Query 004298
Match_columns 763
No_of_seqs 434 out of 2602
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 99.9 1.7E-22 5.9E-27 214.7 23.7 205 23-243 15-250 (304)
2 4gqb_B Methylosome protein 50; 99.9 4.4E-22 1.5E-26 216.0 25.5 217 23-268 84-335 (344)
3 1vyh_C Platelet-activating fac 99.9 6.6E-22 2.3E-26 219.7 23.3 205 22-243 109-360 (410)
4 3fm0_A Protein CIAO1; WDR39,SG 99.9 4.8E-21 1.7E-25 207.4 25.7 218 21-265 61-336 (345)
5 3ow8_A WD repeat-containing pr 99.9 4.1E-21 1.4E-25 206.0 24.0 187 22-243 123-312 (321)
6 3fm0_A Protein CIAO1; WDR39,SG 99.9 4.8E-21 1.7E-25 207.4 24.6 206 23-243 18-274 (345)
7 2ynn_A Coatomer subunit beta'; 99.9 1.1E-20 3.6E-25 200.8 26.2 205 23-241 57-291 (304)
8 2pbi_B Guanine nucleotide-bind 99.9 8E-21 2.7E-25 206.6 25.7 205 22-243 65-348 (354)
9 1vyh_C Platelet-activating fac 99.9 7.1E-21 2.4E-25 211.3 25.2 207 22-243 151-402 (410)
10 3frx_A Guanine nucleotide-bind 99.9 1.3E-20 4.4E-25 201.7 25.8 205 22-242 18-258 (319)
11 2pm7_B Protein transport prote 99.9 1E-20 3.5E-25 200.3 23.9 217 22-263 10-284 (297)
12 2hes_X YDR267CP; beta-propelle 99.9 7.7E-21 2.6E-25 204.5 23.2 218 21-263 58-327 (330)
13 2xzm_R RACK1; ribosome, transl 99.9 1.9E-20 6.3E-25 202.4 25.7 191 22-243 22-235 (343)
14 3ow8_A WD repeat-containing pr 99.9 4E-20 1.4E-24 198.3 26.1 208 19-243 30-270 (321)
15 1got_B GT-beta; complex (GTP-b 99.9 3.3E-20 1.1E-24 200.3 25.5 204 22-243 56-292 (340)
16 4g56_B MGC81050 protein; prote 99.9 3.6E-20 1.2E-24 201.7 25.8 214 23-264 96-343 (357)
17 1got_B GT-beta; complex (GTP-b 99.9 6.4E-20 2.2E-24 198.0 26.2 204 22-243 98-334 (340)
18 3bg1_A Protein SEC13 homolog; 99.9 2.4E-20 8.2E-25 199.3 22.0 209 22-243 14-284 (316)
19 4ery_A WD repeat-containing pr 99.9 1.3E-19 4.3E-24 192.5 27.1 188 22-243 24-214 (312)
20 4ery_A WD repeat-containing pr 99.9 1.3E-19 4.4E-24 192.4 27.0 216 22-263 66-311 (312)
21 3iz6_a 40S ribosomal protein R 99.8 6.2E-20 2.1E-24 201.4 25.0 215 21-263 66-374 (380)
22 3jrp_A Fusion protein of prote 99.8 8.8E-20 3E-24 197.5 25.0 217 23-264 13-287 (379)
23 3frx_A Guanine nucleotide-bind 99.8 1.2E-19 3.9E-24 194.3 25.1 213 22-264 66-317 (319)
24 2xzm_R RACK1; ribosome, transl 99.8 1.5E-19 5.3E-24 195.2 24.9 211 22-264 77-340 (343)
25 1erj_A Transcriptional repress 99.8 8.8E-20 3E-24 201.1 23.1 203 22-243 65-332 (393)
26 3f3f_A Nucleoporin SEH1; struc 99.8 5.9E-19 2E-23 187.6 25.9 113 22-140 12-143 (351)
27 1nr0_A Actin interacting prote 99.8 5.8E-19 2E-23 206.3 26.8 217 22-265 60-356 (611)
28 3dwl_C Actin-related protein 2 99.8 5.6E-20 1.9E-24 200.2 16.3 206 23-243 13-273 (377)
29 1nr0_A Actin interacting prote 99.8 6.7E-19 2.3E-23 205.8 26.1 164 22-193 148-355 (611)
30 4gqb_B Methylosome protein 50; 99.8 8.6E-20 3E-24 197.9 17.2 203 22-243 31-280 (344)
31 2ymu_A WD-40 repeat protein; u 99.8 5.1E-19 1.7E-23 204.0 24.6 204 21-243 344-571 (577)
32 2hes_X YDR267CP; beta-propelle 99.8 7.9E-19 2.7E-23 188.7 24.3 187 22-243 15-221 (330)
33 1gxr_A ESG1, transducin-like e 99.8 1.3E-18 4.4E-23 185.1 25.2 205 21-243 97-328 (337)
34 3k26_A Polycomb protein EED; W 99.8 8E-19 2.7E-23 189.0 23.6 213 21-243 69-357 (366)
35 1erj_A Transcriptional repress 99.8 1.9E-18 6.5E-23 190.4 25.6 197 22-263 166-388 (393)
36 3zwl_B Eukaryotic translation 99.8 2.9E-18 9.8E-23 184.6 26.4 200 22-243 33-240 (369)
37 1k8k_C P40, ARP2/3 complex 41 99.8 1.3E-18 4.4E-23 188.3 23.3 214 23-264 10-274 (372)
38 3mmy_A MRNA export factor; mRN 99.8 3.4E-18 1.1E-22 184.0 26.3 215 21-244 39-338 (368)
39 1gxr_A ESG1, transducin-like e 99.8 1.8E-18 6.2E-23 183.9 23.3 204 22-243 52-287 (337)
40 2ymu_A WD-40 repeat protein; u 99.8 2.1E-18 7.2E-23 198.9 25.5 204 21-243 303-530 (577)
41 3vl1_A 26S proteasome regulato 99.8 8.7E-19 3E-23 193.5 21.1 207 21-243 139-410 (420)
42 4aow_A Guanine nucleotide-bind 99.8 3.1E-18 1.1E-22 182.8 24.7 224 22-265 39-338 (340)
43 3mkq_A Coatomer beta'-subunit; 99.8 9.2E-19 3.1E-23 210.5 23.0 206 22-243 14-250 (814)
44 4g56_B MGC81050 protein; prote 99.8 2E-19 6.8E-24 195.8 15.2 204 22-243 43-292 (357)
45 3dm0_A Maltose-binding peripla 99.8 2E-18 7E-23 204.7 25.1 193 21-243 382-583 (694)
46 3ei3_B DNA damage-binding prot 99.8 3E-18 1E-22 187.2 24.3 213 21-264 118-382 (383)
47 4ggc_A P55CDC, cell division c 99.8 6.4E-18 2.2E-22 178.5 25.8 212 24-262 28-313 (318)
48 4h5i_A Guanine nucleotide-exch 99.8 7.1E-19 2.4E-23 192.1 18.6 199 22-265 134-344 (365)
49 4e54_B DNA damage-binding prot 99.8 1.4E-18 4.6E-23 194.2 20.3 190 22-243 120-318 (435)
50 4e54_B DNA damage-binding prot 99.8 2.4E-18 8.2E-23 192.2 22.3 157 22-194 165-328 (435)
51 3dm0_A Maltose-binding peripla 99.8 3.5E-18 1.2E-22 202.6 23.7 212 22-262 431-691 (694)
52 2j04_A TAU60, YPL007P, hypothe 99.8 2.2E-18 7.4E-23 194.3 20.6 184 22-243 86-289 (588)
53 3jro_A Fusion protein of prote 99.8 2.1E-18 7.2E-23 206.6 21.3 209 22-243 10-276 (753)
54 2aq5_A Coronin-1A; WD40 repeat 99.8 7.2E-18 2.5E-22 185.8 23.4 187 22-241 82-287 (402)
55 3vl1_A 26S proteasome regulato 99.8 1.4E-18 4.6E-23 191.9 17.5 204 23-243 58-313 (420)
56 4aez_A CDC20, WD repeat-contai 99.8 2.3E-17 8E-22 181.9 26.2 214 22-265 135-381 (401)
57 1yfq_A Cell cycle arrest prote 99.8 1.7E-17 5.8E-22 177.4 24.0 114 19-140 9-131 (342)
58 3zwl_B Eukaryotic translation 99.8 1.7E-17 5.8E-22 178.5 23.9 219 22-268 75-350 (369)
59 4a11_B DNA excision repair pro 99.8 3.1E-17 1.1E-21 179.3 26.3 226 20-265 98-366 (408)
60 3k26_A Polycomb protein EED; W 99.8 9.5E-18 3.3E-22 180.5 21.6 155 22-193 19-192 (366)
61 3sfz_A APAF-1, apoptotic pepti 99.8 1.2E-17 4.3E-22 210.5 26.2 156 21-193 615-774 (1249)
62 4gq1_A NUP37; propeller, trans 99.8 5.6E-18 1.9E-22 186.8 19.7 206 30-242 98-380 (393)
63 2pm9_A Protein WEB1, protein t 99.8 5.5E-18 1.9E-22 186.4 19.3 206 23-243 14-285 (416)
64 3ei3_B DNA damage-binding prot 99.8 2E-17 7E-22 180.5 23.7 189 21-243 73-273 (383)
65 3dw8_B Serine/threonine-protei 99.8 2.4E-17 8.1E-22 183.3 24.4 213 21-242 177-437 (447)
66 2pbi_B Guanine nucleotide-bind 99.8 1.2E-17 4.1E-22 181.5 21.1 157 22-193 155-315 (354)
67 1r5m_A SIR4-interacting protei 99.8 2.5E-17 8.6E-22 180.8 23.8 214 22-265 109-362 (425)
68 3dw8_B Serine/threonine-protei 99.8 7.9E-18 2.7E-22 187.2 19.2 157 22-194 29-259 (447)
69 3i2n_A WD repeat-containing pr 99.8 4.3E-17 1.5E-21 175.0 22.5 194 22-243 19-234 (357)
70 2oaj_A Protein SNI1; WD40 repe 99.8 6.6E-17 2.3E-21 197.1 26.3 204 21-243 17-233 (902)
71 2xyi_A Probable histone-bindin 99.7 2.9E-17 1E-21 183.2 20.8 221 22-269 129-415 (430)
72 3mkq_A Coatomer beta'-subunit; 99.7 6.1E-17 2.1E-21 194.6 24.9 207 22-242 56-292 (814)
73 4gga_A P55CDC, cell division c 99.7 3.2E-16 1.1E-20 174.0 28.6 214 22-263 148-394 (420)
74 1r5m_A SIR4-interacting protei 99.7 7.1E-17 2.4E-21 177.2 22.8 210 23-243 47-310 (425)
75 3i2n_A WD repeat-containing pr 99.7 4.1E-17 1.4E-21 175.1 20.0 212 23-264 67-353 (357)
76 1k8k_C P40, ARP2/3 complex 41 99.7 1.5E-16 5.1E-21 172.0 24.4 164 22-193 53-233 (372)
77 3gre_A Serine/threonine-protei 99.7 8.3E-17 2.8E-21 179.0 22.9 206 22-243 112-350 (437)
78 1yfq_A Cell cycle arrest prote 99.7 5.8E-17 2E-21 173.2 20.7 153 22-193 57-225 (342)
79 4gga_A P55CDC, cell division c 99.7 9.2E-17 3.1E-21 178.4 22.7 197 24-240 108-339 (420)
80 2j04_B YDR362CP, TAU91; beta p 99.7 1.4E-17 4.7E-22 190.6 16.3 188 22-243 208-419 (524)
81 3lrv_A PRE-mRNA-splicing facto 99.7 9.5E-17 3.2E-21 173.1 21.9 156 22-192 126-291 (343)
82 2j04_A TAU60, YPL007P, hypothe 99.7 1.1E-17 3.6E-22 188.8 14.3 156 16-193 10-211 (588)
83 2vdu_B TRNA (guanine-N(7)-)-me 99.7 6.8E-17 2.3E-21 181.1 20.9 205 22-243 103-330 (450)
84 1sq9_A Antiviral protein SKI8; 99.7 5.7E-17 1.9E-21 177.3 19.6 220 22-264 122-395 (397)
85 1sq9_A Antiviral protein SKI8; 99.7 1.3E-16 4.4E-21 174.5 21.6 212 21-243 16-313 (397)
86 2pm9_A Protein WEB1, protein t 99.7 6.4E-17 2.2E-21 177.8 19.1 198 22-265 114-338 (416)
87 2j04_B YDR362CP, TAU91; beta p 99.7 2.3E-17 7.9E-22 188.7 15.7 153 22-192 267-427 (524)
88 3odt_A Protein DOA1; ubiquitin 99.7 1.5E-16 5.2E-21 167.3 20.7 199 22-243 19-246 (313)
89 4a11_B DNA excision repair pro 99.7 3E-16 1E-20 171.4 23.8 202 21-243 43-267 (408)
90 2aq5_A Coronin-1A; WD40 repeat 99.7 7.9E-17 2.7E-21 177.5 19.0 185 22-237 132-329 (402)
91 4aez_A CDC20, WD repeat-contai 99.7 3.4E-16 1.2E-20 172.5 23.2 197 24-240 96-322 (401)
92 3iz6_a 40S ribosomal protein R 99.7 1.1E-16 3.8E-21 175.4 18.8 158 21-193 205-375 (380)
93 2pm7_B Protein transport prote 99.7 1.7E-16 5.7E-21 167.8 19.1 159 22-193 54-238 (297)
94 1pgu_A Actin interacting prote 99.7 2.5E-16 8.6E-21 182.2 21.3 187 19-243 16-229 (615)
95 3v7d_B Cell division control p 99.7 7.1E-16 2.4E-20 172.9 24.1 189 24-243 125-332 (464)
96 3dwl_C Actin-related protein 2 99.7 6.2E-17 2.1E-21 176.0 14.4 166 21-194 55-237 (377)
97 3odt_A Protein DOA1; ubiquitin 99.7 8.2E-16 2.8E-20 161.7 22.6 210 22-267 60-299 (313)
98 2w18_A PALB2, fancn, partner a 99.7 4.1E-16 1.4E-20 165.7 20.0 193 23-243 113-348 (356)
99 3sfz_A APAF-1, apoptotic pepti 99.7 7.2E-16 2.4E-20 194.5 25.5 114 21-140 657-774 (1249)
100 3v7d_B Cell division control p 99.7 1E-15 3.6E-20 171.5 24.1 200 21-240 162-410 (464)
101 3bg1_A Protein SEC13 homolog; 99.7 2.4E-16 8.1E-21 168.2 17.5 159 22-193 58-247 (316)
102 3gre_A Serine/threonine-protei 99.7 3.3E-16 1.1E-20 174.1 19.3 198 21-264 63-292 (437)
103 4h5i_A Guanine nucleotide-exch 99.7 1.9E-16 6.5E-21 172.8 16.9 163 9-191 168-341 (365)
104 3lrv_A PRE-mRNA-splicing facto 99.7 7.4E-16 2.5E-20 166.1 19.7 184 23-241 78-280 (343)
105 2vdu_B TRNA (guanine-N(7)-)-me 99.7 1.5E-15 5.3E-20 170.1 22.5 196 24-265 7-272 (450)
106 1p22_A F-BOX/WD-repeat protein 99.7 3.9E-15 1.3E-19 165.9 23.5 198 21-243 133-356 (435)
107 2ovr_B FBW7, F-BOX/WD repeat p 99.7 7.3E-15 2.5E-19 164.0 23.9 210 22-264 200-442 (445)
108 3jrp_A Fusion protein of prote 99.6 3.7E-15 1.3E-19 160.9 19.7 157 22-193 56-240 (379)
109 1pgu_A Actin interacting prote 99.6 5.4E-15 1.8E-19 171.0 21.2 192 21-243 63-274 (615)
110 2oaj_A Protein SNI1; WD40 repe 99.6 4.5E-15 1.5E-19 181.0 21.1 162 22-193 59-242 (902)
111 3f3f_A Nucleoporin SEH1; struc 99.6 1.9E-15 6.5E-20 160.3 15.7 113 22-140 58-249 (351)
112 2w18_A PALB2, fancn, partner a 99.6 3.3E-15 1.1E-19 158.8 15.5 151 23-191 180-355 (356)
113 3vu4_A KMHSV2; beta-propeller 99.6 1E-14 3.4E-19 158.4 19.5 203 24-243 61-327 (355)
114 3vu4_A KMHSV2; beta-propeller 99.6 1.6E-14 5.6E-19 156.7 19.9 152 34-191 148-334 (355)
115 1p22_A F-BOX/WD-repeat protein 99.6 2.4E-14 8.4E-19 159.4 21.0 205 22-265 174-415 (435)
116 2ovr_B FBW7, F-BOX/WD repeat p 99.6 5.9E-14 2E-18 156.6 23.8 196 21-243 159-382 (445)
117 1l0q_A Surface layer protein; 99.6 9.2E-14 3.1E-18 151.6 24.7 182 23-241 33-219 (391)
118 4aow_A Guanine nucleotide-bind 99.6 4.8E-14 1.6E-18 150.1 20.3 154 21-191 171-335 (340)
119 3jro_A Fusion protein of prote 99.6 2.1E-14 7.4E-19 171.8 18.3 158 21-193 53-238 (753)
120 2xyi_A Probable histone-bindin 99.6 2.6E-14 9E-19 159.2 16.9 158 21-193 231-410 (430)
121 3bws_A Protein LP49; two-domai 99.6 1.2E-13 4.3E-18 152.8 21.4 203 22-242 123-365 (433)
122 1l0q_A Surface layer protein; 99.6 3.3E-13 1.1E-17 147.2 24.4 181 23-241 75-263 (391)
123 4gq1_A NUP37; propeller, trans 99.6 1.1E-13 3.7E-18 152.4 20.1 167 21-193 136-348 (393)
124 4ggc_A P55CDC, cell division c 99.6 2.6E-13 8.9E-18 142.9 22.3 184 22-221 68-312 (318)
125 2hqs_A Protein TOLB; TOLB, PAL 99.5 4E-13 1.4E-17 149.1 23.7 185 22-243 179-375 (415)
126 3mmy_A MRNA export factor; mRN 99.5 9.3E-14 3.2E-18 149.1 16.5 165 22-194 87-305 (368)
127 2oit_A Nucleoporin 214KDA; NH2 99.5 7.1E-14 2.4E-18 156.2 14.5 190 23-241 38-260 (434)
128 2oit_A Nucleoporin 214KDA; NH2 99.5 1.9E-13 6.5E-18 152.7 15.5 114 20-139 91-222 (434)
129 3bws_A Protein LP49; two-domai 99.5 1.6E-12 5.3E-17 143.9 22.7 193 22-263 212-431 (433)
130 2ojh_A Uncharacterized protein 99.4 1.1E-11 3.7E-16 128.1 18.2 184 22-242 42-237 (297)
131 2hqs_A Protein TOLB; TOLB, PAL 99.4 1.8E-11 6E-16 135.8 20.4 175 33-242 143-331 (415)
132 1ri6_A Putative isomerase YBHE 99.4 7E-11 2.4E-15 125.4 23.5 190 23-241 85-296 (343)
133 2ojh_A Uncharacterized protein 99.4 9.1E-12 3.1E-16 128.7 16.0 192 22-243 85-293 (297)
134 3vgz_A Uncharacterized protein 99.3 9E-11 3.1E-15 125.4 22.5 183 24-243 143-335 (353)
135 1ri6_A Putative isomerase YBHE 99.3 9.9E-11 3.4E-15 124.3 19.9 196 23-241 39-250 (343)
136 1nir_A Nitrite reductase; hemo 99.3 2.3E-10 7.9E-15 131.4 24.3 201 24-240 181-439 (543)
137 2ecf_A Dipeptidyl peptidase IV 99.3 2E-11 7E-16 145.1 16.1 111 22-140 37-181 (741)
138 1nir_A Nitrite reductase; hemo 99.3 8.5E-11 2.9E-15 135.0 19.8 199 28-265 144-356 (543)
139 3vgz_A Uncharacterized protein 99.3 2.1E-10 7.3E-15 122.5 21.5 186 23-241 90-291 (353)
140 3hfq_A Uncharacterized protein 99.3 3.8E-10 1.3E-14 120.9 22.5 193 22-242 86-306 (347)
141 3hfq_A Uncharacterized protein 99.3 2.2E-10 7.4E-15 122.9 20.4 199 24-242 42-260 (347)
142 3u4y_A Uncharacterized protein 99.2 2.4E-10 8.2E-15 121.3 20.1 185 24-241 43-240 (331)
143 1pby_B Quinohemoprotein amine 99.2 4.1E-10 1.4E-14 119.1 20.4 107 24-139 36-162 (337)
144 2ecf_A Dipeptidyl peptidase IV 99.2 7.9E-11 2.7E-15 140.0 16.1 97 24-122 111-227 (741)
145 2z3z_A Dipeptidyl aminopeptida 99.2 9.9E-11 3.4E-15 138.4 16.6 195 22-242 121-376 (706)
146 3u4y_A Uncharacterized protein 99.2 9.6E-10 3.3E-14 116.6 22.5 207 24-265 86-305 (331)
147 1xfd_A DIP, dipeptidyl aminope 99.2 3.8E-11 1.3E-15 142.3 12.5 110 22-140 17-143 (723)
148 1xfd_A DIP, dipeptidyl aminope 99.2 4.1E-10 1.4E-14 133.4 19.1 99 23-122 62-191 (723)
149 1k32_A Tricorn protease; prote 99.1 2E-09 6.8E-14 133.4 24.4 100 22-122 379-490 (1045)
150 2z3z_A Dipeptidyl aminopeptida 99.1 6.8E-10 2.3E-14 131.2 18.9 202 24-265 183-436 (706)
151 3o4h_A Acylamino-acid-releasin 99.1 4.6E-10 1.6E-14 129.7 16.5 178 24-242 112-302 (582)
152 1k32_A Tricorn protease; prote 99.1 6E-10 2.1E-14 138.1 15.7 183 23-243 297-493 (1045)
153 1jmx_B Amine dehydrogenase; ox 99.1 1.1E-09 3.9E-14 116.5 15.7 115 26-140 4-134 (349)
154 1z68_A Fibroblast activation p 99.1 4.8E-10 1.6E-14 132.9 13.0 96 24-122 62-187 (719)
155 1z68_A Fibroblast activation p 99.0 4.5E-10 1.5E-14 133.2 11.7 107 25-140 19-139 (719)
156 4a5s_A Dipeptidyl peptidase 4 99.0 3.6E-09 1.2E-13 126.1 19.0 108 23-140 18-141 (740)
157 3scy_A Hypothetical bacterial 99.0 1.8E-08 6E-13 108.6 21.8 196 24-242 52-279 (361)
158 1jof_A Carboxy-CIS,CIS-muconat 99.0 4.1E-09 1.4E-13 114.2 15.0 204 23-242 41-275 (365)
159 1jof_A Carboxy-CIS,CIS-muconat 99.0 1.5E-08 5.1E-13 109.8 18.6 111 24-139 85-223 (365)
160 3scy_A Hypothetical bacterial 98.9 1.8E-08 6.3E-13 108.4 18.3 157 23-192 156-336 (361)
161 1pby_B Quinohemoprotein amine 98.9 1.6E-08 5.4E-13 106.8 17.2 77 23-101 83-172 (337)
162 3azo_A Aminopeptidase; POP fam 98.9 1.5E-08 5.1E-13 118.7 17.7 159 23-192 131-322 (662)
163 3pe7_A Oligogalacturonate lyas 98.9 1.2E-08 4.1E-13 110.7 15.4 93 27-119 41-140 (388)
164 3o4h_A Acylamino-acid-releasin 98.9 7.5E-09 2.6E-13 119.5 14.4 174 23-238 23-211 (582)
165 4a5s_A Dipeptidyl peptidase 4 98.8 2.5E-08 8.5E-13 118.9 16.4 97 25-122 65-189 (740)
166 1q7f_A NHL, brain tumor CG1071 98.8 3.8E-07 1.3E-11 94.5 20.9 184 23-240 78-268 (286)
167 2xdw_A Prolyl endopeptidase; a 98.7 1.8E-07 6E-12 110.9 18.9 116 23-139 126-267 (710)
168 3azo_A Aminopeptidase; POP fam 98.7 5.1E-08 1.7E-12 114.1 13.7 157 26-192 81-271 (662)
169 1q7f_A NHL, brain tumor CG1071 98.7 6.8E-07 2.3E-11 92.6 20.6 155 22-193 30-194 (286)
170 3fvz_A Peptidyl-glycine alpha- 98.7 3.2E-06 1.1E-10 90.0 25.4 162 22-192 24-226 (329)
171 2dg1_A DRP35, lactonase; beta 98.7 1.1E-06 3.7E-11 93.2 21.3 100 23-122 46-153 (333)
172 2gop_A Trilobed protease; beta 98.7 1.5E-07 5.1E-12 100.3 14.4 96 23-122 60-188 (347)
173 1xip_A Nucleoporin NUP159; bet 98.6 2.4E-07 8.3E-12 100.8 14.4 180 23-241 39-233 (388)
174 3c5m_A Oligogalacturonate lyas 98.6 9.3E-08 3.2E-12 103.6 10.8 81 24-104 38-123 (396)
175 3e5z_A Putative gluconolactona 98.6 1.2E-06 4.2E-11 91.3 18.5 199 22-269 69-291 (296)
176 1jmx_B Amine dehydrogenase; ox 98.6 1.8E-07 6E-12 99.3 12.1 75 24-101 94-184 (349)
177 3pe7_A Oligogalacturonate lyas 98.6 8.8E-07 3E-11 95.8 17.3 199 28-241 131-370 (388)
178 3no2_A Uncharacterized protein 98.6 1.1E-06 3.7E-11 91.5 17.0 151 33-199 5-161 (276)
179 2bkl_A Prolyl endopeptidase; m 98.5 6.7E-07 2.3E-11 105.6 16.1 100 23-122 122-245 (695)
180 1qks_A Cytochrome CD1 nitrite 98.5 3.1E-06 1.1E-10 97.2 21.1 196 31-265 165-374 (567)
181 3e5z_A Putative gluconolactona 98.5 1.8E-06 6.1E-11 90.1 17.2 96 24-120 30-131 (296)
182 2dg1_A DRP35, lactonase; beta 98.5 7.2E-07 2.5E-11 94.6 13.8 110 23-140 7-121 (333)
183 1qks_A Cytochrome CD1 nitrite 98.5 1.4E-05 4.7E-10 91.8 25.1 79 22-100 197-283 (567)
184 3no2_A Uncharacterized protein 98.5 7.5E-06 2.6E-10 85.1 21.0 162 7-192 24-194 (276)
185 1rwi_B Serine/threonine-protei 98.5 4.7E-06 1.6E-10 85.1 18.2 196 23-265 68-265 (270)
186 3fvz_A Peptidyl-glycine alpha- 98.4 3.7E-06 1.3E-10 89.5 16.6 160 23-191 144-320 (329)
187 3c5m_A Oligogalacturonate lyas 98.4 7.2E-07 2.5E-11 96.4 10.5 111 28-140 148-273 (396)
188 2oiz_A Aromatic amine dehydrog 98.4 1.2E-05 4.2E-10 86.8 20.0 75 26-100 54-149 (361)
189 1xip_A Nucleoporin NUP159; bet 98.4 3.9E-06 1.3E-10 91.3 15.9 103 19-139 86-190 (388)
190 2gop_A Trilobed protease; beta 98.3 1.3E-05 4.5E-10 85.1 18.5 147 24-192 106-290 (347)
191 1rwi_B Serine/threonine-protei 98.3 1.7E-05 5.9E-10 80.8 18.6 152 23-193 25-180 (270)
192 2bkl_A Prolyl endopeptidase; m 98.3 8.5E-06 2.9E-10 96.1 17.9 189 25-242 171-383 (695)
193 1yr2_A Prolyl oligopeptidase; 98.3 6.7E-06 2.3E-10 97.8 16.5 116 23-140 164-303 (741)
194 3g4e_A Regucalcin; six bladed 98.3 4.4E-05 1.5E-09 79.7 20.3 190 21-243 53-263 (297)
195 3dsm_A Uncharacterized protein 98.2 4.3E-05 1.5E-09 81.2 18.8 186 19-240 41-243 (328)
196 2xdw_A Prolyl endopeptidase; a 98.2 1.2E-05 4.2E-10 94.9 15.9 91 31-122 81-189 (710)
197 3dsm_A Uncharacterized protein 98.1 8E-05 2.7E-09 79.1 18.1 190 22-240 84-285 (328)
198 2ghs_A AGR_C_1268P; regucalcin 98.1 0.00025 8.6E-09 75.1 21.4 188 21-243 89-293 (326)
199 2oiz_A Aromatic amine dehydrog 98.1 1.8E-05 6.3E-10 85.4 12.1 89 26-116 258-360 (361)
200 3iuj_A Prolyl endopeptidase; h 98.0 4E-05 1.4E-09 90.4 15.9 115 23-140 130-268 (693)
201 2z2n_A Virginiamycin B lyase; 98.0 0.00037 1.3E-08 71.6 21.3 151 22-191 15-169 (299)
202 3dr2_A Exported gluconolactona 98.0 7.7E-05 2.6E-09 78.2 16.2 190 22-242 86-297 (305)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 98.0 0.00015 5E-09 75.6 17.5 199 22-264 71-299 (314)
204 2z2n_A Virginiamycin B lyase; 98.0 0.00077 2.6E-08 69.2 22.7 152 22-191 57-211 (299)
205 3g4e_A Regucalcin; six bladed 97.9 0.00053 1.8E-08 71.4 19.3 96 24-121 15-115 (297)
206 3hrp_A Uncharacterized protein 97.9 0.00019 6.6E-09 78.8 16.5 157 23-193 132-298 (409)
207 1yr2_A Prolyl oligopeptidase; 97.9 7.1E-05 2.4E-09 88.9 13.8 91 30-122 115-226 (741)
208 2mad_H Methylamine dehydrogena 97.8 0.0014 4.7E-08 71.0 22.4 75 26-101 70-166 (373)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 97.7 0.00052 1.8E-08 71.3 16.4 111 23-139 118-255 (314)
210 3c75_H MADH, methylamine dehyd 97.7 0.00084 2.9E-08 73.8 18.4 76 26-101 122-218 (426)
211 3dr2_A Exported gluconolactona 97.7 0.00077 2.6E-08 70.4 17.0 96 24-120 47-147 (305)
212 1fwx_A Nitrous oxide reductase 97.7 0.00014 4.7E-09 82.4 11.6 200 21-243 133-409 (595)
213 2iwa_A Glutamine cyclotransfer 97.7 0.0067 2.3E-07 62.1 22.8 206 24-264 23-237 (266)
214 2qc5_A Streptogramin B lactona 97.7 0.0037 1.3E-07 63.9 21.3 150 23-191 21-174 (300)
215 3hrp_A Uncharacterized protein 97.7 0.0019 6.4E-08 70.9 19.9 158 27-191 176-352 (409)
216 2ghs_A AGR_C_1268P; regucalcin 97.7 0.00098 3.3E-08 70.5 17.1 96 24-121 51-151 (326)
217 2qc5_A Streptogramin B lactona 97.6 0.0057 1.9E-07 62.5 22.0 152 22-191 62-216 (300)
218 2hz6_A Endoplasmic reticulum t 97.6 1.8E-05 6.2E-10 85.8 2.6 138 32-192 8-148 (369)
219 2qe8_A Uncharacterized protein 97.5 0.0021 7.2E-08 68.4 17.2 115 23-140 18-154 (343)
220 3sjl_D Methylamine dehydrogena 97.4 0.0098 3.4E-07 64.3 20.9 75 27-101 83-178 (386)
221 3iuj_A Prolyl endopeptidase; h 97.4 0.0025 8.5E-08 74.9 17.6 111 25-140 178-314 (693)
222 2qe8_A Uncharacterized protein 97.4 0.0037 1.3E-07 66.5 17.3 100 23-122 68-213 (343)
223 3nol_A Glutamine cyclotransfer 97.4 0.013 4.4E-07 59.5 19.6 193 24-241 45-244 (262)
224 3sjl_D Methylamine dehydrogena 97.2 0.00086 2.9E-08 72.6 9.9 109 27-140 38-169 (386)
225 2ece_A 462AA long hypothetical 97.2 0.0078 2.7E-07 65.9 17.3 202 31-243 93-342 (462)
226 3c75_H MADH, methylamine dehyd 97.2 0.0038 1.3E-07 68.6 14.8 105 31-140 82-209 (426)
227 3qqz_A Putative uncharacterize 97.2 0.052 1.8E-06 55.1 22.1 204 22-242 27-243 (255)
228 2mad_H Methylamine dehydrogena 97.1 0.0051 1.7E-07 66.5 14.8 107 28-140 27-156 (373)
229 2ece_A 462AA long hypothetical 97.1 0.01 3.5E-07 65.0 17.1 98 24-122 140-271 (462)
230 3mbr_X Glutamine cyclotransfer 96.9 0.17 5.7E-06 50.8 22.0 204 12-241 13-223 (243)
231 2p4o_A Hypothetical protein; p 96.8 0.56 1.9E-05 48.4 27.4 76 22-97 32-109 (306)
232 2hz6_A Endoplasmic reticulum t 96.8 8.3E-05 2.8E-09 80.5 -2.7 106 24-140 40-149 (369)
233 3hxj_A Pyrrolo-quinoline quino 96.7 0.026 9E-07 58.6 15.3 103 24-138 139-242 (330)
234 3nok_A Glutaminyl cyclase; bet 96.6 0.053 1.8E-06 55.0 16.2 204 12-241 47-254 (268)
235 2xe4_A Oligopeptidase B; hydro 96.5 0.0066 2.2E-07 72.0 10.0 115 23-140 175-304 (751)
236 1mda_H Methylamine dehydrogena 96.4 0.0083 2.8E-07 64.6 9.2 85 27-112 269-365 (368)
237 1yiq_A Quinohemoprotein alcoho 96.0 0.081 2.8E-06 61.9 16.1 74 26-99 239-345 (689)
238 1yiq_A Quinohemoprotein alcoho 95.9 0.013 4.3E-07 68.9 8.4 76 42-117 454-531 (689)
239 1mda_H Methylamine dehydrogena 95.9 0.02 6.9E-07 61.6 9.2 92 44-140 47-158 (368)
240 2xe4_A Oligopeptidase B; hydro 95.8 0.089 3E-06 62.3 15.2 97 25-121 224-337 (751)
241 1kb0_A Quinohemoprotein alcoho 95.8 0.015 5.2E-07 68.0 8.4 76 43-118 457-534 (677)
242 1npe_A Nidogen, entactin; glyc 95.6 1.6 5.3E-05 43.7 21.7 95 24-118 38-136 (267)
243 1fwx_A Nitrous oxide reductase 95.5 0.017 5.7E-07 65.5 7.2 99 24-122 279-406 (595)
244 3hxj_A Pyrrolo-quinoline quino 95.5 0.54 1.8E-05 48.4 18.4 86 33-120 107-193 (330)
245 1npe_A Nidogen, entactin; glyc 95.0 0.65 2.2E-05 46.6 16.7 110 23-139 80-197 (267)
246 3tc9_A Hypothetical hydrolase; 95.0 1.2 4.2E-05 48.5 20.0 111 23-139 180-300 (430)
247 1kb0_A Quinohemoprotein alcoho 94.9 0.13 4.3E-06 60.2 12.3 107 27-140 318-507 (677)
248 3q7m_A Lipoprotein YFGL, BAMB; 94.8 0.88 3E-05 48.1 17.9 68 32-101 102-171 (376)
249 1kv9_A Type II quinohemoprotei 94.8 0.42 1.5E-05 55.5 16.4 75 26-100 234-341 (668)
250 2fp8_A Strictosidine synthase; 94.4 0.45 1.5E-05 49.4 14.2 96 24-121 21-144 (322)
251 2fp8_A Strictosidine synthase; 94.3 1.8 6E-05 44.8 18.5 110 23-140 81-216 (322)
252 3q7m_A Lipoprotein YFGL, BAMB; 93.9 0.43 1.5E-05 50.6 12.9 97 33-140 239-337 (376)
253 2iwa_A Glutamine cyclotransfer 93.5 0.39 1.3E-05 48.9 11.1 100 32-140 74-181 (266)
254 2p9w_A MAL S 1 allergenic prot 93.5 1.1 3.8E-05 46.9 14.6 98 25-122 16-155 (334)
255 3pbp_A Nucleoporin NUP82; beta 93.5 1.3 4.6E-05 47.8 15.4 94 23-118 67-194 (452)
256 3nol_A Glutamine cyclotransfer 93.1 0.58 2E-05 47.3 11.3 108 24-140 87-201 (262)
257 3tc9_A Hypothetical hydrolase; 93.1 0.52 1.8E-05 51.6 12.0 150 24-192 139-300 (430)
258 3pbp_A Nucleoporin NUP82; beta 92.8 12 0.00041 40.5 21.4 61 30-92 29-95 (452)
259 3nok_A Glutaminyl cyclase; bet 92.2 1.2 4.1E-05 45.1 12.3 102 30-140 102-210 (268)
260 2ad6_A Methanol dehydrogenase 92.2 0.23 7.8E-06 56.7 7.8 79 42-120 443-523 (571)
261 1flg_A Protein (quinoprotein e 92.1 0.23 7.8E-06 56.8 7.7 76 42-117 465-542 (582)
262 3mbr_X Glutamine cyclotransfer 92.0 1.8 6E-05 43.3 13.1 103 29-140 70-179 (243)
263 4a2l_A BT_4663, two-component 91.6 16 0.00053 42.9 23.3 196 22-242 215-426 (795)
264 2ad6_A Methanol dehydrogenase 90.3 1.2 4.2E-05 50.6 11.4 103 31-140 311-494 (571)
265 1k3i_A Galactose oxidase precu 90.2 5.3 0.00018 46.0 17.0 71 25-96 246-327 (656)
266 4a2l_A BT_4663, two-component 89.8 18 0.00062 42.4 21.6 98 22-121 406-515 (795)
267 4hw6_A Hypothetical protein, I 89.3 14 0.00049 40.0 18.7 110 23-138 183-302 (433)
268 4hw6_A Hypothetical protein, I 89.1 3.6 0.00012 44.8 13.7 107 24-139 141-258 (433)
269 1ijq_A LDL receptor, low-densi 88.9 21 0.00073 36.5 19.0 92 42-139 9-107 (316)
270 1kv9_A Type II quinohemoprotei 88.7 0.8 2.7E-05 53.2 8.4 79 42-120 437-518 (668)
271 2xbg_A YCF48-like protein; pho 88.1 4.4 0.00015 42.1 13.1 107 21-137 204-319 (327)
272 1w6s_A Methanol dehydrogenase 87.9 0.97 3.3E-05 51.7 8.3 76 42-117 452-529 (599)
273 1ijq_A LDL receptor, low-densi 87.8 15 0.0005 37.8 16.8 110 24-139 79-194 (316)
274 3v65_B Low-density lipoprotein 87.1 33 0.0011 36.3 21.1 93 41-139 94-189 (386)
275 3qqz_A Putative uncharacterize 87.0 13 0.00045 37.2 15.2 113 23-140 71-204 (255)
276 2p9w_A MAL S 1 allergenic prot 86.3 6.6 0.00023 41.0 12.7 110 24-140 65-215 (334)
277 1flg_A Protein (quinoprotein e 85.5 3.4 0.00012 46.9 11.2 103 31-140 331-516 (582)
278 1k3i_A Galactose oxidase precu 85.0 3.7 0.00012 47.3 11.3 117 24-140 188-323 (656)
279 3v9f_A Two-component system se 84.5 30 0.001 40.4 19.2 97 22-121 407-512 (781)
280 2p4o_A Hypothetical protein; p 84.1 21 0.00073 36.1 15.7 189 22-243 72-279 (306)
281 3p5b_L Low density lipoprotein 84.0 25 0.00085 37.5 16.8 112 23-140 160-277 (400)
282 3v64_C Agrin; beta propeller, 83.9 21 0.00072 37.2 15.8 97 23-119 74-174 (349)
283 2xbg_A YCF48-like protein; pho 83.8 28 0.00097 35.8 16.7 101 19-122 160-268 (327)
284 2ism_A Putative oxidoreductase 83.1 12 0.00042 39.2 13.6 96 24-121 33-152 (352)
285 3kya_A Putative phosphatase; s 82.8 11 0.00037 41.7 13.3 109 24-139 141-277 (496)
286 3amr_A 3-phytase; beta-propell 82.7 51 0.0017 34.6 19.5 172 22-204 68-276 (355)
287 1tl2_A L10, protein (tachylect 81.9 1.9 6.6E-05 42.3 6.0 94 23-121 42-152 (236)
288 3p5b_L Low density lipoprotein 81.0 39 0.0013 36.0 16.8 96 23-118 113-216 (400)
289 3v64_C Agrin; beta propeller, 80.3 58 0.002 33.7 23.1 108 24-139 36-146 (349)
290 3a9g_A Putative uncharacterize 80.0 11 0.00037 39.7 11.7 97 24-121 31-152 (354)
291 3m0c_C LDL receptor, low-densi 79.8 59 0.002 38.2 19.0 96 23-118 425-528 (791)
292 3v65_B Low-density lipoprotein 79.8 16 0.00055 38.8 13.2 97 23-119 117-217 (386)
293 3ei3_A DNA damage-binding prot 79.5 89 0.003 38.4 21.1 98 18-115 550-663 (1158)
294 1w6s_A Methanol dehydrogenase 79.3 10 0.00035 43.1 12.0 103 31-140 318-503 (599)
295 3sov_A LRP-6, low-density lipo 75.0 39 0.0013 34.7 14.1 95 24-118 37-136 (318)
296 3v9f_A Two-component system se 74.5 1.1E+02 0.0039 35.3 19.8 96 22-121 450-556 (781)
297 3sov_A LRP-6, low-density lipo 73.6 30 0.001 35.5 12.9 110 24-139 81-196 (318)
298 3amr_A 3-phytase; beta-propell 73.0 39 0.0013 35.5 13.3 112 22-139 128-262 (355)
299 3sre_A PON1, serum paraoxonase 72.8 34 0.0012 36.0 13.0 99 22-121 165-284 (355)
300 1n7d_A LDL receptor, low-densi 72.4 5.7 0.0002 46.2 7.5 110 24-140 455-571 (699)
301 3s25_A Hypothetical 7-bladed b 72.3 18 0.00063 37.0 10.7 87 27-121 58-162 (302)
302 3m0c_C LDL receptor, low-densi 72.1 77 0.0026 37.2 17.1 111 24-140 473-589 (791)
303 3sbq_A Nitrous-oxide reductase 71.8 30 0.001 38.7 12.4 104 19-122 320-453 (638)
304 3kya_A Putative phosphatase; s 70.6 19 0.00066 39.8 10.8 110 23-138 187-339 (496)
305 2xzh_A Clathrin heavy chain 1; 65.3 1.3E+02 0.0046 31.2 21.5 79 22-103 107-199 (365)
306 1cru_A Protein (soluble quinop 65.0 40 0.0014 36.6 12.0 99 24-122 29-162 (454)
307 1n7d_A LDL receptor, low-densi 64.6 18 0.00063 41.9 9.6 97 23-119 407-511 (699)
308 2g8s_A Glucose/sorbosone dehyd 64.0 32 0.0011 35.9 10.7 97 24-121 20-147 (353)
309 1bpo_A Protein (clathrin); cla 62.3 1.8E+02 0.0061 31.6 21.9 80 22-104 106-199 (494)
310 3das_A Putative oxidoreductase 60.9 65 0.0022 33.7 12.2 98 24-121 34-157 (347)
311 2vpj_A Kelch-like protein 12; 59.2 1.1E+02 0.0037 30.3 13.5 65 32-97 112-189 (301)
312 3s25_A Hypothetical 7-bladed b 56.7 50 0.0017 33.7 10.3 88 27-121 109-201 (302)
313 2vpj_A Kelch-like protein 12; 53.7 1.5E+02 0.005 29.3 13.4 63 32-96 62-141 (301)
314 3ii7_A Kelch-like protein 7; p 53.3 45 0.0016 33.4 9.4 64 32-97 55-132 (306)
315 2xn4_A Kelch-like protein 2; s 52.0 1.1E+02 0.0039 30.2 12.2 63 32-97 108-187 (302)
316 3s94_A LRP-6, low-density lipo 51.6 2.3E+02 0.0077 32.0 15.7 94 23-117 41-140 (619)
317 4asc_A Kelch repeat and BTB do 50.5 2E+02 0.0069 28.6 14.5 67 27-96 40-130 (315)
318 2be1_A Serine/threonine-protei 48.8 20 0.00069 37.5 5.7 66 34-99 11-83 (339)
319 3zwu_A Alkaline phosphatase PH 45.8 45 0.0015 37.7 8.3 56 24-79 478-548 (592)
320 3s94_A LRP-6, low-density lipo 44.9 3.6E+02 0.012 30.3 16.0 112 23-140 85-202 (619)
321 3ii7_A Kelch-like protein 7; p 44.1 2.4E+02 0.0084 27.7 13.3 63 34-97 13-84 (306)
322 1cru_A Protein (soluble quinop 44.1 1.2E+02 0.0041 32.8 11.4 59 22-80 77-162 (454)
323 3ei3_A DNA damage-binding prot 43.2 1.3E+02 0.0044 37.0 12.6 74 23-99 515-598 (1158)
324 4a0p_A LRP6, LRP-6, low-densit 43.1 3.3E+02 0.011 30.7 15.3 96 23-118 38-137 (628)
325 4gq2_M Nucleoporin NUP120; bet 43.1 1.6E+02 0.0054 35.3 13.1 38 63-100 237-274 (950)
326 3sbq_A Nitrous-oxide reductase 42.7 22 0.00076 39.7 5.0 117 104-241 323-454 (638)
327 1xi4_A Clathrin heavy chain; a 41.6 2.9E+02 0.0099 34.7 14.8 80 21-103 105-198 (1630)
328 1tl2_A L10, protein (tachylect 41.3 57 0.002 31.9 7.1 92 25-120 91-198 (236)
329 2xn4_A Kelch-like protein 2; s 40.9 2.7E+02 0.0093 27.3 13.4 63 32-97 61-138 (302)
330 1zgk_A Kelch-like ECH-associat 39.9 1.7E+02 0.006 29.0 11.3 62 32-96 70-150 (308)
331 1xi4_A Clathrin heavy chain; a 39.2 3.9E+02 0.013 33.6 15.4 114 26-142 70-190 (1630)
332 3sre_A PON1, serum paraoxonase 39.0 55 0.0019 34.3 7.3 91 24-117 223-327 (355)
333 2wg3_C Hedgehog-interacting pr 37.8 2.9E+02 0.01 29.8 13.2 99 24-122 16-157 (463)
334 2ism_A Putative oxidoreductase 37.0 1.2E+02 0.004 31.4 9.6 97 24-121 204-332 (352)
335 4a0p_A LRP6, LRP-6, low-densit 36.9 3.7E+02 0.013 30.2 14.5 111 23-139 390-507 (628)
336 2uvk_A YJHT; unknown function, 36.4 2.4E+02 0.0082 28.5 12.0 50 32-82 65-128 (357)
337 4gq2_M Nucleoporin NUP120; bet 35.9 1.1E+02 0.0037 36.7 10.1 38 21-58 235-273 (950)
338 1zgk_A Kelch-like ECH-associat 35.8 1.1E+02 0.0036 30.7 8.8 62 32-96 121-197 (308)
339 2woz_A Kelch repeat and BTB do 34.4 3.5E+02 0.012 26.7 13.3 67 28-97 52-141 (318)
340 2woz_A Kelch repeat and BTB do 32.9 2.7E+02 0.0092 27.6 11.5 64 32-96 109-188 (318)
341 4fhn_B Nucleoporin NUP120; pro 32.4 1.3E+02 0.0044 36.9 10.2 38 63-100 239-276 (1139)
342 3f7f_A Nucleoporin NUP120; nuc 29.7 1.5E+02 0.005 34.2 9.2 36 64-101 224-259 (729)
343 4a9v_A PHOX; hydrolase, beta-p 29.0 1.6E+02 0.0056 32.9 9.2 57 24-80 478-549 (592)
344 2g8s_A Glucose/sorbosone dehyd 28.4 1.1E+02 0.0039 31.5 7.7 96 23-120 67-214 (353)
345 3ott_A Two-component system se 27.5 7.2E+02 0.025 28.2 15.4 95 23-120 147-248 (758)
346 2zwa_A Leucine carboxyl methyl 26.5 2.2E+02 0.0075 32.6 10.3 90 32-122 451-558 (695)
347 3a9g_A Putative uncharacterize 26.1 5.4E+02 0.018 26.2 12.7 97 25-121 200-329 (354)
348 2zwa_A Leucine carboxyl methyl 21.4 7.2E+02 0.025 28.1 13.4 106 31-140 396-522 (695)
349 3id6_A NOP5, PRE mRNA splicing 21.1 2.1E+02 0.0072 28.5 7.4 40 412-451 126-165 (268)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.90 E-value=1.7e-22 Score=214.69 Aligned_cols=205 Identities=12% Similarity=0.117 Sum_probs=160.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.+++|+|+++++|+++.||.|++|++ +++.+..+. |...|.+++|+|+|++|++|+.||+|++||+++++.+..+.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 94 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 4999999999999999999999999999 566666665 67789999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-CeeEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RFSILCS 179 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L~s 179 (763)
+|...|.+++|+|++.++++++ .|+++++||...... +.....++...+ ..+ .+++ +..+|++
T Consensus 95 ~h~~~v~~~~~~~~~~~l~sgs------~D~~v~lWd~~~~~~-~~~~~~~h~~~v-------~~v--~~~p~~~~~l~s 158 (304)
T 2ynn_A 95 AHPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWA-LEQTFEGHEHFV-------MCV--AFNPKDPSTFAS 158 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE------TTSCEEEEEGGGTTE-EEEEECCCCSCE-------EEE--EECTTCTTEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEC------CCCeEEEEECCCCcc-hhhhhcccCCcE-------EEE--EECCCCCCEEEE
Confidence 9999999999999999999998 899999999865311 111122333222 223 3344 4578999
Q ss_pred EcCCCcEEEEEcCcee-eee-----------eeeccc--ccccccCCCCCceeeec--------------cceeeEEecC
Q 004298 180 GDKDGSICFNIFGIFP-IGK-----------INIHKF--HVAIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-ig~-----------~~i~~~--~~~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
|+.||+|++|+.+... ... +..... .....+++.++.+++|+ ..|..++|+|
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 9999999999875321 111 111110 11245777899999997 4688899999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
++..|+.++.|+
T Consensus 239 ~~~~l~s~s~Dg 250 (304)
T 2ynn_A 239 TLPIIISGSEDG 250 (304)
T ss_dssp SSSEEEEEETTS
T ss_pred CCCEEEEEcCCC
Confidence 999999888877
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.90 E-value=4.4e-22 Score=216.01 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=158.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe-----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI-----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~-----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|.+++|+|++ .+++|+.||+|+||++ +++.+... .|...|++++|+|||++|++|+.||+|++||+++++.+
T Consensus 84 ~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 84 GVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 39999999985 6779999999999999 45443322 37889999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+.+.+|...|+++.|++++. .+++++ .|+++++||.+..... +... .+ ...+..+.+.+ .+
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~--~~-------~~~~~~~~~~p-~~ 226 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCS------EDNRILLWDTRCPKPASQIGCS--AP-------GYLPTSLAWHP-QQ 226 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTSSSCEEECC-------------CCCEEEEEECS-SC
T ss_pred EEEcCcCCceEEEEecCCCCCceeeec------cccccccccccccceeeeeecc--ee-------eccceeeeecC-CC
Confidence 99999999999999999985 578887 8999999998753211 1100 00 01111222221 34
Q ss_pred eeEEEEEcCCCcEEEEEcCce-eeeeeeeccc----------c-cccccCCCCCceeeec-------------cceeeEE
Q 004298 174 FSILCSGDKDGSICFNIFGIF-PIGKINIHKF----------H-VAIPNADEQGTCRLLN-------------ASIYKVA 228 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~----------~-~~~~s~~~~~~~~l~~-------------~~I~~v~ 228 (763)
.+++++|+.||+|++|+.... .+.++..|.. . .-+.+++.|+.+++|+ ..|.+++
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~ 306 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 306 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEE
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEE
Confidence 578999999999999987543 2222222211 1 1134677899999997 4689999
Q ss_pred ecCCCCEEEEEee-cCccccccCCCCCCcEEEEEeeccccc
Q 004298 229 LSKDLFHLTVLCS-GQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 229 ~SpDg~~Llv~~~-d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
||||++.+++.+. |+ .|.++.++..-+.
T Consensus 307 ~sp~~~~llas~s~D~------------~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDH------------QVVHHVVPTEPLP 335 (344)
T ss_dssp ECSSSTTEEEEEETTS------------CEEEEECCC----
T ss_pred EeCCCCeEEEEEcCCC------------eEEEEECCCCCCC
Confidence 9999988776544 44 7888877765443
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.89 E-value=6.6e-22 Score=219.65 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|++.++|+|+.||+|+||++ +++.+..+. |...|++++|+|+|++|++|+.||+|++||+.++++++.+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 45999999999999999999999999999 666666665 7889999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.|+|++..+++++ .|+++++||..... ......++...+ . ...++++++++++
T Consensus 189 ~~h~~~V~~v~~~p~~~~l~s~s------~D~~i~~wd~~~~~--~~~~~~~h~~~v-------~--~~~~~~~g~~l~s 251 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPNGDHIVSAS------RDKTIKMWEVQTGY--CVKTFTGHREWV-------R--MVRPNQDGTLIAS 251 (410)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTTCC--EEEEEECCSSCE-------E--EEEECTTSSEEEE
T ss_pred cCCCCCEEEEEEeCCCCEEEEEe------CCCeEEEEECCCCc--EEEEEeCCCccE-------E--EEEECCCCCEEEE
Confidence 99999999999999999999998 89999999987531 111122332222 1 2235577889999
Q ss_pred EcCCCcEEEEEcCceee-eeeeeccc------------------------------ccccccCCCCCceeeec-------
Q 004298 180 GDKDGSICFNIFGIFPI-GKINIHKF------------------------------HVAIPNADEQGTCRLLN------- 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~i-g~~~i~~~------------------------------~~~~~s~~~~~~~~l~~------- 221 (763)
|+.||+|++|+...... ..+..+.. ...+.+++.++.+++|+
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 99999999998754321 11111110 01134667889999997
Q ss_pred -------cceeeEEecCCCCEEEEEeecC
Q 004298 222 -------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|+|+++++++.|+
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3588999999999999988776
No 4
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.88 E-value=4.8e-21 Score=207.38 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=158.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC---
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--- 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--- 93 (763)
...|.+++|+|++++||+++.|++|++|+.+.. .+..+. |...|.+++|+|+|++|++|+.||+|++||+.++
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 140 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence 345999999999999999999999999998543 344454 7789999999999999999999999999999876
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+++..+.+|...|.++.|+|++.++++++ .|+++++|+.............+|...+ . ...++++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~i~~w~~~~~~~~~~~~~~~h~~~v-------~--~l~~sp~ 205 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHPSQELLASAS------YDDTVKLYREEEDDWVCCATLEGHESTV-------W--SLAFDPS 205 (345)
T ss_dssp EEEEEECCCCSCEEEEEECSSSSCEEEEE------TTSCEEEEEEETTEEEEEEEECCCSSCE-------E--EEEECTT
T ss_pred EEEEEecCcCCCeEEEEECCCCCEEEEEe------CCCcEEEEEecCCCEEEEEEecCCCCce-------E--EEEECCC
Confidence 45677889999999999999999999998 8999999987642111111122332222 2 2345678
Q ss_pred eeEEEEEcCCCcEEEEEcCce---------------------------eeeeeeecccccccccCCCCCceeeec-----
Q 004298 174 FSILCSGDKDGSICFNIFGIF---------------------------PIGKINIHKFHVAIPNADEQGTCRLLN----- 221 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~---------------------------~ig~~~i~~~~~~~~s~~~~~~~~l~~----- 221 (763)
+++|++|+.||+|++|+.... .+-.+........+.+++.++.+++|+
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 889999999999999974210 000111111111234556677777774
Q ss_pred ------------------cceeeEEecCCCC-EEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 222 ------------------ASIYKVALSKDLF-HLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 222 ------------------~~I~~v~~SpDg~-~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
..|.+++|+|++. .|+.++.|+ .+.++.+...
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg------------~v~~W~~~~~ 336 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG------------EVAFWKYQRP 336 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS------------CEEEEEECC-
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC------------cEEEEEecCC
Confidence 3488899999986 555555554 7888877654
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.87 E-value=4.1e-21 Score=206.01 Aligned_cols=187 Identities=20% Similarity=0.310 Sum_probs=152.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..+.+++|+|+++++|+++.||.|.+|++ +++..+.+. ++..|.+++|+|||++||+|+.||.|++||+++++.++.+
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 45888999999999999999999999999 667777665 6778999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.+++|+|+++++++++ .|+++++||.... .......++...+ ....+++++.+|++
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s------~dg~i~iwd~~~~--~~~~~~~~h~~~v---------~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTAS------DDGYIKIYDVQHA--NLAGTLSGHASWV---------LNVAFCPDDTHFVS 265 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEEC------TTSCEEEEETTTC--CEEEEECCCSSCE---------EEEEECTTSSEEEE
T ss_pred cccCCceeEEEEcCCCCEEEEEc------CCCeEEEEECCCc--ceeEEEcCCCCce---------EEEEECCCCCEEEE
Confidence 99999999999999999999998 8999999998753 1111222333322 23345677889999
Q ss_pred EcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+.||+|++|+...... ..+. -....|.+++|+|||+.|+.++.|+
T Consensus 266 ~s~D~~v~iwd~~~~~~~~~~~------------------~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTRTCVHTFF------------------DHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEEC------------------CCSSCEEEEEECTTSSEEEEEETTC
T ss_pred EeCCCcEEEEeCCCCEEEEEEc------------------CCCCcEEEEEECCCCCEEEEEeCCC
Confidence 99999999999765322 2221 1124688999999999999888766
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.87 E-value=4.8e-21 Score=207.39 Aligned_cols=206 Identities=16% Similarity=0.249 Sum_probs=156.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-E--EEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--eE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-L--WTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--KL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v--~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~~ 95 (763)
.|.+++|+|++++||+|+.|++|+||++.+.. + ..+ .|...|.+++|+|||++||+|+.||+|+||++.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 69999999999999999999999999995543 2 122 37789999999999999999999999999999876 46
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+..+.+|...|.+++|+|++.++++++ .|+++++||...... .......++.. .+..+ .+++++
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~h~~-------~v~~~--~~~p~~ 162 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCS------RDKSVWVWEVDEEDEYECVSVLNSHTQ-------DVKHV--VWHPSQ 162 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEEECTTSCEEEEEEECCCCS-------CEEEE--EECSSS
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEE------CCCeEEEEECCCCCCeEEEEEecCcCC-------CeEEE--EECCCC
Confidence 788999999999999999999999998 899999999865211 00011112222 22223 345777
Q ss_pred eEEEEEcCCCcEEEEEcCcee---eeeeeeccc----------ccccccCCCCCceeeec--------------------
Q 004298 175 SILCSGDKDGSICFNIFGIFP---IGKINIHKF----------HVAIPNADEQGTCRLLN-------------------- 221 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~---ig~~~i~~~----------~~~~~s~~~~~~~~l~~-------------------- 221 (763)
++|++|+.||+|++|+..... ...+.-|.. ...+.+++.|+.+++|+
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 899999999999999864321 122221111 11234677889999985
Q ss_pred ----------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ----------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|++..+++++.|+
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 2477899999999999888776
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.87 E-value=1.1e-20 Score=200.80 Aligned_cols=205 Identities=16% Similarity=0.230 Sum_probs=156.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-eEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-KLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-~~~~~l 99 (763)
.|.+++|+|++++|++|+.|++|++|++ +++.+..+. |...|++++|+|++++|++|+.||+|++||++++ .....+
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 4999999999999999999999999999 677777775 7889999999999999999999999999999987 556778
Q ss_pred cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
.+|...|.+++|+| ++..+++++ .|+++++||......... ...++ ...+..+.+.+.+++.+|+
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs------~D~~v~iwd~~~~~~~~~-~~~~~-------~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGC------LDRTVKVWSLGQSTPNFT-LTTGQ-------ERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEE------TTSEEEEEETTCSSCSEE-EECCC-------TTCEEEEEECCSTTCCEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEe------CCCeEEEEECCCCCccce-eccCC-------cCcEEEEEEEEcCCCCEEE
Confidence 99999999999999 567899998 899999999865321110 00111 1223334455556778999
Q ss_pred EEcCCCcEEEEEcCcee-eeeeeeccc----------ccccccCCCCCceeeec--------------cceeeEEecCCC
Q 004298 179 SGDKDGSICFNIFGIFP-IGKINIHKF----------HVAIPNADEQGTCRLLN--------------ASIYKVALSKDL 233 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~-ig~~~i~~~----------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg 233 (763)
+|+.||+|++|+..... +..+..|.. ...+.+++.++.+++|+ ..+.+++++|++
T Consensus 203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred EEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence 99999999999876532 233322221 11235778899999998 357788999988
Q ss_pred CEE-EEEee
Q 004298 234 FHL-TVLCS 241 (763)
Q Consensus 234 ~~L-lv~~~ 241 (763)
... ++++.
T Consensus 283 ~~~~~asg~ 291 (304)
T 2ynn_A 283 RKNYIASGF 291 (304)
T ss_dssp GGGCEEEEE
T ss_pred CceEEEEec
Confidence 642 44433
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.87 E-value=8e-21 Score=206.59 Aligned_cols=205 Identities=13% Similarity=0.168 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---------------------------------EEEec--------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---------------------------------LWTIS-------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---------------------------------v~~~~-------- 59 (763)
+.|.+++|+|++++||+|+.||+|++|+. +++. +|.+.
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 45999999999999999999999999996 3332 23221
Q ss_pred --------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeec--CCCceeccCCCCCccc
Q 004298 60 --------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE--DAQPSKNDFGNIPTYE 129 (763)
Q Consensus 60 --------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~--~~~~l~s~s~~~~~~~ 129 (763)
|...|.+++|+|+++.|++|+.||+|++||+++++.+..+.+|...|.++.|+| ++..+++++ .
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs------~ 218 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG------C 218 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE------T
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe------C
Confidence 445689999999999999999999999999999999999999999999999987 467899998 8
Q ss_pred CCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeee--------
Q 004298 130 DRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKIN-------- 200 (763)
Q Consensus 130 d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~-------- 200 (763)
|+++++||..... ......++.. .+.. ..++++++.|++|+.||+|++|+..... ...+.
T Consensus 219 Dg~v~~wd~~~~~--~~~~~~~h~~-------~v~~--v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 219 DKKAMVWDMRSGQ--CVQAFETHES-------DVNS--VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp TSCEEEEETTTCC--EEEEECCCSS-------CEEE--EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CCeEEEEECCCCc--EEEEecCCCC-------CeEE--EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 9999999987531 1111122222 2222 3345777899999999999999876432 11111
Q ss_pred ----ecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 201 ----IHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 201 ----i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.......+++.++.+++|+ ..|.+++|||||++|++++.|+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 111111123556788899887 4688999999999999887765
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.87 E-value=7.1e-21 Score=211.29 Aligned_cols=207 Identities=17% Similarity=0.176 Sum_probs=159.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|++++||+|+.|++|++|++ +++.+..+. |...|.+++|+|+|++|++|+.||+|++||+++++++..+
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 45999999999999999999999999999 555666664 7789999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc---------
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS--------- 170 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~--------- 170 (763)
.+|...|.++.|+|++..+++++ .|+++++||...... .....++...+ ..+.+.+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s------~D~~v~vwd~~~~~~--~~~~~~h~~~v-------~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCS------NDQTVRVWVVATKEC--KAELREHRHVV-------ECISWAPESSYSSISE 295 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCE--EEEECCCSSCE-------EEEEECCSCGGGGGGG
T ss_pred eCCCccEEEEEECCCCCEEEEEc------CCCeEEEEECCCCce--eeEecCCCceE-------EEEEEcCcccccchhh
Confidence 99999999999999999999998 899999999875311 11111121111 1111111
Q ss_pred ---------CCCeeEEEEEcCCCcEEEEEcCce-eeeeeeeccc----------ccccccCCCCCceeeec---------
Q 004298 171 ---------HQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKF----------HVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 171 ---------~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~----------~~~~~s~~~~~~~~l~~--------- 221 (763)
...+.+|++|+.||+|++|+.... .+..+..|.. ...+.+++.++.+++|+
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 123678999999999999987642 2222222211 11234677899999997
Q ss_pred -----cceeeEEecCCCCEEEEEeecC
Q 004298 222 -----ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|++..+++++.|+
T Consensus 376 ~~~h~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3689999999999999888776
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.87 E-value=1.3e-20 Score=201.71 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=154.6
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC------ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNW------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|++ ++|++|+.|++|++|++.. ..+..+. |...|.+++|+|||++|++|+.||+|++||++++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 459999999965 8999999999999999842 2344443 7889999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc---
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS--- 170 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~--- 170 (763)
+.+..+.+|...|.+++|+|++..+++++ .|+++++||..... .....++...+ ..+.+.+
T Consensus 98 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~vwd~~~~~---~~~~~~h~~~v-------~~~~~~~~~~ 161 (319)
T 3frx_A 98 ETYQRFVGHKSDVMSVDIDKKASMIISGS------RDKTIKVWTIKGQC---LATLLGHNDWV-------SQVRVVPNEK 161 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEE------TTSCEEEEETTSCE---EEEECCCSSCE-------EEEEECCC--
T ss_pred CeeEEEccCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCe---EEEEeccCCcE-------EEEEEccCCC
Confidence 99999999999999999999999999998 89999999986421 11111222211 1222222
Q ss_pred -CCCeeEEEEEcCCCcEEEEEcCceeee-eeeec----------ccccccccCCCCCceeeec-------------ccee
Q 004298 171 -HQRFSILCSGDKDGSICFNIFGIFPIG-KINIH----------KFHVAIPNADEQGTCRLLN-------------ASIY 225 (763)
Q Consensus 171 -~~~~~~L~sgs~DG~I~lw~~~~~~ig-~~~i~----------~~~~~~~s~~~~~~~~l~~-------------~~I~ 225 (763)
.++...+++|+.||+|++|+....... .+..| .....+.+++.++.+++|+ ..|.
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 241 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEE
Confidence 124558999999999999987654321 11111 1111234677889999997 3688
Q ss_pred eEEecCCCCEEEEEeec
Q 004298 226 KVALSKDLFHLTVLCSG 242 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d 242 (763)
+++|+||+..++++..+
T Consensus 242 ~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 242 SLAFSPNRYWLAAATAT 258 (319)
T ss_dssp EEEECSSSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEcCC
Confidence 99999999988876543
No 11
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.87 E-value=1e-20 Score=200.28 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=158.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCe-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGK- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~- 94 (763)
+.|.+++|+|++++||+|+.|++|+||++.+ +.+..+. |...|.+++|+| +|++||+|+.||+|++||+++++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 3499999999999999999999999999953 3455554 888999999986 48999999999999999999874
Q ss_pred -EEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 -LLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 -~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+..|...|.+++|+|+ +..+++++ .|+++++|+.............++.. .+..+.+.+.
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s------~d~~v~~wd~~~~~~~~~~~~~~h~~-------~v~~~~~~p~ 156 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVAS------SDGKVSVVEFKENGTTSPIIIDAHAI-------GVNSASWAPA 156 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEEBCSSSCBCCEEEECCSS-------CEEEEEECCC
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEE------CCCcEEEEEecCCCceeeeeeecccC-------ccceEeecCC
Confidence 56677889999999999997 78899988 89999999987531111111122221 1222333321
Q ss_pred -----------CCeeEEEEEcCCCcEEEEEcCce-----eeeeeeeccc-----c--------cccccCCCCCceeeec-
Q 004298 172 -----------QRFSILCSGDKDGSICFNIFGIF-----PIGKINIHKF-----H--------VAIPNADEQGTCRLLN- 221 (763)
Q Consensus 172 -----------~~~~~L~sgs~DG~I~lw~~~~~-----~ig~~~i~~~-----~--------~~~~s~~~~~~~~l~~- 221 (763)
+++++|++|+.||+|++|++... ....+..|.. . ..+.+++.|+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 12468999999999999986431 1122221111 0 1244677889999985
Q ss_pred ------------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 222 ------------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 222 ------------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
..|.+++|||||+.|++++.|+ .++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~------------~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------------KVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS------------CEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC------------cEEEEEEC
Confidence 2367889999999999888766 67777654
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.7e-21 Score=204.47 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=151.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC--------ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW--------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
...|.+++|+|++++||+++.|++|+||++.. +.+..+. |...|.+++|+|||++||+|+.||+|++||+.
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 34599999999999999999999999999832 2334443 77899999999999999999999999999994
Q ss_pred C----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 92 N----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 92 ~----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
+ .+++..+.+|...|.++.|+|++..+++++ .|+++++|+.............+|... +..+.
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~i~iW~~~~~~~~~~~~~~~h~~~-------v~~~~ 204 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS------YDDTVRIWKDYDDDWECVAVLNGHEGT-------VWSSD 204 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE------TTSCEEEEEEETTEEEEEEEECCCSSC-------EEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc------CCCeEEEEECCCCCeeEEEEccCCCCc-------EEEEE
Confidence 3 357788999999999999999999999998 899999998654210111112233222 22333
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCce---------eeeeeee-ccc---------ccccccCCCCCceeeec-------
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIF---------PIGKINI-HKF---------HVAIPNADEQGTCRLLN------- 221 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~---------~ig~~~i-~~~---------~~~~~s~~~~~~~~l~~------- 221 (763)
+.+...+..|++|+.||+|++|++... ....+.. +.. ...+.+++.++.+++|+
T Consensus 205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~ 284 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWK 284 (330)
T ss_dssp ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEE
T ss_pred ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceE
Confidence 433333678999999999999986431 1111110 110 11234667788888875
Q ss_pred ----------c-ceeeEEecC--CCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 222 ----------A-SIYKVALSK--DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 222 ----------~-~I~~v~~Sp--Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
. .|.+++|+| |++.|+.++.|+ .++++.++
T Consensus 285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg------------~v~~W~~~ 327 (330)
T 2hes_X 285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDG------------IVNFWSLE 327 (330)
T ss_dssp EEEEESCTTTTSCEEEEEEC-----CCEEEEETTS------------EEEEEEC-
T ss_pred EEeccccccccceEEEEEEecCCCceEEEEecCCC------------cEEEEEec
Confidence 1 567788988 677787777665 67777654
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.86 E-value=1.9e-20 Score=202.41 Aligned_cols=191 Identities=9% Similarity=0.062 Sum_probs=144.7
Q ss_pred CCeEEEEE-----cC-CCCEEEEEeCCCeEEEEEccC--------ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEW-----NP-EKDLLAMATEDSKILLHRFNW--------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~-----sP-~~~lLA~~s~Dg~V~v~~l~~--------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
+.|.+++| +| ++++||+|+.|++|++|++.. .....+. |...|.+++|+|+++++++|+.||+|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 34999999 77 899999999999999999842 2233333 778999999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+||+++++.+..+.+|...|.+++|+|+++.+++++ .|+++++||.............++... +..+
T Consensus 102 lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~~~-------v~~~ 168 (343)
T 2xzm_R 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG------AEREIKLWNILGECKFSSAEKENHSDW-------VSCV 168 (343)
T ss_dssp EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE------TTSCEEEEESSSCEEEECCTTTSCSSC-------EEEE
T ss_pred EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc------CCCEEEEEeccCCceeeeecccCCCce-------eeee
Confidence 999999999999999999999999999999999998 899999999864210000000111111 1122
Q ss_pred eccc--------CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 167 ANSS--------HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 167 ~~~~--------~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
.+.+ .+...++++|+.||+|++|+........+. .+...|.+++|+|||++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK------------------AHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE------------------CCSSCEEEEEECTTSSEEEE
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc------------------CccccceEEEECCCCCEEEE
Confidence 2221 223478999999999999985433222221 12246889999999999999
Q ss_pred EeecC
Q 004298 239 LCSGQ 243 (763)
Q Consensus 239 ~~~d~ 243 (763)
++.|+
T Consensus 231 gs~dg 235 (343)
T 2xzm_R 231 GGKDK 235 (343)
T ss_dssp EETTC
T ss_pred EcCCC
Confidence 88776
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.86 E-value=4e-20 Score=198.31 Aligned_cols=208 Identities=18% Similarity=0.194 Sum_probs=159.7
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEEccCce---EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 19 PVASQIKIAEWNPE----KDLLAMATEDSKILLHRFNWQR---LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 19 ~~~~~V~~l~~sP~----~~lLA~~s~Dg~V~v~~l~~~~---v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
...+.|.+++|+|+ +++||+|+.|++|+||++...+ .|.+. |...|.+++|+|+++++++|+.||+|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 34566999999985 5799999999999999995443 34554 7788999999999999999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
++++.+..+..|...+.+++|+|+++.+++++ .++.+++|+....... .....+.. .+ ....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~------~dg~v~i~~~~~~~~~--~~~~~~~~-------~v--~~~~~ 172 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT------HVGKVNIFGVESGKKE--YSLDTRGK-------FI--LSIAY 172 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEEC------TTSEEEEEETTTCSEE--EEEECSSS-------CE--EEEEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEc------CCCcEEEEEcCCCcee--EEecCCCc-------eE--EEEEE
Confidence 99999999999999999999999999999998 8999999998753111 00111111 11 22345
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc----------cccccCCCCCceeeec--------------ccee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH----------VAIPNADEQGTCRLLN--------------ASIY 225 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~----------~~~~s~~~~~~~~l~~--------------~~I~ 225 (763)
++++++|++|+.||.|++|+.... .+..+..+..+ ..+.+++.++.+++|+ ..|.
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence 678889999999999999987543 22223222211 1234677889999997 3588
Q ss_pred eEEecCCCCEEEEEeecC
Q 004298 226 KVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d~ 243 (763)
+++|+|||++|+.++.|+
T Consensus 253 ~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp EEEECTTSSEEEEEETTS
T ss_pred EEEECCCCCEEEEEeCCC
Confidence 999999999999988876
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.86 E-value=3.3e-20 Score=200.28 Aligned_cols=204 Identities=21% Similarity=0.248 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC----eE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG----KL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g----~~ 95 (763)
+.|.+++|+|+++++|+++.||+|++|+. +++.+..+. |...|.+++|+|+|++|++|+.||.|++|++.++ +.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 45999999999999999999999999998 677777665 7778999999999999999999999999999865 46
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...+.+|...|.++.|++++. +++++ .|+++++||..... ......++... +. ...++++++
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~~-l~s~s------~d~~i~~wd~~~~~--~~~~~~~h~~~-------v~--~~~~~~~~~ 197 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDNQ-IVTSS------GDTTCALWDIETGQ--QTTTFTGHTGD-------VM--SLSLAPDTR 197 (340)
T ss_dssp EEEEECCSSCEEEEEEEETTE-EEEEE------TTSCEEEEETTTTE--EEEEECCCSSC-------EE--EEEECTTSS
T ss_pred EEEecCCCccEEEEEECCCCc-EEEEE------CCCcEEEEECCCCc--EEEEEcCCCCc-------eE--EEEECCCCC
Confidence 677889999999999999887 56666 79999999987531 11111223222 22 233556778
Q ss_pred EEEEEcCCCcEEEEEcCcee-eeeeeecc----------cccccccCCCCCceeeec----------------cceeeEE
Q 004298 176 ILCSGDKDGSICFNIFGIFP-IGKINIHK----------FHVAIPNADEQGTCRLLN----------------ASIYKVA 228 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~-ig~~~i~~----------~~~~~~s~~~~~~~~l~~----------------~~I~~v~ 228 (763)
++++|+.||+|++|+..... ...+..+. ....+.+++.++.+++|+ ..|.+++
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 99999999999999865432 22222111 112234677889999997 1478899
Q ss_pred ecCCCCEEEEEeecC
Q 004298 229 LSKDLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~ 243 (763)
|+|||+.+++++.++
T Consensus 278 ~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 278 FSKSGRLLLAGYDDF 292 (340)
T ss_dssp ECTTSSEEEEEETTS
T ss_pred ECCCCCEEEEECCCC
Confidence 999999999988776
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.86 E-value=3.6e-20 Score=201.69 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=153.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEE-----EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLW-----TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~-----~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|.+++|+|++.++ +++.||+|+||++ +++.+. ...|...|++++|+|||++|++|+.||.|++||+++++.+
T Consensus 96 ~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 96 GVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp CEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 39999999998655 5788999999998 443322 2237789999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-Ce
Q 004298 97 RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (763)
..+.+|...|++++|++++. .+++++ .|+++++||..............+. ..+..+. +++ ..
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~------~dg~v~~wd~~~~~~~~~~~~~~~~-------~~v~~v~--~sp~~~ 239 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCG------EDGRILLWDTRKPKPATRIDFCASD-------TIPTSVT--WHPEKD 239 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEE------TTSCEEECCTTSSSCBCBCCCTTCC-------SCEEEEE--ECTTST
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeec------cCCceEEEECCCCceeeeeeecccc-------ccccchh--hhhccc
Confidence 99999999999999999885 677777 8999999998763221111011111 1122233 333 35
Q ss_pred eEEEEEcCCCcEEEEEcCcee-eeeeeecc-----cc------cccccCCCCCceeeec-------------cceeeEEe
Q 004298 175 SILCSGDKDGSICFNIFGIFP-IGKINIHK-----FH------VAIPNADEQGTCRLLN-------------ASIYKVAL 229 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~-----~~------~~~~s~~~~~~~~l~~-------------~~I~~v~~ 229 (763)
.+|++|+.||.|++|+..... ...+..+. +. .-+.+++.|+.+++|+ ..|.+++|
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vaf 319 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAW 319 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence 689999999999999865431 11121111 11 1134677889999997 46899999
Q ss_pred cC-CCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 230 SK-DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 230 Sp-Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
|| |++.|+.++.|+ .++++.+..
T Consensus 320 sP~d~~~l~s~s~Dg------------~v~iW~~~~ 343 (357)
T 4g56_B 320 SPLDHSKFTTVGWDH------------KVLHHHLPS 343 (357)
T ss_dssp CSSSTTEEEEEETTS------------CEEEEECC-
T ss_pred eCCCCCEEEEEcCCC------------eEEEEECCC
Confidence 98 888888887766 777777654
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.85 E-value=6.4e-20 Score=198.04 Aligned_cols=204 Identities=12% Similarity=0.126 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-----RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|.+++|+|+++++|+++.|+.|++|++... ....+ .|...|.++.|+|+++ +++|+.||+|++||+++++.
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE
Confidence 35999999999999999999999999998432 22222 3778899999999886 88999999999999999999
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
+..+.+|...|.+++|+|++.++++++ .|+++++||..... ......++... +. ..+++++++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~------~d~~v~~wd~~~~~--~~~~~~~h~~~-------v~--~v~~~p~~~ 239 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGA------CDASAKLWDVREGM--CRQTFTGHESD-------IN--AICFFPNGN 239 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCS--EEEEECCCSSC-------EE--EEEECTTSS
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEe------CCCcEEEEECCCCe--eEEEEcCCcCC-------EE--EEEEcCCCC
Confidence 999999999999999999999999998 89999999987531 11111222221 22 234557788
Q ss_pred EEEEEcCCCcEEEEEcCcee-eeeee------------ecccccccccCCCCCceeeec--------------cceeeEE
Q 004298 176 ILCSGDKDGSICFNIFGIFP-IGKIN------------IHKFHVAIPNADEQGTCRLLN--------------ASIYKVA 228 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~-ig~~~------------i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~ 228 (763)
+|++|+.||+|++|+..... ...+. .+.......+++.++.+++|+ .+|.+++
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 99999999999999976432 22221 111111233566788899987 4689999
Q ss_pred ecCCCCEEEEEeecC
Q 004298 229 LSKDLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~ 243 (763)
|+|||++|+.++.|+
T Consensus 320 ~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 320 VTDDGMAVATGSWDS 334 (340)
T ss_dssp ECTTSSCEEEEETTS
T ss_pred EcCCCCEEEEEcCCc
Confidence 999999999888776
No 18
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.85 E-value=2.4e-20 Score=199.33 Aligned_cols=209 Identities=14% Similarity=0.103 Sum_probs=152.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cc--eEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCC--
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQ--RLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENG-- 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~--~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g-- 93 (763)
+.|.+++|+|++++||+|+.|++|+||++. ++ .+..+. |...|.+++|+| +|++|++|+.||+|++||++++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 349999999999999999999999999994 33 244444 888999999986 5999999999999999999987
Q ss_pred eEEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceeccc
Q 004298 94 KLLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
+....+.+|...|.+++|+|+ +.++++++ .|+++++|+...... .......++...+ ..+.+.+
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v-------~~~~~~~ 160 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGS------SDGAISLLTYTGEGQWEVKKINNAHTIGC-------NAVSWAP 160 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEEC------SSSCEEEEEECSSSCEEECCBTTSSSSCB-------CCCEECC
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEc------CCCCEEEEecCCCCCcceeeeeccccCCc-------ceEEEcc
Confidence 467778899999999999998 78899998 899999999765310 0011111221111 1122211
Q ss_pred C---------------CCeeEEEEEcCCCcEEEEEcCce----eeeeeeeccc-----c---------cccccCCCCCce
Q 004298 171 H---------------QRFSILCSGDKDGSICFNIFGIF----PIGKINIHKF-----H---------VAIPNADEQGTC 217 (763)
Q Consensus 171 ~---------------~~~~~L~sgs~DG~I~lw~~~~~----~ig~~~i~~~-----~---------~~~~s~~~~~~~ 217 (763)
. ..+.+|++|+.||+|++|+...- ....+..|.. . ..+.+++.|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 1 12468999999999999987521 2222221211 1 124567788888
Q ss_pred eeec------------------cceeeEEecCCCCEEEEEeecC
Q 004298 218 RLLN------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 218 ~l~~------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++|+ ..|.+++|+|||+.|++++.|+
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 8884 2478899999999999988776
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.85 E-value=1.3e-19 Score=192.48 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=149.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|+++++|+++.||.|++|++ +++.+..+. |...|.+++|+|||++|++|+.||.|++||+++++.+..+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 45999999999999999999999999999 566666665 7788999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.|+|++..+++++ .|+.+++||...... ......+.. .+..+ .+++++++|++
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~~~~~~-------~v~~~--~~~~~~~~l~~ 166 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGS------FDESVRIWDVKTGKC--LKTLPAHSD-------PVSAV--HFNRDGSLIVS 166 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEE------TTSCEEEEETTTCCE--EEEECCCSS-------CEEEE--EECTTSSEEEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCEE--EEEecCCCC-------cEEEE--EEcCCCCEEEE
Confidence 99999999999999999999998 899999999875311 111111211 12223 34567789999
Q ss_pred EcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+.||.|++|+...... ..+.. . ...++..++|+|+++++++++.++
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~----------~-------~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLID----------D-------DNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECC----------S-------SCCCEEEEEECTTSSEEEEEETTT
T ss_pred EeCCCcEEEEECCCCceeeEEec----------c-------CCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999999764321 11100 0 013477899999999999888766
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.85 E-value=1.3e-19 Score=192.40 Aligned_cols=216 Identities=16% Similarity=0.170 Sum_probs=165.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++++.|+.|++|++ +++.+..+. |...|.+++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 45999999999999999999999999999 566666665 7788999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..|...|.++.|+|++..+++++ .|+.+++||....... ......+ ...+. ...+++++++|++
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~-~~~~~~~-------~~~~~--~~~~~~~~~~l~~ 209 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSS------YDGLCRIWDTASGQCL-KTLIDDD-------NPPVS--FVKFSPNGKYILA 209 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCEE-EEECCSS-------CCCEE--EEEECTTSSEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCcee-eEEeccC-------CCceE--EEEECCCCCEEEE
Confidence 99999999999999999999998 8999999998753110 0000011 11111 2335677889999
Q ss_pred EcCCCcEEEEEcCcee-eeeeeeccc-------------ccccccCCCCCceeeec--------------cceeeEEecC
Q 004298 180 GDKDGSICFNIFGIFP-IGKINIHKF-------------HVAIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-ig~~~i~~~-------------~~~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
|+.||.|++|++.... ...+..+.. .....+++.++.+++|+ ..|.+++|+|
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC
Confidence 9999999999876532 222221111 01134677899999997 4588999999
Q ss_pred CCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 232 DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 232 Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
+++.++.++.++ ...+.++..|
T Consensus 290 ~~~~l~s~~~~~----------d~~i~~W~~d 311 (312)
T 4ery_A 290 TENIIASAALEN----------DKTIKLWKSD 311 (312)
T ss_dssp SSSEEEEEECTT----------TCCEEEEECC
T ss_pred cCCceEEEEccC----------CccEEEecCC
Confidence 999988776311 1267777654
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.85 E-value=6.2e-20 Score=201.42 Aligned_cols=215 Identities=19% Similarity=0.221 Sum_probs=150.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCC------------------------
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGK------------------------ 74 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~------------------------ 74 (763)
.+.|.+++|+|++++||+|+.|++|+||+. +++.+..+. |...|.+++|+|||+
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence 345999999999999999999999999998 555544443 334444444444443
Q ss_pred --------------------------EEEEEEcCCcEEEEEccCCeEEEEe-----cccCCceeEEEeec-CCCceeccC
Q 004298 75 --------------------------AIAVGLEDGTITLHDVENGKLLRSL-----KSHTVAVVCLNWEE-DAQPSKNDF 122 (763)
Q Consensus 75 --------------------------~Lasg~~Dg~V~lwdve~g~~~~~l-----~~h~~~V~~l~ws~-~~~~l~s~s 122 (763)
.|++|+.||+|++||+++++.+..+ .+|...|.++.|++ ++..+++|+
T Consensus 146 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 4666677777788887777777766 57888999999977 778899998
Q ss_pred CCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeee
Q 004298 123 GNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINI 201 (763)
Q Consensus 123 ~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i 201 (763)
.|+++++||.+.... ......+|...+ ..+ .++++++.|++|+.||+|++|+..... +..+..
T Consensus 226 ------~D~~v~~wd~~~~~~-~~~~~~~h~~~v-------~~v--~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 226 ------CDTTVRLWDLRITSR-AVRTYHGHEGDI-------NSV--KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp ------TTSCEEEEETTTTCC-CCEEECCCSSCC-------CEE--EECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ------CCCeEEEEECCCCCc-ceEEECCcCCCe-------EEE--EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 899999999874211 111222333322 223 355778899999999999999876432 111111
Q ss_pred -----------------cccccccccCCCCCceeeec------------------cceeeEEecCCCCEEEEEeecCccc
Q 004298 202 -----------------HKFHVAIPNADEQGTCRLLN------------------ASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 202 -----------------~~~~~~~~s~~~~~~~~l~~------------------~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
+.......+++.++.+++|+ +.|.+++|||||++|+.++.|+
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~--- 366 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK--- 366 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS---
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC---
Confidence 11111123566788888886 3578899999999998887766
Q ss_pred cccCCCCCCcEEEEEee
Q 004298 247 EELGGHGMHGLHCLVLD 263 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld 263 (763)
.++++.+.
T Consensus 367 ---------~i~iW~~~ 374 (380)
T 3iz6_a 367 ---------NLKIWAFS 374 (380)
T ss_dssp ---------CEEEEECC
T ss_pred ---------CEEEEecC
Confidence 67777654
No 22
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.8e-20 Score=197.52 Aligned_cols=217 Identities=12% Similarity=0.122 Sum_probs=161.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCCe--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENGK-- 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g~-- 94 (763)
.|.+++|+|++++||+++.||.|++|++. ++.+..+. |...|++++|+|+ +++|++|+.||.|++||+++++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence 39999999999999999999999999994 33444554 7889999999987 9999999999999999999987
Q ss_pred EEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC-
Q 004298 95 LLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH- 171 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~- 171 (763)
.+..+..|...|.++.|+|+ +..+++++ .|+.+++||.............++. ..+..+.+.+.
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 159 (379)
T 3jrp_A 93 QIAVHAVHSASVNSVQWAPHEYGPLLLVAS------SDGKVSVVEFKENGTTSPIIIDAHA-------IGVNSASWAPAT 159 (379)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEECCTTSCCCEEEEECCT-------TCEEEEEECCCC
T ss_pred EeeeecCCCcceEEEEeCCCCCCCEEEEec------CCCcEEEEecCCCCceeeEEecCCC-------CceEEEEEcCcc
Confidence 77788889999999999999 88999988 8999999998764221111111221 12223333321
Q ss_pred ----------CCeeEEEEEcCCCcEEEEEcCce-----eeee----------eeeccc---ccccccCCCCCceeeec--
Q 004298 172 ----------QRFSILCSGDKDGSICFNIFGIF-----PIGK----------INIHKF---HVAIPNADEQGTCRLLN-- 221 (763)
Q Consensus 172 ----------~~~~~L~sgs~DG~I~lw~~~~~-----~ig~----------~~i~~~---~~~~~s~~~~~~~~l~~-- 221 (763)
++++.+++|+.||.|++|+.... .... +..+.. ...+.+++.++.+++|+
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 15788999999999999976431 1111 111111 12234566788888886
Q ss_pred -----------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -----------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -----------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
..|.+++|+|||+++++++.++ .++++.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------------~i~iw~~~~ 287 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------------KVTLWKENL 287 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS------------SEEEEEEEE
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC------------cEEEEeCCC
Confidence 3578899999999999888765 677777663
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.85 E-value=1.2e-19 Score=194.29 Aligned_cols=213 Identities=13% Similarity=0.073 Sum_probs=156.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|+++++++++.|++|++|++ +++.+..+. |...|.+++|+|++++|++|+.||+|++||++ ++.+..+
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 34999999999999999999999999999 566666664 78899999999999999999999999999986 6778888
Q ss_pred cccCCceeEEEeecCC------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 100 KSHTVAVVCLNWEEDA------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+|...|.++.|.|+. ..+++++ .|+.+++||..... ......+|...+ . ...++++
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~--~~~~~~~h~~~v-------~--~~~~sp~ 207 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAG------NDKMVKAWNLNQFQ--IEADFIGHNSNI-------N--TLTASPD 207 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEE------TTSCEEEEETTTTE--EEEEECCCCSCE-------E--EEEECTT
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEe------CCCEEEEEECCcch--hheeecCCCCcE-------E--EEEEcCC
Confidence 9999999999999854 4788887 89999999987521 111112232222 2 2345678
Q ss_pred eeEEEEEcCCCcEEEEEcCcee-eeeeeeccc----ccc----cccCCCCCceeeec----------------------c
Q 004298 174 FSILCSGDKDGSICFNIFGIFP-IGKINIHKF----HVA----IPNADEQGTCRLLN----------------------A 222 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~----~~~----~~s~~~~~~~~l~~----------------------~ 222 (763)
+++|++|+.||+|++|+..... +..+..+.. ... ....+.+..+++|+ .
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCc
Confidence 8899999999999999876532 222211110 000 01111223345543 2
Q ss_pred ceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 223 SIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 223 ~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
.+.+++|||||++|++++.|+ .++++.+.+
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg------------~i~vWd~~t 317 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDN------------VIRVWQVMT 317 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTS------------CEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCc------------eEEEEEEee
Confidence 467899999999999988776 788887765
No 24
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.84 E-value=1.5e-19 Score=195.16 Aligned_cols=211 Identities=12% Similarity=0.064 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++.++++++.|++|++|++ +++.+..+. |...|.+++|+|||++|++|+.||+|++||+. ++.....
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~ 155 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS 155 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee
Confidence 45999999999999999999999999999 667776665 88899999999999999999999999999998 4444333
Q ss_pred c---ccCCceeEEEeecCC----------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 100 K---SHTVAVVCLNWEEDA----------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 100 ~---~h~~~V~~l~ws~~~----------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
. .|...|.++.|+|++ .++++++ .|+++++||.... ......++... +.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~---~~~~~~~h~~~-------v~-- 217 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG------WDGRLKVWNTNFQ---IRYTFKAHESN-------VN-- 217 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE------TTSEEEEEETTTE---EEEEEECCSSC-------EE--
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEc------CCCEEEEEcCCCc---eeEEEcCcccc-------ce--
Confidence 3 688899999999987 5788887 8999999994321 11111222222 22
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCce--eeee---------eeecccccccccCCCCCceeeec--------------
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIF--PIGK---------INIHKFHVAIPNADEQGTCRLLN-------------- 221 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~--~ig~---------~~i~~~~~~~~s~~~~~~~~l~~-------------- 221 (763)
...+++++++|++|+.||+|++|+.... .... +..+.. ......+.++.+++|+
T Consensus 218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~-~~~la~~~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK-LQWVAVGTDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSS-SCEEEEEESSCEEEEESSSCCSCSEEECCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCC-CCEEEEECCCCEEEEEeCCCCCCceEEeec
Confidence 2345678889999999999999987321 1111 111110 1122334456677775
Q ss_pred -------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
..|.+++|+|||+.|++++.|+ .++++.+++
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg------------~v~~w~~~~ 340 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG------------VIRTFSFET 340 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS------------EEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc------------eEEEEEEEc
Confidence 1367899999999999888776 777777664
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.84 E-value=8.8e-20 Score=201.14 Aligned_cols=203 Identities=18% Similarity=0.205 Sum_probs=151.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC-------------------CcEEEEEEccCCCEEEEEEc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG-------------------KSVTSLCWRPDGKAIAVGLE 81 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~-------------------~~V~~l~wspDG~~Lasg~~ 81 (763)
+.|.+++|+|+|++||+++ ++.+.+|++ +++.+..+... ..|++++|+|||++||+|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 3499999999999999976 688999998 66666665411 24899999999999999999
Q ss_pred CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 82 DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
||.|++||+++++.+..+.+|...|.+++|+|++..+++++ .|+++++||....... ..... ..
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~v~iwd~~~~~~~--~~~~~--------~~ 207 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS------GDRTVRIWDLRTGQCS--LTLSI--------ED 207 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEE--EEEEC--------SS
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec------CCCcEEEEECCCCeeE--EEEEc--------CC
Confidence 99999999999999999999999999999999999999998 8999999998752110 00000 01
Q ss_pred cccceecccCC-CeeEEEEEcCCCcEEEEEcCcee-eeee-----------------eecccccccccCCCCCceeeecc
Q 004298 162 SFRELANSSHQ-RFSILCSGDKDGSICFNIFGIFP-IGKI-----------------NIHKFHVAIPNADEQGTCRLLNA 222 (763)
Q Consensus 162 ~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~~-ig~~-----------------~i~~~~~~~~s~~~~~~~~l~~~ 222 (763)
.+..+ .+++ +++++++|+.||+|++|+..... +..+ ........+.+++.++.+++|+.
T Consensus 208 ~v~~~--~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 208 GVTTV--AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp CEEEE--EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CcEEE--EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 11122 2334 67889999999999999865321 1111 11111112346667888888862
Q ss_pred --------------------------ceeeEEecCCCCEEEEEeecC
Q 004298 223 --------------------------SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 --------------------------~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.|.+++|+|++++++.++.|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 367899999999998888776
No 26
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.83 E-value=5.9e-19 Score=187.59 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cc----eEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQ----RLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~----~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|++++||+++.||.|++|++. +. .+..+. |...|++++|+| ||++|++|+.||.|++||++++
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 349999999999999999999999999994 32 233333 788999999999 6999999999999999999987
Q ss_pred ---------eEEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCC
Q 004298 94 ---------KLLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 94 ---------~~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+.+..+..|...|.++.|+|+ +..+++++ .|+.+++||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~ 143 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG------NDGILRLYDALE 143 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTCEEEEEECSS
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec------CCCcEEEecCCC
Confidence 668888899999999999999 99999988 899999999765
No 27
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.83 E-value=5.8e-19 Score=206.29 Aligned_cols=217 Identities=15% Similarity=0.121 Sum_probs=158.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce--EEEe----------------------------------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR--LWTI---------------------------------------- 58 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~--v~~~---------------------------------------- 58 (763)
..|.+++|+|+|++||+|+.|++|+||++ +++. ...+
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~ 139 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 139 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence 34999999999999999999999999998 3221 1111
Q ss_pred -----cCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 59 -----SPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 59 -----~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
.|...|++++|+|+++ .|++|+.|++|++||.++++..+.+.+|...|.+++|+|+++++++++ .|++
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s------~D~~ 213 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG------GDGT 213 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSC
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE------CCCc
Confidence 0334688888888886 599999999999999999999999999999999999999999999998 8999
Q ss_pred eeecCCCCCCC--CCCC---cccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeeccc--
Q 004298 133 SRFFPPAPRIP--QMPG---LVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKF-- 204 (763)
Q Consensus 133 i~~wd~~~~~~--~l~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~-- 204 (763)
+++||...... .+.. ...+|.. .+. ...+++++++|++|+.||+|++|+..... ...+..+..
T Consensus 214 i~lwd~~~g~~~~~~~~~~~~~~~h~~-------~V~--~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFEDDSLKNVAHSG-------SVF--GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSS-------CEE--EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred EEEEECCCCcEeeeeccccccccccCC-------CEE--EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 99999764211 1100 0002222 222 33456788899999999999999976532 222221110
Q ss_pred ---------ccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEE
Q 004298 205 ---------HVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLV 261 (763)
Q Consensus 205 ---------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ 261 (763)
.....+++.++.+++|+ ..|.+++|||||++|+.++.|+ .++++.
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~------------~v~~Wd 352 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG------------HINSWD 352 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------------CEEEEE
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC------------cEEEEE
Confidence 11123445667777775 4688999999999999888766 777777
Q ss_pred eecc
Q 004298 262 LDTS 265 (763)
Q Consensus 262 ld~~ 265 (763)
+...
T Consensus 353 ~~~~ 356 (611)
T 1nr0_A 353 ISTG 356 (611)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6544
No 28
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.82 E-value=5.6e-20 Score=200.20 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=143.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe---E
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK---L 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~---~ 95 (763)
.|.+++|+|++++||+++.|+.|++|++.. +.+..+. |...|.+++|+|+|++|++|+.||+|++||+++++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 499999999999999999999999999954 3444443 77899999999999999999999999999999877 6
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccC-CcccccCCcccccceecccCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSG-DTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~-~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
...+..|...|+++.|+|++..+++++ .|+.+++|+...... .......+ +.. .+..+ .++++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~h~~-------~v~~~--~~~~~ 157 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGS------GARVISVCYFEQENDWWVSKHLKRPLRS-------TILSL--DWHPN 157 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEE------SSSCEEECCC-----CCCCEEECSSCCS-------CEEEE--EECTT
T ss_pred eeEecccCCceEEEEECCCCCEEEEEe------cCCeEEEEEECCcccceeeeEeecccCC-------CeEEE--EEcCC
Confidence 777888999999999999999999998 899999999876321 01111111 222 22233 34567
Q ss_pred eeEEEEEcCCCcEEEEEcCce-------------------eee---------eeeecccccccccCCCCCceeeec----
Q 004298 174 FSILCSGDKDGSICFNIFGIF-------------------PIG---------KINIHKFHVAIPNADEQGTCRLLN---- 221 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~-------------------~ig---------~~~i~~~~~~~~s~~~~~~~~l~~---- 221 (763)
+++|++|+.||+|++|+.... .+. .+........+.+++.++.+++|+
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 789999999999999997411 111 111111111233556677777775
Q ss_pred --------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 --------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 --------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|.+++|+|||+.++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp TSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 2477888999888776664433
No 29
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.82 E-value=6.7e-19 Score=205.77 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=126.6
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|.+++|+|++. +||+++.|++|++|+. +++.+..+. |...|.+++|+|||++||+|+.||+|++||+.+++.+..
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 4599999999986 6999999999999998 455555554 788999999999999999999999999999999999988
Q ss_pred ec-------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCC---ccc--------CCc-----
Q 004298 99 LK-------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPG---LVS--------GDT----- 153 (763)
Q Consensus 99 l~-------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~---~~s--------~~~----- 153 (763)
+. +|...|.+++|+|+++.+++++ .|+++++||..... ..+.. ... +..
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s------~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASAS------ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEe------CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 84 7999999999999999999998 89999999986521 00000 000 000
Q ss_pred ----------------ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 154 ----------------GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 154 ----------------~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
....+....+. ...+++++++|++|+.||+|++|+...
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~--~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAIT--ALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEE--EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 00001111222 233567888999999999999998654
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=197.88 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=141.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-------------CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-------------WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-------------~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
..|.+++|+|+|.+|++++ |+++++|+.. +.......+...|.+++|+||+ .|++|+.||+|+||
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 4599999999999999887 6667666531 0011122234569999999996 67899999999999
Q ss_pred EccCCeEEEE----ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 89 DVENGKLLRS----LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 89 dve~g~~~~~----l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
|+++++.+.. ..+|...|++++|+|+++++++++ .|+++++||..... ......+|...+ .
T Consensus 109 d~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------~d~~i~iwd~~~~~--~~~~~~~h~~~V-------~ 173 (344)
T 4gqb_B 109 ELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------KDICIKVWDLAQQV--VLSSYRAHAAQV-------T 173 (344)
T ss_dssp EECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCSSCE-------E
T ss_pred eccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe------CCCeEEEEECCCCc--EEEEEcCcCCce-------E
Confidence 9998875543 448999999999999999999998 89999999987531 111122333222 2
Q ss_pred ceecccCCCe-eEEEEEcCCCcEEEEEcCceee-eeee------------eccccc-ccccCCCCCceeeec--------
Q 004298 165 ELANSSHQRF-SILCSGDKDGSICFNIFGIFPI-GKIN------------IHKFHV-AIPNADEQGTCRLLN-------- 221 (763)
Q Consensus 165 ~~~~~~~~~~-~~L~sgs~DG~I~lw~~~~~~i-g~~~------------i~~~~~-~~~s~~~~~~~~l~~-------- 221 (763)
.+. +++++ .+|++|+.||+|++|+...... ..+. .+.... -+.+++.++.+++|+
T Consensus 174 ~~~--~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 174 CVA--ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEE--ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred EEE--ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 233 33443 5899999999999998764321 1111 111011 124667889999997
Q ss_pred ------cceeeEEecCCCCE-EEEEeecC
Q 004298 222 ------ASIYKVALSKDLFH-LTVLCSGQ 243 (763)
Q Consensus 222 ------~~I~~v~~SpDg~~-Llv~~~d~ 243 (763)
..|.+++|||||.. |+.++.|+
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence 46899999999965 55555555
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.82 E-value=5.1e-19 Score=204.05 Aligned_cols=204 Identities=23% Similarity=0.317 Sum_probs=161.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..|.+++|+|+++++|+++.|+.|++|+.+++.+..+. |...|++++|+|||++|++|+.||.|++||. +++.+..+
T Consensus 344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~ 422 (577)
T 2ymu_A 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 422 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe
Confidence 345999999999999999999999999999988887775 7889999999999999999999999999995 68889999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|++++|+|+++.+++++ .|+++++|+...+ ......++... +. ...+++++++|++
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~------~d~~v~~w~~~~~---~~~~~~~~~~~-------v~--~~~~spd~~~las 484 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASAS------DDKTVKLWNRNGQ---LLQTLTGHSSS-------VR--GVAFSPDGQTIAS 484 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTSC---EEEEEECCSSC-------EE--EEEECTTSCEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEc------CCCEEEEEECCCC---EEEEEcCCCCC-------EE--EEEEcCCCCEEEE
Confidence 99999999999999999999998 8999999996532 11111222221 22 2345678889999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccc----------cccccCCCCCceeeec-------------cceeeEEecCCCCEE
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFH----------VAIPNADEQGTCRLLN-------------ASIYKVALSKDLFHL 236 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~----------~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~~L 236 (763)
++.||+|++|+.....+..+..|... ....+++.++.+++|+ ..|.+++|||||++|
T Consensus 485 ~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 485 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 99999999998655444444333221 1234667788899887 468889999999998
Q ss_pred EEEeecC
Q 004298 237 TVLCSGQ 243 (763)
Q Consensus 237 lv~~~d~ 243 (763)
++++.|+
T Consensus 565 ~s~~~D~ 571 (577)
T 2ymu_A 565 ASASSDK 571 (577)
T ss_dssp EEEETTS
T ss_pred EEEeCCC
Confidence 8877665
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.9e-19 Score=188.69 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=135.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEe--c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC---
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTI--S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN--- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~--~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~--- 92 (763)
+.|.+++|+|+ +||+|+.|++|++|++.. +.+..+ . |...|.+++|+|+|++||+|+.||+|+|||++.
T Consensus 15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence 34999999997 999999999999999954 233334 2 778999999999999999999999999999853
Q ss_pred ----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccce
Q 004298 93 ----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 93 ----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
.+.+..+.+|...|.+++|+|+++++++++ .|+++++||....... ......+|.. .+..+
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s------~D~~v~iwd~~~~~~~~~~~~~~~~h~~-------~v~~v 159 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS------RDKSVWIWETDESGEEYECISVLQEHSQ-------DVKHV 159 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEE------TTSCEEEEECCTTCCCCEEEEEECCCSS-------CEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe------CCCEEEEEeccCCCCCeEEEEEeccCCC-------ceEEE
Confidence 456788899999999999999999999998 8999999998532111 1111122222 22223
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCce---eeeeeeecccccccccCCCCCceeeeccceeeEEecCC--CCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIF---PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD--LFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~---~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpD--g~~Llv~~~ 241 (763)
.+++++++|++|+.||+|++|+...- .+..+ .-+.+.|.+++|+|+ +..++.++.
T Consensus 160 --~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 160 --IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL------------------NGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp --EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE------------------CCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred --EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc------------------cCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 34567789999999999999974321 11111 112246889999998 667777766
Q ss_pred cC
Q 004298 242 GQ 243 (763)
Q Consensus 242 d~ 243 (763)
|+
T Consensus 220 D~ 221 (330)
T 2hes_X 220 DS 221 (330)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.82 E-value=1.3e-18 Score=185.11 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=156.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
...|.+++|+|+++++++++.|+.|.+|++.. + ....+. +...|.+++|+|+|+++++|+.||.|++||+++++.+
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence 34599999999999999999999999999944 3 233333 6778999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
..+..|...|.++.|+|++..+++++ .|+.+++||....... ... .+ ...+. ...+++++++
T Consensus 177 ~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~--~~~-~~-------~~~v~--~~~~s~~~~~ 238 (337)
T 1gxr_A 177 RQFQGHTDGASCIDISNDGTKLWTGG------LDNTVRSWDLREGRQL--QQH-DF-------TSQIF--SLGYCPTGEW 238 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEE--EEE-EC-------SSCEE--EEEECTTSSE
T ss_pred eeeecccCceEEEEECCCCCEEEEEe------cCCcEEEEECCCCceE--eee-cC-------CCceE--EEEECCCCCE
Confidence 99999999999999999999999988 8999999998753110 000 00 11122 2334577889
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeeeccc----------ccccccCCCCCceeeec-------------cceeeEEecCCC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINIHKF----------HVAIPNADEQGTCRLLN-------------ASIYKVALSKDL 233 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i~~~----------~~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg 233 (763)
+++|+.||.|++|+...........+.. .....+++.++.+++|+ ..|.+++|+||+
T Consensus 239 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred EEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC
Confidence 9999999999999876544332222111 11123555677888886 467888999999
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
+++++++.++
T Consensus 319 ~~l~~~~~dg 328 (337)
T 1gxr_A 319 KYIVTGSGDK 328 (337)
T ss_dssp CEEEEEETTS
T ss_pred CEEEEecCCC
Confidence 8888877665
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.82 E-value=8e-19 Score=188.97 Aligned_cols=213 Identities=14% Similarity=0.191 Sum_probs=154.4
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPE----KDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~----~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g 93 (763)
...|.+++|+|+ +.++++++.||.|++|++ +++.+..+. |...|++++|+| ++++|++|+.||.|++||++++
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 356999999999 679999999999999999 677777776 888999999999 9999999999999999999999
Q ss_pred eEEEEe---cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCC-------------c-ccC---
Q 004298 94 KLLRSL---KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPG-------------L-VSG--- 151 (763)
Q Consensus 94 ~~~~~l---~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~-------------~-~s~--- 151 (763)
+.+..+ ..|...|.++.|+|++..+++++ .|+.+++||....... +.. . ...
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG------MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEE------TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEec------CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 999988 68999999999999999999998 8999999998742000 000 0 000
Q ss_pred CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee---------------eeeeeeccc------------
Q 004298 152 DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP---------------IGKINIHKF------------ 204 (763)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~---------------ig~~~i~~~------------ 204 (763)
...........+..+.+. ++++++++.||.|++|+..... +..+..+..
T Consensus 223 ~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL----GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp SEEECSSCSSCCCEEEEE----TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred ccccccCCcceEEEEEEc----CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 000000011222333332 4588888999999999865421 222221111
Q ss_pred ccccccCCCCCceeeec--------------------cceeeEEecCCCCEEEEEeecC
Q 004298 205 HVAIPNADEQGTCRLLN--------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 205 ~~~~~s~~~~~~~~l~~--------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
...+.+++.++.+++|+ ..|.+++|+|||+.|++++.|+
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 11123455677777775 3578899999999999887765
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.81 E-value=1.9e-18 Score=190.41 Aligned_cols=197 Identities=21% Similarity=0.214 Sum_probs=150.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++++.|++|++|++ +++....+.+...+.+++|+| +|++|++|+.||.|++||+++++.+..+
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence 45999999999999999999999999999 667777777888899999999 9999999999999999999999988777
Q ss_pred -------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC----------CcccCCcccccCCccc
Q 004298 100 -------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP----------GLVSGDTGFTDDSEDS 162 (763)
Q Consensus 100 -------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~----------~~~s~~~~~~~~~~~~ 162 (763)
.+|...|.+++|+|++..+++++ .|+++++||......... ....+|...
T Consensus 246 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s------~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~------- 312 (393)
T 1erj_A 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGS------LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF------- 312 (393)
T ss_dssp C------CCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEEC---------------CEEEEEECCSSC-------
T ss_pred cccccCCCCCCCCEEEEEECCCCCEEEEEe------CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc-------
Confidence 57889999999999999999998 899999999875311100 001122221
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecC------CCCE
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK------DLFH 235 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp------Dg~~ 235 (763)
+ ....+++++.+|++|+.||.|++|+..... +..+ +.+...|.+++|++ +++.
T Consensus 313 v--~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l------------------~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 313 V--LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML------------------QGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp E--EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE------------------ECCSSCEEEEEECSSCTTCTTCEE
T ss_pred E--EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE------------------CCCCCCEEEEEecCCcCcCCCCCE
Confidence 1 233455777899999999999999865432 1222 11224577888775 6788
Q ss_pred EEEEeecCccccccCCCCCCcEEEEEee
Q 004298 236 LTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 236 Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
++.++.|+ .++++.+.
T Consensus 373 l~sgs~Dg------------~i~iW~~~ 388 (393)
T 1erj_A 373 FATGSGDC------------KARIWKYK 388 (393)
T ss_dssp EEEEETTS------------EEEEEEEE
T ss_pred EEEECCCC------------cEEECccc
Confidence 88777665 77777665
No 36
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.9e-18 Score=184.59 Aligned_cols=200 Identities=20% Similarity=0.130 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|++++||+++.||.|++|++ +++.+..+. |...|.+++|+|+|++|++++.||.|++||+++++.+..+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 34999999999999999999999999998 777777776 7889999999999999999999999999999999999988
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcc-cC-CcccccCCcc--cccceecccCCCee
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV-SG-DTGFTDDSED--SFRELANSSHQRFS 175 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~-s~-~~~~~~~~~~--~~~~~~~~~~~~~~ 175 (763)
. |...|.++.|+|++..+++++.+. ...++.+++|+............ .. .......... .+. ...++++++
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 188 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT--VAGWSTKGK 188 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE--EEEECGGGC
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee--EEEEcCCCC
Confidence 7 789999999999999998886110 01239999998765321110000 00 0000000000 222 233456788
Q ss_pred EEEEEcCCCcEEEEEcCc--eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKDGSICFNIFGI--FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~--~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+++|+.||.|++|+... .....+. .....|.+++|+||++.+++++.++
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSID------------------LHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEE------------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEe------------------cCCCceeEEEECCCCCEEEEecCCc
Confidence 999999999999999765 2222222 1224688999999999999888776
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.81 E-value=1.3e-18 Score=188.25 Aligned_cols=214 Identities=12% Similarity=0.097 Sum_probs=157.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.|.+++|+|+++++|+++.|+.|++|++... .+..+. |...|++++|+|+|++|++|+.||.|++||+++++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 3999999999999999999999999999554 566664 788999999999999999999999999999999876554
Q ss_pred --ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCCe
Q 004298 99 --LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 99 --l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+..|...|.++.|+|++..+++++ .|+.+++|+....... ......++. ..+..+ .+++++
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~~~~~~~~-------~~i~~~--~~~~~~ 154 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGS------GSRVISICYFEQENDWWVCKHIKKPIR-------STVLSL--DWHPNS 154 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEE------TTSSEEEEEEETTTTEEEEEEECTTCC-------SCEEEE--EECTTS
T ss_pred EEeecCCCceeEEEECCCCCEEEEEe------CCCEEEEEEecCCCcceeeeeeecccC-------CCeeEE--EEcCCC
Confidence 367889999999999999999998 8999999998753210 000001111 122233 345677
Q ss_pred eEEEEEcCCCcEEEEEcCc-------------------eeeeeeeec----------ccccccccCCCCCceeeec----
Q 004298 175 SILCSGDKDGSICFNIFGI-------------------FPIGKINIH----------KFHVAIPNADEQGTCRLLN---- 221 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~-------------------~~ig~~~i~----------~~~~~~~s~~~~~~~~l~~---- 221 (763)
+++++|+.||.|++|+... ..+..+..+ .....+.+++.++.+++|+
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 8999999999999999531 112222111 1111234566788888887
Q ss_pred ----------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 ----------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
.+|.+++|+||++.++++ .++ .++++.++.
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~------------~i~i~~~~~ 274 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDC------------FPVLFTYDS 274 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTS------------SCEEEEEET
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCC------------eEEEEEccC
Confidence 368899999998876655 444 667777665
No 38
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.81 E-value=3.4e-18 Score=183.99 Aligned_cols=215 Identities=13% Similarity=0.228 Sum_probs=154.2
Q ss_pred CCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcc--CceE-EEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPE---KDLLAMATEDSKILLHRFN--WQRL-WTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~---~~lLA~~s~Dg~V~v~~l~--~~~v-~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.+.|.+++|+|+ +++||+++.||.|++|++. ++.+ ..+. |...|++++|+|+|++|++|+.||.|++||++++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 456999999999 6999999999999999994 5554 3333 7889999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEe--ecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc-----------c----
Q 004298 94 KLLRSLKSHTVAVVCLNW--EEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF-----------T---- 156 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~w--s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~-----------~---- 156 (763)
+.+. +..|...|+++.| ++++..+++++ .|+.+++||....... .....+... .
T Consensus 119 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 3mmy_A 119 QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS------WDKTLKFWDTRSSNPM--MVLQLPERCYCADVIYPMAVVATAE 189 (368)
T ss_dssp EEEE-EEECSSCEEEEEEEECSSCEEEEEEE------TTSEEEEECSSCSSCS--EEEECSSCEEEEEEETTEEEEEEGG
T ss_pred Ccee-eccccCceEEEEEEeCCCCCEEEEcc------CCCcEEEEECCCCcEE--EEEecCCCceEEEecCCeeEEEeCC
Confidence 8776 4579999999999 88999899988 8999999998753111 000000000 0
Q ss_pred -------------------cCCccccccee--cccCCCeeEEEEEcCCCcEEEEEcCcee--------------------
Q 004298 157 -------------------DDSEDSFRELA--NSSHQRFSILCSGDKDGSICFNIFGIFP-------------------- 195 (763)
Q Consensus 157 -------------------~~~~~~~~~~~--~~~~~~~~~L~sgs~DG~I~lw~~~~~~-------------------- 195 (763)
.........+. .......+.+++|+.||.|++|++....
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 00000001111 1111123449999999999999876531
Q ss_pred ------eeeeeecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCc
Q 004298 196 ------IGKINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 196 ------ig~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l 244 (763)
+..+..+.....+.+++.++.+++|+ .+|.+++|+|||++|++++.++.
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 11222222122344677889999997 46899999999999999988763
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.81 E-value=1.8e-18 Score=183.92 Aligned_cols=204 Identities=11% Similarity=0.058 Sum_probs=151.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEEe---cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWTI---SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~~---~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.+++|+|+++++++++ ||.|++|++.. + .+..+ .+...|.+++|+|+|++|++|+.||.|++||+++++
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 4499999999999999998 99999999942 2 22222 477899999999999999999999999999999887
Q ss_pred --EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 95 --LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 95 --~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
....+..|...|.++.|+|++..+++++ .|+.+++||..... ......++. ..+..+ .+++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~--~~~~~~~~~-------~~i~~~--~~~~ 193 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCC------SDGNIAVWDLHNQT--LVRQFQGHT-------DGASCI--DISN 193 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCS-------SCEEEE--EECT
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCc--eeeeeeccc-------CceEEE--EECC
Confidence 6677888999999999999999999988 89999999987531 111111121 122223 3456
Q ss_pred CeeEEEEEcCCCcEEEEEcCceee-eeee---------ecccccccccCCCCCceeeec-------------cceeeEEe
Q 004298 173 RFSILCSGDKDGSICFNIFGIFPI-GKIN---------IHKFHVAIPNADEQGTCRLLN-------------ASIYKVAL 229 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~~i-g~~~---------i~~~~~~~~s~~~~~~~~l~~-------------~~I~~v~~ 229 (763)
+++.+++++.||.|++|+...... ..+. ..........++.++.+++|+ ..|.+++|
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~ 273 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEE
Confidence 778999999999999998765322 2221 111111123445667788776 46889999
Q ss_pred cCCCCEEEEEeecC
Q 004298 230 SKDLFHLTVLCSGQ 243 (763)
Q Consensus 230 SpDg~~Llv~~~d~ 243 (763)
+||++++++++.++
T Consensus 274 ~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 274 AYCGKWFVSTGKDN 287 (337)
T ss_dssp CTTSSEEEEEETTS
T ss_pred CCCCCEEEEecCCC
Confidence 99999998887766
No 40
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.81 E-value=2.1e-18 Score=198.88 Aligned_cols=204 Identities=23% Similarity=0.305 Sum_probs=162.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
...|.+++|+|+++++++++.|+.|++|+.+++.+..+. |...|.+++|+|||++|++|+.||.|++||. +++.+..+
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~ 381 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 381 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEe
Confidence 345999999999999999999999999999888877765 7789999999999999999999999999995 68889999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..|...|++++|+|+++++++++ .|+.+++|+.... ......++... +. ...+++++.+|++
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~------~d~~v~~~~~~~~---~~~~~~~~~~~-------v~--~~~~s~d~~~l~~ 443 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASAS------DDKTVKLWNRNGQ---LLQTLTGHSSS-------VW--GVAFSPDDQTIAS 443 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEE------TTSEEEEECTTCC---EEEEEECCSSC-------EE--EEEECTTSSEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEe------CCCEEEEEeCCCC---EEEEecCCCCC-------eE--EEEECCCCCEEEE
Confidence 99999999999999999999998 8999999996432 11111222222 22 2335577789999
Q ss_pred EcCCCcEEEEEcCceeeeeeeeccccc----------ccccCCCCCceeeec-------------cceeeEEecCCCCEE
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHV----------AIPNADEQGTCRLLN-------------ASIYKVALSKDLFHL 236 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~----------~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~~L 236 (763)
++.||+|++|+........+..+.... ...+++.++.+++|+ .+|.+++|||||++|
T Consensus 444 ~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 444 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 999999999986654444433322211 123566788899986 468999999999999
Q ss_pred EEEeecC
Q 004298 237 TVLCSGQ 243 (763)
Q Consensus 237 lv~~~d~ 243 (763)
++++.|+
T Consensus 524 ~s~~~dg 530 (577)
T 2ymu_A 524 ASASDDK 530 (577)
T ss_dssp EEEETTS
T ss_pred EEEECcC
Confidence 9888776
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.80 E-value=8.7e-19 Score=193.50 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=154.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|.+++|+|++++|++++.|+.|++|++ +++.+..+. |...|.+++|+|||++|++|+.||.|++||+++++.+..
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 456999999999999999999999999999 666676665 788999999999999999999999999999999999998
Q ss_pred eccc---CCce---------------------eEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcc
Q 004298 99 LKSH---TVAV---------------------VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTG 154 (763)
Q Consensus 99 l~~h---~~~V---------------------~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~ 154 (763)
+..| ...| .++.|+|++..+++++ .|+.+++||........ ....++.
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~-~~~~~~~- 290 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH------VSGVITVHNVFSKEQTI-QLPSKFT- 290 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE------TTSCEEEEETTTCCEEE-EECCTTS-
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc------CCCeEEEEECCCCceeE-EcccccC-
Confidence 8753 3344 4455577888888887 89999999987531110 0001111
Q ss_pred cccCCcccccceecccCCCee-EEEEEcCCCcEEEEEcCce--eeeeeeec-ccc---------cccccCCCCCceeeec
Q 004298 155 FTDDSEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIF--PIGKINIH-KFH---------VAIPNADEQGTCRLLN 221 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~--~ig~~~i~-~~~---------~~~~s~~~~~~~~l~~ 221 (763)
..+..+ .+++++. +|++|+.||.|++|+.... ++..+..+ ..+ ..+.+++.++.+++|+
T Consensus 291 ------~~v~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 291 ------CSCNSL--TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp ------SCEEEE--EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred ------CCceeE--EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 122223 3456666 9999999999999987653 23333331 111 1234677889999997
Q ss_pred -----------------------cceeeEEecCCCC---EEEEEeecC
Q 004298 222 -----------------------ASIYKVALSKDLF---HLTVLCSGQ 243 (763)
Q Consensus 222 -----------------------~~I~~v~~SpDg~---~Llv~~~d~ 243 (763)
..|.+++|+||++ .+++++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 2477899999999 788877655
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.80 E-value=3.1e-18 Score=182.81 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=160.7
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEccC-c-----eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFNW-Q-----RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~-~-----~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|++++|+|+ +++||+|+.|++|+||++.. + ....+. |...|.+++|+|||++|++|+.||.|++|+...+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence 45999999998 68999999999999999832 2 233333 7789999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC---CCCCccc----------CCcc-ccc--
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP---QMPGLVS----------GDTG-FTD-- 157 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~---~l~~~~s----------~~~~-~~~-- 157 (763)
........+...+..+.+++++..+++++ .|+.+++||...... ....+.. +... +..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGS------RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ceeeeecCCCCceeEEEEeecCccceeec------CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 98888888889999999999999999988 899999998754210 0000000 0000 000
Q ss_pred --------------------CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeeccc--------cccc
Q 004298 158 --------------------DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKF--------HVAI 208 (763)
Q Consensus 158 --------------------~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~--------~~~~ 208 (763)
.....+. ...+++++++|++|+.||+|++|+...... ..+..+.. ....
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLN--TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEE--EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEE--EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCce
Confidence 0001111 223467788999999999999998765422 22221110 0122
Q ss_pred ccCCCCCceeeec-----------------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 209 PNADEQGTCRLLN-----------------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 209 ~s~~~~~~~~l~~-----------------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.+++.++.+++|+ ..|.+++|||||++|++++.|+ .|+++.+.+.
T Consensus 271 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg------------~v~iW~~~tG 338 (340)
T 4aow_A 271 LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN------------LVRVWQVTIG 338 (340)
T ss_dssp EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS------------CEEEEEEEC-
T ss_pred eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC------------EEEEEeCCCc
Confidence 3445677888886 3588999999999999888766 7888877653
No 43
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.80 E-value=9.2e-19 Score=210.53 Aligned_cols=206 Identities=11% Similarity=0.096 Sum_probs=159.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|||+++++|+++.||.|.||++ +++.+..+. |...|++++|+|||++|++|+.||.|++||+.+++.+..+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 34999999999999999999999999998 666777766 7889999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-CeeEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ 178 (763)
.+|...|++++|+|+++.+++++ .|+.+++|+...... ......++... +.. ..+++ +++.++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~~~-~~~~~~~~~~~-------v~~--~~~~p~~~~~l~ 157 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWA-LEQTFEGHEHF-------VMC--VAFNPKDPSTFA 157 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEE------TTSEEEEEEGGGTSE-EEEEEECCSSC-------EEE--EEEETTEEEEEE
T ss_pred ecCCCCEEEEEEeCCCCEEEEEc------CCCEEEEEECCCCce-EEEEEcCCCCc-------EEE--EEEEcCCCCEEE
Confidence 99999999999999999999988 899999999764211 11111122221 222 23445 678999
Q ss_pred EEcCCCcEEEEEcCcee-eeeeee-----------cc--cccccccCCCCCceeeec--------------cceeeEEec
Q 004298 179 SGDKDGSICFNIFGIFP-IGKINI-----------HK--FHVAIPNADEQGTCRLLN--------------ASIYKVALS 230 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~-ig~~~i-----------~~--~~~~~~s~~~~~~~~l~~--------------~~I~~v~~S 230 (763)
+|+.||+|++|+.+... ...+.. .. ......+++.++.+++|+ ..|.+++|+
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99999999999865321 111111 10 111233566778888886 468899999
Q ss_pred CCCCEEEEEeecC
Q 004298 231 KDLFHLTVLCSGQ 243 (763)
Q Consensus 231 pDg~~Llv~~~d~ 243 (763)
|+|+.+++++.++
T Consensus 238 ~~~~~l~~~~~dg 250 (814)
T 3mkq_A 238 PTLPIIISGSEDG 250 (814)
T ss_dssp SSSSEEEEEETTS
T ss_pred CCCCEEEEEeCCC
Confidence 9999998887765
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.80 E-value=2e-19 Score=195.85 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=136.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC------CCeEEEEEc-cCceE-----EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATE------DSKILLHRF-NWQRL-----WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~------Dg~V~v~~l-~~~~v-----~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..|.+++|||||.+||+++. |+.|++|+. ++... ....|...|.+++|+||+++ ++++.||+|+|||
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd 121 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWE 121 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEee
Confidence 34999999999999999997 778999987 33322 22346778999999999865 4678899999999
Q ss_pred ccCCeEEE----EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 90 VENGKLLR----SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 90 ve~g~~~~----~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
+.+++... ...+|...|++++|+|+++++++++ .|+++++||..... ......++... +..
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------~dg~v~iwd~~~~~--~~~~~~~h~~~-------v~~ 186 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------KDFSVKVWDLSQKA--VLKSYNAHSSE-------VNC 186 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECSSSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCSSC-------EEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe------CCCeEEEEECCCCc--EEEEEcCCCCC-------EEE
Confidence 99887543 3347899999999999999999998 89999999987531 11111222222 223
Q ss_pred eecccCCCe-eEEEEEcCCCcEEEEEcCceee-ee------------eeeccc-ccccccCCCCCceeeec---------
Q 004298 166 LANSSHQRF-SILCSGDKDGSICFNIFGIFPI-GK------------INIHKF-HVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 166 ~~~~~~~~~-~~L~sgs~DG~I~lw~~~~~~i-g~------------~~i~~~-~~~~~s~~~~~~~~l~~--------- 221 (763)
+.+ ++++ .++++++.||+|++|+...... .. +..+.. ..-+.+++.++.+++|+
T Consensus 187 v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 187 VAA--CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEE--CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred EEE--ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 333 3333 4789999999999998654211 11 111110 11123566788899987
Q ss_pred -----cceeeEEecCCCCE-EEEEeecC
Q 004298 222 -----ASIYKVALSKDLFH-LTVLCSGQ 243 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~-Llv~~~d~ 243 (763)
..|.+++|||++.. |+.++.|+
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 46899999999865 55555555
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.80 E-value=2e-18 Score=204.65 Aligned_cols=193 Identities=16% Similarity=0.135 Sum_probs=147.4
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC-c-----eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRFNW-Q-----RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~-~-----~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.+.|++++|+|++ ++|++|+.|++|++|++.. . ....+ .|...|.+++|+|||++|++|+.||+|+|||+.+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 3459999999975 8999999999999999842 1 12223 3788999999999999999999999999999999
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
++.++.+.+|...|.+++|+|++..+++++ .|+++++||...... .+.....+|.. .+..+.+.++
T Consensus 462 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~D~~i~iwd~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~ 528 (694)
T 3dm0_A 462 GVSTRRFVGHTKDVLSVAFSLDNRQIVSAS------RDRTIKLWNTLGECKYTISEGGEGHRD-------WVSCVRFSPN 528 (694)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSCEEEECTTSCEEEEECSSTTSCSS-------CEEEEEECSC
T ss_pred CcceeEEeCCCCCEEEEEEeCCCCEEEEEe------CCCEEEEEECCCCcceeeccCCCCCCC-------cEEEEEEeCC
Confidence 999999999999999999999999999998 899999999754210 01111112222 2333444444
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.....+++|+.||+|++|+......... +.-+.+.|.+++|||||+.+++++.|+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~-----------------~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRST-----------------LAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEE-----------------ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEE-----------------EcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 4446899999999999999765322111 111234688999999999998888776
No 46
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.80 E-value=3e-18 Score=187.21 Aligned_cols=213 Identities=12% Similarity=0.049 Sum_probs=158.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.+.|.+++|+| +++++++++.|+.|++|++.++.+..+. +...|.+++|+|+|++|++|+.||.|++||+ +++.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 35599999999 7899999999999999999877766664 3367999999999999999999999999999 5888
Q ss_pred EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+..+..|...|.+++|+|++. .+++++ .|+.+++||....... .... .++. ..+..+ .+++
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~-~~~~-------~~v~~~--~~s~ 260 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSS------VDATVKLWDLRNIKDKNSYIAE-MPHE-------KPVNAA--YFNP 260 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEE------TTSEEEEEEGGGCCSTTCEEEE-EECS-------SCEEEE--EECT
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEe------CCCEEEEEeCCCCCcccceEEE-ecCC-------CceEEE--EEcC
Confidence 999999999999999999998 888888 8999999998752111 1000 0121 122223 3456
Q ss_pred -CeeEEEEEcCCCcEEEEEcCceee-eeeeeccc--------------------------ccccccCCCCCceeeec---
Q 004298 173 -RFSILCSGDKDGSICFNIFGIFPI-GKINIHKF--------------------------HVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 173 -~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~--------------------------~~~~~s~~~~~~~~l~~--- 221 (763)
++++|++++.||.|++|+...... ..+..+.. .... +++.++.+++|+
T Consensus 261 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANS 339 (383)
T ss_dssp TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCC
Confidence 778999999999999998764321 11111100 0011 456788899997
Q ss_pred -------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
..+..++|+|||+.|++++ |+ .++++.++.
T Consensus 340 ~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~------------~i~iw~~~~ 382 (383)
T 3ei3_B 340 GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF------------NILIWNRED 382 (383)
T ss_dssp CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT------------EEEEEECC-
T ss_pred CceeeeecCCCCCceEEEEEEecCccEEEEec-CC------------cEEEEecCC
Confidence 1245569999999888774 54 677777653
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.80 E-value=6.4e-18 Score=178.52 Aligned_cols=212 Identities=18% Similarity=0.255 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..+++|||++ +||+|. |++|+||++ +++.+..+. |+..|++++|+|+|++|++|+.||+|++||+++++.++.+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999875 788765 899999999 677665553 6778999999999999999999999999999999888776
Q ss_pred cccC-----------------------------------------CceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 100 KSHT-----------------------------------------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 100 ~~h~-----------------------------------------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.+|. ..+.++.|.+++..+++++ .|+++++||.
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~ 179 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG------NDNLVNVWPS 179 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEES
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe------cCcceeEEEC
Confidence 6544 4455555666666666665 7899999988
Q ss_pred CCCCCCCC--CcccCCcccccCCcccccceeccc-CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccc----------
Q 004298 139 APRIPQMP--GLVSGDTGFTDDSEDSFRELANSS-HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFH---------- 205 (763)
Q Consensus 139 ~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~---------- 205 (763)
........ .....+. ..+..+.+.. ....-.+++|+.+++|++|+...........+...
T Consensus 180 ~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQ-------GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 252 (318)
T ss_dssp SCBTTBSCCSEEECCCC-------SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTT
T ss_pred CCCcccccceeeecccC-------CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccc
Confidence 75321111 0001111 1112222222 23344556788899999998665433222211111
Q ss_pred cc--cccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEe
Q 004298 206 VA--IPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVL 262 (763)
Q Consensus 206 ~~--~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~l 262 (763)
.. ..++..++.+++|+ +.|.+++|||||++|+.++.|+ .|+++.+
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~------------~v~iWd~ 313 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE------------TLRLWRC 313 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT------------EEEEECC
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC------------eEEEEEC
Confidence 01 12345678888886 5799999999999999888776 6777754
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.80 E-value=7.1e-19 Score=192.14 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=146.1
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMAT--EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..+.+++|||||+++|+++ .|++|+||++ +++.+..+.|...|.+++|+|||+++++++.| .+++|+..+++.+..
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIAR 212 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceee
Confidence 3488999999999987655 6899999999 77888888888999999999999999999855 566677777766543
Q ss_pred --ecccCCceeEEEeecCCCceeccCCCCCcccCC----ceeecCCCCCCCCCC--CcccCCcccccCCcccccceeccc
Q 004298 99 --LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR----TSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 99 --l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~----~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
...|...|.+++|+|++..+++++ .++ .++.|+......... ....++.. .+ ...++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~V--~~~~~ 277 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAAS------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-------GI--TSMDV 277 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEE------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-------CE--EEEEE
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEe------cCCcceeEEeecccccceecceeeeeecCCCC-------Ce--EeEEE
Confidence 456888999999999999998886 444 466777653211100 01112211 12 23346
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCcccccc
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEEL 249 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~ 249 (763)
++++++|++|+.||+|++|+..... +..+. +.+..+|.+++|||||++|+.++.|+
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-----------------~gH~~~V~~v~fSpdg~~laS~S~D~------ 334 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFK-----------------QAHSFAITEVTISPDSTYVASVSAAN------ 334 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEET-----------------TSSSSCEEEEEECTTSCEEEEEETTS------
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEec-----------------CcccCCEEEEEECCCCCEEEEEeCCC------
Confidence 6888999999999999999976543 22220 11234699999999999999988776
Q ss_pred CCCCCCcEEEEEeecc
Q 004298 250 GGHGMHGLHCLVLDTS 265 (763)
Q Consensus 250 ~~~~~~~l~~~~ld~~ 265 (763)
.|+++.+..+
T Consensus 335 ------tvrvw~ip~~ 344 (365)
T 4h5i_A 335 ------TIHIIKLPLN 344 (365)
T ss_dssp ------EEEEEECCTT
T ss_pred ------eEEEEEcCCC
Confidence 7888877544
No 49
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.79 E-value=1.4e-18 Score=194.22 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=137.5
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-Cce--EEEe-cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN-WQR--LWTI-SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-~~~--v~~~-~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|++++|||+ +++||+|+.||.|+||++. ++. +..+ .|...|++++|+| ||++|++|+.||+|++||++++..
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 35999999994 5799999999999999993 332 3333 3788999999998 799999999999999999986654
Q ss_pred EEEecc--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 96 LRSLKS--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 96 ~~~l~~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
...... +...+.+++|+|++.++++|+ .|+.+++||...+. .....+|.. .+..+. +++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~------~dg~i~~wd~~~~~---~~~~~~h~~-------~v~~v~--~~p~ 261 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGD------NVGNVILLNMDGKE---LWNLRMHKK-------KVTHVA--LNPC 261 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEEC------SSSBEEEEESSSCB---CCCSBCCSS-------CEEEEE--ECTT
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEe------CCCcEeeeccCcce---eEEEecccc-------eEEeee--ecCC
Confidence 333332 335688999999999999998 89999999986531 111222322 222333 3344
Q ss_pred e-eEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 174 F-SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 174 ~-~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+ .++++|+.||+|++|+......... . ....-+..+|.+++|||||++|++++.|+
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~--------~------~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKAS--------F------LYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSC--------C------SBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred CceEEEEecCcceeeEEecccccccce--------E------EEeeeccccccceeECCCCCeeEEEcCCC
Confidence 3 4899999999999998654321110 0 00011234688999999999999988876
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.79 E-value=2.4e-18 Score=192.22 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=123.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.+++|+| ++++|++++.||+|++|++.++.+..+. +...+.+++|+|+|++|++|+.||.|++||++ ++.+
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~ 243 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL 243 (435)
T ss_dssp CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee
Confidence 4599999999 6899999999999999999776655443 23457899999999999999999999999986 5667
Q ss_pred EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCC-CCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+.+|...|++++|+|++. ++++++ .|+++++||.+...... .....+|... + ...++++++
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~-------v--~~~~~spdg 308 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATAS------VDQTVKIWDLRQVRGKASFLYSLPHRHP-------V--NAACFSPDG 308 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEE------TTSBCCEEETTTCCSSSCCSBCCBCSSC-------E--EECCBCTTS
T ss_pred EEEecccceEEeeeecCCCceEEEEec------CcceeeEEecccccccceEEEeeecccc-------c--cceeECCCC
Confidence 78899999999999999986 567777 89999999987532111 1111122222 2 223456788
Q ss_pred eEEEEEcCCCcEEEEEcCce
Q 004298 175 SILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~ 194 (763)
++|++|+.||+|++|+....
T Consensus 309 ~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 309 ARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp SEEEEEESSSCEEEEESSSS
T ss_pred CeeEEEcCCCEEEEEECCCC
Confidence 89999999999999987653
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.79 E-value=3.5e-18 Score=202.61 Aligned_cols=212 Identities=14% Similarity=0.107 Sum_probs=154.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++|+.||+|+||++ +++.+..+. |...|.+++|+|||++|++|+.||+|++||..........
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 45999999999999999999999999999 566666654 8889999999999999999999999999998654333222
Q ss_pred ---cccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 100 ---KSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 100 ---~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
.+|...|.|+.|+|++ ..+++++ .|+++++||.... .+.....+|...+ ....+++++
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~d~~v~vwd~~~~--~~~~~~~~h~~~v---------~~v~~spdg 573 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSAS------WDKTVKVWNLSNC--KLRSTLAGHTGYV---------STVAVSPDG 573 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEE------TTSCEEEEETTTC--CEEEEECCCSSCE---------EEEEECTTS
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEe------CCCeEEEEECCCC--cEEEEEcCCCCCE---------EEEEEeCCC
Confidence 4688899999999987 4688887 8999999998753 1112223333322 233456788
Q ss_pred eEEEEEcCCCcEEEEEcCcee-eeeeeecc----cc----cccccCCCCCceeeecc-----------------------
Q 004298 175 SILCSGDKDGSICFNIFGIFP-IGKINIHK----FH----VAIPNADEQGTCRLLNA----------------------- 222 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~----~~----~~~~s~~~~~~~~l~~~----------------------- 222 (763)
++|++|+.||+|++|+..... +..+..+. .. ......+.+..+++|+.
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccccccc
Confidence 899999999999999875432 11111110 00 01112234556788862
Q ss_pred ----------ceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEe
Q 004298 223 ----------SIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVL 262 (763)
Q Consensus 223 ----------~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~l 262 (763)
.+.+++|||||++|++++.|+ .|+++.+
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg------------~i~iW~i 691 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDG------------VIRVWGI 691 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTS------------EEEEEEC
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCC------------eEEEEec
Confidence 156789999999999888776 6777654
No 52
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.2e-18 Score=194.34 Aligned_cols=184 Identities=14% Similarity=0.168 Sum_probs=135.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-----cEEEEEEccCCCEEEEEEcCCcEEEEEccCCe--
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGK-- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-----~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~-- 94 (763)
..|.+++|||+|++||+++.||.|++|+..+ .+..+.|.. .|.+++|||||++||+|+.||+|+|||+.+++
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 4599999999999999999999999999654 444444333 59999999999999999999999999999885
Q ss_pred -----EEEEe----cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC-CCCcc-cCCcccccCCcccc
Q 004298 95 -----LLRSL----KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ-MPGLV-SGDTGFTDDSEDSF 163 (763)
Q Consensus 95 -----~~~~l----~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~-l~~~~-s~~~~~~~~~~~~~ 163 (763)
.+.++ .+|.+.|.+++|+|+| +++++ .|+++++|+....... ..... .++. ..+
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass------~D~tVrlWd~~~~~~~~~~~tL~~~h~-------~~V 229 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL------SNNSVFSMTVSASSHQPVSRMIQNASR-------RKI 229 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE------TTCCEEEECCCSSSSCCCEEEEECCCS-------SCC
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEe------CCCeEEEEECCCCccccceeeeccccc-------CcE
Confidence 36776 6777899999999999 55555 6999999998764311 00001 1222 223
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe--cCCCCEEEEEee
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL--SKDLFHLTVLCS 241 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~--SpDg~~Llv~~~ 241 (763)
..+.+. +++|++++ +|+|++|+......-.... -+.+.|..++| |||++.++++..
T Consensus 230 ~svaFs----g~~LASa~-~~tIkLWd~~~~~~~~~~~-----------------gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 230 TDLKIV----DYKVVLTC-PGYVHKIDLKNYSISSLKT-----------------GSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp CCEEEE----TTEEEEEC-SSEEEEEETTTTEEEEEEC-----------------SCCSCCCEEEETTCSSCEEEEECSS
T ss_pred EEEEEE----CCEEEEEe-CCeEEEEECCCCeEEEEEc-----------------CCCceEEEEEeeeCCCCCEEEEEcC
Confidence 334443 36888887 6999999966544322211 01245788999 999988887765
Q ss_pred cC
Q 004298 242 GQ 243 (763)
Q Consensus 242 d~ 243 (763)
++
T Consensus 288 dG 289 (588)
T 2j04_A 288 TS 289 (588)
T ss_dssp CE
T ss_pred CC
Confidence 54
No 53
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-18 Score=206.60 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=156.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCCe-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENGK- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g~- 94 (763)
+.|.+++|+|+++++|+|+.||.|+||++. ++.+..+. |...|++++|+|+ |++|++|+.||.|++||+.+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 349999999999999999999999999994 33444554 7889999999998 9999999999999999999987
Q ss_pred -EEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 -LLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 -~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+..|...|+++.|+|+ +..+++++ .|+.+++||.............++.. .+..+.+.+.
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs------~dg~I~vwdl~~~~~~~~~~~~~~~~-------~v~~l~~~p~ 156 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVAS------SDGKVSVVEFKENGTTSPIIIDAHAI-------GVNSASWAPA 156 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEECCSSSCCCCEEEECCSS-------CEEEEEECCC
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEe------CCCcEEEEEeecCCCcceeEeecCCC-------ceEEEEecCc
Confidence 77788899999999999999 89999998 89999999987642221111122221 2223333221
Q ss_pred -----------CCeeEEEEEcCCCcEEEEEcCce-----eeeeee----------eccc---ccccccCCCCCceeeec-
Q 004298 172 -----------QRFSILCSGDKDGSICFNIFGIF-----PIGKIN----------IHKF---HVAIPNADEQGTCRLLN- 221 (763)
Q Consensus 172 -----------~~~~~L~sgs~DG~I~lw~~~~~-----~ig~~~----------i~~~---~~~~~s~~~~~~~~l~~- 221 (763)
++++++++|+.||+|++|+.... ....+. .+.. ...+.+++.++.+++|+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 15788999999999999976432 111111 1111 12234667788888886
Q ss_pred ------------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|||+++++++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 3477899999999999887766
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.78 E-value=7.2e-18 Score=185.85 Aligned_cols=187 Identities=14% Similarity=0.207 Sum_probs=144.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-C-------ceEEEec-CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRFN-W-------QRLWTIS-PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~-------~~v~~~~-~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdv 90 (763)
+.|.+++|+| ++++||+|+.||.|++|++. + +.+..+. |...|.+++|+|+| ++|++|+.||.|++||+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 4599999999 99999999999999999994 3 3445554 78899999999998 69999999999999999
Q ss_pred cCCeEEEEe--cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcc-cCCcccccCCccccccee
Q 004298 91 ENGKLLRSL--KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV-SGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 91 e~g~~~~~l--~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~-s~~~~~~~~~~~~~~~~~ 167 (763)
++++.+..+ ..|...|.+++|+|++..+++++ .|+.+++||...... .... .++... .+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~~~~~~~~------~~~~~- 226 (402)
T 2aq5_A 162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC------RDKRVRVIEPRKGTV--VAEKDRPHEGT------RPVHA- 226 (402)
T ss_dssp TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE------TTSEEEEEETTTTEE--EEEEECSSCSS------SCCEE-
T ss_pred CCCCccEEEecCCCCCceEEEEECCCCCEEEEEe------cCCcEEEEeCCCCce--eeeeccCCCCC------cceEE-
Confidence 999999999 88999999999999999999998 899999999875311 0011 112111 11122
Q ss_pred cccCCCeeEEEEE---cCCCcEEEEEcCceee--eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 168 NSSHQRFSILCSG---DKDGSICFNIFGIFPI--GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 168 ~~~~~~~~~L~sg---s~DG~I~lw~~~~~~i--g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+.+++.++++| +.||.|++|+...... ....+. ....+..++|+|||+.+++++.
T Consensus 227 -~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 227 -VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----------------TSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp -EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----------------CCSSCEEEEEETTTTEEEEEET
T ss_pred -EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----------------CCCceeEEEEcCCCCEEEEEEc
Confidence 345678899999 8999999999765321 111100 1134778999999999987764
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.78 E-value=1.4e-18 Score=191.92 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.++.++|+|+++++++++.|+.|++|++..... ..+.....+....|+|+|++|++|+.||.|++||+++++....+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 355789999999999999999999999854332 2223334455567899999999999999999999999999998899
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
|...|++++|+|++..+++++ .|+.+++||..... ......++... +..+ .++++++.|++|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s------~d~~i~iwd~~~~~--~~~~~~~h~~~-------v~~~--~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSS------QDMQLKIWSVKDGS--NPRTLIGHRAT-------VTDI--AIIDRGRNVLSAS 200 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCC--CCEEEECCSSC-------EEEE--EEETTTTEEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEe------CCCeEEEEeCCCCc--CceEEcCCCCc-------EEEE--EEcCCCCEEEEEc
Confidence 999999999999999999998 89999999987531 11222233222 2223 3456778999999
Q ss_pred CCCcEEEEEcCce-eeeeeeecc----------------------------------cccccccCCCCCceeeec-----
Q 004298 182 KDGSICFNIFGIF-PIGKINIHK----------------------------------FHVAIPNADEQGTCRLLN----- 221 (763)
Q Consensus 182 ~DG~I~lw~~~~~-~ig~~~i~~----------------------------------~~~~~~s~~~~~~~~l~~----- 221 (763)
.||+|++|+.... ....+..+. ....+.+++.++.+++|+
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999987643 222222110 001123556778888887
Q ss_pred ----------cceeeEEecCCCC-EEEEEeecC
Q 004298 222 ----------ASIYKVALSKDLF-HLTVLCSGQ 243 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~-~Llv~~~d~ 243 (763)
..|.+++|+|+++ .+++++.++
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 3688999999999 777776665
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.78 E-value=2.3e-17 Score=181.89 Aligned_cols=214 Identities=17% Similarity=0.268 Sum_probs=158.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc-CCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE-NGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve-~g~~~~~ 98 (763)
..|.+++|+|++++||+++.||.|.+|++ +++.+..+. |...|.+++| ++++|++|+.||.|++||++ .+..+..
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE
Confidence 45999999999999999999999999999 566677765 7789999999 56899999999999999998 5677888
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...|.++.|+|++..+++++ .|+.+++||....... ....++. ..+..+.+.+. ...+++
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~--~~~~~~~-------~~v~~~~~~p~-~~~ll~ 276 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGG------NDNVVQIWDARSSIPK--FTKTNHN-------AAVKAVAWCPW-QSNLLA 276 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTCSSEE--EEECCCS-------SCCCEEEECTT-STTEEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEe------CCCeEEEccCCCCCcc--EEecCCc-------ceEEEEEECCC-CCCEEE
Confidence 999999999999999999999998 8999999998752111 0111111 22233444332 235777
Q ss_pred EEc--CCCcEEEEEcCcee-eeeeeec---------cccccccc--CCCCCceeeec----------------cceeeEE
Q 004298 179 SGD--KDGSICFNIFGIFP-IGKINIH---------KFHVAIPN--ADEQGTCRLLN----------------ASIYKVA 228 (763)
Q Consensus 179 sgs--~DG~I~lw~~~~~~-ig~~~i~---------~~~~~~~s--~~~~~~~~l~~----------------~~I~~v~ 228 (763)
+|+ .||.|++|+..... ...+... .......+ +..++.+++|+ ..|.+++
T Consensus 277 ~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp EECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 765 89999999865432 2222111 11111123 44678888886 3688899
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
|+|||+++++++.|+ .++++.+...
T Consensus 357 ~s~dg~~l~s~~~dg------------~i~iw~~~~~ 381 (401)
T 4aez_A 357 LSPDGRILSTAASDE------------NLKFWRVYDG 381 (401)
T ss_dssp ECTTSSEEEEECTTS------------EEEEEECCC-
T ss_pred ECCCCCEEEEEeCCC------------cEEEEECCCC
Confidence 999999999887765 7888877654
No 57
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.78 E-value=1.7e-17 Score=177.37 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=99.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc----eEEEecCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEc-c
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQ----RLWTISPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDV-E 91 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~----~v~~~~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdv-e 91 (763)
+..+.|.+++|+|++++|++++.|+.|++|++ +++ ......|...|.+++|+|+|+ +|++|+.||.|++||+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 33456999999999999999999999999999 444 333445888999999999999 9999999999999999 8
Q ss_pred CCeEEEEecc--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 92 NGKLLRSLKS--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ~g~~~~~l~~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+++. ..+.+ |...|.++.|+| +..+++++ .|+.+++||...
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~------~d~~i~iwd~~~ 131 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG-DDKLIAAS------WDGLIEVIDPRN 131 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET-TTEEEEEE------TTSEEEEECHHH
T ss_pred CCce-EeccccCCCCceEEEEeCC-CCEEEEEc------CCCeEEEEcccc
Confidence 7765 67788 999999999999 88999888 899999999764
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.7e-17 Score=178.52 Aligned_cols=219 Identities=13% Similarity=0.134 Sum_probs=160.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC-----CcEEEEEccCCe-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED-----GTITLHDVENGK- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~g~- 94 (763)
+.|.+++|+|++++|++++.||.|++|++ +++.+..+.+...|.+++|+|+|+++++++.+ |.|++||++++.
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 45999999999999999999999999999 67788888888999999999999999999999 999999998653
Q ss_pred ----------EEEEecccCC--ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 95 ----------LLRSLKSHTV--AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 95 ----------~~~~l~~h~~--~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
.+..+..|.. .+.+++|+|++..+++++ .|+.+++||........ .....+.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~-~~~~~~~~-------~ 220 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH------KDGKISKYDVSNNYEYV-DSIDLHEK-------S 220 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE------TTSEEEEEETTTTTEEE-EEEECCSS-------C
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc------CCCEEEEEECCCCcEeE-EEEecCCC-------c
Confidence 3344555665 999999999999999987 89999999987521111 11111211 2
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeee---------cccccccccCCCCC--------------cee
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINI---------HKFHVAIPNADEQG--------------TCR 218 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i---------~~~~~~~~s~~~~~--------------~~~ 218 (763)
+..+ .+++++++|++++.||.|++|+...... ..+.. .........++.++ .++
T Consensus 221 v~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 221 ISDM--QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred eeEE--EECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 2223 3456788999999999999998765322 22211 00000111122222 455
Q ss_pred eec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccc
Q 004298 219 LLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 219 l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
+|+ ..|.+++|+|||+.|++++.|+ .++++.++...+.
T Consensus 299 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------------~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG------------FIRLHHFEKSYFD 350 (369)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS------------EEEEEEECHHHHT
T ss_pred EEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC------------eEEEEECccccch
Confidence 554 5789999999999999887766 8889988876543
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.77 E-value=3.1e-17 Score=179.31 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=163.2
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccC---CCEEEEEEcCCcEEEEEccCCe
Q 004298 20 VASQIKIAEWNP-EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPD---GKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 20 ~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspD---G~~Lasg~~Dg~V~lwdve~g~ 94 (763)
....|.+++|+| ++.++++++.||.|++|++ +++.+..+.+...+.+++|+|. ++++++|+.||.|++||+++++
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 345699999999 7789999999999999999 6667777778889999999994 4599999999999999999999
Q ss_pred EEEEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCCCCCCc---cc----CCcccccCCcccccce
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL---VS----GDTGFTDDSEDSFREL 166 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~---~s----~~~~~~~~~~~~~~~~ 166 (763)
.+..+..|...|.++.|+|++.. +++++ .|+.+++||.+......... .. ............+..+
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATAS------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEc------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999999999999999999985 77887 89999999987532111100 00 0000001112223333
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecc----------------cccccccCCCCCceeeec---------
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHK----------------FHVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~----------------~~~~~~s~~~~~~~~l~~--------- 221 (763)
.+++++++|++|+.||.|++|+............. .......++.++.+++|+
T Consensus 252 --~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 252 --CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp --EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred --EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 34567889999999999999987653211100000 000111223455666665
Q ss_pred -----cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 222 -----ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
..|.+++|+|||++|++++.|+ .++++.++..
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg------------~i~iw~~~~~ 366 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDC------------NILAWVPSLY 366 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTS------------CEEEEEECC-
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCC------------eEEEEeCCCC
Confidence 5789999999999999888766 7888877764
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.77 E-value=9.5e-18 Score=180.52 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=122.3
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCeEEEEEcc-CceEEEec------CCCcEEEEEEccC----CCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNPE----KDLLAMATEDSKILLHRFN-WQRLWTIS------PGKSVTSLCWRPD----GKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP~----~~lLA~~s~Dg~V~v~~l~-~~~v~~~~------~~~~V~~l~wspD----G~~Lasg~~Dg~V~ 86 (763)
+.|.+++|+|+ ..++++++.++.|.+|++. ++.+..+. +...|.+++|+|+ |++|++|+.||.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 34999999994 4566666777799999994 66555443 5678999999999 77999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcc---cCCcccccCCccc
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV---SGDTGFTDDSEDS 162 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~---s~~~~~~~~~~~~ 162 (763)
+||+++++.+..+.+|...|+++.|+| ++..+++++ .|+.+++||...... .... .++. ..
T Consensus 99 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~--~~~~~~~~~~~-------~~ 163 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS------KDHALRLWNIQTDTL--VAIFGGVEGHR-------DE 163 (366)
T ss_dssp EECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTTTEE--EEEECSTTSCS-------SC
T ss_pred EEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe------CCCeEEEEEeecCeE--EEEeccccccc-------Cc
Confidence 999999999999999999999999999 889999998 899999999875311 0000 1121 22
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+..+ .++++++.|++|+.||.|++|+...
T Consensus 164 v~~~--~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 164 VLSA--DYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp EEEE--EECTTSSEEEEEETTSCEEEEESCS
T ss_pred eeEE--EECCCCCEEEEecCCCCEEEEECCC
Confidence 2233 3456778999999999999998664
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.77 E-value=1.2e-17 Score=210.55 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|.+++|+|+++++|+|+.||+|++|++ +++.+..+. |...|.+++|+|||++||+|+.||.|++||+.+++.+..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 345999999999999999999999999999 777888876 788999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+.+|...|.++.|+|+ +..+++++ .|+.+++||..... ......++... +. ...+++++++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~------~d~~v~vwd~~~~~--~~~~~~~h~~~-------v~--~~~~sp~~~~ 757 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGS------NDFFLKLWDLNQKE--CRNTMFGHTNS-------VN--HCRFSPDDEL 757 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEE------TTSCEEEEETTSSS--EEEEECCCSSC-------EE--EEEECSSTTE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEe------CCCeEEEEECCCcc--hhheecCCCCC-------EE--EEEEecCCCE
Confidence 9999999999999994 45788887 89999999987531 11111222222 22 2334567789
Q ss_pred EEEEcCCCcEEEEEcCc
Q 004298 177 LCSGDKDGSICFNIFGI 193 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~ 193 (763)
+++|+.||+|++|+...
T Consensus 758 l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRS 774 (1249)
T ss_dssp EEEEESSSEEEEEEGGG
T ss_pred EEEEECCCeEEEEeCCC
Confidence 99999999999998654
No 62
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.77 E-value=5.6e-18 Score=186.79 Aligned_cols=206 Identities=12% Similarity=0.009 Sum_probs=140.5
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCc-eEEE-----ec-CCCcEEEEEEcc--------CCCEEEEEEcCCcEEEEEccCCe
Q 004298 30 NPEKDLLAMATEDSKILLHRFNWQ-RLWT-----IS-PGKSVTSLCWRP--------DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~-----~~-~~~~V~~l~wsp--------DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+|++.++|+++.|++|+||+.... .... +. |...|++++|+| ||++||+|+.|++|+|||++++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 345668999999999999999443 3221 11 778999999998 89999999999999999999998
Q ss_pred EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCccc--------------cc
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGF--------------TD 157 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~--------------~~ 157 (763)
.+..+..|...|.+++|+|++. .+++++ .|+++++||......... ......... ..
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGE------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEE------TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecC------CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 8888888999999999999875 788888 899999999876422111 000000000 00
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee-e-----eeccc-------------------------cc
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK-I-----NIHKF-------------------------HV 206 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-~-----~i~~~-------------------------~~ 206 (763)
.....+..+.+ ..+++..+++++.|+++++|+....+.+. + .+... ..
T Consensus 252 ~~~~~v~~v~~-~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 4gq1_A 252 GIASSLANVRW-IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY 330 (393)
T ss_dssp CCSSSCSEEEE-ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred cccccceeeee-ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence 11112222222 23667899999999999999754322110 0 00000 00
Q ss_pred ccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeec
Q 004298 207 AIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 207 ~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d 242 (763)
-..+++.++.+++|+ .+|.+++|||||++|++++.+
T Consensus 331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 331 FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 113556789999997 469999999999999988654
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.5e-18 Score=186.43 Aligned_cols=206 Identities=14% Similarity=0.167 Sum_probs=151.0
Q ss_pred CeEEEEEcCCCC-EEEEE----------eCCCeEEEEEccCc----eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 23 QIKIAEWNPEKD-LLAMA----------TEDSKILLHRFNWQ----RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~----------s~Dg~V~v~~l~~~----~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
.|.+++|+|++. ++|++ +.|+.|++|++... .+..+.|...|++++|+|||++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 378899999986 99999 88999999999432 4555668889999999999999999999999999
Q ss_pred EEccC----CeEEEEecccCCceeEEEeecC-CCceeccCCCCCcccCCceeecCCCCCC------CCC-CCcccCCccc
Q 004298 88 HDVEN----GKLLRSLKSHTVAVVCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRI------PQM-PGLVSGDTGF 155 (763)
Q Consensus 88 wdve~----g~~~~~l~~h~~~V~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~------~~l-~~~~s~~~~~ 155 (763)
||+.+ .+.+..+..|...|+++.|+|+ +..+++++ .|+.+++||..... ... .....++
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--- 164 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSS--- 164 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEEC------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS---
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEc------CCCeEEEEECCCCccccccccccccccccCC---
Confidence 99987 4588889999999999999998 78999998 89999999987642 110 0001111
Q ss_pred ccCCcccccceecccCCC-eeEEEEEcCCCcEEEEEcCcee-eeeeeec----------------cc-ccccccCCCCC-
Q 004298 156 TDDSEDSFRELANSSHQR-FSILCSGDKDGSICFNIFGIFP-IGKINIH----------------KF-HVAIPNADEQG- 215 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~----------------~~-~~~~~s~~~~~- 215 (763)
...+..+. ++++ ..++++|+.||.|++|+..... +..+..+ .. ...+.+++.++
T Consensus 165 ----~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 165 ----VDEVISLA--WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp ----SCCCCEEE--ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ----CCCeeEEE--eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 12233333 3454 5789999999999999876432 2222211 10 01122344454
Q ss_pred --ceeeec----------------cceeeEEecC-CCCEEEEEeecC
Q 004298 216 --TCRLLN----------------ASIYKVALSK-DLFHLTVLCSGQ 243 (763)
Q Consensus 216 --~~~l~~----------------~~I~~v~~Sp-Dg~~Llv~~~d~ 243 (763)
.+++|+ ..|.+++|+| +++.+++++.++
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 666665 3578899999 888888887766
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.77 E-value=2e-17 Score=180.54 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=142.1
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
...|.+++|+|++ +++|+|+.||.|++|++ +++....+. |...|.+++|+| ++++|++|+.||.|++||+++ +
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~ 151 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S 151 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C
Confidence 4569999999999 99999999999999999 455544443 788999999999 789999999999999999985 5
Q ss_pred EEEEeccc---CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 LLRSLKSH---TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~~~l~~h---~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+..| ...|.+++|+|++..+++++ .|+.+++||.... ......++.. .+..+ .++
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~---~~~~~~~h~~-------~v~~~--~~~ 213 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD------STGRLLLLGLDGH---EIFKEKLHKA-------KVTHA--EFN 213 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEE------TTSEEEEEETTSC---EEEEEECSSS-------CEEEE--EEC
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEEC------CCCCEEEEECCCC---EEEEeccCCC-------cEEEE--EEC
Confidence 55565544 47899999999999999998 8999999998532 1111122222 22233 345
Q ss_pred CCee-EEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecC-CCCEEEEEeecC
Q 004298 172 QRFS-ILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK-DLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~-~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp-Dg~~Llv~~~d~ 243 (763)
+++. ++++|+.||+|++|+...... +.. +. ..-....|.+++|+| ||+.+++++.++
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~--------------~~~~~~~v~~~~~s~~~~~~l~~~~~d~ 273 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSY-IA--------------EMPHEKPVNAAYFNPTDSTKLLTTDQRN 273 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EE--------------EEECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccce-EE--------------EecCCCceEEEEEcCCCCCEEEEEcCCC
Confidence 6666 899999999999999765211 000 00 001224688999999 999999888766
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.77 E-value=2.4e-17 Score=183.33 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=147.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe---------cCCCcEEEEEEccCC-CEEEEEEcCCcEEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI---------SPGKSVTSLCWRPDG-KAIAVGLEDGTITLHD 89 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~---------~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwd 89 (763)
...|.+++|+|+++++++| .|+.|++|++. +.+...+ .|...|++++|+|+| ++|++|+.||.|++||
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 3459999999999999998 79999999995 4444431 367889999999999 9999999999999999
Q ss_pred ccCCeE----EEEecccCC------------ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 90 VENGKL----LRSLKSHTV------------AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 90 ve~g~~----~~~l~~h~~------------~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
+++++. +..+..|.. .|.+++|+|+++++++++ . +.+++||.......+ ....++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~-~~v~iwd~~~~~~~~-~~~~~~~ 327 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD------Y-LSVKVWDLNMENRPV-ETYQVHE 327 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE------S-SEEEEEETTCCSSCS-CCEESCG
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee------C-CeEEEEeCCCCcccc-ceeeccc
Confidence 999887 788888876 899999999999999997 6 999999987521111 1122222
Q ss_pred ccccC------CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeeccccccc---------ccCCC--CCc
Q 004298 154 GFTDD------SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAI---------PNADE--QGT 216 (763)
Q Consensus 154 ~~~~~------~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~---------~s~~~--~~~ 216 (763)
..... .......+..++++++++|++|+.||.|++|+......-.+..+..+... ..++. ...
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence 21100 00001112245667888999999999999999776544333322211100 00000 000
Q ss_pred ee----eeccceeeEEecCCCCEEEEEeec
Q 004298 217 CR----LLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 217 ~~----l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+. -+...|..++|+|+|+.|++++.+
T Consensus 408 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 408 ISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp EEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred ccccccccCCceeEEEECCCCCEEEEEecc
Confidence 10 123568899999999999887654
No 66
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.77 E-value=1.2e-17 Score=181.48 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=128.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|.+++|+|++..+++++.|++|++|++ +++.+..+. |...|.+++|+| +|++|++|+.||+|++||+++++++.
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 34999999999999999999999999999 666676665 788999999988 57899999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+.+|...|++++|+|++..+++++ .|+++++||.+..... .....+.. ...+ ....+++++.+|
T Consensus 235 ~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~v~lwd~~~~~~~--~~~~~~~~-----~~~~--~~~~~s~~g~~l 299 (354)
T 2pbi_B 235 AFETHESDVNSVRYYPSGDAFASGS------DDATCRLYDLRADREV--AIYSKESI-----IFGA--SSVDFSLSGRLL 299 (354)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEE--EEECCTTC-----CSCE--EEEEECTTSSEE
T ss_pred EecCCCCCeEEEEEeCCCCEEEEEe------CCCeEEEEECCCCcEE--EEEcCCCc-----ccce--eEEEEeCCCCEE
Confidence 9999999999999999999999998 8999999998753110 00000000 0011 223456788899
Q ss_pred EEEcCCCcEEEEEcCc
Q 004298 178 CSGDKDGSICFNIFGI 193 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~ 193 (763)
++|+.||+|++|+...
T Consensus 300 ~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLK 315 (354)
T ss_dssp EEEETTSCEEEEETTT
T ss_pred EEEECCCcEEEEECCC
Confidence 9999999999998643
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.5e-17 Score=180.84 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=161.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+.|.+++|+|++++||+++.||.|.+|+.+++.+..+. |...|.+++|+|+|++|++++.||.|++||+++++.+..+.
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 36999999999999999999999999999888888887 77899999999999999999999999999999999999998
Q ss_pred ccCCc---------------eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 101 SHTVA---------------VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 101 ~h~~~---------------V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
.+... +.++.|++++. +++++ .++.+++|+..... ......++.. .+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~g~i~~~d~~~~~--~~~~~~~~~~-------~i~~ 252 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPG------PKGAIFVYQITEKT--PTGKLIGHHG-------PISV 252 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEEC------GGGCEEEEETTCSS--CSEEECCCSS-------CEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEc------CCCeEEEEEcCCCc--eeeeeccCCC-------ceEE
Confidence 87776 99999999876 45555 69999999987531 1111112221 2222
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccc---------cccccCCCCCceeeec--------------
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFH---------VAIPNADEQGTCRLLN-------------- 221 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~---------~~~~s~~~~~~~~l~~-------------- 221 (763)
+. +++++++|++|+.||.|++|+..... ...+..+... ..+.+++.++.+++|+
T Consensus 253 ~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 253 LE--FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EE--EETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred EE--ECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 33 44666799999999999999865421 1111111110 0334566788888887
Q ss_pred cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
..|.+++|+|||+.+++++.++ .++++.+...
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg------------~i~i~~~~~~ 362 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDG------------QVNVYDLKKL 362 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTS------------CEEEEECHHH
T ss_pred ccEEEEEEcCCCCEEEEEECCC------------eEEEEECCCC
Confidence 4688999999999999887665 6777776543
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.76 E-value=7.9e-18 Score=187.21 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=118.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce------------EEEec-CC------------CcEEEEEEccCC--C
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR------------LWTIS-PG------------KSVTSLCWRPDG--K 74 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~------------v~~~~-~~------------~~V~~l~wspDG--~ 74 (763)
+.|.+++|+|++++||+|+.||.|+||++.... +..+. |. ..|++++|+|++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 469999999999999999999999999995332 33333 55 779999999998 8
Q ss_pred EEEEEEcCCcEEEEEccCCeEE---------------------------------------EE-ecccCCceeEEEeecC
Q 004298 75 AIAVGLEDGTITLHDVENGKLL---------------------------------------RS-LKSHTVAVVCLNWEED 114 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdve~g~~~---------------------------------------~~-l~~h~~~V~~l~ws~~ 114 (763)
.|++|+.||+|++||+.+++.. .. ..+|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 9999999999999999865442 12 3579999999999999
Q ss_pred CCceeccCCCCCcccCCceeecCCCCCCCCC------CCcccCCcccccCCcccccceecccCCCe-eEEEEEcCCCcEE
Q 004298 115 AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM------PGLVSGDTGFTDDSEDSFRELANSSHQRF-SILCSGDKDGSIC 187 (763)
Q Consensus 115 ~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~L~sgs~DG~I~ 187 (763)
+..++++ .|+.+++||........ +....++.. .+..+ .+++++ ++|++|+.||+|+
T Consensus 189 ~~~l~s~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~--~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 189 YETYLSA-------DDLRINLWHLEITDRSFNIVDIKPANMEELTE-------VITAA--EFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SSEEEEE-------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-------CEEEE--EECSSCTTEEEEEETTSCEE
T ss_pred CCEEEEe-------CCCeEEEEECCCCCceeeeeecccccccccCc-------ceEEE--EECCCCCcEEEEEeCCCeEE
Confidence 9999987 49999999987311000 001112222 22233 345666 8999999999999
Q ss_pred EEEcCce
Q 004298 188 FNIFGIF 194 (763)
Q Consensus 188 lw~~~~~ 194 (763)
+|+....
T Consensus 253 iwd~~~~ 259 (447)
T 3dw8_B 253 LCDMRAS 259 (447)
T ss_dssp EEETTTC
T ss_pred EEECcCC
Confidence 9987654
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.3e-17 Score=174.97 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=141.3
Q ss_pred CCeEEEEEcCCCCE-EEEEeC---CCeEEEEEccC-ce--EEEecCCCcEEEEEEccC---CCEEEEEEcCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDL-LAMATE---DSKILLHRFNW-QR--LWTISPGKSVTSLCWRPD---GKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~l-LA~~s~---Dg~V~v~~l~~-~~--v~~~~~~~~V~~l~wspD---G~~Lasg~~Dg~V~lwdve 91 (763)
..|.+++|+|++.. +++++. |+.|++|++.. +. .....|...|.+++|+|+ |++|++|+.||.|++||++
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 44999999999965 456665 89999999944 33 333457889999999998 7999999999999999999
Q ss_pred CCe-EEEEecccCCceeEEEe------ecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 92 NGK-LLRSLKSHTVAVVCLNW------EEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 92 ~g~-~~~~l~~h~~~V~~l~w------s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
+++ .+..+.+|...|.++.| +|++..+++++ .|+.+++||........ .....+.... ...+.
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~------~d~~i~vwd~~~~~~~~-~~~~~~~~~~---~~~v~ 168 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS------RDGTVKVWDPRQKDDPV-ANMEPVQGEN---KRDCW 168 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE------TTSCEEEECTTSCSSCS-EEECCCTTSC---CCCEE
T ss_pred CCCccEEEEEecccceEEEeeccccccCCCccEEEEEe------CCCeEEEEeCCCCCCcc-eeccccCCCC---CCceE
Confidence 988 88899999999999965 67899999998 89999999987632111 1111111100 11122
Q ss_pred cee--cccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecC---CCCEEEEE
Q 004298 165 ELA--NSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK---DLFHLTVL 239 (763)
Q Consensus 165 ~~~--~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp---Dg~~Llv~ 239 (763)
.+. ..++++++++++|+.||.|++|+.......... -....|.+++|+| ++..++++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET------------------NIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE------------------ECSSCEEEEEESCSSSSCCEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec------------------CCCCceEEEEcCCCCCCCCEEEEE
Confidence 222 235678889999999999999997764432211 1124588999999 99999988
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
+.++
T Consensus 231 ~~dg 234 (357)
T 3i2n_A 231 SLEG 234 (357)
T ss_dssp ESTT
T ss_pred CCCC
Confidence 7766
No 70
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.6e-17 Score=197.09 Aligned_cols=204 Identities=8% Similarity=0.032 Sum_probs=147.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
++.|.+++|+|++++||+|+.||.|+||+... +.+....+...|.+++|+| |++|++++.|++|++||+++++.++.+
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 34599999999999999999999999999944 4455566778999999999 899999999999999999999999988
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC---CC------CcccCCcccccCCcccccceeccc
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ---MP------GLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~---l~------~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
. |...|++++|+|++.++++|+ .|+++++||....... .+ ....++. ..+..+. +
T Consensus 96 ~-~~~~V~~v~~sp~g~~l~sgs------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-------~~V~sl~--~ 159 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLDWMLIGL------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-------SPIVSIQ--W 159 (902)
T ss_dssp E-CSSCEEEEECCTTCSEEEEEE------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-------CCCCEEE--E
T ss_pred c-CCCCEEEEEECCCCCEEEEEc------CCCcEEEEECCCCccccceeccccccccccccCC-------CCeEEEE--E
Confidence 6 678999999999999999998 8999999998753110 00 0011122 1223333 3
Q ss_pred CC-CeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCC-CceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 171 HQ-RFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQ-GTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 171 ~~-~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~-~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++ +...+++|+.||.| +|+...... ..+..+..+... .+... ...+-....|.+++|+|||+++++++.|+
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP-GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC-CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC-CcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 44 35789999999999 999765432 222211000000 00000 00011224689999999999999988876
No 71
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.75 E-value=2.9e-17 Score=183.15 Aligned_cols=221 Identities=14% Similarity=0.208 Sum_probs=158.4
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-----------CceEEEec-CCCcEEEEEEccCCC-EEEEEEcCCcEEE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN-----------WQRLWTIS-PGKSVTSLCWRPDGK-AIAVGLEDGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-----------~~~v~~~~-~~~~V~~l~wspDG~-~Lasg~~Dg~V~l 87 (763)
+.|.+++|+|+ ++++|+++.||.|.+|++. .+.+..+. |+..|.+++|+|+++ +|++|+.||.|++
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 208 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 208 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEE
Confidence 34999999997 6899999999999999994 34555554 788999999999998 9999999999999
Q ss_pred EEccCCeE-------EEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccC
Q 004298 88 HDVENGKL-------LRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDD 158 (763)
Q Consensus 88 wdve~g~~-------~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~ 158 (763)
|++.++.. ...+.+|...|.+++|+| ++..+++++ .|+.+++||.+.... ........+.
T Consensus 209 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~------~dg~i~i~d~~~~~~~~~~~~~~~~~----- 277 (430)
T 2xyi_A 209 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA------DDQKLMIWDTRNNNTSKPSHTVDAHT----- 277 (430)
T ss_dssp EETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE------TTSEEEEEETTCSCSSSCSEEEECCS-----
T ss_pred EeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe------CCCeEEEEECCCCCCCcceeEeecCC-----
Confidence 99987322 456778999999999999 567788887 899999999986321 1111111221
Q ss_pred CcccccceecccCCCee-EEEEEcCCCcEEEEEcCce--eeeeeeecccc-----------cccccCCCCCceeeec---
Q 004298 159 SEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIF--PIGKINIHKFH-----------VAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~--~ig~~~i~~~~-----------~~~~s~~~~~~~~l~~--- 221 (763)
..+..+. +++++. ++++|+.||.|++|++... ++..+..+... .-+.+++.++.+++|+
T Consensus 278 --~~v~~i~--~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 278 --AEVNCLS--FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --SCEEEEE--ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred --CCeEEEE--eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 2233344 345444 7999999999999997752 23333322211 1134566677788775
Q ss_pred -------------------------cceeeEEecCCCC-EEEEEeecCccccccCCCCCCcEEEEEeecccccc
Q 004298 222 -------------------------ASIYKVALSKDLF-HLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFSK 269 (763)
Q Consensus 222 -------------------------~~I~~v~~SpDg~-~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~ 269 (763)
..|.+++|+|++. .+++++.++ .++++.++...+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg------------~i~iw~~~~~~~~~ 415 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN------------IMQVWQMAENVYND 415 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS------------EEEEEEECHHHHCC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC------------CEEEeEcccccccC
Confidence 2488899999999 444444433 78888888776553
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.75 E-value=6.1e-17 Score=194.61 Aligned_cols=207 Identities=14% Similarity=0.216 Sum_probs=157.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-eEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-KLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-~~~~~ 98 (763)
+.|.+++|+|++++||+++.||.|.+|++ +++.+..+. |...|++++|+|+|++|++|+.||.|++||++++ .....
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 45999999999999999999999999999 677777776 7889999999999999999999999999999987 77788
Q ss_pred ecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|...|.++.|+| ++..+++++ .|+++++||........ .... .....+..+.+.+.++++++
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~v~vwd~~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGC------LDRTVKVWSLGQSTPNF--TLTT------GQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEE------TTSEEEEEETTCSSCSE--EEEC------CCTTCCCEEEECCSTTCCEE
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCccee--EEec------CCCCCEEEEEEEECCCCCEE
Confidence 889999999999999 788888887 89999999986532111 0000 01122334455554588899
Q ss_pred EEEcCCCcEEEEEcCcee-eeeeeecccc----------cccccCCCCCceeeec--------------cceeeEEecCC
Q 004298 178 CSGDKDGSICFNIFGIFP-IGKINIHKFH----------VAIPNADEQGTCRLLN--------------ASIYKVALSKD 232 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~-ig~~~i~~~~----------~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD 232 (763)
++|+.||.|++|+..... ...+..+... ..+.+++.++.+++|+ ..+.+++|+|+
T Consensus 202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 999999999999865432 2222222111 1134566788899997 46889999999
Q ss_pred CCEE-EEEeec
Q 004298 233 LFHL-TVLCSG 242 (763)
Q Consensus 233 g~~L-lv~~~d 242 (763)
|+.+ ++++.+
T Consensus 282 ~~~~~~~~~~~ 292 (814)
T 3mkq_A 282 GRKNYIASGFD 292 (814)
T ss_dssp CGGGEEEEEET
T ss_pred CCceEEEEEeC
Confidence 9864 444433
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.75 E-value=3.2e-16 Score=174.01 Aligned_cols=214 Identities=19% Similarity=0.260 Sum_probs=155.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~ 98 (763)
..|++++|+|+|++||+|+.||.|.||++ +++.+..+. |...+.++.| ++++|++|+.|+.+++||... ...+..
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEE
Confidence 45999999999999999999999999999 666676665 6778888777 568999999999999999875 456778
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+.+|...+.++.|+|++..+++++ .|+.+++|+......... .....+ ...+..+.+++... ++
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~------~D~~v~i~~~~~~~~~~~~~~~~~~~-------~~~V~~~~~~p~~~-~~ 291 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGG------NDNLVNVWPSAPGEGGWVPLQTFTQH-------QGAVKAVAWCPWQS-NV 291 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEESSCCSSCSCCSEEECCC-------SSCEEEEEECTTCT-TE
T ss_pred ecccccceeeeeecCCCCeeeeee------ccccceEEeeccccccceeeeeeccc-------CCceeeeeeCCCcc-cE
Confidence 899999999999999999999998 899999999875321111 111111 12233344443322 34
Q ss_pred EE--EEcCCCcEEEEEcCceee-eeeeecccc---------ccc--ccCCCCCceeeec--------------cceeeEE
Q 004298 177 LC--SGDKDGSICFNIFGIFPI-GKINIHKFH---------VAI--PNADEQGTCRLLN--------------ASIYKVA 228 (763)
Q Consensus 177 L~--sgs~DG~I~lw~~~~~~i-g~~~i~~~~---------~~~--~s~~~~~~~~l~~--------------~~I~~v~ 228 (763)
++ +|+.||+|++|+...... ..+..+... ... .++..++.+++|+ +.|.+++
T Consensus 292 la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~ 371 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 44 456899999998665322 222211110 011 1344678889887 4699999
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
|||||++|+.++.|+ .|+++.+.
T Consensus 372 ~spdg~~l~S~s~D~------------tvriWdv~ 394 (420)
T 4gga_A 372 MSPDGATVASAAADE------------TLRLWRCF 394 (420)
T ss_dssp ECTTSSCEEEEETTT------------EEEEECCS
T ss_pred EcCCCCEEEEEecCC------------eEEEEECC
Confidence 999999999988776 77787654
No 74
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.1e-17 Score=177.21 Aligned_cols=210 Identities=19% Similarity=0.297 Sum_probs=145.8
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEc----cCce-------EEEec-----------CCCcEEEEEEccCCCEEEEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRF----NWQR-------LWTIS-----------PGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l----~~~~-------v~~~~-----------~~~~V~~l~wspDG~~Lasg 79 (763)
.|.+++|+|+++ +||+++.||.|.+|++ .... ...+. |...|++++|+|||++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 499999999999 9999999999999999 5333 33332 24589999999999999999
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcc---
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTG--- 154 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~--- 154 (763)
+.||.|++|| .+++.+..+..|...|.++.|+|++..+++++ .|+.+++|+..... ..+.........
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD------VENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE------TTCCEEEEETTTTEEEEEECCC---------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe------cCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 9999999999 67889999999999999999999999999988 89999999986521 000000000000
Q ss_pred c-ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eee----------eeecccccccccCCCCCceeeec-
Q 004298 155 F-TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGK----------INIHKFHVAIPNADEQGTCRLLN- 221 (763)
Q Consensus 155 ~-~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~----------~~i~~~~~~~~s~~~~~~~~l~~- 221 (763)
. .......+..+.+ .++ ..+++++.||.|++|+..... ... +........+.+++.++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEW--VDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp ------CCCBSCCEE--EET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred ccccCCcceeeEEEE--cCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 0 0000000222333 233 468899999999999865421 111 11111111234566788888887
Q ss_pred -------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 -------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|++ .+++++.++
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCC
Confidence 468899999999 777776665
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.74 E-value=4.1e-17 Score=175.08 Aligned_cols=212 Identities=12% Similarity=0.155 Sum_probs=150.5
Q ss_pred CeEEEEEcCC---CCEEEEEeCCCeEEEEEc-cCc-eEEEec-CCCcEEEEE------EccCCCEEEEEEcCCcEEEEEc
Q 004298 23 QIKIAEWNPE---KDLLAMATEDSKILLHRF-NWQ-RLWTIS-PGKSVTSLC------WRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~sP~---~~lLA~~s~Dg~V~v~~l-~~~-~v~~~~-~~~~V~~l~------wspDG~~Lasg~~Dg~V~lwdv 90 (763)
.|.+++|+|+ ++++++++.||.|++|++ +++ .+..+. |...|.+++ |+|+|++|++|+.||.|++||+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 4999999999 699999999999999999 444 566665 778899995 4789999999999999999999
Q ss_pred cCCe-EEEEecccCC----ceeEEE----eecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 91 ENGK-LLRSLKSHTV----AVVCLN----WEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 91 e~g~-~~~~l~~h~~----~V~~l~----ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
++++ .+..+..|.. .|.++. |+|++..+++++ .|+.+++||....... ....+ ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~---~~~~~-------~~ 210 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY------DNGDIKLFDLRNMALR---WETNI-------KN 210 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE------TTSEEEEEETTTTEEE---EEEEC-------SS
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc------cCCeEEEEECccCcee---eecCC-------CC
Confidence 9887 6777766554 899998 788999999998 8999999998763210 00111 11
Q ss_pred cccceecccCC---CeeEEEEEcCCCcEEEEEcCcee-eeeee-----eccc----------cc-ccccCCCCCceeeec
Q 004298 162 SFRELANSSHQ---RFSILCSGDKDGSICFNIFGIFP-IGKIN-----IHKF----------HV-AIPNADEQGTCRLLN 221 (763)
Q Consensus 162 ~~~~~~~~~~~---~~~~L~sgs~DG~I~lw~~~~~~-ig~~~-----i~~~----------~~-~~~s~~~~~~~~l~~ 221 (763)
.+..+. +++ +++.+++|+.||.|++|+..... ...+. .+.. .. .+.+++.++.+++|+
T Consensus 211 ~v~~~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 211 GVCSLE--FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp CEEEEE--ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred ceEEEE--cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 222233 334 67788899999999999754321 11110 1111 01 234566777788776
Q ss_pred c---------------------------------ceeeEEecCCCCEEEE-EeecCccccccCCCCCCcEEEEEeec
Q 004298 222 A---------------------------------SIYKVALSKDLFHLTV-LCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 ~---------------------------------~I~~v~~SpDg~~Llv-~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
. +|.+++|+|||+.+++ ++.|+ .++++.+..
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~------------~i~iw~~~~ 353 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ------------TVRVLIVTK 353 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS------------EEEEEEECC
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC------------cEEEEECCC
Confidence 2 4788999999999985 54444 677776653
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.74 E-value=1.5e-16 Score=171.95 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=120.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEE---ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE--
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWT---ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL-- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~---~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~-- 95 (763)
..|.+++|+|+++++++++.||.|++|++.... ... ..+...|.+++|+|+|++|++|+.||.|++||+++++.
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 459999999999999999999999999994433 222 23778999999999999999999999999999998762
Q ss_pred -EEE-ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC---C-----cccCCc-ccccCCccccc
Q 004298 96 -LRS-LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP---G-----LVSGDT-GFTDDSEDSFR 164 (763)
Q Consensus 96 -~~~-l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~---~-----~~s~~~-~~~~~~~~~~~ 164 (763)
... ...|...|.++.|+|++..+++++ .|+.+++||......... . ...+.. .........+.
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGS------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 206 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEE------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEc------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEE
Confidence 333 367889999999999999999998 899999999753210000 0 000000 00001112222
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+ .+++++++|++|+.||.|++|+...
T Consensus 207 ~~--~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 207 GV--CFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EE--EECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EE--EECCCCCEEEEEeCCCEEEEEECCC
Confidence 33 3456778999999999999998653
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.3e-17 Score=178.99 Aligned_cols=206 Identities=10% Similarity=0.006 Sum_probs=146.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc----cCceE--------EEec-----CCCcEEEEE--EccCCCEEEEEEcC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF----NWQRL--------WTIS-----PGKSVTSLC--WRPDGKAIAVGLED 82 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l----~~~~v--------~~~~-----~~~~V~~l~--wspDG~~Lasg~~D 82 (763)
+.|.+++|+|++++|++++.||.|++|++ .++.+ ..+. +...+.++. |+|++++|++|+.|
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 34999999999999999999999999998 33322 2222 455677777 67899999999999
Q ss_pred CcEEEEEccCCeEEEEecc--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCcccccCC
Q 004298 83 GTITLHDVENGKLLRSLKS--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDTGFTDDS 159 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~~~~~~~ 159 (763)
|.|++||+++++.+..+.. |...|++++|+|++..+++++ .|+.+++||.+.... ..... ++
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~~~~~--~~~~~~~~------- 256 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT------TRGIIDIWDIRFNVL--IRSWSFGD------- 256 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE------TTSCEEEEETTTTEE--EEEEBCTT-------
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc------CCCeEEEEEcCCccE--EEEEecCC-------
Confidence 9999999999999999988 889999999999999999998 899999999875211 00000 11
Q ss_pred cccccceec--ccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCC------ceee--eccceeeEE
Q 004298 160 EDSFRELAN--SSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQG------TCRL--LNASIYKVA 228 (763)
Q Consensus 160 ~~~~~~~~~--~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~------~~~l--~~~~I~~v~ 228 (763)
...+..+.+ .+++++.+|++|+.||+|++|+..... ...+..+...........++ .++- ....|.+++
T Consensus 257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 112233322 345778899999999999999976432 33333222111110000100 1111 346789999
Q ss_pred ecCCCCEEEEEeecC
Q 004298 229 LSKDLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~ 243 (763)
|+ +++.+++++.|+
T Consensus 337 ~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 337 VS-NDKILLTDEATS 350 (437)
T ss_dssp EE-TTEEEEEEGGGT
T ss_pred EC-CceEEEecCCCC
Confidence 99 778888777666
No 78
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.74 E-value=5.8e-17 Score=173.22 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=121.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC----
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN---- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~---- 92 (763)
..|.+++|+|+++ ++++++.||.|++|++ .......+. |...|.+++|+| +++|++|+.||.|++||+++
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 3499999999999 9999999999999999 777666654 778999999999 99999999999999999987
Q ss_pred -----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC-CCCCCCCcccCCcccccCCcccccce
Q 004298 93 -----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP-RIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 93 -----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~-~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
++.+..+. |...|.++.|++++ +++++ .++.+++||... ...........+. ..+..
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~- 198 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGM------NNSQVQWFRLPLCEDDNGTIEESGLK-------YQIRD- 198 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEE------STTEEEEEESSCCTTCCCEEEECSCS-------SCEEE-
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCc--EEEEe------CCCeEEEEECCccccccceeeecCCC-------CceeE-
Confidence 77777776 88999999999987 66666 799999999876 2211111111111 11222
Q ss_pred ecccCC-CeeEEEEEcCCCcEEEEEcCc
Q 004298 167 ANSSHQ-RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 167 ~~~~~~-~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..+++ +++++++|+.||.|++|+++.
T Consensus 199 -i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 199 -VALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp -EEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred -EEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 33456 778999999999999998754
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.74 E-value=9.2e-17 Score=178.38 Aligned_cols=197 Identities=19% Similarity=0.252 Sum_probs=145.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..++||++ ++||+|. |++|+||+. +|+.+..+. |+..|++++|+|||++||+|+.||+|+|||+++++.++.+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 456999975 6888776 899999999 666554443 6678999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.|+ +..+++++ .|+.+++|+........ ....++...+ ....+.+.++.+++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs------~d~~i~~~d~~~~~~~~-~~~~~h~~~~---------~~~~~~~~g~~l~s 247 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGS------RSGHIHHHDVRVAEHHV-ATLSGHSQEV---------CGLRWAPDGRHLAS 247 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEE------TTSEEEEEETTSSSCEE-EEEECCSSCE---------EEEEECTTSSEEEE
T ss_pred eCCCCceEEEeeC--CCEEEEEe------CCCceeEeeecccceee-EEecccccce---------eeeeecCCCCeeee
Confidence 9999999999886 56888888 89999999977532211 1112222221 12234577789999
Q ss_pred EcCCCcEEEEEcCcee-----eeeeeecccc----------cc---cccCCCCCceeeec-------------cceeeEE
Q 004298 180 GDKDGSICFNIFGIFP-----IGKINIHKFH----------VA---IPNADEQGTCRLLN-------------ASIYKVA 228 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-----ig~~~i~~~~----------~~---~~s~~~~~~~~l~~-------------~~I~~v~ 228 (763)
++.||.+++|+..... ......+... .. ..+++.|+.+++|+ ..+.++.
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~ 327 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeee
Confidence 9999999999865321 1111111110 00 12456789999997 4578899
Q ss_pred ecCCCCEEEEEe
Q 004298 229 LSKDLFHLTVLC 240 (763)
Q Consensus 229 ~SpDg~~Llv~~ 240 (763)
|+|+++.+++++
T Consensus 328 ~~~~~~~lv~~s 339 (420)
T 4gga_A 328 WSPHYKELISGH 339 (420)
T ss_dssp EETTTTEEEEEE
T ss_pred ecCCCCeEEEEE
Confidence 999999998876
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.4e-17 Score=190.59 Aligned_cols=188 Identities=9% Similarity=0.034 Sum_probs=138.6
Q ss_pred CCeEEEEEcCC------CCEEEEEeCCCeEEEEEccCce------------EEEec-CCCcEEEEEEccCCCEEEEEEcC
Q 004298 22 SQIKIAEWNPE------KDLLAMATEDSKILLHRFNWQR------------LWTIS-PGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 22 ~~V~~l~~sP~------~~lLA~~s~Dg~V~v~~l~~~~------------v~~~~-~~~~V~~l~wspDG~~Lasg~~D 82 (763)
+.|..++|+|+ +.+||+++.||+|++|++.... ...+. |...|++++|+|++ .|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence 45999999997 5799999999999999994321 12332 66789999999875 89999999
Q ss_pred CcEEEEEccCCe-EEEEecccCCceeEE--EeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 83 GTITLHDVENGK-LLRSLKSHTVAVVCL--NWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 83 g~V~lwdve~g~-~~~~l~~h~~~V~~l--~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
|+|++||+++++ ....+.+|...|+++ .|++++ .++++++ .|+++++||.+..... ....++...
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S------~D~tvklWD~~~~~~~--~~~~~~~~~--- 355 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA------VDGYFYIFNPKDIATT--KTTVSRFRG--- 355 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE------TTSEEEEECGGGHHHH--CEEEEECSC---
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec------cCCeEEEEECCCCCcc--ccccccccc---
Confidence 999999999774 455688999999999 578887 8899998 8999999998752110 001111100
Q ss_pred CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 159 SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
..+..+ .+++++..+++++.|++|++|+...... ..+ .-+.+.|.+++|||||+.|+
T Consensus 356 --~~v~~v--~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l------------------~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 356 --SNLVPV--VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL------------------VSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp --CSCCCE--EEETTTTEEEEECSSSEEEEEETTCTTCCEEE------------------EECSSCEEEEECCSSCCBCE
T ss_pred --Ccccce--EeCCCcCeEEEeCCCCcEEEEECcccccceee------------------ecCCCceEEEEeCCCCCeEE
Confidence 001122 3456677899999999999998654321 222 12235689999999999999
Q ss_pred EEeecC
Q 004298 238 VLCSGQ 243 (763)
Q Consensus 238 v~~~d~ 243 (763)
.++.|+
T Consensus 414 Sgs~Dg 419 (524)
T 2j04_B 414 AGSADG 419 (524)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 888877
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.5e-17 Score=173.11 Aligned_cols=156 Identities=9% Similarity=0.055 Sum_probs=121.6
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEc-cCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRF-NWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.+++|+| +++++++++.||+|++|++ +++.+... .+...|++++|+|||++||+|+.||.|++||+++++.+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 4599999999 9999999999999999999 45544433 24557999999999999999999999999999999887
Q ss_pred -EEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCC
Q 004298 97 -RSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 97 -~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
..+.. |...|++++|+|++.++++++ ++.+++||.+..... +.. ...+.. .+.....++++
T Consensus 206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------~~~v~iwd~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~ 270 (343)
T 3lrv_A 206 SSRFPVDEEAKIKEVKFADNGYWMVVEC-------DQTVVCFDLRKDVGTLAYPT-YTIPEF-------KTGTVTYDIDD 270 (343)
T ss_dssp CEECCCCTTSCEEEEEECTTSSEEEEEE-------SSBEEEEETTSSTTCBSSCC-CBC------------CCEEEEECT
T ss_pred ccEEeccCCCCEEEEEEeCCCCEEEEEe-------CCeEEEEEcCCCCcceeecc-cccccc-------cccceEEEECC
Confidence 88888 999999999999999999997 449999998863211 110 000101 11112245667
Q ss_pred CeeEEEEEcC-CCcEEEEEcC
Q 004298 173 RFSILCSGDK-DGSICFNIFG 192 (763)
Q Consensus 173 ~~~~L~sgs~-DG~I~lw~~~ 192 (763)
++++|++|+. |+.|++|.+.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEEEc
Confidence 8889999988 9999999864
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=188.76 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=117.3
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--------------------------------cCceEEEecCCCc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--------------------------------NWQRLWTISPGKS 63 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--------------------------------~~~~v~~~~~~~~ 63 (763)
..|.+..+|.+++|+|||.++|+++.|++|+ +. .+..+..+.+...
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY 87 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence 3566778899999999999999999999994 32 1112222224567
Q ss_pred EEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-----ceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-----AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 64 V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-----~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
|.+++|||||+.||+++.||.|++||.++ ++..+. |.. .|.+++|+|+|+++++|+ .||++++|+.
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs------~DGtVkIWd~ 158 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN------EDGELQFFSI 158 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE------TTSEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc------CCCEEEEEEC
Confidence 99999999999999999999999999643 777777 665 499999999999999998 8999999998
Q ss_pred CCCCC---------CCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 139 APRIP---------QMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 139 ~~~~~---------~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..... .+..+..+|...+ ...++++++ +++++.|++|++|+...
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V---------~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWV---------THIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCE---------EEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred CCCccccccceeeeeeecccccccccE---------EEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 76421 0111113333332 233455777 78888899999998654
No 83
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.8e-17 Score=181.13 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=146.4
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCeEEEEEcc---CceEEEe---cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLL-AMATEDSKILLHRFN---WQRLWTI---SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lL-A~~s~Dg~V~v~~l~---~~~v~~~---~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+.|.+++|+|++++| |+++.||.|++|++. ++.+..+ .+...|++++|+|||++|++|+.||.|++|++.+++
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 469999999999996 889999999999986 4455444 467889999999999999999999999999998877
Q ss_pred EEE----EecccCCceeEEEeecC---CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 95 LLR----SLKSHTVAVVCLNWEED---AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 95 ~~~----~l~~h~~~V~~l~ws~~---~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
... .+.+|...|+++.|+|+ ++++++++ .|+++++||....... .....++.. .+..+.
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~------~d~~i~vwd~~~~~~~-~~~~~~h~~-------~v~~~~ 248 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD------RDEHIKISHYPQCFIV-DKWLFGHKH-------FVSSIC 248 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE------TTSCEEEEEESCTTCE-EEECCCCSS-------CEEEEE
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEc------CCCcEEEEECCCCcee-eeeecCCCC-------ceEEEE
Confidence 544 77789999999999999 88999998 8999999998653110 000112222 222333
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCC-------CCceeeeccceeeEEecCCCCEEEEE
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADE-------QGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~-------~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
++ ++++|++|+.||+|++|++.... +..+..+........... ...-......|..++|+||+++++++
T Consensus 249 --~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 249 --CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp --EC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred --EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 44 77899999999999999976543 333432211000000000 00000123468899999999999998
Q ss_pred e-ecC
Q 004298 240 C-SGQ 243 (763)
Q Consensus 240 ~-~d~ 243 (763)
+ .++
T Consensus 326 ~~~d~ 330 (450)
T 2vdu_B 326 VEATK 330 (450)
T ss_dssp ETTCS
T ss_pred ECCCC
Confidence 8 444
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.73 E-value=5.7e-17 Score=177.26 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=150.7
Q ss_pred CCeEEEEEc----CCCCE-EEEEeCCCeEEEEEccC-------ceEE-----Ee--------cCCCcEEEEEEccCCCEE
Q 004298 22 SQIKIAEWN----PEKDL-LAMATEDSKILLHRFNW-------QRLW-----TI--------SPGKSVTSLCWRPDGKAI 76 (763)
Q Consensus 22 ~~V~~l~~s----P~~~l-LA~~s~Dg~V~v~~l~~-------~~v~-----~~--------~~~~~V~~l~wspDG~~L 76 (763)
..|.+++|+ |++++ +++++.||.|++|++.. +.+. .+ .+...|.+++|+|+| +|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence 459999999 99999 99999999999999943 4433 33 267789999999999 99
Q ss_pred EEEEcCCcEEEEEccCCeEEEEecc---c---CCceeEEEeecCCCceeccCCCCCcccC---CceeecCCCCCCCCCCC
Q 004298 77 AVGLEDGTITLHDVENGKLLRSLKS---H---TVAVVCLNWEEDAQPSKNDFGNIPTYED---RTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l~~---h---~~~V~~l~ws~~~~~l~s~s~~~~~~~d---~~i~~wd~~~~~~~l~~ 147 (763)
++|+.||.|++||+++++.+..+.. | ...|.++.|+|++.++++++ .| +.+++||...... ..
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~------~d~~~g~i~i~d~~~~~~--~~ 272 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH------DSNSFGCITLYETEFGER--IG 272 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE------EETTEEEEEEEETTTCCE--EE
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe------cCCCCceEEEEECCCCcc--cc
Confidence 9999999999999999999999998 9 99999999999999999987 78 9999999875311 11
Q ss_pred cccCC----ccccc--CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc-cc--cccCCCCCce
Q 004298 148 LVSGD----TGFTD--DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH-VA--IPNADEQGTC 217 (763)
Q Consensus 148 ~~s~~----~~~~~--~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~-~~--~~s~~~~~~~ 217 (763)
...+. ..... .....+..+ .+++++++|++|+.||.|++|+.... .+..+...... .+ ....+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 350 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 350 (397)
T ss_dssp EECBC--------CCBSBSSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred eeccCcccccccccccccCCcEEEE--EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccc
Confidence 11110 00000 011122223 34567789999999999999997654 33333311000 00 0000000111
Q ss_pred eeeccceeeEEecCCC----------CEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 218 RLLNASIYKVALSKDL----------FHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 218 ~l~~~~I~~v~~SpDg----------~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
+....+|.+++|+||| +.+++++.|+ .++++.++.
T Consensus 351 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg------------~i~iw~~~~ 395 (397)
T 1sq9_A 351 SLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR------------SIRWFREAG 395 (397)
T ss_dssp BCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT------------EEEEEEEEC
T ss_pred cccCCceeEEEeccccccccccccccceEEEecCCC------------cEEEEEcCC
Confidence 2224679999999999 6777776665 778887764
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.73 E-value=1.3e-16 Score=174.47 Aligned_cols=212 Identities=8% Similarity=0.059 Sum_probs=147.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c------eEEEec-CCCcEEEEEEccC----C---CEEEEEEcCCcE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q------RLWTIS-PGKSVTSLCWRPD----G---KAIAVGLEDGTI 85 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~------~v~~~~-~~~~V~~l~wspD----G---~~Lasg~~Dg~V 85 (763)
.+.|.+++|+| ++||+++.||.|++|++.. + .+..+. |...|++++|+|+ | ++|++|+.||.|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 34599999999 8999999999999999944 3 355554 7889999999999 9 999999999999
Q ss_pred EEEEccCCeE-----EEEeccc-----CCceeEEEee----cCCCc-eeccCCCCCcccCCceeecCCCC------CCCC
Q 004298 86 TLHDVENGKL-----LRSLKSH-----TVAVVCLNWE----EDAQP-SKNDFGNIPTYEDRTSRFFPPAP------RIPQ 144 (763)
Q Consensus 86 ~lwdve~g~~-----~~~l~~h-----~~~V~~l~ws----~~~~~-l~s~s~~~~~~~d~~i~~wd~~~------~~~~ 144 (763)
++||+++++. +..+..| ...|.++.|+ |++.. +++++ .|+.+++||... ....
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD------VKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE------TTSCEEEEEEESSSSHHHHTTT
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe------CCCcEEEEeCCcccccccccee
Confidence 9999998887 8888888 5899999999 99999 99987 899999999875 2111
Q ss_pred C-CC--cccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeee---c---ccc---------
Q 004298 145 M-PG--LVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINI---H---KFH--------- 205 (763)
Q Consensus 145 l-~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i---~---~~~--------- 205 (763)
. .. ...+...........+..+ .+++++ ++++|+.||.|++|+.... .+..+.. + ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSV--DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEE--EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eccCcceeeeeeccccCCCCCceEE--EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 0 00 0000000000011222233 344666 9999999999999987642 2333332 2 111
Q ss_pred -cccccCCCC---Cceeeec---------------------------cceeeEEecCCCCEEEEEeecC
Q 004298 206 -VAIPNADEQ---GTCRLLN---------------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 206 -~~~~s~~~~---~~~~l~~---------------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+.+++.+ +.+++|+ ..|.+++|+||+++|++++.++
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 112244455 6777765 2477899999999998887765
No 86
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.4e-17 Score=177.83 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=148.1
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-Cc------eEEEe----cCCCcEEEEEEccC-CCEEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN-WQ------RLWTI----SPGKSVTSLCWRPD-GKAIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-~~------~v~~~----~~~~~V~~l~wspD-G~~Lasg~~Dg~V~lw 88 (763)
..|.+++|+|+ ++++++++.|+.|++|++. ++ ....+ .|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 45999999998 8999999999999999994 43 33333 36778999999999 7899999999999999
Q ss_pred EccCCeEEEEeccc------CCceeEEEeecCC-CceeccCCCCCcccCC---ceeecCCCCCCCCCCCccc-CCccccc
Q 004298 89 DVENGKLLRSLKSH------TVAVVCLNWEEDA-QPSKNDFGNIPTYEDR---TSRFFPPAPRIPQMPGLVS-GDTGFTD 157 (763)
Q Consensus 89 dve~g~~~~~l~~h------~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~---~i~~wd~~~~~~~l~~~~s-~~~~~~~ 157 (763)
|+++++.+..+..| ...|.++.|+|++ ..+++++ .|+ .+++||......... ... ++..
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~--- 263 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT------GSDNDPSILIWDLRNANTPLQ-TLNQGHQK--- 263 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE------CCSSSCCCCEEETTSTTSCSB-CCCSCCSS---
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE------CCCCCceEEEEeCCCCCCCcE-EeecCccC---
Confidence 99999999998876 7899999999997 5778877 677 999999876321111 111 2222
Q ss_pred CCcccccceecccCC-CeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCC-C
Q 004298 158 DSEDSFRELANSSHQ-RFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL-F 234 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg-~ 234 (763)
.+..+. +++ ++++|++|+.||+|++|+.... .+..+. .....|.+++|+||+ .
T Consensus 264 ----~v~~~~--~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~------------------~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 264 ----GILSLD--WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP------------------ARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp ----CEEEEE--ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE------------------CSSSCCCCEEECTTCTT
T ss_pred ----ceeEEE--eCCCCCCeEEEEeCCCCEEEeeCCCCccceeec------------------CCCCceEEEEECCCCCC
Confidence 222233 445 6789999999999999986643 222221 122458899999999 6
Q ss_pred EEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 235 HLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 235 ~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.+++++.|+ .++++.++..
T Consensus 320 ~l~s~~~d~------------~i~iw~~~~~ 338 (416)
T 2pm9_A 320 LFACASFDN------------KIEVQTLQNL 338 (416)
T ss_dssp EEEECCSSS------------EEEEEESCCC
T ss_pred EEEEEecCC------------cEEEEEccCC
Confidence 666655544 7888877654
No 87
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-17 Score=188.75 Aligned_cols=153 Identities=9% Similarity=0.030 Sum_probs=120.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cc-eEEEe-cCCCcEEEE--EEccCC-CEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQ-RLWTI-SPGKSVTSL--CWRPDG-KAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~-~v~~~-~~~~~V~~l--~wspDG-~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|.+++|+|+ ..||+|+.||+|++|++. ++ ....+ .|...|+++ +|+|+| ++||+|+.||+|+|||+++++.
T Consensus 267 ~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 267 SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 45999999986 489999999999999994 43 33333 378899999 678898 8999999999999999999887
Q ss_pred EEEecccCC--ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 96 LRSLKSHTV--AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 96 ~~~l~~h~~--~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+..+.+|.. .|.+++|+|+++.+++++ .|+++++||.+... ......+|...+ ...+++++
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~------~d~tv~lwd~~~~~--~~~~l~gH~~~V---------~sva~Sp~ 408 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSD------GASSLRAVPSRAAF--AVHPLVSRETTI---------TAIGVSRL 408 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEEC------SSSEEEEEETTCTT--CCEEEEECSSCE---------EEEECCSS
T ss_pred ccccccccccCcccceEeCCCcCeEEEeC------CCCcEEEEECcccc--cceeeecCCCce---------EEEEeCCC
Confidence 777767653 589999999999898887 79999999987632 111222343322 23345678
Q ss_pred eeEEEEEcCCCcEEEEEcC
Q 004298 174 FSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~ 192 (763)
+..|++|+.||+|++|+..
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CCBCEEEETTTEEECCBSC
T ss_pred CCeEEEEECCCEEEEEech
Confidence 8899999999999999743
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-16 Score=167.32 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=143.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC---eEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG---KLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g---~~~ 96 (763)
+.|.+++| |+++++|+++.||.|++|++.... ...+. |...|.+++|+|+|++|++|+.||.|++|++.+. +.+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 45999999 999999999999999999995444 43333 7789999999999999999999999999998753 667
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
..+..|...|.++.| ++..+++++ .|+.+++||.......+ ..+.. .+..+.+. ..+.+.
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~------~d~~i~~~d~~~~~~~~----~~~~~-------~v~~~~~~-~~~~~~ 157 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGS------WDKTAKVWKEGSLVYNL----QAHNA-------SVWDAKVV-SFSENK 157 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEE------TTSEEEEEETTEEEEEE----ECCSS-------CEEEEEEE-ETTTTE
T ss_pred cchhhcccCEEEEEe--cCCEEEEEe------CCCCEEEEcCCcEEEec----ccCCC-------ceeEEEEc-cCCCCE
Confidence 888899999999999 467888887 89999999932211111 11111 11122222 125678
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeee-ccc---------ccccccCCCCCceeeec--------------cceeeEEecCC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINI-HKF---------HVAIPNADEQGTCRLLN--------------ASIYKVALSKD 232 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i-~~~---------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD 232 (763)
+++++.||.|++|+.+.. ...+.. +.. .....+++.++.+++|+ ..|.+++|+|+
T Consensus 158 l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 158 FLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 999999999999984432 111111 110 01144666788888887 46899999999
Q ss_pred CCEEEEEeecC
Q 004298 233 LFHLTVLCSGQ 243 (763)
Q Consensus 233 g~~Llv~~~d~ 243 (763)
| .+++++.++
T Consensus 237 ~-~l~~~~~dg 246 (313)
T 3odt_A 237 G-DIVSCGEDR 246 (313)
T ss_dssp S-CEEEEETTS
T ss_pred C-CEEEEecCC
Confidence 9 577776665
No 89
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.72 E-value=3e-16 Score=171.44 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=144.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-CceEEEe--------------cCCCcEEEEEEcc-CCCEEEEEEcCC
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFN-WQRLWTI--------------SPGKSVTSLCWRP-DGKAIAVGLEDG 83 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~~~v~~~--------------~~~~~V~~l~wsp-DG~~Lasg~~Dg 83 (763)
.+.|.+++|+| ++++||+++.||.|++|++. ++....+ .|...|.+++|+| ++++|++|+.||
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 34599999999 99999999999999999993 3332222 1778999999999 888999999999
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCC---ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCc
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ---PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~---~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~ 160 (763)
.|++||+++++....+. +...+.++.|++.+. .+++++ .++.+++||..... ......++..
T Consensus 123 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~d~~~~~--~~~~~~~~~~------ 187 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT------RGPKVQLCDLKSGS--CSHILQGHRQ------ 187 (408)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE------SSSSEEEEESSSSC--CCEEECCCCS------
T ss_pred eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc------CCCeEEEEeCCCcc--eeeeecCCCC------
Confidence 99999999999988886 678999999998554 788887 89999999987531 1111222222
Q ss_pred ccccceecccCCCee-EEEEEcCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 161 DSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
.+..+. ++++++ ++++|+.||.|++|+..... ...+..+... ...............|.+++|+|||++++
T Consensus 188 -~v~~~~--~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 188 -EILAVS--WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---KSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp -CEEEEE--ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---SCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred -cEEEEE--ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---cceeeccccccccCceeEEEEcCCCCEEE
Confidence 222333 445555 79999999999999976432 1111110000 00000111122346789999999999999
Q ss_pred EEeecC
Q 004298 238 VLCSGQ 243 (763)
Q Consensus 238 v~~~d~ 243 (763)
+++.++
T Consensus 262 ~~~~dg 267 (408)
T 4a11_B 262 TVGTDN 267 (408)
T ss_dssp EEETTS
T ss_pred EecCCC
Confidence 988776
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.72 E-value=7.9e-17 Score=177.48 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=138.9
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEe--c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTI--S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~--~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..|.+++|+|++ +++++++.|+.|++|++ +++.+..+ . |...|.+++|+|||++|++|+.||.|++||+++++.+
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 349999999998 79999999999999999 66677777 3 7789999999999999999999999999999999999
Q ss_pred EEe-cccCCc-eeEEEeecCCCceecc---CCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 97 RSL-KSHTVA-VVCLNWEEDAQPSKND---FGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 97 ~~l-~~h~~~-V~~l~ws~~~~~l~s~---s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+ ..|.+. +.++.|+|++.+++++ + .|+.+++||..............+. ..+. ...++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~--~~~~s 276 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------SERQVALWDTKHLEEPLSLQELDTS-------SGVL--LPFFD 276 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTT------CCEEEEEEETTBCSSCSEEEECCCC-------SSCE--EEEEE
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCC------CCceEEEEcCccccCCceEEeccCC-------Ccee--EEEEc
Confidence 998 788775 9999999999999988 5 7999999998763221111000111 1122 22344
Q ss_pred CCeeEE-EEEcCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 172 QRFSIL-CSGDKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 172 ~~~~~L-~sgs~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
++++.| ++|+.||.|++|++.... ...+..+. ...+|.+++|+||+..++
T Consensus 277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~----------------~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS----------------SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC----------------CSSCCSEEEECCGGGSCG
T ss_pred CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc----------------cCCcccceEEecccccce
Confidence 566666 467789999999866432 22221110 124578999999988764
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.72 E-value=3.4e-16 Score=172.54 Aligned_cols=197 Identities=16% Similarity=0.201 Sum_probs=145.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+.+++|++ +.+++++.|+.|++|++ +++....+. |...|++++|+|||++|++|+.||.|++||+++++.++.+.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence 45578886 45777889999999999 555444443 67899999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
+|...|.++.|+ +..+++++ .|+.+++||....... .....++.. .+..+ .+++++++|++|
T Consensus 174 ~~~~~v~~~~~~--~~~l~~~~------~dg~i~i~d~~~~~~~-~~~~~~~~~-------~v~~~--~~~~~~~~l~s~ 235 (401)
T 4aez_A 174 GHQARVGCLSWN--RHVLSSGS------RSGAIHHHDVRIANHQ-IGTLQGHSS-------EVCGL--AWRSDGLQLASG 235 (401)
T ss_dssp CCSSCEEEEEEE--TTEEEEEE------TTSEEEEEETTSSSCE-EEEEECCSS-------CEEEE--EECTTSSEEEEE
T ss_pred CCCCceEEEEEC--CCEEEEEc------CCCCEEEEecccCcce-eeEEcCCCC-------CeeEE--EEcCCCCEEEEE
Confidence 999999999994 56888887 8999999998742111 111112222 22223 345677899999
Q ss_pred cCCCcEEEEEcCce-eeeeeeecccc-----c-----c-ccc--CCCCCceeeec-------------cceeeEEecCCC
Q 004298 181 DKDGSICFNIFGIF-PIGKINIHKFH-----V-----A-IPN--ADEQGTCRLLN-------------ASIYKVALSKDL 233 (763)
Q Consensus 181 s~DG~I~lw~~~~~-~ig~~~i~~~~-----~-----~-~~s--~~~~~~~~l~~-------------~~I~~v~~SpDg 233 (763)
+.||.|++|+.... ....+..+... . . ..+ ++.++.+++|+ ..|.+++|+|+|
T Consensus 236 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS 315 (401)
T ss_dssp ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSS
T ss_pred eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Confidence 99999999987653 22222211111 1 1 123 23688999998 468999999999
Q ss_pred CEEEEEe
Q 004298 234 FHLTVLC 240 (763)
Q Consensus 234 ~~Llv~~ 240 (763)
+.+++++
T Consensus 316 ~~l~~~~ 322 (401)
T 4aez_A 316 KEIMSTH 322 (401)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999875
No 92
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.71 E-value=1.1e-16 Score=175.41 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=125.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc--CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFN--WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~--~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
...|.+++|+| +++++++|+.|++|++|++. ++.+..+. |...|++++|+|||++|++|+.||+|++||+++++.+
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 45699999987 88999999999999999983 44555554 7789999999999999999999999999999999999
Q ss_pred EEecccC-------CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccccccee
Q 004298 97 RSLKSHT-------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 97 ~~l~~h~-------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
..+..+. ..|++++|+|+++++++|+ .|+.+++||..... ..+.....+|...+ . .
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-------~--~ 349 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGY------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRI-------S--C 349 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC------TTSCEEEEETTTCCEEEEECCSCSSCCCCC-------C--E
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEE------CCCCEEEEECCCCceEEEEecccCCCCCce-------E--E
Confidence 8876543 2489999999999999998 89999999976421 11111112333322 2 2
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..+++++.+|++|+.||+|++|++..
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCC
Confidence 34567888999999999999998543
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.71 E-value=1.7e-16 Score=167.75 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=120.5
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|+ +++||+|+.|++|++|++... .+..+. |...|.+++|+|+ |++|++|+.||+|++||++++
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 45999999864 899999999999999999432 444444 7789999999997 899999999999999999876
Q ss_pred e--EEEEecccCCceeEEEeecC-------------CCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccc
Q 004298 94 K--LLRSLKSHTVAVVCLNWEED-------------AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFT 156 (763)
Q Consensus 94 ~--~~~~l~~h~~~V~~l~ws~~-------------~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~ 156 (763)
. ....+.+|...|.+++|+|+ ++.+++++ .|+++++||....... +.....+|...
T Consensus 134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs------~D~~v~lwd~~~~~~~~~~~~~l~~H~~~- 206 (297)
T 2pm7_B 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDW- 206 (297)
T ss_dssp SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE------TTSCEEEEEEETTTTEEEEEEEECCCSSC-
T ss_pred CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc------CCCcEEEEEEcCCCceEEEEEEecCCCCc-
Confidence 3 24567789999999999997 46888888 8999999997642211 11112233332
Q ss_pred cCCcccccceecccCC-CeeEEEEEcCCCcEEEEEcCc
Q 004298 157 DDSEDSFRELANSSHQ-RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+..+.+.+.. .+++|++|+.||+|++|+...
T Consensus 207 ------V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 207 ------VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ------EEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ------eEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 2334443321 248999999999999998654
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.71 E-value=2.5e-16 Score=182.24 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=144.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cC----ceEEEec-CCCc-EEEEEEcc--CCCEEEEEEcCCcEEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NW----QRLWTIS-PGKS-VTSLCWRP--DGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~----~~v~~~~-~~~~-V~~l~wsp--DG~~Lasg~~Dg~V~lwd 89 (763)
...+.|.+++|+|+++++|+++ ++.|.+|++ ++ +.+..+. |... |++++|+| ||++|++|+.||.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 3456799999999999999998 889999999 45 5666665 7788 99999999 999999999999999999
Q ss_pred ccCC--------eEEEEecccCCceeEEEeecCCCceeccCCCCCcccC----CceeecCCCCCCCCCCCcccCCccccc
Q 004298 90 VENG--------KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYED----RTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 90 ve~g--------~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d----~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
+.++ +.+..+..|...|.+++|+|+++.+++++ .+ +.+.+|+.......+. ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~~~~~~~v~~~d~~~~~~~~~----~~~~--- 161 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG------EGRDNFGVFISWDSGNSLGEVS----GHSQ--- 161 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE------CCSSCSEEEEETTTCCEEEECC----SCSS---
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec------cCCCCccEEEEEECCCcceeee----cCCc---
Confidence 9855 77788889999999999999999998887 44 6899999543222222 2222
Q ss_pred CCcccccceecccCCCee-EEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeecc---ceeeEEecCC
Q 004298 158 DSEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNA---SIYKVALSKD 232 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~---~I~~v~~SpD 232 (763)
.+..+. ++++++ ++++|+.||.|++|+...... ..+. .... .|.+++|+||
T Consensus 162 ----~v~~~~--~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 162 ----RINACH--LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR------------------THHKQGSFVRDVEFSPD 217 (615)
T ss_dssp ----CEEEEE--ECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC------------------SSSCTTCCEEEEEECST
T ss_pred ----cEEEEE--ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec------------------ccCCCCceEEEEEECCC
Confidence 122233 445555 899999999999999665432 1221 1112 5889999999
Q ss_pred -CCEEEEEeecC
Q 004298 233 -LFHLTVLCSGQ 243 (763)
Q Consensus 233 -g~~Llv~~~d~ 243 (763)
++.+++++.++
T Consensus 218 ~~~~l~~~~~dg 229 (615)
T 1pgu_A 218 SGEFVITVGSDR 229 (615)
T ss_dssp TCCEEEEEETTC
T ss_pred CCCEEEEEeCCC
Confidence 99999888766
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.70 E-value=7.1e-16 Score=172.86 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+.++.+ +++++++|+.||.|++|++ +++.+..+. |...|.+++|+|++ .|++|+.||+|++||+++++.+..+.+
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 566555 5689999999999999998 677777776 88899999999998 999999999999999999999999999
Q ss_pred cCCceeEEEee--cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCC-c-c------------cccCCcccccc
Q 004298 102 HTVAVVCLNWE--EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGD-T-G------------FTDDSEDSFRE 165 (763)
Q Consensus 102 h~~~V~~l~ws--~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~-~-~------------~~~~~~~~~~~ 165 (763)
|...|.++.|+ +++..+++++ .|+++++||............... . . ........+.
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 274 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGS------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR- 274 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEE------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE-
T ss_pred CCCccEEEEEecCCCCCEEEEEc------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE-
Confidence 99999999998 4678899988 899999999876321110000000 0 0 0000011111
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+..++++++++|+.||.|++|+...... ..+. .+...|.+++|+|+++.+++++.++
T Consensus 275 ---~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 275 ---TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS------------------GHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp ---EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC------------------CCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ---EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------------CCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 1235567899999999999999765322 2211 1224588899999999998887766
No 96
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.70 E-value=6.2e-17 Score=176.00 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=117.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe-
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK- 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~- 94 (763)
.+.|.+++|+|++++||+++.|+.|++|++.. + ....+ .|...|.+++|+|||++|++|+.||.|++||+++++
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 34599999999999999999999999999943 3 34444 378899999999999999999999999999999887
Q ss_pred --EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC-C--CCcc-----cCCcccccCCcccc
Q 004298 95 --LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ-M--PGLV-----SGDTGFTDDSEDSF 163 (763)
Q Consensus 95 --~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~-l--~~~~-----s~~~~~~~~~~~~~ 163 (763)
....+.. |...|++++|+|++..+++++ .|+.+++||....... . +... .+...........+
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 208 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGC------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEE------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEe------CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceE
Confidence 4677877 999999999999999999998 8999999997532100 0 0000 00000000111222
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
..+ .+++++++|++|+.||+|++|+....
T Consensus 209 ~~~--~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 209 HAV--GFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEE--EECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEE--EECCCCCEEEEEeCCCcEEEEECCCC
Confidence 233 34577789999999999999986543
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.2e-16 Score=161.66 Aligned_cols=210 Identities=20% Similarity=0.183 Sum_probs=155.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc----CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN----WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~----~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..|.+++|+|+++++++++.||.|.+|++. ++.+..+. |...|.+++| +++++++|+.||.|++|| .++..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~ 135 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV 135 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence 459999999999999999999999999982 23455554 7788999999 678999999999999999 78888
Q ss_pred EEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
..+..|...|.++.|.| ++..+++++ .|+.+++||.......... .+ ...+..+. +++++.
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~---~~-------~~~i~~~~--~~~~~~ 197 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTAS------ADKTIKLWQNDKVIKTFSG---IH-------NDVVRHLA--VVDDGH 197 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEE------TTSCEEEEETTEEEEEECS---SC-------SSCEEEEE--EEETTE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEE------CCCCEEEEecCceEEEEec---cC-------cccEEEEE--EcCCCe
Confidence 99999999999999998 888898888 8999999994432111111 01 11222233 334555
Q ss_pred EEEEEcCCCcEEEEEcCce-eeeeeeecccc---------cccccCCCCCceeeec--------------cceeeEEecC
Q 004298 176 ILCSGDKDGSICFNIFGIF-PIGKINIHKFH---------VAIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~---------~~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
+++|+.||.|++|+.... .+..+..+... ....+++.++.+++|+ .+|.+++|+|
T Consensus 198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred -EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence 889999999999987643 22233222111 1245667888999997 4789999999
Q ss_pred CCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 232 DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 232 Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
||+ +++++.++ .++++.++...+
T Consensus 277 ~~~-~~~~~~dg------------~i~iw~~~~~~~ 299 (313)
T 3odt_A 277 NGD-IIVGSSDN------------LVRIFSQEKSRW 299 (313)
T ss_dssp TSC-EEEEETTS------------CEEEEESCGGGC
T ss_pred CCC-EEEEeCCC------------cEEEEeCCCCce
Confidence 998 55555554 788888776543
No 98
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.70 E-value=4.1e-16 Score=165.70 Aligned_cols=193 Identities=13% Similarity=0.015 Sum_probs=123.1
Q ss_pred CeEEEEEcCC----CCEEEEEeC--------------------CCeEEEEEc--cCceEEEec-CCCcEEEEEEcc---C
Q 004298 23 QIKIAEWNPE----KDLLAMATE--------------------DSKILLHRF--NWQRLWTIS-PGKSVTSLCWRP---D 72 (763)
Q Consensus 23 ~V~~l~~sP~----~~lLA~~s~--------------------Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wsp---D 72 (763)
.|..++++|+ ++.+++++. |+.|++|.+ +|+.+.... |+..++.++|+| |
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5888999999 888887664 566666666 244444332 555677778888 6
Q ss_pred CCEEEEEEcCCcEEEEEccCCeEEEEecccC---CceeEEEeecCCCceeccCCC------CCcccCCceeecCCCCCCC
Q 004298 73 GKAIAVGLEDGTITLHDVENGKLLRSLKSHT---VAVVCLNWEEDAQPSKNDFGN------IPTYEDRTSRFFPPAPRIP 143 (763)
Q Consensus 73 G~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~---~~V~~l~ws~~~~~l~s~s~~------~~~~~d~~i~~wd~~~~~~ 143 (763)
|..||+|+.|++|+|||+++|++++++.+|. ..+.+++|+|+|..+++++.. .....|+++++||......
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 6889999999999999999999999998754 367888999999877443211 1223799999998765311
Q ss_pred C--CC-CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceee
Q 004298 144 Q--MP-GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRL 219 (763)
Q Consensus 144 ~--l~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l 219 (763)
. +. ....++.... +. .+..+.++++|+.||+|++|+...-. +.++.-|. +
T Consensus 273 l~v~~~~~p~Gh~~~~---------ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~----------~----- 326 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRF---------LE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS----------D----- 326 (356)
T ss_dssp EEEEEECCCTTCCCCE---------EE--EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC-----------------
T ss_pred EEEEEeeccCCCccee---------Ec--cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC----------C-----
Confidence 0 00 0001111100 11 11124579999999999999976532 22221000 0
Q ss_pred eccceeeEEecCCCCEEEEEeecC
Q 004298 220 LNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 220 ~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+..++|||||++|+.++.|+
T Consensus 327 --~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 327 --QHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTS
T ss_pred --CeEEEEEECCCCCEEEEEECCC
Confidence 1233589999999999888766
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.70 E-value=7.2e-16 Score=194.48 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+.|.+++|+|+++++|+++.||.|++|++ +++.+..+. |...|.+++|+| ++.++++|+.||.|++||+++++.+
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 345999999999999999999999999999 677777765 788999999999 5568999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+.+|...|++++|+|++..+++++ .|+++++||...
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s------~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCS------ADGTLRLWDVRS 774 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEE------SSSEEEEEEGGG
T ss_pred heecCCCCCEEEEEEecCCCEEEEEE------CCCeEEEEeCCC
Confidence 99999999999999999999999998 899999998753
No 100
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.70 E-value=1e-15 Score=171.47 Aligned_cols=200 Identities=13% Similarity=0.039 Sum_probs=149.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEc--cCCCEEEEEEcCCcEEEEEccCCe--
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWR--PDGKAIAVGLEDGTITLHDVENGK-- 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~ws--pDG~~Lasg~~Dg~V~lwdve~g~-- 94 (763)
.+.|.+++|+|++ ++++|+.||+|++|++ +++.+..+. |...|.+++|+ |+++++++|+.||.|++||+++++
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 3459999999988 9999999999999999 667777776 78899999999 588999999999999999998765
Q ss_pred ---------------------EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 95 ---------------------LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 95 ---------------------~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
.+..+.+|...|.++ ++++..+++++ .|+.+++||..... ......++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~------~d~~i~vwd~~~~~--~~~~~~~~~ 310 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS------YDNTLIVWDVAQMK--CLYILSGHT 310 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE------TTSCEEEEETTTTE--EEEEECCCS
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe------CCCeEEEEECCCCc--EEEEecCCC
Confidence 255677888888887 56788899988 89999999987521 111111222
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeeccc--------ccccccCCCCCceeeec---
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKF--------HVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~--------~~~~~s~~~~~~~~l~~--- 221 (763)
. .+.. ..++++++.+++|+.||+|++|+.... .+..+..+.. .....+++.++.+++|+
T Consensus 311 ~-------~v~~--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 311 D-------RIYS--TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp S-------CEEE--EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred C-------CEEE--EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 2 1222 334567789999999999999987542 2233322221 12234677899999997
Q ss_pred ----------cceeeEEecCCCCEEEEEe
Q 004298 222 ----------ASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~~Llv~~ 240 (763)
..+..++|+++++.+++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 382 YSRKFSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred CceeeeecCCCCccEEEEEeCCCEEEEec
Confidence 2456679999999888766
No 101
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.69 E-value=2.4e-16 Score=168.22 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=119.2
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEcc-C--ceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFN-W--QRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~-~--~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+| ++++||+++.|++|++|++. + +.+..+. |...|++++|+|+ |++|++|+.||+|++||++++
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 4599999986 48999999999999999994 3 3555554 7789999999998 889999999999999999876
Q ss_pred eE---EEEecccCCceeEEEeecC-----------------CCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCC
Q 004298 94 KL---LRSLKSHTVAVVCLNWEED-----------------AQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGD 152 (763)
Q Consensus 94 ~~---~~~l~~h~~~V~~l~ws~~-----------------~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~ 152 (763)
.. ...+.+|...|.++.|+|+ +..+++++ .|+++++||...... .......+|
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG------CDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB------TTSBCCEEEECTTSCEEEEECCBCC
T ss_pred CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec------CCCeEEEEEeCCCCccceeeecccC
Confidence 32 3456789999999999997 36788888 899999999853210 011112233
Q ss_pred cccccCCcccccceecccCC--CeeEEEEEcCCCcEEEEEcCc
Q 004298 153 TGFTDDSEDSFRELANSSHQ--RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~--~~~~L~sgs~DG~I~lw~~~~ 193 (763)
... +..+.+.+.. ..++|++|+.||+|++|+...
T Consensus 212 ~~~-------V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 212 SDW-------VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SSC-------EEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCc-------eEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 322 2334443322 237899999999999998654
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.3e-16 Score=174.09 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=141.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEccC----c---eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc-
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFNW----Q---RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE- 91 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~----~---~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve- 91 (763)
.+.|.+++|+| ++++||+|+.||+|+||++.. . ....+.|...|++++|+|++++|++|+.||.|++||++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 34599999999 999999999999999999832 2 24455688999999999999999999999999999995
Q ss_pred --CCeEEEEecc------------cCCceeEEE--eecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccC--Cc
Q 004298 92 --NGKLLRSLKS------------HTVAVVCLN--WEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSG--DT 153 (763)
Q Consensus 92 --~g~~~~~l~~------------h~~~V~~l~--ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~--~~ 153 (763)
+++....+.. +...+.++. |++++..+++++ .|+.+++||...... .....+ +.
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~~~~~h~ 214 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT------NLSRVIIFDIRTLER--LQIIENSPRH 214 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE------TTSEEEEEETTTCCE--EEEEECCGGG
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCee--eEEEccCCCC
Confidence 5655544432 445666666 557888999988 899999999876311 111111 11
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeE----E
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKV----A 228 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v----~ 228 (763)
..+..+ .+++++++|++|+.||+|++|+...... ..+... .+.+|.++ +
T Consensus 215 -------~~v~~~--~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~ 268 (437)
T 3gre_A 215 -------GAVSSI--CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-----------------DHAPITHVEVCQF 268 (437)
T ss_dssp -------CCEEEE--EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-----------------TCEEEEEEEECTT
T ss_pred -------CceEEE--EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-----------------CCCceEEEEeccc
Confidence 122223 3457788999999999999999765321 222100 11357788 5
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
|+||+..+++++.|+ .++++.+..
T Consensus 269 ~s~~~~~l~s~~~dg------------~i~iwd~~~ 292 (437)
T 3gre_A 269 YGKNSVIVVGGSSKT------------FLTIWNFVK 292 (437)
T ss_dssp TCTTEEEEEEESTTE------------EEEEEETTT
T ss_pred cCCCccEEEEEcCCC------------cEEEEEcCC
Confidence 556777888776655 677776654
No 103
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.69 E-value=1.9e-16 Score=172.82 Aligned_cols=163 Identities=7% Similarity=0.042 Sum_probs=125.2
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCC--
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDG-- 83 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg-- 83 (763)
..++++.+.+. |.+++|+|+|+++++++.++.+.+|..+++.+.... |+..|.+++|+|||+++++++.|+
T Consensus 168 ~~~~~~~~~~~----V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~ 243 (365)
T 4h5i_A 168 TEKFEIETRGE----VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK 243 (365)
T ss_dssp EEEEEEECSSC----CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred cEEEEeCCCCc----eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence 33445555544 999999999999999997765555555777665432 667899999999999999999887
Q ss_pred --cEEEEEccCCeE----EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 84 --TITLHDVENGKL----LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 84 --~V~lwdve~g~~----~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
.+++|++..+.. .+.+.+|...|++++|+|+|+++++|+ .|++|++||..... .+.....+|...+
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs------~D~~V~iwd~~~~~-~~~~~~~gH~~~V- 315 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS------NDNSIALVKLKDLS-MSKIFKQAHSFAI- 315 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE------TTSCEEEEETTTTE-EEEEETTSSSSCE-
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc------CCCEEEEEECCCCc-EEEEecCcccCCE-
Confidence 688899887653 356778999999999999999999998 89999999987531 1111123444333
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
...+++|++++|++|+.||+|++|++
T Consensus 316 --------~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 316 --------TEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp --------EEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred --------EEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 33456788999999999999999985
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.4e-16 Score=166.08 Aligned_cols=184 Identities=8% Similarity=-0.059 Sum_probs=130.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce----------EEEe--cCCCcEEEEEEcc--CCCEEEEEEcCCcEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR----------LWTI--SPGKSVTSLCWRP--DGKAIAVGLEDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~----------v~~~--~~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lw 88 (763)
.|.++.|+|+ +++++.|++|++|+.+++. +..+ .|...|.+++|+| +|+++++|+.||+|++|
T Consensus 78 ~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 78 NPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154 (343)
T ss_dssp CCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred CceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 3777888988 8999999999999875331 2222 2446799999999 99999999999999999
Q ss_pred EccCCeEEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccC-CcccccCCcccccce
Q 004298 89 DVENGKLLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSG-DTGFTDDSEDSFREL 166 (763)
Q Consensus 89 dve~g~~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~-~~~~~~~~~~~~~~~ 166 (763)
|+++++.+..... |...|++++|+|++.++++|+ .|+.+++||.+..... .....+ |... +..
T Consensus 155 d~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~------~dg~i~iwd~~~~~~~-~~~~~~~h~~~-------v~~- 219 (343)
T 3lrv_A 155 SYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS------PDGILDVYNLSSPDQA-SSRFPVDEEAK-------IKE- 219 (343)
T ss_dssp ESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC------TTSCEEEEESSCTTSC-CEECCCCTTSC-------EEE-
T ss_pred ECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc------CCCEEEEEECCCCCCC-ccEEeccCCCC-------EEE-
Confidence 9999998776643 456899999999999999988 8999999999864221 011112 3222 223
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccce--eeEEecCCCCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASI--YKVALSKDLFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I--~~v~~SpDg~~Llv~~~ 241 (763)
..+++++.+|++|+ |++|++|+...... ..+.... .. ...+ .+++|+|+|++|++++.
T Consensus 220 -l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 220 -VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----------IP-----EFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp -EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----------C----------CCEEEEECTTSSEEEEEET
T ss_pred -EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----------cc-----cccccceEEEECCCCCEEEEecC
Confidence 34567788999999 55999999765321 1111000 00 0112 36999999999998765
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-15 Score=170.06 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc---eEEEec----------------------------------------
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQ---RLWTIS---------------------------------------- 59 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~---~v~~~~---------------------------------------- 59 (763)
+.+++|+|+|++++++ .++.|.+|++ +|+ .+....
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 8899999999976655 5789999998 676 433322
Q ss_pred ---------------CCCcEEEEEEccCCCEE-EEEEcCCcEEEEEcc--CCeEEEEec--ccCCceeEEEeecCCCcee
Q 004298 60 ---------------PGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVE--NGKLLRSLK--SHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 60 ---------------~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve--~g~~~~~l~--~h~~~V~~l~ws~~~~~l~ 119 (763)
+...|++++|+|||++| ++|+.||.|++||+. +++.+..+. .|...|++++|+|++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 11259999999999996 889999999999999 888888886 5678999999999999999
Q ss_pred ccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCC---eeEEEEEcCCCcEEEEEcCce
Q 004298 120 NDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQR---FSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 120 s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+++ .++.+.+|+....... ......++.. .+..+. ++++ +++|++|+.||+|++|++...
T Consensus 166 ~~~------~~g~v~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~--~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 166 IAD------KFGDVYSIDINSIPEEKFTQEPILGHVS-------MLTDVH--LIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEE------TTSEEEEEETTSCCCSSCCCCCSEECSS-------CEEEEE--EEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred EEe------CCCcEEEEecCCcccccccceeeecccC-------ceEEEE--EcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 997 7999999987653211 1111122222 223333 3455 789999999999999986532
Q ss_pred e-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 195 P-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 195 ~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
. +..+. .-+...|.+++|+ ||++|++++.|+ .++++.+...
T Consensus 231 ~~~~~~~-----------------~~h~~~v~~~~~s-d~~~l~s~~~d~------------~v~vwd~~~~ 272 (450)
T 2vdu_B 231 FIVDKWL-----------------FGHKHFVSSICCG-KDYLLLSAGGDD------------KIFAWDWKTG 272 (450)
T ss_dssp TCEEEEC-----------------CCCSSCEEEEEEC-STTEEEEEESSS------------EEEEEETTTC
T ss_pred ceeeeee-----------------cCCCCceEEEEEC-CCCEEEEEeCCC------------eEEEEECCCC
Confidence 1 11110 0122468899999 999999887765 7778876654
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.66 E-value=3.9e-15 Score=165.93 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=147.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...|.+++| +++++++|+.||.|++|++ +++.+..+. |...|.+++| ++++|++|+.||+|++||+++++.+..
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 345877766 7899999999999999999 677777776 7889999998 889999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC-CCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|...|.++.|++ ..+++++ .|+.+++||........ .....++.. .+..+.+ +++.+
T Consensus 209 ~~~h~~~v~~l~~~~--~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~v~~~~~----~~~~l 269 (435)
T 1p22_A 209 LIHHCEAVLHLRFNN--GMMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRA-------AVNVVDF----DDKYI 269 (435)
T ss_dssp ECCCCSCEEEEECCT--TEEEEEE------TTSCEEEEECSSSSCCEEEEEECCCSS-------CEEEEEE----ETTEE
T ss_pred EcCCCCcEEEEEEcC--CEEEEee------CCCcEEEEeCCCCCCceeeeEecCCCC-------cEEEEEe----CCCEE
Confidence 999999999999974 4788887 89999999987532110 011122222 2222322 45789
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeecccc--------cccccCCCCCceeeec--------------cceeeEEecCCCC
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKFH--------VAIPNADEQGTCRLLN--------------ASIYKVALSKDLF 234 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~~--------~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~ 234 (763)
++|+.||.|++|+.... .+..+..+... ....+++.++.+++|+ ..|.+++| |++
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSS
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCC
Confidence 99999999999987653 22223222211 1234667888999997 35777777 778
Q ss_pred EEEEEeecC
Q 004298 235 HLTVLCSGQ 243 (763)
Q Consensus 235 ~Llv~~~d~ 243 (763)
.+++++.++
T Consensus 348 ~l~sg~~dg 356 (435)
T 1p22_A 348 RIVSGAYDG 356 (435)
T ss_dssp EEEEEETTS
T ss_pred EEEEEeCCC
Confidence 888887766
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.65 E-value=7.3e-15 Score=164.01 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=150.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+ ++.+++++.||.|++|++ +++.+..+. |...|.+++| +|+++++|+.||.|++||+++++.+..+
T Consensus 200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 348888886 567999999999999998 566666664 7778999988 7889999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.| ++..+++++ .|+.+++||..... ......++...+ ..+. .+++++++
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~------~d~~i~i~d~~~~~--~~~~~~~~~~~v-------~~~~----~~~~~l~~ 334 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGS------LDTSIRVWDVETGN--CIHTLTGHQSLT-------SGME----LKDNILVS 334 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEE------TTSCEEEEETTTCC--EEEEECCCCSCE-------EEEE----EETTEEEE
T ss_pred cCCCCceEEEEE--CCCEEEEEe------CCCeEEEEECCCCC--EEEEEcCCcccE-------EEEE----EeCCEEEE
Confidence 999999999999 678888887 79999999987531 111111222111 1121 23468999
Q ss_pred EcCCCcEEEEEcCce-eeeeeee---ccc--------ccccccCCCCCceeeec-------------------cceeeEE
Q 004298 180 GDKDGSICFNIFGIF-PIGKINI---HKF--------HVAIPNADEQGTCRLLN-------------------ASIYKVA 228 (763)
Q Consensus 180 gs~DG~I~lw~~~~~-~ig~~~i---~~~--------~~~~~s~~~~~~~~l~~-------------------~~I~~v~ 228 (763)
|+.||.|++|+.... .+..+.. +.. .....+++.++.+++|+ +.|.+++
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 414 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence 999999999987543 2222221 111 11234667788899987 3478899
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
|+|+|..+++++.++. ....++++.++.
T Consensus 415 ~s~~~~~la~~~~dg~--------~~~~l~v~df~~ 442 (445)
T 2ovr_B 415 ASNTKLVCAVGSRNGT--------EETKLLVLDFDV 442 (445)
T ss_dssp ECSSEEEEEEECSSSS--------SCCEEEEEECCC
T ss_pred ecCCEEEEEEcccCCC--------CccEEEEEECCC
Confidence 9999998888876651 122466666553
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.7e-15 Score=160.94 Aligned_cols=157 Identities=16% Similarity=0.263 Sum_probs=123.0
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|+ +++|++++.||.|++|++... .+..+. |...|.+++|+|+ |++|++|+.||.|++||+.++
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 45999999987 899999999999999999443 444444 7789999999999 999999999999999999877
Q ss_pred --eEEEEecccCCceeEEEeec-------------CCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccc
Q 004298 94 --KLLRSLKSHTVAVVCLNWEE-------------DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFT 156 (763)
Q Consensus 94 --~~~~~l~~h~~~V~~l~ws~-------------~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~ 156 (763)
.....+..|...|.++.|+| ++..+++++ .|+.+++||....... ......++..
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~h~~-- 207 (379)
T 3jrp_A 136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG------ADNLVKIWKYNSDAQTYVLESTLEGHSD-- 207 (379)
T ss_dssp SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE------TTSCEEEEEEETTTTEEEEEEEECCCSS--
T ss_pred CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe------CCCeEEEEEecCCCcceeeEEEEecccC--
Confidence 34456778999999999999 688899988 8999999998653211 1011112222
Q ss_pred cCCcccccceecccCCC---eeEEEEEcCCCcEEEEEcCc
Q 004298 157 DDSEDSFRELANSSHQR---FSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~~---~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+..+ .++++ +++|++|+.||.|++|+...
T Consensus 208 -----~v~~~--~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 208 -----WVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CEEEE--EECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred -----cEeEE--EECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 22233 34566 78999999999999998765
No 109
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.64 E-value=5.4e-15 Score=171.03 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=142.5
Q ss_pred CCC-eEEEEEcC--CCCEEEEEeCCCeEEEEEc-cC--------ceEEEec-CCCcEEEEEEccCCCEEEEEEcC----C
Q 004298 21 ASQ-IKIAEWNP--EKDLLAMATEDSKILLHRF-NW--------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLED----G 83 (763)
Q Consensus 21 ~~~-V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~--------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D----g 83 (763)
... |.+++|+| ++++||+++.||.|++|++ ++ +.+..+. |...|.+++|+|||++|++++.+ +
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 142 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG 142 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCcc
Confidence 456 99999999 9999999999999999999 33 3444444 77899999999999999999988 6
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
.|++|| +++.+..+.+|...|+++.|+|++. .+++++ .|+.+++||..... ......++.. ....
T Consensus 143 ~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~v~vwd~~~~~--~~~~~~~~~~----~~~~ 208 (615)
T 1pgu_A 143 VFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVG------DDGSVVFYQGPPFK--FSASDRTHHK----QGSF 208 (615)
T ss_dssp EEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEE------TTTEEEEEETTTBE--EEEEECSSSC----TTCC
T ss_pred EEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEe------CCCcEEEEeCCCcc--eeeeecccCC----CCce
Confidence 888888 6788899999999999999999997 688887 89999999976521 1111111211 0002
Q ss_pred ccceecccCCC-eeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 163 FRELANSSHQR-FSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 163 ~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
+..+ .++++ +++|++|+.||.|++|+...... ..+... . ......|.+++|+ +++.+++++
T Consensus 209 v~~~--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~----------~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 209 VRDV--EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD----Q----------EPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp EEEE--EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT----T----------BCCCSCEEEEEES-SSSEEEEEE
T ss_pred EEEE--EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc----c----------cccCCceEEEEEc-CCCEEEEEc
Confidence 2223 34567 88999999999999999654321 111000 0 0112468899999 999999888
Q ss_pred ecC
Q 004298 241 SGQ 243 (763)
Q Consensus 241 ~d~ 243 (763)
.++
T Consensus 272 ~d~ 274 (615)
T 1pgu_A 272 ADA 274 (615)
T ss_dssp TTS
T ss_pred CCC
Confidence 765
No 110
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-15 Score=180.95 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=123.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL---- 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~---- 96 (763)
..|.+++|+| +++||+++.|++|++|++ +++.+..+.+...|++++|+|+|++|++|+.||.|++||+++++..
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 4599999999 889999999999999999 6777777777789999999999999999999999999999988764
Q ss_pred -------EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCC--CCCCc-----ccCCc--ccccCC
Q 004298 97 -------RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMPGL-----VSGDT--GFTDDS 159 (763)
Q Consensus 97 -------~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~~~-----~s~~~--~~~~~~ 159 (763)
..+.+|.+.|++++|+|++ ..+++++ .|+.+ +||...... .+..+ ..+.. ......
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEe------CCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 2346788999999999964 6777777 89999 999876311 01110 00000 000000
Q ss_pred cccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 160 EDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...+.. ..+++++++|++|+.||+|++|+...
T Consensus 211 ~~~V~~--v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 211 TPKVIQ--SLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp CCCEEE--EEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCCeEE--EEEcCCCCEEEEEECCCeEEEEECCC
Confidence 122333 34567788999999999999999754
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.63 E-value=1.9e-15 Score=160.30 Aligned_cols=113 Identities=22% Similarity=0.313 Sum_probs=96.8
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEccC----------ceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFNW----------QRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~~----------~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~ 86 (763)
..|.+++|+| ++++|++++.||.|++|++.. +.+..+. |...|.+++|+|+ +++|++|+.||.|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 4599999999 599999999999999999944 3355554 7789999999999 99999999999999
Q ss_pred EEEccCCe------------------------------------------------------------EEEEecccCCce
Q 004298 87 LHDVENGK------------------------------------------------------------LLRSLKSHTVAV 106 (763)
Q Consensus 87 lwdve~g~------------------------------------------------------------~~~~l~~h~~~V 106 (763)
+||+++++ .+..+.+|...|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 99987543 145566789999
Q ss_pred eEEEeecCC----CceeccCCCCCcccCCceeecCCCC
Q 004298 107 VCLNWEEDA----QPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 107 ~~l~ws~~~----~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++++|+|++ .++++++ .|+.+++||...
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~------~dg~i~iwd~~~ 249 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGC------KDGRIRIFKITE 249 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEE------TTSCEEEEEEEE
T ss_pred eEEEECCCCCCcceEEEEEc------CCCeEEEEeCCC
Confidence 999999998 7899988 899999998765
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.62 E-value=3.3e-15 Score=158.77 Aligned_cols=151 Identities=12% Similarity=0.037 Sum_probs=110.3
Q ss_pred CeEEEEEcC---CCCEEEEEeCCCeEEEEEc-cCceEEEec-C---CCcEEEEEEccCCCEE------------EEEEcC
Q 004298 23 QIKIAEWNP---EKDLLAMATEDSKILLHRF-NWQRLWTIS-P---GKSVTSLCWRPDGKAI------------AVGLED 82 (763)
Q Consensus 23 ~V~~l~~sP---~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~---~~~V~~l~wspDG~~L------------asg~~D 82 (763)
.|..++|+| ++++||+++.|++|+||++ +|+.+.++. + ...+.+++|+|||+++ ++|+.|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 477778888 6688999999999999999 688888886 2 2367888999999987 668899
Q ss_pred CcEEEEEccCCeEEEEe-----cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 83 GTITLHDVENGKLLRSL-----KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l-----~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
++|++||..+|+.+..+ .+|...+.+..++ +..+++++ .|+++++||..... ......+|...+
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS------~DgTIkIWDl~tGk--~l~tL~gH~~~v- 328 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAIL------TSGTIAIWDLLLGQ--CTALLPPVSDQH- 328 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEE------TTSCEEEEETTTCS--EEEEECCC--CC-
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEc------CCCcEEEEECCCCc--EEEEecCCCCCe-
Confidence 99999999999988765 3666555444444 77888887 89999999997631 111122222211
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
+ ....+++++++|++|+.||+|++|++
T Consensus 329 -----v--s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 -----W--SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----C--CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----E--EEEEECCCCCEEEEEECCCcEEEecC
Confidence 0 11346788999999999999999984
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.62 E-value=1e-14 Score=158.37 Aligned_cols=203 Identities=11% Similarity=0.010 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCC----------------------------
Q 004298 24 IKIAEWNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDG---------------------------- 73 (763)
Q Consensus 24 V~~l~~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG---------------------------- 73 (763)
+..++|+++++.++ +++.|++|++|+. +++.+..+.+...|.+++|++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence 55566666666554 3455678999998 67777777777788888888753
Q ss_pred -------CEEEE--EEcCCcEEEEEccCCe----------------EEEEecccCCceeEEEeecCCCceeccCCCCCcc
Q 004298 74 -------KAIAV--GLEDGTITLHDVENGK----------------LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTY 128 (763)
Q Consensus 74 -------~~Las--g~~Dg~V~lwdve~g~----------------~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~ 128 (763)
+++|+ |+.||.|++||+.+++ .+..+.+|...|++++|+|++.++++++
T Consensus 141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s------ 214 (355)
T 3vu4_A 141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS------ 214 (355)
T ss_dssp EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE------
T ss_pred ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe------
Confidence 34455 4689999999998765 2678899999999999999999999998
Q ss_pred cCCc-eeecCCCCCCCCCCCccc-C-CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeee-ccc
Q 004298 129 EDRT-SRFFPPAPRIPQMPGLVS-G-DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINI-HKF 204 (763)
Q Consensus 129 ~d~~-i~~wd~~~~~~~l~~~~s-~-~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i-~~~ 204 (763)
.|++ +++||..... ...... + +.. .+. ...+++++++|++|+.||+|++|++.......... ...
T Consensus 215 ~d~~~v~iwd~~~~~--~~~~~~~g~h~~-------~v~--~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~ 283 (355)
T 3vu4_A 215 QDGTIIRVFKTEDGV--LVREFRRGLDRA-------DVV--DMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW 283 (355)
T ss_dssp TTCSEEEEEETTTCC--EEEEEECTTCCS-------CEE--EEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred CCCCEEEEEECCCCc--EEEEEEcCCCCC-------cEE--EEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence 8998 9999987531 111111 1 222 222 33456788899999999999999876432211111 000
Q ss_pred --ccccccCCCCCceeeec---cceeeEEecCCCCEEEEEeecC
Q 004298 205 --HVAIPNADEQGTCRLLN---ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 205 --~~~~~s~~~~~~~~l~~---~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+....+........+.. .+...++|++||+.+++.+.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 00000000000111111 1235689999999999998766
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.61 E-value=1.6e-14 Score=156.69 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=108.6
Q ss_pred CEEEE--EeCCCeEEEEEccCce-----------------EEEec-CCCcEEEEEEccCCCEEEEEEcCCc-EEEEEccC
Q 004298 34 DLLAM--ATEDSKILLHRFNWQR-----------------LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGT-ITLHDVEN 92 (763)
Q Consensus 34 ~lLA~--~s~Dg~V~v~~l~~~~-----------------v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~-V~lwdve~ 92 (763)
.++|+ |+.||.|++|++.... +..+. |...|++++|+|||++||+|+.||+ |++||+++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 34555 4677888888884322 34443 7789999999999999999999998 99999999
Q ss_pred CeEEEEec-c-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc---------ccCCcccc---cC
Q 004298 93 GKLLRSLK-S-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL---------VSGDTGFT---DD 158 (763)
Q Consensus 93 g~~~~~l~-~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~---------~s~~~~~~---~~ 158 (763)
++.+..+. + |...|.+++|+|+++++++++ .|+++++||........... ......+. ..
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVS------DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEE------TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE------CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec
Confidence 99999998 5 999999999999999999998 89999999986531111000 00000000 00
Q ss_pred CcccccceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 159 SEDSFRELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
...........+.++++.+++++.||.+++|.+
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 000000122345677889999999999999974
No 115
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.60 E-value=2.4e-14 Score=159.42 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=146.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE---
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL--- 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~--- 96 (763)
+.|.+++| +++++++|+.||.|++|++ +++.+..+. |...|.+++|++ ..+++|+.||.|++||+++++..
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee
Confidence 45999998 7889999999999999999 677777775 778899999974 59999999999999999987654
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
..+.+|...|.++.| ++..+++++ .|+.+++||..... ......++... +..+.+ ++++
T Consensus 250 ~~~~~~~~~v~~~~~--~~~~l~s~~------~dg~i~vwd~~~~~--~~~~~~~~~~~-------v~~~~~----~~~~ 308 (435)
T 1p22_A 250 RVLVGHRAAVNVVDF--DDKYIVSAS------GDRTIKVWNTSTCE--FVRTLNGHKRG-------IACLQY----RDRL 308 (435)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEE------TTSEEEEEETTTCC--EEEEEECCSSC-------EEEEEE----ETTE
T ss_pred eEecCCCCcEEEEEe--CCCEEEEEe------CCCeEEEEECCcCc--EEEEEcCCCCc-------EEEEEe----CCCE
Confidence 677889999999999 678888888 89999999987531 11111222221 122222 3468
Q ss_pred EEEEcCCCcEEEEEcCce-eeeeeeeccc--------ccccccCCCCCceeeec-----------------------cce
Q 004298 177 LCSGDKDGSICFNIFGIF-PIGKINIHKF--------HVAIPNADEQGTCRLLN-----------------------ASI 224 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~-~ig~~~i~~~--------~~~~~s~~~~~~~~l~~-----------------------~~I 224 (763)
+++|+.||+|++|+.... .+..+..+.. .....+++.++.+++|+ ++|
T Consensus 309 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v 388 (435)
T 1p22_A 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388 (435)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC
T ss_pred EEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe
Confidence 999999999999987643 2223322221 11234667788888886 246
Q ss_pred eeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 225 YKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 225 ~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.+++| |++.+++++.|+ .++++.++..
T Consensus 389 ~~l~~--~~~~l~s~s~Dg------------~i~iwd~~~~ 415 (435)
T 1p22_A 389 FRLQF--DEFQIVSSSHDD------------TILIWDFLND 415 (435)
T ss_dssp CCEEE--CSSCEEECCSSS------------EEEEEC----
T ss_pred EEEEe--CCCEEEEEeCCC------------EEEEEECCCC
Confidence 66777 677777766555 7777776654
No 116
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.60 E-value=5.9e-14 Score=156.63 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=142.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|.+++|+ ++++++++.||.|++|++ +++.+..+. |...|.+++|+ ++.+++|+.||.|++||+++++.+..
T Consensus 159 ~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~ 234 (445)
T 2ovr_B 159 TGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV 234 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred CCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 3459999998 579999999999999999 666677765 77889999995 57899999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...|.++.| ++..+++++ .|+.+++||..... ......++.. .+..+.+ +++.++
T Consensus 235 ~~~~~~~v~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~--~~~~~~~~~~-------~v~~~~~----~~~~l~ 293 (445)
T 2ovr_B 235 LMGHVAAVRCVQY--DGRRVVSGA------YDFMVKVWDPETET--CLHTLQGHTN-------RVYSLQF----DGIHVV 293 (445)
T ss_dssp EECCSSCEEEEEE--CSSCEEEEE------TTSCEEEEEGGGTE--EEEEECCCSS-------CEEEEEE----CSSEEE
T ss_pred EcCCcccEEEEEE--CCCEEEEEc------CCCEEEEEECCCCc--EeEEecCCCC-------ceEEEEE----CCCEEE
Confidence 9999999999999 678888887 89999999976421 1111112211 1222222 557899
Q ss_pred EEcCCCcEEEEEcCcee-eeeeeeccc--------ccccccCCCCCceeeec-----------------cceeeEEecCC
Q 004298 179 SGDKDGSICFNIFGIFP-IGKINIHKF--------HVAIPNADEQGTCRLLN-----------------ASIYKVALSKD 232 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~-ig~~~i~~~--------~~~~~s~~~~~~~~l~~-----------------~~I~~v~~SpD 232 (763)
+|+.||.|++|+..... +..+..+.. .....+++.++.+++|+ .+|.+++|+
T Consensus 294 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 371 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-- 371 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred EEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence 99999999999876532 222222111 11234666788899887 246677775
Q ss_pred CCEEEEEeecC
Q 004298 233 LFHLTVLCSGQ 243 (763)
Q Consensus 233 g~~Llv~~~d~ 243 (763)
++++++++.++
T Consensus 372 ~~~l~s~~~dg 382 (445)
T 2ovr_B 372 KNFVITSSDDG 382 (445)
T ss_dssp SSEEEEEETTS
T ss_pred CCEEEEEeCCC
Confidence 57788777666
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.60 E-value=9.2e-14 Score=151.63 Aligned_cols=182 Identities=14% Similarity=0.075 Sum_probs=134.6
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLL-AMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lL-A~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~l 99 (763)
.+.+++|+|+++.+ ++++.|+.|++|++ +++.+..+..+..+.+++|+|||++|++++ .++.|++||+.+++.+..+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence 38999999999876 56668999999999 777778887777999999999999886655 6799999999999998888
Q ss_pred cccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE-
Q 004298 100 KSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL- 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L- 177 (763)
..| ..+.+++|+|+++.+ ++++ .++.+++||...... ......+ .....+ .++++++.+
T Consensus 113 ~~~-~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~--~~~~~~~--------~~~~~~--~~~~dg~~l~ 173 (391)
T 1l0q_A 113 KTG-KSPLGLALSPDGKKLYVTNN------GDKTVSVINTVTKAV--INTVSVG--------RSPKGI--AVTPDGTKVY 173 (391)
T ss_dssp ECS-SSEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEE--EEEEECC--------SSEEEE--EECTTSSEEE
T ss_pred eCC-CCcceEEECCCCCEEEEEeC------CCCEEEEEECCCCcE--EEEEecC--------CCcceE--EECCCCCEEE
Confidence 754 578999999999876 5666 799999999865210 0000101 111122 344555555
Q ss_pred EEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 178 CSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++.+|.|++|+......-.... ....+..++|+|||++++++..
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVK------------------VEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE------------------CSSEEEEEEECTTSSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe------------------cCCCccceEECCCCCEEEEEec
Confidence 788899999999976543221100 0124678999999999998875
No 118
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.58 E-value=4.8e-14 Score=150.12 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=119.1
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEK--DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
...|..++|++++ .++++++.|+.|++|++ +++.+..+. |...|++++|+|||++|++|+.||.|++||+++++.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence 4569999999875 57889999999999999 555555554 7789999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCC-----CcccCCcccccCCcccccceecc
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMP-----GLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~-----~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
..+.. ...|.++.|+|++.+++++ .|+.+++||..... ..+. ....++. ..+. ..+
T Consensus 251 ~~~~~-~~~v~~~~~~~~~~~~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~-------~~v~--~l~ 313 (340)
T 4aow_A 251 YTLDG-GDIINALCFSPNRYWLCAA-------TGPSIKIWDLEGKIIVDELKQEVISTSSKAEP-------PQCT--SLA 313 (340)
T ss_dssp EEEEC-SSCEEEEEECSSSSEEEEE-------ETTEEEEEETTTTEEEEEECCC-------CCC-------CCEE--EEE
T ss_pred eeecC-CceEEeeecCCCCceeecc-------CCCEEEEEECCCCeEEEeccccceeeeccCCC-------CCEE--EEE
Confidence 98875 4689999999988766655 58999999987531 0000 0011121 1222 234
Q ss_pred cCCCeeEEEEEcCCCcEEEEEc
Q 004298 170 SHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
+++++++|++|+.||+|++|+.
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeC
Confidence 5678889999999999999984
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.1e-14 Score=171.79 Aligned_cols=158 Identities=16% Similarity=0.262 Sum_probs=123.4
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccC
Q 004298 21 ASQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 21 ~~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~ 92 (763)
.+.|.+++|+|+ ++++++|+.||.|++|++... .+..+. |...|++++|+|+ |+.+++|+.||.|++||+.+
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 345999999998 999999999999999999544 444444 7889999999999 99999999999999999987
Q ss_pred C--eEEEEecccCCceeEEEeec-------------CCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCccc
Q 004298 93 G--KLLRSLKSHTVAVVCLNWEE-------------DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGF 155 (763)
Q Consensus 93 g--~~~~~l~~h~~~V~~l~ws~-------------~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~ 155 (763)
+ .....+.+|...|.++.|+| ++..+++++ .|+.+++||....... ......++..
T Consensus 133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~~~~h~~- 205 (753)
T 3jro_A 133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG------ADNLVKIWKYNSDAQTYVLESTLEGHSD- 205 (753)
T ss_dssp SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE------TTSCEEEEEEETTTTEEEEEEEECCCSS-
T ss_pred CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE------CCCeEEEEeccCCcccceeeeeecCCCC-
Confidence 6 34456678999999999999 588899988 8999999998753211 1111112222
Q ss_pred ccCCcccccceecccCCC---eeEEEEEcCCCcEEEEEcCc
Q 004298 156 TDDSEDSFRELANSSHQR---FSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~---~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+..+ .++++ ++++++|+.||.|++|+...
T Consensus 206 ------~V~~l--~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 206 ------WVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CEEEE--EECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ------cEEEE--EeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 22233 34456 78999999999999998765
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.56 E-value=2.6e-14 Score=159.16 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=122.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-C---ceEEEe-cCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccC-
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFN-W---QRLWTI-SPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVEN- 92 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~---~~v~~~-~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~- 92 (763)
...|.+++|+| ++.++++++.||.|++|++. + ..+..+ .|...|++++|+|+|+ ++++|+.||.|++||+++
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 34599999999 67899999999999999994 3 355555 4788999999999997 689999999999999997
Q ss_pred CeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCC------------CCCcccCCcccccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQ------------MPGLVSGDTGFTDDS 159 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~------------l~~~~s~~~~~~~~~ 159 (763)
++.+..+..|...|+++.|+|++. .+++++ .|+.+++||+...... +.....++
T Consensus 311 ~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h------- 377 (430)
T 2xyi_A 311 KLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH------- 377 (430)
T ss_dssp TSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-------
T ss_pred CCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-------
Confidence 567888989999999999999996 577877 7999999998752111 00011111
Q ss_pred cccccceecccCCCee-EEEEEcCCCcEEEEEcCc
Q 004298 160 EDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~ 193 (763)
...+..+. +++++. ++++++.||.|++|....
T Consensus 378 ~~~v~~~~--~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 378 TAKISDFS--WNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSCEEEEE--ECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCceEEE--ECCCCCCEEEEEECCCCEEEeEccc
Confidence 12233344 445666 899999999999998554
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.56 E-value=1.2e-13 Score=152.77 Aligned_cols=203 Identities=10% Similarity=-0.013 Sum_probs=145.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..+.+++|+|++.++++++.++.|.+|++. ++.+..+. |...|.+++|+|+|+++++++.||.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 347789999977888888888999999994 55554332 56689999999999999999999999999999999
Q ss_pred EEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+..+..|...+.+++|+|++..+ ++++ .++.+++||...... ....... ..+ ....++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~i~~~d~~~~~~--~~~~~~~--------~~~--~~~~~~~~ 264 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNW------ISEDISVIDRKTKLE--IRKTDKI--------GLP--RGLLLSKD 264 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEET------TTTEEEEEETTTTEE--EEECCCC--------SEE--EEEEECTT
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEec------CCCcEEEEECCCCcE--EEEecCC--------CCc--eEEEEcCC
Confidence 999999899999999999999877 4554 689999999865210 0000000 111 12234566
Q ss_pred eeEEEEEc--------CCCcEEEEEcCceee-eeee---------ecccc-cccccCCCCCceeeec-------------
Q 004298 174 FSILCSGD--------KDGSICFNIFGIFPI-GKIN---------IHKFH-VAIPNADEQGTCRLLN------------- 221 (763)
Q Consensus 174 ~~~L~sgs--------~DG~I~lw~~~~~~i-g~~~---------i~~~~-~~~~s~~~~~~~~l~~------------- 221 (763)
++.+++++ .||.|++|+...... ..+. ..... .-..+++.++.+++|+
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~ 344 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF 344 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC
Confidence 76777777 588999998654221 1111 11000 0112345677788886
Q ss_pred cceeeEEecCCCCEEEEEeec
Q 004298 222 ASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d 242 (763)
..+.+++|+|||+.+++++.+
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECC
T ss_pred CCCCeEEEcCCCCEEEEEecC
Confidence 347889999999999988764
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.56 E-value=3.3e-13 Score=147.18 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=132.9
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.+++|+|+++.++++ +.++.|.+|++ +++.+..+.++..+.+++|+|||+.+ ++++.|+.|++||+.+++.+..+
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 59999999999987655 46799999999 56666777777889999999999987 67778999999999999999888
Q ss_pred cccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
..| ..+.++.|+|+++.+ ++++ .++.+++||...... ...... ..... ...++++++.++
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~--~~~~~~--------~~~~~--~~~~~~~g~~l~ 215 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANF------DSMSISVIDTVTNSV--IDTVKV--------EAAPS--GIAVNPEGTKAY 215 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEE--EEEEEC--------SSEEE--EEEECTTSSEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeC------CCCEEEEEECCCCeE--EEEEec--------CCCcc--ceEECCCCCEEE
Confidence 765 567999999999876 5665 689999999875310 000000 01111 223456677777
Q ss_pred EEc---CCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 179 SGD---KDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 179 sgs---~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+++ .++.|++|+..... +..++.+ ..+.+++|+|||+++++++.
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKITARIPVG-------------------PDPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEECC-------------------SSEEEEEECTTSSEEEEEET
T ss_pred EEecCcCCCcEEEEECCCCeEEEEEecC-------------------CCccEEEEccCCCEEEEEcC
Confidence 776 69999999976432 2222211 13567899999999987754
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.55 E-value=1.1e-13 Score=152.38 Aligned_cols=167 Identities=10% Similarity=0.058 Sum_probs=113.3
Q ss_pred CCCeEEEEEcC--------CCCEEEEEeCCCeEEEEEc-cCceEEE-ecCCCcEEEEEEccCCC-EEEEEEcCCcEEEEE
Q 004298 21 ASQIKIAEWNP--------EKDLLAMATEDSKILLHRF-NWQRLWT-ISPGKSVTSLCWRPDGK-AIAVGLEDGTITLHD 89 (763)
Q Consensus 21 ~~~V~~l~~sP--------~~~lLA~~s~Dg~V~v~~l-~~~~v~~-~~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwd 89 (763)
.+.|.+++|+| ++++||+++.|++|+||++ +++++.. ..+...|.+++|+|++. +|++|+.||+|++||
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd 215 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence 45699999998 7899999999999999999 4555544 45778999999999875 899999999999999
Q ss_pred ccCCeEEEEe-------------------------cccCCceeEEEee-cCCCceeccCCCCCcccCCceeecCCCCC--
Q 004298 90 VENGKLLRSL-------------------------KSHTVAVVCLNWE-EDAQPSKNDFGNIPTYEDRTSRFFPPAPR-- 141 (763)
Q Consensus 90 ve~g~~~~~l-------------------------~~h~~~V~~l~ws-~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-- 141 (763)
+++++..... .+|...|.++.|. +++..+++++ .|+++++||+...
T Consensus 216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s------~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC------KSGAWLRWNLFANND 289 (393)
T ss_dssp TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC------TTSEEEEEEC-----
T ss_pred CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe------CCCCEEEEECccCCC
Confidence 9987654322 2567789999987 7899999998 8999999997642
Q ss_pred CCCCCCcccCCc--ccccC-----CcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 142 IPQMPGLVSGDT--GFTDD-----SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 142 ~~~l~~~~s~~~--~~~~~-----~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...+..+..... .+... .........+....+..++++|+.||+|++|+...
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC
T ss_pred CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC
Confidence 111111110000 00000 00001112222334556788999999999998654
No 124
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.55 E-value=2.6e-13 Score=142.90 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=125.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-----------------------------------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----------------------------------------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~----------------------------------------- 59 (763)
..|.+++|+|+++++|+|+.||+|++|++ +++.+..+.
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 45999999999999999999999999998 444333221
Q ss_pred -CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE----EEEecccCCceeEEEeecCCCce---eccCCCCCcccCC
Q 004298 60 -PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL----LRSLKSHTVAVVCLNWEEDAQPS---KNDFGNIPTYEDR 131 (763)
Q Consensus 60 -~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~----~~~l~~h~~~V~~l~ws~~~~~l---~s~s~~~~~~~d~ 131 (763)
|...+.++.|+++|++|++|+.||.|++||+++++. ......|.+.|.++.|+|++..+ ++++ .++
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~ 221 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT------SDR 221 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT------TTC
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC------CCC
Confidence 234578899999999999999999999999987653 34455678899999999987643 3455 789
Q ss_pred ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc-----
Q 004298 132 TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH----- 205 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~----- 205 (763)
++++|+........ .. .+ ...+....+....+.-++++|+.||+|++|+.... .+..+.-|...
T Consensus 222 ~i~lwd~~~~~~~~--~~-~~-------~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 222 HIRIWNVCSGACLS--AV-DA-------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp EEEEEETTTCCEEE--EE-EC-------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEEecccccccc--cc-cc-------eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 99999976531110 00 00 11122233333334334445668999999987654 33333322211
Q ss_pred -----cccccCCCCCceeeec
Q 004298 206 -----VAIPNADEQGTCRLLN 221 (763)
Q Consensus 206 -----~~~~s~~~~~~~~l~~ 221 (763)
..+.+++.|+++++|+
T Consensus 292 ~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 292 MSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp ECTTSSCEEEEETTTEEEEEC
T ss_pred EcCCCCEEEEEecCCeEEEEE
Confidence 1234677888888887
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.54 E-value=4e-13 Score=149.13 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=128.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC---eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEE-EEEcCCc--EEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS---KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIA-VGLEDGT--ITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg---~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~La-sg~~Dg~--V~lwdve~g~ 94 (763)
..|.+++|||+|+.||+++.++ .|++|++ +++......+...+.+++|+|||+.|+ +++.||. |++||+.+++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 3499999999999999999875 9999999 455443334667899999999999888 5555655 9999999887
Q ss_pred EEEEecccCCceeEEEeecCCCceeccCCCCCcccCC--ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR--TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~--~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
. ..+..|...+.++.|+|+|+.+++++. .++ .+.+||....... ....+. ... ....+++
T Consensus 259 ~-~~l~~~~~~~~~~~~spdg~~l~~~s~-----~~g~~~i~~~d~~~~~~~---~l~~~~-------~~~--~~~~~sp 320 (415)
T 2hqs_A 259 I-RQVTDGRSNNTEPTWFPDSQNLAFTSD-----QAGRPQVYKVNINGGAPQ---RITWEG-------SQN--QDADVSS 320 (415)
T ss_dssp E-EECCCCSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTSSCCE---ECCCSS-------SEE--EEEEECT
T ss_pred E-EeCcCCCCcccceEECCCCCEEEEEEC-----CCCCcEEEEEECCCCCEE---EEecCC-------Ccc--cCeEECC
Confidence 6 567788889999999999998877651 244 4555676542111 000010 111 2234567
Q ss_pred CeeEEEEEcCC---CcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 173 RFSILCSGDKD---GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 173 ~~~~L~sgs~D---G~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.|++++.+ +.|++|+...-....+. .. ..+.+++|||||+.+++++.++
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~----------~~---------~~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLS----------ST---------FLDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEEECC----------CS---------SSCEEEEECTTSSEEEEEEEET
T ss_pred CCCEEEEEECcCCceEEEEEECCCCCEEEec----------CC---------CCcCCeEEcCCCCEEEEEEcCC
Confidence 77788877754 57888876543221110 00 1366899999999999887654
No 126
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.53 E-value=9.3e-14 Score=149.05 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=115.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEE--ccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCW--RPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~w--spDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+.|.+++|+|++++|++++.||.|++|++ +++.+....|...|++++| +|+|++|++|+.||.|++||+++++.+..
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 34999999999999999999999999999 4555555568899999999 89999999999999999999999887777
Q ss_pred ecccC-----------------------------------------CceeEEEeecCCCc----eeccCCCCCcccCCce
Q 004298 99 LKSHT-----------------------------------------VAVVCLNWEEDAQP----SKNDFGNIPTYEDRTS 133 (763)
Q Consensus 99 l~~h~-----------------------------------------~~V~~l~ws~~~~~----l~s~s~~~~~~~d~~i 133 (763)
+..|. ..+.++.+.++... +++++ .|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~dg~i 240 (368)
T 3mmy_A 167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS------IEGRV 240 (368)
T ss_dssp EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE------TTSEE
T ss_pred EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec------CCCcE
Confidence 65442 22334444444333 56665 78889
Q ss_pred eecCCCCCCC-CCCCcccCCcccc-----cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 134 RFFPPAPRIP-QMPGLVSGDTGFT-----DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 134 ~~wd~~~~~~-~l~~~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
++|+...... .......++.... ......+..+ .+++++++|++|+.||.|++|+....
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI--AFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE--EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EEEecCCCCccccceeeeeeecccccccccccccceEEE--EEecCCCEEEEEccCCeEEEEECCCC
Confidence 9998775311 1111111111100 0000023333 45567789999999999999997753
No 127
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.51 E-value=7.1e-14 Score=156.22 Aligned_cols=190 Identities=9% Similarity=0.067 Sum_probs=132.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-----------ceEE------EecCCCcEEEEEEccCCCEEE----EEEc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-----------QRLW------TISPGKSVTSLCWRPDGKAIA----VGLE 81 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-----------~~v~------~~~~~~~V~~l~wspDG~~La----sg~~ 81 (763)
.+..++|+|++.++++++.++ +.||+... ..+. .+.++..|.+++|+|||++|| +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 488999999999999999888 88887521 1122 233456799999999999999 6778
Q ss_pred CCcEEEEEccCC--------e---EEEEecccCCceeEEEeecC-CCceeccCCCCCcccCCceeecCCCCCCCCCCCcc
Q 004298 82 DGTITLHDVENG--------K---LLRSLKSHTVAVVCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV 149 (763)
Q Consensus 82 Dg~V~lwdve~g--------~---~~~~l~~h~~~V~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~ 149 (763)
|+.|+|||++++ + .+..+.+|...|.+++|+|+ +..+++++ .|+++++||.+..... ...
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s------~Dg~v~iwD~~~~~~~--~~~ 188 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL------ADGSIAVLQVTETVKV--CAT 188 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE------TTSCEEEEEESSSEEE--EEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE------CCCeEEEEEcCCCcce--eec
Confidence 999999998765 2 24556779999999999998 67888888 8999999998763110 001
Q ss_pred cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe
Q 004298 150 SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL 229 (763)
Q Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~ 229 (763)
.++ ...+..+ ++++++++|++|+.||+|++|+........+..+. .. .... ...|.+++|
T Consensus 189 ~~~-------~~~v~~v--~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~-----~~-~~~~-----~~~v~~v~w 248 (434)
T 2oit_A 189 LPS-------TVAVTSV--CWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP-----FY-ESDH-----PVRVLDVLW 248 (434)
T ss_dssp ECG-------GGCEEEE--EECTTSSCEEEEETTSCEEEECTTCCEEEEECCCT-----TC-CTTS-----CEEEEEEEE
T ss_pred cCC-------CCceeEE--EEcCCCCEEEEEcCCCcEEEEccCCcccccccCCc-----cc-CCCC-----ceeEEEEEE
Confidence 111 1223333 34567889999999999999987632233332111 00 0000 025789999
Q ss_pred cCCCCEEEEEee
Q 004298 230 SKDLFHLTVLCS 241 (763)
Q Consensus 230 SpDg~~Llv~~~ 241 (763)
++++.++++...
T Consensus 249 ~~~~~~l~~~~~ 260 (434)
T 2oit_A 249 IGTYVFAIVYAA 260 (434)
T ss_dssp EETTEEEEEEEE
T ss_pred ecCceEEEEEcc
Confidence 998877766544
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.49 E-value=1.9e-13 Score=152.72 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCCEEE----EEeCCCeEEEEEcc-C--------ceEEEe---c-CCCcEEEEEEccC-CCEEEEEEc
Q 004298 20 VASQIKIAEWNPEKDLLA----MATEDSKILLHRFN-W--------QRLWTI---S-PGKSVTSLCWRPD-GKAIAVGLE 81 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA----~~s~Dg~V~v~~l~-~--------~~v~~~---~-~~~~V~~l~wspD-G~~Lasg~~ 81 (763)
+++.|.+++|+|++++|| +++.|+.|+||++. + +.+..+ . |+..|.+++|+|+ +++||+|+.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 345699999999999999 67889999999983 2 222222 2 6788999999997 899999999
Q ss_pred CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 82 DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
||+|++||++++..+....+|...|++++|+|+|.++++++ .|+++++||.+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs------~dg~v~iwd~~ 222 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK------QNGTVVQYLPT 222 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE------TTSCEEEECTT
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc------CCCcEEEEccC
Confidence 99999999999987777778889999999999999999998 89999999987
No 129
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.49 E-value=1.6e-12 Score=143.88 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=138.9
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE--------cCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMA-TEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL--------EDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~--------~Dg~V~lwdve 91 (763)
..+.+++|+|+++.++++ +.|+.|.+|++ +++.+..+..+..+.+++|+|||+++++++ .||.|++||+.
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 359999999999988554 47999999999 677777777777899999999999999988 58999999999
Q ss_pred CCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
+++.+..+ .|...+.+++|+|+++.+ ++++ .++.+++||..... ...... . ..... ...+
T Consensus 292 ~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~~~--~~~~~~-~-------~~~~~--~~~~ 352 (433)
T 3bws_A 292 KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKEKK--VQKSIP-V-------FDKPN--TIAL 352 (433)
T ss_dssp TTEEEEEE-EEEECEEEEEECSSTTEEEEEET------TTTEEEEEETTTTE--EEEEEE-C-------SSSEE--EEEE
T ss_pred CCcEEeec-cCCCCcceEEECCCCCEEEEEec------CCCEEEEEECCCCc--EEEEec-C-------CCCCC--eEEE
Confidence 99888776 456689999999999744 5555 79999999987421 000000 0 01111 2334
Q ss_pred CCCeeEEEEEcC---------------CCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCC
Q 004298 171 HQRFSILCSGDK---------------DGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLF 234 (763)
Q Consensus 171 ~~~~~~L~sgs~---------------DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~ 234 (763)
+++++.+++++. ||.|++|+...... ..+.. ...+..++|+|||+
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-------------------GNQPTGLDVSPDNR 413 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-------------------SSSEEEEEECTTSC
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-------------------CCCCceEEEcCCCC
Confidence 566666776665 57999998655322 22210 12467899999999
Q ss_pred EEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 235 HLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 235 ~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
++++++.++ ..++++.++
T Consensus 414 ~l~~~~~~d-----------~~i~v~~~~ 431 (433)
T 3bws_A 414 YLVISDFLD-----------HQIRVYRRD 431 (433)
T ss_dssp EEEEEETTT-----------TEEEEEEET
T ss_pred EEEEEECCC-----------CeEEEEEec
Confidence 998876522 267777654
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.37 E-value=1.1e-11 Score=128.15 Aligned_cols=184 Identities=10% Similarity=0.079 Sum_probs=120.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec---CCCcEEEEEEccCCCEEEEEE--cCCcEEEEEc--cCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS---PGKSVTSLCWRPDGKAIAVGL--EDGTITLHDV--ENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~---~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdv--e~g 93 (763)
..|.+++|+|+++++++++ ++.|.+|++.. .....+. +...+.+++|+|||++|++++ .++.+.||.+ .++
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence 3499999999999999887 78999999955 4444433 236789999999999999999 4455666554 445
Q ss_pred eEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+ ...+..+ ..+.++.|+|+++.++ +++ .++.+++|+......... ....+ ...+..+ .+++
T Consensus 121 ~-~~~~~~~-~~~~~~~~spdg~~l~~~~~------~~~~~~l~~~~~~~~~~~-~~~~~-------~~~~~~~--~~s~ 182 (297)
T 2ojh_A 121 T-PRLMTKN-LPSYWHGWSPDGKSFTYCGI------RDQVFDIYSMDIDSGVET-RLTHG-------EGRNDGP--DYSP 182 (297)
T ss_dssp C-CEECCSS-SSEEEEEECTTSSEEEEEEE------ETTEEEEEEEETTTCCEE-ECCCS-------SSCEEEE--EECT
T ss_pred c-eEEeecC-CCccceEECCCCCEEEEEEC------CCCceEEEEEECCCCcce-EcccC-------CCccccc--eECC
Confidence 4 4445443 4589999999999776 554 678889987542111110 00011 1112223 3456
Q ss_pred CeeEEEEEc-CCCcEEEEEcCce--eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 173 RFSILCSGD-KDGSICFNIFGIF--PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 173 ~~~~L~sgs-~DG~I~lw~~~~~--~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+++.++.++ .++.+++|.++.. ....+. -....+..++|||||+++++++.+
T Consensus 183 dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 183 DGRWIYFNSSRTGQMQIWRVRVDGSSVERIT------------------DSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCEEECC------------------CCSEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCEEEEEecCCCCccEEEECCCCCCcEEEe------------------cCCcccCCeEECCCCCEEEEEEcC
Confidence 666666554 6999999975421 111110 011346789999999999988765
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.36 E-value=1.8e-11 Score=135.81 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=117.3
Q ss_pred CCEEEEEeCC------CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC---cEEEEEccCCeEEEEeccc
Q 004298 33 KDLLAMATED------SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG---TITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 33 ~~lLA~~s~D------g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg---~V~lwdve~g~~~~~l~~h 102 (763)
+..++.++.+ +.|++|+++++.+..+. |...|.+++|+|||+.|++++.++ .|++||+++++.. .+..|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 6667766654 79999999776655554 677899999999999999999875 9999999998875 56678
Q ss_pred CCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 103 TVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
...+.+++|+|+|+.++ +++.+ .+..+.+||....... ....+.. .. ....++++++.|++++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~---~l~~~~~-------~~--~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIR---QVTDGRS-------NN--TEPTWFPDSQNLAFTS 285 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEE---ECCCCSS-------CE--EEEEECTTSSEEEEEE
T ss_pred CCcccCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEE---eCcCCCC-------cc--cceEECCCCCEEEEEE
Confidence 88999999999999777 55410 2345888887653110 0111111 11 2234557777777766
Q ss_pred C-CCcEEEE--EcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 182 K-DGSICFN--IFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 182 ~-DG~I~lw--~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
. +|...+| +...-....+. . ....+.+++|||||++|+++..+
T Consensus 286 ~~~g~~~i~~~d~~~~~~~~l~----------~--------~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQRIT----------W--------EGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CTTSSCEEEEEETTSSCCEECC----------C--------SSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEe----------c--------CCCcccCeEECCCCCEEEEEECc
Confidence 5 6655555 43321111110 0 01246689999999999988764
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.35 E-value=7e-11 Score=125.43 Aligned_cols=190 Identities=8% Similarity=0.014 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEcc-C---ceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC-CeE
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRFN-W---QRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN-GKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~-~---~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~-g~~ 95 (763)
.+..++|+|+++++++++. ++.|.+|+++ + +.+..+.....+.+++|+|||+++++++ .++.|++||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 4788999999998876664 7899999992 2 2344445566789999999999988888 899999999987 655
Q ss_pred EE----Eecc-cCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCC--CcccCC-cccccCCcccccce
Q 004298 96 LR----SLKS-HTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGD-TGFTDDSEDSFREL 166 (763)
Q Consensus 96 ~~----~l~~-h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~-~~~~~~~~~~~~~~ 166 (763)
.. .+.. ....+.++.|+|+++.++ ++. .++.+.+|+.......+. ...... ..+. ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~-- 234 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNIECVQTLDMMPENFS--DTRWAA-- 234 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTSCCEEEEEEECSCTTCC--SCCCEE--
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEecCCCCcEEEEeeccccCcccc--ccCCcc--
Confidence 32 2222 235788999999998654 443 588999998854211110 000000 0000 000111
Q ss_pred ecccCCCeeEEE-EEcCCCcEEEEEcCc----e-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 167 ANSSHQRFSILC-SGDKDGSICFNIFGI----F-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 167 ~~~~~~~~~~L~-sgs~DG~I~lw~~~~----~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
...++++++.|+ ++..++.|.+|+... . .+..+.. ...+..++|+|||+.|+++.
T Consensus 235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-------------------ETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-------------------SSSCCCEEECTTSSEEEEEC
T ss_pred ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-------------------CCccceEEECCCCCEEEEec
Confidence 223456665554 666899999998762 1 1122211 01255789999999999887
Q ss_pred e
Q 004298 241 S 241 (763)
Q Consensus 241 ~ 241 (763)
.
T Consensus 296 ~ 296 (343)
T 1ri6_A 296 Q 296 (343)
T ss_dssp T
T ss_pred C
Confidence 4
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.35 E-value=9.1e-12 Score=128.74 Aligned_cols=192 Identities=9% Similarity=-0.029 Sum_probs=125.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CC--eEEEEEccCceEEEecCCCcEEEEEEccCCCEEE-EEEcCCcEEEEEcc-CCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATE--DS--KILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIA-VGLEDGTITLHDVE-NGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~--Dg--~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~La-sg~~Dg~V~lwdve-~g~~ 95 (763)
..|.+++|+|+++++++++. ++ .|++++..++....+.....+.+++|+|||+.|+ ++..|+.++||++. .+..
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 45788999999999999983 34 4555555555666666666699999999999887 67789999999964 2334
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...+..|...+.++.|+|+++.++.++. .++.+++|+......... ....+ ...+ ....++++++
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~i~~~~~~~~~~~-~~~~~-------~~~~--~~~~~s~dg~ 229 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSS-----RTGQMQIWRVRVDGSSVE-RITDS-------AYGD--WFPHPSPSGD 229 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTSSCEE-ECCCC-------SEEE--EEEEECTTSS
T ss_pred ceEcccCCCccccceECCCCCEEEEEec-----CCCCccEEEECCCCCCcE-EEecC-------Cccc--CCeEECCCCC
Confidence 4566677889999999999997765431 477888887642111110 00111 1111 1233557777
Q ss_pred EEEEEcCC-----------CcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKD-----------GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~D-----------G~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.|++++.+ +.|++|+........+. . ..-....+..++|||||+++++++.+.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~--~-------------~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF--D-------------LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE--E-------------EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeee--c-------------cCCCCcccccceECCCCCEEEEEEecc
Confidence 78777765 45777775432211110 0 000113467889999999999887654
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.33 E-value=9e-11 Score=125.43 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCEEEEEe--CCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMAT--EDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s--~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..++|+|+++.+++++ .++.|.+|+. +++.++.+. ++..+.+++|+|||+++++++.++.|.+||..+++.+..+
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK 222 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence 68899999999877766 4788999999 666777777 6677899999999999999999999999999999998887
Q ss_pred cc----cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 100 KS----HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 100 ~~----h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.. +...+..++|+|+++.+..++ ..++.+.+||..... ........ .. ....++++++
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~--~~~~~~~~--------~~---~~~~~s~dg~ 284 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITD-----SKAAEVLVVDTRNGN--ILAKVAAP--------ES---LAVLFNPARN 284 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEE-----SSSSEEEEEETTTCC--EEEEEECS--------SC---CCEEEETTTT
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEe-----CCCCEEEEEECCCCc--EEEEEEcC--------CC---ceEEECCCCC
Confidence 64 455688899999998665543 156899999876421 10000000 00 1122345555
Q ss_pred -EEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 -ILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 -~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++++..++.|.+|+...... ..++.. ..+..++|+|||+++++...++
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-------------------THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECC-------------------SEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEECCCCeEEEEECCCCeEEEEEecC-------------------CCCCeEEEcCCCCEEEEEEccc
Confidence 556666799999998764432 222211 1356899999999999988764
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.29 E-value=9.9e-11 Score=124.28 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=122.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CeEEEEEcc--Cc---eEEEecCCCcEEEEEEccCCCEEEEEEc-CCcEEEEEcc---C
Q 004298 23 QIKIAEWNPEKDLLAMATED-SKILLHRFN--WQ---RLWTISPGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVE---N 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D-g~V~v~~l~--~~---~v~~~~~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve---~ 92 (763)
.+..++|+|+++++++++.+ +.|.+|+++ .. .+..+..+..+.+++|+|||+++++++. ++.|.+||+. +
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 47889999999988888876 899999995 32 2334444457899999999998877764 8899999994 4
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
++.+..+.. ...+.+++|+|+++.+++++ ..++.+.+|+..... .+...... ............ ..+++
T Consensus 119 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~~~~~--~~~~p 187 (343)
T 1ri6_A 119 VGVVDVVEG-LDGCHSANISPDNRTLWVPA-----LKQDRICLFTVSDDG-HLVAQDPA--EVTTVEGAGPRH--MVFHP 187 (343)
T ss_dssp EEEEEEECC-CTTBCCCEECTTSSEEEEEE-----GGGTEEEEEEECTTS-CEEEEEEE--EEECSTTCCEEE--EEECT
T ss_pred ccccccccC-CCCceEEEECCCCCEEEEec-----CCCCEEEEEEecCCC-ceeeeccc--ccccCCCCCcce--EEECC
Confidence 445555544 35689999999998766543 257899999976411 00000000 000000011112 23456
Q ss_pred CeeEE-EEEcCCCcEEEEEcCce--e---eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 173 RFSIL-CSGDKDGSICFNIFGIF--P---IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 173 ~~~~L-~sgs~DG~I~lw~~~~~--~---ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+++.+ +++..++.|.+|+++.. . ...+. ..+ . +..+ ...+..++|+|||++++++..
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~--~~~----~-~~~~-----~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD--MMP----E-NFSD-----TRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE--CSC----T-TCCS-----CCCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc--ccC----c-cccc-----cCCccceEECCCCCEEEEEec
Confidence 66644 55568999999987431 1 11111 000 0 0000 013557999999999987764
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.29 E-value=2.3e-10 Score=131.41 Aligned_cols=201 Identities=10% Similarity=0.045 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc---cCceEEEecCCCcEEEEEEcc----CCCEEEEEE-cCCcEEEEEccCCeE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF---NWQRLWTISPGKSVTSLCWRP----DGKAIAVGL-EDGTITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~~~~v~~~~~~~~V~~l~wsp----DG~~Lasg~-~Dg~V~lwdve~g~~ 95 (763)
+..++|+|+++++++++.|+.|.+|++ +++.+..+..+..+.+++|+| ||+++++++ .+++|.+||..++++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 889999999999999999999999999 566777788888899999999 999999998 589999999999999
Q ss_pred EEEeccc----------C-CceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccc
Q 004298 96 LRSLKSH----------T-VAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 96 ~~~l~~h----------~-~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~ 163 (763)
+..+..+ . ..+.++.++|++.. +++.. .++++.+||...... +....-....+ .
T Consensus 261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~-l~~~~i~~~~~-------~ 326 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDN-LTVTSIGAAPF-------L 326 (543)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSS-CEEEEEECCSS-------C
T ss_pred ceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCc-ceeEEeccCcC-------c
Confidence 9888652 2 37899999998765 44554 789999999865211 10000000011 1
Q ss_pred cceecccCCCeeEE-EEEcCCCcEEEEEcCcee-eeeeeeccccc-------------c-cccCC-CCCceeeec-----
Q 004298 164 RELANSSHQRFSIL-CSGDKDGSICFNIFGIFP-IGKINIHKFHV-------------A-IPNAD-EQGTCRLLN----- 221 (763)
Q Consensus 164 ~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~-------------~-~~s~~-~~~~~~l~~----- 221 (763)
. ...++++++++ +++..+++|.+|+..... ...+++...+. . ..++. .++++++|+
T Consensus 327 ~--~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~ 404 (543)
T 1nir_A 327 H--DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 404 (543)
T ss_dssp C--CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred c--CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC
Confidence 1 12345666654 455678999999876532 23333321110 0 11221 356777774
Q ss_pred ----------------cceeeEEecCCCCEEEEEe
Q 004298 222 ----------------ASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 222 ----------------~~I~~v~~SpDg~~Llv~~ 240 (763)
+.+..+++||||++|++..
T Consensus 405 ~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 405 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 1245689999999999875
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.29 E-value=2e-11 Score=145.10 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CC-----eEEEEEcc-CceEEEec-CC------------------------CcEEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATE-DS-----KILLHRFN-WQRLWTIS-PG------------------------KSVTSLCW 69 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~-Dg-----~V~v~~l~-~~~v~~~~-~~------------------------~~V~~l~w 69 (763)
..|..++|||+|+.||+++. |+ .|++|++. ++....+. ++ ..|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45899999999999999998 88 89999994 44333332 11 23789999
Q ss_pred ccCCCEEEEEEcCCcEEEEEccCCe--EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 70 RPDGKAIAVGLEDGTITLHDVENGK--LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 70 spDG~~Lasg~~Dg~V~lwdve~g~--~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+|||++|++++. +.|++||+.+++ ....+..|...+.++.|+|||+.++.++ ++.+.+||...
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-------~~~i~~~d~~~ 181 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-------GRNLWVIDLAS 181 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-------TTEEEEEETTT
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-------CCcEEEEecCC
Confidence 999999999987 999999999873 3456677788999999999999998885 56899998765
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.27 E-value=8.5e-11 Score=135.03 Aligned_cols=199 Identities=10% Similarity=0.039 Sum_probs=138.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc--cCCeEEEEecccCC
Q 004298 28 EWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV--ENGKLLRSLKSHTV 104 (763)
Q Consensus 28 ~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv--e~g~~~~~l~~h~~ 104 (763)
+++|++.++++++.|++|.+|+. +++.+..+..+..+.+++|+|||++|++++.|++|++||+ .+++.+.++.. ..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~ 222 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GI 222 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CC
Confidence 48999999999999999999999 6777777775666999999999999999999999999999 89999998874 56
Q ss_pred ceeEEEeec----CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC----CcccccceecccCCCeeE
Q 004298 105 AVVCLNWEE----DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD----SEDSFRELANSSHQRFSI 176 (763)
Q Consensus 105 ~V~~l~ws~----~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~----~~~~~~~~~~~~~~~~~~ 176 (763)
.+.+++|+| +|+++++++ +.++++.+||..+.. .............. .+.....+.+.. +...+
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~-----~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-~~~~~ 294 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGA-----YWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEF 294 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEE-----EESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEE
T ss_pred CcceEEeCCCcCCCCCEEEEEE-----ccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECC-CCCEE
Confidence 789999999 999988876 358999999875421 00000000000000 000111222222 23467
Q ss_pred EEEEcCCCcEEEEEcCceeee---eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCC
Q 004298 177 LCSGDKDGSICFNIFGIFPIG---KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHG 253 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig---~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~ 253 (763)
+++...+|+|.+|++...... .+.. + ..+..++|+|||+++++++.++
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---------~----------~~~~~~~~spdg~~l~va~~~~---------- 345 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---------A----------PFLHDGGWDSSHRYFMTAANNS---------- 345 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---------C----------SSCCCEEECTTSCEEEEEEGGG----------
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---------C----------cCccCceECCCCCEEEEEecCC----------
Confidence 888889999999987653211 1110 0 1245789999999998886532
Q ss_pred CCcEEEEEeecc
Q 004298 254 MHGLHCLVLDTS 265 (763)
Q Consensus 254 ~~~l~~~~ld~~ 265 (763)
..+.++...+.
T Consensus 346 -~~v~v~D~~tg 356 (543)
T 1nir_A 346 -NKVAVIDSKDR 356 (543)
T ss_dssp -TEEEEEETTTT
T ss_pred -CeEEEEECCCC
Confidence 25666655443
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.27 E-value=2.1e-10 Score=122.49 Aligned_cols=186 Identities=13% Similarity=-0.021 Sum_probs=125.3
Q ss_pred CeEEEEEcCCCCEEEE-EeCCCeEEEEEc-cCceEEEecCCC----------cEEEEEEccCCCEEEEEE--cCCcEEEE
Q 004298 23 QIKIAEWNPEKDLLAM-ATEDSKILLHRF-NWQRLWTISPGK----------SVTSLCWRPDGKAIAVGL--EDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~~----------~V~~l~wspDG~~Lasg~--~Dg~V~lw 88 (763)
.+..++|+|+++.+++ ...++.|.+|+. +++.++.+..+. .+.+++|+|||+.+++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 3677999999995554 455799999999 666667765321 278999999999888776 48899999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~ 168 (763)
|.++++.+..+..+...+.++.|+|+++.++.++ .++.+.+||....... .....+... .......+
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------~~~~i~~~d~~~~~~~-~~~~~~~~~----~~~~~~~~-- 236 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN------ADGELITIDTADNKIL-SRKKLLDDG----KEHFFINI-- 236 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC------TTSEEEEEETTTTEEE-EEEECCCSS----SCCCEEEE--
T ss_pred cCCCCceEEEecCCCCccceEEECCCCCEEEEEc------CCCeEEEEECCCCeEE-EEEEcCCCC----CCcccceE--
Confidence 9999999998876666789999999999888776 6889999987652100 000000000 00111112
Q ss_pred ccCCCeeE-EEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 169 SSHQRFSI-LCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 169 ~~~~~~~~-L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.++++++. ++++..++.|.+|+...... ..+... ....++|+|||++++++..
T Consensus 237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------------~~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 237 SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--------------------ESLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--------------------SCCCEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--------------------CCceEEECCCCCEEEEEEC
Confidence 33455554 44445569999998654322 222210 1135889999999888764
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.25 E-value=3.8e-10 Score=120.91 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=120.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEEcc--Cc--eEEEecCC----------CcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNPEKDLLAMAT-EDSKILLHRFN--WQ--RLWTISPG----------KSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~--~~--~v~~~~~~----------~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
..+..++|+|+++++++++ .++.|.+|+++ +. .+..+... ..+.+++|+|||++++++..++.|+
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 3477899999999888887 67999999984 22 23333221 2488999999999666666789999
Q ss_pred EEEcc-CCeEEE--Eeccc-CCceeEEEeecCCCceec-cCCCCCcccCCceeecCCCCCCCCCC--CcccCCc-ccccC
Q 004298 87 LHDVE-NGKLLR--SLKSH-TVAVVCLNWEEDAQPSKN-DFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDT-GFTDD 158 (763)
Q Consensus 87 lwdve-~g~~~~--~l~~h-~~~V~~l~ws~~~~~l~s-~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~-~~~~~ 158 (763)
+|++. +|+... .+..+ ...+..++|+|+|++++. +. .++.+.+|+.......+. ....... .+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-- 237 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE------LSSQIASLKYDTQTGAFTQLGIVKTIPADYT-- 237 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET------TTTEEEEEEEETTTTEEEEEEEEESSCTTCC--
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC------CCCEEEEEEecCCCCceEEeeeeeecCCCCC--
Confidence 99998 565432 22222 236788999999996554 33 578889997653111100 0000000 000
Q ss_pred CcccccceecccCCCeeEE-EEEcCCCcEEEEEcCce----eeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 159 SEDSFRELANSSHQRFSIL-CSGDKDGSICFNIFGIF----PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~----~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
..... ....++++++.| +++..++.|.+|+...- .+..++. . ...+..++|||||
T Consensus 238 ~~~~~--~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---------~---------~~~~~~~~~spdg 297 (347)
T 3hfq_A 238 AHNGA--AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST---------E---------GDFPRDFDLDPTE 297 (347)
T ss_dssp SCCEE--EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC---------S---------SSCCCEEEECTTS
T ss_pred CCCcc--eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec---------C---------CCCcCeEEECCCC
Confidence 00111 123355777755 66667899999986521 1111110 0 0125679999999
Q ss_pred CEEEEEeec
Q 004298 234 FHLTVLCSG 242 (763)
Q Consensus 234 ~~Llv~~~d 242 (763)
++|+++..+
T Consensus 298 ~~l~v~~~~ 306 (347)
T 3hfq_A 298 AFVVVVNQN 306 (347)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEEcC
Confidence 999988764
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.25 E-value=2.2e-10 Score=122.88 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEEccCce---EEEe-cCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEcc-CCe-
Q 004298 24 IKIAEWNPEKDLLAMATE--DSKILLHRFNWQR---LWTI-SPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVE-NGK- 94 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~--Dg~V~v~~l~~~~---v~~~-~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve-~g~- 94 (763)
+..++|+|++++++++.. ++.|.+|++.... +..+ .++..+..++|+|||++|++++ .++.|.+|++. +|.
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 567999999995444432 6899999994433 3332 2567788999999999998888 78999999996 333
Q ss_pred -EEEEecc---------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 95 -LLRSLKS---------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 95 -~~~~l~~---------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
.+..+.. +...+.+++|+|+++.+++.. .++.+.+|+.... ..+... ..+.........
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~------~~~~v~~~~~~~~-g~~~~~----~~~~~~~g~~p~ 190 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL------GSDKVYVYNVSDA-GQLSEQ----SVLTMEAGFGPR 190 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET------TTTEEEEEEECTT-SCEEEE----EEEECCTTCCEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC------CCCEEEEEEECCC-CcEEEe----eeEEcCCCCCCc
Confidence 3333322 112488999999999655554 6788999987631 111000 000000000111
Q ss_pred ceecccCCCee-EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 165 ELANSSHQRFS-ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 165 ~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
...++++++ +++++..++.|.+|+++.. .+.+.......... .+..+ ...+..++|||||++|+++...
T Consensus 191 --~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~-~~~~~-----~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 191 --HLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIP-ADYTA-----HNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp --EEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSC-TTCCS-----CCEEEEEEECTTSCEEEEEEET
T ss_pred --eEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecC-CCCCC-----CCcceeEEECCCCCEEEEEeCC
Confidence 223556776 4555678899999986531 01110000000000 00000 0236689999999999887653
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.25 E-value=2.4e-10 Score=121.29 Aligned_cols=185 Identities=9% Similarity=-0.033 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCEEEEEeC-CCeEEEEEc-cCce-EEEecCCCcEEE-EEEccCCCEEEEEEcCC---cEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAMATE-DSKILLHRF-NWQR-LWTISPGKSVTS-LCWRPDGKAIAVGLEDG---TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~-Dg~V~v~~l-~~~~-v~~~~~~~~V~~-l~wspDG~~Lasg~~Dg---~V~lwdve~g~~~ 96 (763)
+ .++|+|+++.+++++. ++.|.+|++ +++. ...+..+..... ++|+|||++++++..++ .|.+||+++++.+
T Consensus 43 ~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 43 V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 5 8999999996666555 889999999 4544 555554444555 99999999999666553 8999999999998
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCc-eeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT-SRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~-i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
..+.. .....+++|+|+|+.++.++ ..++. +.+|+...... +... . ..... ..... ....++++++
T Consensus 122 ~~~~~-~~~~~~~~~spdg~~l~~~~-----~~~~~~i~~~~~~~~g~-~~~~-~-~~~~~--~~~~~--~~~~~spdg~ 188 (331)
T 3u4y_A 122 STIPI-PYDAVGIAISPNGNGLILID-----RSSANTVRRFKIDADGV-LFDT-G-QEFIS--GGTRP--FNITFTPDGN 188 (331)
T ss_dssp EEEEC-CTTEEEEEECTTSSCEEEEE-----ETTTTEEEEEEECTTCC-EEEE-E-EEEEC--SSSSE--EEEEECTTSS
T ss_pred EEEEC-CCCccceEECCCCCEEEEEe-----cCCCceEEEEEECCCCc-Eeec-C-Ccccc--CCCCc--cceEECCCCC
Confidence 88765 45579999999998655443 14567 99998764211 0000 0 00000 00111 2233456666
Q ss_pred -EEEEEcCCCcEEEEEcCcee----eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 176 -ILCSGDKDGSICFNIFGIFP----IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 176 -~L~sgs~DG~I~lw~~~~~~----ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+++++..++.|++|+..... +..++. ...+..++|||||++++++..
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPENITLLNAVGT-------------------NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEEC-------------------SSCCCCEEECTTSSEEEEECS
T ss_pred EEEEEeCCCCeEEEEECCCCcccceeeeccC-------------------CCCCceEEECCCCCEEEEEEc
Confidence 55666679999999865432 222211 023557899999999988764
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.22 E-value=4.1e-10 Score=119.12 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCC------cEEEEEEccCCCEEEEEE------------cCC
Q 004298 24 IKIAEWNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGK------SVTSLCWRPDGKAIAVGL------------EDG 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~------~V~~l~wspDG~~Lasg~------------~Dg 83 (763)
+..++|+|+++.++ ++..++.|.+|++ +++.+..+..+. .+.+++|+|||++++++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 67899999997664 5556789999999 667676665433 677899999999999886 579
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.|.+||+.+++.+..+.. ...+.++.|+|+++.++.++ +.+.+||..
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~ 162 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG--------RDLHVMDPE 162 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES--------SSEEEEETT
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC--------CeEEEEECC
Confidence 999999999998888765 45788999999999777663 456666654
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.22 E-value=7.9e-11 Score=140.02 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|..++|||||++|++++. +.|++|++.+. .+..+. ++..+.+++|+|||++||+++ ++.|++||+.+++.....
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 788999999999999886 99999999655 444443 557899999999999999987 468999999988876655
Q ss_pred cccCCc----------------eeEEEeecCCCceeccC
Q 004298 100 KSHTVA----------------VVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 100 ~~h~~~----------------V~~l~ws~~~~~l~s~s 122 (763)
..+... +.++.|+|||+.+++++
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 444332 47899999999888775
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.21 E-value=9.9e-11 Score=138.43 Aligned_cols=195 Identities=12% Similarity=0.150 Sum_probs=124.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-----ceEEEe-cCC-Cc--------------EEEEEEccCCCEEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW-----QRLWTI-SPG-KS--------------VTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-----~~v~~~-~~~-~~--------------V~~l~wspDG~~Lasg~ 80 (763)
..+..++|||+|+.||++ .++.|++|++.+ .....+ ..+ .. +.+++|+|||++|++++
T Consensus 121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence 347789999999999985 679999999954 433333 222 22 48999999999999998
Q ss_pred ---------------------------------cCCcEEEEEccCCeEEEEec--ccCCceeEEEeecCCCceeccCCCC
Q 004298 81 ---------------------------------EDGTITLHDVENGKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNI 125 (763)
Q Consensus 81 ---------------------------------~Dg~V~lwdve~g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~ 125 (763)
.++.|++||+.+++...... .|...+.++.|+|||+.+++++.+.
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 45679999999988765442 4667899999999999887765100
Q ss_pred CcccCCceeecCCCCC-CC-CCCCcccCCcccccCCcccccceecccCC--CeeEEEEEcCCCcEEEEEcCceeeeeeee
Q 004298 126 PTYEDRTSRFFPPAPR-IP-QMPGLVSGDTGFTDDSEDSFRELANSSHQ--RFSILCSGDKDGSICFNIFGIFPIGKINI 201 (763)
Q Consensus 126 ~~~~d~~i~~wd~~~~-~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~L~sgs~DG~I~lw~~~~~~ig~~~i 201 (763)
......+.+||.... .. .+.. ....... .....+ .+++ +++++++++.||.+++|.++.- -+...
T Consensus 280 -~~~~~~v~~~d~~~g~~~~~~~~--~~~~~~~----~~~~~~--~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~- 348 (706)
T 2z3z_A 280 -AQNECKVNAYDAETGRFVRTLFV--ETDKHYV----EPLHPL--TFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIR- 348 (706)
T ss_dssp -TSCEEEEEEEETTTCCEEEEEEE--EECSSCC----CCCSCC--EECTTCSSEEEEEECTTSSCEEEEEETT-SCEEE-
T ss_pred -CCCeeEEEEEECCCCceeeEEEE--ccCCCeE----CccCCc--eeecCCCCEEEEEEccCCccEEEEEECC-CCEEE-
Confidence 001237888987652 10 0000 0000000 001112 3445 7789999999999999986521 01110
Q ss_pred cccccccccCCCCCceeeeccceee-EEecCCCCEEEEEeec
Q 004298 202 HKFHVAIPNADEQGTCRLLNASIYK-VALSKDLFHLTVLCSG 242 (763)
Q Consensus 202 ~~~~~~~~s~~~~~~~~l~~~~I~~-v~~SpDg~~Llv~~~d 242 (763)
..+.+ ...+.. ++|||||+.+++.+.+
T Consensus 349 ------~l~~~--------~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 349 ------QVTKG--------EWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp ------ECCCS--------SSCEEEEEEECTTSSEEEEEESS
T ss_pred ------ecCCC--------CeEEEeeeEEcCCCCEEEEEecC
Confidence 00111 112444 7899999999888765
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.21 E-value=9.6e-10 Score=116.60 Aligned_cols=207 Identities=8% Similarity=0.026 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCEEEEEeCCC---eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE-EcCCc-EEEEEccCCeEE-
Q 004298 24 IKIAEWNPEKDLLAMATEDS---KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG-LEDGT-ITLHDVENGKLL- 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg---~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg-~~Dg~-V~lwdve~g~~~- 96 (763)
+.+++|+|++++++++..++ .|.+|++ +++.+..+..+..+.+++|+|||++++++ ..++. |.+|++.....+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 33499999999998555443 8999999 56666667777788999999999866555 56688 999998753322
Q ss_pred ---EEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccC
Q 004298 97 ---RSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 97 ---~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.....+...+.++.|+|+++.+ +++. .++.+.+||...... ......... ... ....++
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~d~~~~~~~~~~~~~~~~--------~~~--~~~~~s 229 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANL------IGNSIGILETQNPENITLLNAVGTN--------NLP--GTIVVS 229 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEET------TTTEEEEEECSSTTSCEEEEEEECS--------SCC--CCEEEC
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeC------CCCeEEEEECCCCcccceeeeccCC--------CCC--ceEEEC
Confidence 1111334568999999999855 4443 588999999764211 000000100 111 122345
Q ss_pred CCeeEEE-EEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccC
Q 004298 172 QRFSILC-SGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELG 250 (763)
Q Consensus 172 ~~~~~L~-sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~ 250 (763)
++++.++ +...++.|.+|+........+.... .... .++. +......++|||||++|++++.++
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~---~~~~---~~~~~~~~~~spdg~~l~v~~~~~------- 294 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG--HGLL---IDPR---PLFGANQMALNKTETKLFISANIS------- 294 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE--CCCC---CCCG---GGTTCCCEEECTTSSEEEEEETTT-------
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCceeeecccc--cccc---cCCC---CcccccceEECCCCCEEEEecCCC-------
Confidence 6777554 4456788999986653332111000 0000 0000 001124589999999998887643
Q ss_pred CCCCCcEEEEEeecc
Q 004298 251 GHGMHGLHCLVLDTS 265 (763)
Q Consensus 251 ~~~~~~l~~~~ld~~ 265 (763)
+.+.++.++..
T Consensus 295 ----~~v~v~d~~~~ 305 (331)
T 3u4y_A 295 ----RELKVFTISGK 305 (331)
T ss_dssp ----TEEEEEETTSC
T ss_pred ----CcEEEEEecCC
Confidence 25666665543
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.20 E-value=3.8e-11 Score=142.30 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC----cEEEEEEccCCCEEEEEEcC---------CcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK----SVTSLCWRPDGKAIAVGLED---------GTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~----~V~~l~wspDG~~Lasg~~D---------g~V~l 87 (763)
..+..++|+|+|+++++ +.||+|++|++ +++....+.+.. .|.+++|||||++|++++.+ +.+++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678999999998876 78999999999 555544444322 48999999999999999875 77889
Q ss_pred EEccCCeEEEEec---ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
||+++++. ..+. .|...+.+++|+|||+.++.++ ++.+.+|+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~ 143 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-------ENNIYYCAHVG 143 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-------TTEEEEESSSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEE-------CCeEEEEECCC
Confidence 99998876 3443 3444589999999999999886 47899999865
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.17 E-value=4.1e-10 Score=133.36 Aligned_cols=99 Identities=12% Similarity=0.203 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATED---------SKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---------g~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.|..++|||||++||+++.+ +.|++|++.+.....+. +...+.+++|||||+.||+++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 48999999999999999875 78889999655544443 2234889999999999999986 7999999
Q ss_pred ccCCeEEEEecccCCce------------------eEEEeecCCCceeccC
Q 004298 90 VENGKLLRSLKSHTVAV------------------VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V------------------~~l~ws~~~~~l~s~s 122 (763)
+.+++.......+...+ .++.|+|||+.+++++
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 99988776655443333 7899999999888765
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.15 E-value=2e-09 Score=133.42 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=85.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe-cCCCcEEEEEEccCCCEEEEEEcCC----------cEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDG----------TITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg----------~V~lwd 89 (763)
..+..++|||+|+.||+++.++.|++|++. ++..... .+...+.+++|+|||++|++++.++ .|++||
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 458999999999999999999999999994 4444344 4667789999999999999988654 899999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+++ +..+..|...+.++.|+|+|+.+++++
T Consensus 459 ~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 459 MEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp TTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred CCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 99888 677888888899999999999888776
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.14 E-value=6.8e-10 Score=131.23 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEEccCceEEEec----CCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMAT---------------------------------EDSKILLHRFNWQRLWTIS----PGKSVTS 66 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s---------------------------------~Dg~V~v~~l~~~~v~~~~----~~~~V~~ 66 (763)
+.+++|||+|+.||+++ .+..|++|++.+.....+. +...+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 57899999999999987 4467999999655544433 4467999
Q ss_pred EEEccCCCEEEEEEcCC-----cEEEEEccCCeEEEEec-c-cCC---ceeEEEeec--CCCceeccCCCCCcccCCcee
Q 004298 67 LCWRPDGKAIAVGLEDG-----TITLHDVENGKLLRSLK-S-HTV---AVVCLNWEE--DAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 67 l~wspDG~~Lasg~~Dg-----~V~lwdve~g~~~~~l~-~-h~~---~V~~l~ws~--~~~~l~s~s~~~~~~~d~~i~ 134 (763)
++|+|||+.|++++.|+ .|++||+.+|+....+. . +.. .+.++.|+| +|+++++++ .++.++
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~------~~g~~~ 336 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR------RDGWNH 336 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC------TTSSCE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc------cCCccE
Confidence 99999999999988776 89999999984443332 2 222 347789999 999888876 678888
Q ss_pred ecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE-EEEcCCC--cEEEEEcCceeeeeeeecccccccccC
Q 004298 135 FFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL-CSGDKDG--SICFNIFGIFPIGKINIHKFHVAIPNA 211 (763)
Q Consensus 135 ~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L-~sgs~DG--~I~lw~~~~~~ig~~~i~~~~~~~~s~ 211 (763)
+|.......... ....+. ..+.. ...++++++.| ++++.++ .+++|.++.-. +... . .+
T Consensus 337 l~~~~~~~~~~~-~l~~~~-------~~v~~-~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~~~--~-----l~- 398 (706)
T 2z3z_A 337 LYLYDTTGRLIR-QVTKGE-------WEVTN-FAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GKTK--D-----LT- 398 (706)
T ss_dssp EEEEETTSCEEE-ECCCSS-------SCEEE-EEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CCCE--E-----SC-
T ss_pred EEEEECCCCEEE-ecCCCC-------eEEEe-eeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CCce--e-----cc-
Confidence 886542111000 000110 11111 02344555544 4555555 35555432210 1110 0 00
Q ss_pred CCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 212 DEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 212 ~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
....+.+++|||||+++++.+.+. .....++++.++..
T Consensus 399 --------~~~~~~~~~~spdg~~l~~~~~~~--------~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 399 --------PESGMHRTQLSPDGSAIIDIFQSP--------TVPRKVTVTNIGKG 436 (706)
T ss_dssp --------CSSSEEEEEECTTSSEEEEEEECS--------SCSCEEEEEESSSC
T ss_pred --------CCCceEEEEECCCCCEEEEEecCC--------CCCcEEEEEECCCC
Confidence 012367899999999998887643 12235777766554
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.13 E-value=4.6e-10 Score=129.68 Aligned_cols=178 Identities=11% Similarity=-0.027 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEKDLL-AMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~~lL-A~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~~~~~ 98 (763)
+...+|+|+++.+ ++++.++.+.+|++.+.+...+..... .+++|+|||++||+++.+ +.|++||+.+|+.. .
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~ 189 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-V 189 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-E
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-E
Confidence 5577999998643 333444555699996555444432222 789999999999988877 78999999988765 6
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCC--ceeecCCCCCCCCCCCcccCCcccccCCccccccee------ccc
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR--TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA------NSS 170 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~--~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~------~~~ 170 (763)
+..|...+..++|+|||+.++++. .++ .+.+||....... ...++... +..+. ..+
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~------~~~~~~i~~~d~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLE------TAREARLVTVDPRDGSVE---DLELPSKD-------FSSYRPTAITWLGY 253 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEE------CSSCEEEEEECTTTCCEE---ECCCSCSH-------HHHHCCSEEEEEEE
T ss_pred eecCCCccccceECCCCCEEEEcc------CCCeeEEEEEcCCCCcEE---EccCCCcC-------hhhhhhccccceeE
Confidence 778888999999999999998655 566 7889998753221 11111111 11111 114
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
++++.++++++.+|++++|.. |+... .. .+.+.+++|| ||+.++..+.+
T Consensus 254 spdg~~~~~~~~~g~~~l~~~-----g~~~~------~~-----------~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 254 LPDGRLAVVARREGRSAVFID-----GERVE------AP-----------QGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp CTTSCEEEEEEETTEEEEEET-----TEEEC------CC-----------SSEEEEEEEE-TTEEEEEEEET
T ss_pred cCCCcEEEEEEcCCcEEEEEE-----CCeec------cC-----------CCceEEEEec-CCEEEEEEcCC
Confidence 566689999999999999986 33210 00 1246788999 88877666554
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.08 E-value=6e-10 Score=138.08 Aligned_cols=183 Identities=11% Similarity=0.075 Sum_probs=132.4
Q ss_pred CeEEEEEc-CCCCEEEEEeCCCeEEEEEccCceEEEec-CCC-cEEEEEEccCCCEEEEEEcCCcEE-EEEccCCeEEEE
Q 004298 23 QIKIAEWN-PEKDLLAMATEDSKILLHRFNWQRLWTIS-PGK-SVTSLCWRPDGKAIAVGLEDGTIT-LHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~s-P~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~-~V~~l~wspDG~~Lasg~~Dg~V~-lwdve~g~~~~~ 98 (763)
.|..++|| |+|+.+|+++ ++.|.+|+..+.....+. +.. .+.+++|+ ||+.|++++.++.+. +|++.+++.. .
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~ 373 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-K 373 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-E
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-E
Confidence 48899999 9999999888 889999999655555554 455 79999999 999999999988898 9999877654 4
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+..|...+.+++|+|+|+.+++++ .++.+++||...... .....++... +. ...++++++.|+
T Consensus 374 l~~~~~~~~~~~~SpDG~~la~~~------~~~~v~~~d~~tg~~--~~~~~~~~~~-------v~--~~~~SpDG~~la 436 (1045)
T 1k32_A 374 FEENLGNVFAMGVDRNGKFAVVAN------DRFEIMTVDLETGKP--TVIERSREAM-------IT--DFTISDNSRFIA 436 (1045)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCE--EEEEECSSSC-------CC--CEEECTTSCEEE
T ss_pred ecCCccceeeeEECCCCCEEEEEC------CCCeEEEEECCCCce--EEeccCCCCC-------cc--ceEECCCCCeEE
Confidence 447788999999999999999887 788999999865311 1111112111 11 223567888888
Q ss_pred EEcCCC----------cEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 179 SGDKDG----------SICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 179 sgs~DG----------~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.++ .|++|+........+. .. ...+..++|||||++|++.+.++
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~----------~~--------~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT----------TE--------NSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEEEECS----------CS--------SSBEEEEEECTTSCEEEEEESCC
T ss_pred EEecCccccccCCCCCeEEEEECCCCcEEEee----------CC--------CcccCCceEcCCCCEEEEEeccc
Confidence 877644 8999986543321110 00 12356789999999999887644
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.08 E-value=1.1e-09 Score=116.45 Aligned_cols=115 Identities=9% Similarity=-0.007 Sum_probs=87.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC--cEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEecc
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK--SVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+++++++.++++++.+++|.+|++ +++.+..+..+. .+..++|+|||+.++++ ..++.|.+||+++++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 3568889999999999999999999 566666666544 68899999999976554 4789999999999998887764
Q ss_pred cC------CceeEEEeecCCCceeccCCC------CCcccCCceeecCCCC
Q 004298 102 HT------VAVVCLNWEEDAQPSKNDFGN------IPTYEDRTSRFFPPAP 140 (763)
Q Consensus 102 h~------~~V~~l~ws~~~~~l~s~s~~------~~~~~d~~i~~wd~~~ 140 (763)
+. ..+.++.|+|+|+.+++++.+ .....++.+.+||...
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 32 237899999999988877510 0000138899998754
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.06 E-value=4.8e-10 Score=132.91 Aligned_cols=96 Identities=11% Similarity=0.258 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCEEEEEeC---------CCeEEEEEccCceE---EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATE---------DSKILLHRFNWQRL---WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~---------Dg~V~v~~l~~~~v---~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
|..++|||||++||+++. ++.|++|++.+... ..+ ...+.+++|||||+.||++. ++.|++|++.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 789999999999999876 78999999966555 333 24688999999999999986 7899999999
Q ss_pred CCeEEEEe-cccCCce-----------------eEEEeecCCCceeccC
Q 004298 92 NGKLLRSL-KSHTVAV-----------------VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 ~g~~~~~l-~~h~~~V-----------------~~l~ws~~~~~l~s~s 122 (763)
+|+..... .++...| .++.|+|||+.+++++
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 88775432 2222222 4899999999998875
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.04 E-value=4.5e-10 Score=133.16 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=82.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEecCCC----cEEEEEEccCCCEEEEEEc---------CCcEEEEEc
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTISPGK----SVTSLCWRPDGKAIAVGLE---------DGTITLHDV 90 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~~~~----~V~~l~wspDG~~Lasg~~---------Dg~V~lwdv 90 (763)
..++|+|++.+++ .+.|+.|++|++.+ +....+.+.. .+.+++|||||++||+++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 3689999996555 45699999999954 4333333222 3889999999999999886 799999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++|+.+.... ....+.+++|+|||+.++.++ ++.+++|+...
T Consensus 98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~ 139 (719)
T 1z68_A 98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPG 139 (719)
T ss_dssp TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-------TTEEEEESSTT
T ss_pred CCCcccccee-cCcccccceECCCCCEEEEEE-------CCeEEEEeCCC
Confidence 9988732111 135689999999999999884 78999999865
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.03 E-value=3.6e-09 Score=126.07 Aligned_cols=108 Identities=11% Similarity=0.182 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CC-C----cEEEEEEccCCCEEEEEEcC---------CcEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PG-K----SVTSLCWRPDGKAIAVGLED---------GTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~-~----~V~~l~wspDG~~Lasg~~D---------g~V~ 86 (763)
....++|+|++.+++++ |++|++|++ +++....+. +. . ....+.|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999988886 999999999 455433333 21 1 23458999999999999987 5667
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+||+++|+.. .+..|...+...+|+|||+.++.++ ++.+.+|+...
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~ 141 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-------NNDIYVKIEPN 141 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-------TTEEEEESSTT
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-------CCeEEEEECCC
Confidence 9999998864 4667788899999999999999885 78899998765
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.01 E-value=1.8e-08 Score=108.60 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCEEEEEeCC----CeEEEEEccC--ce---EEEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATED----SKILLHRFNW--QR---LWTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D----g~V~v~~l~~--~~---v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~ 92 (763)
+..++|+|++++|++++.+ +.|.+|+++. .. +.... ++..+..+++ ||++|++++ .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 5678999999999988875 7999999843 22 33333 4567788888 899888777 688999999975
Q ss_pred CeEEEEe------cc--------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC----C-CCCcccCCc
Q 004298 93 GKLLRSL------KS--------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP----Q-MPGLVSGDT 153 (763)
Q Consensus 93 g~~~~~l------~~--------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~----~-l~~~~s~~~ 153 (763)
...+..+ .+ +...+.+++|+|+|++++.++ ..++.+.+|+...... . +..... ..
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~-----~~~~~v~v~~~~~~~~~~~~~~l~~~~~-~~ 203 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD-----LGTDQIHKFNINPNANADNKEKFLTKGT-PE 203 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEECTTCCTTTCCCCEEEEE-EE
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe-----CCCCEEEEEEEcCCCCcccccceeeccc-cc
Confidence 4322111 11 123458899999998665443 1578899997654221 1 100000 00
Q ss_pred ccccCCcccccceecccCCCeeEEEEEc-CCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEecC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
.......... ....++++++.+++++ .++.|.+|++..-....+. +... .... .....++|||
T Consensus 204 ~~~~~~~~~~--~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~-----~~~~--------~~~~~i~~sp 268 (361)
T 3scy_A 204 AFKVAPGSGP--RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD-----TVNA--------QGSGDIHLSP 268 (361)
T ss_dssp EEECCTTCCE--EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC-----SSCC--------CCEEEEEECT
T ss_pred ceecCCCCCC--eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC-----CCCC--------CCcccEEECC
Confidence 0000001111 1234567777665555 7999999986532111111 0000 0000 1245899999
Q ss_pred CCCEEEEEeec
Q 004298 232 DLFHLTVLCSG 242 (763)
Q Consensus 232 Dg~~Llv~~~d 242 (763)
||++|+++..+
T Consensus 269 dg~~l~v~~~~ 279 (361)
T 3scy_A 269 DGKYLYASNRL 279 (361)
T ss_dssp TSSEEEEEECS
T ss_pred CCCEEEEECCC
Confidence 99999887664
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.98 E-value=4.1e-09 Score=114.23 Aligned_cols=204 Identities=11% Similarity=-0.010 Sum_probs=119.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEEec--CCCcEEEEEEccCCCE--EEEEE-------------cCC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWTIS--PGKSVTSLCWRPDGKA--IAVGL-------------EDG 83 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~~~--~~~~V~~l~wspDG~~--Lasg~-------------~Dg 83 (763)
.+..++|+|+++++++++.+ .|.+|+++ ++...... .+..+.+++|+|||++ ++++. .+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 47789999999999988887 99999984 54332222 2233567999999994 55553 689
Q ss_pred cEEEEEcc-CCeEEEEec----ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 84 TITLHDVE-NGKLLRSLK----SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 84 ~V~lwdve-~g~~~~~l~----~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
.+.+|++. +|+....+. .+...+.++.|+|+|++++++. ..++.+.+|+.... ..+... ... ... .
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~-----~~~~~v~~~~~~~~-g~~~~~-~~~-~~~-~ 190 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD-----LTANKLWTHRKLAS-GEVELV-GSV-DAP-D 190 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEECTT-SCEEEE-EEE-ECS-S
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc-----CCCCEEEEEEECCC-CCEEEe-eeE-ecC-C
Confidence 99999997 577655443 2456899999999999776553 13678999987620 111000 000 000 0
Q ss_pred CcccccceecccCCCeeEEEEEc-CCCcEEEEEcCceeeeee-----eecccccccccCCCCCceeeeccceeeEE-ecC
Q 004298 159 SEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGIFPIGKI-----NIHKFHVAIPNADEQGTCRLLNASIYKVA-LSK 231 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~~ig~~-----~i~~~~~~~~s~~~~~~~~l~~~~I~~v~-~Sp 231 (763)
..... ....++++++.+++++ .+++|.+|.++.- .|.. .+...+... . +....+. -...+..++ |||
T Consensus 191 ~g~~p--~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~-~-g~~~~~~-~~~~~~~i~~~sp 264 (365)
T 1jof_A 191 PGDHP--RWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGI-P-DRDPETG-KGLYRADVCALTF 264 (365)
T ss_dssp TTCCE--EEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTC-C-CBCTTTS-SBSEEEEEEEECT
T ss_pred CCCCC--CEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCc-C-Ccccccc-cccccccEEEECC
Confidence 00111 1223567777776665 5789999976421 1111 011111000 0 0000000 000356899 999
Q ss_pred CCCEEEEEeec
Q 004298 232 DLFHLTVLCSG 242 (763)
Q Consensus 232 Dg~~Llv~~~d 242 (763)
||++|+++..+
T Consensus 265 dG~~l~v~~~~ 275 (365)
T 1jof_A 265 SGKYMFASSRA 275 (365)
T ss_dssp TSSEEEEEEEE
T ss_pred CCCEEEEECCC
Confidence 99999877543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.96 E-value=1.5e-08 Score=109.79 Aligned_cols=111 Identities=5% Similarity=-0.061 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCE--EEEEe-------------CCCeEEEEEcc--CceEEEec-----CCCcEEEEEEccCCCEEEEEE-
Q 004298 24 IKIAEWNPEKDL--LAMAT-------------EDSKILLHRFN--WQRLWTIS-----PGKSVTSLCWRPDGKAIAVGL- 80 (763)
Q Consensus 24 V~~l~~sP~~~l--LA~~s-------------~Dg~V~v~~l~--~~~v~~~~-----~~~~V~~l~wspDG~~Lasg~- 80 (763)
+..++|+|+|+. +++++ .++.+.+|+++ ++....+. ++..+.+++|+|||++++++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 455899999984 44443 68999999994 44332222 456899999999999988876
Q ss_pred cCCcEEEEEcc-CCeEE--EEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 81 EDGTITLHDVE-NGKLL--RSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 81 ~Dg~V~lwdve-~g~~~--~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.++.|++|++. +|+.. ..+. .|...+.+++|+|+|+++++++ ..++++.+|+..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-----~~~~~v~v~~~~ 223 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM-----EAGNRICEYVID 223 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEEC
T ss_pred CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEE-----CCCCeEEEEEEe
Confidence 47899999998 78753 3343 2456799999999998876654 146788888654
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.94 E-value=1.8e-08 Score=108.41 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=103.9
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEEcc--C-----c--------eEEEecCCCcEEEEEEccCCCEEEEEE-cCCcE
Q 004298 23 QIKIAEWNPEKDLLAMAT-EDSKILLHRFN--W-----Q--------RLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTI 85 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~--~-----~--------~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V 85 (763)
.+.+++|+|+++++++++ .++.|.+|+++ + + ......++..+.+++|+|||+++++++ .++.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 358899999999666555 57899999984 2 1 123344667789999999999988887 69999
Q ss_pred EEEEccCCeE--EEEec---ccCCceeEEEeecCCCceeccCCCCCccc-CCceeecCCCCCCCCCCCcccCCcccccCC
Q 004298 86 TLHDVENGKL--LRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYE-DRTSRFFPPAPRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 86 ~lwdve~g~~--~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~-d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~ 159 (763)
.+|++.+++. +..+. .+...+.+++|+|+|++++.+. .. ++.+.+|+..+....+.... ....
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-----~~~~~~i~v~~~~~~~g~~~~~~----~~~~-- 304 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-----RLKADGVAIFKVDETNGTLTKVG----YQLT-- 304 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-----CSSSCEEEEEEECTTTCCEEEEE----EEEC--
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-----CCCCCEEEEEEEcCCCCcEEEee----EecC--
Confidence 9999998865 23332 2334578999999999875543 13 57899998753211110000 0000
Q ss_pred cccccceecccCCCeeEEEEEc-CCCcEEEEEcC
Q 004298 160 EDSFRELANSSHQRFSILCSGD-KDGSICFNIFG 192 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~ 192 (763)
.... ....+++++++|++++ .++.|.+|.++
T Consensus 305 g~~~--~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 GIHP--RNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCC--CEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCC--ceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 0011 1233567777676666 77999998654
No 161
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.93 E-value=1.6e-08 Score=106.80 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT------------EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s------------~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.+..++|+|+++.+++++ .++.|.+|++ +++.+..+..+..+.+++|+|||++|+++ ++.|++||
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence 366799999999988886 5799999999 55666777777778899999999998888 78999999
Q ss_pred ccCCeEEEEecc
Q 004298 90 VENGKLLRSLKS 101 (763)
Q Consensus 90 ve~g~~~~~l~~ 101 (763)
+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~ 172 (337)
T 1pby_B 161 PEAGTLVEDKPI 172 (337)
T ss_dssp TTTTEEEEEECS
T ss_pred CCCCcEeeeeec
Confidence 999988876654
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.91 E-value=1.5e-08 Score=118.73 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC----------CeEEEEEccC------ceEEEec--CCCcEEEEEEccCCCEEEEEEcCC-
Q 004298 23 QIKIAEWNPEKDLLAMATED----------SKILLHRFNW------QRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDG- 83 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D----------g~V~v~~l~~------~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg- 83 (763)
.+..++|||+|+.|+.++.+ ..|++|++.+ +....+. +...+.+++|||||++|+.++.++
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 47899999999999998876 5799999966 5555544 345678899999999999888553
Q ss_pred -------cEEEEEcc-CC---eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCC--ceeecCCCCC-CCCCCCcc
Q 004298 84 -------TITLHDVE-NG---KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR--TSRFFPPAPR-IPQMPGLV 149 (763)
Q Consensus 84 -------~V~lwdve-~g---~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~--~i~~wd~~~~-~~~l~~~~ 149 (763)
.|++||++ +| +.......|...+..+.|+|||+++++++ .++ .+..|+.... ...+..
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~------~~~~~~l~~~~~~~~~~~~l~~-- 282 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD------RTGWWNLHRVDPATGAATQLCR-- 282 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC------TTSSCEEEEECTTTCCEEESSC--
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC------CCCCeEEEEEECCCCceeeccc--
Confidence 79999999 57 44444445578899999999999666665 455 4455554321 111111
Q ss_pred cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 150 SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
.+.... ...-........+.+++.++++++. |.+++|.++
T Consensus 283 -~~~~~~-~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 283 -REEEFA-GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp -CSSBSS-CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred -cccccc-CccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 111100 0000000011233456778999998 999999643
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.91 E-value=1.2e-08 Score=110.71 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=72.7
Q ss_pred EEEcCCCCEEEEEeC-CC--eEEEEEccCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 27 AEWNPEKDLLAMATE-DS--KILLHRFNWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 27 l~~sP~~~lLA~~s~-Dg--~V~v~~l~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+|||||+.||.++. ++ .|++|++.+.....+.+ +..+.+++|+|||+.|+.+..++.|++||+.+++....+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999887 66 48888886666655543 23344678999999999999999999999999988777666
Q ss_pred cCCceeEEEe--ecCCCcee
Q 004298 102 HTVAVVCLNW--EEDAQPSK 119 (763)
Q Consensus 102 h~~~V~~l~w--s~~~~~l~ 119 (763)
+...+....| +++++.++
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~ 140 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLV 140 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEE
T ss_pred hhhcccccceeECCCCCeec
Confidence 6666655555 78888765
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.90 E-value=7.5e-09 Score=119.49 Aligned_cols=174 Identities=10% Similarity=-0.027 Sum_probs=112.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEccCceEEEecC-C-CcEEEEEEccCCCEEEEEEc---CCcEEEEEccC---C
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRFNWQRLWTISP-G-KSVTSLCWRPDGKAIAVGLE---DGTITLHDVEN---G 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~~~~v~~~~~-~-~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~---g 93 (763)
+|.+++|+|||+.||.++. ||++.||.+++.....+.. . ..+.+++|+|| +.++++.. +...+||.+.. |
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 3999999999999999887 9999999997777766653 3 47999999999 88877775 55566765543 3
Q ss_pred eEEEEecccCCceeEEEeecCCCc--eeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQP--SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~--l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
... .+..+ ..+...+|+|+++. +++++ ++...+||....... ...... . ....++
T Consensus 102 ~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~-------~~~~~l~d~~~g~~~--~l~~~~---------~---~~~~~s 158 (582)
T 3o4h_A 102 EEQ-RLEAV-KPMRILSGVDTGEAVVFTGAT-------EDRVALYALDGGGLR--ELARLP---------G---FGFVSD 158 (582)
T ss_dssp CCE-ECTTS-CSBEEEEEEECSSCEEEEEEC-------SSCEEEEEEETTEEE--EEEEES---------S---CEEEEE
T ss_pred ccc-cccCC-CCceeeeeCCCCCeEEEEecC-------CCCceEEEccCCcEE--EeecCC---------C---ceEEEC
Confidence 333 44332 34557789998864 44443 344458876542100 000000 0 223456
Q ss_pred CCeeEEEEEcCC----CcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 172 QRFSILCSGDKD----GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 172 ~~~~~L~sgs~D----G~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
++++.|++++.+ +.|++|+...-....+. -..+.+..++|||||+.|+.
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~------------------~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD------------------SGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCEEEC------------------CSSCEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee------------------cCCCccccceECCCCCEEEE
Confidence 788889877766 67777775432221110 01134678999999999983
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.84 E-value=2.5e-08 Score=118.86 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=74.7
Q ss_pred EEEEEcCCCCEEEEEeCC---------CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 25 KIAEWNPEKDLLAMATED---------SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~D---------g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..++|||||+.||.++.+ +.+++|++.+..+..+. +...+...+|||||+.||.+ .|+.|++|++.+|+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 458999999999998876 56679999666665554 45679999999999999998 47899999999887
Q ss_pred EEEE-ecccCCce-----------------eEEEeecCCCceeccC
Q 004298 95 LLRS-LKSHTVAV-----------------VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 95 ~~~~-l~~h~~~V-----------------~~l~ws~~~~~l~s~s 122 (763)
..+. ..++...+ ..+.|+|||+.++..+
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 5542 22332222 3589999999888765
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.77 E-value=3.8e-07 Score=94.51 Aligned_cols=184 Identities=12% Similarity=0.072 Sum_probs=123.2
Q ss_pred CeEEEEE-cCCCCEEEEEeC-CCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEW-NPEKDLLAMATE-DSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~-sP~~~lLA~~s~-Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+..+++ .+++.++++... ++.|.+|+.+++.+..+. +...+.+++++|+|+++++...++.|.+||. +++.+..
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 156 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHK 156 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEE
Confidence 4788999 577777776643 789999998888877765 3357899999999998888788899999995 4777766
Q ss_pred ec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+. .+...+.++++++++...++.. .++.+.+|+...... ........+ ... ...+.++++++
T Consensus 157 ~~~~~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~---~~~~~~g~~-----~~p--~~i~~d~~G~l 220 (286)
T 1q7f_A 157 FGCSKHLEFPNGVVVNDKQEIFISDN------RAHCVKVFNYEGQYL---RQIGGEGIT-----NYP--IGVGINSNGEI 220 (286)
T ss_dssp EECTTTCSSEEEEEECSSSEEEEEEG------GGTEEEEEETTCCEE---EEESCTTTS-----CSE--EEEEECTTCCE
T ss_pred eCCCCccCCcEEEEECCCCCEEEEEC------CCCEEEEEcCCCCEE---EEEccCCcc-----CCC--cEEEECCCCCE
Confidence 64 3445789999999998777765 678899998653210 000000000 011 12334567788
Q ss_pred EEEEcCCC-cEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 177 LCSGDKDG-SICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 177 L~sgs~DG-~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
+++...++ .|.+|+.....+..+..+. . ...+..++++|||+ ++++.
T Consensus 221 ~v~~~~~~~~i~~~~~~g~~~~~~~~~~---------~-------~~~~~~i~~~~~g~-l~vs~ 268 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQDGQLISALESKV---------K-------HAQCFDVALMDDGS-VVLAS 268 (286)
T ss_dssp EEEECSSSCEEEEECTTSCEEEEEEESS---------C-------CSCEEEEEEETTTE-EEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEEEcccC---------C-------CCcceeEEECCCCc-EEEEC
Confidence 88887776 9999975443333332110 0 01255789999986 55554
No 167
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.74 E-value=1.8e-07 Score=110.88 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----eEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCc------------
Q 004298 23 QIKIAEWNPEKDLLAMATEDS-----KILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGT------------ 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~------------ 84 (763)
.+..++|||||++||.+..++ .|++|++.+...... ..+..+.+++|+|||+.|+.+..++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 378899999999999876543 899999955544332 22233678999999999999998776
Q ss_pred ----EEEEEccCCe----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 85 ----ITLHDVENGK----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 85 ----V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|++|++.+++ .+.....|...+..+.|+|+|++++..+..... .+..+.+||..
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~ 267 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD-PVNRLWYCDLQ 267 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS-SCCEEEEEEGG
T ss_pred CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC-CccEEEEEECc
Confidence 9999998876 333333345568899999999988765411000 14567777764
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.72 E-value=5.1e-08 Score=114.14 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=100.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEEcc--C-ceEEEec------CCCcEEEEEEccCCCEEEEEEcC----------
Q 004298 26 IAEWN--PEKDL-LAMATE-DSKILLHRFN--W-QRLWTIS------PGKSVTSLCWRPDGKAIAVGLED---------- 82 (763)
Q Consensus 26 ~l~~s--P~~~l-LA~~s~-Dg~V~v~~l~--~-~~v~~~~------~~~~V~~l~wspDG~~Lasg~~D---------- 82 (763)
...|+ |||+. ||.++. +..|+++++. + .....+. ++..+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45665 99998 776654 5667777776 4 5555544 34578899999999999999877
Q ss_pred CcEEEEEccC------CeEEEEec-ccCCceeEEEeecCCCceeccCCC--CCcccCCceeecCCCC-C-CCCCCCcccC
Q 004298 83 GTITLHDVEN------GKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGN--IPTYEDRTSRFFPPAP-R-IPQMPGLVSG 151 (763)
Q Consensus 83 g~V~lwdve~------g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~--~~~~~d~~i~~wd~~~-~-~~~l~~~~s~ 151 (763)
..|++||+.+ ++. ..+. .+...+..+.|+|||+.++..+.+ ...+....+.+||... . .........+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999987 554 4555 556788899999999988766511 0111224677887762 1 0000000001
Q ss_pred CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 152 DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
+ .... ....++++++++++++.+|..++|.++
T Consensus 240 ~-------~~~~--~~~~~spdg~l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 240 P-------EEAI--AQAEWAPDGSLIVATDRTGWWNLHRVD 271 (662)
T ss_dssp T-------TBCE--EEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred C-------CceE--cceEECCCCeEEEEECCCCCeEEEEEE
Confidence 0 0111 122345666788888889977777654
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.72 E-value=6.8e-07 Score=92.60 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC-------CCcEEEEEE-ccCCCEEEEEEc-CCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-------GKSVTSLCW-RPDGKAIAVGLE-DGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~-------~~~V~~l~w-spDG~~Lasg~~-Dg~V~lwdve~ 92 (763)
..+..++++|+++++++.+.++.|.+|+.+++.++.+.. ...+.++++ .++|+++++... ++.|++|| .+
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 108 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence 347899999999998888889999999998887777642 246899999 578877777654 89999999 67
Q ss_pred CeEEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
++.+..+.. +...+.+++++++++.+++.. .++.+.+|+....... .......+ ... .....+
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~---~~~~~~~~-----~~p--~~i~~~ 172 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVEC------KVMRVIIFDQNGNVLH---KFGCSKHL-----EFP--NGVVVN 172 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEEE---EEECTTTC-----SSE--EEEEEC
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEEC------CCCEEEEEcCCCCEEE---EeCCCCcc-----CCc--EEEEEC
Confidence 888777743 345789999999998777765 5788999986432100 00000000 001 123345
Q ss_pred CCeeEEEEEcCCCcEEEEEcCc
Q 004298 172 QRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
++++++++.+.++.|++|+...
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~g 194 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYEG 194 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETTC
T ss_pred CCCCEEEEECCCCEEEEEcCCC
Confidence 6778888888899999998654
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.69 E-value=3.2e-06 Score=90.00 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=108.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEEc-cCceEEEecC--CCcEEEEEEccCCC
Q 004298 22 SQIKIAEWNPEKDLLAMATED------------------------SKILLHRF-NWQRLWTISP--GKSVTSLCWRPDGK 74 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D------------------------g~V~v~~l-~~~~v~~~~~--~~~V~~l~wspDG~ 74 (763)
+.|..++++|+|+++++...+ +.|.+|+. +++.+..... -..+.+++++|+|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 469999999999999888777 47999998 4665544432 24789999999999
Q ss_pred EEEEEEcCCcEEEEEccCCe-EEEEe---------cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC
Q 004298 75 AIAVGLEDGTITLHDVENGK-LLRSL---------KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP 143 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdve~g~-~~~~l---------~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~ 143 (763)
++++...++.|++||..... .+..+ ..+......++++| ++..+++.+ +.++.++.|+......
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-----~~~~~I~~~~~~g~~~ 178 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-----YCNSRIVQFSPSGKFV 178 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-----SSCCEEEEECTTSCEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-----CCCCeEEEEcCCCCEE
Confidence 88888889999999975332 45555 23445789999999 787777663 1478899998543211
Q ss_pred C-CCCcccCCcccccCCcccc-cceecccCCC-eeEEEEEcCCCcEEEEEcC
Q 004298 144 Q-MPGLVSGDTGFTDDSEDSF-RELANSSHQR-FSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 144 ~-l~~~~s~~~~~~~~~~~~~-~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~ 192 (763)
. ......+... . ...+ .....+.+++ ++++++...+++|++|+..
T Consensus 179 ~~~~~~g~~~~~-~---~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 179 TQWGEESSGSSP-R---PGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECEECCSSSC-C---TTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeccCCCCCCC-C---CcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 0 0000000000 0 0000 0112234455 7888888899999999875
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.68 E-value=1.1e-06 Score=93.22 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~~~ 96 (763)
.+..++|+|++++++++..++.|.+|+..+..+..+ .+...+.+++|+|||++++++..+ +.|.+||.++++..
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 478999999999888888899999999955444333 456789999999999988887776 78999999887765
Q ss_pred EEec--ccCCceeEEEeecCCCceeccC
Q 004298 97 RSLK--SHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~--~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+. .+...+.++.++|++...++..
T Consensus 126 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 126 DIIEDLSTAYCIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred EEEccCccCCcccceEECCCCCEEEEec
Confidence 4443 2345789999999998777654
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.68 E-value=1.5e-07 Score=100.32 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC---C--eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcC--------------
Q 004298 23 QIKIAEWNPEKDLLAMATED---S--KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED-------------- 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g--~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D-------------- 82 (763)
.+..++|||+|+.||.++.+ + .|++|++.+.....+. .+. +.+++|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 47789999999999987754 3 3777777655444443 233 9999999999999988743
Q ss_pred -------------CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 83 -------------GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 -------------g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..|++||+.+++.+..+.. . .+..+.|+|+| .+++++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEe
Confidence 5789999998887566655 4 88999999999 666554
No 173
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.63 E-value=2.4e-07 Score=100.83 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=123.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc------------CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN------------WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~------------~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
.+..++++++..++++|+.++ +.+|++. .+..+.+.... |+.++| ||+.|+++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 489999999999999999885 5569972 23334455555 999999 99999999 8899999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.+.........|...|.++.|.+.. ++.+. .||.+.+|+....... .. ...+.++ ++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~------~dG~L~v~dl~~~~~~--~~-----------~~~Vs~v--~W 170 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILN------SVNDLSALDLRTKSTK--QL-----------AQNVTSF--DV 170 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEE------TTSEEEEEETTTCCEE--EE-----------EESEEEE--EE
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEE------CCCCEEEEEccCCccc--cc-----------cCCceEE--EE
Confidence 8766555666777889888877543 55555 6999999998742111 00 1223333 45
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceee---eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPI---GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~i---g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++ ++.|..||++++|..+...+ .+++.. ........ .+..|.+++|.+++.++++-..
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P---p~~~~~~~------~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP---SELEELPV------EEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC---HHHHTSCT------TTSEEEEEEESSSSEEEEEEEC
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccccccceecCC---cccccccC------CCeeEEEEEEecCCeEEEEEcC
Confidence 5777 67899999999997665553 233211 00000000 0135889999999888876554
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.62 E-value=9.3e-08 Score=103.56 Aligned_cols=81 Identities=11% Similarity=-0.006 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEecCC-CcE-EEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTISPG-KSV-TSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~~~-~~V-~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+..++|||+|+.||.+... ..|++|++.+.....+..+ ..+ ..+.|+|||+.|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5678999999998877653 3688888866665555432 232 3378999999999999999999999998887655
Q ss_pred ecccCC
Q 004298 99 LKSHTV 104 (763)
Q Consensus 99 l~~h~~ 104 (763)
...+..
T Consensus 118 ~~~~~~ 123 (396)
T 3c5m_A 118 YTVDEE 123 (396)
T ss_dssp EECCTT
T ss_pred Eecccc
Confidence 554443
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.60 E-value=1.2e-06 Score=91.29 Aligned_cols=199 Identities=12% Similarity=0.034 Sum_probs=121.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-----CCCcEEEEEEccCCCEEEEE----E-----------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-----PGKSVTSLCWRPDGKAIAVG----L----------- 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-----~~~~V~~l~wspDG~~Lasg----~----------- 80 (763)
..+..++++|+++++++...++.|.+|+. +++...... ....+..++++|+|+++++. .
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~ 148 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM 148 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence 34889999999999887777789999999 665432222 12346789999999988873 2
Q ss_pred --cCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 81 --EDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 81 --~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
..+.|..++.. ++. ..+..+......++|+|+++.+++.+ .++.+..|+.... ..+. .....+ ..
T Consensus 149 ~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~------~~~~i~~~~~~~~-g~~~---~~~~~~-~~ 215 (296)
T 3e5z_A 149 ELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDT------GDNATHRYCLNAR-GETE---YQGVHF-TV 215 (296)
T ss_dssp CSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEET------TTTEEEEEEECSS-SCEE---EEEEEE-CC
T ss_pred cCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeC------CCCeEEEEEECCC-CcCc---CCCeEe-eC
Confidence 13455555544 554 34445566789999999998776655 5778888886521 1110 000000 00
Q ss_pred CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe-cCCCCEEE
Q 004298 159 SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL-SKDLFHLT 237 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~-SpDg~~Ll 237 (763)
.......+ ..+++++++++. ++.|.+|+........+..+ .. +.+++| +||++.|+
T Consensus 216 ~~~~p~~i--~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~------------------~~-~~~~~f~~~d~~~L~ 272 (296)
T 3e5z_A 216 EPGKTDGL--RVDAGGLIWASA--GDGVHVLTPDGDELGRVLTP------------------QT-TSNLCFGGPEGRTLY 272 (296)
T ss_dssp SSSCCCSE--EEBTTSCEEEEE--TTEEEEECTTSCEEEEEECS------------------SC-CCEEEEESTTSCEEE
T ss_pred CCCCCCeE--EECCCCCEEEEc--CCeEEEECCCCCEEEEEECC------------------CC-ceeEEEECCCCCEEE
Confidence 00011112 344667766665 78899887553333333211 12 457888 68999999
Q ss_pred EEeecCccccccCCCCCCcEEEEEeecccccc
Q 004298 238 VLCSGQLSQEELGGHGMHGLHCLVLDTSIFSK 269 (763)
Q Consensus 238 v~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~ 269 (763)
+++.+ +++.+..++.-+..
T Consensus 273 v~t~~-------------~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 273 MTVST-------------EFWSIETNVRGLEH 291 (296)
T ss_dssp EEETT-------------EEEEEECSCCBCCC
T ss_pred EEcCC-------------eEEEEEcccccccc
Confidence 88653 55666665555443
No 176
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.60 E-value=1.8e-07 Score=99.29 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEEccC----ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMATED------------SKILLHRFNW----QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D------------g~V~v~~l~~----~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
+..++|+|+++++++++.+ +.|.+|++.. +.+....+...+.+++|+|||+ +++++ +.|++
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~ 170 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYK 170 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEE
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEE
Confidence 6789999999999988865 8999999843 2333444455688999999999 55553 44999
Q ss_pred EEccCCeEEEEecc
Q 004298 88 HDVENGKLLRSLKS 101 (763)
Q Consensus 88 wdve~g~~~~~l~~ 101 (763)
||+.+++.+..+..
T Consensus 171 ~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 171 MDVKTGKYTVALPL 184 (349)
T ss_dssp ECTTTCCEEEEECS
T ss_pred EeCCCCceeccccc
Confidence 99999988877654
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.58 E-value=8.8e-07 Score=95.78 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=108.1
Q ss_pred EEcCCCCEEEEEe----------------------CCCeEEEEEccCceEEEe-cCCCcEEEEEEcc-CCCEEEEEEcC-
Q 004298 28 EWNPEKDLLAMAT----------------------EDSKILLHRFNWQRLWTI-SPGKSVTSLCWRP-DGKAIAVGLED- 82 (763)
Q Consensus 28 ~~sP~~~lLA~~s----------------------~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wsp-DG~~Lasg~~D- 82 (763)
.++|++.+++... .+..|.+|++.......+ .+...+..++|+| ||+.|+....+
T Consensus 131 ~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~ 210 (388)
T 3pe7_A 131 VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP 210 (388)
T ss_dssp EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC
T ss_pred eECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC
Confidence 3489999887432 346788999844444333 4556789999999 99999888764
Q ss_pred -----CcEEEEEccCCeEEEEecccC--CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 83 -----GTITLHDVENGKLLRSLKSHT--VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 83 -----g~V~lwdve~g~~~~~l~~h~--~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
..|.++|...++. ..+..+. ..+..+.|+|+|+.++..+... ...+..+.+||.............+....
T Consensus 211 ~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 288 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHL 288 (388)
T ss_dssp TTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEE
T ss_pred CCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceee
Confidence 3778888765544 4444444 3578899999999776543100 00122488899865321110000010000
Q ss_pred ccCCcccccceecccCCCeeEEEEE---------cCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceee
Q 004298 156 TDDSEDSFRELANSSHQRFSILCSG---------DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYK 226 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~sg---------s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~ 226 (763)
. ...... .++++++.|+.. ..++.|++|+...-....+..+.........+. ...+..
T Consensus 289 ~----~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~ 355 (388)
T 3pe7_A 289 M----SNYDGS--LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDR-------QVTHPH 355 (388)
T ss_dssp E----ECTTSS--EEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBS-------STTCCC
T ss_pred e----ecCCCC--eEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccccccc-------ccCCCC
Confidence 0 000001 234555555543 446688888866533322221110000000000 012567
Q ss_pred EEecCCCCEEEEEee
Q 004298 227 VALSKDLFHLTVLCS 241 (763)
Q Consensus 227 v~~SpDg~~Llv~~~ 241 (763)
++|||||+.|++.+.
T Consensus 356 ~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 356 PSFTPDDKQILFTSD 370 (388)
T ss_dssp CEECTTSSEEEEEEC
T ss_pred ccCCCCCCEEEEEec
Confidence 899999999998764
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.57 E-value=1.1e-06 Score=91.47 Aligned_cols=151 Identities=10% Similarity=0.004 Sum_probs=104.3
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCC--cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGK--SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVC 108 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~ 108 (763)
+++|++++.++.|.+|+. +|+.+|++..+. .+.++.++|||++++ +.++.|..||. +|+.+.++..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 578889999999999999 999999998543 689999999999888 45788999998 899999988653 57889
Q ss_pred EEeecCCCceeccCCCCCccc-CCceeecCCCCCC-CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcE
Q 004298 109 LNWEEDAQPSKNDFGNIPTYE-DRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSI 186 (763)
Q Consensus 109 l~ws~~~~~l~s~s~~~~~~~-d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I 186 (763)
+.+.++|..+++.+ . ++.+..++...+. .... ...+.... .... ......++++++++.+.++.|
T Consensus 82 ~~~~~dG~~lv~~~------~~~~~v~~vd~~Gk~l~~~~-~~~~~~~~----~~~~--~~v~~~~~G~~lv~~~~~~~v 148 (276)
T 3no2_A 82 ARILPDGNALVAWC------GHPSTILEVNMKGEVLSKTE-FETGIERP----HAQF--RQINKNKKGNYLVPLFATSEV 148 (276)
T ss_dssp EEECTTSCEEEEEE------STTEEEEEECTTSCEEEEEE-ECCSCSSG----GGSC--SCCEECTTSCEEEEETTTTEE
T ss_pred cEECCCCCEEEEec------CCCCEEEEEeCCCCEEEEEe-ccCCCCcc----cccc--cCceECCCCCEEEEecCCCEE
Confidence 99999999888765 3 4455555543321 0000 00000000 0000 011235678899999999999
Q ss_pred EEEEcCceeeeee
Q 004298 187 CFNIFGIFPIGKI 199 (763)
Q Consensus 187 ~lw~~~~~~ig~~ 199 (763)
..|+.....+-++
T Consensus 149 ~~~d~~G~~~w~~ 161 (276)
T 3no2_A 149 REIAPNGQLLNSV 161 (276)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9987543333333
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.54 E-value=6.7e-07 Score=105.64 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCEEEEE-----eCCCeEEEEEccCceEE-E-ecCCCcEEEEEEccCCCEEEEEEcCCc-----------
Q 004298 23 QIKIAEWNPEKDLLAMA-----TEDSKILLHRFNWQRLW-T-ISPGKSVTSLCWRPDGKAIAVGLEDGT----------- 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-----s~Dg~V~v~~l~~~~v~-~-~~~~~~V~~l~wspDG~~Lasg~~Dg~----------- 84 (763)
.+..++|||||++||.+ +.+..|++|++.+.... . ...+....+++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 48899999999999954 33468999999554432 1 112222268999999999999998776
Q ss_pred --EEEEEccCCe----EEEEecccCCceeEEEeecCCCceeccC
Q 004298 85 --ITLHDVENGK----LLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 85 --V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|++|++.++. .+.....|...+..+.|+|+|++++..+
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence 9999998876 4444444556889999999999887665
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.54 E-value=3.1e-06 Score=97.15 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=127.2
Q ss_pred CCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc--CCeEEEEecccCCcee
Q 004298 31 PEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE--NGKLLRSLKSHTVAVV 107 (763)
Q Consensus 31 P~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve--~g~~~~~l~~h~~~V~ 107 (763)
|.+.++++...+++|.+++. +++.+..+..+..+..+.|+|||+++.+++.|+.|.+||+. +++.+.++... ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence 44456666777899999999 66777888888888999999999999999999999999995 88888888763 4568
Q ss_pred EEEee----cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC----CcccccceecccCCCeeEEEE
Q 004298 108 CLNWE----EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD----SEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 108 ~l~ws----~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~----~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+.|+ |+|+++++++ +.++++.++|..+. ..+. .........+. .+..+..+... +.....++.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n-----~~~~~v~ViD~~t~-~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s-~~~~~~vv~ 315 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGA-----YWPPQYVIMDGETL-EPKK-IQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVN 315 (567)
T ss_dssp EEEECCSTTCTTTEEEEEE-----EETTEEEEEETTTC-CEEE-EEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEE
T ss_pred eeEEccccCCCCCEEEEEE-----ccCCeEEEEECCCC-cEEE-EEeccccccccccccCCCceEEEEEc-CCCCEEEEE
Confidence 99999 6999887775 46788999986541 1110 00000000000 00011112111 122345566
Q ss_pred EcCCCcEEEEEcCcee---eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCc
Q 004298 180 GDKDGSICFNIFGIFP---IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHG 256 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~---ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~ 256 (763)
...+|+|.+.++.... +..+... ...+.+.|+|||+++++++... ..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~-------------------~~~~d~~~~pdgr~~~va~~~s-----------n~ 365 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAE-------------------RFLHDGGLDGSHRYFITAANAR-----------NK 365 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECC-------------------SSEEEEEECTTSCEEEEEEGGG-----------TE
T ss_pred ecCCCeEEEEecCCCccceeeeeecc-------------------ccccCceECCCCCEEEEEeCCC-----------Ce
Confidence 6778888888765421 2222100 1134678999999999987543 25
Q ss_pred EEEEEeecc
Q 004298 257 LHCLVLDTS 265 (763)
Q Consensus 257 l~~~~ld~~ 265 (763)
+.++.+++.
T Consensus 366 V~ViD~~t~ 374 (567)
T 1qks_A 366 LVVIDTKEG 374 (567)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 666655543
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.53 E-value=1.8e-06 Score=90.06 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=76.4
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
...++|+|+++ +++++..++.|..|+..++ ...+ .+...+.+++|+|||+++++...++.|.+||..+|+.......
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 108 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS 108 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec
Confidence 67899999998 7888888999999999665 4333 3566799999999999888777789999999988876544322
Q ss_pred c----CCceeEEEeecCCCceec
Q 004298 102 H----TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 102 h----~~~V~~l~ws~~~~~l~s 120 (763)
. ...+..++++|+|++.++
T Consensus 109 ~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 109 FEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp ETTEECCCCCCEEECTTSCEEEE
T ss_pred cCCCCCCCCCCEEECCCCCEEEE
Confidence 1 235678999999998776
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.51 E-value=7.2e-07 Score=94.56 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.|.++.|+|+...++..+.++.+..| .++.+..+. +...+.+++|+|||++++++..++.|.+||.++++.......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 37788999998877777778888888 344444443 445679999999999888888999999999998887665545
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccC----CceeecCCCC
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYED----RTSRFFPPAP 140 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d----~~i~~wd~~~ 140 (763)
+...+.++.|+++++.+++.. .+ +.+..|+...
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~------~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYL------GDFKSTGGIFAATENG 121 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEEC------TTSSSCCEEEEECTTS
T ss_pred CCCCcceEEECCCCcEEEEeC------CCCCCCceEEEEeCCC
Confidence 567899999999998777654 33 5788888764
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.50 E-value=1.4e-05 Score=91.82 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc---cCceEEEecCCCcEEEEEEc----cCCCEEEEEE-cCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF---NWQRLWTISPGKSVTSLCWR----PDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~~~~v~~~~~~~~V~~l~ws----pDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
..+..+.++|+|+++.+++.|+.|.+|++ +++.+..+..+.....++|+ |||++++++. .+++|.++|..+.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 34789999999999999999999999999 67788888888888999999 7999888876 5699999999998
Q ss_pred eEEEEec
Q 004298 94 KLLRSLK 100 (763)
Q Consensus 94 ~~~~~l~ 100 (763)
+.+..+.
T Consensus 277 ~~~~~i~ 283 (567)
T 1qks_A 277 EPKKIQS 283 (567)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 8877654
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.50 E-value=7.5e-06 Score=85.06 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=112.9
Q ss_pred cccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC--CcEEEEEEccCCCEEEEEEc-CC
Q 004298 7 MRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG--KSVTSLCWRPDGKAIAVGLE-DG 83 (763)
Q Consensus 7 ~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~--~~V~~l~wspDG~~Lasg~~-Dg 83 (763)
+.+.+.++..... ..+.++.+.|+|++++ +.++.|..|+.+|+.+|.+..+ ..+.++.+.|||+++++.+. ++
T Consensus 24 tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 24 TKEIVWEYPLEKG--WECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TTEEEEEEECCTT--CCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CCeEEEEeCCCcc--CCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 4444544443321 2478899999999988 4578899999999999999854 57889999999999999887 88
Q ss_pred cEEEEEccCCeEEEEecc------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 84 TITLHDVENGKLLRSLKS------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
.|..+|. +|+.+.++.. +......+...++|.++++.. .++.+..||...+. +-. .......
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~------~~~~v~~~d~~G~~--~w~-~~~~~~~-- 167 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF------ATSEVREIAPNGQL--LNS-VKLSGTP-- 167 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET------TTTEEEEECTTSCE--EEE-EECSSCC--
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec------CCCEEEEECCCCCE--EEE-EECCCCc--
Confidence 8888885 7888877652 122455667889999888876 68889999876421 000 0000000
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
......++++++++++.+++|..++..
T Consensus 168 --------~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 168 --------FSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp --------CEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred --------cceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 111234677888888888888777644
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.47 E-value=4.7e-06 Score=85.12 Aligned_cols=196 Identities=6% Similarity=-0.075 Sum_probs=124.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+..++++|+++++++.. ++.|.+|+.++..+..+.. ...+.+++++|+|+++++...++.|.+|+..+........
T Consensus 68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp SCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC
T ss_pred CcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc
Confidence 467899999999776655 8899999998776665542 2578999999999987777788999999866554433222
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.....+.+++++++++..++.. .++.+..|+.......... .. .. ... .....+++++++++.
T Consensus 147 ~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~~~~~~~~~--~~--~~-----~~p--~~i~~d~~g~l~v~~ 209 (270)
T 1rwi_B 147 TGLNDPDGVAVDNSGNVYVTDT------DNNRVVKLEAESNNQVVLP--FT--DI-----TAP--WGIAVDEAGTVYVTE 209 (270)
T ss_dssp CSCCSCCCEEECTTCCEEEEEG------GGTEEEEECTTTCCEEECC--CS--SC-----CSE--EEEEECTTCCEEEEE
T ss_pred ccCCCceeEEEeCCCCEEEEEC------CCCEEEEEecCCCceEeec--cc--CC-----CCc--eEEEECCCCCEEEEE
Confidence 3334678999999998766654 5678888887642111000 00 00 011 122344566778877
Q ss_pred cCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEE
Q 004298 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCL 260 (763)
Q Consensus 181 s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~ 260 (763)
..++.|..|+.......... ..+ ...+..+++++||+ ++++.... ..|..+
T Consensus 210 ~~~~~v~~~~~~~~~~~~~~---------~~~--------~~~p~~i~~~~~g~-l~v~~~~~-----------~~v~~~ 260 (270)
T 1rwi_B 210 HNTNQVVKLLAGSTTSTVLP---------FTG--------LNTPLAVAVDSDRT-VYVADRGN-----------DRVVKL 260 (270)
T ss_dssp TTTSCEEEECTTCSCCEECC---------CCS--------CSCEEEEEECTTCC-EEEEEGGG-----------TEEEEE
T ss_pred CCCCcEEEEcCCCCcceeec---------cCC--------CCCceeEEECCCCC-EEEEECCC-----------CEEEEE
Confidence 77888988875432111110 000 02356899999997 65554322 366666
Q ss_pred Eeecc
Q 004298 261 VLDTS 265 (763)
Q Consensus 261 ~ld~~ 265 (763)
.++.+
T Consensus 261 ~~~~~ 265 (270)
T 1rwi_B 261 TSLEH 265 (270)
T ss_dssp CCCGG
T ss_pred cCCCc
Confidence 65544
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.42 E-value=3.7e-06 Score=89.50 Aligned_cols=160 Identities=10% Similarity=0.032 Sum_probs=108.3
Q ss_pred CeEEEEEcC-CCCEEEEEe-CCCeEEEEEccCceEEEec-CC----------CcEEEEEEccC-CCEEEEEEcCCcEEEE
Q 004298 23 QIKIAEWNP-EKDLLAMAT-EDSKILLHRFNWQRLWTIS-PG----------KSVTSLCWRPD-GKAIAVGLEDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP-~~~lLA~~s-~Dg~V~v~~l~~~~v~~~~-~~----------~~V~~l~wspD-G~~Lasg~~Dg~V~lw 88 (763)
....++++| +++++++.+ .++.|.+|+.+++.+..+. .+ ....+++++|+ |+++++...++.|++|
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 478899999 788888886 6899999999998888774 11 23899999998 7777777789999999
Q ss_pred EccCCeEEEEec--ccCCceeEEEeecCCCceeccCC-CCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFG-NIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~-~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
+.++|+.+..+. .+...+.+++|+| +..+.+.+. .+....+..+++|+.... .+.......... ... .
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~~~~~----~~~--p 294 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKPVRKH----FDM--P 294 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC--CEEEEECCSSSC----CSS--E
T ss_pred ECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcCCCCc----cCC--e
Confidence 999899998884 3556788999999 333322211 112225678888886542 111000000000 000 1
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
...+.+++++++++...+++|++|..
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeC
Confidence 12334567788898889999998863
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.40 E-value=7.2e-07 Score=96.44 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=72.4
Q ss_pred EEcCCCCEEEEE-----eCCCeEEEEEccCceEE-EecCCCcEEEEEEcc-CCCEEEEEEcC------CcEEEEEccCCe
Q 004298 28 EWNPEKDLLAMA-----TEDSKILLHRFNWQRLW-TISPGKSVTSLCWRP-DGKAIAVGLED------GTITLHDVENGK 94 (763)
Q Consensus 28 ~~sP~~~lLA~~-----s~Dg~V~v~~l~~~~v~-~~~~~~~V~~l~wsp-DG~~Lasg~~D------g~V~lwdve~g~ 94 (763)
.|+|+++.++.+ ..+..|++|++.+.+.. ...+...+..+.|+| ||+.|+..+.+ ..|.+||+.+++
T Consensus 148 ~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 148 DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 567777766654 35668999998544333 334556789999999 89988877654 368888887665
Q ss_pred EEEEeccc--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRSLKSH--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~l~~h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. .+..+ ...+..+.|+|+|+.++..+... ....+.+.+||...
T Consensus 228 ~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 228 VR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFK-GQTDRVIYKANPET 273 (396)
T ss_dssp CE-ESSCCCTTEEEEEEEECTTSSCEEEEEEET-TTCCEEEEEECTTT
T ss_pred ee-EeeccCCCccccceEECCCCCEEEEEecCC-CCccceEEEEECCC
Confidence 43 33333 23588899999999776653100 00114488898764
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.39 E-value=1.2e-05 Score=86.82 Aligned_cols=75 Identities=15% Similarity=0.056 Sum_probs=61.4
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEEc-cCceEEEec-------CCCcEEEEEEccCCCEEEEEEc--CCcE
Q 004298 26 IAEWNPEKDLLAMATE----------DSKILLHRF-NWQRLWTIS-------PGKSVTSLCWRPDGKAIAVGLE--DGTI 85 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~----------Dg~V~v~~l-~~~~v~~~~-------~~~~V~~l~wspDG~~Lasg~~--Dg~V 85 (763)
.++|+|+++++.+++. ++.|.+|+. +++.+..+. .+.....++++|||++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7899999999988863 678999998 566666654 2345678999999999999874 6899
Q ss_pred EEEEccCCeEEEE-ec
Q 004298 86 TLHDVENGKLLRS-LK 100 (763)
Q Consensus 86 ~lwdve~g~~~~~-l~ 100 (763)
.+||+.+++.+.. +.
T Consensus 134 ~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTA 149 (361)
T ss_dssp EEEETTTTEEEEEEGG
T ss_pred EEEECCCCcEEEEEec
Confidence 9999999999888 64
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.39 E-value=3.9e-06 Score=91.30 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=79.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
++|+ |..++| +++.|+++ .++.|++|++. -...... .+...+.++.+.+. .+|++..||.|.+||+.++...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc
Confidence 4677 999999 89999998 78999999982 2222222 24556888777664 3999999999999999988765
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
. +...|+|++|+|+| ++.|. .|+++++|+..
T Consensus 160 ~----~~~~Vs~v~WSpkG--~~vg~------~dg~i~~~~~~ 190 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ--LAVLL------KDRSFQSFAWR 190 (388)
T ss_dssp E----EEESEEEEEECSSE--EEEEE------TTSCEEEEEEE
T ss_pred c----ccCCceEEEEcCCc--eEEEE------cCCcEEEEcCC
Confidence 3 34689999999999 34454 68999999654
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.34 E-value=1.3e-05 Score=85.09 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCEEEEEeCC---------------------------CeEEEEEccCceE-EEecCCCcEEEEEEccCCCE
Q 004298 24 IKIAEWNPEKDLLAMATED---------------------------SKILLHRFNWQRL-WTISPGKSVTSLCWRPDGKA 75 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D---------------------------g~V~v~~l~~~~v-~~~~~~~~V~~l~wspDG~~ 75 (763)
+..++|+|+++.|+.++.+ ..|++|++.+... ..+... .+..++|+||| +
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~ 183 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-I 183 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-E
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-E
Confidence 7889999999999887642 5688899854443 444333 78899999999 7
Q ss_pred EEEEEcCC-------cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCC--cccCCceeecCCCCCCCCCC
Q 004298 76 IAVGLEDG-------TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIP--TYEDRTSRFFPPAPRIPQMP 146 (763)
Q Consensus 76 Lasg~~Dg-------~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~--~~~d~~i~~wd~~~~~~~l~ 146 (763)
++++..++ ...||.+.+++. ..+..+ ..+.. ++|+|+.++..+.... ......+.+|| ......+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~ 258 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGIL 258 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESS
T ss_pred EEEEecccccccccccccEEEeCCCce-EEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEecc
Confidence 77776542 445555555554 444444 44544 4999998776542110 01134566777 22111111
Q ss_pred CcccCCcccccCCcccccc-eecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 147 GLVSGDTGFTDDSEDSFRE-LANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 147 ~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
.++ ...+.. +.+ + ++ ++++++.+|.+++| ++
T Consensus 259 ---~~~-------~~~~~~~~~~--s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 259 ---DEV-------DRGVGQAKIK--D-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp ---TTC-------CSEEEEEEEE--T-TE-EEEEEEETTEEEEE-EE
T ss_pred ---ccC-------CcccCCccEE--c-Cc-EEEEEecCCcEEEE-Ec
Confidence 111 111221 233 3 55 88999999999999 76
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.33 E-value=1.7e-05 Score=80.83 Aligned_cols=152 Identities=5% Similarity=-0.055 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLA-MATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA-~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
....++++|++++++ +.+.++.|.+|+..+.....+. ....+.+++++|+|+++++.. ++.|.+||...+.. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 478899999999777 4467889999988554444433 235688999999999665555 88999999875543 333
Q ss_pred c-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 K-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
. .....+.++.+.+++...++.. .++.+..|+.......... ...+ .....+ ..++++++++
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~~~~~~~~~----~~~~-----~~p~~i--~~~~~g~l~v 165 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADR------GNNRVVKLAAGSKTQTVLP----FTGL-----NDPDGV--AVDNSGNVYV 165 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEG------GGTEEEEECTTCCSCEECC----CCSC-----CSCCCE--EECTTCCEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEEC------CCCEEEEEECCCceeEeec----cccC-----CCceeE--EEeCCCCEEE
Confidence 2 2235789999999998776654 5677888865432111000 0000 001112 2345667777
Q ss_pred EEcCCCcEEEEEcCc
Q 004298 179 SGDKDGSICFNIFGI 193 (763)
Q Consensus 179 sgs~DG~I~lw~~~~ 193 (763)
+...++.|..|+...
T Consensus 166 ~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 166 TDTDNNRVVKLEAES 180 (270)
T ss_dssp EEGGGTEEEEECTTT
T ss_pred EECCCCEEEEEecCC
Confidence 777788898887554
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.32 E-value=8.5e-06 Score=96.14 Aligned_cols=189 Identities=11% Similarity=0.002 Sum_probs=113.6
Q ss_pred EEEEEcCCCCEEEEEeCCCe-------------EEEEEcc-Cc----eEEEec-CCCcEEEEEEccCCCEEEEEEcCC--
Q 004298 25 KIAEWNPEKDLLAMATEDSK-------------ILLHRFN-WQ----RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG-- 83 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~-------------V~v~~l~-~~----~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg-- 83 (763)
..++|+|+|+.|+.++.|.. |++|++. ++ .++... +...+.++.|+|||++|++++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 67899999999999988765 9999993 33 333332 335788999999999999888766
Q ss_pred --cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC-c
Q 004298 84 --TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS-E 160 (763)
Q Consensus 84 --~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~-~ 160 (763)
.|++|+..+++. ..+..+...+....| +++.+++.+.. ...++.+..||........ ........ .
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~---~~~~~~l~~~d~~~~~~~~------~~~l~~~~~~ 319 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDE---GAPRQRVFEVDPAKPARAS------WKEIVPEDSS 319 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECT---TCTTCEEEEEBTTBCSGGG------CEEEECCCSS
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECC---CCCCCEEEEEeCCCCCccC------CeEEecCCCC
Confidence 677777655553 445555666677777 56664333321 1135778888875421000 00011000 1
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
..+..+.+ . +..++++...||..++|.++.- |.. ......+ . .+.+..++++||++.+++..
T Consensus 320 ~~l~~~~~--~-~~~lv~~~~~dg~~~l~~~~~~--g~~-~~~l~~~-----~-------~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 320 ASLLSVSI--V-GGHLSLEYLKDATSEVRVATLK--GKP-VRTVQLP-----G-------VGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp CEEEEEEE--E-TTEEEEEEEETTEEEEEEEETT--CCE-EEECCCS-----S-------SSEECCCBSCTTCSEEEEEE
T ss_pred CeEEEEEE--E-CCEEEEEEEECCEEEEEEEeCC--CCe-eEEecCC-----C-------CeEEEEeecCCCCCEEEEEE
Confidence 11222332 2 4568889999999999975421 110 0000000 0 12355678889998888776
Q ss_pred ec
Q 004298 241 SG 242 (763)
Q Consensus 241 ~d 242 (763)
++
T Consensus 382 ss 383 (695)
T 2bkl_A 382 TS 383 (695)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.29 E-value=6.7e-06 Score=97.78 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCc------------
Q 004298 23 QIKIAEWNPEKDLLAMATED-----SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGT------------ 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D-----g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~------------ 84 (763)
.+..++|||||++||.+..+ ..|++|++.+...... .++..+..++|+|| +.|+.+..|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 37789999999999987654 3699999955443332 12223357899999 99999887654
Q ss_pred --EEEEEccCCe----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 85 --ITLHDVENGK----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 85 --V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|++|++.++. .+.....+...+..+.|+|||++++..+..... ....+.+||...
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~ 303 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD-PVNTVHVARVTN 303 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC-SCCEEEEEEEET
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC-CcceEEEEECCC
Confidence 8999988765 333333333468899999999987765411000 134667776543
No 194
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.27 E-value=4.4e-05 Score=79.75 Aligned_cols=190 Identities=9% Similarity=0.022 Sum_probs=111.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEcC---------CcE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLED---------GTI 85 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~D---------g~V 85 (763)
+..+.+++++|++++++. . ++.|.+|+.....+..+. +...++.++++|||++.++...+ +..
T Consensus 53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence 355899999999996554 4 567999998544433321 22358899999999977655432 334
Q ss_pred EEEEcc-CCeEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC--cc
Q 004298 86 TLHDVE-NGKLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS--ED 161 (763)
Q Consensus 86 ~lwdve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~--~~ 161 (763)
.||.+. +++... +..+......++|+|+++.+. +.+ .++.+..|+..+....+. ....+.... ..
T Consensus 131 ~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~------~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 131 ALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDS------LSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQ 199 (297)
T ss_dssp EEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEG------GGTEEEEEEECTTTCCEE----EEEEEEECCGGGC
T ss_pred EEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecC------CCCcEEEEeccCCCCccc----CcEEEEECCCCCC
Confidence 566654 344433 323345568899999998654 333 467788886532111110 000010000 00
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEEcC-ceeeeeeeecccccccccCCCCCceeeeccceeeEEec-CCCCEEEEE
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNIFG-IFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS-KDLFHLTVL 239 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~-~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S-pDg~~Llv~ 239 (763)
.... ...++++++.++...++.|..|+.. ......+.++ ...+.+++|+ ||++.|++.
T Consensus 200 ~p~g--~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p------------------~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 200 IPDG--MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP------------------VDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEE--EEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS------------------SSBEEEEEEESGGGCEEEEE
T ss_pred CCCe--eEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC------------------CCCceEEEEeCCCCCEEEEE
Confidence 1111 2234566777777777788888754 2233333221 1246789998 899999998
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
+...
T Consensus 260 ~~~~ 263 (297)
T 3g4e_A 260 CARD 263 (297)
T ss_dssp EBCT
T ss_pred cCCc
Confidence 7643
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.21 E-value=4.3e-05 Score=81.21 Aligned_cols=186 Identities=8% Similarity=-0.070 Sum_probs=118.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+++.....+.+. .+.+.++...++.|.+++. +++.+..+..+.....++++|+|+..++...++.|.+||..+++...
T Consensus 41 ~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 41 KLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 445556778875 4556666667899999999 67777888777889999999999554444489999999999999888
Q ss_pred EecccC-----CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 98 SLKSHT-----VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 98 ~l~~h~-----~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
.+.... .....+++ .+++..++..+ .++.+.++|..+.. ........ ... .....++
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-----~~~~v~viD~~t~~--~~~~i~~g--------~~p--~~i~~~~ 181 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-----YQNRILKIDTETDK--VVDELTIG--------IQP--TSLVMDK 181 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECT-----TCCEEEEEETTTTE--EEEEEECS--------SCB--CCCEECT
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCC-----CCCEEEEEECCCCe--EEEEEEcC--------CCc--cceEEcC
Confidence 776433 15567777 44554444310 37788899876421 00000000 000 1122346
Q ss_pred CeeEEEEEcCC----------CcEEEEEcCceeee-eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 173 RFSILCSGDKD----------GSICFNIFGIFPIG-KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 173 ~~~~L~sgs~D----------G~I~lw~~~~~~ig-~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
++++++++..+ +.|.+++.....+. .+.+.. + .....++++||++.++++.
T Consensus 182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-------g----------~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-------G----------DWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-------T----------CCCEEEEECTTSCEEEEES
T ss_pred CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-------C----------CCceeEEEecCCCEEEEEc
Confidence 67777776654 78888876544332 222110 0 1245789999999998864
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.20 E-value=1.2e-05 Score=94.95 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCCCEEEEEeCC-Ce--EEEEEc--c-Cc--eEEEec---CC--CcEEEEEEccCCCEEEEEEcCC-----cEEEEEccC
Q 004298 31 PEKDLLAMATED-SK--ILLHRF--N-WQ--RLWTIS---PG--KSVTSLCWRPDGKAIAVGLEDG-----TITLHDVEN 92 (763)
Q Consensus 31 P~~~lLA~~s~D-g~--V~v~~l--~-~~--~v~~~~---~~--~~V~~l~wspDG~~Lasg~~Dg-----~V~lwdve~ 92 (763)
|+|+.++....+ +. -.+|+. . ++ .+.... .+ ..+.+++|||||++||.+..++ .|++||+++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 899888865543 22 245555 2 22 222211 12 2578999999999999887644 899999999
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+.+..... ...+..++|+|||+.++.++
T Consensus 161 g~~~~~~~~-~~~~~~~~wspDg~~l~~~~ 189 (710)
T 2xdw_A 161 AKELPDVLE-RVKFSCMAWTHDGKGMFYNA 189 (710)
T ss_dssp TEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred CCCCccccc-CcccceEEEEeCCCEEEEEE
Confidence 988764322 23477899999999887765
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.10 E-value=8e-05 Score=79.10 Aligned_cols=190 Identities=9% Similarity=-0.037 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC------cEEEEEEccCCCEEEEEE-cCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK------SVTSLCWRPDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~------~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
.....++++|++.+.++...++.|.+|+. +++.+..+..+. ....+++ .+++.+++.. .++.|.++|.+++
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence 34788999999865555547899999999 455555666554 6777888 4444444444 4899999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCC----cccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIP----TYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~----~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+.+..+.. ......+.++++|++.+++..+.. ....+.+.++|..... +........ ... ....+
T Consensus 163 ~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~------g~~--p~~la 231 (328)
T 3dsm_A 163 KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKL------GDW--PSEVQ 231 (328)
T ss_dssp EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCT------TCC--CEEEE
T ss_pred eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCC------CCC--ceeEE
Confidence 99888865 345678899999987776641100 0002678888765421 000000000 000 11223
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
++++++.|.++.. .|.+++.....+.... ....+ ......++++|++..++++.
T Consensus 232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~-------~~~~~--------~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 232 LNGTRDTLYWINN--DIWRMPVEADRVPVRP-------FLEFR--------DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ECTTSCEEEEESS--SEEEEETTCSSCCSSC-------SBCCC--------SSCEEEEEECTTTCCEEEEE
T ss_pred EecCCCEEEEEcc--EEEEEECCCCceeeee-------eecCC--------CCceEEEEEcCCCCeEEEEc
Confidence 4455556665544 7777664432221100 00000 12356789999888888875
No 198
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.08 E-value=0.00025 Score=75.15 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=106.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---C---CCcEEEEEEccCCCEEEEEEc------CCcEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---P---GKSVTSLCWRPDGKAIAVGLE------DGTITLH 88 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~---~~~V~~l~wspDG~~Lasg~~------Dg~V~lw 88 (763)
+..|.+++|+|++++++.. .+ .|.+|+.....+..+. . ...+.+++++|+|++.++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 3459999999999887754 44 4888888443333322 1 236899999999997665543 2445555
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceec-cCCCCCcccCCceeecCCCCCCC-CCCCcccCCccccc--CCccccc
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN-DFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTD--DSEDSFR 164 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s-~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~--~~~~~~~ 164 (763)
+ +++... +..+......++|+|+++.+.. .+ .++.+..|+...... .+.. ...+.. .......
T Consensus 167 ~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~------~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~ 233 (326)
T 2ghs_A 167 A--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT------KVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMD 233 (326)
T ss_dssp E--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET------TTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEE
T ss_pred e--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC------CCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCC
Confidence 5 565443 3233345788999999975543 33 467788887641101 1100 000000 0000111
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEec-CCCCEEEEEeecC
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS-KDLFHLTVLCSGQ 243 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S-pDg~~Llv~~~d~ 243 (763)
. ...+.++++.++...++.|..|+........+.+ -...+.+++|+ +|++.|++.+..+
T Consensus 234 g--i~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~------------------~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 234 G--SVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV------------------PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp E--EEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC------------------SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred e--eEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC------------------CCCCcEEEEEecCCCCEEEEEecCC
Confidence 1 2234556666666566777777643222222211 11247789998 8999998876643
No 199
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.05 E-value=1.8e-05 Score=85.44 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=75.3
Q ss_pred EEEEcCCCCEEEEEeC-----------CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 26 IAEWNPEKDLLAMATE-----------DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~-----------Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++++|+++.+.++.. .+.|.+|++ +++.+..+.-+. +.+++|+|||++|++++. ++|.+||.+++
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3789999887776543 358999999 677777777666 999999999999999887 99999999999
Q ss_pred --eEEEEecccCCceeEEEeecCCC
Q 004298 94 --KLLRSLKSHTVAVVCLNWEEDAQ 116 (763)
Q Consensus 94 --~~~~~l~~h~~~V~~l~ws~~~~ 116 (763)
+.+.++..+......+.++|+|.
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 99999876777888999999885
No 200
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.05 E-value=4e-05 Score=90.39 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCc------------
Q 004298 23 QIKIAEWNPEKDLLAMATE-----DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGT------------ 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-----Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~------------ 84 (763)
.+..++|||||+++|.+.. ...|+++++ +++.+-...++....+++|+ ||+.|+.+..++.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 4788999999999996432 247999999 45443332222223578999 9999999987754
Q ss_pred -EEEEEccCCe----EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 85 -ITLHDVENGK----LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 85 -V~lwdve~g~----~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|++|++.++. .+..... |...+..+.|+|+|++++..... ......+.++|...
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN--STSGNRLYVKDLSQ 268 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES--SSSCCEEEEEETTS
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc--CCCCcEEEEEECCC
Confidence 9999988754 3433334 45567889999999977432200 01235778887654
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.04 E-value=0.00037 Score=71.57 Aligned_cols=151 Identities=8% Similarity=-0.013 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR- 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~- 97 (763)
..+.+++++|++.+.++...++.|.+|+.. ..+..+. +...+.+++++|+|++.++...++.|..||.. ++...
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 358999999999988776668899999988 4443332 45679999999999988887778999999976 44322
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+......+.++.+.+++...++.. .++.+..|+.......... ... ..... ....++++++.
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~d~~g~~~~~~~--~~~-------~~~~~--~i~~~~~g~l~ 155 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEM------NGNRIGRITDDGKIREYEL--PNK-------GSYPS--FITLGSDNALW 155 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTCCEEEEEC--SST-------TCCEE--EEEECTTSCEE
T ss_pred eCCCcCCCceeeEECCCCCEEEEec------CCceEEEECCCCCEEEecC--CCC-------CCCCc--eEEEcCCCCEE
Confidence 2222456789999999998777654 4667777876321110000 000 00111 12234566777
Q ss_pred EEEcCCCcEEEEEc
Q 004298 178 CSGDKDGSICFNIF 191 (763)
Q Consensus 178 ~sgs~DG~I~lw~~ 191 (763)
++...++.|..++.
T Consensus 156 v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 156 FTENQNNAIGRITE 169 (299)
T ss_dssp EEETTTTEEEEECT
T ss_pred EEeCCCCEEEEEcC
Confidence 77766788887764
No 202
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.04 E-value=7.7e-05 Score=78.17 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=108.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--C---CCcEEEEEEccCCCEEEE----EEc-----------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--P---GKSVTSLCWRPDGKAIAV----GLE----------- 81 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~---~~~V~~l~wspDG~~Las----g~~----------- 81 (763)
..+..++|+|+|+++++...++.|.+|+.+++...-.. . ...+.+++++|||++.++ |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 34789999999998776666688999998755322221 1 134678999999998886 332
Q ss_pred --CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC
Q 004298 82 --DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 82 --Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~ 159 (763)
.+.|..||..+|+..... .......++|+|+++.+..+.........+.+..|+..... + .....+....
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l----~~~~~~~~~~ 237 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--L----HDRRHFASVP 237 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--E----EEEEEEECCS
T ss_pred cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--c----cCCeEEEECC
Confidence 256777887677654433 34567889999999865544310000002567777654311 0 0000000000
Q ss_pred cccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEE
Q 004298 160 EDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
......+ ..++++++.+ ++.+| |.+|+.+....+.+.... .+..++|++|++.|++.
T Consensus 238 ~~~pdgi--~~d~~G~lwv-~~~~g-v~~~~~~g~~~~~~~~~~-------------------~~~~~~f~~d~~~L~it 294 (305)
T 3dr2_A 238 DGLPDGF--CVDRGGWLWS-SSGTG-VCVFDSDGQLLGHIPTPG-------------------TASNCTFDQAQQRLFIT 294 (305)
T ss_dssp SSCCCSE--EECTTSCEEE-CCSSE-EEEECTTSCEEEEEECSS-------------------CCCEEEECTTSCEEEEE
T ss_pred CCCCCeE--EECCCCCEEE-ecCCc-EEEECCCCCEEEEEECCC-------------------ceeEEEEeCCCCEEEEE
Confidence 0001112 2345566444 44444 777765444444443211 24578999999999988
Q ss_pred eec
Q 004298 240 CSG 242 (763)
Q Consensus 240 ~~d 242 (763)
+.+
T Consensus 295 ~~~ 297 (305)
T 3dr2_A 295 GGP 297 (305)
T ss_dssp ETT
T ss_pred cCC
Confidence 754
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.00 E-value=0.00015 Score=75.58 Aligned_cols=199 Identities=6% Similarity=-0.037 Sum_probs=115.7
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEe-c------CCCcEEEEEEccCCCEEEEEEcC-----------
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTI-S------PGKSVTSLCWRPDGKAIAVGLED----------- 82 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~-~------~~~~V~~l~wspDG~~Lasg~~D----------- 82 (763)
..+..++++|+ ++++++.. .+.|.+|+.++ ++..+ . +...+.+++++|+|++.++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETTS-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCCC-CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 45889999999 77665444 45788899884 44443 2 12358899999999988777655
Q ss_pred ----CcEEEEEccCCeEEEEecccCCceeEEEee----cCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 83 ----GTITLHDVENGKLLRSLKSHTVAVVCLNWE----EDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 83 ----g~V~lwdve~g~~~~~l~~h~~~V~~l~ws----~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
+.|..|+.. ++..... .+......+.|+ ++++.+ ++.. .++.+..|+.... ..+.. .....
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~------~~~~i~~~~~~~~-g~~~~-~~~~~ 218 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGP-AKIEN-KKVWG 218 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEET-TEEEE-EEEEE
T ss_pred cCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEEC------CCCeEEEEECCCC-Ccccc-ceEEE
Confidence 567777765 6554333 333456889999 998644 4433 4677888875410 00000 00000
Q ss_pred ccccCCc-ccccceecccCCCeeEEEEEcCCCcEEEEEcC-ceeeeeeeecccccccccCCCCCceeeeccceeeEEecC
Q 004298 154 GFTDDSE-DSFRELANSSHQRFSILCSGDKDGSICFNIFG-IFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~-~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
.+. ... .... ....+++++++++...++.|..|+.. ......+.. ....+.++++++
T Consensus 219 ~~~-~~~~~~p~--~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~------------------~~~~~~~i~~~~ 277 (314)
T 1pjx_A 219 HIP-GTHEGGAD--GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC------------------PFEKPSNLHFKP 277 (314)
T ss_dssp ECC-CCSSCEEE--EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC------------------SSSCEEEEEECT
T ss_pred ECC-CCCCCCCC--ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC------------------CCCCceeEEECC
Confidence 000 000 0111 12344667778777778888888754 111122211 112467899999
Q ss_pred CCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 232 DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 232 Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
||+.|+++..+. .+|..+.++.
T Consensus 278 dg~~l~v~~~~~-----------~~l~~~~~~~ 299 (314)
T 1pjx_A 278 QTKTIFVTEHEN-----------NAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTT-----------TEEEEEECSS
T ss_pred CCCEEEEEeCCC-----------CeEEEEeCCC
Confidence 999888876432 3566666554
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.99 E-value=0.00077 Score=69.16 Aligned_cols=152 Identities=9% Similarity=0.000 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS- 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~- 98 (763)
..+..++++|++.+.++...++.|..|+.+++. .+.+. ....+.++++.|+|++.++...++.|..||. +++....
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 458899999999988877778899999987543 22222 4567899999999998888778899999998 6665433
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
...+...+.++.+.+++...++.. .++.+..|+.......... ... .... .....++++++.+
T Consensus 136 ~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~--~~~-------~~~~--~~i~~~~~g~l~v 198 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNALWFTEN------QNNAIGRITESGDITEFKI--PTP-------ASGP--VGITKGNDDALWF 198 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTCCEEEEEC--SST-------TCCE--EEEEECTTSSEEE
T ss_pred CCCCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcCCCcEEEeeC--CCC-------CCcc--eeEEECCCCCEEE
Confidence 233446789999999998776654 4567777776221111000 000 0011 1122345566777
Q ss_pred EEcCCCcEEEEEc
Q 004298 179 SGDKDGSICFNIF 191 (763)
Q Consensus 179 sgs~DG~I~lw~~ 191 (763)
+...++.|..|+.
T Consensus 199 ~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 199 VEIIGNKIGRITT 211 (299)
T ss_dssp EETTTTEEEEECT
T ss_pred EccCCceEEEECC
Confidence 7666788888764
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.88 E-value=0.00053 Score=71.39 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=70.7
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
.....|+|+. .++++...++.|..|+..+.....+.....+.+++|+|||+++++ . ++.|.+||.++++........
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecC
Confidence 4578999965 566666778899999996665555556678999999999995554 4 678999999888764333221
Q ss_pred ----CCceeEEEeecCCCceecc
Q 004298 103 ----TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 103 ----~~~V~~l~ws~~~~~l~s~ 121 (763)
...+..+.++|+|++.++.
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEec
Confidence 2357889999999876654
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.88 E-value=0.00019 Score=78.82 Aligned_cols=157 Identities=10% Similarity=-0.091 Sum_probs=100.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC--cEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG--TITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg--~V~lwdve~g~~~~~l 99 (763)
....++|+|+++++++...++.|++|+..+..+..+. ...... ++|+|+|+.|+++..++ .|..|+..++.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 4788999999998888888899999999766665554 333334 99999999999988766 7899998766554444
Q ss_pred ----cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce-ecccCC-
Q 004298 100 ----KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL-ANSSHQ- 172 (763)
Q Consensus 100 ----~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~-~~~~~~- 172 (763)
..+...+.+++++| ++.+.+ +. .++.+..|+........... .+... ....... ...+++
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv-~d------~~~~I~~~d~~~~~~~~~~~-~~~~g-----~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYF-VD------SNKNFGRFNVKTQEVTLIKQ-LELSG-----SLGTNPGPYLIYYFV 277 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEE-EC------TTCEEEEEETTTCCEEEEEE-CCCCS-----CCCCSSCCEEEEETT
T ss_pred eeccchhcCCcEEEEEeCCCCeEEE-EE------CCCcEEEEECCCCCEEEEec-ccccC-----CCCCCccccEEEeCC
Confidence 22456788999999 455444 43 46778888765421110000 00000 0000101 222344
Q ss_pred CeeEEEEEcCCCcEEEEEcCc
Q 004298 173 RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~ 193 (763)
++.++++...+++|+.|+.+.
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTC
T ss_pred CCEEEEEeCCCCEEEEEecCC
Confidence 467777777888888887553
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.87 E-value=7.1e-05 Score=88.91 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=60.8
Q ss_pred cCCCCEEEEEeCCCe---EEEEEc--c---CceEEEe------cCCC--cEEEEEEccCCCEEEEEEcC-----CcEEEE
Q 004298 30 NPEKDLLAMATEDSK---ILLHRF--N---WQRLWTI------SPGK--SVTSLCWRPDGKAIAVGLED-----GTITLH 88 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~---V~v~~l--~---~~~v~~~------~~~~--~V~~l~wspDG~~Lasg~~D-----g~V~lw 88 (763)
+|+|+.++....++. -.+|+. . +.....+ ..+. .+.+++|||||++||.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998887665432 556665 2 3322221 1222 67899999999999988754 359999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+++|+.+... .+...+..++|+|| +.++.++
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~ 226 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSR 226 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEE
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEE
Confidence 99999876532 22223467899999 8777655
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.85 E-value=0.0014 Score=71.04 Aligned_cols=75 Identities=12% Similarity=-0.000 Sum_probs=59.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEecC--------CCcEEEEEEccCCCEEEEEEc--CCc
Q 004298 26 IAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTISP--------GKSVTSLCWRPDGKAIAVGLE--DGT 84 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~~--------~~~V~~l~wspDG~~Lasg~~--Dg~ 84 (763)
.+++||+++.+.++. .++.|.+|+. +.+.+..+.- +.....++|+|||++|.++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 799999999988876 3678999999 5555555542 234568999999999999874 588
Q ss_pred EEEEEccCCeEEEE-ecc
Q 004298 85 ITLHDVENGKLLRS-LKS 101 (763)
Q Consensus 85 V~lwdve~g~~~~~-l~~ 101 (763)
|.++| ++++.+.. +..
T Consensus 150 v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred EEEEE-CCCCEEeEEcCC
Confidence 99999 99999888 643
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.75 E-value=0.00052 Score=71.31 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=78.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------------CeEEEEEccCceEEEecCCCcEEEEEEc----cCCCEEEEEE-cC
Q 004298 23 QIKIAEWNPEKDLLAMATED---------------SKILLHRFNWQRLWTISPGKSVTSLCWR----PDGKAIAVGL-ED 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---------------g~V~v~~l~~~~v~~~~~~~~V~~l~ws----pDG~~Lasg~-~D 82 (763)
.+..++++|++++.++...+ +.|..++.+++......+......++|+ |||+.+.++. .+
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~ 197 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT 197 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence 47899999999988776655 4566666564433323333457889999 9998766664 68
Q ss_pred CcEEEEEcc-CCeE-----EEEecccC-CceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 83 GTITLHDVE-NGKL-----LRSLKSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 83 g~V~lwdve-~g~~-----~~~l~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+.|.+|+.. +++. ...+..+. ..+..++++++|...++.. .++.+..|+..
T Consensus 198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~------~~~~i~~~d~~ 255 (314)
T 1pjx_A 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW------GSSHIEVFGPD 255 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE------TTTEEEEECTT
T ss_pred CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc------CCCEEEEEcCC
Confidence 999999986 5652 33344443 5688899999998777654 46788888876
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.73 E-value=0.00084 Score=73.83 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=61.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEecC--------CCcEEEEEEccCCCEEEEEEc--CCc
Q 004298 26 IAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTISP--------GKSVTSLCWRPDGKAIAVGLE--DGT 84 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~~--------~~~V~~l~wspDG~~Lasg~~--Dg~ 84 (763)
.++++|+++.+.++. .++.|.+++. +.+.+..+.- +.....+.++|||+++.++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 699999999887776 3678999999 6666666642 234567899999999999874 688
Q ss_pred EEEEEccCCeEEEEecc
Q 004298 85 ITLHDVENGKLLRSLKS 101 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~ 101 (763)
|.+.|+.+++.+.++..
T Consensus 202 VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCeEEEEEEc
Confidence 99999999999988864
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.71 E-value=0.00077 Score=70.40 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=70.5
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
.....|+|+++ ++++...++.|..|+.+++......+...+.+++|+|+|+++++...++.|..|+.+ |+........
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence 67889999998 667777889999999866532222355678999999999977776677899999976 6543222111
Q ss_pred ----CCceeEEEeecCCCceec
Q 004298 103 ----TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 103 ----~~~V~~l~ws~~~~~l~s 120 (763)
...+..+.+.++|...++
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEE
T ss_pred CCCccCCCCCEEECCCCCEEEe
Confidence 135678999999987775
No 212
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.70 E-value=0.00014 Score=82.42 Aligned_cols=200 Identities=12% Similarity=-0.021 Sum_probs=127.9
Q ss_pred CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE
Q 004298 21 ASQIKIAEW-N-PEKDLLAMAT------------------EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 21 ~~~V~~l~~-s-P~~~lLA~~s------------------~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg 79 (763)
......+++ + |++.++.+++ .++.+.+.+. +.+.+|.+.-++....++.+|||+++++.
T Consensus 133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFST 212 (595)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEE
T ss_pred CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEE
Confidence 345788898 5 9999988874 2357888898 66778888754466778999999999998
Q ss_pred EcCC--------------------------------------cEEEEEccC--CeE-EEEecccCCceeEEEeecCCCce
Q 004298 80 LEDG--------------------------------------TITLHDVEN--GKL-LRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 80 ~~Dg--------------------------------------~V~lwdve~--g~~-~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
+.+. .|.+.|..+ ++. +..+.. .....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEE
Confidence 8543 478888877 555 556643 3466789999999977
Q ss_pred eccCCCCCcccCCceeecCCCCCC----CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPRI----PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI- 193 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~~----~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~- 193 (763)
..++ ..+.++.++|..+.. .++.. ..................++++++..++..-|++|..|+++.
T Consensus 292 ~V~~-----~~s~~VsVid~~~~~~~~~~~l~~----~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a 362 (595)
T 1fwx_A 292 CVAG-----KLSPTVTVLDVTRFDAVFYENADP----RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 362 (595)
T ss_dssp EEEC-----TTSSBEEEEEGGGHHHHHHSCCCG----GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEeC-----CCCCeEEEEECcccccccccccCc----ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence 6654 257778888776310 00100 000000001111223344667777778888999999998765
Q ss_pred ----------eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 194 ----------FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 194 ----------~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+.+++++-.+.+..+ -..+.++|||++|+++....
T Consensus 363 ~~~~~g~~~~~vi~kidV~yqpGh~~~-------------~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 363 IRAYAGEKVDPIKDKLDVHYQPGHLKT-------------VMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp HHHHHTCSCCCEEEEEECSSCEEEEEE-------------TTTTSTTCCSSEEEEEESCC
T ss_pred hhhhcccccceeEEEeeccccccccee-------------ccceEeCCCCCEEEEcCCCC
Confidence 23445554432222111 11245799999999987643
No 213
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.67 E-value=0.0067 Score=62.12 Aligned_cols=206 Identities=8% Similarity=-0.108 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEEc-cCceEEEecCCC--cEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATE--DSKILLHRF-NWQRLWTISPGK--SVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~--Dg~V~v~~l-~~~~v~~~~~~~--~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~ 97 (763)
...++|+|++.+.++.+. ++.|.++++ +++.+..+.-+. ....+++. |+.| ++...++.|.++|..+++.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999998766665543 578999999 677666665333 33445554 5455 555578999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCc-ccccCCcccccceecccCCCee
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDT-GFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
++..... .....++++..+..+. .++++.++|..+.. ...... +.. ... .....+.+. ++.
T Consensus 101 ~i~~g~~--~g~glt~Dg~~l~vs~------gs~~l~viD~~t~~--v~~~I~Vg~~~~p~----~~~nele~~---dg~ 163 (266)
T 2iwa_A 101 NFTHQMK--DGWGLATDGKILYGSD------GTSILYEIDPHTFK--LIKKHNVKYNGHRV----IRLNELEYI---NGE 163 (266)
T ss_dssp EEECCSS--SCCEEEECSSSEEEEC------SSSEEEEECTTTCC--EEEEEECEETTEEC----CCEEEEEEE---TTE
T ss_pred EEECCCC--CeEEEEECCCEEEEEC------CCCeEEEEECCCCc--EEEEEEECCCCccc----ccceeEEEE---CCE
Confidence 9864301 1234556777665554 46788999876521 000000 000 000 001122221 234
Q ss_pred EEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCC
Q 004298 176 ILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGM 254 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~ 254 (763)
+.+....++.|.+-+.... .++.+++.............. ......++++|+++.+++.+...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~-----~~v~nGIa~~~~~~~lfVTgk~~----------- 227 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD-----IDVLNGIAWDQENKRIFVTGKLW----------- 227 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT-----CCCEEEEEEETTTTEEEEEETTC-----------
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccc-----cCceEEEEEcCCCCEEEEECCCC-----------
Confidence 5555555667776665443 345555432110000000000 01235799999999999987532
Q ss_pred CcEEEEEeec
Q 004298 255 HGLHCLVLDT 264 (763)
Q Consensus 255 ~~l~~~~ld~ 264 (763)
+.++.+.+..
T Consensus 228 ~~v~~i~l~~ 237 (266)
T 2iwa_A 228 PKLFEIKLHL 237 (266)
T ss_dssp SEEEEEEEEE
T ss_pred CeEEEEEEec
Confidence 3666666554
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.66 E-value=0.0037 Score=63.94 Aligned_cols=150 Identities=9% Similarity=-0.061 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE-E
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR-S 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~-~ 98 (763)
.+.+++++|++++.++...++.|.+|+.+ .++..+. ....+.++++.++|++.++...++.|..+|.. ++... .
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 58899999999988877778999999988 3343332 23578999999999987777778999999987 66532 2
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+......+.++.+.+++...++.. .++.+..++.......... ... .... .....++++++.+
T Consensus 99 ~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~--~~~-------~~~~--~~i~~d~~g~l~v 161 (300)
T 2qc5_A 99 LPQPDSGPYGITEGLNGDIWFTQL------NGDRIGKLTADGTIYEYDL--PNK-------GSYP--AFITLGSDNALWF 161 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEET------TTTEEEEECTTSCEEEEEC--SST-------TCCE--EEEEECTTSSEEE
T ss_pred CCCCCCCCccceECCCCCEEEEcc------CCCeEEEECCCCCEEEccC--CCC-------CCCc--eeEEECCCCCEEE
Confidence 222346789999999988776654 4566777765422110000 000 0011 1122345566666
Q ss_pred EEcCCCcEEEEEc
Q 004298 179 SGDKDGSICFNIF 191 (763)
Q Consensus 179 sgs~DG~I~lw~~ 191 (763)
+...++.|..++.
T Consensus 162 ~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 162 TENQNNSIGRITN 174 (300)
T ss_dssp EETTTTEEEEECT
T ss_pred EecCCCeEEEECC
Confidence 6666777777764
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.66 E-value=0.0019 Score=70.86 Aligned_cols=158 Identities=8% Similarity=-0.067 Sum_probs=93.5
Q ss_pred EEEcCCCCEEEEEeCCC--eEEEEEccCc-eEEEe----c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 27 AEWNPEKDLLAMATEDS--KILLHRFNWQ-RLWTI----S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg--~V~v~~l~~~-~v~~~----~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
++|+|+++.++++..++ .|.+++..+. ....+ . ....+.+++++|++..|.++..++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999888888765 7888887433 22233 2 456688999999555555577789999999987764322
Q ss_pred ----ecccCCce--eEEEeecC-CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC--Ccccc-cceec
Q 004298 99 ----LKSHTVAV--VCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD--SEDSF-RELAN 168 (763)
Q Consensus 99 ----l~~h~~~V--~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~--~~~~~-~~~~~ 168 (763)
..++...- ..++|+|+ +.+.++.. ..+.|..|+.......+.+.. +..++.++ ....+ .....
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~------~~~~I~~~~~~g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gi 328 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ------NLSSVYKITPDGECEWFCGSA-TQKTVQDGLREEALFAQPNGM 328 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEET------TTTEEEEECTTCCEEEEEECT-TCCSCBCEEGGGCBCSSEEEE
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeC------CCCEEEEEecCCCEEEEEeCC-CCCCcCCCcccccEeCCCeEE
Confidence 22222222 39999995 55555554 567788887654311111000 00011100 00001 01223
Q ss_pred ccCCCeeEEEEEc-CCCcEEEEEc
Q 004298 169 SSHQRFSILCSGD-KDGSICFNIF 191 (763)
Q Consensus 169 ~~~~~~~~L~sgs-~DG~I~lw~~ 191 (763)
+.+++++++++-+ .+++|+.|+.
T Consensus 329 a~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 329 TVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp EECTTCCEEEEETTTTCEEEEEET
T ss_pred EEeCCCCEEEEeCCCCCEEEEEEC
Confidence 3456677777777 7888888873
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.66 E-value=0.00098 Score=70.52 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=70.3
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
.....|+|++ .++++...++.|..|+..++.+..+.....+.+++|+|||+++++. .+ .|.+||.++++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC
Confidence 4678999975 5566666788999999976655555555789999999999877754 44 499999988876433221
Q ss_pred --c-CCceeEEEeecCCCceecc
Q 004298 102 --H-TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 102 --h-~~~V~~l~ws~~~~~l~s~ 121 (763)
. ...+..+.++|+|++.++.
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~ 151 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGT 151 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEEe
Confidence 1 2368899999999876654
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.62 E-value=0.0057 Score=62.54 Aligned_cols=152 Identities=9% Similarity=-0.014 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS- 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~- 98 (763)
..+..++++|++.+.++...++.|..|+.+++.. +... .+..+.++++.|+|++.++...++.|..+|.. ++....
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 4588999999999888776688899999875432 2222 34678999999999988877778899999987 665532
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+......+.++.+.+++...++.. .++.+..++........ ..... .... .....++++++.+
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~~g~~~~~----~~~~~-----~~~~--~~i~~d~~g~l~v 203 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTEN------QNNSIGRITNTGKLEEY----PLPTN-----AAAP--VGITSGNDGALWF 203 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEET------TTTEEEEECTTCCEEEE----ECSST-----TCCE--EEEEECTTSSEEE
T ss_pred CCCCCCCceeEEECCCCCEEEEec------CCCeEEEECCCCcEEEe----eCCCC-----CCCc--ceEEECCCCCEEE
Confidence 333346789999999998666554 45667777763211100 00000 0011 1122345566777
Q ss_pred EEcCCCcEEEEEc
Q 004298 179 SGDKDGSICFNIF 191 (763)
Q Consensus 179 sgs~DG~I~lw~~ 191 (763)
+....+.|..++.
T Consensus 204 ~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 204 VEIMGNKIGRITT 216 (300)
T ss_dssp EETTTTEEEEECT
T ss_pred EccCCCEEEEEcC
Confidence 6666777877764
No 218
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.60 E-value=1.8e-05 Score=85.79 Aligned_cols=138 Identities=14% Similarity=0.021 Sum_probs=76.1
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-cee-E
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVV-C 108 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~-~ 108 (763)
+++.+++++.||.|..|+. +|+.+|.+.. ..+.+..+.++|+.+++++.||.|+.||.++|+.+.++..+.. .+. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 5788999999999999997 8999999987 5566666677888888889999999999999988766643311 110 0
Q ss_pred EEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEE
Q 004298 109 LNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF 188 (763)
Q Consensus 109 l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~l 188 (763)
.... .+..+++++ .++.+..||..+...... ...... .. ..+....+++++.||.|+.
T Consensus 87 p~~~-~~~~v~~g~------~dg~v~a~D~~tG~~~w~--~~~~~~-----------~~--~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 87 PCRS-SDGILYMGK------KQDIWYVIDLLTGEKQQT--LSSAFA-----------DS--LSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp SCC------CCCCE------EEEEEEEECCC-------------------------------------EEEEEEEEEEEC
T ss_pred ceEe-cCCEEEEEe------CCCEEEEEECCCCcEEEE--ecCCCc-----------cc--ccccCCEEEEEecCCEEEE
Confidence 0111 233445554 688899999875211100 000000 00 1125567888888999988
Q ss_pred EEcC
Q 004298 189 NIFG 192 (763)
Q Consensus 189 w~~~ 192 (763)
|+..
T Consensus 145 ~d~~ 148 (369)
T 2hz6_A 145 YDTK 148 (369)
T ss_dssp CCSS
T ss_pred EECC
Confidence 8743
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.51 E-value=0.0021 Score=68.40 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEec--------CCCcEEEEEEccCCCEEEEEEc-----CCcEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT--EDSKILLHRFNWQRLWTIS--------PGKSVTSLCWRPDGKAIAVGLE-----DGTITL 87 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~~~v~~~~--------~~~~V~~l~wspDG~~Lasg~~-----Dg~V~l 87 (763)
.+..++++|+|+++++.. .++.+.||.++..++..+. +-..+.+++++|+|++.++-.. ++.|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 478899999999988864 2342455555322344332 2246899999999987776554 689999
Q ss_pred EEccCCeEEEEeccc------CCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLKSH------TVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~~h------~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
||..+++.++.+... ...+..+++++++.. .++... ...++.+.+||...
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~---~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA---PDDKAALIRVDLQT 154 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC---SGGGCEEEEEETTT
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc---cCCCCeEEEEECCC
Confidence 999999988777532 235688999976433 333210 00356778887653
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.41 E-value=0.0098 Score=64.26 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEec--C------CCcEEEEEEccCCCEEEEEEc--CCcE
Q 004298 27 AEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTIS--P------GKSVTSLCWRPDGKAIAVGLE--DGTI 85 (763)
Q Consensus 27 l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~--~------~~~V~~l~wspDG~~Lasg~~--Dg~V 85 (763)
++++|+|+.+.+++ .++.|.+|+. +.+.+..+. . +.....++++|||+++.++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999887765 3678999999 566666654 2 224667999999999998874 6899
Q ss_pred EEEEccCCeEEEEecc
Q 004298 86 TLHDVENGKLLRSLKS 101 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~ 101 (763)
.++|+.+++.+.++..
T Consensus 163 sVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCcEEEEEEC
Confidence 9999999999998854
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.40 E-value=0.0025 Score=74.93 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=71.3
Q ss_pred EEEEEcCCCCEEEEEeCCC-------------eEEEEEc-cCc----eEEEecC--CCcEEEEEEccCCCEEEEEEc---
Q 004298 25 KIAEWNPEKDLLAMATEDS-------------KILLHRF-NWQ----RLWTISP--GKSVTSLCWRPDGKAIAVGLE--- 81 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg-------------~V~v~~l-~~~----~v~~~~~--~~~V~~l~wspDG~~Lasg~~--- 81 (763)
..++|+ |++.|+.++.+. .|++|++ +++ .++.... ...+.++.|+|||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 457899 999999988774 3999998 332 3443322 345788999999998876553
Q ss_pred -CCcEEEEEccCCe-EEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCC
Q 004298 82 -DGTITLHDVENGK-LLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 82 -Dg~V~lwdve~g~-~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++.|+++|+.++. ....+..+....... |++++..+ +.+..+ .....+..++...
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~---~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD---APNRRLVTVDAAN 314 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT---CTTCEEEEEETTS
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC---CCCCEEEEEeCCC
Confidence 3589999998763 345565666655555 66666544 333210 1234566666654
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.39 E-value=0.0037 Score=66.47 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=71.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcc-CceEEEec-------CCCcEEEEEEccCCCEE-EEEE---cCCcE
Q 004298 23 QIKIAEWNPEKDLLAMATE-----DSKILLHRFN-WQRLWTIS-------PGKSVTSLCWRPDGKAI-AVGL---EDGTI 85 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-----Dg~V~v~~l~-~~~v~~~~-------~~~~V~~l~wspDG~~L-asg~---~Dg~V 85 (763)
.+..++++|++++.++-+. ++.|.+|++. ++.+..+. ++..+..++++|++..+ ++.. .++.|
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i 147 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL 147 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE
Confidence 5889999999988776544 5789999995 55444443 22356899999865554 4444 67899
Q ss_pred EEEEccCCeEEEEecccC-----------------------------CceeEEEeecCCCceeccC
Q 004298 86 TLHDVENGKLLRSLKSHT-----------------------------VAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~-----------------------------~~V~~l~ws~~~~~l~s~s 122 (763)
.+||..+++..+.+..|. ..+..|+|+|+++.+..+.
T Consensus 148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 999999888877664431 1357789999987666553
No 223
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.35 E-value=0.013 Score=59.52 Aligned_cols=193 Identities=12% Similarity=-0.008 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDS--KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l 99 (763)
...+.|+ ++.++.+.+.+| .|.++++ +++.+..+.-+.........++|+.| ...+.++.+.+||.++.+.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 5788998 677777777766 8999999 67766666544444443344445554 44557999999999999999998
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCc-ccccCCcccccceecccCCCeeEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDT-GFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~-~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.... .....++++..+..+. ..+.+.++|..+.. ...... +.. ... ..++++.+. ++.+.
T Consensus 124 ~~~~---eG~glt~dg~~L~~Sd------Gs~~i~~iDp~T~~--v~~~I~V~~~g~~~----~~lNELe~~---~G~ly 185 (262)
T 3nol_A 124 NYDG---EGWGLTHNDQYLIMSD------GTPVLRFLDPESLT--PVRTITVTAHGEEL----PELNELEWV---DGEIF 185 (262)
T ss_dssp ECSS---CCCCEEECSSCEEECC------SSSEEEEECTTTCS--EEEEEECEETTEEC----CCEEEEEEE---TTEEE
T ss_pred ECCC---CceEEecCCCEEEEEC------CCCeEEEEcCCCCe--EEEEEEeccCCccc----cccceeEEE---CCEEE
Confidence 7532 2233345666555543 35678888876521 000000 000 000 011122222 34455
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+..-.++.|.+.+...- .++.+++..+........... .--..++++|+++.|++.+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~------~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI------DVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC------CCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcC------CceEEEEEcCCCCEEEEECC
Confidence 55445666666654332 345565543321110000000 12357999999999999875
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.23 E-value=0.00086 Score=72.60 Aligned_cols=109 Identities=8% Similarity=-0.106 Sum_probs=83.3
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEc
Q 004298 27 AEWNPEKDLLAMATE-----DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDV 90 (763)
Q Consensus 27 l~~sP~~~lLA~~s~-----Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdv 90 (763)
....|+++.+.+... ++.|.+++. +++.+..+..+.... ++++|||+++.++. .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 344789988887765 678999999 667777787665555 99999999888876 3678999999
Q ss_pred cCCeEEEEecccC-------CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKLLRSLKSHT-------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~~~~l~~h~-------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+++.+.++.... .....+.++|||+++..+.. ..++.+.++|...
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~----~~~~~VsVID~~t 169 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF----SPAPAVGVVDLEG 169 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC----SSSCEEEEEETTT
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc----CCCCeEEEEECCC
Confidence 9999998875321 24667999999997766530 0257888998875
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.0078 Score=65.91 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=112.2
Q ss_pred CCCCEEEE-EeCCCeEEEEEccCc----eE-EEec-------CC-CcEEEEEEccCCCEEEEEEcC------CcEEEEEc
Q 004298 31 PEKDLLAM-ATEDSKILLHRFNWQ----RL-WTIS-------PG-KSVTSLCWRPDGKAIAVGLED------GTITLHDV 90 (763)
Q Consensus 31 P~~~lLA~-~s~Dg~V~v~~l~~~----~v-~~~~-------~~-~~V~~l~wspDG~~Lasg~~D------g~V~lwdv 90 (763)
++++++.+ +-.++.|.|++.... ++ ..+. .+ .....+...||| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77877665 556688999998422 23 3331 23 256678889999 66665555 78999999
Q ss_pred cCCeEEEEecccCC---ceeEEEeecCCCceeccCCC----------CC---cccCCceeecCCCCCCCCCCCccc-CCc
Q 004298 91 ENGKLLRSLKSHTV---AVVCLNWEEDAQPSKNDFGN----------IP---TYEDRTSRFFPPAPRIPQMPGLVS-GDT 153 (763)
Q Consensus 91 e~g~~~~~l~~h~~---~V~~l~ws~~~~~l~s~s~~----------~~---~~~d~~i~~wd~~~~~~~l~~~~s-~~~ 153 (763)
++++++.++..... --..+.|+|+++.+++.... .. .....++.+||.... ++..... +.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~~tI~vg~- 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRIHSLTLGE- 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEEEEEESCT-
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--cEeeEEecCC-
Confidence 99999999863222 23458899999987776310 00 023688999988752 1110000 00
Q ss_pred ccccCCcccccceecccCCCeeEEEEEc------CCCcEEEEEcCc--eee-eeeeeccccc--ccccCCCCCceeeecc
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGD------KDGSICFNIFGI--FPI-GKINIHKFHV--AIPNADEQGTCRLLNA 222 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs------~DG~I~lw~~~~--~~i-g~~~i~~~~~--~~~s~~~~~~~~l~~~ 222 (763)
....-..+.+.+++++++..++. .+++|.+|.++. +.. ..+++..... ...... ....--..
T Consensus 249 -----~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~--~~f~~~~~ 321 (462)
T 2ece_A 249 -----ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL--KPFKAVPP 321 (462)
T ss_dssp -----TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGG--GGGTEECC
T ss_pred -----CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccc--cccccCCC
Confidence 00111123344567766665555 566887776542 111 1111111000 000000 00000012
Q ss_pred ceeeEEecCCCCEEEEEeecC
Q 004298 223 SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 ~I~~v~~SpDg~~Llv~~~d~ 243 (763)
....+.+|+||++|+++..+.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTT
T ss_pred ceeEEEECCCCCEEEEEeCCC
Confidence 356789999999999987753
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.19 E-value=0.0038 Score=68.58 Aligned_cols=105 Identities=8% Similarity=-0.111 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCC-----CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEccCCe
Q 004298 31 PEKDLLAMATED-----SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDVENGK 94 (763)
Q Consensus 31 P~~~lLA~~s~D-----g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdve~g~ 94 (763)
|+++.+.++... +.|.+++. +++.+..+.-+..- .++++|||+++.++. .++.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 566666555442 68999999 67777888766666 999999999988886 47799999999999
Q ss_pred EEEEeccc-------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRSLKSH-------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~l~~h-------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+.++... ......+.++|||+++..+.. ..++.+.+.|...
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~----~~~~~VsVID~~t 209 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF----SPAPAVGVVDLEG 209 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC----SSSCEEEEEETTT
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEec----CCCCeEEEEECCC
Confidence 99887532 134567899999998876641 0256788888765
No 227
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.18 E-value=0.052 Score=55.09 Aligned_cols=204 Identities=12% Similarity=0.111 Sum_probs=114.5
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecCC--CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe---E
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISPG--KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK---L 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~~--~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~---~ 95 (763)
..+..++|+|+++ +.|+...++.|...+..++.+..+.-+ .....|++.++|.++++.-.++.+.++++.... .
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 4599999999876 555577778888888887666666422 468899999999876665577889999886433 2
Q ss_pred EEEec------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc-CCcccccceec
Q 004298 96 LRSLK------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD-DSEDSFRELAN 168 (763)
Q Consensus 96 ~~~l~------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~-~~~~~~~~~~~ 168 (763)
+.... ..+.....++|.|.+..+..+. +.....+|..........-+...+..+.. ..-..+..+..
T Consensus 107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~------E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK------EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE------ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred eeeeccccccccccCCcceEEEeCCCCEEEEEE------CcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 33332 1234568999999886554443 22222333222100000000000000000 00001112222
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.+ ..+++++..+.+..+..++........+.+....... ...+ ..-..++|.++|+ |+++++.
T Consensus 181 dp-~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l-----~~~~----~qpEGia~d~~G~-lyIvsE~ 243 (255)
T 3qqz_A 181 NQ-QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL-----SHNI----KQAEGVAMDASGN-IYIVSEP 243 (255)
T ss_dssp ET-TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC-----SSCC----CSEEEEEECTTCC-EEEEETT
T ss_pred cC-CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc-----cccc----CCCCeeEECCCCC-EEEEcCC
Confidence 22 4457888888888888887666666665544211000 0000 1134689999996 7777654
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.12 E-value=0.0051 Score=66.50 Aligned_cols=107 Identities=6% Similarity=-0.156 Sum_probs=78.3
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEcc
Q 004298 28 EWNPEKDLLAMATE--DS---KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDVE 91 (763)
Q Consensus 28 ~~sP~~~lLA~~s~--Dg---~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdve 91 (763)
...|+++.+.++.. .+ .|.+|+. +++.+..+..+... .++++|||+++.++. .++.|.+||..
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 34577877666553 22 7899998 66666677766555 999999999999986 36789999999
Q ss_pred CCeEEEEeccc-------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 92 NGKLLRSLKSH-------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ~g~~~~~l~~h-------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+++.+..+... ......+.|+|+|+++..++.. .++.+.++| ..
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~~~~v~viD-~t 156 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----AGPAVGLVV-QG 156 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----CCCeEEEEE-CC
Confidence 99888877532 1234589999999988776410 146788888 54
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.01 Score=64.95 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCEEEEEeCC------CeEEEEEc-cCceEEEecCC----CcEEEEEEccCCCEEEEEE------------
Q 004298 24 IKIAEWNPEKDLLAMATED------SKILLHRF-NWQRLWTISPG----KSVTSLCWRPDGKAIAVGL------------ 80 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D------g~V~v~~l-~~~~v~~~~~~----~~V~~l~wspDG~~Lasg~------------ 80 (763)
-..+.+.|+| +++++..+ |.|.+++. +++.+-++..+ ..-..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 3556789999 66665554 78999998 46666666522 2244688999999888874
Q ss_pred -------cCCcEEEEEccCCeEEEEecccC--CceeEEEe--ecCCCceeccC
Q 004298 81 -------EDGTITLHDVENGKLLRSLKSHT--VAVVCLNW--EEDAQPSKNDF 122 (763)
Q Consensus 81 -------~Dg~V~lwdve~g~~~~~l~~h~--~~V~~l~w--s~~~~~l~s~s 122 (763)
.+.+|.+||+.+++.+.++.... .....+.| +|++++...+.
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 37899999999999888887531 24455655 99998766544
No 230
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.86 E-value=0.17 Score=50.83 Aligned_cols=204 Identities=11% Similarity=-0.039 Sum_probs=112.4
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDS--KILLHRF-NWQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITL 87 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~l 87 (763)
-++.|+.. .-...+.|++ +.+..+.+.+| .|.++++ +++.+-.+.-..........++| +.....+.++.+.+
T Consensus 13 ~~~phd~~--~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 13 KRYPHDTT--AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEECCTT--CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEcCCCCc--cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 33445433 4578899997 56666666654 8999999 67666666544444333333334 45555668999999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCcccccCCcccccce
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDTGFTDDSEDSFREL 166 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~~~~~~~~~~~~~~ 166 (763)
||.++.+.+.++...... ..++ +++..+..+. .++.+.++|..+.. ...... +..+.. -..++++
T Consensus 90 ~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSd------gs~~l~~iDp~t~~--~~~~I~V~~~g~~---~~~lNeL 155 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEG-WALT--SDDSHLYMSD------GTAVIRKLDPDTLQ--QVGSIKVTAGGRP---LDNLNEL 155 (243)
T ss_dssp EETTTTEEEEEEECSSCC-CEEE--ECSSCEEEEC------SSSEEEEECTTTCC--EEEEEECEETTEE---CCCEEEE
T ss_pred EECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEEC------CCCeEEEEeCCCCe--EEEEEEEccCCcc---cccceee
Confidence 999999999998753222 3443 4565554443 46778888876521 000000 000000 0011122
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccC-CCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNA-DEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~-~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+ .++.+.+..-.+..|.+-+... ..++.+++..+....... .... .--..++++|+++.|++...
T Consensus 156 e~---~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~------~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EW---VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN------DVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE---ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS------SCEEEEEEETTTTEEEEEET
T ss_pred EE---eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcC------CceEEEEEcCCCCEEEEECC
Confidence 21 1344555544455666655433 245666655432221100 0000 12357999999999998865
No 231
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.84 E-value=0.56 Score=48.36 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCC--cEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG--TITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg--~V~lwdve~g~~~~ 97 (763)
.....++|+|+++++++...++.|..|+.+++....+..+..+.++++.|||+++++..... .|..++..+|+...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45788999999998877778899988888776554445566789999999999666554433 46667777787643
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.82 E-value=8.3e-05 Score=80.53 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC--cEE-EEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK--SVT-SLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--~V~-~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.+..+.+++.++++++.||.|+.|+. +|+.+|...... .+. +.... ++..+++|+.||.|+.||.++|+.+.++
T Consensus 40 ~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 40 VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------
T ss_pred ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 444445567778888889999999999 788888875321 110 01111 3457788889999999999999998887
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+. ...++|++..++.++ .++.+..||...
T Consensus 119 ~~~~----~~~~~p~~~~v~~~~------~dg~v~a~d~~t 149 (369)
T 2hz6_A 119 SSAF----ADSLSPSTSLLYLGR------TEYTITMYDTKT 149 (369)
T ss_dssp ------------------EEEEE------EEEEEECCCSSS
T ss_pred cCCC----cccccccCCEEEEEe------cCCEEEEEECCC
Confidence 6543 234456777777776 688999999865
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.66 E-value=0.026 Score=58.59 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
+.++...+++. +.+++.++.|..++..++.+|.... ...+.++...++|.+.+.. +.|..+| .+|+.+..+...
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~ 213 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG 213 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC
Confidence 45556666666 4457778889999988888888763 4456677777888755443 8888999 788887777665
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
...+.++...+++...+.. .++.+..++.
T Consensus 214 ~~~~~~~~~~~~g~l~v~t-------~~~gl~~~~~ 242 (330)
T 3hxj_A 214 YWTVTRPAISEDGTIYVTS-------LDGHLYAINP 242 (330)
T ss_dssp SCCCSCCEECTTSCEEEEE-------TTTEEEEECT
T ss_pred CcceeceEECCCCeEEEEc-------CCCeEEEECC
Confidence 5678888888887655544 2445555553
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.59 E-value=0.053 Score=55.05 Aligned_cols=204 Identities=10% Similarity=-0.004 Sum_probs=110.2
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITLHD 89 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwd 89 (763)
-++.|+.. .-...+.|+ ++.+..+.+.+|.|.++++ +++.+..+ -..........++| +.....+.++.+.+||
T Consensus 47 ~~~phd~~--~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 47 REYPHATN--AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEECCTT--CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEcCCCc--cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 34444433 235788888 4677788888899999998 66655555 33333332233344 4455566899999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCcccccCCcccccceec
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~~~~~~~~~~~~~~~~ 168 (763)
.++.+.+.++... ..-..++ +++..+..+. .++++.++|..+. +...... +..... -..++.+.+
T Consensus 123 ~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSd------Gs~~l~~iDp~T~--~v~~~I~V~~~g~~---v~~lNeLe~ 188 (268)
T 3nok_A 123 GMPPQRERTTRYS-GEGWGLC--YWNGKLVRSD------GGTMLTFHEPDGF--ALVGAVQVKLRGQP---VELINELEC 188 (268)
T ss_dssp TTTTEEEEEEECS-SCCCCEE--EETTEEEEEC------SSSEEEEECTTTC--CEEEEEECEETTEE---CCCEEEEEE
T ss_pred CCcCcEEEEEeCC-CceeEEe--cCCCEEEEEC------CCCEEEEEcCCCC--eEEEEEEeCCCCcc---cccccccEE
Confidence 9999999998753 2223333 4566555543 4678888887652 1000000 000000 001122222
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
. ++.+.+..-.++.|.+-+...- .++.+++..+.........+. ..--..++++|+++.|++...
T Consensus 189 ~---dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~-----~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 189 A---NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP-----EAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp E---TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT-----TCCEEEEEECTTTCCEEEEET
T ss_pred e---CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCc-----CCceEEEEEcCCCCEEEEeCC
Confidence 2 3345554445566666554332 345555443211111000000 012357999999999998754
No 235
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.46 E-value=0.0066 Score=72.04 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=70.9
Q ss_pred CeEEEEEc-CCCCEEEEEeCC-C----eEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEEcC-----CcEEEEEc
Q 004298 23 QIKIAEWN-PEKDLLAMATED-S----KILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGLED-----GTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~s-P~~~lLA~~s~D-g----~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~~D-----g~V~lwdv 90 (763)
.+...+|| |||++||.+... | +|+++++.+. ....-.-.....+++|+|||+.|+....| ..|+.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 47789999 999999865532 2 4999998544 31100000113468999999988887765 25888888
Q ss_pred cCCeE--EEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKL--LRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~--~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++.. ...+. ........+.|+|||++++..+... ....+.++|...
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~l~~~d~~~ 304 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---ETAEVHLLDLRK 304 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---SCEEEEEEESSS
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---CCceEEEEECCC
Confidence 77641 22222 2223466789999999776543110 233455566543
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.36 E-value=0.0083 Score=64.62 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=65.2
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEE-cCCcEEEEEccCCe
Q 004298 27 AEWNPEKDLLAMATE---------DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGL-EDGTITLHDVENGK 94 (763)
Q Consensus 27 l~~sP~~~lLA~~s~---------Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~-~Dg~V~lwdve~g~ 94 (763)
++++|+++.+.++.. ++.+.++++ +++.+..+.-+....+++|+|||+.+ ++.. .++.|.++|+.+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 789999988776543 235679999 66777777766678999999999854 4455 59999999999999
Q ss_pred EEEEecccCCceeEEEee
Q 004298 95 LLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws 112 (763)
.+.++... .....+++.
T Consensus 349 vv~~I~vg-~~P~~i~~~ 365 (368)
T 1mda_H 349 DQSSVELD-KGPESLSVQ 365 (368)
T ss_dssp EEEECCCC-SCCCEEECC
T ss_pred EEEEEECC-CCCCEEEee
Confidence 99999764 344555554
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.03 E-value=0.081 Score=61.92 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=57.2
Q ss_pred EEEEcCCCCEEEEEeCCCe-------------------EEEEEc-cCceEEEecCC----------CcEEEEEEccCCC-
Q 004298 26 IAEWNPEKDLLAMATEDSK-------------------ILLHRF-NWQRLWTISPG----------KSVTSLCWRPDGK- 74 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~-------------------V~v~~l-~~~~v~~~~~~----------~~V~~l~wspDG~- 74 (763)
.++++|+.+++.+++.++. |..++. +|+.+|.+... ..+.......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5789999999999888764 899998 89999988621 1122223344776
Q ss_pred --EEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 75 --AIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 75 --~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.++++..+|.++++|.++|+.+...
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccc
Confidence 7899999999999999999998544
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.90 E-value=0.013 Score=68.86 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-ceeEEEeecCCCc
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVVCLNWEEDAQP 117 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~~l~ws~~~~~ 117 (763)
+|.|..|++ +|+.+|.+..+..+..-.+...|.++++|+.||.++.||.++|+.+.+++.... ...-+.|..+|+.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence 377999999 789999998665555556777888999999999999999999999998875432 2245778888864
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.87 E-value=0.02 Score=61.57 Aligned_cols=92 Identities=5% Similarity=-0.170 Sum_probs=70.0
Q ss_pred eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEccCCeEEEEecccC-------Cc
Q 004298 44 KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDVENGKLLRSLKSHT-------VA 105 (763)
Q Consensus 44 ~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdve~g~~~~~l~~h~-------~~ 105 (763)
+|.+++. +++.+-++.-+..- .+.++|||+++.++. .++.|.+||..+++.+.++.... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 8889998 66777777755544 899999999999886 37899999999999999986431 24
Q ss_pred eeEEEeecCCCceeccCCCCCcccCCceee--cCCCC
Q 004298 106 VVCLNWEEDAQPSKNDFGNIPTYEDRTSRF--FPPAP 140 (763)
Q Consensus 106 V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~--wd~~~ 140 (763)
...+.++|||+++..+... ....+.+ +|...
T Consensus 126 P~~ia~SpDGk~lyVan~~----~~~~v~V~~iD~~t 158 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFG----SSAAAGLSVPGASD 158 (368)
T ss_dssp TTSEEECTTSSCEEEEECS----SSCEEEEEETTTEE
T ss_pred cceEEEcCCCCEEEEEccC----CCCeEEEEEEchhh
Confidence 6789999999988766410 1345666 77743
No 240
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.80 E-value=0.089 Score=62.26 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=62.1
Q ss_pred EEEEEcCCCCEEEEEeCC-----CeEEEEEccC-c----eEEEecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEcc
Q 004298 25 KIAEWNPEKDLLAMATED-----SKILLHRFNW-Q----RLWTISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVE 91 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~D-----g~V~v~~l~~-~----~v~~~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve 91 (763)
..++|+||++.|+....+ ..|++|++.+ + .++.-........+.|+|||++|+.... ...|+++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 357899999988877765 3578888743 2 3343333445678999999999988763 3468889988
Q ss_pred CC--eE-EEEec-ccCCceeEEEeecCCCceecc
Q 004298 92 NG--KL-LRSLK-SHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 92 ~g--~~-~~~l~-~h~~~V~~l~ws~~~~~l~s~ 121 (763)
++ +. +..+. ........+.|+..+.++..+
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t 337 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILT 337 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEe
Confidence 75 33 13333 334455666665444444443
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.78 E-value=0.015 Score=68.02 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=61.3
Q ss_pred CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeEEEeecCCCce
Q 004298 43 SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVCLNWEEDAQPS 118 (763)
Q Consensus 43 g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~l~ws~~~~~l 118 (763)
|.|..|++ +++.+|.+.++..+.+..+..+|..+++|+.||.+++||.++|+.+.++.... ....-+.|..+|+..
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 78999999 78999999877666666777888899999999999999999999999987533 233456677787643
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.56 E-value=1.6 Score=43.74 Aligned_cols=95 Identities=9% Similarity=-0.047 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEEccCceEEEec-CC-CcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLA-MATEDSKILLHRFNWQRLWTIS-PG-KSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA-~~s~Dg~V~v~~l~~~~v~~~~-~~-~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~l 99 (763)
+..++|+|++..|. +-..++.|.++++++..+..+. .+ ....+++++|++..|.++. ..+.|.+++.........+
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence 67899999765544 4455789999999776544433 22 5789999999876665554 6788999998643222222
Q ss_pred cccCCceeEEEeecCCCce
Q 004298 100 KSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l 118 (763)
.........++++|++..+
T Consensus 118 ~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 118 DTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp CSSCSSEEEEEEETTTTEE
T ss_pred ECCCCCccEEEEeeCCCEE
Confidence 2222467899999965443
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.54 E-value=0.017 Score=65.45 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEccCc-------------eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRFNWQ-------------RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~-------------~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..++.++|||+++.+++ .+.+|.++++... .+..+..|.....++|+|||....+..-|+.|..||
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 67899999999777655 5688999999533 345666788899999999994444555899999999
Q ss_pred ccC----------CeEEEEecccCCce-----eEEEeecCCCceeccC
Q 004298 90 VEN----------GKLLRSLKSHTVAV-----VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 90 ve~----------g~~~~~l~~h~~~V-----~~l~ws~~~~~l~s~s 122 (763)
+++ .+.+.++..|..+- ..+..+|||+++.++.
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 987 66788887765432 1224578999887764
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.50 E-value=0.54 Score=48.38 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCeEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEe
Q 004298 33 KDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~w 111 (763)
+..+.+++.++.|..++..++.+|.... ...+.++...++|. +.+|+.++.|..+|.. |+.+..+......+.++..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 5566778888999999988888888763 34456677777887 5667788999999988 8887777665566777777
Q ss_pred ecCCCceec
Q 004298 112 EEDAQPSKN 120 (763)
Q Consensus 112 s~~~~~l~s 120 (763)
.+++...+.
T Consensus 185 d~~g~l~v~ 193 (330)
T 3hxj_A 185 GKDGTIYFG 193 (330)
T ss_dssp CTTCCEEEE
T ss_pred cCCCEEEEE
Confidence 777765544
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.01 E-value=0.65 Score=46.63 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe-cCC-CcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI-SPG-KSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~-~~~-~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~ 96 (763)
....++++|++. +.++-...+.|.++++++.....+ ..+ .....++++|++..|.++.. .+.|..+++. |+..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~ 158 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNR 158 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCc
Confidence 468899999765 444455568899999976533222 222 56789999997666655553 4688888875 4333
Q ss_pred EEec-ccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCC
Q 004298 97 RSLK-SHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 97 ~~l~-~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~ 139 (763)
..+. ..-.....++|++++..+. +.. ..+.+..++..
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~------~~~~I~~~~~~ 197 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDA------GTHRAECLNPA 197 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEEC------CCCEEEEEecC
Confidence 3332 2234678899999876443 333 45677777654
No 246
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.96 E-value=1.2 Score=48.52 Aligned_cols=111 Identities=7% Similarity=0.041 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCEEEEEeC-CC----eEEEEEccCceE--EEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATE-DS----KILLHRFNWQRL--WTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg----~V~v~~l~~~~v--~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
....++|+|+++.|.++.. ++ .+.++..++... ..+.......+++++| +|.++++-..++.|..++..++.
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 4678999999995555543 22 344444443221 2222234467889999 77777777788999999988766
Q ss_pred EEEEecc-cCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCC
Q 004298 95 LLRSLKS-HTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 95 ~~~~l~~-h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
....... .......++|+|+++. .++.. ..+.|..++..
T Consensus 260 ~~~~~~~~~~~~P~gia~~pdG~~lyv~d~------~~~~I~~~~~d 300 (430)
T 3tc9_A 260 TTPLFTIQDSGWEFHIQFHPSGNYAYIVVV------NQHYILRSDYD 300 (430)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEET------TTTEEEEEEEE
T ss_pred EEEEEEcCCCCcceeEEEcCCCCEEEEEEC------CCCEEEEEeCC
Confidence 5322221 1235788999999984 34433 45666666543
No 247
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=94.90 E-value=0.13 Score=60.15 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=78.9
Q ss_pred EEEcCCC---CEEEEEeCCCeEEEEEc-cCceEEEecCC------------CcE------------------------EE
Q 004298 27 AEWNPEK---DLLAMATEDSKILLHRF-NWQRLWTISPG------------KSV------------------------TS 66 (763)
Q Consensus 27 l~~sP~~---~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~------------~~V------------------------~~ 66 (763)
+....+| +.++.++.+|.|++++. +|+.+|.+..+ ..+ ..
T Consensus 318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 3444467 67888999999999998 89999987521 111 15
Q ss_pred EEEccCCCEEEEEEcC-------------------------------------------CcEEEEEccCCeEEEEecccC
Q 004298 67 LCWRPDGKAIAVGLED-------------------------------------------GTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 67 l~wspDG~~Lasg~~D-------------------------------------------g~V~lwdve~g~~~~~l~~h~ 103 (763)
++++|++.++.++..+ |.|..||+.+|+.+.++.. .
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-V 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-S
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-C
Confidence 6889998888876542 7899999999999888763 3
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++....+..++..+..++ .|+.++.||..+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~------~dg~l~a~D~~t 507 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGT------ADGRLVAYHAAT 507 (677)
T ss_dssp SSCCCCEEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred CCCcCcceEeCCCEEEEEC------CCCcEEEEECCC
Confidence 4444555566666666666 789999999875
No 248
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.81 E-value=0.88 Score=48.12 Aligned_cols=68 Identities=7% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEE-EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTS-LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~-l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
++..+.+++.++.|..++. +|+.+|....+..+.+ ... ++..+.+++.+|.|..+|.++|+.+.++..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 4567778889999999998 7999999875433221 111 245788889999999999999999887754
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.78 E-value=0.42 Score=55.55 Aligned_cols=75 Identities=28% Similarity=0.370 Sum_probs=57.9
Q ss_pred EEEEcCCCCEEEEEeCCCe-------------------EEEEEc-cCceEEEecCC----------CcEEEEEEccCCC-
Q 004298 26 IAEWNPEKDLLAMATEDSK-------------------ILLHRF-NWQRLWTISPG----------KSVTSLCWRPDGK- 74 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~-------------------V~v~~l-~~~~v~~~~~~----------~~V~~l~wspDG~- 74 (763)
.++++|+.+++.+++.++. |..++. +|+.+|.+... ..........||+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 4788998899888887763 888887 89999998632 2233334445886
Q ss_pred --EEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 75 --AIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 75 --~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+++++.+|.++++|.++|+.+...+
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEecccc
Confidence 78999999999999999999986554
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=94.44 E-value=0.45 Score=49.41 Aligned_cols=96 Identities=5% Similarity=0.012 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--C-------------------CCcEEEEEEcc-CCCEEEEEEc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--P-------------------GKSVTSLCWRP-DGKAIAVGLE 81 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~-------------------~~~V~~l~wsp-DG~~Lasg~~ 81 (763)
...++|+|+++++.++..++.|..|+..+..+..+. . ...+.++++.| +|+ |.++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 356899999997888888999999988654443321 1 13578999998 665 555554
Q ss_pred CCcEEEEEccCCeEEEEecc-----cCCceeEEEeec-CCCceecc
Q 004298 82 DGTITLHDVENGKLLRSLKS-----HTVAVVCLNWEE-DAQPSKND 121 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~-----h~~~V~~l~ws~-~~~~l~s~ 121 (763)
.+.|..+|..+++. ..+.. .......+.+.+ +|...++.
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d 144 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTD 144 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEEC
Confidence 55588888775543 22211 113467889999 88766654
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=94.33 E-value=1.8 Score=44.76 Aligned_cols=110 Identities=10% Similarity=-0.039 Sum_probs=69.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec---CC---CcEEEEEEcc-CCCEEEEEEc-------------
Q 004298 23 QIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS---PG---KSVTSLCWRP-DGKAIAVGLE------------- 81 (763)
Q Consensus 23 ~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~---~~V~~l~wsp-DG~~Lasg~~------------- 81 (763)
.+..++++| ++++++ +...+.|..++..+..+..+. .+ .....+++.| +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 477899998 565554 544555777777544332221 11 3578899999 9986665432
Q ss_pred ----CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceecc-CCCCCcccCCceeecCCCC
Q 004298 82 ----DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKND-FGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 82 ----Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~-s~~~~~~~d~~i~~wd~~~ 140 (763)
+|.|..||..+++....... -.....++|++++..+..+ . ..+.+..++...
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~ 216 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEF------LSHQIVKYWLEG 216 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEG------GGTEEEEEESSS
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeC------CCCeEEEEECCC
Confidence 36788889877765433221 2345679999998754333 2 356777776553
No 252
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.89 E-value=0.43 Score=50.58 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-cCCceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS-HTVAVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~-h~~~V~~l~ 110 (763)
+..+.+++.++.+..++. +|+.+|....+. ..++.. ++..+.++..+|.+..+|..+|+.+..... ....+....
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 315 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV 315 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence 466777888999999998 899999987543 333333 567888889999999999999998877652 122222222
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. +..+..++ .++.+..+|..+
T Consensus 316 ~~--~~~l~v~~------~~g~l~~~d~~t 337 (376)
T 3q7m_A 316 LY--NGNLVVGD------SEGYLHWINVED 337 (376)
T ss_dssp EE--TTEEEEEC------TTSEEEEEETTT
T ss_pred EE--CCEEEEEe------CCCeEEEEECCC
Confidence 22 23344444 577788887654
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=93.55 E-value=0.39 Score=48.86 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=70.5
Q ss_pred CCCEEEE-EeCCCeEEEEEc-cCceEEEecCC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-----
Q 004298 32 EKDLLAM-ATEDSKILLHRF-NWQRLWTISPG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT----- 103 (763)
Q Consensus 32 ~~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~----- 103 (763)
+++.+.. .-.++.+.+++. +.+.+..+..+ .. ....++||+.+.++..++.|.++|.++.+.+.++....
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 3545544 445789999998 67777777655 32 34466799988888889999999999999988876422
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..++.+.|. ++...+... .++.+.+.|..+
T Consensus 152 ~~~nele~~-dg~lyvn~~------~~~~V~vID~~t 181 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIW------QTDCIARISAKD 181 (266)
T ss_dssp CCEEEEEEE-TTEEEEEET------TSSEEEEEETTT
T ss_pred ccceeEEEE-CCEEEEecC------CCCeEEEEECCC
Confidence 136678888 675555443 566777777764
No 254
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.54 E-value=1.1 Score=46.89 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=69.2
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEEccCceEEEec-C-----C---CcEEEEEE---ccCCCEEEEEEc----------
Q 004298 25 KIAEWNPEKDLLAMAT-EDSKILLHRFNWQRLWTIS-P-----G---KSVTSLCW---RPDGKAIAVGLE---------- 81 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~~v~~~~-~-----~---~~V~~l~w---spDG~~Lasg~~---------- 81 (763)
.+++|++....+..++ ..++|..|+..++.+..+. + + ..+.+|.| .|+|+++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4689998666555555 7899999999755444442 1 1 14689999 699888886542
Q ss_pred ---CCcEEEEEcc---CCeEEEEecc--c-----------CCceeEEEeecCCCceeccC
Q 004298 82 ---DGTITLHDVE---NGKLLRSLKS--H-----------TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 82 ---Dg~V~lwdve---~g~~~~~l~~--h-----------~~~V~~l~ws~~~~~l~s~s 122 (763)
+..|..+|+. +++.+....- . ......|+..++|...++++
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 6779999998 8877665431 1 12477889999998777665
No 255
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.47 E-value=1.3 Score=47.78 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce---------------EEEec-----CCCcEEEEEEcc---CCCEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR---------------LWTIS-----PGKSVTSLCWRP---DGKAIAVG 79 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~---------------v~~~~-----~~~~V~~l~wsp---DG~~Lasg 79 (763)
.|..+..||+|++||..+ +..|.|-.+++.. -+.+. +...|..+.|+| .|..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 588899999999999886 5578888886321 23332 245799999999 45689999
Q ss_pred EcCCcEEEEEccCC--eEEEEec---------ccCCceeEEEeecCCCce
Q 004298 80 LEDGTITLHDVENG--KLLRSLK---------SHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 80 ~~Dg~V~lwdve~g--~~~~~l~---------~h~~~V~~l~ws~~~~~l 118 (763)
..|+.|++||+... +.. .++ .....|.+++|.+++-.+
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEE
Confidence 99999999999752 122 222 223578899999876433
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=93.09 E-value=0.58 Score=47.33 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.......++++.|...+ .++.+.+|+. +.+.+.++..+..-..+ .+||+.|..+..++.|.++|.++.+.+.++..
T Consensus 87 ~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 87 YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 43333444565555554 5788999998 77788888754432334 46888888877788899999999999988765
Q ss_pred cC-----CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 102 HT-----VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 102 h~-----~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. ..++-+.|. +|+..+.. +.+..|.+.|..+
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~------w~~~~I~vIDp~t 201 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANV------WQTNKIVRIDPET 201 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEE------TTSSEEEEECTTT
T ss_pred ccCCccccccceeEEE-CCEEEEEE------ccCCeEEEEECCC
Confidence 22 234557787 67655544 2566777777654
No 257
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=93.05 E-value=0.52 Score=51.60 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=84.7
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc-CC----cEEEEEccCCeEE
Q 004298 24 IKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DG----TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg----~V~lwdve~g~~~ 96 (763)
...++|+| +...|.++...+.|..++++++.+..+. .......++|+++|+.|.++.. ++ .+..++. ++...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence 46789998 3544555554478888888776665554 4556889999999996666654 22 2333443 33221
Q ss_pred --EEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccCC
Q 004298 97 --RSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 97 --~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
..+.. ......++++| ++...++.. ..+.+..++...... .+.. .+... ......+++
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~--~~~~~---------~P~gia~~p 279 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFT--IQDSG---------WEFHIQFHP 279 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEE--CSSSS---------CCEEEEECT
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEE--cCCCC---------cceeEEEcC
Confidence 22221 24467788999 666555543 456677776543210 0000 00000 011233456
Q ss_pred Cee-EEEEEcCCCcEEEEEcC
Q 004298 173 RFS-ILCSGDKDGSICFNIFG 192 (763)
Q Consensus 173 ~~~-~L~sgs~DG~I~lw~~~ 192 (763)
+++ ++++-..++.|..++++
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEeCC
Confidence 666 55665677888887654
No 258
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.76 E-value=12 Score=40.47 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=40.6
Q ss_pred cCCCCEEEEEeCCCeEEEEEcc-Cc--eEEEecC---CCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 30 NPEKDLLAMATEDSKILLHRFN-WQ--RLWTISP---GKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l~-~~--~v~~~~~---~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+.++.-++++. ++.|+.-+++ .. ++.+..+ -..|..+..+|+|++||..+ +..|.|..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~ 95 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPW 95 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCT
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecC
Confidence 44555554443 4678777774 22 4444442 34678899999999999985 45788888763
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=92.23 E-value=1.2 Score=45.09 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=70.5
Q ss_pred cCCCCE-EEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC----
Q 004298 30 NPEKDL-LAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT---- 103 (763)
Q Consensus 30 sP~~~l-LA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~---- 103 (763)
.++++. ..+.-.++.+.+|+. +.+.+.++..+..-.+++ +||+.|.++..++.|.++|.++.+.+.++....
T Consensus 102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 102 ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp EECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 334444 444446788999998 677777777544334444 688888888889999999999999998876422
Q ss_pred -CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 -VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 -~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..++-+.|. +|+..+... ....|.+.|..+
T Consensus 180 v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~T 210 (268)
T 3nok_A 180 VELINELECA-NGVIYANIW------HSSDVLEIDPAT 210 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEET------TCSEEEEECTTT
T ss_pred cccccccEEe-CCEEEEEEC------CCCeEEEEeCCC
Confidence 244667787 666555442 566777777654
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.15 E-value=0.23 Score=56.66 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=56.2
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCc-eeEEEeecCCCcee
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVA-VVCLNWEEDAQPSK 119 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~-V~~l~ws~~~~~l~ 119 (763)
+|.|..|+. +++.+|++..+..+.+......+..+.+++.||.++.+|.++|+.+.+++..... -.-+.+..+++..+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 478999998 7889999876554444334445677888999999999999999999988753221 12344667776444
Q ss_pred c
Q 004298 120 N 120 (763)
Q Consensus 120 s 120 (763)
.
T Consensus 523 ~ 523 (571)
T 2ad6_A 523 G 523 (571)
T ss_dssp E
T ss_pred E
Confidence 3
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.06 E-value=0.23 Score=56.80 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce-eEEEeecCCCc
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV-VCLNWEEDAQP 117 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V-~~l~ws~~~~~ 117 (763)
+|.|..|++ +|+.+|+...+..+..-.....|..+++|+.||.++.||.++|+.+.+++.....+ .-+.|..+|+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 578999998 78999998754333222222356678889999999999999999999887633222 23667778863
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.96 E-value=1.8 Score=43.30 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=69.6
Q ss_pred EcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC---
Q 004298 29 WNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT--- 103 (763)
Q Consensus 29 ~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~--- 103 (763)
..+.++.|. +.-.++.+.+|+. +.+.+.++..+..-.+++ +||+.|.++..++.|.++|.++.+.++++....
T Consensus 70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc
Confidence 333444444 4456788999998 677788887554434554 678888888889999999999999998876532
Q ss_pred --CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 --VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 --~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..++-+.|. +|+..+... .+..|.+.|..+
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw------~s~~I~vIDp~t 179 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVW------LTSRIARIDPAS 179 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEET------TTTEEEEECTTT
T ss_pred ccccceeeEEe-CCEEEEEEC------CCCeEEEEECCC
Confidence 245566776 565544432 455666666654
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=91.60 E-value=16 Score=42.94 Aligned_cols=196 Identities=9% Similarity=0.044 Sum_probs=102.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC---------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP---------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~---------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
..|.++...+++.+.+ ++.++-+.+|+...+.+..+.+ ...|.++...++|.+.+ |..+ -|.+|+..+
T Consensus 215 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp CCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred CeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence 4588888887777655 5544448888886555544432 35699999999987554 4455 588899887
Q ss_pred CeEEEEecc-------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 93 GKLLRSLKS-------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 93 g~~~~~l~~-------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
++..+.... ....|.++...++|..-+.. .++-+..++.....-............. ...+..
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt-------~~~Gl~~~~~~~~~~~~~~~~~~~~~l~---~~~V~~ 361 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT-------YFGGLNYYHPIRNRFKNIRNIPYKNSLS---DNVVSC 361 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE-------SSSCEEEECGGGGSSEEECCCTTSSSCS---CSSEEE
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE-------CCCCeEEeCCCcccceEEcCCCCCCCCC---CCeeEE
Confidence 765443211 23579999988888755443 2344555553321000000000000000 111222
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+. .+.+++ |-+|+.+|-+..|+...-....+.... .... ..+-...|.+++..++|+.|.+++.+
T Consensus 362 i~--~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~-------~~~~--~~l~~~~v~~i~~d~~g~~lWigt~~ 426 (795)
T 4a2l_A 362 IV--EDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQE-------DESA--RGIGSNNIKAVYVDEKKSLVYIGTHA 426 (795)
T ss_dssp EE--ECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---------------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred EE--ECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCC-------CCcc--cCCCCccEEEEEEcCCCCEEEEEeCc
Confidence 22 234443 556777777887765432222221000 0000 00112347788888887756666553
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=90.28 E-value=1.2 Score=50.59 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=69.3
Q ss_pred CCC---CEEEEEeCCCeEEEEEc-cCceEEEecCCC--------------cE--------------------------EE
Q 004298 31 PEK---DLLAMATEDSKILLHRF-NWQRLWTISPGK--------------SV--------------------------TS 66 (763)
Q Consensus 31 P~~---~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--------------~V--------------------------~~ 66 (763)
++| ++++.++.+|.+.+++. +|+.+|....+. .+ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 466 35677888999999997 899999875321 11 23
Q ss_pred EEEccCCCEEEEEE-------------------------------------cCCcEEEEEccCCeEEEEecccCCceeEE
Q 004298 67 LCWRPDGKAIAVGL-------------------------------------EDGTITLHDVENGKLLRSLKSHTVAVVCL 109 (763)
Q Consensus 67 l~wspDG~~Lasg~-------------------------------------~Dg~V~lwdve~g~~~~~l~~h~~~V~~l 109 (763)
++++|++..+.++. .+|.|..||..+|+.+.++... ..+...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~ 469 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGG 469 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSB
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccce
Confidence 67888888777764 2478999999999988877542 222222
Q ss_pred EeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 110 NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 110 ~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.....+..+..++ .|+.+..||..+
T Consensus 470 ~~~t~gg~v~~g~------~dg~l~a~D~~t 494 (571)
T 2ad6_A 470 TLYTKGGLVWYAT------LDGYLKALDNKD 494 (571)
T ss_dssp CEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred eEEECCCEEEEEc------CCCeEEEEECCC
Confidence 2222344444455 688999998764
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=90.20 E-value=5.3 Score=45.96 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=49.6
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEEccCceEEEe----cCCCcEEEEEEccCCCEEEEEE-cC-----CcEEEEEccCC
Q 004298 25 KIAEWNPEKDLLAMATE-DSKILLHRFNWQRLWTI----SPGKSVTSLCWRPDGKAIAVGL-ED-----GTITLHDVENG 93 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~-Dg~V~v~~l~~~~v~~~----~~~~~V~~l~wspDG~~Lasg~-~D-----g~V~lwdve~g 93 (763)
...++.+++.++++|+. ++.+.+|+...+ .|.. .....-.+.+..+||+++++|+ .+ ..+.+||..++
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 34677889999999884 457999998433 2432 2222334566678999999998 44 56899999877
Q ss_pred eEE
Q 004298 94 KLL 96 (763)
Q Consensus 94 ~~~ 96 (763)
+..
T Consensus 325 ~W~ 327 (656)
T 1k3i_A 325 TWT 327 (656)
T ss_dssp EEE
T ss_pred cce
Confidence 644
No 266
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=89.78 E-value=18 Score=42.39 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|.++...+++++|.+|+.++-|.+|+...+++..+.+ ...|.++...++|++.+.. . +.+.+||.++++.
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSF 483 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeE
Confidence 458899998888856678887779999986666665542 4579999999998865544 4 4588899887765
Q ss_pred EEEecc------cCCceeEEEeecCCCceecc
Q 004298 96 LRSLKS------HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 96 ~~~l~~------h~~~V~~l~ws~~~~~l~s~ 121 (763)
.+.... ....|.++...++|...+..
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 433211 23578999888888765544
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=89.29 E-value=14 Score=39.95 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---C-eEEEEEccCceE--EEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---S-KILLHRFNWQRL--WTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g-~V~v~~l~~~~v--~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
....++|+|+++++++.... . .+......+... ..+........++++| +|.+.++-..++.|+.+|..+|..
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 47889999999955544321 1 233333322211 1122234456789999 776666666788999999887876
Q ss_pred EEEe-ccc-CCceeEEEeecCCCce-eccCCCCCcccCCceeecCC
Q 004298 96 LRSL-KSH-TVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 96 ~~~l-~~h-~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~ 138 (763)
...+ ... ...-..++|+|++..+ ++.. ..+.|..++.
T Consensus 263 ~~~~~~~~~~~~~~~ia~dpdG~~LYvad~------~~~~I~~~~~ 302 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWHPTGDWAYIIYN------GKHCIYRVDY 302 (433)
T ss_dssp EEEEEECSCCSSCEEEEECTTSSEEEEEET------TTTEEEEEEB
T ss_pred EEEEeccCCCCCcccEEEeCCCCEEEEEeC------CCCEEEEEeC
Confidence 3333 211 1233479999999843 4433 4566766554
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=89.11 E-value=3.6 Score=44.81 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=61.9
Q ss_pred eEEEEEcCC---CCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC----c-EEEEEccCCe
Q 004298 24 IKIAEWNPE---KDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG----T-ITLHDVENGK 94 (763)
Q Consensus 24 V~~l~~sP~---~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg----~-V~lwdve~g~ 94 (763)
...++|+|+ +.+++ +...+.|+.++.....+..+. ......+++|+|+|+ |.++...+ . +...+...+.
T Consensus 141 P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 457899995 55544 433388988888555565554 445689999999999 55544322 1 3333322221
Q ss_pred E-EEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCC
Q 004298 95 L-LRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 95 ~-~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
. ...+. .......+++.| ++.+.++.. .++.+..++..
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~------~~~~V~~~d~~ 258 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRY------HHAMISSYDPA 258 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBT------TCSEEEEECTT
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEEC------CCCEEEEEECC
Confidence 1 01111 123456677888 565554443 45667777765
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=88.88 E-value=21 Score=36.48 Aligned_cols=92 Identities=10% Similarity=-0.111 Sum_probs=53.2
Q ss_pred CCeEEEEEccCceEE-EecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC---CeE-EEEecccCCceeEEEeecCC
Q 004298 42 DSKILLHRFNWQRLW-TISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN---GKL-LRSLKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 42 Dg~V~v~~l~~~~v~-~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~---g~~-~~~l~~h~~~V~~l~ws~~~ 115 (763)
.+.|+..++++.... .+.....+.+++|+++++.|..+. .++.|..++... +.. ...+...-.....+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 456777787554333 334556789999999766555554 678999999875 122 22232222456788887644
Q ss_pred C-ceeccCCCCCcccCCceeecCCC
Q 004298 116 Q-PSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 116 ~-~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
. ...+.. ..+.|.+++..
T Consensus 89 ~~ly~~d~------~~~~I~~~~~~ 107 (316)
T 1ijq_A 89 SNIYWTDS------VLGTVSVADTK 107 (316)
T ss_dssp TEEEEEET------TTTEEEEEETT
T ss_pred CeEEEEEC------CCCEEEEEeCC
Confidence 3 333333 45666666654
No 270
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=88.69 E-value=0.8 Score=53.21 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce-eEEEeecCCC-ce
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV-VCLNWEEDAQ-PS 118 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V-~~l~ws~~~~-~l 118 (763)
+|.|..|++ +|+.+|....+..+....+...|.++++|+.||.++.||.++|+.+.+++...... .-+.+..+|+ ++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 378999998 88899998866555555566678899999999999999999999998887543211 2344556665 44
Q ss_pred ec
Q 004298 119 KN 120 (763)
Q Consensus 119 ~s 120 (763)
+.
T Consensus 517 a~ 518 (668)
T 1kv9_A 517 AI 518 (668)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 271
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.09 E-value=4.4 Score=42.08 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+..+..+.+.|++.+++ ++.+|.+++.+.++..-|... .+..+.++.+.|+++.+++|. +|.| .+....|+
T Consensus 204 ~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp SSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS
T ss_pred CCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc
Confidence 45688899999987765 556788776655545566532 123589999999888777665 6766 45555566
Q ss_pred EEEEecc---cCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 95 LLRSLKS---HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 95 ~~~~l~~---h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
.-..+.. ....+.++.|.+++..++.+ .++.+.-++
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G-------~~G~i~~~~ 319 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFILG-------QKGILLRYV 319 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEEC-------STTEEEEEC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEEc-------CCceEEEEc
Confidence 5555542 24578889998777766666 366665554
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=87.93 E-value=0.97 Score=51.71 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=53.2
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-ceeEEEeecCCCc
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVVCLNWEEDAQP 117 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~~l~ws~~~~~ 117 (763)
.|.|..|++ +|+.+|....+..+.+-.....|..+.+|+.||.++.+|.++|+.+.+++.... ...-+.|..+|+.
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 467888898 788899986443322212233567788899999999999999999988865332 2233566677763
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=87.81 E-value=15 Score=37.80 Aligned_cols=110 Identities=6% Similarity=-0.172 Sum_probs=70.2
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEc-C-CcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLE-D-GTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~-D-g~V~lwdve~g~~~~~ 98 (763)
...+++++.+ ++.++-...+.|.++++++.....+. ......+++..|++..|..+.. . +.|...++. |.....
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~ 157 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS 157 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEE
Confidence 4678888754 55555567789999999776444332 3457889999996665555543 3 678888875 544444
Q ss_pred ec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 99 LK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 99 l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+. ..-.....++|++++..+..+. ...+.|..++..
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D-----~~~~~I~~~d~d 194 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVN 194 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETT
T ss_pred EEECCCCCceEEEEeccCCEEEEEE-----CCCCeEEEEecC
Confidence 32 2234678999998765543332 135567666654
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=87.14 E-value=33 Score=36.25 Aligned_cols=93 Identities=5% Similarity=-0.109 Sum_probs=55.6
Q ss_pred CCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 41 EDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 41 ~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
....|+..++.+..+..+ .....+.+++|.+.+..|... ...+.|..++...+.....+.........+++.+.+..+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 345677777765544333 334568899999866555544 477889999987655444343323455677777654433
Q ss_pred -eccCCCCCcccCCceeecCCC
Q 004298 119 -KNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 119 -~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.+.. ..+.|.+.+..
T Consensus 174 Y~~d~------~~~~I~~~~~d 189 (386)
T 3v65_B 174 YWTDS------GTSRIEVANLD 189 (386)
T ss_dssp EEEET------TTTEEEECBTT
T ss_pred EEEcC------CCCeEEEEeCC
Confidence 3332 34566666554
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=86.99 E-value=13 Score=37.19 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEe-----c-----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTI-----S-----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~-----~-----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
....+++.+++.++++.-.++.+.+++++. ..++.. . .+....+|+|+|+++.|.++.......||.+.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 466888988887655554667899998832 222311 1 23346899999999888888776666666654
Q ss_pred ---CCeEEEEec-------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 92 ---NGKLLRSLK-------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ---~g~~~~~l~-------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+..++.+. .+-..+..+++.|....+...|. ..+.+..+|...
T Consensus 151 g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-----~s~~L~~~d~~g 204 (255)
T 3qqz_A 151 GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-----ESRALQEVTLVG 204 (255)
T ss_dssp STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-----TTTEEEEECTTC
T ss_pred ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-----CCCeEEEEcCCC
Confidence 121222221 12346789999987654333221 455666666554
No 276
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=86.26 E-value=6.6 Score=40.97 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=78.4
Q ss_pred eEEEEE---cCCCCEEEEEeC-------------CCeEEEEEcc----CceEEEecC-----C---------CcEEEEEE
Q 004298 24 IKIAEW---NPEKDLLAMATE-------------DSKILLHRFN----WQRLWTISP-----G---------KSVTSLCW 69 (763)
Q Consensus 24 V~~l~~---sP~~~lLA~~s~-------------Dg~V~v~~l~----~~~v~~~~~-----~---------~~V~~l~w 69 (763)
+..+.| .|++.++++... +..|..|+++ ++.+|.+.- + .....++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 578999 789888876442 6779999988 888887751 1 24789999
Q ss_pred ccCCCEEEEEEcC-CcEEEEEccCCeEEEEec------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 70 RPDGKAIAVGLED-GTITLHDVENGKLLRSLK------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 70 spDG~~Lasg~~D-g~V~lwdve~g~~~~~l~------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++|+.-++++.. +.|...+.. |+.+..+. ......+.|.++|++..++... ..+.+.-+|+..
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~------~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG------GPRALTAFDVSK 215 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES------SSSSEEEEECSS
T ss_pred CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc------CCCeEEEEcCCC
Confidence 9999988888877 887777754 44333221 1122467999999998777664 366677777663
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=85.54 E-value=3.4 Score=46.94 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=65.7
Q ss_pred CCCC---EEEEEeCCCeEEEEEc-cCceEEEecCCC--------------cE----------------------------
Q 004298 31 PEKD---LLAMATEDSKILLHRF-NWQRLWTISPGK--------------SV---------------------------- 64 (763)
Q Consensus 31 P~~~---lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--------------~V---------------------------- 64 (763)
.+|+ .++.++.+|.+++++. +|+.+|....+. .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4663 7778899999999998 899999875321 00
Q ss_pred ----EEEEEccCCCEEEEEE---------------------------------cCCcEEEEEccCCeEEEEecccCCcee
Q 004298 65 ----TSLCWRPDGKAIAVGL---------------------------------EDGTITLHDVENGKLLRSLKSHTVAVV 107 (763)
Q Consensus 65 ----~~l~wspDG~~Lasg~---------------------------------~Dg~V~lwdve~g~~~~~l~~h~~~V~ 107 (763)
..++++|+...+.+.. .+|.|.-||..+|+.+.+..... ++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 1346677655555433 25789999999999887765432 221
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.-.....+..+..++ .|+.++.||..+
T Consensus 490 ~g~~~tagglvf~g~------~dg~l~A~D~~t 516 (582)
T 1flg_A 490 AGVLATAGNLVFTGT------GDGYFKAFDAKS 516 (582)
T ss_dssp SCCEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred ccceEeCCCEEEEEC------CCCcEEEEECCC
Confidence 111112234444455 688888888764
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=85.04 E-value=3.7 Score=47.34 Aligned_cols=117 Identities=8% Similarity=-0.000 Sum_probs=71.5
Q ss_pred eEEEEEcC-CCCEEEEEeCCC-----------eEEEEEcc---CceEEEec--CCCcEEEEEEccCCCEEEEEE-cCCcE
Q 004298 24 IKIAEWNP-EKDLLAMATEDS-----------KILLHRFN---WQRLWTIS--PGKSVTSLCWRPDGKAIAVGL-EDGTI 85 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg-----------~V~v~~l~---~~~v~~~~--~~~~V~~l~wspDG~~Lasg~-~Dg~V 85 (763)
-...++.| ++++++.|+.+. .+.+|+.. |..+-... +.....+.++.++|+++++|+ .++.+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 34667788 888888887543 57788873 33443332 223344678889999999998 55689
Q ss_pred EEEEccCCeEEEEecccCCc-eeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 86 TLHDVENGKLLRSLKSHTVA-VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~~~-V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+||..+++....-..+... -.++...++++.++.|+..........+.+||...
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 99999887654432222222 13445556888877776211111224566777654
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=84.49 E-value=30 Score=40.40 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|.++...+++.+.+ |+.++-|..++...+++..+. +...|.++...++|++.+ |.. +-+..+|..+++..+
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe
Confidence 4588888888887655 676667888887555555543 346799999998887544 455 568889988776543
Q ss_pred Eeccc-----CCceeEEEeecCCCceecc
Q 004298 98 SLKSH-----TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 98 ~l~~h-----~~~V~~l~ws~~~~~l~s~ 121 (763)
..... ...|.++...++|...+..
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred cccCcccccccceeEEEEEcCCCCEEEEE
Confidence 32222 3578999888888765544
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=84.08 E-value=21 Score=36.12 Aligned_cols=189 Identities=13% Similarity=0.010 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCce--EEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS--KILLHRF-NWQR--LWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~--v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~- 95 (763)
..+..++++|+++++++....+ .|..++. +++. +...........++..+++..+++-..+|.|..+|..+++.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4578899999999776654332 3555554 3432 22222333445666666665555555689999999776532
Q ss_pred EEEec---------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 96 LRSLK---------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 96 ~~~l~---------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+.... ..-.....| ++++..+..+. ...+.+..++.... ..+. ....+... .....+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d-----~~~~~I~~~~~~~~-g~~~----~~~~~~~~--~~P~gi 217 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN-----TEKMLLLRIPVDST-DKPG----EPEIFVEQ--TNIDDF 217 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE-----TTTTEEEEEEBCTT-SCBC----CCEEEEES--CCCSSE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEe-----CCCCEEEEEEeCCC-CCCC----ccEEEecc--CCCCCe
Confidence 21111 011233445 77776443332 14567777776531 1100 00000000 001111
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEec---CCCCEEEEEeec
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVALS---KDLFHLTVLCSG 242 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S---pDg~~Llv~~~d 242 (763)
+.+++++++++....+.|..++.+ |+.. +...... -....+++|. ||++.|+++...
T Consensus 218 --~vd~dG~l~va~~~~~~V~~~~~~----G~~~~~~~~~~~-------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 218 --AFDVEGNLYGATHIYNSVVRIAPD----RSTTIIAQAEQG-------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --EEBTTCCEEEECBTTCCEEEECTT----CCEEEEECGGGT-------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --EECCCCCEEEEeCCCCeEEEECCC----CCEEEEeecccc-------------cCCceEEEEecccCCCCEEEEECCC
Confidence 233456666666666777776532 2211 0000000 0135678998 899999998875
Q ss_pred C
Q 004298 243 Q 243 (763)
Q Consensus 243 ~ 243 (763)
+
T Consensus 279 ~ 279 (306)
T 2p4o_A 279 G 279 (306)
T ss_dssp T
T ss_pred C
Confidence 4
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=84.01 E-value=25 Score=37.52 Aligned_cols=112 Identities=6% Similarity=-0.162 Sum_probs=70.5
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEE-c-CCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGL-E-DGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~-~-Dg~V~lwdve~g~~~~ 97 (763)
....+++.+. +++..+-...+.|.+.+++|.....+. ......+|++.|.+..|.... . .+.|...++. |....
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccE
Confidence 3567888874 455555566788988888776443332 335688999999666665554 3 4788888876 43333
Q ss_pred Ee-cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SL-KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l-~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+ ...-.....|++++++..+..+. ...+.|..++...
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD-----~~~~~I~~~d~dG 277 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNG 277 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTS
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEE-----CCCCEEEEEeCCC
Confidence 33 22235678999998766544332 1355666666543
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=83.90 E-value=21 Score=37.24 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEEccCceEEEe-cC-CCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDSKILLHRFNWQRLWTI-SP-GKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l~~~~v~~~-~~-~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+..++|+|....|..+ ...+.|..+++++.....+ .. .....++++.+.+..| .+-...+.|.+.+.........
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 36788999866555444 4567888888866543333 22 2356789999855555 4445678899999764332222
Q ss_pred ecccCCceeEEEeecCCCcee
Q 004298 99 LKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~ 119 (763)
+...-.....+++.|.+..+.
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEE
T ss_pred EeCCCCCcceEEEecCcCeEE
Confidence 333335678899998655443
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=83.83 E-value=28 Score=35.75 Aligned_cols=101 Identities=14% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc----cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF----NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l----~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+.+..+..++++|++.+++.+. +|.+..-.- +|+++ .......+..+.+.|+|+.++ ++.+|.+++.+...|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence 3345688999999988887654 555433221 23333 222445788999999997665 4567887766433354
Q ss_pred EEEEecc----cCCceeEEEeecCCCceeccC
Q 004298 95 LLRSLKS----HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 95 ~~~~l~~----h~~~V~~l~ws~~~~~l~s~s 122 (763)
.-..+.. +...+.++.+.+++..++.+.
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 4433321 223588899988877777664
No 284
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=83.13 E-value=12 Score=39.15 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCce--EEEec----CCCcEEEEEEccC---CCEEEEEEc-C-----CcEEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQR--LWTIS----PGKSVTSLCWRPD---GKAIAVGLE-D-----GTITLH 88 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~--v~~~~----~~~~V~~l~wspD---G~~Lasg~~-D-----g~V~lw 88 (763)
...++|.|+|+++++ ..+|.|.+++ +++. +..+. .......|+|+|| +..|.++.. + +.|..+
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 578999999996654 5569998888 5542 22222 1346889999998 555555543 2 667778
Q ss_pred EccCCe------EEEEecc---cCCceeEEEeecCCCceecc
Q 004298 89 DVENGK------LLRSLKS---HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 89 dve~g~------~~~~l~~---h~~~V~~l~ws~~~~~l~s~ 121 (763)
+...++ .+..+.. .......+.|.|+|.+.++.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 876442 1222331 11234689999999766654
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.83 E-value=11 Score=41.75 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=66.7
Q ss_pred eEEEEEcCC-C-CEEEEEeCCCeEEEEEccCceEEEecCC-----CcEEEEEE-------ccCCCEEEEEEcCC-c----
Q 004298 24 IKIAEWNPE-K-DLLAMATEDSKILLHRFNWQRLWTISPG-----KSVTSLCW-------RPDGKAIAVGLEDG-T---- 84 (763)
Q Consensus 24 V~~l~~sP~-~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~-----~~V~~l~w-------spDG~~Lasg~~Dg-~---- 84 (763)
...|+|+|. . +++++....+.|++.++..+.+..+... .....|+| +++|+.|.++...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 568999994 4 5555555456788888877777776533 25899999 99999776666543 2
Q ss_pred --EEEEEccC-CeEE-----EEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCC
Q 004298 85 --ITLHDVEN-GKLL-----RSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 85 --V~lwdve~-g~~~-----~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|.+++... |... ..+... .....++.+|++.. .++.. ..+.+..+|..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~------~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSY------EKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEET------TTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEEC------CCCEEEEEecc
Confidence 66665333 2221 122211 23456677885544 44433 56677777765
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=82.69 E-value=51 Score=34.58 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCC----C---EEEEEe-C--CCeEEEEEcc--CceEEEec-------CC-CcEEEEEE--ccC-CC-EEE
Q 004298 22 SQIKIAEWNPEK----D---LLAMAT-E--DSKILLHRFN--WQRLWTIS-------PG-KSVTSLCW--RPD-GK-AIA 77 (763)
Q Consensus 22 ~~V~~l~~sP~~----~---lLA~~s-~--Dg~V~v~~l~--~~~v~~~~-------~~-~~V~~l~w--spD-G~-~La 77 (763)
+++..+..-|.- . ++++.. . +++|.+|+++ ...+..+. .+ ..+..+|. +|+ |+ +++
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yaf 147 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAM 147 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEE
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEE
Confidence 346666665532 1 333333 3 5789999883 33454542 22 56777888 774 55 678
Q ss_pred EEEcCCcEEEEEcc-------CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc
Q 004298 78 VGLEDGTITLHDVE-------NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS 150 (763)
Q Consensus 78 sg~~Dg~V~lwdve-------~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s 150 (763)
+...+|.+..|++. +++.++++.. .+.+..|...+....+..+- ++..|..++..+..........
T Consensus 148 V~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~e------Ed~GIw~~da~p~~~~~~~~v~ 220 (355)
T 3amr_A 148 VTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAE------EDEAIWKFSAEPDGGSNGTVID 220 (355)
T ss_dssp EECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEE------TTTEEEEEECSTTSCSCCEEEE
T ss_pred EECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEec------ccceEEEEeCCcCCCCCceEEE
Confidence 88889999999883 3356777765 46788888888766666664 5544444454442211100000
Q ss_pred --CCcccccCCcccccceec--ccCCCeeEEEEEcCCCcEEEEEcC-c-eeeeeeeeccc
Q 004298 151 --GDTGFTDDSEDSFRELAN--SSHQRFSILCSGDKDGSICFNIFG-I-FPIGKINIHKF 204 (763)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~--~~~~~~~~L~sgs~DG~I~lw~~~-~-~~ig~~~i~~~ 204 (763)
+...+. ....-+.. ....++-+++++-.+++..+|+.. . ..++++.+...
T Consensus 221 ~~~~g~l~----aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~ 276 (355)
T 3amr_A 221 RADGRHLT----RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITDG 276 (355)
T ss_dssp EBSSSSBC----SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECCC
T ss_pred EecCCccc----cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecCC
Confidence 000111 11111222 222233355555477899999874 2 35677766553
No 287
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=81.89 E-value=1.9 Score=42.31 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-c-CceEEEecCCCcE--------EEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-N-WQRLWTISPGKSV--------TSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~-~~~v~~~~~~~~V--------~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.++.++|+|++.+.|+ .+|.++-.+. + ....|--. ...| .++.|.|+|.+-++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 3779999999999888 5675433222 1 11122111 1223 78999999998888 669887777532
Q ss_pred CeE-------EEEecccCCceeEEEeecCCCceecc
Q 004298 93 GKL-------LRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 93 g~~-------~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
... ...-..--..+.++.+.|+|.+.+..
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 111 11111112578999999999876554
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=80.95 E-value=39 Score=35.95 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=59.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEEccCce----EEE-ec-CCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDSKILLHRFNWQR----LWT-IS-PGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l~~~~----v~~-~~-~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~ 94 (763)
.+..++|++....|..+ ...+.|..+++++.. ... +. .......+++.+.+..| .+-...+.|.+.+.+...
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~ 192 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 192 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc
Confidence 47889999866555544 456788888886521 222 22 23467889999854444 444567889999987544
Q ss_pred EEEEecccCCceeEEEeecCCCce
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
....+...-.....|+..|.+..+
T Consensus 193 ~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 193 RKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp EEEEEECSSCCEEEEEEETTTTEE
T ss_pred eEEEEeCCCCCcceEEEecccCeE
Confidence 333333333557889999865444
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=80.34 E-value=58 Score=33.74 Aligned_cols=108 Identities=7% Similarity=-0.066 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.++.+..|+.. |.. +..+.|+..++++.....+ .....+.+++|++.+..|... ...+.|..++...+.....+..
T Consensus 36 ~~C~~~~~~~~-ll~-~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEPV-LLF-ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCCE-EEE-ECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCce-eEe-ecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 44555555333 332 3345577777766544433 334568899999866655555 4678899999876554333333
Q ss_pred cCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCC
Q 004298 102 HTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.......+++.+.+.. ..+.. ..+.|...+..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~------~~~~I~~~~~d 146 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDS------GTSRIEVANLD 146 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred CCCCccEEEEecCCCeEEEEcC------CCCeEEEEcCC
Confidence 2345677888765443 33332 34566666554
No 290
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=79.95 E-value=11 Score=39.68 Aligned_cols=97 Identities=6% Similarity=-0.016 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEec---C-CCcEEEEEEccC---CCEEEEEEc----C----CcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTIS---P-GKSVTSLCWRPD---GKAIAVGLE----D----GTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~---~-~~~V~~l~wspD---G~~Lasg~~----D----g~V~l 87 (763)
...++|.|+++++++ ..+|.|++++.+++ .+..+. . ......|+|+|| +..|.++.. + +.|..
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 578999999986654 55699988876654 222221 1 245889999998 555555543 3 56777
Q ss_pred EEccCC--e-----E-EEEeccc-CCceeEEEeecCCCceecc
Q 004298 88 HDVENG--K-----L-LRSLKSH-TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 88 wdve~g--~-----~-~~~l~~h-~~~V~~l~ws~~~~~l~s~ 121 (763)
|+...+ . . +..+... ......|.|.|+|.+.++.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 776543 1 1 1223211 1134679999999866654
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=79.81 E-value=59 Score=38.18 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=58.5
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCeEEEEEccCce-----EEEec-CCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDL-LAMATEDSKILLHRFNWQR-----LWTIS-PGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~~-----v~~~~-~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~ 94 (763)
.+..++|++.... +.+-...+.|+.+++++.. ...+. ......+|++.+.++.|..+ ...+.|.+.++....
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 3678899985544 4444556778888886531 12222 23456789999877655555 467889999987433
Q ss_pred EEEEecccCCceeEEEeecCCCce
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
....+...-.....|++.|.+..+
T Consensus 505 ~~~l~~~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 505 RKTLFRENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEE
T ss_pred EEEEEeCCCCCcceEEEecCCCCE
Confidence 322233333567889998875443
No 292
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=79.80 E-value=16 Score=38.77 Aligned_cols=97 Identities=8% Similarity=-0.019 Sum_probs=60.8
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEccCceEEEec-C-CCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEWNPEKDLLA-MATEDSKILLHRFNWQRLWTIS-P-GKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA-~~s~Dg~V~v~~l~~~~v~~~~-~-~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+..++|+|....|. +-...+.|..+++++..+..+. . ......+++.+.+..| .+-...+.|.+.+.........
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l 196 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 196 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe
Confidence 467899998665444 4446678888888776544332 2 2345678999865555 4445677888888764333223
Q ss_pred ecccCCceeEEEeecCCCcee
Q 004298 99 LKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~ 119 (763)
+...-.....+++.|.+..+.
T Consensus 197 ~~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 197 LWQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp ECSSCSCEEEEEEETTTTEEE
T ss_pred ecCCCCCCcEEEEEcCCCeEE
Confidence 333335678899998665443
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=79.46 E-value=89 Score=38.41 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEEcCC------CCEEEEEeC-CCeEEEEEcc-CceEEEecC--CCcEEEEEEcc--CCCEEEEEEcCCcE
Q 004298 18 KPVASQIKIAEWNPE------KDLLAMATE-DSKILLHRFN-WQRLWTISP--GKSVTSLCWRP--DGKAIAVGLEDGTI 85 (763)
Q Consensus 18 k~~~~~V~~l~~sP~------~~lLA~~s~-Dg~V~v~~l~-~~~v~~~~~--~~~V~~l~wsp--DG~~Lasg~~Dg~V 85 (763)
+.++..|.|+++.|. .+++|+|.. |++|+|+.++ .+.++...- .....++.... ...+|.+|-.||.+
T Consensus 550 ~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 550 TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGAL 629 (1158)
T ss_dssp EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeE
Confidence 445667999999874 379999997 9999999994 445544332 22344444432 33588999999998
Q ss_pred EEEEc--cCCeEEEE--ecccCCceeEEEeecCC
Q 004298 86 TLHDV--ENGKLLRS--LKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 86 ~lwdv--e~g~~~~~--l~~h~~~V~~l~ws~~~ 115 (763)
.-+.+ .+|+.... ..-...++.-..+...+
T Consensus 630 ~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~ 663 (1158)
T 3ei3_A 630 FYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS 663 (1158)
T ss_dssp EEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS
T ss_pred EEEEEcCCCCccccceeEEcCCCceEEEEEeeCC
Confidence 65554 45655422 11123455544454433
No 294
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=79.31 E-value=10 Score=43.12 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=65.0
Q ss_pred CCC---CEEEEEeCCCeEEEEEc-cCceEEEecCC--------------CcE--------------------------EE
Q 004298 31 PEK---DLLAMATEDSKILLHRF-NWQRLWTISPG--------------KSV--------------------------TS 66 (763)
Q Consensus 31 P~~---~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~--------------~~V--------------------------~~ 66 (763)
.+| +.++.++.+|.+++++. +|+.+|..... ..+ ..
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 397 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH 397 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence 466 56777889999999998 89999976521 111 24
Q ss_pred EEEccCCCEEEEEE---------------------------------------cCCcEEEEEccCCeEEEEecccCCcee
Q 004298 67 LCWRPDGKAIAVGL---------------------------------------EDGTITLHDVENGKLLRSLKSHTVAVV 107 (763)
Q Consensus 67 l~wspDG~~Lasg~---------------------------------------~Dg~V~lwdve~g~~~~~l~~h~~~V~ 107 (763)
++++|+.+++.+.. .+|.+.-||+.+|+.+.+... ..++.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~ 476 (599)
T 1w6s_A 398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVW 476 (599)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCC
T ss_pred ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCcc
Confidence 67788777665532 346788899999988877642 11111
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.-.....+..+..++ .|+.++.||..+
T Consensus 477 ~g~~~tagg~vf~gt------~dg~l~A~D~~t 503 (599)
T 1w6s_A 477 GGTMATAGDLVFYGT------LDGYLKARDSDT 503 (599)
T ss_dssp SBCEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred CcceEecCCEEEEEC------CCCeEEEEECCC
Confidence 101112233333444 688888888765
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=74.97 E-value=39 Score=34.67 Aligned_cols=95 Identities=8% Similarity=-0.024 Sum_probs=57.6
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCce--EEEec-CCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQR--LWTIS-PGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~--v~~~~-~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~ 98 (763)
+..++|++... ++.+-...+.|..+++++.. ...+. .-....++++.+.+..| .+-...+.|.+++.+.......
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 116 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 116 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE
Confidence 56789998654 44455566788888886542 12222 22356688999855444 4445678899999764322222
Q ss_pred ecccCCceeEEEeecCCCce
Q 004298 99 LKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l 118 (763)
+.........+++.|.+..+
T Consensus 117 ~~~~~~~P~giavdp~~g~l 136 (318)
T 3sov_A 117 FWQELDQPRAIALDPSSGFM 136 (318)
T ss_dssp ECSSCSSEEEEEEEGGGTEE
T ss_pred EeCCCCCccEEEEeCCCCEE
Confidence 22334567888888865433
No 296
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=74.50 E-value=1.1e+02 Score=35.27 Aligned_cols=96 Identities=8% Similarity=0.093 Sum_probs=62.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--C-----CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--P-----GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~-----~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.++...+++.+.+ |+. +-|..|+....+...+. . ...|.++...++|++.+ |+.++-+..+|..+++
T Consensus 450 ~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 4588888888877554 555 55888887443332222 1 35799999999997555 4543447778877665
Q ss_pred EEEEecc----cCCceeEEEeecCCCceecc
Q 004298 95 LLRSLKS----HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 95 ~~~~l~~----h~~~V~~l~ws~~~~~l~s~ 121 (763)
..+ +.. ....|.++...++|...++.
T Consensus 527 ~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 527 VRK-FNQYEGFCSNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp EEE-ECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred EEE-ccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence 443 321 13568899888888765544
No 297
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=73.60 E-value=30 Score=35.53 Aligned_cols=110 Identities=9% Similarity=-0.113 Sum_probs=68.0
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEE--cCCcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGL--EDGTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdve~g~~~~~ 98 (763)
...+++.+.+ .++.+-...+.|.+++++|.....+ ........+++.|.+..|..+. ..+.|...+.. |.....
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~ 159 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFI 159 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEE
Confidence 4467888744 5555555678899999877543333 2345678999999766666555 25778888865 433333
Q ss_pred e-cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 99 L-KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 99 l-~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+ ...-.....|+|++++..+..+. ...+.|..++..
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD-----~~~~~I~~~d~d 196 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLD 196 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETT
T ss_pred EEECCCCCccEEEEeccCCEEEEEE-----CCCCEEEEEcCC
Confidence 3 22224568899998665443321 145666666654
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=73.03 E-value=39 Score=35.46 Aligned_cols=112 Identities=9% Similarity=0.108 Sum_probs=77.4
Q ss_pred CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEEcc--------CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEW--NPE-KD-LLAMATEDSKILLHRFN--------WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~--sP~-~~-lLA~~s~Dg~V~v~~l~--------~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..+..++. +|. +. ++.+...+|.+..|++. .+.+.++.-+..+..+...+....|.++-++..|..++
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence 34556777 774 44 46667788999999981 23566777778899999999999999999987777777
Q ss_pred cc-----CCeEEEEec-cc-CCceeEEEe--ecCCC--ceeccCCCCCcccCCceeecCCC
Q 004298 90 VE-----NGKLLRSLK-SH-TVAVVCLNW--EEDAQ--PSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 90 ve-----~g~~~~~l~-~h-~~~V~~l~w--s~~~~--~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.+ +++.+..+. ++ ...+..|+. .++++ .++++- .+.+..+|+..
T Consensus 208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ------G~~s~~Vydr~ 262 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ------GNSSYAIYDRQ 262 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG------GGTEEEEEESS
T ss_pred CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC------CCCEEEEEECC
Confidence 55 355665553 21 246888887 45554 444443 46677788765
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.77 E-value=34 Score=35.97 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=59.3
Q ss_pred CCeEEEEEcCCCCEEEEEeC---C------------CeEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEE-cCCc
Q 004298 22 SQIKIAEWNPEKDLLAMATE---D------------SKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGL-EDGT 84 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~---D------------g~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~-~Dg~ 84 (763)
.....+++.|+|.+.++... | ..=.||+++...+..+.. -...+.|+|+|||+.+.++. ..+.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~ 244 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHK 244 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCe
Confidence 45678888888887766431 1 123344443222222211 13468899999999887776 5788
Q ss_pred EEEEEcc-CCeEE--EEecccCCceeEEEeec-CCCceecc
Q 004298 85 ITLHDVE-NGKLL--RSLKSHTVAVVCLNWEE-DAQPSKND 121 (763)
Q Consensus 85 V~lwdve-~g~~~--~~l~~h~~~V~~l~ws~-~~~~l~s~ 121 (763)
|..|++. +|+.. +.+. .....-.++..+ +|.+.+++
T Consensus 245 I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 245 IHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 9999986 34432 2332 234556677777 47655544
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=72.40 E-value=5.7 Score=46.20 Aligned_cols=110 Identities=7% Similarity=-0.130 Sum_probs=66.2
Q ss_pred eEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEecC--CCcEEEEEEccCCCEEEEEE-cC-CcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTISP--GKSVTSLCWRPDGKAIAVGL-ED-GTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~-~D-g~V~lwdve~g~~~~~ 98 (763)
...+++.+. +.++++-...+.|.++++++..+..+.. ......|++.|++..|..+. .. +.|..+++. |.....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~ 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeE
Confidence 345777754 4555555566889999998776555432 24567899999666555443 33 678777765 332222
Q ss_pred ec-ccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCC
Q 004298 99 LK-SHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 99 l~-~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+. ..-.....|+|++++..+. +-+ ..+.|..++...
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~------~~~~I~~~d~dG 571 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDS------KLHSISSIDVNG 571 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEET------TTTEEEEECSSS
T ss_pred EEeCCCCCccEEEEeccCCEEEEEec------CCCeEEEEccCC
Confidence 21 2123567899998765443 332 456677776643
No 301
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=72.25 E-value=18 Score=37.01 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=51.3
Q ss_pred EEEcCCCCEEEEEeCC--------------CeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEE----cCCcEEEE
Q 004298 27 AEWNPEKDLLAMATED--------------SKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGL----EDGTITLH 88 (763)
Q Consensus 27 l~~sP~~~lLA~~s~D--------------g~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----~Dg~V~lw 88 (763)
--++|+++.|.-+... ..|+..++++.....+.... +..|+|+|+.|+-.. .+..|...
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP---CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 3478999998877643 34555555555444443322 347899999998876 33455555
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceecc
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
++. |.....+..+.. ..|+++++.+.-.
T Consensus 135 ~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 135 RID-GEEKKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp ETT-SCCCEEEESSCC----CCSEEETTEEEEE
T ss_pred ECC-CCCeEEEeCCCc----eEeeEECCEEEEE
Confidence 654 444445544432 3456666665544
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=72.08 E-value=77 Score=37.19 Aligned_cols=111 Identities=6% Similarity=-0.160 Sum_probs=70.4
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEE-cC-CcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGL-ED-GTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~-~D-g~V~lwdve~g~~~~~ 98 (763)
...+++.+.+ +++++-...+.|.+.+++|.....+. ......+|++.|.+..|..+. .+ +.|...++. |.....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEE
Confidence 4568888776 45555556788999999876554442 335689999999766665554 33 778888876 444333
Q ss_pred e-cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 99 L-KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 99 l-~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+ ...-.....|++.+.+..+..+. .....|...++..
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD-----~~~~~I~~~d~dG 589 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNG 589 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTS
T ss_pred EEeCCCCCceEEEEecCCCeEEEEe-----CCCCcEEEEecCC
Confidence 3 32235678899997665443332 1345566666543
No 303
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=71.84 E-value=30 Score=38.74 Aligned_cols=104 Identities=12% Similarity=0.023 Sum_probs=70.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEccC------ce--------EEEecCCCcEEEEEEccCCCEEEEEEcCC
Q 004298 19 PVASQIKIAEWNPEKDLLAMAT-EDSKILLHRFNW------QR--------LWTISPGKSVTSLCWRPDGKAIAVGLEDG 83 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~------~~--------v~~~~~~~~V~~l~wspDG~~Lasg~~Dg 83 (763)
|.|.....+..+|||+++++++ -+.+|.|+++.. .+ +-.+..|-.....+|.++|....+-.-|.
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 3444477899999999887765 467899999842 11 23334566778899999995445555899
Q ss_pred cEEEEEccCC----------eEEEEecccCCceeEEE-----eecCCCceeccC
Q 004298 84 TITLHDVENG----------KLLRSLKSHTVAVVCLN-----WEEDAQPSKNDF 122 (763)
Q Consensus 84 ~V~lwdve~g----------~~~~~l~~h~~~V~~l~-----ws~~~~~l~s~s 122 (763)
.|.-|+++.. .++.++..|-.+-...+ -.++|+++++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999753 56777776644322221 136777777764
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=70.58 E-value=19 Score=39.75 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=65.5
Q ss_pred CeEEEEE-------cCCCCEEEEEeCCC-------eEEEEEccC--ceE-----EEecCCCcEEEEEEccC-CCEEEEEE
Q 004298 23 QIKIAEW-------NPEKDLLAMATEDS-------KILLHRFNW--QRL-----WTISPGKSVTSLCWRPD-GKAIAVGL 80 (763)
Q Consensus 23 ~V~~l~~-------sP~~~lLA~~s~Dg-------~V~v~~l~~--~~v-----~~~~~~~~V~~l~wspD-G~~Lasg~ 80 (763)
....++| +++++.+.++...+ .|.+++... +.. ..+.......+++.+|+ |.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 4788999 99999555555443 254553222 211 11112234567889995 55556666
Q ss_pred cCCcEEEEEcc-------CCeE-----------EEEe-c-ccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCC
Q 004298 81 EDGTITLHDVE-------NGKL-----------LRSL-K-SHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 81 ~Dg~V~lwdve-------~g~~-----------~~~l-~-~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.++.|..+|.. ++.. ...+ . ........|+|+|++.. .++-. ....|+.++.
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~------~~h~I~kid~ 339 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI------NNHYFMRSDY 339 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET------TTTEEEEEEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC------CCCEEEEEec
Confidence 88899999997 6654 2221 1 12345689999999984 33333 4566666543
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=65.28 E-value=1.3e+02 Score=31.20 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC--ce--EEEec---CCCcEEEEEEccCCCEEEEEE-------cCCcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW--QR--LWTIS---PGKSVTSLCWRPDGKAIAVGL-------EDGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~--v~~~~---~~~~V~~l~wspDG~~Lasg~-------~Dg~V~l 87 (763)
.+|....|-. -+.|+..+ +..|+-|++.+ ++ ++.-. .+..|..-+-++|.+.++..+ -.|.+.|
T Consensus 107 e~VvfWkWis-~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 107 DDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp SCEEEEEECS-SSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccEEEEecC-CCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 3488888863 45667766 45688998844 33 33332 356788888899999776654 2367889
Q ss_pred EEccCCeEEEEecccC
Q 004298 88 HDVENGKLLRSLKSHT 103 (763)
Q Consensus 88 wdve~g~~~~~l~~h~ 103 (763)
|+++.+ .-..+.+|.
T Consensus 185 YS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 185 YSVDRK-VSQPIEGHA 199 (365)
T ss_dssp EETTTT-EEEEECCSE
T ss_pred Eeeccc-ccceeeeee
Confidence 998844 444566653
No 306
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=64.99 E-value=40 Score=36.65 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce--EEEecC-------CCcEEEEEEccC---CCEEEEEEc---------
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQR--LWTISP-------GKSVTSLCWRPD---GKAIAVGLE--------- 81 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~--v~~~~~-------~~~V~~l~wspD---G~~Lasg~~--------- 81 (763)
.+.++|.|+|+++++-...+.|++++. +++. +..+.. ......|+|+|| +..|.++..
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 578999999998876554457877775 3432 223321 235679999996 555555442
Q ss_pred ----CCcEEEEEccCC--e-----EE-EEecc-cCCceeEEEeecCCCceeccC
Q 004298 82 ----DGTITLHDVENG--K-----LL-RSLKS-HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 82 ----Dg~V~lwdve~g--~-----~~-~~l~~-h~~~V~~l~ws~~~~~l~s~s 122 (763)
...|.-++...+ + .+ ..+.. .......|.|.|+|.+.++.+
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554322 1 12 12221 123468899999998766644
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=64.57 E-value=18 Score=41.87 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEEccC----ceE-EEecC-CCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMAT-EDSKILLHRFNW----QRL-WTISP-GKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~----~~v-~~~~~-~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+..++|++....|..+. ..+.|..+++++ ... ..+.. ......|++.+.+. ++++-...+.|.+++.....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 356789998776655543 457788888865 221 11111 13456788886544 44444567889999977444
Q ss_pred EEEEecccCCceeEEEeecCCCcee
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
....+.........|++.|.+..+.
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly 511 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMY 511 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEE
Confidence 3333332234567788888654433
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=64.01 E-value=32 Score=35.88 Aligned_cols=97 Identities=9% Similarity=0.064 Sum_probs=56.4
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCceE---EEec-----CCCcEEEEEEccC---CCEEEEEE-c-------CC
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQRL---WTIS-----PGKSVTSLCWRPD---GKAIAVGL-E-------DG 83 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v---~~~~-----~~~~V~~l~wspD---G~~Lasg~-~-------Dg 83 (763)
...++|.|+++ +++ +...|.|++++.+++.. ..+. .......|+|+|| +..|.++. . ..
T Consensus 20 P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 57899999999 664 55679998888655321 1111 1234689999996 45554443 2 23
Q ss_pred cEEEEEccCC--eE--EE----Eecc---cCCceeEEEeecCCCceecc
Q 004298 84 TITLHDVENG--KL--LR----SLKS---HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 84 ~V~lwdve~g--~~--~~----~l~~---h~~~V~~l~ws~~~~~l~s~ 121 (763)
.|.-++...+ +. .. .+.. ....-..|.|.|+|.+.++.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 4655665432 11 11 1211 11124579999999766554
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.33 E-value=1.8e+02 Score=31.58 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC--ce--EEEec---CCCcEEEEEEccCCCEEEEEE-------cCCcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW--QR--LWTIS---PGKSVTSLCWRPDGKAIAVGL-------EDGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~--v~~~~---~~~~V~~l~wspDG~~Lasg~-------~Dg~V~l 87 (763)
.+|....|-. -+.|+..+ +..|+-|++.+ ++ ++.-. .+..|..-.-++|++.++..+ -.|.+.+
T Consensus 106 e~VvfWkWis-~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 106 DDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp SCCCEEEEEE-TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEecC-CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 3477788863 45667766 56799999844 33 33332 356788888899999877554 2467889
Q ss_pred EEccCCeEEEEecccCC
Q 004298 88 HDVENGKLLRSLKSHTV 104 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~ 104 (763)
|+++.+ .-..+.+|.+
T Consensus 184 YS~er~-~sQ~ieGhaa 199 (494)
T 1bpo_A 184 YSVDRK-VSQPIEGHAA 199 (494)
T ss_dssp EESTTC-CEEEECCSEE
T ss_pred eecccc-ccchheeeee
Confidence 998844 4445666643
No 310
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=60.93 E-value=65 Score=33.67 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cce--EEEec-----CCCcEEEEEEccC---CCEEEEEE---cCCcEEEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFN-WQR--LWTIS-----PGKSVTSLCWRPD---GKAIAVGL---EDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~--v~~~~-----~~~~V~~l~wspD---G~~Lasg~---~Dg~V~lwd 89 (763)
.+.++|.|+|+++++-...|.|++++.+ ++. +..+. .......|+++|| ...|.+.. .++.|.-|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 5789999999988776658999888764 332 22221 1245789999996 34444432 344555555
Q ss_pred ccCC----------eEE-EEecc-cCCceeEEEeecCCCceecc
Q 004298 90 VENG----------KLL-RSLKS-HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 90 ve~g----------~~~-~~l~~-h~~~V~~l~ws~~~~~l~s~ 121 (763)
...+ +.+ ..+.. ....-..|.|.|+|.+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence 4431 222 22321 11234679999999866654
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=59.24 E-value=1.1e+02 Score=30.31 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=37.2
Q ss_pred CCCEEEEEeCC-----CeEEEEEccC---ceEEEecCCCcEEEEEEccCCCEEEEEEcC-----CcEEEEEccCCeEEE
Q 004298 32 EKDLLAMATED-----SKILLHRFNW---QRLWTISPGKSVTSLCWRPDGKAIAVGLED-----GTITLHDVENGKLLR 97 (763)
Q Consensus 32 ~~~lLA~~s~D-----g~V~v~~l~~---~~v~~~~~~~~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~g~~~~ 97 (763)
++.+++.|+.+ ..+.+|++.. ..+-.......-.+.+ ..++++++.|+.+ ..+..||.++++...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56677777644 3577788733 3333332221111111 2278888888755 468899988776543
No 312
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=56.68 E-value=50 Score=33.70 Aligned_cols=88 Identities=6% Similarity=-0.112 Sum_probs=54.0
Q ss_pred EEEcCCCCEEEEEe--CCCe--EEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEc-CCcEEEEEccCCeEEEEecc
Q 004298 27 AEWNPEKDLLAMAT--EDSK--ILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 27 l~~sP~~~lLA~~s--~Dg~--V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve~g~~~~~l~~ 101 (763)
..|+|+++.|+... .++. |...+++|.....+..+.. ..|+|+|+.|.-.+. ...|...++..+.....+.
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~- 184 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD- 184 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-
Confidence 47889999998876 3444 4444456655555543322 567889998887765 6788888877555433332
Q ss_pred cCCceeEEEeecCCCceecc
Q 004298 102 HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~ 121 (763)
+... ..+.|++..++-.
T Consensus 185 --~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 185 --CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp --SCEE-EEEEEETTEEEEE
T ss_pred --CCcc-ceeeecCCEEEEE
Confidence 2222 2355887766543
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=53.65 E-value=1.5e+02 Score=29.29 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCCEEEEEeCC-----CeEEEEEcc------CceEEEecCCC-cEEEEEEccCCCEEEEEEcC-----CcEEEEEccCCe
Q 004298 32 EKDLLAMATED-----SKILLHRFN------WQRLWTISPGK-SVTSLCWRPDGKAIAVGLED-----GTITLHDVENGK 94 (763)
Q Consensus 32 ~~~lLA~~s~D-----g~V~v~~l~------~~~v~~~~~~~-~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~g~ 94 (763)
++.+++.|+.+ ..+.+|++. |+.+-...... ...++. .++++++.|+.+ ..+.+||..+++
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777754 357888872 33332222211 112222 278888888754 358889988776
Q ss_pred EE
Q 004298 95 LL 96 (763)
Q Consensus 95 ~~ 96 (763)
..
T Consensus 140 W~ 141 (301)
T 2vpj_A 140 WS 141 (301)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=53.34 E-value=45 Score=33.39 Aligned_cols=64 Identities=6% Similarity=0.034 Sum_probs=37.7
Q ss_pred CCCEEEEEeCC----CeEEEEEccCc---eEEEecCCCc-EEEEEEccCCCEEEEEEcC------CcEEEEEccCCeEEE
Q 004298 32 EKDLLAMATED----SKILLHRFNWQ---RLWTISPGKS-VTSLCWRPDGKAIAVGLED------GTITLHDVENGKLLR 97 (763)
Q Consensus 32 ~~~lLA~~s~D----g~V~v~~l~~~---~v~~~~~~~~-V~~l~wspDG~~Lasg~~D------g~V~lwdve~g~~~~ 97 (763)
++.+++.|+.+ ..+.+|+...+ .+-.+..... ..+.. -++++++.|+.+ ..+.+||..+++...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56677777654 56778887433 3322222111 12222 278888888865 468899998876543
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=51.99 E-value=1.1e+02 Score=30.21 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCceEEEe-c---CCCc-EEEEEEccCCCEEEEEEcC-------CcEEEEEccCCe
Q 004298 32 EKDLLAMATEDS-----KILLHRFNWQRLWTI-S---PGKS-VTSLCWRPDGKAIAVGLED-------GTITLHDVENGK 94 (763)
Q Consensus 32 ~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~-~---~~~~-V~~l~wspDG~~Lasg~~D-------g~V~lwdve~g~ 94 (763)
++.+++.|+.++ .+.+|++.... |.. . .... ..+.. -++++++.|+.+ ..+.+||..+++
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 566777776553 46677764332 332 2 1111 12222 377888887743 358899998776
Q ss_pred EEE
Q 004298 95 LLR 97 (763)
Q Consensus 95 ~~~ 97 (763)
...
T Consensus 185 W~~ 187 (302)
T 2xn4_A 185 WTY 187 (302)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=51.59 E-value=2.3e+02 Score=31.99 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=58.6
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEEccCceE--EEecCC-CcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT-EDSKILLHRFNWQRL--WTISPG-KSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~~v--~~~~~~-~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~ 97 (763)
.+..++|++.+..|..+. ..+.|..+++++... ..+..+ .....+++.+.+..|..+ ...+.|.+.+.. |+...
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~ 119 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRK 119 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCE
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEE
Confidence 367899999776655554 457788888876532 223333 578899999966655555 467899999986 43333
Q ss_pred Ee-cccCCceeEEEeecCCCc
Q 004298 98 SL-KSHTVAVVCLNWEEDAQP 117 (763)
Q Consensus 98 ~l-~~h~~~V~~l~ws~~~~~ 117 (763)
.+ ...-.....|++.|.+..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ 140 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGF 140 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTE
T ss_pred EEEeCCCCCCceEEEecCCCe
Confidence 33 233345678888886443
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=50.52 E-value=2e+02 Score=28.58 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=37.0
Q ss_pred EEEcCCCCEEEEEeC-----C--C----eEEEEEccCceEEEec---CCCc--EEEEEEccCCCEEEEEEcC--------
Q 004298 27 AEWNPEKDLLAMATE-----D--S----KILLHRFNWQRLWTIS---PGKS--VTSLCWRPDGKAIAVGLED-------- 82 (763)
Q Consensus 27 l~~sP~~~lLA~~s~-----D--g----~V~v~~l~~~~v~~~~---~~~~--V~~l~wspDG~~Lasg~~D-------- 82 (763)
.....++.+++.|+. . . .+.+|+...+. |... +... ..+.. -+++.++.|+.+
T Consensus 40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~ 116 (315)
T 4asc_A 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WLGMPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCL 116 (315)
T ss_dssp EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EEECCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBC
T ss_pred EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-EEECCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCccc
Confidence 334457788888873 1 1 25666664333 4332 1111 11222 277888888743
Q ss_pred CcEEEEEccCCeEE
Q 004298 83 GTITLHDVENGKLL 96 (763)
Q Consensus 83 g~V~lwdve~g~~~ 96 (763)
..+.+||..+++..
T Consensus 117 ~~~~~~d~~~~~W~ 130 (315)
T 4asc_A 117 DSVMCYDRLSFKWG 130 (315)
T ss_dssp CCEEEEETTTTEEE
T ss_pred ceEEEECCCCCcEe
Confidence 45889999877643
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=48.75 E-value=20 Score=37.46 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=44.9
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEecCC--CcEEEEEE--cc-CCCEEEEE-EcCCcEEEEEccCCeEEEEe
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTISPG--KSVTSLCW--RP-DGKAIAVG-LEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~--~~V~~l~w--sp-DG~~Lasg-~~Dg~V~lwdve~g~~~~~l 99 (763)
+++.+++.||.|.-.+. +|+.+|++..+ .++....- .+ +|..+++. ..||.+..++.++|.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 57888999999999997 89999999754 22222110 01 33444444 58999999998888655443
No 319
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.79 E-value=45 Score=37.67 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEEccCceEEEe---cCCCcEEEEEEccCCCEEEEE
Q 004298 24 IKIAEWNPEKDLLAMATED------------SKILLHRFNWQRLWTI---SPGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D------------g~V~v~~l~~~~v~~~---~~~~~V~~l~wspDG~~Lasg 79 (763)
...|+|+|.|++++.-..+ ..+.+.......+..+ ..+.+++.++|+|||+.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999976654322 2355555543344443 356789999999999988765
No 320
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=44.92 E-value=3.6e+02 Score=30.29 Aligned_cols=112 Identities=8% Similarity=-0.121 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEE-c-CCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGL-E-DGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~-~-Dg~V~lwdve~g~~~~ 97 (763)
....+++.+.+. +..+-...+.|.+.+++|.....+ .......+|++.|.+..|..+. . .+.|...++. |....
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~ 163 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRF 163 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceE
Confidence 367899998554 555555678999999987644333 2345577899999655554444 2 4567666665 43333
Q ss_pred Ee-cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SL-KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l-~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+ ...-.....|++.+++..+..+. ...+.|...+...
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD-----~~~~~I~~~~~dG 202 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWAD-----AKLNFIHKSNLDG 202 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEE-----TTTCCEEEESSSC
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEe-----CCCCeEEEecCCC
Confidence 32 22234678899998655443331 1355666666543
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=44.12 E-value=2.4e+02 Score=27.71 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=35.6
Q ss_pred CEEEEEeCC--CeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCeEEE
Q 004298 34 DLLAMATED--SKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGKLLR 97 (763)
Q Consensus 34 ~lLA~~s~D--g~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~~~~ 97 (763)
.+++.|+.+ ..+.+|+...++ |... +......-+..-++++++.|+.+ ..+.+||..+++...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS-WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE-EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCC-EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence 455566543 568888874433 3322 11111111112377888888865 678899988876543
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=44.05 E-value=1.2e+02 Score=32.78 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=34.2
Q ss_pred CCeEEEEEcCC----CCEEEEEeC------------CCeEEEEEccC--------ceEEE-ecC--CCcEEEEEEccCCC
Q 004298 22 SQIKIAEWNPE----KDLLAMATE------------DSKILLHRFNW--------QRLWT-ISP--GKSVTSLCWRPDGK 74 (763)
Q Consensus 22 ~~V~~l~~sP~----~~lLA~~s~------------Dg~V~v~~l~~--------~~v~~-~~~--~~~V~~l~wspDG~ 74 (763)
.....++|+|+ +.+.++-+. ...|.-++.+. +.++. +.. ......|+|.|||+
T Consensus 77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~ 156 (454)
T 1cru_A 77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK 156 (454)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence 45678999994 555555432 12344444422 12332 221 24578999999998
Q ss_pred EEEEEE
Q 004298 75 AIAVGL 80 (763)
Q Consensus 75 ~Lasg~ 80 (763)
+.++.+
T Consensus 157 Lyv~~G 162 (454)
T 1cru_A 157 IYYTIG 162 (454)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666644
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=43.23 E-value=1.3e+02 Score=36.96 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=50.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE---EecCCCcEEEEEEccC------CCEEEEEEc-CCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLW---TISPGKSVTSLCWRPD------GKAIAVGLE-DGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~---~~~~~~~V~~l~wspD------G~~Lasg~~-Dg~V~lwdve~ 92 (763)
.|...+.+. .+++.++ .+.+.++.++...+. ...-...|.|+++.|. ++++|+|+. |++|+|+++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 366666553 4566665 577877777422222 2223568999999863 469999996 99999999988
Q ss_pred CeEEEEe
Q 004298 93 GKLLRSL 99 (763)
Q Consensus 93 g~~~~~l 99 (763)
-+.+...
T Consensus 592 l~~~~~~ 598 (1158)
T 3ei3_A 592 FELLHKE 598 (1158)
T ss_dssp CCEEEEE
T ss_pred CCeEEEE
Confidence 7766543
No 324
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=43.11 E-value=3.3e+02 Score=30.69 Aligned_cols=96 Identities=8% Similarity=-0.026 Sum_probs=60.4
Q ss_pred CeEEEEEcCCCCEEEE-EeCCCeEEEEEccCceEEEe-cCC-CcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEWNPEKDLLAM-ATEDSKILLHRFNWQRLWTI-SPG-KSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~-~s~Dg~V~v~~l~~~~v~~~-~~~-~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~ 98 (763)
.+..++|+|....+.. -..++.|..++++|..+-.+ ..+ .....+++.+.+..|..+ ...+.|.+.+........-
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l 117 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence 4778999997655554 45568888888877543333 223 356789998866655444 4678899998764322222
Q ss_pred ecccCCceeEEEeecCCCce
Q 004298 99 LKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l 118 (763)
+...-.....|+..|....+
T Consensus 118 ~~~~l~~P~~iavdp~~G~l 137 (628)
T 4a0p_A 118 VWKDLDSPRALALDPAEGFM 137 (628)
T ss_dssp ECSSCCCEEEEEEETTTTEE
T ss_pred EeCCCCCcccEEEccCCCeE
Confidence 22333567889999854333
No 325
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.06 E-value=1.6e+02 Score=35.32 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=34.2
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+.+++..+|..++.+-+.|+++|+|++.+|+++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 47788888999999999999999999999999988764
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=42.70 E-value=22 Score=39.72 Aligned_cols=117 Identities=10% Similarity=-0.067 Sum_probs=65.7
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC----CCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR----IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~----~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.....+..+|||++++.++. .+.++.+++.... ..++.. .........+.....+...++++++...+
T Consensus 323 ksPHGv~vsPDGkyi~v~GK-----LsptvtV~d~~k~~~~~~~k~~~---~~~~~~ae~e~GlGPlHt~Fd~~G~aYTt 394 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGK-----LSPTCSMIAIDKLPDLFAGKLAD---PRDVIVGEPELGLGPLHTTFDGRGNAYTT 394 (638)
T ss_dssp SSCCCEEECTTSCEEEEECT-----TSSBEEEEEGGGHHHHHTTCCSC---GGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred CCCcceeeCCCCCEEEEcCC-----CCCeEEEEEeehhhhhhhccccC---cccceEeeccCCCcccEEEECCCCceEee
Confidence 44567889999998876652 4666777665431 000000 00011111122233445566788888888
Q ss_pred EcCCCcEEEEEcCc-----------eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 180 GDKDGSICFNIFGI-----------FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 180 gs~DG~I~lw~~~~-----------~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
-.-|..|.-|.++. ..+.+++++-.++|..+.... .-.+||++|++...
T Consensus 395 lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~ge-------------t~~~dGk~lv~lnK 454 (638)
T 3sbq_A 395 LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCE-------------TNEADGKWLVALSK 454 (638)
T ss_dssp ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT-------------STTCCSCEEEEEES
T ss_pred eeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCc-------------cCCCCccEEEEecc
Confidence 88999999997654 245566666555554322211 12567777777654
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=41.62 E-value=2.9e+02 Score=34.70 Aligned_cols=80 Identities=14% Similarity=0.242 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC--ce--EEEec---CCCcEEEEEEccCCCEEEEEE-------cCCcEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW--QR--LWTIS---PGKSVTSLCWRPDGKAIAVGL-------EDGTIT 86 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~--v~~~~---~~~~V~~l~wspDG~~Lasg~-------~Dg~V~ 86 (763)
+.+|.-..|-. -+.|+..+ +..|+-|++.| ++ ++.-. .+..|..-+-++|++.++..| -.|.+.
T Consensus 105 ~e~VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQ 182 (1630)
T 1xi4_A 105 TDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (1630)
T ss_pred CCCceEEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceee
Confidence 44588888863 35566666 45688999854 22 22211 245677888888999777544 347889
Q ss_pred EEEccCCeEEEEecccC
Q 004298 87 LHDVENGKLLRSLKSHT 103 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~ 103 (763)
+|+++.+ .-..+.+|.
T Consensus 183 LyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 183 LYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred eeecccc-cchhhhHhH
Confidence 9998743 333344553
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=41.26 E-value=57 Score=31.90 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=54.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec-----C--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS-----P--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~-----~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.++.|.|+|.+.|+ .||.|.-++- ++..-|... . -+.+..|.+.|+|.+-|+. ||.++-+...++..
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~ 166 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQ 166 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTT
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCC
Confidence 67899999999998 4587754444 333333211 1 1468999999999988888 77754333222110
Q ss_pred ------EEEe-cccCCceeEEEeecCCCceec
Q 004298 96 ------LRSL-KSHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 96 ------~~~l-~~h~~~V~~l~ws~~~~~l~s 120 (763)
...+ ......-..+.|.+++...+.
T Consensus 167 ~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v 198 (236)
T 1tl2_A 167 DNWLARATKIGQGGWDTFKFLFFSSVGTLFGV 198 (236)
T ss_dssp CCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred cccccccceeccCCcceEEEEEECCCCcEEEE
Confidence 1111 122234445668888765544
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=40.91 E-value=2.7e+02 Score=27.30 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCceEEEe-c---CCC-cEEEEEEccCCCEEEEEEcCC-----cEEEEEccCCeEE
Q 004298 32 EKDLLAMATEDS-----KILLHRFNWQRLWTI-S---PGK-SVTSLCWRPDGKAIAVGLEDG-----TITLHDVENGKLL 96 (763)
Q Consensus 32 ~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~-~---~~~-~V~~l~wspDG~~Lasg~~Dg-----~V~lwdve~g~~~ 96 (763)
++.+++.|+.++ .+.+|+...+. |.. . ... ...+.. -++++++.|+.++ .+.+||..+++..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 566777766443 47777774332 332 2 111 112222 2788888888654 5778888877654
Q ss_pred E
Q 004298 97 R 97 (763)
Q Consensus 97 ~ 97 (763)
.
T Consensus 138 ~ 138 (302)
T 2xn4_A 138 H 138 (302)
T ss_dssp E
T ss_pred e
Confidence 3
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=39.86 E-value=1.7e+02 Score=29.01 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCCEEEEEeC----C-----CeEEEEEccCceEEEec----CCC-cEEEEEEccCCCEEEEEEcC-----CcEEEEEccC
Q 004298 32 EKDLLAMATE----D-----SKILLHRFNWQRLWTIS----PGK-SVTSLCWRPDGKAIAVGLED-----GTITLHDVEN 92 (763)
Q Consensus 32 ~~~lLA~~s~----D-----g~V~v~~l~~~~v~~~~----~~~-~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~ 92 (763)
++.+++.|+. + ..+.+|++..+. |... ... ...+..+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTE-EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCe-EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666666665 2 356777774333 3322 111 1222222 78888888744 4688899887
Q ss_pred CeEE
Q 004298 93 GKLL 96 (763)
Q Consensus 93 g~~~ 96 (763)
++..
T Consensus 147 ~~W~ 150 (308)
T 1zgk_A 147 DEWH 150 (308)
T ss_dssp TEEE
T ss_pred CeEe
Confidence 7644
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=39.21 E-value=3.9e+02 Score=33.61 Aligned_cols=114 Identities=10% Similarity=0.103 Sum_probs=69.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEeccc-
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSLKSH- 102 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l~~h- 102 (763)
+.--||..+.+|.=+ ..++.|+++ ..+++....-...|.--+|-.+.. |+..+ +..|.-|+++. ..+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 345688888888765 678999999 666777766566677677765543 33332 56799999973 3444444444
Q ss_pred ---CCceeEEEeecCCCceeccCC-CCCcccCCceeecCCCCCC
Q 004298 103 ---TVAVVCLNWEEDAQPSKNDFG-NIPTYEDRTSRFFPPAPRI 142 (763)
Q Consensus 103 ---~~~V~~l~ws~~~~~l~s~s~-~~~~~~d~~i~~wd~~~~~ 142 (763)
...|..-.-+++.++++..+- .....-.|.+.++....+.
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 245555555666666543221 0001134677777766543
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=38.95 E-value=55 Score=34.32 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCEEEEE-eCCCeEEEEEcc--Cc----eEEEecCCCcEEEEEEcc-CCCEEEEEEcC-CcEEEEEcc--C
Q 004298 24 IKIAEWNPEKDLLAMA-TEDSKILLHRFN--WQ----RLWTISPGKSVTSLCWRP-DGKAIAVGLED-GTITLHDVE--N 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~-s~Dg~V~v~~l~--~~----~v~~~~~~~~V~~l~wsp-DG~~Lasg~~D-g~V~lwdve--~ 92 (763)
-..++|||+++.+.++ +..+.|+.|+++ +. +++ ..+...-.++..+ +|++.+++..+ +.|..|+.+ .
T Consensus 223 pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~ 300 (355)
T 3sre_A 223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPP 300 (355)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCC
T ss_pred cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCC
Confidence 4679999999766655 456889999984 32 233 2345678899999 59877766544 455555544 2
Q ss_pred CeEEEEecc---cCCceeEEEeecCCCc
Q 004298 93 GKLLRSLKS---HTVAVVCLNWEEDAQP 117 (763)
Q Consensus 93 g~~~~~l~~---h~~~V~~l~ws~~~~~ 117 (763)
+..+..++. ....|.++ |..+|+.
T Consensus 301 ~s~v~rI~~~~~~~~~v~~v-~~ddG~~ 327 (355)
T 3sre_A 301 GSEVLRIQDILSEEPKVTVV-YAENGTV 327 (355)
T ss_dssp CEEEEEEECTTSSSCEEEEE-EEECSSS
T ss_pred CCEEEEEEccCCCCcEEEEE-EEcCCCE
Confidence 455555442 12334433 4445543
No 333
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=37.76 E-value=2.9e+02 Score=29.82 Aligned_cols=99 Identities=11% Similarity=0.017 Sum_probs=57.6
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCc----eEEEec----C------CCcEEEEEEccC----CCEEEEEEc--C
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQ----RLWTIS----P------GKSVTSLCWRPD----GKAIAVGLE--D 82 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~----~v~~~~----~------~~~V~~l~wspD----G~~Lasg~~--D 82 (763)
-+.|+|.|+++ .+.++...|.|++++.++. .+..+. . ..-...|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 46799999996 4555677899999876543 233332 1 235788999996 443333221 1
Q ss_pred C----------cEEEEEccC----------CeEEEEec--ccCCceeEEEeecCCCceeccC
Q 004298 83 G----------TITLHDVEN----------GKLLRSLK--SHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 g----------~V~lwdve~----------g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+ .|.-|.+.. .+.+..+. ........|.|.|||.+.++.+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1 233344432 23333332 1122467899999998666554
No 334
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=37.03 E-value=1.2e+02 Score=31.40 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=55.3
Q ss_pred eEEEEEcC-CCCEEEEEeCCCe--------EEEEEccC-----------------ceEEEecCCCcEEEEEEccCCCEEE
Q 004298 24 IKIAEWNP-EKDLLAMATEDSK--------ILLHRFNW-----------------QRLWTISPGKSVTSLCWRPDGKAIA 77 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~--------V~v~~l~~-----------------~~v~~~~~~~~V~~l~wspDG~~La 77 (763)
...++|+| ++.+.++-...+. |.+....+ ..++.+.+......++| .+|++++
T Consensus 204 p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v 282 (352)
T 2ism_A 204 PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYV 282 (352)
T ss_dssp ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEE
T ss_pred cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEE
Confidence 35688999 6777766443333 33222111 12333333344667777 5787777
Q ss_pred EEEcCCcEEEEEccCCe----E--EEEecccCCceeEEEeecCCCceecc
Q 004298 78 VGLEDGTITLHDVENGK----L--LRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 78 sg~~Dg~V~lwdve~g~----~--~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
+....+.|...+++... . ...+-.....+..+++.|+|...++.
T Consensus 283 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 283 AGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 66677888888776432 1 12221223578999999999765554
No 335
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=36.90 E-value=3.7e+02 Score=30.24 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEcc-CCCEEEEEEcCC--cEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRP-DGKAIAVGLEDG--TITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wsp-DG~~Lasg~~Dg--~V~lwdve~g~~~ 96 (763)
.+..+++.+.+. +..+-+..+.|.+.+++|.....+. ......+|++.| .|.++.+-.... .|...++. |...
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~ 468 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTER 468 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSC
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCc
Confidence 467899988755 5556667789999999887554443 345789999999 676666655444 45555554 4433
Q ss_pred EEe-cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 97 RSL-KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 97 ~~l-~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
..+ ...-...+.|+..+.+..+..+. ...+.|...+..
T Consensus 469 ~~l~~~~l~~P~gla~D~~~~~LYw~D-----~~~~~I~~~~~d 507 (628)
T 4a0p_A 469 EVLFFSGLSKPIALALDSRLGKLFWAD-----SDLRRIESSDLS 507 (628)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETT
T ss_pred EEEEeccCCCccEEEEeCCCCEEEEEe-----CCCCEEEEEeCC
Confidence 333 22234568888888755443321 034455555543
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=36.43 E-value=2.4e+02 Score=28.55 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=26.8
Q ss_pred CCCEEEEEeC-C---------CeEEEEEccCceEEEec-C---CCcEEEEEEccCCCEEEEEEcC
Q 004298 32 EKDLLAMATE-D---------SKILLHRFNWQRLWTIS-P---GKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 32 ~~~lLA~~s~-D---------g~V~v~~l~~~~v~~~~-~---~~~V~~l~wspDG~~Lasg~~D 82 (763)
++.+++.|+. + ..+.+|++.... |... + ......-+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS-WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTE-EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc-EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 5667777665 2 357777774332 4332 1 2111111222688888998854
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.87 E-value=1.1e+02 Score=36.73 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI 58 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~ 58 (763)
+..+.+++..++..++.+.+.|+++++|++ +++.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 345778888888899999999999999998 66666654
No 338
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=35.80 E-value=1.1e+02 Score=30.72 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=35.2
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCceEEEec----CCC-cEEEEEEccCCCEEEEEEcC-----CcEEEEEccCCeEE
Q 004298 32 EKDLLAMATED-----SKILLHRFNWQRLWTIS----PGK-SVTSLCWRPDGKAIAVGLED-----GTITLHDVENGKLL 96 (763)
Q Consensus 32 ~~~lLA~~s~D-----g~V~v~~l~~~~v~~~~----~~~-~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~g~~~ 96 (763)
++.+++.|+.+ ..+.+|++.... |... ... ...+..+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 56666666533 357777774332 3322 111 1122222 77888888754 45889998877544
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=34.41 E-value=3.5e+02 Score=26.74 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=36.5
Q ss_pred EEcCCCCEEEEEeC----CC-------eEEEEEccCceEEEec---CCC--cEEEEEEccCCCEEEEEEcC-------Cc
Q 004298 28 EWNPEKDLLAMATE----DS-------KILLHRFNWQRLWTIS---PGK--SVTSLCWRPDGKAIAVGLED-------GT 84 (763)
Q Consensus 28 ~~sP~~~lLA~~s~----Dg-------~V~v~~l~~~~v~~~~---~~~--~V~~l~wspDG~~Lasg~~D-------g~ 84 (763)
....++.+++.|+. ++ .+.+|+.... .|... +.. ...+..+ ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTT-EEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCC-cEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccce
Confidence 34557788888873 12 1556666332 34332 111 1122222 77888888854 34
Q ss_pred EEEEEccCCeEEE
Q 004298 85 ITLHDVENGKLLR 97 (763)
Q Consensus 85 V~lwdve~g~~~~ 97 (763)
+.+||..+++...
T Consensus 129 ~~~yd~~~~~W~~ 141 (318)
T 2woz_A 129 VLCYDPVAAKWSE 141 (318)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCCEeE
Confidence 7888988776543
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=32.86 E-value=2.7e+02 Score=27.65 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=35.1
Q ss_pred CCCEEEEEeCC-------CeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEc------CCcEEEEEccCCeE
Q 004298 32 EKDLLAMATED-------SKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLE------DGTITLHDVENGKL 95 (763)
Q Consensus 32 ~~~lLA~~s~D-------g~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~------Dg~V~lwdve~g~~ 95 (763)
++.+++.|+.+ ..+.+|+.... .|... +......-+...++++++.|+. -..+.+||..+++.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAA-KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTT-EEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCC-CEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56677777653 24666766433 23321 1111111112257888888874 24589999988764
Q ss_pred E
Q 004298 96 L 96 (763)
Q Consensus 96 ~ 96 (763)
.
T Consensus 188 ~ 188 (318)
T 2woz_A 188 K 188 (318)
T ss_dssp E
T ss_pred E
Confidence 4
No 341
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.43 E-value=1.3e+02 Score=36.86 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=32.9
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+.+++..++.+++++-+.|+++|+|++.+|+++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 35566777888999999999999999999999998754
No 342
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.67 E-value=1.5e+02 Score=34.19 Aligned_cols=36 Identities=8% Similarity=0.197 Sum_probs=29.9
Q ss_pred EEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 64 V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
|.++.+ +.+++++-+.|.++|+|++.+++++.+..-
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555544 578999999999999999999999887654
No 343
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.02 E-value=1.6e+02 Score=32.89 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEE
Q 004298 24 IKIAEWNPEKDLLAMATED------------SKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D------------g~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~ 80 (763)
...+.|.++|.+.+..... ..|+.++.....+..+. .+.+++.++|+||++.|.++-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 5679999999887743211 13444444333444433 356799999999999888774
No 344
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=28.39 E-value=1.1e+02 Score=31.53 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=51.3
Q ss_pred CeEEEEEcCC----CCEEEEEeC-------CCeEEEEEccCc--------eEEEecC-----CCcEEEEEEccCCCEEEE
Q 004298 23 QIKIAEWNPE----KDLLAMATE-------DSKILLHRFNWQ--------RLWTISP-----GKSVTSLCWRPDGKAIAV 78 (763)
Q Consensus 23 ~V~~l~~sP~----~~lLA~~s~-------Dg~V~v~~l~~~--------~v~~~~~-----~~~V~~l~wspDG~~Las 78 (763)
....++|+|+ +.+.++-+. ...|..|+++.. .++...+ ......|+|.|||.+.++
T Consensus 67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 146 (353)
T 2g8s_A 67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA 146 (353)
T ss_dssp SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEE
T ss_pred CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEE
Confidence 4688999995 555555333 234555555321 2222211 122467999999965554
Q ss_pred EEcC-------------CcEEEEEccCCeE-------------EEEe-cccCCceeEEEeec-CCCceec
Q 004298 79 GLED-------------GTITLHDVENGKL-------------LRSL-KSHTVAVVCLNWEE-DAQPSKN 120 (763)
Q Consensus 79 g~~D-------------g~V~lwdve~g~~-------------~~~l-~~h~~~V~~l~ws~-~~~~l~s 120 (763)
-+.. |.|.-++.. |+. ...+ .+| .....++|.| ++.+.++
T Consensus 147 ~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 147 LGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp ECCTTCGGGGGCTTSCTTEEEEEETT-SCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred ECCCCCCCccCCCCCCCeEEEEECCC-CCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 4332 456556654 321 1111 122 3467899999 6665554
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=27.52 E-value=7.2e+02 Score=28.17 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=59.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-C------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-P------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.|.++.-.+++.+.+ ++.+| |..|+....+...+. + ...|.++...++|..|-+|.. +-+..++..+++.
T Consensus 147 ~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 478888887777665 55544 667776554443332 1 234889988888876666664 4577889877754
Q ss_pred EEEecccCCceeEEEeecCCCceec
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s 120 (763)
..........|.++.-..+|...+.
T Consensus 224 ~~~~~l~~~~i~~i~~d~~g~lWig 248 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDGNGDLLAG 248 (758)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEE
T ss_pred EeccCCCCCeEEEEEEcCCCCEEEE
Confidence 3221112345788877777765543
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=26.47 E-value=2.2e+02 Score=32.57 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCCEEEEEeCCC------eEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCC--cEEEEEccCCeEEEEe
Q 004298 32 EKDLLAMATEDS------KILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDG--TITLHDVENGKLLRSL 99 (763)
Q Consensus 32 ~~~lLA~~s~Dg------~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg--~V~lwdve~g~~~~~l 99 (763)
++.+++.|+.++ .+.+|+.... .|... ....-.+.+.-.+|++++.|+.++ .+.+||..+++....-
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 677777776442 4677777432 34332 112222333334889999998655 7999999887654322
Q ss_pred c-----ccCCceeEEEeecC-CCceeccC
Q 004298 100 K-----SHTVAVVCLNWEED-AQPSKNDF 122 (763)
Q Consensus 100 ~-----~h~~~V~~l~ws~~-~~~l~s~s 122 (763)
. .....-.++.+..+ +..++.|+
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 1 11122233555554 55666665
No 347
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=26.06 E-value=5.4e+02 Score=26.24 Aligned_cols=97 Identities=6% Similarity=0.006 Sum_probs=59.6
Q ss_pred EEEEEcC-CCCEEEEEeCCC---eEEEEEccC-----------------ceEEEe-cCCCcEEEEEE-------ccCCCE
Q 004298 25 KIAEWNP-EKDLLAMATEDS---KILLHRFNW-----------------QRLWTI-SPGKSVTSLCW-------RPDGKA 75 (763)
Q Consensus 25 ~~l~~sP-~~~lLA~~s~Dg---~V~v~~l~~-----------------~~v~~~-~~~~~V~~l~w-------spDG~~ 75 (763)
..++|+| ++++.++-...+ .|.+....+ ..++.+ ........++| ..+|++
T Consensus 200 ~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l 279 (354)
T 3a9g_A 200 QGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWL 279 (354)
T ss_dssp CEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEE
T ss_pred ceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcE
Confidence 5689999 777776643322 243332211 133444 23456788888 367877
Q ss_pred EEEEEcCCcEEEEEccC-CeEE--EEec-ccCCceeEEEeecCCCceecc
Q 004298 76 IAVGLEDGTITLHDVEN-GKLL--RSLK-SHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~-g~~~--~~l~-~h~~~V~~l~ws~~~~~l~s~ 121 (763)
+++....+.|...+++. ++.. ..+. .....+..+++.|+|.+.++.
T Consensus 280 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 280 LIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 77777788898888874 3332 2332 223578999999999765554
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=21.38 E-value=7.2e+02 Score=28.10 Aligned_cols=106 Identities=8% Similarity=-0.031 Sum_probs=53.5
Q ss_pred CCCCEEEEEeCC----CeEEEEEcc---CceEE-Ee-----cCCCc-EEEEEEccCCCEEEEEEcC------CcEEEEEc
Q 004298 31 PEKDLLAMATED----SKILLHRFN---WQRLW-TI-----SPGKS-VTSLCWRPDGKAIAVGLED------GTITLHDV 90 (763)
Q Consensus 31 P~~~lLA~~s~D----g~V~v~~l~---~~~v~-~~-----~~~~~-V~~l~wspDG~~Lasg~~D------g~V~lwdv 90 (763)
-++.+++.|+.+ ..+.+|+.. |..+. .. ..... ..+..+..+|++++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 357788873 33333 21 11111 2333333388888888854 35788998
Q ss_pred cCCeEEEEecccCCce-eEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKLLRSLKSHTVAV-VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V-~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+++....-....... .++....++...+.|+.+. .+.+.+||...
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~----~~~v~~yd~~t 522 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE----GPAMLLYNVTE 522 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS----SCSEEEEETTT
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC----CCCEEEEECCC
Confidence 8765443211111111 1222223667666665211 11566666554
No 349
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=21.12 E-value=2.1e+02 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004298 412 EKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLL 451 (763)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~f~~F~~WL~ 451 (763)
...+....+..-.++.++-.++..++.+.-.|..|.+=+|
T Consensus 126 R~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY 165 (268)
T 3id6_A 126 RRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWY 165 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666677888999999999999999999999998333
Done!