Query 004300
Match_columns 762
No_of_seqs 221 out of 582
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.0 0.016 5.4E-07 51.3 7.2 68 637-711 7-76 (86)
2 1vd2_A Protein kinase C, IOTA 95.7 0.025 8.4E-07 50.1 7.3 55 636-697 6-60 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.1 0.021 7.2E-07 51.6 5.0 62 634-701 3-80 (102)
4 2ktr_A Sequestosome-1; autopha 94.9 0.025 8.5E-07 52.5 5.0 61 634-701 18-95 (117)
5 1oey_J P40-PHOX, neutrophil cy 93.8 0.075 2.6E-06 48.6 5.3 52 652-729 28-79 (107)
6 1q1o_A Cell division control p 93.7 0.16 5.4E-06 45.9 7.3 73 636-710 5-85 (98)
7 4b8c_D Glucose-repressible alc 93.4 0.049 1.7E-06 61.4 4.3 8 694-701 597-604 (727)
8 4b8c_D Glucose-repressible alc 92.2 0.048 1.6E-06 61.5 2.1 8 122-129 48-55 (727)
9 1pqs_A Cell division control p 89.0 0.78 2.7E-05 39.6 6.3 58 651-710 6-64 (77)
10 1oey_A P67-PHOX, neutrophil cy 88.1 1.5 5.2E-05 38.4 7.5 70 637-715 6-78 (83)
11 1wj6_A KIAA0049 protein, RSGI 82.5 2.1 7.2E-05 39.0 5.9 63 638-711 16-79 (101)
12 2bkf_A Zinc-finger protein NBR 78.4 3.7 0.00013 36.5 6.0 52 638-698 8-60 (87)
13 3o27_A Putative uncharacterize 43.6 11 0.00037 32.4 2.0 29 664-698 31-59 (68)
14 2npt_A Dual specificity mitoge 39.9 51 0.0018 30.1 5.9 51 640-698 20-70 (106)
15 1e8p_A Endoglucanase, dockerin 37.1 10 0.00034 30.4 0.8 14 685-698 20-33 (46)
16 1wgr_A Growth factor receptor- 36.2 46 0.0016 30.0 5.1 39 634-672 7-45 (100)
17 1yel_A AT1G16640; CESG, protei 33.6 20 0.00069 31.1 2.3 31 676-708 44-74 (104)
18 3k7i_B IHH, HHG-2, indian hedg 22.7 33 0.0011 34.2 1.8 37 647-691 132-168 (187)
19 2yim_A Probable alpha-methylac 22.5 29 0.00099 36.8 1.5 65 647-711 180-253 (360)
20 2fwh_A Thiol:disulfide interch 21.6 1.1E+02 0.0037 26.3 4.7 44 662-713 79-126 (134)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.99 E-value=0.016 Score=51.32 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=50.1
Q ss_pred ceEEEeecCcccc-eeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecCC-CChhhhhhcce
Q 004300 637 TFTKVQKRGSVGR-SIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGD-DPWDEFVSCVQ 711 (762)
Q Consensus 637 ~yVKV~MdGaVGR-kVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVGD-vPWe~Fv~sVK 711 (762)
.=||..-++.+=| .||-....+|++|+..|+++|.+. ..++.+.|.|.|||++-+-+ +-..+=+.++|
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence 3456555555533 566667789999999999999853 24689999999999988764 45555556666
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.72 E-value=0.025 Score=50.10 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=41.5
Q ss_pred cceEEEeecCcccceeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEe
Q 004300 636 RTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILL 697 (762)
Q Consensus 636 r~yVKV~MdGaVGRkVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~ML 697 (762)
..=|||+-.|.+ |.+.+..--+|++|+.+|.++|.+.. +..+++.|.|.|||+.-
T Consensus 6 ~vkvK~~~~gdi-~~~~v~~~i~~~~L~~kv~~~~~~~~------~~~f~lky~DEeGD~it 60 (89)
T 1vd2_A 6 QVRVKAYYRGDI-MITHFEPSISFEGLCNEVRDMCSFDN------EQLFTMKWIDEEGDPCT 60 (89)
T ss_dssp CEEEEEESSSCE-EEEEECTTCCHHHHHHHHHHHTTCCS------SCCEEEEECCSSSCCEE
T ss_pred eEEEEEEeCCeE-EEEECCCCCCHHHHHHHHHHHhCCCC------CCeEEEEEECCCCCccc
Confidence 345788888852 24444445699999999999999742 34689999999999943
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.13 E-value=0.021 Score=51.63 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=44.2
Q ss_pred CccceEEEeecC-----cccceeecCC-----------CCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEe
Q 004300 634 RMRTFTKVQKRG-----SVGRSIDVTR-----------YKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILL 697 (762)
Q Consensus 634 ~~r~yVKV~MdG-----aVGRkVDLs~-----------y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~ML 697 (762)
.+..-||++-.| .-=|++-|.. ..+|++|+..+.++|.- | .+..|.|.|.|.|||+.-
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l---~~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---L---RPGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S---CSSCEEEEEECTTCCEEE
T ss_pred CceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc---c---CCCcEEEEEECCCCCEEE
Confidence 456778988764 2345544432 24899999999999962 1 124699999999999977
Q ss_pred cCCC
Q 004300 698 VGDD 701 (762)
Q Consensus 698 VGDv 701 (762)
+.++
T Consensus 77 iSsD 80 (102)
T 2kkc_A 77 FSSD 80 (102)
T ss_dssp ECSH
T ss_pred ecCH
Confidence 6653
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=94.93 E-value=0.025 Score=52.46 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=43.7
Q ss_pred CccceEEEeecC-----cccceeecC-----------CCCCHHHHHHHHHHHhc-ccCccCCCCCCCcEEEEEeCCCCeE
Q 004300 634 RMRTFTKVQKRG-----SVGRSIDVT-----------RYKGYDELRHDLARMFG-IEGQLEDPQSSDWKLVYVDHENDIL 696 (762)
Q Consensus 634 ~~r~yVKV~MdG-----aVGRkVDLs-----------~y~sY~eL~~~Le~MFg-ieg~Led~~~s~w~LvYeD~EGD~M 696 (762)
-+..-||++-.| .-=|++=|. .-.+|++|+..+.++|. +. +..|.|.|.|.|||+.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 456789999875 233554443 13599999999999995 33 2469999999999997
Q ss_pred ecCCC
Q 004300 697 LVGDD 701 (762)
Q Consensus 697 LVGDv 701 (762)
-+..+
T Consensus 91 tISsD 95 (117)
T 2ktr_A 91 AFSSD 95 (117)
T ss_dssp EECSH
T ss_pred EecCH
Confidence 66643
No 5
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.78 E-value=0.075 Score=48.65 Aligned_cols=52 Identities=29% Similarity=0.371 Sum_probs=45.2
Q ss_pred ecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecCCCChhhhhhcceEeEEechhhhhhccCCCC
Q 004300 652 DVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGD 729 (762)
Q Consensus 652 DLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVGDvPWe~Fv~sVKRIrIms~sEv~~m~~~~~ 729 (762)
||+.--.|+||..-..+-|..+ +-.|-|.|.|||+ |||+..+++.-|-..++
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDL-----------------IrilddeDv~lmi~~sr 79 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDL-----------------VRLLSDEDVALMVRQAR 79 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCE-----------------EECCSHHHHHHHHHHCC
T ss_pred ccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCE-----------------EEEcchHHHHHHHHHhh
Confidence 5677789999999999999833 4589999999999 99999999999977654
No 6
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=93.73 E-value=0.16 Score=45.90 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=54.1
Q ss_pred cceEEEeecC-----ccc--ceeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecCC-CChhhhh
Q 004300 636 RTFTKVQKRG-----SVG--RSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGD-DPWDEFV 707 (762)
Q Consensus 636 r~yVKV~MdG-----aVG--RkVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVGD-vPWe~Fv 707 (762)
..-|||+-.+ .++ |.|=+..--+|.+|+.++.+-|++... ++. +...+|-|.|.|||+..+++ +=|++=+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-~~i-~~~~klkYkDEdGD~Vtl~sddDl~~A~ 82 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-NNI-SPITKIKYQDEDGDFVVLGSDEDWNVAK 82 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-SCC-CCCCCEEEECSSSCEEEECSHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-ccc-cceeEEEEEcCCCCEEEEcCHHHHHHHH
Confidence 3457777553 134 667677888999999999999997611 111 24579999999999988886 5899877
Q ss_pred hcc
Q 004300 708 SCV 710 (762)
Q Consensus 708 ~sV 710 (762)
.++
T Consensus 83 e~~ 85 (98)
T 1q1o_A 83 EML 85 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 7
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.39 E-value=0.049 Score=61.40 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=0.0
Q ss_pred CeEecCCC
Q 004300 694 DILLVGDD 701 (762)
Q Consensus 694 D~MLVGDv 701 (762)
-++++||.
T Consensus 597 pvIl~GDF 604 (727)
T 4b8c_D 597 PVLICGDF 604 (727)
T ss_dssp --------
T ss_pred ceEEeccc
Confidence 45666663
No 8
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=92.17 E-value=0.048 Score=61.51 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 004300 122 QQQLQHLL 129 (762)
Q Consensus 122 Qqqlq~~~ 129 (762)
++|+|...
T Consensus 48 ~~~~~~~~ 55 (727)
T 4b8c_D 48 KLQLHLAA 55 (727)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444333
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=89.00 E-value=0.78 Score=39.57 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=43.4
Q ss_pred eecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecCC-CChhhhhhcc
Q 004300 651 IDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGD-DPWDEFVSCV 710 (762)
Q Consensus 651 VDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVGD-vPWe~Fv~sV 710 (762)
|=+..--+|.+|+..+.+-|++. .. +..+...+|-|.|.|||+...++ +=|.+=+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~-~~-~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT-HN-NNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT-TS-SCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccc-cc-ccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33445567999999999999965 11 11135679999999999987775 6899877765
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.08 E-value=1.5 Score=38.44 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=55.2
Q ss_pred ceEEEeecCcccceeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEe-CCCCeEecCCCChhhhhhcce--Ee
Q 004300 637 TFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVD-HENDILLVGDDPWDEFVSCVQ--SI 713 (762)
Q Consensus 637 ~yVKV~MdGaVGRkVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD-~EGD~MLVGDvPWe~Fv~sVK--RI 713 (762)
.-|||+-. +--.|.+..=-+|.+|+..|.+-|.+-++ .-+|-|.| .+|+|++.||.=|+.-...|+ ||
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~L 76 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCL 76 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEE
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHHHHHhccCCcE
Confidence 44677755 67777788888999999999999987532 23899999 688888999999998888755 55
Q ss_pred EE
Q 004300 714 KI 715 (762)
Q Consensus 714 rI 715 (762)
++
T Consensus 77 tL 78 (83)
T 1oey_A 77 TL 78 (83)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 11
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=82.54 E-value=2.1 Score=39.01 Aligned_cols=63 Identities=11% Similarity=0.269 Sum_probs=47.8
Q ss_pred eEEEeecCcccc-eeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecCCCChhhhhhcce
Q 004300 638 FTKVQKRGSVGR-SIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQ 711 (762)
Q Consensus 638 yVKV~MdGaVGR-kVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVGDvPWe~Fv~sVK 711 (762)
-.||.-.|.+=| -|.-.+--++++|...+..+|+++ +++|.|.|.|||-.-| .-+.+|-+.+|
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI--NSQGEYEEALK 79 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECC--CSHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEE--ecHHHHHHHHH
Confidence 468888885433 464455679999999999999984 4589999999999877 44666665544
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=78.38 E-value=3.7 Score=36.52 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=39.7
Q ss_pred eEEEeecCcccc-eeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEec
Q 004300 638 FTKVQKRGSVGR-SIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLV 698 (762)
Q Consensus 638 yVKV~MdGaVGR-kVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLV 698 (762)
-.||.-.|..=| -|.-.+--++++|...+..+|+++ +++|.|.|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 358888884322 354444678999999999999974 4699999999998544
No 13
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=43.64 E-value=11 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEec
Q 004300 664 HDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLV 698 (762)
Q Consensus 664 ~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLV 698 (762)
.+.++-|+|.. +.++.++++|++|++.|+
T Consensus 31 aeI~kaLgIk~------gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 31 KDIAEALDIKP------DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp HHHHHHTTCCT------TCCEEEEEEEETTEEEEE
T ss_pred HHHHHHhCCCC------CCEEEEEEecCCCeEEEE
Confidence 46777777753 347899999999999886
No 14
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=39.89 E-value=51 Score=30.06 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=36.0
Q ss_pred EEeecCcccceeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEec
Q 004300 640 KVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLV 698 (762)
Q Consensus 640 KV~MdGaVGRkVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLV 698 (762)
|+--.|++--.||-...=.|.+|+.++.+..--. .--.+-|||.|||.+-|
T Consensus 20 k~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a--------T~TAFeYEDE~gDRITV 70 (106)
T 2npt_A 20 KIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA--------TTTAFEYEDEDGDRITV 70 (106)
T ss_dssp EETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS--------CCSEEEEECTTSCEEEE
T ss_pred ECCCCCccccccCCcccccHHHHHHHHHHhCccc--------eeeeeeeccccCCeeEE
Confidence 4433358889999888889999999998876421 12367899999997444
No 15
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=37.13 E-value=10 Score=30.44 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=12.0
Q ss_pred EEEEEeCCCCeEec
Q 004300 685 KLVYVDHENDILLV 698 (762)
Q Consensus 685 ~LvYeD~EGD~MLV 698 (762)
.|+|+|.||||-..
T Consensus 20 ~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 20 KVEYTDASGQWGVQ 33 (46)
T ss_dssp CEEEEETTEEEEEE
T ss_pred eEEEEcCCCccccC
Confidence 69999999999654
No 16
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=36.23 E-value=46 Score=29.99 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=31.0
Q ss_pred CccceEEEeecCcccceeecCCCCCHHHHHHHHHHHhcc
Q 004300 634 RMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGI 672 (762)
Q Consensus 634 ~~r~yVKV~MdGaVGRkVDLs~y~sY~eL~~~Le~MFgi 672 (762)
....+||||++..-.+.|++..--+=.++...|..-+.+
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~ 45 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHA 45 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCC
Confidence 345799999887666899999999888888877766654
No 17
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=33.61 E-value=20 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=23.8
Q ss_pred cCCCCCCCcEEEEEeCCCCeEecCCCChhhhhh
Q 004300 676 LEDPQSSDWKLVYVDHENDILLVGDDPWDEFVS 708 (762)
Q Consensus 676 Led~~~s~w~LvYeD~EGD~MLVGDvPWe~Fv~ 708 (762)
|+|+.+..|.+.|.-..|...|.+. |++||.
T Consensus 44 L~~~~G~~W~v~~~~~~~~~~l~~G--W~~Fv~ 74 (104)
T 1yel_A 44 LLDYSGRSWTVRMKKRGEKVFLTVG--WENFVK 74 (104)
T ss_dssp EEETTSCEEEEEEEEETTEEEECTT--HHHHHH
T ss_pred EECCCCCEEEEEEEEECCcEEEccC--hHHHHH
Confidence 5667788999999866677666543 999995
No 18
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=22.69 E-value=33 Score=34.24 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=28.4
Q ss_pred ccceeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeC
Q 004300 647 VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDH 691 (762)
Q Consensus 647 VGRkVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~ 691 (762)
-||.|||+..+...+-+..|++|.-..| -+|++ |+.+
T Consensus 132 EGRAvDIttsdrd~~k~g~LarLAveAG-------FDwV~-Y~sr 168 (187)
T 3k7i_B 132 EGRAVDITTSDRDRNKYGLLARLAVEAG-------FDWVY-YESK 168 (187)
T ss_dssp GTCEEEEEETTCCGGGHHHHHHHHHHTT-------CSEEE-EEET
T ss_pred cceeeEEEecccchhHHHHHHHHHHHcC-------CCEEE-eccC
Confidence 4999999998888877778888776433 37885 8775
No 19
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=22.52 E-value=29 Score=36.81 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=38.2
Q ss_pred ccceeecCCCCCHHHHHHHHHHHhcccCccCC------CCCCCcEEEEEeCCCCeEecC---CCChhhhhhcce
Q 004300 647 VGRSIDVTRYKGYDELRHDLARMFGIEGQLED------PQSSDWKLVYVDHENDILLVG---DDPWDEFVSCVQ 711 (762)
Q Consensus 647 VGRkVDLs~y~sY~eL~~~Le~MFgieg~Led------~~~s~w~LvYeD~EGD~MLVG---DvPWe~Fv~sVK 711 (762)
-|..||++++++--.+.....-.+...|.... ....-|-=+|+-+||-|+.|| |--|+.||+.+-
T Consensus 180 ~Gq~Vdvsl~d~~~~~~~~~~~~~~~~g~~~~r~g~~~~~~~p~y~~y~t~DG~~i~i~~~~~~~w~~l~~~lg 253 (360)
T 2yim_A 180 KGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLG 253 (360)
T ss_dssp CCEEEEEEHHHHHHHHTHHHHHHHHTTSCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCSHHHHHHHHHHHT
T ss_pred CceEEEeeHHHHHHHHhHHHHHHHHcCCCCCCCCCCCCCCCCCCCCeEECCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 58889999887655554433322322221110 111122348999999877776 446999998764
No 20
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=21.62 E-value=1.1e+02 Score=26.31 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeE----ecCCCChhhhhhcceEe
Q 004300 662 LRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDIL----LVGDDPWDEFVSCVQSI 713 (762)
Q Consensus 662 L~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~M----LVGDvPWe~Fv~sVKRI 713 (762)
-..+|.+.|++.+- | .+++.|++|.+. ++|..+.++|.+.++++
T Consensus 79 ~~~~l~~~~~v~~~---P-----t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 79 QDVALLKHLNVLGL---P-----TILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp HHHHHHHHTTCCSS---S-----EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred hHHHHHHHcCCCCC---C-----EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 35567788888653 2 566779999985 89999999998776654
Done!