Query 004299
Match_columns 763
No_of_seqs 344 out of 2083
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ied_A Heat shock protein; HSP 99.9 5.9E-24 2E-28 220.5 12.5 164 244-424 41-268 (272)
2 3peh_A Endoplasmin homolog; st 99.9 1.1E-23 3.8E-28 221.5 12.8 167 244-425 40-228 (281)
3 3nmq_A Heat shock protein HSP 99.9 5.4E-24 1.8E-28 219.7 10.1 166 245-425 34-219 (239)
4 1y4s_A Chaperone protein HTPG; 99.9 9.6E-21 3.3E-25 216.1 23.6 161 255-424 28-209 (559)
5 1qy5_A Endoplasmin; GRP94, NEC 99.9 5.1E-22 1.8E-26 208.4 9.4 165 245-425 23-213 (269)
6 3o0i_A HSP90AA1 protein; HSP90 99.8 1.8E-21 6.1E-26 202.7 10.2 159 256-425 62-240 (256)
7 3t0h_A Heat shock protein HSP 99.8 4E-21 1.4E-25 197.3 10.9 160 255-425 33-212 (228)
8 2cg9_A ATP-dependent molecular 99.8 1.5E-20 5.2E-25 217.8 14.3 166 245-425 21-207 (677)
9 2gqp_A Endoplasmin; GRP94, HSP 99.8 2.6E-20 8.8E-25 192.0 12.4 159 255-425 33-217 (236)
10 2wer_A ATP-dependent molecular 99.8 1E-19 3.4E-24 185.3 12.4 159 255-424 27-206 (220)
11 1yc1_A HSP 86, heat shock prot 99.8 8.7E-20 3E-24 191.1 11.9 159 255-424 69-247 (264)
12 2ioq_A Chaperone protein HTPG; 99.8 4.9E-20 1.7E-24 212.6 9.8 168 244-424 21-209 (624)
13 2o1u_A Endoplasmin; GRP94, HSP 99.8 8.4E-20 2.9E-24 211.5 11.7 165 244-424 39-229 (666)
14 2ior_A Chaperone protein HTPG; 99.8 3.6E-19 1.2E-23 183.2 9.8 161 255-424 48-229 (235)
15 2e61_A Zinc finger CW-type PWW 99.6 9.4E-17 3.2E-21 136.1 5.1 55 646-700 9-67 (69)
16 2l7p_A Histone-lysine N-methyl 99.5 3.9E-16 1.3E-20 140.7 0.1 58 646-703 19-79 (100)
17 1b63_A MUTL; DNA mismatch repa 99.3 5E-12 1.7E-16 136.1 11.8 136 237-396 6-150 (333)
18 3h4l_A DNA mismatch repair pro 99.2 1.5E-11 5.1E-16 134.3 9.2 137 238-396 8-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.2 2.9E-11 1E-15 131.9 8.4 136 239-396 18-160 (365)
20 3na3_A DNA mismatch repair pro 99.1 1.2E-10 4.2E-15 126.3 9.0 138 237-396 10-154 (348)
21 1ei1_A DNA gyrase B, GYRB; ATP 99.0 8.3E-09 2.8E-13 113.6 16.6 108 233-361 14-137 (391)
22 1kij_A DNA gyrase subunit B; t 98.9 2E-08 6.8E-13 110.5 16.2 110 234-361 14-135 (390)
23 3fv5_A DNA topoisomerase 4 sub 98.8 9E-09 3.1E-13 103.7 9.4 119 256-397 19-155 (201)
24 3cwv_A DNA gyrase, B subunit, 98.8 1.1E-07 3.9E-12 103.9 16.9 85 255-362 31-121 (369)
25 1zxm_A TOPO IIA ATPase, DNA to 98.7 7.7E-08 2.6E-12 106.2 12.6 93 255-360 53-156 (400)
26 1s16_A Topoisomerase IV subuni 98.6 2.1E-07 7E-12 102.5 11.1 282 257-636 34-361 (390)
27 4duh_A DNA gyrase subunit B; s 98.5 2E-07 6.8E-12 95.3 9.6 138 234-397 16-171 (220)
28 4emv_A DNA topoisomerase IV, B 98.5 4.9E-07 1.7E-11 92.7 11.0 144 232-397 20-178 (226)
29 1mu5_A Type II DNA topoisomera 98.4 9.6E-07 3.3E-11 99.4 11.2 138 254-399 32-179 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.2 1.6E-06 5.4E-11 99.0 8.9 138 254-399 31-178 (530)
31 3lnu_A Topoisomerase IV subuni 98.2 2.6E-06 8.8E-11 94.3 8.3 119 256-397 52-188 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.1 2.7E-06 9.3E-11 98.6 8.1 136 254-398 37-181 (621)
33 1pvg_A DNA topoisomerase II; G 97.8 6.5E-05 2.2E-09 83.4 10.9 127 255-398 65-207 (418)
34 3ttz_A DNA gyrase subunit B; p 97.8 6.9E-05 2.3E-09 75.3 9.2 144 255-445 32-182 (198)
35 1id0_A PHOQ histidine kinase; 97.5 0.00022 7.5E-09 65.5 8.1 85 255-359 45-132 (152)
36 2q8g_A [pyruvate dehydrogenase 97.5 0.00019 6.5E-09 78.3 8.1 99 255-359 244-350 (407)
37 2btz_A Pyruvate dehydrogenase 97.4 0.00027 9.3E-09 76.6 7.9 99 255-359 232-337 (394)
38 2e0a_A Pyruvate dehydrogenase 97.4 0.00029 1E-08 76.4 8.1 99 255-359 231-337 (394)
39 3a0y_A Sensor protein; ATP-LID 97.3 0.00028 9.6E-09 64.4 6.2 84 255-358 48-135 (152)
40 1y8o_A [pyruvate dehydrogenase 97.2 0.0003 1E-08 77.2 6.7 99 255-359 254-361 (419)
41 1bxd_A ENVZ(290-450), protein 97.2 0.00023 7.8E-09 66.4 4.7 87 255-359 48-137 (161)
42 1ysr_A Sensor-type histidine k 97.2 0.00047 1.6E-08 63.4 6.6 87 255-359 47-136 (150)
43 4ew8_A Sensor protein DIVL; si 97.2 0.00069 2.4E-08 67.9 8.3 85 255-359 156-243 (268)
44 3sl2_A Sensor histidine kinase 97.2 0.00025 8.6E-09 67.3 4.7 94 255-360 44-140 (177)
45 1i58_A Chemotaxis protein CHEA 97.2 0.00023 7.8E-09 68.3 4.1 97 255-359 48-176 (189)
46 3jz3_A Sensor protein QSEC; he 97.2 0.00027 9.3E-09 68.4 4.6 84 255-359 118-204 (222)
47 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.0003 1E-08 76.0 5.4 99 255-359 239-360 (388)
48 3d36_A Sporulation kinase B; G 97.1 0.00077 2.6E-08 66.1 7.6 87 255-360 124-213 (244)
49 2c2a_A Sensor histidine kinase 97.1 0.00036 1.2E-08 70.0 5.1 95 255-360 139-236 (258)
50 1r62_A Nitrogen regulation pro 97.1 0.00034 1.2E-08 64.3 4.5 91 255-359 49-147 (160)
51 1th8_A Anti-sigma F factor; SP 97.1 0.00064 2.2E-08 62.6 6.3 87 255-359 40-126 (145)
52 1b3q_A Protein (chemotaxis pro 96.9 0.0011 3.8E-08 71.9 7.0 98 255-360 107-236 (379)
53 3ehg_A Sensor kinase (YOCF pro 96.6 0.0012 4E-08 59.8 3.9 72 255-359 41-115 (128)
54 3ehh_A Sensor kinase (YOCF pro 96.5 0.0027 9.2E-08 61.7 5.7 72 255-359 131-205 (218)
55 3a0r_A Sensor protein; four he 96.5 0.0011 3.7E-08 68.7 2.9 84 255-358 245-332 (349)
56 3zxo_A Redox sensor histidine 96.0 0.0026 8.9E-08 56.8 2.6 70 254-360 43-115 (129)
57 4gfh_A DNA topoisomerase 2; to 95.8 0.039 1.3E-06 68.4 12.2 90 255-358 60-161 (1177)
58 3zxq_A Hypoxia sensor histidin 94.8 0.014 4.9E-07 51.7 3.1 69 255-360 40-111 (124)
59 4fpp_A Phosphotransferase; fou 93.9 0.043 1.5E-06 55.4 4.6 84 255-358 147-235 (247)
60 4gut_A Lysine-specific histone 92.1 0.021 7.3E-07 67.9 -0.9 45 653-697 91-145 (776)
61 3o70_A PHD finger protein 13; 91.3 0.1 3.6E-06 43.7 2.7 32 652-683 30-62 (68)
62 3o7a_A PHD finger protein 13 v 90.2 0.11 3.8E-06 41.0 1.8 32 652-683 15-47 (52)
63 1we9_A PHD finger family prote 89.2 0.2 6.9E-06 40.9 2.7 34 651-684 18-54 (64)
64 1wee_A PHD finger family prote 88.3 0.31 1.1E-05 40.9 3.4 31 653-683 29-61 (72)
65 2lv9_A Histone-lysine N-methyl 88.0 0.26 8.8E-06 44.0 2.8 33 652-684 39-72 (98)
66 3ke6_A Protein RV1364C/MT1410; 87.1 0.76 2.6E-05 50.0 6.4 51 255-314 298-348 (399)
67 2kgg_A Histone demethylase jar 82.7 0.31 1.1E-05 38.5 0.6 35 649-683 12-49 (52)
68 1ixm_A SPO0B, protein (sporula 79.1 1.3 4.3E-05 44.0 3.7 62 258-324 109-170 (192)
69 3kqi_A GRC5, PHD finger protei 77.7 0.56 1.9E-05 39.7 0.6 34 650-683 20-56 (75)
70 1wep_A PHF8; structural genomi 76.2 0.34 1.2E-05 41.4 -1.2 33 651-683 23-58 (79)
71 2rsd_A E3 SUMO-protein ligase 72.7 2 6.8E-05 35.6 2.6 32 652-683 21-60 (68)
72 1wew_A DNA-binding family prot 70.9 1.2 4.2E-05 37.9 1.0 33 651-683 26-67 (78)
73 2k16_A Transcription initiatio 68.9 1.3 4.4E-05 37.1 0.7 32 652-683 30-63 (75)
74 2ri7_A Nucleosome-remodeling f 68.5 0.9 3.1E-05 43.9 -0.4 34 651-684 19-55 (174)
75 2vpb_A Hpygo1, pygopus homolog 68.2 1.9 6.5E-05 35.7 1.5 19 649-667 18-37 (65)
76 1weu_A Inhibitor of growth fam 56.6 4.8 0.00016 35.6 2.1 30 653-683 47-80 (91)
77 1wen_A Inhibitor of growth fam 53.5 6.7 0.00023 32.9 2.4 30 653-683 27-60 (71)
78 1wem_A Death associated transc 52.4 4.1 0.00014 34.2 0.9 32 652-683 27-65 (76)
79 2g6q_A Inhibitor of growth pro 46.6 6.7 0.00023 32.1 1.3 30 653-683 22-55 (62)
80 3pur_A Lysine-specific demethy 45.9 7.5 0.00026 44.3 1.9 36 649-684 52-90 (528)
81 3c6w_A P28ING5, inhibitor of g 45.4 7.5 0.00026 31.4 1.3 30 653-683 20-53 (59)
82 1ow1_A Smart/HDAC1 associated 41.9 13 0.00045 37.2 2.8 29 88-116 128-163 (195)
83 2jmi_A Protein YNG1, ING1 homo 41.3 13 0.00044 32.8 2.3 30 653-683 37-70 (90)
84 3lqh_A Histone-lysine N-methyl 41.3 9.3 0.00032 37.8 1.6 16 653-668 19-34 (183)
85 3kv5_D JMJC domain-containing 38.0 4.7 0.00016 45.6 -1.3 35 650-684 47-84 (488)
86 2vnf_A ING 4, P29ING4, inhibit 36.7 12 0.00042 30.2 1.3 30 653-683 21-54 (60)
87 2xb1_A Pygopus homolog 2, B-ce 36.0 12 0.00041 33.6 1.3 35 649-683 13-56 (105)
88 2kvo_A Photosystem II reaction 33.7 9.9 0.00034 35.2 0.4 16 83-98 86-101 (120)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.4 12 0.00042 33.4 0.2 12 655-666 2-13 (140)
90 1x4i_A Inhibitor of growth pro 26.7 13 0.00044 31.1 -0.1 31 652-683 16-50 (70)
No 1
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=5.9e-24 Score=220.45 Aligned_cols=164 Identities=26% Similarity=0.365 Sum_probs=127.1
Q ss_pred HhhhccccccCHHHHHHHHHHccHHHhhcccccccc--------------------------------------------
Q 004299 244 LQTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------------------------------------------- 279 (763)
Q Consensus 244 L~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------------------------------------------- 279 (763)
.|++++.++ .+|||||+||.||..+.+ +++.
T Consensus 41 ~~slYs~ke----iFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 115 (272)
T 3ied_A 41 VNSLYTDKD----VFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKND 115 (272)
T ss_dssp HHCTTCCTT----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------------------CG
T ss_pred HhhcCCCHH----HHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccccccccccccccccCC
Confidence 477776664 569999999999999877 4331
Q ss_pred cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCCCC---------CCCCCcccccccccccccccc
Q 004299 280 FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRL 349 (763)
Q Consensus 280 ~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~K~---------~~~~~~IGqFGiGfKsAsmrL 349 (763)
...+.|.|.. |+ +..+|+|.|||+||++++|.++| .+++|.+. ..+...|||||+||+|||| +
T Consensus 116 ~~~l~I~I~~--Dk----~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm-V 188 (272)
T 3ied_A 116 IKKLIIKIKP--DK----EKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL-V 188 (272)
T ss_dssp GGGCCEEEEE--ET----TTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG-T
T ss_pred CCCcEEEEEE--eC----CCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec-c
Confidence 1235666653 32 35799999999999999999987 46655211 1357899999999999988 9
Q ss_pred CCeEEEEEeeCCCCceeEEEEEecCCCccEEEcccc--------cCCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCc
Q 004299 350 GKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFN 419 (763)
Q Consensus 350 G~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~s--------~~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~ 419 (763)
|++|+|.|| . ...++.|.+ ++..+|+|.... ...+||+|+|+++++. +++.++.++. |.|||.|.
T Consensus 189 AdkV~V~Sk-~--dd~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~fi 263 (272)
T 3ied_A 189 SNRVEVYTK-K--EDQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEFI 263 (272)
T ss_dssp EEEEEEEEE-S--SSCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTC
T ss_pred CCEEEEEEc-C--CCceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHhCC
Confidence 999999999 3 346888988 566778774332 3568999999999876 7888899866 99999999
Q ss_pred hhhHH
Q 004299 420 KYLIG 424 (763)
Q Consensus 420 s~pI~ 424 (763)
.+||.
T Consensus 264 ~~PI~ 268 (272)
T 3ied_A 264 KFPIE 268 (272)
T ss_dssp CSCEE
T ss_pred CCCeE
Confidence 99885
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.90 E-value=1.1e-23 Score=221.52 Aligned_cols=167 Identities=25% Similarity=0.353 Sum_probs=127.9
Q ss_pred HhhhccccccCHHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHH
Q 004299 244 LQTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 316 (763)
Q Consensus 244 L~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 316 (763)
.+++++.+ ..+|+|||+||+||.++.+++++. ...+.|.|.. ++ +..+|+|.|||+||++++|
T Consensus 40 ~~~lYsn~----~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~--d~----~~~tLtI~DNGiGMt~edL 109 (281)
T 3peh_A 40 VNSLYTQK----EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA--NK----EKNILSITDTGIGMTKVDL 109 (281)
T ss_dssp HHHHTTCG----GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE--ET----TTTEEEEEECSCCCCHHHH
T ss_pred HHhccCCh----HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE--cC----CCcEEEEEeCCCCCCHHHH
Confidence 34545444 477999999999999988776553 1245666652 22 3579999999999999999
Q ss_pred HHhh-hcccCCCC---------CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEccc--
Q 004299 317 VRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-- 384 (763)
Q Consensus 317 ~~~l-~fG~S~K~---------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~-- 384 (763)
.++| .+++|.+. ..+...|||||+||+|||| +|++|+|.||+.+. .++.|.+ .+...+.|...
T Consensus 110 ~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes--~g~g~fti~~~~~ 184 (281)
T 3peh_A 110 INNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWES--TADAKFTIYKDPR 184 (281)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--ETTSCEEEEECTT
T ss_pred HHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEE--CCCccEEEEEcCC
Confidence 9877 46665321 2356899999999999988 99999999999874 5788877 44566766432
Q ss_pred -ccCCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 385 -SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 385 -s~~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
....+||.|+|+++++. +++.++.++. |.|||.|..+||..
T Consensus 185 ~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l 228 (281)
T 3peh_A 185 GATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYL 228 (281)
T ss_dssp CSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEE
T ss_pred CCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEE
Confidence 24568999999999865 7888888865 99999999999964
No 3
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.90 E-value=5.4e-24 Score=219.68 Aligned_cols=166 Identities=23% Similarity=0.282 Sum_probs=125.8
Q ss_pred hhhccccccCHHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHH
Q 004299 245 QTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 317 (763)
Q Consensus 245 ~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~ 317 (763)
+++++.+ ..+|+|||+||+||.++.+++++. ...+.|.|.. ++ +...|+|.|||+||+++++.
T Consensus 34 ~~lYs~~----~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~----~~~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 34 NTFYSNK----EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP--NP----QERTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp HSCCCCT----THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--ET----TTTEEEEEECSCCCCHHHHH
T ss_pred HhccCCc----HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE--eC----CccEEEEEeCCCCCCHHHHH
Confidence 4444444 477999999999999987765442 1245666652 22 35799999999999999998
Q ss_pred Hhh-hcccCCC--------CCCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcccc--c
Q 004299 318 RMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--Y 386 (763)
Q Consensus 318 ~~l-~fG~S~K--------~~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~s--~ 386 (763)
+++ .+++|.+ ...+...|||||+||+||+| +|++|+|.||+.+. .++.|.+ .+..+|+|.... .
T Consensus 104 ~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~g~fti~~~~~~~ 178 (239)
T 3nmq_A 104 NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAGGSFTVRADHGEP 178 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSTTEEEEEECCSSC
T ss_pred HHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCCCcEEEEecCCCc
Confidence 766 4665432 11256899999999999988 99999999999754 5778887 455677774432 3
Q ss_pred CCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 387 YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 387 ~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
..+||.|+|+++++. ++..++.++. |.|||.|..+||..
T Consensus 179 ~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~ 219 (239)
T 3nmq_A 179 IGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITL 219 (239)
T ss_dssp CSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEE
T ss_pred CCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEE
Confidence 368999999999876 7888888865 99999999999863
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.86 E-value=9.6e-21 Score=216.06 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=122.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQ 326 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~ 326 (763)
+..+|+|||+||+||+++.+++++. ...+.|.|.. ++ +..+|+|.|||+||+++++.+++ ++++|.
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~----~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg 101 (559)
T 1y4s_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DK----DKRTLTISDNGVGMTRDEVIDHLGTIAKSG 101 (559)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE--ET----TTTEEEEEECSSCCCHHHHHHHHSCCSCCC
T ss_pred hHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE--eC----CCcEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 3488999999999999887765542 1234555552 21 24799999999999999999987 477775
Q ss_pred CCC----------CCCCccccccccccccccccCCeEEEEEeeCCC-CceeEEEEEecCCCccEEEcccccCCCCcEEEE
Q 004299 327 PDA----------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 395 (763)
Q Consensus 327 K~~----------~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~-~svg~ls~sf~eg~~~i~VPi~s~~~~Gt~I~l 395 (763)
+.. .+...||+||+||+|++| +|++|+|.||+.+. ...++.|.+ ++...+.|...+-..+||.|++
T Consensus 102 ~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~g~~~~~i~~~~~~~~GT~I~L 178 (559)
T 1y4s_A 102 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AGEGEYTVADITKEDRGTEITL 178 (559)
T ss_dssp CCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--CSSSEEEEEEECCCSCEEEEEE
T ss_pred cHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--eCCCeeEEeECCCCCCCeEEEE
Confidence 321 256799999999999888 99999999999874 467888877 4555666643334568999999
Q ss_pred Eeccch-hhhhhhhHHh-HhhhCCCchhhHH
Q 004299 396 DTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 424 (763)
Q Consensus 396 ~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~ 424 (763)
+++++. +++..+.++. |.+||.|.++||.
T Consensus 179 ~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 179 HLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp EECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred EEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 998754 6777788865 8999999998875
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.85 E-value=5.1e-22 Score=208.43 Aligned_cols=165 Identities=21% Similarity=0.325 Sum_probs=123.6
Q ss_pred hhhccccccCHHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHH
Q 004299 245 QTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 317 (763)
Q Consensus 245 ~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~ 317 (763)
+++++.+ ..||+|||+||+||.++.+++++. ...+.|.|.. + .+...|+|.|||+||++++|.
T Consensus 23 ~~lYsn~----eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~--d----~~~~~l~I~DnGiGMt~edl~ 92 (269)
T 1qy5_A 23 NSLYKNK----EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--D----KEKNLLHVTDTGVGMTREELV 92 (269)
T ss_dssp HHHTTCT----THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--E----TTTTEEEEEECSCCCCHHHHH
T ss_pred HhccCCc----hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE--c----CCceEEEEEECCCCCCHHHHH
Confidence 4455444 378999999999999977765442 1245666653 2 135789999999999999998
Q ss_pred Hhh-hcccCCCC-------------CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcc
Q 004299 318 RMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 383 (763)
Q Consensus 318 ~~l-~fG~S~K~-------------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi 383 (763)
++| .+++|.+. ..+...||+||+||++++| +|++|+|.||+.+. .++.|.+ .+ +.+.|..
T Consensus 93 ~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~g-g~~~i~~ 166 (269)
T 1qy5_A 93 KNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFSVIA 166 (269)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS-SCEEEEE
T ss_pred HHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--eC-CEEEEEe
Confidence 877 47766211 0356789999999999988 99999999999874 4777876 45 5676643
Q ss_pred cc---cCCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 384 VS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 384 ~s---~~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
.. -..+||.|+|+++.+. ++...+.++. |.+||.|.++||..
T Consensus 167 ~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l 213 (269)
T 1qy5_A 167 DPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 213 (269)
T ss_dssp CTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEE
T ss_pred ccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEE
Confidence 32 2468999999998764 6777778765 89999999999963
No 6
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.84 E-value=1.8e-21 Score=202.73 Aligned_cols=159 Identities=25% Similarity=0.298 Sum_probs=121.3
Q ss_pred HHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCCC
Q 004299 256 FGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQP 327 (763)
Q Consensus 256 f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~K 327 (763)
..+|+|||+||+||.++.+++++. ...+.|.|.. + .+...|+|.|||+||++++|.+++ ++++|.+
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d----~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~ 135 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP--N----KQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 135 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--E----TTTTEEEEEECSCCCCHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE--c----CCceEEEEecCCCCcCHHHHHHHHHhhccccc
Confidence 477999999999999987765442 1245666652 2 246799999999999999998876 4666532
Q ss_pred C--------CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEccc--ccCCCCcEEEEEe
Q 004299 328 D--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SYYRKGQFMELDT 397 (763)
Q Consensus 328 ~--------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~--s~~~~Gt~I~l~l 397 (763)
. ..+...||+||+||+|+++ ++++|+|.||+.+ ..++.|.+ ++...+.|... .-..+||.|++++
T Consensus 136 ~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~--~~g~~w~s--~gg~~~~v~~~~~~~~~~GT~I~l~L 210 (256)
T 3o0i_A 136 KAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND--DEQYAWES--SAGGSFTVRTDTGEPMGRGTKVILHL 210 (256)
T ss_dssp HHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT--SCEEEEEE--CSTTEEEEEECCSSCCSSEEEEEEEE
T ss_pred cchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC--CceEEEEE--eccceEEEeeCCCCCCCCCcEEEEEE
Confidence 1 1256899999999999988 9999999999976 35888877 44556666432 2346899999999
Q ss_pred ccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 398 VVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 398 k~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
+.+. ++...+.++. |.+||.|..+||..
T Consensus 211 K~~~~e~~e~~~I~~iv~k~s~~l~~PI~~ 240 (256)
T 3o0i_A 211 KEDQTEYLEERRIKEIVKKHSQFIGYPITL 240 (256)
T ss_dssp CGGGGGGGCHHHHHHHHHHHCTTCSSCEEE
T ss_pred cCcchhhccHHHHHHHHHHHHhhCCCCeEE
Confidence 9765 6777777755 99999999998863
No 7
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.84 E-value=4e-21 Score=197.33 Aligned_cols=160 Identities=24% Similarity=0.292 Sum_probs=120.9
Q ss_pred HHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQ 326 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~ 326 (763)
+..+|+|||+||+||+++.+++++. ...+.|.|.. + .+...|+|.|||.||+++++..++ .+++|.
T Consensus 33 ~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~--d----~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~ 106 (228)
T 3t0h_A 33 KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP--N----KQDRTLTIVDTGIGMTKADLINNLGTIAKSG 106 (228)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE--E----TTTTEEEEEECSCCCCHHHHHTGGGSCHHHH
T ss_pred cHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE--e----CCeeEEEEEeCCCCCCHHHHHHHHHhhcccc
Confidence 3578999999999999987665432 1245666652 2 246799999999999999998876 466653
Q ss_pred CC--------CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEccc--ccCCCCcEEEEE
Q 004299 327 PD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SYYRKGQFMELD 396 (763)
Q Consensus 327 K~--------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~--s~~~~Gt~I~l~ 396 (763)
+. ..+...||+||+||+|+++ ++++++|.||+.+ ..|+.|.+ ++...+.|... .-..+||.|+++
T Consensus 107 ~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~--~~~~~w~~--~g~~~~~v~~~~~~~~~~GT~I~v~ 181 (228)
T 3t0h_A 107 TKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND--DEQYAWES--SAGGSFTVRTDTGEPMGRGTKVILH 181 (228)
T ss_dssp HHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT--SCEEEEEE--CSTTEEEEEECCSSCCSSEEEEEEE
T ss_pred chhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCC--CCcEEEEE--cCCceEEEeecCCCCCCCCcEEEEE
Confidence 21 1256899999999999987 9999999999976 35788876 44456666432 234689999999
Q ss_pred eccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 397 TVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 397 lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
++.+. ++...+.++. |.+||.|..+||..
T Consensus 182 Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~ 212 (228)
T 3t0h_A 182 LKEDQTEYLEERRIKEIVKKHSQFIGYPITL 212 (228)
T ss_dssp ECGGGGGGGSHHHHHHHHHHHSTTCSSCEEE
T ss_pred ECCchhhhhhHHHHHHHHHHHHhhCCCCeEE
Confidence 99765 5666677755 99999999998863
No 8
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-20 Score=217.79 Aligned_cols=166 Identities=23% Similarity=0.275 Sum_probs=126.3
Q ss_pred hhhccccccCHHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHH
Q 004299 245 QTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 317 (763)
Q Consensus 245 ~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~ 317 (763)
|++++.+ ..+|+|||+||+||.++.+++++. ...+.|.|.. ++ +..+|+|.|||+||++++|.
T Consensus 21 ~sLYsnk----eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~--d~----~~~~I~I~DnGiGMt~edl~ 90 (677)
T 2cg9_A 21 NTVYSNK----EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP--KP----EQKVLEIRDSGIGMTKAELI 90 (677)
T ss_dssp HSCCSCT----THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE--EG----GGTEEEEEECSCCCCHHHHH
T ss_pred HhCCCCc----hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE--eC----CCCEEEEEECCCCCCHHHHH
Confidence 5555455 377999999999999988776653 1235555552 22 24689999999999999999
Q ss_pred Hhhh-cccCCC------C--CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEccc---c
Q 004299 318 RMTY-FGHKQP------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV---S 385 (763)
Q Consensus 318 ~~l~-fG~S~K------~--~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~---s 385 (763)
++|+ +++|.+ . ..+...|||||+||+||+| ++++|+|.||+.+. .++.|.+ +|...+.|... .
T Consensus 91 ~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~~~ti~~~~~~~ 165 (677)
T 2cg9_A 91 NNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGSFTVTLDEVNE 165 (677)
T ss_dssp GGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSSEEEEEECCSSC
T ss_pred HHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCceEEEeecCCCC
Confidence 9874 666632 1 1256799999999999977 99999999999974 4888877 45556666432 3
Q ss_pred cCCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 386 YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 386 ~~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
-..+||.|+|+++.+. +++..+.++. |.+||.|+++||..
T Consensus 166 ~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 166 RIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp CCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred CCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 4468999999999765 6777888865 89999999999964
No 9
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.82 E-value=2.6e-20 Score=192.04 Aligned_cols=159 Identities=21% Similarity=0.325 Sum_probs=114.6
Q ss_pred HHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQ 326 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~ 326 (763)
+..||+|||+||+||.++.+++.+. ...+.|.|.. ++ +...|+|.|||+||++++|.++| .+|+|.
T Consensus 33 ~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~--d~----~~~~i~I~DnG~GMt~edl~~~l~~ia~Sg 106 (236)
T 2gqp_A 33 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DK----EKNLLHVTDTGVGMTREELVKNLGTIAKSG 106 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--ET----TTTEEEEEECSCCCCHHHHHHHHHCC----
T ss_pred chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE--cC----CCCEEEEEECCcCCCHHHHHHHHhhhcccc
Confidence 4588999999999999976654331 1234555542 21 24689999999999999998877 577764
Q ss_pred CCC-------------CCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcccc---cCCCC
Q 004299 327 PDA-------------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS---YYRKG 390 (763)
Q Consensus 327 K~~-------------~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~s---~~~~G 390 (763)
+.. .+...||+||+||+++++ +|++|+|.||+.+. .++.|.+ ++ ..+.+.... -..+|
T Consensus 107 ~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~--~g-g~~~i~~~~~~~~~~~G 180 (236)
T 2gqp_A 107 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFSVIADPRGNTLGRG 180 (236)
T ss_dssp -----------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCEEEEECTTCSCSSSE
T ss_pred cHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE--eC-CEEEEEeccCCCCCCCC
Confidence 321 244689999999999877 99999999999875 4677766 44 566664322 23579
Q ss_pred cEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHHH
Q 004299 391 QFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 425 (763)
Q Consensus 391 t~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~e 425 (763)
|.|+++++.+. ++...+.++. |.+||+|..+||..
T Consensus 181 T~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~ 217 (236)
T 2gqp_A 181 TTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYV 217 (236)
T ss_dssp EEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEE
T ss_pred eEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEE
Confidence 99999998764 5666677754 99999999999863
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.80 E-value=1e-19 Score=185.29 Aligned_cols=159 Identities=23% Similarity=0.298 Sum_probs=117.1
Q ss_pred HHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQ 326 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~ 326 (763)
+..||+|||+||+||+++.+++++. ...+.|.|.. +. +...|+|.|||.||+++++.+++ .+|+|.
T Consensus 27 ~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~--~~----~~~~i~I~DnG~GMs~edl~~~l~~ia~S~ 100 (220)
T 2wer_A 27 KEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP--KP----EQKVLEIRDSGIGMTKAELINNLGTIAKSG 100 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE--EG----GGTEEEEEECSCCCCHHHHHHHTTTSCCTT
T ss_pred chHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE--CC----CCCEEEEEEcCCCCCHHHHHHHHHhHhccc
Confidence 3588999999999999976544321 1245565552 21 25689999999999999998876 577764
Q ss_pred CC--------CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcccc---cCCCCcEEEE
Q 004299 327 PD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS---YYRKGQFMEL 395 (763)
Q Consensus 327 K~--------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~s---~~~~Gt~I~l 395 (763)
+. ..+...||+||+||+++++ ++++++|.|++.+. .++.|.. .+...+.+.... -..+||.|++
T Consensus 101 ~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~--~~~~~~~i~~~~~~~~~~~GT~I~l 175 (220)
T 2wer_A 101 TKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGSFTVTLDEVNERIGRGTILRL 175 (220)
T ss_dssp HHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSSSEEEEEECSSSCCCSSEEEEEE
T ss_pred chhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEe--CCCCceEeecccCCCCCCCCeEEEE
Confidence 21 1356799999999998876 99999999999874 4777766 333456553322 3457999999
Q ss_pred Eeccch-hhhhhhhHHh-HhhhCCCchhhHH
Q 004299 396 DTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 424 (763)
Q Consensus 396 ~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~ 424 (763)
+++.+. ++...+.+.. |.+|+.|.++||.
T Consensus 176 ~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 176 FLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp EECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred EECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 998654 5566666654 8999999999885
No 11
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.80 E-value=8.7e-20 Score=191.09 Aligned_cols=159 Identities=24% Similarity=0.293 Sum_probs=118.6
Q ss_pred HHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQ 326 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~ 326 (763)
+..||+|||+||+||.++.+++.+. ...+.|.|.. + .+...|+|.|||.||++++|.+++ .+++|.
T Consensus 69 ~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~--d----~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~ 142 (264)
T 1yc1_A 69 KEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP--N----KQDRTLTIVDTGIGMTKADLINNLGTIAKSG 142 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE--E----TTTTEEEEEECSCCCCHHHHHHHHHSCTTSC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE--C----CCeeEEEEEECCcCCCHHHHHHHHHhhcccc
Confidence 5689999999999999976554321 1356666652 2 135789999999999999998876 577764
Q ss_pred CC--------CCCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEccc--ccCCCCcEEEEE
Q 004299 327 PD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SYYRKGQFMELD 396 (763)
Q Consensus 327 K~--------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~--s~~~~Gt~I~l~ 396 (763)
+. ..+...||+||+||+++++ ++++++|.||+.+. .++.|... +...+.+... .-..+||.|+++
T Consensus 143 ~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~~~~~~~~GT~I~l~ 217 (264)
T 1yc1_A 143 TKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTDTGEPMGRGTKVILH 217 (264)
T ss_dssp HHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEECCSSCCSSEEEEEEE
T ss_pred chhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeecCCCCCCCCeEEEEE
Confidence 32 1256799999999999888 99999999999874 47778763 3345555322 123579999999
Q ss_pred eccch-hhhhhhhHHh-HhhhCCCchhhHH
Q 004299 397 TVVQS-EATAKYNLKS-IKEFSPFNKYLIG 424 (763)
Q Consensus 397 lk~~~-e~~~~~~L~~-I~kySpF~s~pI~ 424 (763)
++.+. ++...+.++. |.+||.|.++||.
T Consensus 218 Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 218 LKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp ECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred ECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 98654 5556666654 9999999999886
No 12
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.80 E-value=4.9e-20 Score=212.58 Aligned_cols=168 Identities=23% Similarity=0.321 Sum_probs=124.4
Q ss_pred HhhhccccccCHHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHH
Q 004299 244 LQTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 316 (763)
Q Consensus 244 L~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 316 (763)
.+++++.+ ..||+|||+||+||+++.+++++. ...+.|.|.. ++ +..+|+|.|||+||+++++
T Consensus 21 ~~~lYsn~----~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~--d~----~~~~I~I~DnGiGMt~edl 90 (624)
T 2ioq_A 21 IHSLYSNK----EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DK----DKRTLTISDNGVGMTRDEV 90 (624)
T ss_dssp HHHHSSCT----THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE--ET----TTTEEEEEECSCCCCHHHH
T ss_pred HHhcCCCh----HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE--eC----CCcEEEEEECCCCCCHHHH
Confidence 35555544 478999999999999887765542 1234555552 21 2479999999999999999
Q ss_pred HHhh-hcccCCCC----------CCCCCccccccccccccccccCCeEEEEEeeCCC-CceeEEEEEecCCCccEEEccc
Q 004299 317 VRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGKDNLEIPIV 384 (763)
Q Consensus 317 ~~~l-~fG~S~K~----------~~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~-~svg~ls~sf~eg~~~i~VPi~ 384 (763)
.+++ ++++|.+. ..+...||+||+||+|++| +|++|+|.||+.+. ...++.|.+ ++...+.|...
T Consensus 91 ~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~g~~~~~i~~~ 167 (624)
T 2ioq_A 91 IDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AGEGEYTVADI 167 (624)
T ss_dssp HHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEE--CSSSCCEEEEE
T ss_pred HHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEE--eCCCeEEEEEC
Confidence 9877 47776532 1256799999999999888 99999999999873 467888877 44445555433
Q ss_pred ccCCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHH
Q 004299 385 SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 424 (763)
Q Consensus 385 s~~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~ 424 (763)
.-..+||.|+++++++. +++..+.++. |.+||.|.++||.
T Consensus 168 ~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 168 TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 34468999999998754 6777788865 8999999999875
No 13
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.80 E-value=8.4e-20 Score=211.51 Aligned_cols=165 Identities=21% Similarity=0.336 Sum_probs=112.4
Q ss_pred HhhhccccccCHHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHH
Q 004299 244 LQTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 316 (763)
Q Consensus 244 L~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 316 (763)
.+++++.+ ..+|+|||+||+||.++.+++++. ...+.|.|.. ++ +..+|+|.|||+||+++++
T Consensus 39 ~~sLYsn~----eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~--d~----~~~~I~I~DnGiGMt~edl 108 (666)
T 2o1u_A 39 INSLYKNK----EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DK----EKNLLHVTDTGVGMTREEL 108 (666)
T ss_dssp TTTTSSSC----TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE--ET----TTTEEEEEECSCCCCHHHH
T ss_pred HHhccCCc----hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE--eC----CCCEEEEEECCCCCCHHHH
Confidence 35555555 377999999999999887776553 1235566552 21 2478999999999999999
Q ss_pred HHhh-hcccCCCC------C-------CCCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEc
Q 004299 317 VRMT-YFGHKQPD------A-------DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP 382 (763)
Q Consensus 317 ~~~l-~fG~S~K~------~-------~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VP 382 (763)
.++| ++++|.+. . .+...||+||+||+|++| +|++|+|.||+.+. .++.|.+ +| +.+.|.
T Consensus 109 ~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~ti~ 182 (666)
T 2o1u_A 109 VKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFSVI 182 (666)
T ss_dssp HHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCCEEE
T ss_pred HHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--eC-CeEEEE
Confidence 9987 46666321 1 245789999999999977 99999999999875 4778876 45 566663
Q ss_pred ccc---cCCCCcEEEEEeccch-hhhhhhhHHh-HhhhCCCchhhHH
Q 004299 383 IVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 424 (763)
Q Consensus 383 i~s---~~~~Gt~I~l~lk~~~-e~~~~~~L~~-I~kySpF~s~pI~ 424 (763)
... -..+||.|+|+++++. ++...+.++. |.+||.|.++||.
T Consensus 183 ~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 183 ADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp ECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred ecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 322 2458999999998765 6777788865 9999999999875
No 14
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.77 E-value=3.6e-19 Score=183.21 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=116.8
Q ss_pred HHHHHHHHHHccHHHhhcccccccc-------cccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhh-hcccCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIY-------FGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQ 326 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~-------~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~S~ 326 (763)
+..||+|||+||+||.++.++.++. ...+.|.|.. +. +...|+|.|||.||++++|.+++ .+|+|.
T Consensus 48 ~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~--~~----~~~~i~I~DnG~GMs~edl~~~~~~ia~S~ 121 (235)
T 2ior_A 48 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DK----DKRTLTISDNGVGMTRDEVIDHLGTIAKSG 121 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE--ET----TTTEEEEEECSSCCCHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE--cC----CceEEEEEECCCCCCHHHHHHHHHHHcccc
Confidence 4689999999999999865543321 1134555542 11 23579999999999999998876 688774
Q ss_pred CC------C----CCCCccccccccccccccccCCeEEEEEeeCCCC-ceeEEEEEecCCCccEEEcccccCCCCcEEEE
Q 004299 327 PD------A----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 395 (763)
Q Consensus 327 K~------~----~~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~-svg~ls~sf~eg~~~i~VPi~s~~~~Gt~I~l 395 (763)
+. . .+...+|+||+||+++++ ++++++|.||+.+.. ..++.|... +...+.+...+-...||.|++
T Consensus 122 ~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~-~~~~v~V~Sr~~~~~~~~~~~w~~~--~~~~~~i~~~~~~~~GT~V~v 198 (235)
T 2ior_A 122 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA--GEGEYTVADITKEDRGTEITL 198 (235)
T ss_dssp HHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG-TEEEEEEEEECTTSCGGGEEEEEEC--SSSEEEEEEECCCSCEEEEEE
T ss_pred ccchhhhhccccccccccCCCCChhHHHHHh-CcCeEEEEEecCCCCCceeEEEEec--CCCcEEEeeCCCCCCCEEEEE
Confidence 31 0 135689999999998865 999999999998753 567888763 444555533233458999999
Q ss_pred Eeccch-hhhhhhhHH-hHhhhCCCchhhHH
Q 004299 396 DTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 424 (763)
Q Consensus 396 ~lk~~~-e~~~~~~L~-~I~kySpF~s~pI~ 424 (763)
+++++. ++...+.+. +|.+|+.|..+||.
T Consensus 199 ~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 199 HLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp EECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred EEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 998654 455566664 49999999998885
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.64 E-value=9.4e-17 Score=136.06 Aligned_cols=55 Identities=33% Similarity=0.659 Sum_probs=49.2
Q ss_pred cCCCCCCCceeecc--cchhhccCCCCCCCCCCCCCccccCCCC--CCCCCCCcccccC
Q 004299 646 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 700 (763)
Q Consensus 646 ~~~~~~~~~WVQCd--~C~KWR~Lp~~~~~~~lp~~W~C~mnp~--~~sC~~pEe~~~~ 700 (763)
+.......+||||| .|+|||+||.++++..+|++|+|+||++ +++|++|||.++.
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 44456688999999 9999999999999888999999999996 6999999998874
No 16
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.55 E-value=3.9e-16 Score=140.73 Aligned_cols=58 Identities=19% Similarity=0.540 Sum_probs=49.6
Q ss_pred cCCCCCCCceeecccchhhccCCCCCC-CCCCCCCccccCCCC--CCCCCCCcccccCCce
Q 004299 646 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVV 703 (763)
Q Consensus 646 ~~~~~~~~~WVQCd~C~KWR~Lp~~~~-~~~lp~~W~C~mnp~--~~sC~~pEe~~~~~v~ 703 (763)
+..+.+..+|||||+|+|||+||.++. ...+|++|+|+||++ +++|++|||.++..+.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~ 79 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEIN 79 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHH
Confidence 344667889999999999999998765 356899999999996 7999999999887654
No 17
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.32 E-value=5e-12 Score=136.14 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=93.2
Q ss_pred eecChhhHhhhcc--ccccCHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHH
Q 004299 237 VRADPSYLQTLGQ--AHSGWIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 314 (763)
Q Consensus 237 v~~~p~fL~s~~t--sh~~w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 314 (763)
-.+++.-.+.++. .- ..+..||+|||+||+||+++ .+.|.+.. .+...|+|.|||.||+++
T Consensus 6 ~~L~~~~~~~I~agevi-~~~~~~v~ELi~NaidA~a~---------~I~I~i~~-------~~~~~i~V~DnG~Gi~~~ 68 (333)
T 1b63_A 6 QVLPPQLANQIAAGEVV-ERPASVVKELVENSLDAGAT---------RIDIDIER-------GGAKLIRIRDNGCGIKKD 68 (333)
T ss_dssp CCCCHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHTTCS---------EEEEEEEG-------GGTSEEEEEECSCCCCGG
T ss_pred eECCHHHHHHHhcCCch-hCHHHHHHHHHHHHHHCCCC---------eEEEEEEe-------CCceEEEEEEcCCCcCHH
Confidence 4455555554442 22 36899999999999999988 67777762 124689999999999999
Q ss_pred HHHHhhh-cccCCCCCC-----CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCc-cEEEcccccC
Q 004299 315 DVVRMTY-FGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLEIPIVSYY 387 (763)
Q Consensus 315 eL~~~l~-fG~S~K~~~-----~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~-~i~VPi~s~~ 387 (763)
++..++. |+++ |... ....+|++|+|+.+.++ ++ +++|.||+.+.. .++.+ +.+|.. .+.+ .+.-.
T Consensus 69 ~l~~~~~~~~ts-K~~~~~d~~~~~~~G~~G~gl~si~~-vs-~l~v~s~~~~~~-~~~~~--~~~g~~~~~~~-~~~~~ 141 (333)
T 1b63_A 69 ELALALARHATS-KIASLDDLEAIISLGFRGEALASISS-VS-RLTLTSRTAEQQ-EAWQA--YAEGRDMNVTV-KPAAH 141 (333)
T ss_dssp GHHHHHSTTCCS-SCCSHHHHHTCCSSCCSSCHHHHHHT-TS-EEEEEEECTTCS-SEEEE--EEETTTTEEEE-EEECC
T ss_pred HHHHhhhccccc-CccccchhhhccccCccccchhhhhc-CC-cEEEEEecCCCc-eEEEE--EEcCCcceEee-ecccC
Confidence 9999885 5544 4321 23579999999987655 66 899999998752 34433 334433 2222 11234
Q ss_pred CCCcEEEEE
Q 004299 388 RKGQFMELD 396 (763)
Q Consensus 388 ~~Gt~I~l~ 396 (763)
.+||.|++.
T Consensus 142 ~~GT~V~v~ 150 (333)
T 1b63_A 142 PVGTTLEVL 150 (333)
T ss_dssp CSEEEEEEE
T ss_pred CCCCEEEEe
Confidence 579999874
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.5e-11 Score=134.34 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=89.5
Q ss_pred ecChhhHhhhcc-ccccCHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHH
Q 004299 238 RADPSYLQTLGQ-AHSGWIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 316 (763)
Q Consensus 238 ~~~p~fL~s~~t-sh~~w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL 316 (763)
.+++...+.++. .-...+..+|.|||+||+||+|+ .+.|.+.. .+...|+|.|||.||+++++
T Consensus 8 ~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~---------~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l 71 (367)
T 3h4l_A 8 QINDIDVHRITSGQVITDLTTAVKELVDNSIDANAN---------QIEIIFKD-------YGLESIECSDNGDGIDPSNY 71 (367)
T ss_dssp -----CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCS---------EEEEEEET-------TTTSEEEEEECSCCCCGGGT
T ss_pred eCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCC---------EEEEEEEe-------CCEEEEEEEECCCCcChhHh
Confidence 345555555542 11135899999999999999998 66776641 23568999999999999999
Q ss_pred HHhhhcccCCCCCC-----CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcccccCCCCc
Q 004299 317 VRMTYFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQ 391 (763)
Q Consensus 317 ~~~l~fG~S~K~~~-----~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~s~~~~Gt 391 (763)
..++..++++|... ...+.|..|.|+.+.+. ++ +++|.||+.+ ..++.+.. ++.+.+..+.+.-...||
T Consensus 72 ~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~a-vS-~l~V~sr~~~--~~~~~~~~--~~~G~~~~~~~~~~~~GT 145 (367)
T 3h4l_A 72 EFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCG-IA-KLSVITTTSP--PKADKLEY--DMVGHITSKTTTSRNKGT 145 (367)
T ss_dssp TTTTCCEEC---------CCCCEEEETTHHHHHHHH-SS-EEEEEEESST--TCEEEEEE--CTTCCEEEEEEECCSSEE
T ss_pred ccceeccccCcCCchhhhhhhhccCccchHHHHhhc-cC-EEEEEEEECC--CCEEEEEE--cCCCcEEeeccccCCCCe
Confidence 98876555544321 23567888999987655 77 6999999987 45655543 222333332333446899
Q ss_pred EEEEE
Q 004299 392 FMELD 396 (763)
Q Consensus 392 ~I~l~ 396 (763)
.|++.
T Consensus 146 tV~v~ 150 (367)
T 3h4l_A 146 TVLVS 150 (367)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99874
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.17 E-value=2.9e-11 Score=131.92 Aligned_cols=136 Identities=17% Similarity=0.238 Sum_probs=83.6
Q ss_pred cChhhHhhhcccc-ccCHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHH
Q 004299 239 ADPSYLQTLGQAH-SGWIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 317 (763)
Q Consensus 239 ~~p~fL~s~~tsh-~~w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~ 317 (763)
+++...+.++... ...+..||.|||+||+||+++ .+.|.+.. .+...|+|.|||.||+++++.
T Consensus 18 L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~---------~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~ 81 (365)
T 1h7s_A 18 IDRKSVHQICSGQVVLSLSTAVKELVENSLDAGAT---------NIDLKLKD-------YGVDLIEVSDNGCGVEEENFE 81 (365)
T ss_dssp -----------CEEECCHHHHHHHHHHHHHHTTCS---------EEEEEEEG-------GGTSEEEEEECSCCCCGGGSG
T ss_pred CCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCC---------EEEEEEEe-------CCcEEEEEEECCCCcCHHHHH
Confidence 4444444443211 135889999999999999988 66777652 134689999999999999999
Q ss_pred Hhhh-cccCCCCCC--C---CCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcccccCCCCc
Q 004299 318 RMTY-FGHKQPDAD--D---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQ 391 (763)
Q Consensus 318 ~~l~-fG~S~K~~~--~---~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi~s~~~~Gt 391 (763)
.++. |.++ |... + ...+|.+|+|+.+.++ ++ +++|.||+.+. ..++.+. |. +.+.+....+.-..+||
T Consensus 82 ~~f~~~~ts-K~~~~~dl~~i~s~G~rG~gl~si~~-vs-~v~v~t~~~~~-~~~~~~~-~~-~~G~~~~~~~~~~~~GT 155 (365)
T 1h7s_A 82 GLTLKHHTS-KIQEFADLTQVETFGFRGEALSSLCA-LS-DVTISTCHASA-KVGTRLM-FD-HNGKIIQKTPYPRPRGT 155 (365)
T ss_dssp GGGC-----------CCTTCSEEESSSSSHHHHHHH-HS-EEEEEEECTTC-SSCEEEE-EC-TTSCEEEEEECCCCSEE
T ss_pred HHhhhcccc-ccccccchhcccccCCCCchhhhhhh-hc-cEEEEEccCCC-cceEEEE-Ec-CCCceEeecccCCCCCc
Confidence 9875 4444 4321 2 2457999999987665 77 99999999875 3455443 22 12234333233345799
Q ss_pred EEEEE
Q 004299 392 FMELD 396 (763)
Q Consensus 392 ~I~l~ 396 (763)
.|++.
T Consensus 156 ~V~v~ 160 (365)
T 1h7s_A 156 TVSVQ 160 (365)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=126.30 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=91.4
Q ss_pred eecChhhHhhhcc-ccccCHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHH
Q 004299 237 VRADPSYLQTLGQ-AHSGWIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 315 (763)
Q Consensus 237 v~~~p~fL~s~~t-sh~~w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee 315 (763)
-.+++...+.++. .....+..+|.|||+||+||+++ .+.|.++. .+...|+|.|||.||++++
T Consensus 10 ~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~---------~I~I~i~~-------~~~~~I~V~DnG~GI~~~~ 73 (348)
T 3na3_A 10 RRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKST---------SIQVIVKE-------GGLKLIQIQDNGTGIRKED 73 (348)
T ss_dssp CCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCS---------EEEEEEEG-------GGTSEEEEEECSCCCCGGG
T ss_pred ccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCC---------EEEEEEEe-------CCEEEEEEEECCcCcChHH
Confidence 3466666666652 11135899999999999999988 67777751 1346799999999999999
Q ss_pred HHHhhhcccCCCCCC-----CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcc-cccCCC
Q 004299 316 VVRMTYFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRK 389 (763)
Q Consensus 316 L~~~l~fG~S~K~~~-----~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi-~s~~~~ 389 (763)
+..++..++++|... ...+.|.+|.|+.+.+. ++ +++|.||+.+.. .++.+. |..|. +..+. +.-..+
T Consensus 74 l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~a-vs-~l~v~sr~~~~~-~~~~~~-~~~G~--~~~~~~~~~~~~ 147 (348)
T 3na3_A 74 LDIVCERFTTSKLQSFEDLASISTYGFRGEALASISH-VA-HVTITTKTADGK-CAYRAS-YSDGK--LKAPPKPCAGNQ 147 (348)
T ss_dssp GGTTTSTTCCSSCCCC---------CCTTCHHHHHHH-SS-EEEEEEECTTCS-SEEEEE-EETTE--ESSCCEEECCCS
T ss_pred hhhhhccccccccCcchhhhccccCCcCChHHHHhhc-cc-EEEEEEEECCCC-ceEEEE-EeCCE--EeeeeeEecCCC
Confidence 998887666655432 23578999999976554 77 899999998853 344332 22221 11011 122457
Q ss_pred CcEEEEE
Q 004299 390 GQFMELD 396 (763)
Q Consensus 390 Gt~I~l~ 396 (763)
||.|++.
T Consensus 148 GTtV~v~ 154 (348)
T 3na3_A 148 GTQITVE 154 (348)
T ss_dssp EEEEEEE
T ss_pred CcEEEEC
Confidence 9999874
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.96 E-value=8.3e-09 Score=113.60 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=74.1
Q ss_pred CcceeecChh-hHhhhccccccCHHHHHHHHHHccHHH---h-hcccccccccccEEEEEEecccccCCCCCCEEEEEEC
Q 004299 233 EKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDD 307 (763)
Q Consensus 233 ~~~~v~~~p~-fL~s~~tsh~~w~f~AIaELIDNAiDA---~-A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DN 307 (763)
+..+++..|. |+-+.+... =+...+.||||||+|| + ++ .|.|.|.. ...|+|.||
T Consensus 14 gle~vrkRPgmYiGst~~~~--gl~~lv~ElvdNsiDea~~g~a~---------~I~V~i~~---------~g~I~V~Dn 73 (391)
T 1ei1_A 14 GLDAVRKRPGMYIGDTDDGT--GLHHMVFEVVDNAIDEALAGHCK---------EIIVTIHA---------DNSVSVQDD 73 (391)
T ss_dssp TTHHHHHCTHHHHCCSSSSH--HHHHHHHHHHHHHHHHHHTTCCC---------EEEEEECT---------TSCEEEEEC
T ss_pred hhHHHHcCCCeEECCCCCCc--CHHHHHHHHHHhHHHHHhcCCCC---------EEEEEEeC---------CCEEEEEEC
Confidence 3445555553 554443321 2678999999999999 3 55 56666641 238999999
Q ss_pred CCCCCHHH--------HHHhhh-cccCCCCCC--CCCccccccccccccccccCCeEEEEEeeCC
Q 004299 308 GHGMTHQD--------VVRMTY-FGHKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 361 (763)
Q Consensus 308 G~GMt~ee--------L~~~l~-fG~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~ 361 (763)
|.||+.++ +.-+|. +..++|..+ -..+.|..|+|+++... ++..++|.|++.+
T Consensus 74 G~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vna-lS~~l~v~~~r~g 137 (391)
T 1ei1_A 74 GRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA-LSQKLELVIQREG 137 (391)
T ss_dssp SSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHH-TEEEEEEEEEETT
T ss_pred CCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHH-hcCeEEEEEEeCC
Confidence 99999988 334555 555555432 23578999999987655 8889999998765
No 22
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.89 E-value=2e-08 Score=110.53 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=72.0
Q ss_pred cceeecChh-hHhhhccccccCHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCC
Q 004299 234 KNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMT 312 (763)
Q Consensus 234 ~~~v~~~p~-fL~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt 312 (763)
..+++..|. |+-+... . -+...|.|||+||+|+..... ...|.|.+.. ...|+|.|||.||+
T Consensus 14 le~vr~rpgmyiGs~~~-~--g~~~~v~Elv~N~iD~a~~~~-----~~~I~V~i~~---------~~~i~V~DnG~GIp 76 (390)
T 1kij_A 14 LEGVRHRPAMYIGGTGV-E--GYHHLFKEILDNAVDEALAGY-----ATEILVRLNE---------DGSLTVEDNGRGIP 76 (390)
T ss_dssp THHHHHCTHHHHSCSSH-H--HHHHHHHHHHHHHHHHHHTTS-----CCEEEEEECT---------TSCEEEEECSSCCC
T ss_pred hHHHhcCCCcEEccCCc-c--hHHHHHHHHHHHHHHHhhhCC-----CCEEEEEEEc---------CCEEEEEEcCCCCC
Confidence 445555554 4433322 1 146789999999999984310 1155555541 24899999999999
Q ss_pred HHHHHH--------hhh-cccCCCCCC--CCCccccccccccccccccCCeEEEEEeeCC
Q 004299 313 HQDVVR--------MTY-FGHKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 361 (763)
Q Consensus 313 ~eeL~~--------~l~-fG~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~ 361 (763)
.+++.+ +|. |...+|... .....|..|+|++.+.. ++..++|.|++.+
T Consensus 77 ~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~a-ls~~~~v~t~~~g 135 (390)
T 1kij_A 77 VDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNA-LSEWTVVEVFREG 135 (390)
T ss_dssp CSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHH-TEEEEEEEEEETT
T ss_pred HHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecc-cccceEEEEecCC
Confidence 998754 453 333333211 12367899999987766 8889999999765
No 23
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.81 E-value=9e-09 Score=103.69 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=67.5
Q ss_pred HHHHHHHHHccHHH---h-hcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHH--------HHhh-hc
Q 004299 256 FGAIAELVDNSRDA---K-ATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMT-YF 322 (763)
Q Consensus 256 f~AIaELIDNAiDA---~-A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l-~f 322 (763)
..+|.|||+||+|| + ++ .|.|.|.. ...|+|.|||.||+.+++ .-++ ..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~---------~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ 80 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAK---------RVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 80 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCS---------EEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC
T ss_pred hhhhHHHHHHHHHHHhcCCCc---------EEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeee
Confidence 57899999999999 3 55 56666541 238999999999999883 3323 34
Q ss_pred ccCCCCCC--CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEcc-ccc--CCCCcEEEEEe
Q 004299 323 GHKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 397 (763)
Q Consensus 323 G~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VPi-~s~--~~~Gt~I~l~l 397 (763)
..++|..+ -..+.|..|.|+++... ++..++|.|++.+. .+.+.|..|.-.-.++. ..- ...||.|++..
T Consensus 81 hatsK~~~~~~~~s~GfrGeglssina-lS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 155 (201)
T 3fv5_A 81 HAGGKFSNKNYQFSGGLHGVGISVVNA-LSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 155 (201)
T ss_dssp ---------------------CHHHHH-TEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred ccccCcCCCcccccCcccceecchhhc-ccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEE
Confidence 44445432 13478999999987665 88899999998763 24455644432112221 122 45799998754
No 24
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.76 E-value=1.1e-07 Score=103.87 Aligned_cols=85 Identities=8% Similarity=0.038 Sum_probs=56.3
Q ss_pred HHHHHHHHHHccHHH----hhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCC
Q 004299 255 IFGAIAELVDNSRDA----KATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD 330 (763)
Q Consensus 255 ~f~AIaELIDNAiDA----~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~ 330 (763)
|..++.||||||+|| .++ .|.|.|+. ...|+|.|||.||+. |+.- ....++|...
T Consensus 31 l~~~v~ElvdNsiDe~~~g~a~---------~I~V~i~~---------~g~I~V~DnGrGIp~-e~v~--~lhagsKf~~ 89 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARRGECR---------DVVLEVGG---------DGSIALFCTSRTVTA-ENLV--RVATGAGFLG 89 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCS---------EEEEEECT---------TSCEEEEEEESSCCH-HHHH--HHHTTTTGGG
T ss_pred HHHHHHHHHhhhHhHHhhCCCC---------EEEEEEeC---------CCEEEEEECCCCcCH-hHee--eeecCCCcCC
Confidence 678999999999999 455 66666641 238999999999999 4432 3333344321
Q ss_pred CC--CccccccccccccccccCCeEEEEEeeCCC
Q 004299 331 DP--NRIGRFGVGFKTGAMRLGKDALVLTQTADS 362 (763)
Q Consensus 331 ~~--~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~ 362 (763)
.. +..+.-| |+++. -.++..++|.|++.+.
T Consensus 90 ~~~~~~y~vsG-Gls~v-nalSs~l~v~t~r~g~ 121 (369)
T 3cwv_A 90 RPPGDGWGWDS-MLVVS-LALSSRYQVDIWADGR 121 (369)
T ss_dssp SSCCCSTTTTS-SHHHH-HHTEEEEEEEEEETTE
T ss_pred CcccccccccC-HHHHH-HHhhceEEEEEEECCC
Confidence 11 2333335 75543 3488899999998653
No 25
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.69 E-value=7.7e-08 Score=106.21 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHH--------HHHhhh-cccC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHK 325 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~S 325 (763)
+...+.||||||+||.....+ ...+.|.|.. +...|+|.|||.||+.++ +.-+|+ +..+
T Consensus 53 L~~lv~EivdNsiDe~~~~g~----~~~I~V~i~~--------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 53 LYKIFDEILVNAADNKQRDPK----MSCIRVTIDP--------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT----CCEEEEEEET--------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHHhhHHhHHhhcCC----CceEEEEEEC--------CCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 568899999999999821111 1166676651 126899999999999887 444555 4444
Q ss_pred CCCCC--CCCccccccccccccccccCCeEEEEEeeC
Q 004299 326 QPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTA 360 (763)
Q Consensus 326 ~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~ 360 (763)
+|... -.-+.|..|+|+++... |+..++|.++..
T Consensus 121 sKf~~~~ykvSgGlhGvGlsvVnA-lS~~l~v~v~~~ 156 (400)
T 1zxm_A 121 SNYDDDEKKVTGGRNGYGAKLCNI-FSTKFTVETASR 156 (400)
T ss_dssp SCCCGGGCCCCSCCSSCHHHHHHH-TEEEEEEEEEET
T ss_pred CCCCCCcccccCCccccceeeeEE-eccceEEEEecC
Confidence 44432 23488999999986655 888999999874
No 26
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.55 E-value=2.1e-07 Score=102.50 Aligned_cols=282 Identities=15% Similarity=0.058 Sum_probs=154.8
Q ss_pred HHHHHHHHccHHHh----hcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHH--------HHHhhh-cc
Q 004299 257 GAIAELVDNSRDAK----ATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FG 323 (763)
Q Consensus 257 ~AIaELIDNAiDA~----A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG 323 (763)
.++.||||||+||. ++ .|.|.|.. ...|+|.|||.||+.++ +..+|. +.
T Consensus 34 ~lv~ElvdNsiD~a~~g~a~---------~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lh 95 (390)
T 1s16_A 34 HLGQEVIDNSVDEALAGHAK---------RVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 (390)
T ss_dssp HHHHHHHHHHHHHHHTTCCS---------EEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcCCCC---------EEEEEEec---------CCEEEEEECCCCcCcccccccCcchhhheeeeec
Confidence 67999999999993 55 56666641 23899999999999988 555664 44
Q ss_pred cCCCCCC--CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCccEEEc-ccccC--CCCcEEEEEec
Q 004299 324 HKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYY--RKGQFMELDTV 398 (763)
Q Consensus 324 ~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~~i~VP-i~s~~--~~Gt~I~l~lk 398 (763)
.++|..+ -..+.|..|+|+++... |+..++|.|++.+. .+.+.|..|.-.-.+. +.... ..||.|++...
T Consensus 96 agsKf~~~~~~~sgGl~GvGls~vna-lS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd 170 (390)
T 1s16_A 96 AGGKFSNKNYQFSGGLHGVGISVVNA-LSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 (390)
T ss_dssp EESCSSSSSCSSCSCCSSCHHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred ccCCcCCCcccccCCccccchHHHHH-hhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEEC
Confidence 4555322 23478999999986655 88899999997652 3445564442111121 22233 57999987642
Q ss_pred cchhhhhhhhHHhHhhhCCCchhhHHHhhhcccCCCCCcEEEEEcccccCCcceeeccCCCCCCCCCccCcceeeccccc
Q 004299 399 VQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIR 478 (763)
Q Consensus 399 ~~~e~~~~~~L~~I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~NL~r~~~~~ELdFd~d~~~~~~~~~~DI~i~~~~~~ 478 (763)
.+ .+ +-..|...-|.+.+..+.--..|..|.+.+-+. ..+..|
T Consensus 171 ~~-~F----------~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f----------------------- 213 (390)
T 1s16_A 171 ET-FF----------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRW----------------------- 213 (390)
T ss_dssp GG-GS----------SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEE-----------------------
T ss_pred cc-cc----------CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC---ceeEEE-----------------------
Confidence 21 11 001122112222222222224677777664431 000011
Q ss_pred CCCCcccccCcccchHHHHHHHhhcCCC-e---EEEEcCeEecccccccccCcceeecccccceeEEEEEcccccccccc
Q 004299 479 SRPGQISQKVPLDYSLRSYLEVIFLVPR-M---KIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQM 554 (763)
Q Consensus 479 ~~~~q~~~~~p~~ySLRaYLSiLYL~Pr-m---~I~LnGkkV~~~~i~~~L~~t~v~~~~i~~~~V~It~Gf~~~e~~~~ 554 (763)
.+.-.|++|+..|+=... + -|++.| +..+..|++.+....+ ..
T Consensus 214 ----------~~~gGl~~~v~~l~~~~~~~~~~~i~~~~--------------------~~~~~~ve~a~~~~~~---~~ 260 (390)
T 1s16_A 214 ----------CYQDGLNDYLAEAVNGLPTLPEKPFIGNF--------------------AGDTEAVDWALLWLPE---GG 260 (390)
T ss_dssp ----------CCSSCHHHHHHHHHTTSCCEEEEEEEEEE--------------------ECSSEEEEEEEEECTT---CC
T ss_pred ----------EcCCcHHHHHHHHhCCCcccCCCcEEEEE--------------------eeCCEEEEEEEEeccC---CC
Confidence 111258899987653211 1 111111 1112345555554211 12
Q ss_pred cceEEEEEeCeEeeee-eec------------------c-----cccccCCCCceEEEEEecCcccccCCCccccccCcc
Q 004299 555 NCGIFLYWHGRLIEAY-KRV------------------G-----GMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQ 610 (763)
Q Consensus 555 ~~Gi~VY~nnRLI~~~-~kV------------------g-----~q~~~~~~grGVIGVve~~~l~~p~~~~~~pthnKQ 610 (763)
...++.|.|||-+.-+ -.+ + ..+.+..--.|+..||.+. +++| .|. ..+|.
T Consensus 261 ~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avisvk--i~~P--~Fe-gQTK~ 335 (390)
T 1s16_A 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK--MQDP--QFA-GQTKE 335 (390)
T ss_dssp CCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEEEE--ESSC--CBS-STTCC
T ss_pred CceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEEee--cCCC--Ccc-ccccc
Confidence 3458899999988632 100 0 0011111123788888773 2322 233 56777
Q ss_pred CCcCchHHHHHHHHHHHHHHHHHhhc
Q 004299 611 GFLDCEPYARLEEWLGKVADEYWDNK 636 (763)
Q Consensus 611 dFe~t~~y~~L~~~L~e~l~eYW~~~ 636 (763)
---.+.........+.+.+..|..+|
T Consensus 336 kL~~~e~~~~v~~~v~~~l~~~l~~n 361 (390)
T 1s16_A 336 RLSSRQCAAFVSGVVKDAFILWLNQN 361 (390)
T ss_dssp CBCCTHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHC
Confidence 67677777778888999998888653
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.53 E-value=2e-07 Score=95.28 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=81.1
Q ss_pred cceeecChh-hHhhhccccccCHHHHHHHHHHccHHH----hhcccccccccccEEEEEEecccccCCCCCCEEEEEECC
Q 004299 234 KNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDG 308 (763)
Q Consensus 234 ~~~v~~~p~-fL~s~~tsh~~w~f~AIaELIDNAiDA----~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG 308 (763)
..++|-.|. |+-+.+... -+..++.||||||+|+ .++ .|.|.|.. ...|+|.|||
T Consensus 16 le~vr~rPgmYiG~~~~~~--gl~~lv~ElvdNsiDea~~g~~~---------~I~V~i~~---------~g~i~V~DnG 75 (220)
T 4duh_A 16 LDAVRKRPGMYIGDTDDGT--GLHHMVFEVVDNAIDEALAGHCK---------EIIVTIHA---------DNSVSVQDDG 75 (220)
T ss_dssp HHHHHHSTHHHHCCSSSSH--HHHHHHHHHHHHHHHHHHHSCCC---------EEEEEECT---------TSCEEEEECS
T ss_pred hHHHHhCCceEECCCCCcc--cHHHHHHHHHHHHHHHHhcCCCC---------EEEEEEeC---------CCcEEEEECC
Confidence 445555553 344333211 2678999999999999 455 56666541 2479999999
Q ss_pred CCCCHHHH--------HHhhh-cccCCCCCC--CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCc
Q 004299 309 HGMTHQDV--------VRMTY-FGHKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 377 (763)
Q Consensus 309 ~GMt~eeL--------~~~l~-fG~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~ 377 (763)
.||+.+.. .-+|+ +-.+.|..+ -..+.|..|+|+++.-. |+..++|.+++.+. .+.+.|..|.-
T Consensus 76 rGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNA-lS~~l~v~v~r~g~----~~~~~f~~G~~ 150 (220)
T 4duh_A 76 RGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNA-LSQKLELVIQREGK----IHRQIYEHGVP 150 (220)
T ss_dssp SCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEE
T ss_pred cCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhcc-cccceEEEEEECCE----EEEEEecCCcC
Confidence 99999863 22343 333444432 24688999999986555 88899999998763 24455643321
Q ss_pred --cEEEcccccCCCCcEEEEEe
Q 004299 378 --NLEIPIVSYYRKGQFMELDT 397 (763)
Q Consensus 378 --~i~VPi~s~~~~Gt~I~l~l 397 (763)
...+ +..-...||.|++..
T Consensus 151 ~~~l~~-~g~~~~~GT~V~F~P 171 (220)
T 4duh_A 151 QAPLAV-TGETEKTGTMVRFWP 171 (220)
T ss_dssp SSSCEE-EEECSCCEEEEEEEE
T ss_pred cCCcee-ccccCCCCcEEEEEE
Confidence 1111 112246799998764
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.48 E-value=4.9e-07 Score=92.74 Aligned_cols=144 Identities=21% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCcceeecChh-hHhhhccccccCHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCC
Q 004299 232 LEKNFVRADPS-YLQTLGQAHSGWIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHG 310 (763)
Q Consensus 232 ~~~~~v~~~p~-fL~s~~tsh~~w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~G 310 (763)
.+..++|..|. |+-+.+.. =+...+.|||+||+|+...-. ...+.|.|.. ...|+|.|||.|
T Consensus 20 ~~le~vr~RPgmYiGs~~~~---gl~~~v~Eiv~NaiD~~~~g~-----~~~I~V~i~~---------~g~i~V~DnG~G 82 (226)
T 4emv_A 20 EGLDAVRKRPGMYIGSTDGA---GLHHLVWEIVDNAVDEALSGF-----GDRIDVTINK---------DGSLTVQDHGRG 82 (226)
T ss_dssp BCTHHHHHCHHHHHSCSSHH---HHHHHHHHHHHHHHHHHHTTC-----CSEEEEEECT---------TSCEEEEECSSC
T ss_pred chhHHHhhCCceEEcCCCcc---cHHHHHHHHHHHHHHHHhcCC-----CcEEEEEEeC---------CCeEEEEEcCCC
Confidence 34566666664 44443321 156789999999999943210 0155665541 247999999999
Q ss_pred CCHHH-------HHHhhh-cccCCCCCC--CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCC-Cc--
Q 004299 311 MTHQD-------VVRMTY-FGHKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD-- 377 (763)
Q Consensus 311 Mt~ee-------L~~~l~-fG~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg-~~-- 377 (763)
|+.++ +.-+|+ +-.+.|..+ -..+-|..|+|+++.-. |+..++|.+++.+. .+.+.|..| ..
T Consensus 83 Ip~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNA-LS~~l~v~v~r~g~----~~~q~f~~Gg~~~~ 157 (226)
T 4emv_A 83 MPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA-LSSWLEVEITRDGA----VYKQRFENGGKPVT 157 (226)
T ss_dssp CCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHH-TEEEEEEEEEETTE----EEEEEEETTTEESS
T ss_pred ccccccccCceehheeEEeecccCccCccceEeccccccccchhhhh-cccceEEEEEeCCc----EEEEEECCCCEEcC
Confidence 99998 444564 444444432 25688999999986555 88999999998763 244566444 21
Q ss_pred cEE-EcccccCCCCcEEEEEe
Q 004299 378 NLE-IPIVSYYRKGQFMELDT 397 (763)
Q Consensus 378 ~i~-VPi~s~~~~Gt~I~l~l 397 (763)
... +....-...||.|++..
T Consensus 158 ~l~~ig~~~~~~~GT~V~F~P 178 (226)
T 4emv_A 158 TLKKIGTALKSKTGTKVTFMP 178 (226)
T ss_dssp CSEEEEECCTTCCEEEEEEEE
T ss_pred CceEecccCCCCCCeEEEEEE
Confidence 111 11111145799998764
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.38 E-value=9.6e-07 Score=99.38 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhh-cccCCCCCCCC
Q 004299 254 WIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDP 332 (763)
Q Consensus 254 w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~K~~~~~ 332 (763)
.+..+|.|||+||+||.+..... ..|.|.+.. +. ...+...|+|.|||.||+.+++.+++. |.++++.. ..
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~----p~I~I~i~~--~~-~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~-~~ 103 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGIL----PNIKITIDL--ID-DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV-NR 103 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCC----CEEEEEEEE--EE-TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC-CS
T ss_pred HHHHHHHHHHHHHHHHhhcCCCc----eEEEEEEEE--CC-CcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc-cc
Confidence 46789999999999998872100 035565552 10 012346799999999999999999886 54555432 33
Q ss_pred Ccccccccccccccc---ccCCe-EEEEEeeCCCCceeEEEEEec-C-CCccE-EE-cccc-cCCCCcEEEEEecc
Q 004299 333 NRIGRFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-Q-GKDNL-EI-PIVS-YYRKGQFMELDTVV 399 (763)
Q Consensus 333 ~~IGqFGiGfKsAsm---rLG~~-v~V~SK~~~~~svg~ls~sf~-e-g~~~i-~V-Pi~s-~~~~Gt~I~l~lk~ 399 (763)
...|..|+|+..+.. ..|.. +.|.|+..+......+...+. . ..... .. +... -..+||.|.+.+..
T Consensus 104 ~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 179 (471)
T 1mu5_A 104 QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 179 (471)
T ss_dssp CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEEC
T ss_pred cCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcC
Confidence 567889999986532 24445 999998776421222222221 1 11111 11 1111 23479999887643
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.24 E-value=1.6e-06 Score=98.95 Aligned_cols=138 Identities=17% Similarity=0.281 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhh-cccCCCCCCCC
Q 004299 254 WIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDP 332 (763)
Q Consensus 254 w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~K~~~~~ 332 (763)
.+..+|.|||+||+||.+..... ..+.|.+... . ...+...|+|.|||.||+++++.++|. |.++++.. ..
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~----p~I~I~i~~~--~-~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~-~~ 102 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGIL----PNIKITIDLI--D-DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV-NR 102 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCC----CCCEEEEEEE--E-TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC-CS
T ss_pred HHHHHHHHHHHHHHHHHhccCCC----eEEEEEEEEC--C-CcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc-cc
Confidence 46789999999999998772100 0456666531 0 012345899999999999999999886 54555431 33
Q ss_pred Ccccccccccccccc---ccCCe-EEEEEeeCCCCceeEEEEEec-CCCccEEE---ccccc-CCCCcEEEEEecc
Q 004299 333 NRIGRFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSLN-QGKDNLEI---PIVSY-YRKGQFMELDTVV 399 (763)
Q Consensus 333 ~~IGqFGiGfKsAsm---rLG~~-v~V~SK~~~~~svg~ls~sf~-eg~~~i~V---Pi~s~-~~~Gt~I~l~lk~ 399 (763)
...|..|+|+..+.. ..|.. +.|.|+..+......+...+. ........ +...+ ..+||.|.+.++.
T Consensus 103 ~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 178 (530)
T 2zbk_B 103 QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 178 (530)
T ss_dssp CCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEEC
T ss_pred cCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEEecc
Confidence 577999999976532 24444 999998766421222222221 11111111 11122 3479999887643
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.17 E-value=2.6e-06 Score=94.25 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=66.4
Q ss_pred HHHHHHHHHccHHH----hhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHH--------HHhhh-c
Q 004299 256 FGAIAELVDNSRDA----KATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-F 322 (763)
Q Consensus 256 f~AIaELIDNAiDA----~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-f 322 (763)
...+.||||||+|+ .++ .|.|.|.. ...|+|.|||.||+.+.. .-+|+ +
T Consensus 52 ~hlv~EivdNsiDea~ag~~~---------~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~l 113 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAK---------QIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRL 113 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---------EEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC
T ss_pred chhhHHHHHHHHHHhhcCCCc---------eEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEec
Confidence 35799999999999 444 56666541 247999999999999863 23343 3
Q ss_pred ccCCCCCC--CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCc--cEE-EcccccCCCCcEEEEEe
Q 004299 323 GHKQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDT 397 (763)
Q Consensus 323 G~S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~--~i~-VPi~s~~~~Gt~I~l~l 397 (763)
-.+.|..+ -..+-|..|+|.+..-. |+..++|.+++.+. .+.+.|..|.. ... +........||.|++..
T Consensus 114 haggKfd~~~ykvSgGlhGvG~svVNA-LS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~P 188 (408)
T 3lnu_A 114 HAGGKFNNRNYTFSGGLHGVGVSVVNA-LSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWA 188 (408)
T ss_dssp --------------------CHHHHHH-TEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEE
T ss_pred ccCCCcCCCceeecCCccccccceehh-ccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEE
Confidence 33333321 24678999999986555 89999999998773 24456644321 111 11111135799988764
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.14 E-value=2.7e-06 Score=98.61 Aligned_cols=136 Identities=17% Similarity=0.265 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhh-cccCCCCCCCC
Q 004299 254 WIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDP 332 (763)
Q Consensus 254 w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~S~K~~~~~ 332 (763)
.+..+|.|||+||+||.++.... ..+.|.+.. + +.+...|+|.|||.||+.+++.++|. |..+++.....
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~----~~I~V~i~~--~---~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~ 107 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGIL----PDILVQVER--T---GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALK 107 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCS----CEEEECCEE--E---TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC----cEEEEEEEE--C---CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccccc
Confidence 36689999999999999862110 134554442 1 11235799999999999999999885 43444432223
Q ss_pred Ccccccccccccccc---cc-CCeEEEEEeeCCCCceeEEEEEe--cCCCccE--EEcccccCCCCcEEEEEec
Q 004299 333 NRIGRFGVGFKTGAM---RL-GKDALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 398 (763)
Q Consensus 333 ~~IGqFGiGfKsAsm---rL-G~~v~V~SK~~~~~svg~ls~sf--~eg~~~i--~VPi~s~~~~Gt~I~l~lk 398 (763)
...|..|+|+..+.. .+ |..+.|.|+..+......+...+ ..+.... .-+.+.-..+||.|++.++
T Consensus 108 ~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 108 QSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp -CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred ccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 456999999986432 22 33378999877632222222222 1222222 1111122347999988754
No 33
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.81 E-value=6.5e-05 Score=83.43 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=77.1
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHH--------hhh-cccC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHK 325 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~S 325 (763)
+...+-|+||||+|+.....+ ...|.|.|.. +...|+|.|||.||+.+...+ +|+ +...
T Consensus 65 L~~lv~EivdNaiDe~~~~g~----~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaG 132 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPS----MKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 132 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT----CCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred HHHHHHHHHhCHHHHHHhcCC----CCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecc
Confidence 446899999999999733111 1166777662 125899999999999775322 343 3333
Q ss_pred CCCCC--CCCccccccccccccccccCCeEEEEEee--CCCCceeEEEEEecCCCccEEEc-cccc--CCCCcEEEEEec
Q 004299 326 QPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQT--ADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTV 398 (763)
Q Consensus 326 ~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK~--~~~~svg~ls~sf~eg~~~i~VP-i~s~--~~~Gt~I~l~lk 398 (763)
.|..+ -.-+-|..|+|.+..-. |+..++|.+++ .+. .+.+.|..|.....-| +... ...||.|.....
T Consensus 133 gKfd~~~ykvSGGLhGVG~SvVNA-LS~~l~V~v~r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD 207 (418)
T 1pvg_A 133 SNYDDDEKKVTGGRNGYGAKLCNI-FSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPD 207 (418)
T ss_dssp SCCCTTSCCCCSCCSSCHHHHHHH-TEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEEC
T ss_pred cccCCCceeccCCccceeeeeeee-ccceEEEEEEECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEEC
Confidence 34322 24577999999875444 88999999986 332 3445664432111111 1111 347999887653
No 34
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.75 E-value=6.9e-05 Score=75.33 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=79.5
Q ss_pred HHHHHHHHHHccHHHh----hcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCC
Q 004299 255 IFGAIAELVDNSRDAK----ATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD 330 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~----A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~ 330 (763)
+...+.||||||+|+. ++ .+.|.|.. ...|+|.|||.||+.+.- ..++..
T Consensus 32 l~~~v~Elv~NsiD~~~ag~~~---------~I~V~i~~---------~g~i~V~DnG~Gip~~~h-------~~~~~~- 85 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALAGYAN---------QIEVVIEK---------DNWIKVTDNGRGIPVDIQ-------EKMGRP- 85 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC---------EEEEEEEG---------GGEEEEEECSSCCCCSBC-------TTTSSB-
T ss_pred hHHHHHHHHHHHHhHHhcCCCc---------EEEEEEeC---------CCeEEEEECCCCcccccc-------CcCCCc-
Confidence 6688999999999973 44 66776652 238999999999998611 011100
Q ss_pred CCCccccccccccccccccCCeEEEEEeeCCCCceeEEEEEecCCCc--cE-EEcccccCCCCcEEEEEeccchhhhhhh
Q 004299 331 DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKY 407 (763)
Q Consensus 331 ~~~~IGqFGiGfKsAsmrLG~~v~V~SK~~~~~svg~ls~sf~eg~~--~i-~VPi~s~~~~Gt~I~l~lk~~~e~~~~~ 407 (763)
....+ |+ -++.-.|+..++|.|++.+. .+.+.|..|.- .. .++ .-...||.|.+....+ .+.
T Consensus 86 ~~e~i--~t---~SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~-iF~--- 150 (198)
T 3ttz_A 86 AVEVI--LT---SSVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGE-IFT--- 150 (198)
T ss_dssp HHHHH--HH---TCHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTT-TCC---
T ss_pred ccccc--ce---eEehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHH-Hhc---
Confidence 00111 22 33444578899999998774 24455644321 11 122 2246799998764221 110
Q ss_pred hHHhHhhhCCCchhhHHHhhhcccCCCCCcEEEEEccc
Q 004299 408 NLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 445 (763)
Q Consensus 408 ~L~~I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~NL~ 445 (763)
+-.-|...-|...+..+.--..|.+|.+.+-+
T Consensus 151 ------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 182 (198)
T 3ttz_A 151 ------ETTVYNYETLQQRIRELAFLNKGIQITLRDER 182 (198)
T ss_dssp ------SCCCCCHHHHHHHHHHHHHHSTTCEEEEEECS
T ss_pred ------cCCccCHHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 11112222223222222222578888888765
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.50 E-value=0.00022 Score=65.45 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=59.7
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+... .+.|.+.. ..+.-.|.|.|||.||+.+++.+.+..+++.+..
T Consensus 45 l~~il~nLl~NAi~~~~~---------~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----- 104 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLE---------FVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----- 104 (152)
T ss_dssp HHHHHHHHHHHHHHHCSS---------EEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----
T ss_pred HHHHHHHHHHHHHHhCcC---------eEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----
Confidence 558899999999999765 55666552 1235689999999999999998888655443321
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
-+..|+|+..+ .-.+|.++.+.+..
T Consensus 105 ~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 105 RPGQGVGLAVAREITEQYEGKIVAGESM 132 (152)
T ss_dssp CTTCCSCHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEEeCC
Confidence 24578888643 23467777776654
No 36
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.45 E-value=0.00019 Score=78.27 Aligned_cols=99 Identities=14% Similarity=0.227 Sum_probs=65.3
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCC----
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 330 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~---- 330 (763)
+..+|.+||+||+.|.............|.|.+.. ..+.-.|.|.|||.||+++++.+.|...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 56889999999999976521000000146666652 12356799999999999999999997555433210
Q ss_pred -CCCcccccccccccc---ccccCCeEEEEEee
Q 004299 331 -DPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 331 -~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
.....+.+|+|+..+ .-..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 133557789998643 23467778877754
No 37
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.36 E-value=0.00027 Score=76.61 Aligned_cols=99 Identities=15% Similarity=0.264 Sum_probs=61.2
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCC----
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 330 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~---- 330 (763)
+..+|.+||+||+.|...........+.|.|.+.. ..+.-.|.|.|||.||+++++.+.|...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 56889999999999977621000000136676653 12356799999999999999999997655533210
Q ss_pred CCCcccccccccccc---ccccCCeEEEEEee
Q 004299 331 DPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 331 ~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
.....+.+|+|+..+ .-.+|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 123456789998643 33467888887754
No 38
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.36 E-value=0.00029 Score=76.44 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCC----
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 330 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~---- 330 (763)
+..+|.+||+||+.|.............|.|.+.. ..+.-.|.|.|||.||+++++.+.|...++.+...
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 56889999999999976521000000136676653 22356899999999999999999997665543210
Q ss_pred -CCCcccccccccccc---ccccCCeEEEEEee
Q 004299 331 -DPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 331 -~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
.....+.+|+|+..+ .-..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 223456789998643 23467788887754
No 39
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.31 E-value=0.00028 Score=64.44 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=58.8
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+.... +.+.|.+.. ..+.-.|.|.|||.||+.+++.+.+...++.+.
T Consensus 48 l~~il~nll~NAi~~~~~~-------~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------ 108 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGEN-------GKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------ 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTT-------CEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC-------
T ss_pred HHHHHHHHHHHHHHhcCCC-------CEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------
Confidence 5588999999999997542 256666552 123567999999999999999888865444321
Q ss_pred ccccccccccc--cc--ccCCeEEEEEe
Q 004299 335 IGRFGVGFKTG--AM--RLGKDALVLTQ 358 (763)
Q Consensus 335 IGqFGiGfKsA--sm--rLG~~v~V~SK 358 (763)
+..|+|+..+ .+ ..|..+.+.+.
T Consensus 109 -~g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 109 -QGTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp --CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred -CCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 3468898754 22 47778777765
No 40
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.25 E-value=0.0003 Score=77.16 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=61.2
Q ss_pred HHHHHHHHHHccHHHhhccccccc-ccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCC----
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSI-YFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 329 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l-~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~---- 329 (763)
+..+|.+||+||+.|......... ....|.|.+.. ..+.-.|.|.|||.||+++++.+.|...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 568899999999999765210000 00146666652 1235689999999999999999999755543321
Q ss_pred -CCCCcccccccccccc---ccccCCeEEEEEee
Q 004299 330 -DDPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 330 -~~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
......+.+|+|+..+ .-..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 0123456789998643 23467778887764
No 41
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.23 E-value=0.00023 Score=66.43 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+... .+.|.+.. + .+.-.|.|.|||.||+.+++.+.+...++.+.. ..
T Consensus 48 l~~il~nll~NAik~~~~---------~I~i~~~~--~----~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~ 109 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNG---------WIKVSSGT--E----PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RT 109 (161)
T ss_dssp HHHHHHHHHHHHHTTCCS---------CEEEEEEE--E----TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CC
T ss_pred HHHHHHHHHHHHHhhcCC---------eEEEEEEE--c----CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CC
Confidence 558899999999988732 66776653 1 235679999999999999998888654443321 12
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
-+..|+|+..+ .-.+|.++.+.+..
T Consensus 110 ~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 110 ISGTGLGLAIVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp CCCCSCCCCTTHHHHHHHTSEEEEEEET
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEEECC
Confidence 25678888643 23467777777754
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.21 E-value=0.00047 Score=63.35 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=54.5
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+... +.+.|.+.. + .+.-.|.|.|||.||+.+++.+.+...++... ..
T Consensus 47 l~~il~nLl~NA~~~~~~--------~~I~i~~~~--~----~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~ 108 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGA--------TLVQLSAVS--S----RAGVEIAIDDNGSGVPEGERQVVFERFSRGST----AS 108 (150)
T ss_dssp HHHHHHHHHHHHHHTTCC--------SEEEEEEEE--E----TTEEEEEEEESSSCCCGGGHHHHHTSCC----------
T ss_pred HHHHHHHHHHHHHhcCCC--------cEEEEEEEe--c----CCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CC
Confidence 558899999999998644 145555542 1 23467999999999999999998864442211 11
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
-+..|+|+..+ .-.+|..+.+.+..
T Consensus 109 ~~g~GlGL~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 109 HSGSGLGLALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp -----CCCHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCCcCHHHHHHHHHHcCCEEEEeecC
Confidence 24578888643 23467777776653
No 43
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.20 E-value=0.00069 Score=67.88 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=60.3
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+++.... +.+.|.+.. ..+.-.|+|.|||.||+.+++.+.+..+++.+.
T Consensus 156 l~~il~nLl~NA~~~~~~~-------~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------ 216 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPG-------GRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------ 216 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTT-------CEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------
T ss_pred HHHHHHHHHHHHHHhCCCC-------CEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------
Confidence 5689999999999987652 256666653 123568999999999999999888865554332
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
+..|+|+..+ .-.+|..+.+.+..
T Consensus 217 -~g~GlGL~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 217 -GGPGLGLALVKALVELHGGWVALESEP 243 (268)
T ss_dssp -CCCTTHHHHHHHHHHHTTCEEEEEECT
T ss_pred -CCCcccHHHHHHHHHHcCCEEEEEecC
Confidence 3568888643 34567777777654
No 44
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.19 E-value=0.00025 Score=67.31 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+.... +.+.|.+... ...+.-.|+|.|||.||+.+++.+.+..+++.... ....
T Consensus 44 l~~il~nLl~NAi~~~~~~-------~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~ 111 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEG-------GHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRK 111 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTT-------CCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------
T ss_pred HHHHHHHHHHHHHHhCCCC-------CeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCC
Confidence 4588999999999986542 2566666421 12235679999999999999998888644432211 1233
Q ss_pred ccccccccccc---ccccCCeEEEEEeeC
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQTA 360 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~~ 360 (763)
.+..|+|+..+ .-.+|..+.+.+...
T Consensus 112 ~~g~GlGL~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 112 LGGTGLGLAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEEEETT
T ss_pred CCCCCcCHHHHHHHHHHcCCEEEEEecCC
Confidence 45678888643 234677777776543
No 45
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.17 E-value=0.00023 Score=68.34 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHHHccHHHhhccccc-----ccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHH------------
Q 004299 255 IFGAIAELVDNSRDAKATKLLL-----SIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV------------ 317 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~-----~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~------------ 317 (763)
+..+|.+||+||+.+....... ....+.+.|.+.. + .+.-.|+|.|||.||+++++.
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~--~----~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~ 121 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH--E----GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 121 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE--E----TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe--c----CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhh
Confidence 4467999999999996211000 0001256666553 1 235689999999999999873
Q ss_pred ------------HhhhcccCCCCCCCCCcccccccccccc---ccccCCeEEEEEee
Q 004299 318 ------------RMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 318 ------------~~l~fG~S~K~~~~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
+.|..+++.+. .....+..|+|+..+ .-.+|..+.|.|..
T Consensus 122 ~~~~~~~~~~~~~if~~~~~~~~--~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 122 KAATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSISIESEK 176 (189)
T ss_dssp HHTTCCHHHHHGGGGSTTCSHHH--HHHGGGTCCCHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhcccchhhhHHHhcCCcccccc--cCCCCCCCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 33433333221 111234578888643 23467777777753
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.16 E-value=0.00027 Score=68.38 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+.... +.+.|.+. ...|.|.|||.||+++++.+.+...++.+. ..
T Consensus 118 l~~il~nLl~NAi~~~~~~-------~~i~i~~~----------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~ 176 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQG-------SVVDVTLN----------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QT 176 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTT-------CEEEEEEC----------SSEEEEECSCC-------------------------
T ss_pred HHHHHHHHHHHHHHcCCCC-------CeEEEEEc----------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CC
Confidence 5578999999999987552 13444332 123999999999999999998864444221 12
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
-+..|+|+..+ .-.+|.++.|.|..
T Consensus 177 ~~g~GlGL~i~~~i~~~~gG~i~i~s~~ 204 (222)
T 3jz3_A 177 ATGSGLGLSIVQRIAKLHGMNVEFGNAE 204 (222)
T ss_dssp -----CTHHHHHHHHHHTTCEEECCBCT
T ss_pred CCcccccHHHHHHHHHHcCCEEEEEcCC
Confidence 24578888643 23456666665543
No 47
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.16 E-value=0.0003 Score=75.97 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=64.1
Q ss_pred HHHHHHHHHHccHHHhhcccccc-cccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCC---
Q 004299 255 IFGAIAELVDNSRDAKATKLLLS-IYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 330 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~-l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~--- 330 (763)
+..+|.+||+||+.|........ .....|.|.+.. ..+.-.|.|.|||.||+++++.+.|...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 56899999999999987621000 000146666652 12356799999999999999999987555433210
Q ss_pred ----------------CCCcccccccccccc---ccccCCeEEEEEee
Q 004299 331 ----------------DPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 331 ----------------~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
.....+.+|+|+..+ .-.+|.++.|.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 123346789998643 33468888888764
No 48
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.13 E-value=0.00077 Score=66.15 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=61.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+.... +.+.|.+.. + .+.-.|+|.|||.||+.+++.+.+..+++.+.
T Consensus 124 l~~il~nLl~NA~~~~~~~-------~~i~i~~~~--~----~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~------ 184 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNG-------GTLQVYVSI--D----NGRVLIRIADTGVGMTKEQLERLGEPYFTTKG------ 184 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTC-------EEEEEEEEE--E----TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG------
T ss_pred HHHHHHHHHHHHHHhccCC-------CeEEEEEEE--e----CCEEEEEEEecCCCCCHHHHHHHhcccccCCC------
Confidence 5689999999999987542 256666653 1 23568999999999999999998875554331
Q ss_pred ccccccccccc---ccccCCeEEEEEeeC
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQTA 360 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~~ 360 (763)
.+..|+|+..+ .-.+|..+.+.+...
T Consensus 185 ~~g~GlGL~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 185 VKGTGLGMMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp GGCCSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcchhHHHHHHHHHHcCCEEEEEecCC
Confidence 23468888643 234678888877643
No 49
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.11 E-value=0.00036 Score=70.00 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=58.2
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|..||+||+++...... .+.+.|.+.. ..+.-.|+|.|||.||+++++.+.|...++.+.. ....
T Consensus 139 l~~il~NLl~NAik~~~~~~~----~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~ 207 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAP----DKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYE 207 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCT----TCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC-------
T ss_pred HHHHHHHHHHHHHhcCcCCCC----ceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCC
Confidence 558899999999998643110 0135555442 1234679999999999999999988644433221 1122
Q ss_pred ccccccccccc---ccccCCeEEEEEeeC
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQTA 360 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~~ 360 (763)
.+..|+|+..+ .-..|..+.|.|...
T Consensus 208 ~~G~GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 208 VPGTGLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp ---CCCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcchHHHHHHHHHHHcCCEEEEEecCC
Confidence 34578888643 234678888877643
No 50
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.11 E-value=0.00034 Score=64.29 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=46.2
Q ss_pred HHHHHHHHHHccHHHhhc-ccccccccccEEEEEEeccccc----CCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCC
Q 004299 255 IFGAIAELVDNSRDAKAT-KLLLSIYFGRLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA 329 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~-~~~~~l~~~~i~I~I~~~~d~~----~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~ 329 (763)
+..+|.+||+||+.+... . +.+.|.+....+.. .....-.|.|.|||.||+++++.+.+...++.+.
T Consensus 49 l~~il~nLl~NAik~~~~~~-------~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~- 120 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEG-------GEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGC-------EEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------
T ss_pred HHHHHHHHHHHHHHHhhccC-------CeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-
Confidence 568899999999998764 2 15566555311000 0000357999999999999999888865554331
Q ss_pred CCCCcccccccccccc---ccccCCeEEEEEee
Q 004299 330 DDPNRIGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 330 ~~~~~IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
+..|+|+..+ .-.+|.++.+.+..
T Consensus 121 ------~g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 121 ------GGTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp ---------CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ------CCCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 3578888643 23467888887764
No 51
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.10 E-value=0.00064 Score=62.59 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=53.0
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.|||+||+.+..... ..+.+.|.+.. + .+.-.|+|.|||.||+ ++.+.+...++.+. .
T Consensus 40 l~~il~~l~~Nai~h~~~~~----~~~~I~i~~~~--~----~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~ 102 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNND----PNGIVSISVII--E----DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----E 102 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTC----TTSEEEEEEEE--E----TTEEEEEEEECSSCCS--CHHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHHhcCCC----CCCEEEEEEEE--e----CCEEEEEEEECCCCcC--hHHHhhcccccCCC-----C
Confidence 56899999999998865411 01256666653 1 2356799999999999 77777764444332 2
Q ss_pred cccccccccccccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTGAMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsAsmrLG~~v~V~SK~ 359 (763)
.+..|+|+..+-- +.+.+.+.+..
T Consensus 103 ~~~~GlGL~iv~~-~~~~i~~~~~~ 126 (145)
T 1th8_A 103 LERSGMGFTIMEN-FMDEVIVESEV 126 (145)
T ss_dssp -CCCSCHHHHHHH-HSSEEEEEEET
T ss_pred CCCCcchHHHHHH-HHheEEEEeCC
Confidence 2346888875433 33466665543
No 52
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.91 E-value=0.0011 Score=71.94 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHHccHHHhhcccc----cc-cccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHH------------
Q 004299 255 IFGAIAELVDNSRDAKATKLL----LS-IYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV------------ 317 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~----~~-l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~------------ 317 (763)
+..+|.+||.||++++..... .. ...+.+.|.+.. .++.-.|+|.|||.||+++.+.
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 446799999999999721100 00 012356665542 1235679999999999999883
Q ss_pred ------------HhhhcccCCCCCCCCCccccccccccc---cccccCCeEEEEEeeC
Q 004299 318 ------------RMTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTA 360 (763)
Q Consensus 318 ------------~~l~fG~S~K~~~~~~~IGqFGiGfKs---AsmrLG~~v~V~SK~~ 360 (763)
..|..|++.+.. ....+..|+|+.. ..-.+|..+.|.|...
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~~--~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKEK--VSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhcCCHHHHHHHhcCCCCccCCc--cCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 345555554432 2345667999853 3345788888888653
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.64 E-value=0.0012 Score=59.77 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..++.|||+||+.+... +.+.|.+.. + .+.-.|+|.|||.||+++++
T Consensus 41 l~~il~nll~Na~k~~~~--------~~i~i~~~~--~----~~~~~i~V~D~G~Gi~~~~~------------------ 88 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQA--------KTCRVDIQQ--L----WKEVVITVSDDGTFKGEENS------------------ 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCC--------SEEEEEEEE--E----TTEEEEEEEESSCCCSCSSC------------------
T ss_pred HHHHHHHHHHHHHhcCCC--------cEEEEEEEE--e----CCEEEEEEEECCcCcCcccC------------------
Confidence 567899999999998633 156666653 1 23568999999999998654
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
+..|+|+..+ .-.+|..+.+.|..
T Consensus 89 -~g~GlGL~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 89 -FSKGHGLLGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp -CCTTSHHHHHHHHHHHTTCEEEEECSS
T ss_pred -CCCCccHHHHHHHHHHcCCEEEEEeCC
Confidence 2357887532 23467777776654
No 54
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.50 E-value=0.0027 Score=61.68 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=45.5
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
++.++.|||+||+.+... +.+.|.+.. + .+.-.|+|.|||.||+++.+
T Consensus 131 l~~il~nll~Na~k~~~~--------~~i~i~~~~--~----~~~~~i~V~D~G~Gi~~~~~------------------ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQA--------KTCRVDIQQ--L----WKEVVITVSDDGTFKGEENS------------------ 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCC--------SEEEEEEEE--E----TTEEEEEEEESSCCCC----------------------
T ss_pred HHHHHHHHHHHHHHhCCC--------CEEEEEEEE--e----CCEEEEEEEECCcCCCCCCC------------------
Confidence 457899999999998643 156666653 1 23568999999999999875
Q ss_pred ccccccccccc---ccccCCeEEEEEee
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQT 359 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~ 359 (763)
+..|+|+..+ .-.+|..+.|.|..
T Consensus 179 -~g~GlGL~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 179 -FSKGHGLLGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp -----CHHHHHHHHHHHTTCEEEEECSS
T ss_pred -CCCCCCHHHHHHHHHHcCCEEEEeCCC
Confidence 2347787532 23467777777655
No 55
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.47 E-value=0.0011 Score=68.70 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=56.4
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..+|.+||+||+.+.... +.+.|.+.. ..+.-.|+|.|||.||+++++.+.|..+++.+.
T Consensus 245 l~~vl~nLl~NA~k~~~~~-------~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~------ 305 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGEN-------GKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------ 305 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTT-------CCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC--------
T ss_pred HHHHHHHHHHHHHHhccCC-------CEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC------
Confidence 5689999999999997431 266666653 123568999999999999999888875555432
Q ss_pred ccccccccccc--cc--ccCCeEEEEEe
Q 004299 335 IGRFGVGFKTG--AM--RLGKDALVLTQ 358 (763)
Q Consensus 335 IGqFGiGfKsA--sm--rLG~~v~V~SK 358 (763)
+..|+|+..+ .+ ..|..+.+.+.
T Consensus 306 -~g~GlGL~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 306 -QGTGLGLSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp -----CCCTHHHHHHHHTTCSBCCEEEC
T ss_pred -CCccchHHHHHHHHHHhCCCEEEEEeC
Confidence 2458888643 12 36777776664
No 56
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.03 E-value=0.0026 Score=56.81 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCC
Q 004299 254 WIFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPN 333 (763)
Q Consensus 254 w~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~ 333 (763)
++..++.+||+||+.+... +.+.|.+.. ..+ -.|+|.|||.||++++
T Consensus 43 ~l~~il~nll~NA~k~~~~--------~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~------------------ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAA--------STLTVRVKV------DDD-LCIEVTDNGRGMPDEF------------------ 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSC--------CEEEEEEEE------SSE-EEEEEEECCCCCTTTT------------------
T ss_pred HHHHHHHHHHHHHHHhCCC--------ceEEEEEEE------cCC-EEEEEecCCCCCCccc------------------
Confidence 4668999999999987632 266666653 123 6899999999998764
Q ss_pred cccccccccccc---ccccCCeEEEEEeeC
Q 004299 334 RIGRFGVGFKTG---AMRLGKDALVLTQTA 360 (763)
Q Consensus 334 ~IGqFGiGfKsA---smrLG~~v~V~SK~~ 360 (763)
.|+|+..+ .-.+|.++.+.+...
T Consensus 90 ----~GlGL~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 90 ----TGSGLTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp ----CSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ----CCcCHHHHHHHHHHcCCEEEEeeCCC
Confidence 47887532 234677777777654
No 57
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.039 Score=68.41 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=54.3
Q ss_pred HHHHHHHHHHccHHHh-hcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHH--------HHHhhh-ccc
Q 004299 255 IFGAIAELVDNSRDAK-ATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGH 324 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~-A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~ 324 (763)
+.--+-|+||||+|.. +-.. ...|.|.|+. +...|+|.|||.||+-+. +.-+|+ +..
T Consensus 60 L~hl~~EildNsiDea~ag~~-----~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhA 126 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPS-----MKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 126 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-----CCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred eeeEeeEEEEChHhHHhhCCC-----CCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeecccccc
Confidence 3456899999999953 3210 0146666652 146899999999998642 112333 222
Q ss_pred CCCCCC--CCCccccccccccccccccCCeEEEEEe
Q 004299 325 KQPDAD--DPNRIGRFGVGFKTGAMRLGKDALVLTQ 358 (763)
Q Consensus 325 S~K~~~--~~~~IGqFGiGfKsAsmrLG~~v~V~SK 358 (763)
+.|... -.-+-|..|+|.+-+- .|+..+.|.+.
T Consensus 127 GgKFd~~~ykvSGGLHGVG~svVN-ALS~~~~vev~ 161 (1177)
T 4gfh_A 127 SSNYDDDEKKVTGGRNGYGAKLCN-IFSTEFILETA 161 (1177)
T ss_dssp ESCCCCSSCCCCSCCSSCHHHHHH-HTEEEEEEEEE
T ss_pred ccCcCCCCCeEeccCCChhhhHHh-hcCCceEEEEE
Confidence 333322 2456799999986433 36777776664
No 58
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=94.83 E-value=0.014 Score=51.69 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhcccCCCCCCCCCc
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNR 334 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~S~K~~~~~~~ 334 (763)
+..++.||++||+.+... +.+.|.+.. + .+ -.|+|.|||.||+++.
T Consensus 40 l~~il~nll~Na~k~~~~--------~~i~i~~~~--~----~~-~~i~v~D~G~gi~~~~------------------- 85 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHANA--------TSLAINVSV--E----DD-VRVEVVDDGVGISGDI------------------- 85 (124)
T ss_dssp HHHHHHHHHHHHHTCTTC--------CEEEEEEEE--E----EE-EEEEEEECCCSSCGGG-------------------
T ss_pred HHHHHHHHHHHHHHhCCC--------CEEEEEEEe--C----CC-EEEEEEECCCCCCccc-------------------
Confidence 568899999999987643 156666652 1 23 6899999999999875
Q ss_pred ccccccccccc---ccccCCeEEEEEeeC
Q 004299 335 IGRFGVGFKTG---AMRLGKDALVLTQTA 360 (763)
Q Consensus 335 IGqFGiGfKsA---smrLG~~v~V~SK~~ 360 (763)
-|+|+..+ .-.+|..+.+.+...
T Consensus 86 ---~GlGL~~~~~~~~~~gG~i~~~~~~~ 111 (124)
T 3zxq_A 86 ---TESGLRNLRQRADDAGGEFTVENMPT 111 (124)
T ss_dssp ---SHHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred ---cccCHHHHHHHHHHhCCEEEEEEcCC
Confidence 17777532 234666777766543
No 59
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.91 E-value=0.043 Score=55.44 Aligned_cols=84 Identities=10% Similarity=-0.077 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCC--CCHHHHHHhhhcccCCCCCCCC
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDP 332 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~G--Mt~eeL~~~l~fG~S~K~~~~~ 332 (763)
...++.-||+||++|... .+.+.|.+.. ..+.-.|+|.|+|.| |+++.+...+.-..+.+
T Consensus 147 ~~qvl~NLl~NA~~a~~~-------gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~----- 208 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPA-------GGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG----- 208 (247)
T ss_dssp HHHHHHHHHHHHHTTCTT-------CCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-----
T ss_pred HHHHHHHHHHHHHHhcCC-------CCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-----
Confidence 557889999999988655 2356666653 124568999999977 66766666654222221
Q ss_pred Ccccccccccccc---ccccCCeEEEEEe
Q 004299 333 NRIGRFGVGFKTG---AMRLGKDALVLTQ 358 (763)
Q Consensus 333 ~~IGqFGiGfKsA---smrLG~~v~V~SK 358 (763)
.+-.|+|+..+ .-..|.++.|.|.
T Consensus 209 --~~G~GLGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 209 --LGGPWVQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred --CCCccHHHHHHHHHHHHcCCEEEEEEc
Confidence 23358888632 3456888888764
No 60
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.11 E-value=0.021 Score=67.87 Aligned_cols=45 Identities=42% Similarity=0.893 Sum_probs=36.8
Q ss_pred Cceeecc--cchhhccCCCCCC-CCCCCCCccccCCCC-------CCCCCCCccc
Q 004299 653 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQK 697 (763)
Q Consensus 653 ~~WVQCd--~C~KWR~Lp~~~~-~~~lp~~W~C~mnp~-------~~sC~~pEe~ 697 (763)
.-|+||- .|.|||+||.... ...++.+..|.|-++ ...|+.||+.
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 145 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDL 145 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCccc
Confidence 4899999 9999999998865 356788999998642 3679999974
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=91.28 E-value=0.1 Score=43.67 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.2
Q ss_pred CCceeecccchhhccCC-CCCCCCCCCCCcccc
Q 004299 652 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 683 (763)
Q Consensus 652 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 683 (763)
...+||||.|..|-.+. -++.....|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999998877 344445678999995
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=90.21 E-value=0.11 Score=41.03 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.2
Q ss_pred CCceeecccchhhccCC-CCCCCCCCCCCcccc
Q 004299 652 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 683 (763)
Q Consensus 652 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 683 (763)
+..+||||.|..|-.+. -++.....|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 46899999999998887 344444678999985
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.23 E-value=0.2 Score=40.88 Aligned_cols=34 Identities=18% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCceeecccchhhccCCC-CCCC--CCCCCCccccC
Q 004299 651 PDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWFCYM 684 (763)
Q Consensus 651 ~~~~WVQCd~C~KWR~Lp~-~~~~--~~lp~~W~C~m 684 (763)
+...|||||.|..|=...= ++.. ...++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 4578999999999977652 3332 23468999853
No 64
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.31 E-value=0.31 Score=40.86 Aligned_cols=31 Identities=23% Similarity=0.847 Sum_probs=23.3
Q ss_pred CceeecccchhhccCCC-CCCC-CCCCCCcccc
Q 004299 653 QEWVQCNKCRKWRMLDP-GFDT-KSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~C~KWR~Lp~-~~~~-~~lp~~W~C~ 683 (763)
..|||||.|..|-.+.= ++.. ...|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 47999999999987762 3332 3578999995
No 65
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.05 E-value=0.26 Score=44.02 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=25.7
Q ss_pred CCceeecccchhhccCC-CCCCCCCCCCCccccC
Q 004299 652 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 684 (763)
Q Consensus 652 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~m 684 (763)
...+||||.|.+|-.+. .++.....|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3444467789999964
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=87.12 E-value=0.76 Score=50.02 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHH
Q 004299 255 IFGAIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 314 (763)
Q Consensus 255 ~f~AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~e 314 (763)
+..++.||+.||+..+-... ..+.+.|.+.. . ..+.-.|+|.|+|.|+++.
T Consensus 298 ~~l~v~El~~Nav~Ha~~~~----~~g~i~v~~~~--~---~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 298 IVHAISEFVENAVEHGYATD----VSKGIVVAAAL--A---GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHBCCSC----CTTCEEEEEEE--C---TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHhcccCC----CCceEEEEEEE--c---CCCEEEEEEEECCCCCCCC
Confidence 45799999999999863210 01266776663 1 1234689999999999876
No 67
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=82.73 E-value=0.31 Score=38.46 Aligned_cols=35 Identities=26% Similarity=0.677 Sum_probs=23.5
Q ss_pred CCCCCceeecc-cchhhccCCC-CCCC-CCCCCCcccc
Q 004299 649 YKPDQEWVQCN-KCRKWRMLDP-GFDT-KSLPVEWFCY 683 (763)
Q Consensus 649 ~~~~~~WVQCd-~C~KWR~Lp~-~~~~-~~lp~~W~C~ 683 (763)
+.++..||||| .|..|=.+.= ++.. ...+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 44467899999 8999977653 3321 1124789885
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=79.11 E-value=1.3 Score=44.00 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=35.0
Q ss_pred HHHHHHHccHHHhhcccccccccccEEEEEEecccccCCCCCCEEEEEECCCCCCHHHHHHhhhccc
Q 004299 258 AIAELVDNSRDAKATKLLLSIYFGRLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 324 (763)
Q Consensus 258 AIaELIDNAiDA~A~~~~~~l~~~~i~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~ 324 (763)
.+..|++||.+|...... .-....+.|.+.. + ..++...|.|.|+|.|++.+.+.++|.-|+
T Consensus 109 ~lgnLi~na~~Ai~~~~~-~~~~~~I~i~i~~--~--~~~~~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVS-RESENHLTVSLQT--D--HPDRQLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp HHHHHHHHHHHHHHHHBC-TTSCCEEEEEEEC--C--CSSSSCEEEEEEESCBSCGGGCC-------
T ss_pred HHHHHHHHHHHHHHhhhc-cCCCCeEEEEEEE--e--cCCCEEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 356788888888643100 0012256676652 1 002468899999999999998877775444
No 69
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=77.69 E-value=0.56 Score=39.67 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCCceeecccchhhccCC-CCCCCC--CCCCCcccc
Q 004299 650 KPDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCY 683 (763)
Q Consensus 650 ~~~~~WVQCd~C~KWR~Lp-~~~~~~--~lp~~W~C~ 683 (763)
..+..|||||.|..|=... -++... ..++.|+|.
T Consensus 20 ~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 20 DVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp CTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 3467999999999997654 122222 234789885
No 70
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.20 E-value=0.34 Score=41.39 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCceeecccchhhccCC-CCCCC--CCCCCCcccc
Q 004299 651 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCY 683 (763)
Q Consensus 651 ~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~ 683 (763)
....|||||.|..|=... .++.. ...++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 367899999999996543 12221 2346899986
No 71
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=72.65 E-value=2 Score=35.62 Aligned_cols=32 Identities=22% Similarity=0.768 Sum_probs=23.6
Q ss_pred CCceeecc--cchhhccCC-CCCC-----CCCCCCCcccc
Q 004299 652 DQEWVQCN--KCRKWRMLD-PGFD-----TKSLPVEWFCY 683 (763)
Q Consensus 652 ~~~WVQCd--~C~KWR~Lp-~~~~-----~~~lp~~W~C~ 683 (763)
+..+|||| .|..|-+.. -++. ....|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45899999 599998877 2331 24578899995
No 72
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.88 E-value=1.2 Score=37.87 Aligned_cols=33 Identities=21% Similarity=0.701 Sum_probs=23.8
Q ss_pred CCCceeecc--cchhhccCC-CCCCC------CCCCCCcccc
Q 004299 651 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCY 683 (763)
Q Consensus 651 ~~~~WVQCd--~C~KWR~Lp-~~~~~------~~lp~~W~C~ 683 (763)
.+..||||| .|..|-++. -++.. ...|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 456899999 999997764 12221 1578999995
No 73
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=68.89 E-value=1.3 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.722 Sum_probs=20.4
Q ss_pred CCceeecccchhhccCC-CCCCC-CCCCCCcccc
Q 004299 652 DQEWVQCNKCRKWRMLD-PGFDT-KSLPVEWFCY 683 (763)
Q Consensus 652 ~~~WVQCd~C~KWR~Lp-~~~~~-~~lp~~W~C~ 683 (763)
...|||||.|..|=.+. .++.. ....+.|||.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34799999999996543 12211 1223789995
No 74
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=68.51 E-value=0.9 Score=43.86 Aligned_cols=34 Identities=21% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCCceeecccchhhccCCC-CCCC--CCCCCCccccC
Q 004299 651 PDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWFCYM 684 (763)
Q Consensus 651 ~~~~WVQCd~C~KWR~Lp~-~~~~--~~lp~~W~C~m 684 (763)
....|||||.|..|=+..= ++.. ...++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 3568999999999955431 2211 24578999864
No 75
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=68.19 E-value=1.9 Score=35.72 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.6
Q ss_pred CCCCCceeecc-cchhhccC
Q 004299 649 YKPDQEWVQCN-KCRKWRML 667 (763)
Q Consensus 649 ~~~~~~WVQCd-~C~KWR~L 667 (763)
+.++..||||| .|.+|=..
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 55678999999 99999543
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.64 E-value=4.8 Score=35.60 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.5
Q ss_pred Cceeeccc--ch-hhccCCC-CCCCCCCCCCcccc
Q 004299 653 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 683 (763)
..+||||. |. .|=++.= ++. ...+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECc
Confidence 47999999 76 8966652 222 2335799996
No 77
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.48 E-value=6.7 Score=32.92 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.7
Q ss_pred Cceeeccc--ch-hhccCCC-CCCCCCCCCCcccc
Q 004299 653 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 683 (763)
..+||||. |. .|=++.= ++. ....++|||.
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 57999999 87 7977652 332 2234899995
No 78
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.41 E-value=4.1 Score=34.23 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCceeecccchhhccCC-CCCCCC------CCCCCcccc
Q 004299 652 DQEWVQCNKCRKWRMLD-PGFDTK------SLPVEWFCY 683 (763)
Q Consensus 652 ~~~WVQCd~C~KWR~Lp-~~~~~~------~lp~~W~C~ 683 (763)
...|||||.|..|-+.. -++... ..++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45899999999996654 122211 136789985
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=46.64 E-value=6.7 Score=32.07 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=20.1
Q ss_pred Cceeeccc--ch-hhccCCC-CCCCCCCCCCcccc
Q 004299 653 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 683 (763)
..+||||. |. .|=++.= ++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 9976652 232 2235799985
No 80
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=45.89 E-value=7.5 Score=44.33 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=25.8
Q ss_pred CCCCCceeecccchhhccCC-CCCCC--CCCCCCccccC
Q 004299 649 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 684 (763)
Q Consensus 649 ~~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 684 (763)
.-++..|||||.|..|=... -++.. ....++|+|..
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34678999999999998764 33332 34568999944
No 81
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=45.39 E-value=7.5 Score=31.43 Aligned_cols=30 Identities=23% Similarity=0.724 Sum_probs=20.0
Q ss_pred Cceeeccc--ch-hhccCCC-CCCCCCCCCCcccc
Q 004299 653 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 683 (763)
..+||||. |. .|=++.= ++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 47999999 77 7976652 232 2233789994
No 82
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=41.91 E-value=13 Score=37.17 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 004299 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (763)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (763)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 5599999999999999998 5999999997
No 83
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=41.27 E-value=13 Score=32.79 Aligned_cols=30 Identities=20% Similarity=0.611 Sum_probs=20.0
Q ss_pred Cceeecccch---hhccCCC-CCCCCCCCCCcccc
Q 004299 653 QEWVQCNKCR---KWRMLDP-GFDTKSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~C~---KWR~Lp~-~~~~~~lp~~W~C~ 683 (763)
..+|+||.|. .|=++.= ++. ....++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 3699999976 8976652 332 2223689985
No 84
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=41.25 E-value=9.3 Score=37.75 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=13.7
Q ss_pred CceeecccchhhccCC
Q 004299 653 QEWVQCNKCRKWRMLD 668 (763)
Q Consensus 653 ~~WVQCd~C~KWR~Lp 668 (763)
..|||||.|..|=...
T Consensus 19 ~~MIqCd~C~~W~H~~ 34 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSK 34 (183)
T ss_dssp CCEEECTTTCCEEEGG
T ss_pred CCeEECCCCCcccchh
Confidence 3599999999998765
No 85
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=37.97 E-value=4.7 Score=45.56 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCCCceeecccchhhccCC-CCCCC--CCCCCCccccC
Q 004299 650 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 684 (763)
Q Consensus 650 ~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~m 684 (763)
.+...|||||.|..|=... -++.. ...++.|+|..
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 3467899999999997654 23322 23468899954
No 86
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=36.71 E-value=12 Score=30.17 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=20.0
Q ss_pred Cceeeccc--ch-hhccCC-CCCCCCCCCCCcccc
Q 004299 653 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 683 (763)
Q Consensus 653 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 683 (763)
...|+||. |. .|=.+. .++. ....++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 57999999 66 897665 2222 2224799995
No 87
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=36.01 E-value=12 Score=33.62 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=22.2
Q ss_pred CCCCCceeecc-cchhhccCC-CCCCCC-------CCCCCcccc
Q 004299 649 YKPDQEWVQCN-KCRKWRMLD-PGFDTK-------SLPVEWFCY 683 (763)
Q Consensus 649 ~~~~~~WVQCd-~C~KWR~Lp-~~~~~~-------~lp~~W~C~ 683 (763)
|.++..||||| .|..|=... -++... +..+.|+|.
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 33566899998 999996653 122210 223789984
No 88
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=33.67 E-value=9.9 Score=35.24 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 004299 83 DHNEWRRFLIYLQGRD 98 (763)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (763)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998775
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.35 E-value=12 Score=33.40 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.5
Q ss_pred eeecccchhhcc
Q 004299 655 WVQCNKCRKWRM 666 (763)
Q Consensus 655 WVQCd~C~KWR~ 666 (763)
.||||.|..|=+
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
No 90
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.71 E-value=13 Score=31.08 Aligned_cols=31 Identities=23% Similarity=0.600 Sum_probs=20.0
Q ss_pred CCceeecccch---hhccCC-CCCCCCCCCCCcccc
Q 004299 652 DQEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 683 (763)
Q Consensus 652 ~~~WVQCd~C~---KWR~Lp-~~~~~~~lp~~W~C~ 683 (763)
...+||||.|. .|=.+. .++. ....++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccC-cCCCCCEECC
Confidence 34899999974 786554 1222 2336799985
Done!