IPR018968 Phasins (or granule-associate proteins) are surface proteins found covering Polyhydroxyalkanoate (PHA) storage granules in bacteria. Polyhydroxyalkanoates are linear polyesters produced by bacterial fermentation of sugar or lipids for the purpose of storing carbon and energy, and are accumulated as intracellular granules by many bacteria under unfavorable conditions, enhancing their fitness and stress resistance []. The layer of phasins stabilises the granules and prevents coalescence of separated granules in the cytoplasm and nonspecific binding of other proteins to the hydrophobic surfaces of the granules. For example, in Ralstonia eutropha (strain ATCC 17699/H16/DSM 428/Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)), the major surface protein of polyhydroxybutyrate (PHB) granules is phasin PhaP1(Reu), which occurs along with three homologues (PhaP2, PhaP3, and PhaP4) that have the capacity to bind to PHB granules but are present at minor levels [, ]. These four phasins lack a highly conserved domain but share homologous hydrophobic regions. This entry describes a group of phasins that associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB).
Probab=29.21 E-value=3.5e+02 Score=22.83 Aligned_cols=81 Identities=7% Similarity=0.073 Sum_probs=48.9
Q ss_pred hhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhccccccccccccCCCHHHHHHHHHHHhHHHHHHHHH
Q 004298 353 SLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERF 432 (763)
Q Consensus 353 ~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~l 432 (763)
..+.+++..+.+.....++.++++...++--+=..+-..+.-+..++.-++.-+-+.+..+.+....+....-.....++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~a~~~~e~~~~Q~~~~~~~~e~~~~~~~~~~e~ 85 (102)
T PF09361_consen 6 EAQQKNLEAFQALAEAALEGAEALAALNLEAARQNVEEAFAQAQQLASAKDPQELVALQSEFAQEQFERLASYARELAEI 85 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777766666666666666666655543444444455555544444433333333
Q ss_pred H
Q 004298 433 M 433 (763)
Q Consensus 433 ~ 433 (763)
.
T Consensus 86 ~ 86 (102)
T PF09361_consen 86 A 86 (102)
T ss_pred H
Confidence 3
No 477
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.94 E-value=1.3e+02 Score=19.32 Aligned_cols=23 Identities=0% Similarity=0.156 Sum_probs=13.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEE
Q 004298 25 KIAEWNPEKDLLAMATEDSKILL 47 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v 47 (763)
..++.+++|+++++-+..+.|.+
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 44566666666665555555543
No 478
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=28.61 E-value=1.7e+02 Score=31.13 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=51.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC--C----cEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG--K----SVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~--~----~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
+.++.-.++|++|+++-.-..|.+.+- +|+.+|.+... . .-...+|-.|-+++-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 677888889999999988889988885 88999998522 1 1223666667777777788999999985
No 479
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair]
Probab=28.24 E-value=5e+02 Score=26.74 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=63.5
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhccccccccccccCCCHHHHHHHHHHHh
Q 004298 344 PPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSG 423 (763)
Q Consensus 344 ~~l~~fL~~~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~~~~~~lgl~~~~~~~~~~~~~ 423 (763)
+.+..||-.--.|||+-- ....+-..-++.++-++.+ .|++.|.. +|+..+...+....
T Consensus 8 ~~l~~yl~~L~~Er~lS~--------------hTl~~Y~rqL~~l~~~~~~-~~~~~w~~------ld~~~vr~~~a~~~ 66 (299)
T COG4973 8 ADLDAYLRYLRVERQLSP--------------HTLANYRRQLEALIALLAQ-MGLGSWQQ------LDPADVRAFVARSH 66 (299)
T ss_pred HHHHHHHHHHHHhhccCH--------------HHHHHHHHHHHHHHHHHHH-cCccchhh------cCHHHHHHHHHHHh
Confidence 466777766556665521 1111223344555554444 58888876 77888887776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------CCCCC-CCChHHHHHHHH
Q 004298 424 MFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEP--------SDQLP-RYNSELVVIFLK 478 (763)
Q Consensus 424 ~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~~e~--------~~~~~-~~d~~~v~~fl~ 478 (763)
.--+.... +...+...+.|+.||...=..-+.+. ...+| ..|.+.+..+++
T Consensus 67 ~~Gl~~~S----lA~rLSa~R~f~~wLv~~g~l~anPa~GvsaPK~~r~LPk~ld~d~~~~ll~ 126 (299)
T COG4973 67 RRGLSARS----LARRLSALRSFYDWLVKQGELKANPAKGVSAPKQPRHLPKNLDVDEANRLLD 126 (299)
T ss_pred cCCccHHH----HHHHHHHHHHHHHHHHHcCccccCccccCCCCCCccccCCcCCHHHHHHHhc
Confidence 54444443 34456678899999965532222221 12233 358888888887
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=27.26 E-value=6.5e+02 Score=26.59 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEEccCceEEEecC------CCcEEEEEEcc-CCC-EEEEEE-cCC
Q 004298 19 PVASQIKIAEWNPEKDLLAMAT------EDSKILLHRFNWQRLWTISP------GKSVTSLCWRP-DGK-AIAVGL-EDG 83 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s------~Dg~V~v~~l~~~~v~~~~~------~~~V~~l~wsp-DG~-~Lasg~-~Dg 83 (763)
.+.+.|..+.|..+.++++.|. ....+..|+++.+..-.+.. .++|+.+.+.. |+. +.+.|. .+|
T Consensus 34 ~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 34 GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 4667899999997777777764 34567888887664323332 25688887754 554 444443 444
Q ss_pred cEEE
Q 004298 84 TITL 87 (763)
Q Consensus 84 ~V~l 87 (763)
...|
T Consensus 114 ~~~l 117 (281)
T PF12768_consen 114 STFL 117 (281)
T ss_pred CceE
Confidence 4333
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.91 E-value=1.3e+03 Score=29.73 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=78.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEecC-CCcEEE--------EEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFN-WQRLWTISP-GKSVTS--------LCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~~-~~~V~~--------l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+-+-|.... |..+.|+.+.+|+.+ ++..-.+.. ...|.. =.|-|.=+++.+-..--.|.|+.+...+..
T Consensus 84 mGiFpeI~R-aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 84 MGIFPEIGR-AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred eccchhhcc-eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence 444454444 346779999999993 333222220 011111 123444456666555666777765422110
Q ss_pred ---------EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC----------C-C-CCCCCCCccc----C
Q 004298 97 ---------RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP----------A-P-RIPQMPGLVS----G 151 (763)
Q Consensus 97 ---------~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~----------~-~-~~~~l~~~~s----~ 151 (763)
.++......|.|+....+|+.+.+|. |+ .+|.. . . +.....+..+ .
T Consensus 163 ~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-------dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs 233 (1311)
T KOG1900|consen 163 GELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-------DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS 233 (1311)
T ss_pred CcccccccceeeecCCceEEEEEeccCCcEEEeec-------CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence 22333356789999889999888875 33 22211 1 0 0000000000 0
Q ss_pred CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 152 DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...+.....+.+..+. .++..++|.+=+..|+|..|+.+.
T Consensus 234 ~~~~~~~~~dpI~qi~--ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQIT--IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcCCCCCCCcceeeE--eccccceeeeeccCceEEEEEccC
Confidence 0000011122333333 345667899999999999998765
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=26.33 E-value=9.6e+02 Score=26.94 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=44.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEc-----c----------------Cc---eEEEecCCCcEEEEEEcc---CCCEEEEE
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRF-----N----------------WQ---RLWTISPGKSVTSLCWRP---DGKAIAVG 79 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l-----~----------------~~---~v~~~~~~~~V~~l~wsp---DG~~Lasg 79 (763)
+.++|..+.+++++.+..+.-|+. . ++ .-|+++-|+.+..|..-. .-..+++-
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL 259 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL 259 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE
Confidence 789999999999999999998885 1 11 247777777766654433 22233333
Q ss_pred EcCCcEEEEEccCCeEEEEec
Q 004298 80 LEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+ ..++...+ .+|......+
T Consensus 260 g-er~Lf~l~-~~G~l~~~kr 278 (418)
T PF14727_consen 260 G-ERSLFCLK-DNGSLRFQKR 278 (418)
T ss_pred e-cceEEEEc-CCCeEEEEEe
Confidence 2 44555555 3565544433
No 483
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=25.73 E-value=6e+02 Score=27.36 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=48.7
Q ss_pred CCCEEEEEeCCCeEEEEEcc-CceEEEecCCCcEEEEEEccCCCEEEEEEc----C----------------CcEEEEEc
Q 004298 32 EKDLLAMATEDSKILLHRFN-WQRLWTISPGKSVTSLCWRPDGKAIAVGLE----D----------------GTITLHDV 90 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~~~~~V~~l~wspDG~~Lasg~~----D----------------g~V~lwdv 90 (763)
++++-++-+..|.|.-++.+ |+..--..-.+...+++|. |.++++|-+ + .-|.+.|+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl 289 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDL 289 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEEC
Confidence 34454554555555555553 4322222222356788887 888888753 1 13678888
Q ss_pred cCCeEEEEeccc--CCceeEEEeecCCC
Q 004298 91 ENGKLLRSLKSH--TVAVVCLNWEEDAQ 116 (763)
Q Consensus 91 e~g~~~~~l~~h--~~~V~~l~ws~~~~ 116 (763)
.+|..++.++-. -..+..+..-|.-+
T Consensus 290 ~tG~vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 290 NSGDVVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred CCCCEEEEEEeCCceeEEEEEEEecCCC
Confidence 888888876532 24566777766543
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=24.88 E-value=1.1e+03 Score=26.94 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCce---EEEec------CCCcEEEEEEccCC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQR---LWTIS------PGKSVTSLCWRPDG 73 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~---v~~~~------~~~~V~~l~wspDG 73 (763)
-+.|+|.|+++++++--..|.|++++..+.. +..+. ...-...|+++||-
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4789999999988776657999888763321 21221 12447889999984
No 485
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=24.85 E-value=1.6e+02 Score=34.98 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCc--EEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATED---------SKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGT--ITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D---------g~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~--V~lwdve~ 92 (763)
+.....+|.+..++..... ..+++.+ +..+-...++..+..+.|+|||+.++..+.++. ..+|-+..
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~ 92 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSD--GKTVRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDV 92 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEe--cccccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEec
Confidence 4456677777666554432 2232222 222333346778899999999999999884443 34444332
Q ss_pred CeEEEEecccCCceeEEEeecCCCceec
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s 120 (763)
+. .+..+...|....|++.+..++.
T Consensus 93 ~g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 93 GG---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred CC---ceeeeecccccceeCCCCCeEEE
Confidence 21 23334567888899999887665
No 486
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=24.78 E-value=1.2e+02 Score=25.75 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.6
Q ss_pred CcEEEEEEccCCCEEEEEE-cCCcEEEEEcc
Q 004298 62 KSVTSLCWRPDGKAIAVGL-EDGTITLHDVE 91 (763)
Q Consensus 62 ~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve 91 (763)
...+.|..+||+++|.+++ ..+.|++|..+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3467899999999998887 66889988765
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=24.11 E-value=9.6e+02 Score=27.32 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=33.3
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCceEEEe-c---CCCcEEEEEEccCCCEEEEEEcC--CcEEEEEccCCeE
Q 004298 32 EKDLLAMATEDS-----KILLHRFNWQRLWTI-S---PGKSVTSLCWRPDGKAIAVGLED--GTITLHDVENGKL 95 (763)
Q Consensus 32 ~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~-~---~~~~V~~l~wspDG~~Lasg~~D--g~V~lwdve~g~~ 95 (763)
++.++++|+.++ .+..|+...+. |.. . ....-.++ -.-+|+..++|+.+ .++..||..+++.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeE
Confidence 345667776543 45566663322 332 2 11111122 23478888888854 4577888766544
No 488
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=23.53 E-value=2.7e+02 Score=29.67 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=50.4
Q ss_pred EEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCc-----eeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVA-----VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 64 V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~-----V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
++++.-.++|.+|++.-.-.+|.+.|-.+|+++..+.+.... -....|..+-+++..+. .++.|.++|-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~------~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESN------DDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCC------CCCEEEEEcC
Confidence 788888899999999999999999999999999998664221 11244444444443333 5778888876
Q ss_pred C
Q 004298 139 A 139 (763)
Q Consensus 139 ~ 139 (763)
.
T Consensus 220 ~ 220 (299)
T PF14269_consen 220 A 220 (299)
T ss_pred C
Confidence 3
No 489
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=23.44 E-value=2.9e+02 Score=30.19 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCC---cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGK---SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~---~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
...+.+++.+|.|.-.+. ++..+|...... .+.+-....||+ |.+++.+|.+..+|..+|+.+.......
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=22.87 E-value=7.1e+02 Score=29.70 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=28.5
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
-.+.|.++.+.++++.+.+...+|.|.+||.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 3467899999999999999999999999999
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=22.86 E-value=1.1e+03 Score=26.23 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=55.9
Q ss_pred EEEEEE--cc-CCC-EEEEEEcCCcEEEEEcc---CC----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 64 VTSLCW--RP-DGK-AIAVGLEDGTITLHDVE---NG----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 64 V~~l~w--sp-DG~-~Lasg~~Dg~V~lwdve---~g----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
+..+|. +| +|+ +.++...+|.+.-|-+. +| +.+++|.. .+.+..|........+..+- ++.-
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgE------E~~G 230 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGE------EDVG 230 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEE------TTTE
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEec------CccE
Confidence 445554 33 454 44445566666555543 23 34555543 34566666655544444443 4544
Q ss_pred eeecCCCCCCCCCCCccc--CCcccccCCcccccceec--ccCCCeeEEEEEcCCCcEEEEEcCc--eeeeeeeecc
Q 004298 133 SRFFPPAPRIPQMPGLVS--GDTGFTDDSEDSFRELAN--SSHQRFSILCSGDKDGSICFNIFGI--FPIGKINIHK 203 (763)
Q Consensus 133 i~~wd~~~~~~~l~~~~s--~~~~~~~~~~~~~~~~~~--~~~~~~~~L~sgs~DG~I~lw~~~~--~~ig~~~i~~ 203 (763)
|.-|+..+.......... ....+. ..+.-+.. .....+-++++.-.+++..+|+... -..|.+.+..
T Consensus 231 IW~y~Aep~~~~~~~~v~~~~g~~l~----aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i~~ 303 (381)
T PF02333_consen 231 IWRYDAEPEGGNDRTLVASADGDGLV----ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRIGD 303 (381)
T ss_dssp EEEEESSCCC-S--EEEEEBSSSSB-----S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEEE-
T ss_pred EEEEecCCCCCCcceeeecccccccc----cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEecc
Confidence 545555543221111110 000111 11111222 1223444666666788899997543 2467776643
No 492
>PHA00724 hypothetical protein
Probab=22.77 E-value=69 Score=25.64 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 004298 440 VQQFSNFFNWLLKC 453 (763)
Q Consensus 440 ~~~f~~F~~WL~~~ 453 (763)
+-+|.-||+|||.+
T Consensus 68 l~n~~fffnwlree 81 (83)
T PHA00724 68 LINFAFFFNWLREE 81 (83)
T ss_pred HHHHHHHHHHHHHh
Confidence 45799999999965
No 493
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=22.28 E-value=6.7e+02 Score=25.40 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcccccccc-ccccCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 004298 386 EIIGFRMGELRGLSRWRAR-FHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQ 464 (763)
Q Consensus 386 er~~~~l~~L~Gla~~~~~-~~~lgl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~~e~~~~ 464 (763)
...+.-+..+.++++|.-. .+. ++.+...++++.++.++.....+..++.... -. .|....+.+..-+. .
T Consensus 58 ~~~L~~l~~~l~~~k~Ep~l~G~--FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~--~~---~~~~~l~~~~~~~~--~ 128 (229)
T PF10334_consen 58 QQSLNSLRTLLAFAKFEPSLKGR--FPKETYQRLLELCQNILDLLSLLSYVSTRLE--PS---EWRERLLRRTGWLR--P 128 (229)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hh---hHHHHHHHHHHhhc--h
Confidence 3344566777788888865 333 5789999999999988877766655544331 12 44444433333220 0
Q ss_pred CCCCChHHHHHHHHhhc-CCChhhhccCC
Q 004298 465 LPRYNSELVVIFLKFLY-DQDPVRQLLEP 492 (763)
Q Consensus 465 ~~~~d~~~v~~fl~~~~-~~~~~~~~l~~ 492 (763)
.-..|+..|+.-+...| +..|+.+|+..
T Consensus 129 ~~~~~i~~vl~~ls~al~~g~pLP~~lp~ 157 (229)
T PF10334_consen 129 ELIGDIFSVLYMLSSALRTGQPLPPYLPA 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCCc
Confidence 01124455555566555 46677777663
No 494
>PHA02790 Kelch-like protein; Provisional
Probab=22.20 E-value=9e+02 Score=27.58 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=34.8
Q ss_pred CCCEEEEEeCCC--eEEEEEccCceEEEecCC---CcEEEEEEccCCCEEEEEEcCC---cEEEEEccCCeEE
Q 004298 32 EKDLLAMATEDS--KILLHRFNWQRLWTISPG---KSVTSLCWRPDGKAIAVGLEDG---TITLHDVENGKLL 96 (763)
Q Consensus 32 ~~~lLA~~s~Dg--~V~v~~l~~~~v~~~~~~---~~V~~l~wspDG~~Lasg~~Dg---~V~lwdve~g~~~ 96 (763)
++.+.++|+.++ .+..|+... .-|...+. .......-.-+|+..++|+.++ .+..||.++++..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~-n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGD-AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCC-CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 567777777543 466666532 23443211 1111112234788888888654 4677887766543
No 495
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=22.05 E-value=6.9e+02 Score=31.34 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 004298 424 MFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLM 458 (763)
Q Consensus 424 ~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~ 458 (763)
+++-..+++..+...|.-....|..||...+..+.
T Consensus 510 ~~ielLeefv~vfg~e~l~l~~Fleil~~Gle~~k 544 (1108)
T COG3857 510 ALIELLEEFVEVFGDEKLSLELFLEILHIGLESLK 544 (1108)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhhhhce
Confidence 34445566666666777788899999999987765
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.85 E-value=2.5e+02 Score=29.70 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=38.6
Q ss_pred cCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 81 EDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 81 ~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.-..|++||..+.+...--.+-.+.|+.|.|..+.+.++.|...........+..||...
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 345699999887765544334467899999997777777765222221344555666654
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.56 E-value=8.3e+02 Score=25.20 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=50.7
Q ss_pred EEcCCCCEEEEEeCC---CeEEEEEccC---ceEEEec-----CCCcEEEEEEccCCCEEEEEEcCCc-EEEEEccC--C
Q 004298 28 EWNPEKDLLAMATED---SKILLHRFNW---QRLWTIS-----PGKSVTSLCWRPDGKAIAVGLEDGT-ITLHDVEN--G 93 (763)
Q Consensus 28 ~~sP~~~lLA~~s~D---g~V~v~~l~~---~~v~~~~-----~~~~V~~l~wspDG~~Lasg~~Dg~-V~lwdve~--g 93 (763)
.+-|+|+++.+|+.. ..+++++... ..-|.-. .+..-.+..-=|||+.|++|+.+.. .-.|.-.. .
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 355788998887653 2477777522 2234322 2333444555679999999997753 34444321 1
Q ss_pred eEEEE-eccc------CCceeEEEeecCCCceeccC
Q 004298 94 KLLRS-LKSH------TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 94 ~~~~~-l~~h------~~~V~~l~ws~~~~~l~s~s 122 (763)
..... +-.. ..---.+...|+|+.++.+.
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 11111 1110 11112455578888887764
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=21.49 E-value=1.6e+02 Score=35.42 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=65.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC-------CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG-------KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~-------~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.+.++.+++. . +..|..||++-.|--.-...|...+. .+|.+.++..| +..|+.+|.|.++.+++...
T Consensus 583 ~v~~l~~ss~-S-lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~ 657 (925)
T KOG3522|consen 583 SVKLLLFSSG-S-LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIR 657 (925)
T ss_pred hhhhhhcccc-c-cccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhhc---eeeeecCCceEEEechhccc
Confidence 3555555432 1 22345566665554322222544321 35677777665 56788899999999987665
Q ss_pred EEEecc---cCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 96 LRSLKS---HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 96 ~~~l~~---h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
...... |...|++|....++-+++..+++...+. ++-.+|+.
T Consensus 658 ~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hl 702 (925)
T KOG3522|consen 658 SWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHL 702 (925)
T ss_pred cchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCc
Confidence 555444 4468999999988888776664433333 34444543
No 499
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=21.38 E-value=1.9e+02 Score=35.46 Aligned_cols=52 Identities=8% Similarity=0.183 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCEEEE-EeCCC-----eEEEEEc--cCceEEEec-CCCcEEEEEEccCCCE
Q 004298 24 IKIAEWNPEKDLLAM-ATEDS-----KILLHRF--NWQRLWTIS-PGKSVTSLCWRPDGKA 75 (763)
Q Consensus 24 V~~l~~sP~~~lLA~-~s~Dg-----~V~v~~l--~~~~v~~~~-~~~~V~~l~wspDG~~ 75 (763)
|.+.+|||||+.||- .+..+ .|++.++ ++..+.++. .+..|..-...++|..
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDT 412 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCe
Confidence 888999999999998 44444 4888888 454544443 2334444444556653
No 500
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=21.13 E-value=1.2e+03 Score=26.40 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCEEEEEeC--------------------CCeEEEEEccCce-EEEecCC---CcEEEEEEcc--CCCEEE
Q 004298 24 IKIAEWNPEKDLLAMATE--------------------DSKILLHRFNWQR-LWTISPG---KSVTSLCWRP--DGKAIA 77 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~--------------------Dg~V~v~~l~~~~-v~~~~~~---~~V~~l~wsp--DG~~La 77 (763)
-..+-|.|..+.++++.. ..++.+|++...+ +..+.-+ .-+..|+|.. +..+=.
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 456788998888887642 3489999995544 4455533 3455677655 444444
Q ss_pred EEE-cCCcEEEEE-ccCCeEEE----Eeccc-----------------CCceeEEEeecCCCceeccCCCCCcccCCcee
Q 004298 78 VGL-EDGTITLHD-VENGKLLR----SLKSH-----------------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 78 sg~-~Dg~V~lwd-ve~g~~~~----~l~~h-----------------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~ 134 (763)
+|+ -..+|..|- -++|+... .+... ..-|+.|..|.|.+++..+. |..|.+|
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~-----W~~Gdvr 337 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN-----WLHGDVR 337 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE-----TTTTEEE
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc-----ccCCcEE
Confidence 443 445554443 34554221 12110 23478999999999887665 6899999
Q ss_pred ecCCCCC
Q 004298 135 FFPPAPR 141 (763)
Q Consensus 135 ~wd~~~~ 141 (763)
.||+..+
T Consensus 338 qYDISDP 344 (461)
T PF05694_consen 338 QYDISDP 344 (461)
T ss_dssp EEE-SST
T ss_pred EEecCCC
Confidence 9998653
Done!