BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004301
(762 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/667 (39%), Positives = 362/667 (54%), Gaps = 62/667 (9%)
Query: 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACET 166
TTRS +FLG + S S ++VGVLDTG+WPES SFDD G P P WKG CET
Sbjct: 1 TTRSWDFLGFPLTVPR--RSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 167 GTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEG 226
NF CNRK+IGAR + G + G ++ PRD +GHGTHTASTAAG +V
Sbjct: 59 SNNFR---CNRKIIGARSYHIGRPISPGDVN------GPRDTNGHGTHTASTAAGGLVSQ 109
Query: 227 ASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGT- 285
A+L+G YKVCW GC +DILAA + AI D V+++S+S+GG
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 286 SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVS 345
Y+ D++AIG+F A+E+GIL S SAGN GP+ ++ ++++PW+ +V A T+DR F V
Sbjct: 170 RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229
Query: 346 LGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNA----TNGNLCMMDTLIPEKVAGKIVM 401
+GNGQ++ GVS+ D + P V + N + C ++ P + GKIV+
Sbjct: 230 IGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVV 286
Query: 402 CDRGVNARXXXXXXXXXXXXXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLV 461
C+ SN + AD++ LP++ + A Y+
Sbjct: 287 CEASFGPHEFFKSLDGAAGVLM------TSNTRDY-ADSYPLPSSVLDPNDLLATLRYIY 339
Query: 462 SDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVG 521
S P TI F+ T + +PVV +FSSRGPN T +++KPD+ PGV ILA W +V
Sbjct: 340 SIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP-SVA 397
Query: 522 PTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNG 581
P G R FNIISGTSMSCPH++G+A +K +P WSPAAI+SALMTTA S N
Sbjct: 398 PVGGI--RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTA--SPMN- 452
Query: 582 QKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLAR 641
A F +G+GHVNP+ A+ PGLVYD DY+ FLC Y + +
Sbjct: 453 ------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG 506
Query: 642 RKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPG-TYKVFITSS 700
C + + D NYPSF +++ +Q+ + + R+LT+V P TY+ I++
Sbjct: 507 DYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN----QYFNRTLTSVAPQASTYRAMISAP 562
Query: 701 TGPGVKISVEPATLSFTQANEKKSYTVT-------FTVSSMPSNTNSFAHLEWSDGKYIV 753
G+ ISV P LSF ++KS+T+T F VS A L WSDG + V
Sbjct: 563 Q--GLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS---------ASLVWSDGVHYV 611
Query: 754 GSPIAIS 760
SPI I+
Sbjct: 612 RSPITIT 618
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 261/658 (39%), Positives = 365/658 (55%), Gaps = 19/658 (2%)
Query: 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACET 166
TT + +FL L+ S+ L+P SG +VIV VLD+G+WPES SF D G+ +P WKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 167 GTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEG 226
GT FNAS CNRKLIGA YF +G A ++ + S RD DGHGTH AS AG+ +G
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSA--RDTDGHGTHCASITAGNFAKG 118
Query: 227 ASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTS 286
S FGY YK + G F+SD++AA++QA+ D V+++S+S G
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFI 178
Query: 287 DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSL 346
Y+D+++I +F AM KG+LVS SAGN GP SL+N +PWI V +G DR F ++L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGV 406
GNG G SL+ + P +Y S+ ++ L + PE IV+CD
Sbjct: 239 GNGLKIRGWSLFPARAFV-RDSPVIYNKTLSDCSSEEL-LSQVENPENT---IVICDD-- 291
Query: 407 NARXXXXXXXXXXXXXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKP 466
N +E G + P V +K G + +Y+ + P
Sbjct: 292 NGDFSDQMRIITRARLKAAIFISEDPG-VFRSATFPNPGVVVNKKEGKQVINYVKNSVTP 350
Query: 467 TVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLA 526
T TI F+ T + +P+PVVAA S+RGP+ + KPD++APGV ILA + V T +
Sbjct: 351 TATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIG 410
Query: 527 TDSRRVSFNII-SGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQ 585
T+ + I+ SGTSM+ PH +G+AA+LKAAHPEWSP+AIRSA+MTTA + ++
Sbjct: 411 TNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470
Query: 586 DIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFT 645
D KA+TP D GAGHV+P AL+PGLVYD T DY+ LC+LN+T Q ++AR +
Sbjct: 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSAS 530
Query: 646 CDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGP-PGTYKVFITSSTGPG 704
+ S AD NYPSF + + + + + K+ R++TNVG TYK + +
Sbjct: 531 HNCSN--PSADLNYPSF-IALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNS- 586
Query: 705 VKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEW--SDGKYIVGSPIAIS 760
ISV P L F NEK+SYT+T + + + W +G + V SPI S
Sbjct: 587 -TISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITP 498
DA L+ A G Y V P ++ G V+ V+ FSSRGP +
Sbjct: 269 DAGLVVVVAAGNS---GPNKYTVGSPAAASKVITVGA---VDKYDVITDFSSRGPTA--D 320
Query: 499 ELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH 558
LKP+++APG I+A + D + GT+M+ PHV+G+AALL AH
Sbjct: 321 NRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMATPHVAGIAALLLQAH 376
Query: 559 PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSA 608
P W+P +++AL+ TA + + ++ DIA +GAG VN A
Sbjct: 377 PSWTPDKVKTALIETADIVKPD--EIADIA---------YGAGRVNAYKA 415
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 193 LGPIDESKESKSPRDDDGHGTHTASTAAGS----------VVEGASLFGYXXXXXXXXXX 242
+G +D +P DD+GHGTH AS AAG+ + GA L G
Sbjct: 162 IGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAASNGKYKGMAPGAKLVGI---------- 211
Query: 243 XXXXXXYKVCWVGGCFS-SDILAAIEQAIDDN----VNVLSMSLGGGTSDYYKDSVAIGA 297
KV G S SDI+ ++ A+ + + V+++SLG S DS++
Sbjct: 212 -------KVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAV 264
Query: 298 FAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDR 338
A + G++V +AGN+GP+ Y++ + A + G +D+
Sbjct: 265 NNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK 305
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 17/85 (20%)
Query: 491 RGP-NSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSG 549
R P +S+ PEL D++APGV+I + G + +SGTSM+ PHV+G
Sbjct: 177 RAPFSSVGPEL---DVMAPGVSICSTLPGG-------------KYGALSGTSMASPHVAG 220
Query: 550 LAALLKAAHPEWSPAAIRSALMTTA 574
AAL+ + HP W+ +RS+L TA
Sbjct: 221 AAALILSKHPNWTNTQVRSSLENTA 245
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 19/83 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSS 260
E+ +D++ HGTH A T +V ASL+ KV G +
Sbjct: 54 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQA 95
Query: 261 D-ILAAIEQAIDDNVNVLSMSLG 282
I+ IE AI +N++V++MSLG
Sbjct: 96 SWIINGIEWAIANNMDVINMSLG 118
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 17/85 (20%)
Query: 491 RGP-NSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSG 549
R P +S+ PEL D++APGV+I + G + +SGT+M+ PHV+G
Sbjct: 177 RAPFSSVGPEL---DVMAPGVSICSTLPGG-------------KYGALSGTAMASPHVAG 220
Query: 550 LAALLKAAHPEWSPAAIRSALMTTA 574
AAL+ + HP W+ +RS+L TA
Sbjct: 221 AAALILSKHPNWTNTQVRSSLENTA 245
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 19/83 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSS 260
E+ +D++ HGTH A T +V ASL+ KV G +
Sbjct: 54 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQA 95
Query: 261 D-ILAAIEQAIDDNVNVLSMSLG 282
I+ IE AI +N++V++MSLG
Sbjct: 96 SWIINGIEWAIANNMDVINMSLG 118
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G+AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 24/112 (21%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIXSTLPGN-------------KYGAYS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALM-TTAYV--SYKNGQKLQDI 587
GTSM+ PHV+G AAL+ + HP W+ +RS+L TT Y+ S+ G+ L ++
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDSFYYGKGLINV 270
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALDNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVG----GCFS 259
S +D +GHGTH A T A ++ + G Y V +G G S
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGV----------APSAELYAVKVLGADGRGAIS 103
Query: 260 SDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY 319
S I +E A ++ ++V ++SLG S ++ +A +G+LV ++GN+G SS
Sbjct: 104 S-IAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSGASSI 159
Query: 320 SLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349
S VGA + + +F G G
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAG 189
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GTSM+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIXSTLPGN-------------KYGAYS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALDNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSS 260
E+ + +DD+ HGTH A T A ++ + G Y V +G S
Sbjct: 54 ETPNFQDDNSHGTHVAGTVA-ALNNSIGVLGV----------APSSALYAVKVLGDAGSG 102
Query: 261 D---ILAAIEQAIDDNVNVLSMSLGG 283
I+ IE AI +N++V++MSLGG
Sbjct: 103 QYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 171 VDSSNQRASFSSVGP-----EL---DVMAPGVSICSTLPGN-------------KYGAKS 209
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS- 259
E+ +D++ HGTH A T +V ASL+ KV G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQY 95
Query: 260 SDILAAIEQAIDDNVNVLSMSLGG 283
S I+ IE AI +N++V++MSLGG
Sbjct: 96 SWIINGIEWAIANNMDVINMSLGG 119
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSICSTLPGN-------------KYGAKS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALDNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 171 VDSSNQRASFSSVGP-----EL---DVMAPGVSICSTLPGN-------------KYGAKS 209
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS- 259
E+ +D++ HGTH A T +V ASL+ KV G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQY 95
Query: 260 SDILAAIEQAIDDNVNVLSMSLGG 283
S I+ IE AI +N++V++MSLGG
Sbjct: 96 SWIINGIEWAIANNMDVINMSLGG 119
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSICSTLPGN-------------KYGAKS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPCASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I++ G + S
Sbjct: 171 VDSSNQRASFSSVGP-----EL---DVMAPGVSIVSTLPGN-------------KYGAKS 209
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT+M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS- 259
E+ +D++ HGTH A T +V ASL+ KV G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQY 95
Query: 260 SDILAAIEQAIDDNVNVLSMSLGG 283
S I+ IE AI +N++V++MSLGG
Sbjct: 96 SWIINGIEWAIANNMDVINMSLGG 119
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I++ G + S
Sbjct: 171 VDSSNQRASFSSVGP-----EL---DVMAPGVSIVSTLPGN-------------KYGAKS 209
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT+M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 19/79 (24%)
Query: 206 RDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS-SDILA 264
+D++ HGTH A T +V ASL+ KV G S I+
Sbjct: 59 QDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQYSWIIN 100
Query: 265 AIEQAIDDNVNVLSMSLGG 283
IE AI +N++V++MSLGG
Sbjct: 101 GIEWAIANNMDVINMSLGG 119
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPGN-------------KYGAKS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPCASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTSM+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I WS G + S
Sbjct: 168 VDSSNQRASFSSVGP-----EL---DVMAPGVSI---WSTLPGN----------KYGAKS 206
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 207 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 241
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS- 259
E+ +D++ HGTH A T +V ASL+ KV G
Sbjct: 51 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQY 92
Query: 260 SDILAAIEQAIDDNVNVLSMSLGG 283
S I+ IE AI +N++V++MSLGG
Sbjct: 93 SWIINGIEWAIANNMDVINMSLGG 116
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGVN+ + + G+ ++ ++GT M+ PHV+G AAL+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 564 AAIRSALMTTA 574
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS---S 260
S +D +GHGTH A T A ++ + G Y V +G S S
Sbjct: 55 STQDGNGHGTHVAGTIA-ALDNSIGVLGV----------APSAELYAVKVLGASGSGAIS 103
Query: 261 DILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS 320
I +E A ++ ++V ++SLG S ++ +A +G+LV ++GN+G S S
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSGAGSIS 160
Query: 321 LSNVAPWITTVGAGTLDRDFPAFVSLGNG 349
VGA + + +F G G
Sbjct: 161 YPARYANAMAVGATDQNNNRASFSQYGAG 189
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPGN-------------KYGAYS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 171 VDSSNQRASFSSVGP-----EL---DVMAPGVSICSTLPGN-------------KYGAKS 209
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 210 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS- 259
E+ +D++ HGTH A T +V ASL+ KV G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVL-AVAPSASLY-----------------AVKVLGADGSGQY 95
Query: 260 SDILAAIEQAIDDNVNVLSMSLGG 283
S I+ IE AI +N++V++MSLGG
Sbjct: 96 SWIINGIEWAIANNMDVINMSLGG 119
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPGN-------------KYGAYS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPCASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G + S
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPGN-------------KYGAKS 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 26/87 (29%)
Query: 206 RDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGC 257
+D++ HGTH A T A V ASL+ KV G
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVLGADGS 101
Query: 258 FS-SDILAAIEQAIDDNVNVLSMSLGG 283
S I+ IE AI +N++V++MSLGG
Sbjct: 102 GQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GT M+ PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 26/92 (28%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D++ HGTH A T A V ASL+ KV
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPSASLY-----------------AVKVL 96
Query: 253 WVGGCFS-SDILAAIEQAIDDNVNVLSMSLGG 283
G S I+ IE AI +N++V++MSLGG
Sbjct: 97 GADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL D++APGV+I + G ++ +GTSM+ P
Sbjct: 187 ASFSSAGS-----EL---DVMAPGVSIQSTLPGG-------------TYGAYNGTSMATP 225
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP W+ A +R L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D HGTH A T A V ASL+ +
Sbjct: 54 ETNPYQDGSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSG--------QYS 105
Query: 253 WVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAG 312
W I+ IE AI +N++V++MSLGG T +V A+ GI+V+ +AG
Sbjct: 106 W--------IINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAG 154
Query: 313 NAGPSSYSLSNV---APWITTVGAGTLD 337
N G SS S S V A + +T+ G ++
Sbjct: 155 NEG-SSGSTSTVGYPAKYPSTIAVGAVN 181
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V+ S A+FSS GP EL D++APGV+I + G ++ ++N
Sbjct: 180 VDSSNQRASFSSVGP-----EL---DVMAPGVSIQSTLPG----------NKYGAYN--- 218
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
GTS + PHV+G AAL+ + HP W+ +RS+L T
Sbjct: 219 GTSXASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL D++APGV+I + G ++ +GT M+ P
Sbjct: 187 ASFSSVGS-----EL---DVMAPGVSIQSTLPGG-------------TYGAYNGTXMATP 225
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP W+ A +R L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 33/160 (20%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D HGTH A T A V ASL+ +
Sbjct: 54 ETNPYQDGSSHGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSG--------QYS 105
Query: 253 WVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAG 312
W I+ IE AI +N++V++MSLGG T +V A+ GI+V+ +AG
Sbjct: 106 W--------IINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAG 154
Query: 313 NAGPSSYSLSNVA-----PWITTVGAGTLDRDFPAFVSLG 347
N G SS S S V P VGA +F S+G
Sbjct: 155 NEG-SSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVG 193
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL D++APGV+I + G ++ +GT M+ P
Sbjct: 187 ASFSSAGS-----EL---DVMAPGVSIQSTLPGG-------------TYGAYNGTCMATP 225
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP W+ A +R L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 201 ESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYKVC 252
E+ +D HGTH A T A V ASL+ +
Sbjct: 54 ETNPYQDGSSHGTHVAGTIAALNNSIGVLGVSPSASLYAVKVLDSTGSG--------QYS 105
Query: 253 WVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAG 312
W I+ IE AI +N++V++MSLGG T +V A+ GI+V+ +AG
Sbjct: 106 W--------IINGIEWAISNNMDVINMSLGGPTGSTALKTV---VDKAVSSGIVVAAAAG 154
Query: 313 NAGPSSYSLSNV---APWITTVGAGTLD 337
N G SS S S V A + +T+ G ++
Sbjct: 155 NEG-SSGSTSTVGYPAKYPSTIAVGAVN 181
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APG +I + W + + N ISGTSM+ PHV+G+AAL +P SP
Sbjct: 198 DIYAPGSSITSSWY-----------TSNSATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 564 AAIRSALMTTAYVSYKNGQKLQDIATG 590
A + + L T A K+ D TG
Sbjct: 247 AQVTNLLKTRATA-----DKVTDAKTG 268
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 485 VAAFSSRGPNSITPELL----KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
VA +SSRG S + + ++ APG ++ + W +N ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 541 SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
SM+ PHVSGLAA + A +P S +RS L A
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 202 SKSPRDDDGHGTHTASTA-AGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGC-FS 259
+ S D +GHGTH A TA A + A ++G YKV G +S
Sbjct: 62 NNSCTDRNGHGTHVAGTALADGGSDQAGIYG--------VAPDADLWAYKVLLDSGSGYS 113
Query: 260 SDILAAIEQAIDDNV-----NVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNA 314
DI AAI A D ++SMSLG ++ S A++ KG+L+ +AGN+
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNYAYS---KGVLIVAAAGNS 170
Query: 315 GPS 317
G S
Sbjct: 171 GYS 173
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 485 VAAFSSRGPNSITPELL----KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
VA +SSRG S + + ++ APG ++ + W +N ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 541 SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
M+ PHVSGLAA + A +P S +RS L A
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 202 SKSPRDDDGHGTHTASTA-AGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGC-FS 259
+ S D +GHGTH A TA A + A ++G YKV G +S
Sbjct: 62 NNSCTDRNGHGTHVAGTALADGGSDQAGIYG--------VAPDADLWAYKVLLDSGSGYS 113
Query: 260 SDILAAIEQAIDDNV-----NVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNA 314
DI AAI A D ++SMSLG ++ S A++ KG+L+ +AGN+
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNYAYS---KGVLIVAAAGNS 170
Query: 315 GPS 317
G S
Sbjct: 171 GYS 173
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 494 NSITPELLKP-------DMIAPGVNI-----LAGWSGAVGPTGLATDSRRVSFNIISGTS 541
NS P L P D+ P V++ LA +G + ++ + +GTS
Sbjct: 311 NSALPGLQNPFLVDANSDITVPSVSVDRATGLA-LKAKLGQSTTVSNQGNQDYEYYNGTS 369
Query: 542 MSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
M+ PHVSG+A L+ + HPE S + +R+AL TA
Sbjct: 370 MATPHVSGVATLVWSYHPECSASQVRAALNATA 402
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 205 PRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSSDILA 264
P +++ HGTH A T A ++ + G G +SS ++A
Sbjct: 59 PGNNNAHGTHVAGTIA-AIANNEGVVGVMPNQNANIHIVKVFNE-----AGWGYSSSLVA 112
Query: 265 AIEQAIDDN-VNVLSMSLGG-GTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLS 322
AI+ ++ NV++MSLGG G++ ++++ G+L+ +AGNAG SSYS
Sbjct: 113 AIDTCVNSGGANVVTMSLGGSGSTTTERNALNT----HYNNGVLLIAAAGNAGDSSYSYP 168
Query: 323 NVAPWITTVGAGTLDRDFPAF 343
+ +V A + D AF
Sbjct: 169 ASYDSVMSVAAVDSNLDHAAF 189
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APG +I + W +D+ + N GTSM+ PHV+G+AAL +P +P
Sbjct: 196 DLFAPGASIPSAW--------YTSDTATQTLN---GTSMATPHVAGVAALYLEQNPSATP 244
Query: 564 AAIRSALMTTA 574
A++ SA++ A
Sbjct: 245 ASVASAILNGA 255
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APG + + + PT ++ ++GTSM+ P
Sbjct: 186 ASFSSVGA-----EL---EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP S + +R+ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APG + + + PT ++ ++GTSM+ P
Sbjct: 186 ASFSSVGA-----EL---EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP S + +R+ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APG + + + PT ++ ++GTSM+ P
Sbjct: 186 ASFSSVGA-----EL---EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 224
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP S + +R+ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APG + + + PT ++ ++GTSM+ P
Sbjct: 187 ASFSSVGA-----EL---EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 225
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP S + +R+ L +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APG + + + PT ++ ++GTSM+ P
Sbjct: 187 ASFSSVGA-----EL---EVMAPGAGVYSTY-----PTN--------TYATLNGTSMASP 225
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP S + +R+ L +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 533 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
++ ++GTSM+ PHV+G AAL+ + HP S + +R+ L +TA
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 485 VAAFSSRGPNSITPE--LLKPD--MIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
VA FSSRG + + K D + APG + + W G AT ISGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWF----DGGYAT---------ISGT 248
Query: 541 SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVS 577
SM+ PH +GLAA + A P S +R L T A V+
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVN 285
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 144/382 (37%), Gaps = 52/382 (13%)
Query: 250 KVCWVGGC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK--DSVAIGAFAAMEKGI 305
+V V G ++ + AI A++ V++MS G Y D A KG+
Sbjct: 132 RVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGV 191
Query: 306 LVSCSAGN----AGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGD 361
+ SAGN G + L++ P VG S + + + K D
Sbjct: 192 SIVTSAGNDSSFGGKTRLPLAD-HPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTD 250
Query: 362 GLPGKLLPFVYAGN-----ASNATNGNLCMMDTLIPEKVAGKIVMCDRG-VNARXXXXXX 415
K +P + A + N M + + V GKI + +RG ++ +
Sbjct: 251 DHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKD-VKGKIALIERGDIDFKDKIANA 309
Query: 416 XXXXXXXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGT 475
N + + + +PA + +K G +K + K T+T
Sbjct: 310 KKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NSKKTITFNATPK 365
Query: 476 KVGVEPSPVVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSF 534
+ ++ FSS G +T + +KPD+ APG +IL+ + +
Sbjct: 366 VLPTASDTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN-------------KY 409
Query: 535 NIISGTSMSCPHVSGLAALLK----AAHPEWSPAA----IRSALMTTAYVSYKNGQKLQD 586
+SGTSMS P V+G+ LL+ +P+ +P+ + LM++A Y +K
Sbjct: 410 AKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY- 468
Query: 587 IATGKASTPFDHGAGHVNPVSA 608
+P GAG V+ A
Sbjct: 469 ------FSPRQQGAGAVDAKKA 484
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APG + + + PT ++ ++GT M+ P
Sbjct: 186 ASFSSVGA-----EL---EVMAPGAGVYSTY-----PTN--------TYATLNGTXMASP 224
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + HP S + +R+ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSG--AVGPTGLATD---SRRVSFNIISG 539
VA FSSR + APGV IL+ G ++G G + + +++ G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 540 TSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNG 581
TSM+ PHV+G+ A+L P P IR L TA+ NG
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG 421
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 15/71 (21%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D++APGV+I++ +G R ++ +SGTSM+ PHV+GLAALL A +
Sbjct: 202 DVVAPGVDIVSTITG-----------NRYAY--MSGTSMASPHVAGLAALL--ASQGRNN 246
Query: 564 AAIRSALMTTA 574
IR A+ TA
Sbjct: 247 IEIRQAIEQTA 257
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 67/192 (34%), Gaps = 45/192 (23%)
Query: 165 ETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVV 224
+TG ++ + + K+I +GY+ D P D + HGTH A AA
Sbjct: 39 DTGVDYTHPDLDGKVI------KGYDFVDNDYD-------PMDLNNHGTHVAGIAAAETN 85
Query: 225 EGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGG 284
+ G G SDI AI A D V+++SLG
Sbjct: 86 NATGIAGMAPNTRILAVRALDRN-------GSGTLSDIADAIIYAADSGAEVINLSLG-- 136
Query: 285 TSDYYKDSVAIGAFAAMEKGILVSCSAGNAG------PSSY----------------SLS 322
D + ++ A KG +V +AGN G P+SY S S
Sbjct: 137 -CDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFS 195
Query: 323 NVAPWITTVGAG 334
N W+ V G
Sbjct: 196 NYGTWVDVVAPG 207
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FSS G EL +++APGV++ + + P+ ++ ++GTSM+ P
Sbjct: 186 ASFSSVGS-----EL---EVMAPGVSVYSTY-----PSN--------TYTSLNGTSMASP 224
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G AAL+ + +P S + +R+ L +TA
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA 253
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 46/193 (23%)
Query: 168 TNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAG------ 221
T +S+ + K++G F G ES + D +GHGTH A T A
Sbjct: 33 TGIASSHTDLKVVGGASFVSG---------ESYNT----DGNGHGTHVAGTVAALDNTTG 79
Query: 222 --SVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS-SDILAAIEQAIDDNVNVLS 278
V SL+ KV G S S I++ IE A + ++V++
Sbjct: 80 VLGVAPNVSLY-----------------AIKVLNSSGSGSYSAIVSGIEWATQNGLDVIN 122
Query: 279 MSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGP--SSYSLSNVAPWITTVGAGTL 336
MSLGG + A+A+ GI+V +AGN+G S ++ A + + + G +
Sbjct: 123 MSLGGPSGSTALKQAVDKAYAS---GIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAV 179
Query: 337 D--RDFPAFVSLG 347
D ++ +F S+G
Sbjct: 180 DSNKNRASFSSVG 192
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALL 554
D+ APG NIL+ W G + N ISGTSM+ PH+ GL A L
Sbjct: 203 DIFAPGSNILSTWIGG-------------TTNTISGTSMATPHIVGLGAYL 240
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
VA FSSRGP +KPD++APG IL+ S ++ P + + + GTSM+
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 545 PHVSGLAALLK 555
P V+G A L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 250 PHVSGVVALIQAAY 263
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 260 SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYYKDSVAIGAFA 299
SDI IEQAI DD V+SMSLGG D Y + I A+
Sbjct: 116 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYN 175
Query: 300 AMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
A GI++ ++GN G S S P + VGA
Sbjct: 176 A---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 247
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 260 SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYYKDSVAIGAFA 299
SDI IEQAI DD V+SMSLGG D Y + I A+
Sbjct: 114 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYN 173
Query: 300 AMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
A GI++ ++GN G S S P + VGA
Sbjct: 174 A---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 49/164 (29%)
Query: 199 SKESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYK 250
S + + D +GHGTH T A V G ++ +
Sbjct: 141 STKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIY-----------------SVR 183
Query: 251 VCWVGGCFS-SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYY 289
V G S SDI IEQAI DD V+SMSLGG D Y
Sbjct: 184 VLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSY 243
Query: 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
+ I A+ A GI++ ++GN G S S P + VGA
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 49/164 (29%)
Query: 199 SKESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYK 250
S + + D +GHGTH T A V G ++ +
Sbjct: 141 STKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIY-----------------SVR 183
Query: 251 VCWVGGCFS-SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYY 289
V G S SDI IEQAI DD V+SMSLGG D Y
Sbjct: 184 VLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSY 243
Query: 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
+ I A+ A GI++ ++GN G S S P + VGA
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 60/164 (36%), Gaps = 49/164 (29%)
Query: 199 SKESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYK 250
S + + D +GHGTH T A V G ++ +
Sbjct: 141 STKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIY-----------------SVR 183
Query: 251 VCWVGGCFS-SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYY 289
V G S SDI IEQAI D V+SMSLGG D Y
Sbjct: 184 VLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDADAAEVISMSLGGPADDSY 243
Query: 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
+ I A+ A GI++ ++GN G S S P + VGA
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 327
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 60/164 (36%), Gaps = 49/164 (29%)
Query: 199 SKESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYK 250
S + + D +GHGTH T A V G ++ +
Sbjct: 141 STKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIY-----------------SVR 183
Query: 251 VCWVGGCFS-SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYY 289
V G S SDI IEQAI D V+SMSLGG D Y
Sbjct: 184 VLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGGPADDSY 243
Query: 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
+ I A+ A GI++ ++GN G S S P + VGA
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 325 PHVSGVVALIQAAY 338
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 49/164 (29%)
Query: 199 SKESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYK 250
S + + D +GHGTH T A V G ++ +
Sbjct: 138 STKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIY-----------------SVR 180
Query: 251 VCWVGGCFS-SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYY 289
V G S SDI IEQAI DD V+SMSLGG D Y
Sbjct: 181 VLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSY 240
Query: 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
+ I A+ A GI++ ++GN G S S P + VGA
Sbjct: 241 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 485 VAAFSSRGPN-SITPELLKPDMIAPGVNILAGW-SGAVGPTGLATDSRRVSFNIISGTSM 542
V A +SRG S + + D+ APG +IL+ SG P A ++ ++GTSM
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDA-------YSFMAGTSM 277
Query: 543 SCPHVSGLAALLKAA----HPEWSPAAIRSALMTT 573
+ PHVSG+AAL+ +A + +PA ++ L++T
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 564 AAIR 567
+A R
Sbjct: 247 SACR 250
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 31/141 (21%)
Query: 204 SPRDDDGHGTHTASTAAG---SVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSS 260
S RD +GHGTH A T V + LFG G S
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDN----------------GSGQYS 105
Query: 261 DILAAIEQAIDDNVN-------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGN 313
I+A ++ D N V S+SLGGG Y SV A G++V+ +AGN
Sbjct: 106 TIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGN 161
Query: 314 AGPSSYSLSNVA-PWITTVGA 333
+ + S + P + TVGA
Sbjct: 162 NNADARNYSPASEPSVCTVGA 182
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 17/97 (17%)
Query: 485 VAAFSSRGPN-SITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRR---VSFNIISGT 540
V A +SRG S + + D+ APG +IL + + + +RR +++ ++GT
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDIL---------STVDSGTRRPVSDAYSFMAGT 275
Query: 541 SMSCPHVSGLAALLKAA----HPEWSPAAIRSALMTT 573
SM+ PHVSG+AAL+ +A + +PA ++ L++T
Sbjct: 276 SMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 258
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 260 SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYYKDSVAIGAFA 299
SDI IEQAI DD V+SMSLGG D Y + I A+
Sbjct: 125 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYN 184
Query: 300 AMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
A GI++ ++GN G S S P + VGA
Sbjct: 185 A---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 505 MIAPGVNILAGWS-GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA 557
+ APG NIL+ G GP R S+ + +GTSM+ PHVSG+AAL+ +A
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 485 VAAFSSRGPN-SITPELLKPDMIAPGVNILAGW-SGAVGPTGLATDSRRVSFNIISGTSM 542
V A +SRG S + + D+ APG +IL+ SG P A ++ ++GTSM
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDA-------YSFMAGTSM 277
Query: 543 SCPHVSGLAALLKAA----HPEWSPAAIRSALMTT 573
+ PHVSG+AAL+ +A + +PA ++ L++T
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMAT 258
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 259 PHVSGVVALIQAAY 272
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 271 DDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITT 330
DD V+SMSLGG D Y + I A+ A GI++ ++GN G S S P +
Sbjct: 156 DDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIA 212
Query: 331 VGA 333
VGA
Sbjct: 213 VGA 215
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTXMAT 247
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 61/164 (37%), Gaps = 49/164 (29%)
Query: 199 SKESKSPRDDDGHGTHTASTAAG--------SVVEGASLFGYXXXXXXXXXXXXXXXXYK 250
S + + D +GHGTH T A V G ++ +
Sbjct: 61 STKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIY-----------------SVR 103
Query: 251 VCWVGGCFS-SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYY 289
V G S SDI IEQAI DD V+SMSLGG D Y
Sbjct: 104 VLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSY 163
Query: 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
+ I A+ A GI++ ++GN G S S P + VGA
Sbjct: 164 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Query: 505 MIAPGVNILAGWS-GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA 557
+ APG NIL+ G GP R S+ + +GTSM+ PHVSG+AAL+ +A
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R +P++ APGV+IL+ + S+ + GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTCMAT 247
Query: 545 PHVSGLAALLKAAH 558
PHVSG+ AL++AA+
Sbjct: 248 PHVSGVVALIQAAY 261
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 260 SDILAAIEQAI--------------------DDNVNVLSMSLGGGTSDYYKDSVAIGAFA 299
SDI IEQAI DD V+SMSLGG D Y + I A+
Sbjct: 114 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYN 173
Query: 300 AMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
A GI++ ++GN G S S P + VGA
Sbjct: 174 A---GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTSILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 564 AAIR 567
+A R
Sbjct: 247 SACR 250
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 56/141 (39%), Gaps = 31/141 (21%)
Query: 204 SPRDDDGHGTHTASTAAG---SVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSS 260
S RD +GHGTH A T V + LFG G S
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDN----------------GSGQYS 105
Query: 261 DILAAIEQAIDDNVN-------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGN 313
I+A ++ D N V S+SLGGG Y SV A G++V+ +AGN
Sbjct: 106 TIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGN 161
Query: 314 AGPSSYSLSNVA-PWITTVGA 333
+ + S + P + TVGA
Sbjct: 162 NNADARNYSPASEPSVCTVGA 182
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ PG +IL+ W G S ISGTSM+ PHV+GLAA L +
Sbjct: 200 DIFGPGTSILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 564 AAIR 567
+A R
Sbjct: 247 SACR 250
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 31/141 (21%)
Query: 204 SPRDDDGHGTHTASTAAG---SVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSS 260
S RD +GHGTH A T VV+ LFG G S
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTYGVVKKTQLFGVKVLDDN----------------GSGQYS 105
Query: 261 DILAAIEQAIDDNVN-------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGN 313
I+A ++ D N V S+SLGGG Y SV A G++V+ +AGN
Sbjct: 106 TIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGN 161
Query: 314 AGPSSYSLSNVA-PWITTVGA 333
+ + S + P + TVGA
Sbjct: 162 NNADARNYSPASEPSVCTVGA 182
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALL 554
D+ APG +I + W G G T N ISGTSM+ PH++GLAA L
Sbjct: 201 DIFAPGTSITSTWIG--GRT-----------NTISGTSMATPHIAGLAAYL 238
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 33/144 (22%)
Query: 202 SKSPRDDDGHGTHTASTAAGS---VVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCF 258
+ + RD GHGTH A T V + S+FG KV G
Sbjct: 61 ASTARDGHGHGTHCAGTIGSKTWGVAKKVSIFG-----------------VKVLDDSGSG 103
Query: 259 S-SDILAAIEQAIDDNVN-------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCS 310
S S+I+A ++ D + V SMSLGGG Y ++ A G+ V+ +
Sbjct: 104 SLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVA 159
Query: 311 AGNAGPSSYSLSNVA-PWITTVGA 333
AGN + + S + P + TVGA
Sbjct: 160 AGNDNRDAANTSPASEPTVCTVGA 183
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
VA FSSRGP +KPD++APG IL+ S ++ P + + GTS +
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 545 PHVSGLAALLK 555
P V+G A L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APG I + W + ISGTSM+ PHV+G+AAL + +P
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 564 AAIRSALMTTA 574
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
>pdb|2ZJ9|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D))
From An Escherichia Coli With A Tripeptide Deletion
(Gly286 Ser287 Asp288) On The H10 Helix
pdb|2ZJ9|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D))
From An Escherichia Coli With A Tripeptide Deletion
(Gly286 Ser287 Asp288) On The H10 Helix
Length = 355
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYT---VT 728
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMKTRVFQPLKLN 182
Query: 729 FTVSSMPSNTNSFAHLEWSDGKYIVGSPIAI 759
T ++PS + +GK + SP A+
Sbjct: 183 HTWINVPSAEEKNYAWGYREGKAVHVSPRAL 213
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 501 LKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE 560
+KPD+ APG +IL+ + + +SGTS S P V+G+ LL+ +
Sbjct: 380 IKPDIAAPGQDILSSVANN-------------KYAKLSGTSXSAPLVAGIXGLLQKQYET 426
Query: 561 WSPAAIRSALMTTA-YVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSA 608
P S + A V + L D +P GAG V+ A
Sbjct: 427 QYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 535 NIISGTSMSCPHVSGLAAL----LKAAHPEWSPAAIRSALMTTA 574
+ +GTS + PHV+G AL LK + E+SP +I+ A+ TA
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA 499
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 537 ISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
+SGTSM+ PHV+G+A LL A S + IR+A+ TA
Sbjct: 221 LSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 537 ISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
+SGTSM+ PHV+G+A LL A S + IR+A+ TA
Sbjct: 221 LSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA 256
>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
pdb|1L0D|B Chain B, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
Length = 358
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3IXG|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
pdb|3IXG|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i
Mutant Beta-Lactamase With And Without
Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom
Resolution
Length = 358
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|1KVL|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1KVL|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
In Complex With Substrate And Product Forms Of
Cephalothin
pdb|1L0G|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
pdb|1L0G|B Chain B, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase
Length = 358
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3IWO|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IWO|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution
pdb|3IXH|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
pdb|3IXH|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Y221g Mutant Beta-Lactamase In Complex With Cefotaxime
At 2.3 Angstrom Resolution
Length = 358
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3FKV|A Chain A, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKV|B Chain B, Ampc K67r Mutant Complexed With
Benzo(B)thiophene-2-Boronic Acid (Bzb)
pdb|3FKW|A Chain A, Ampc K67r Mutant Apo Structure
pdb|3FKW|B Chain B, Ampc K67r Mutant Apo Structure
Length = 358
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3IWI|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
pdb|3IWI|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At
1.64 Angstrom Resolution
Length = 361
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
pdb|1L0E|B Chain B, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase
Length = 358
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|2BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli
pdb|2BLS|B Chain B, Ampc Beta-Lactamase From Escherichia Coli
pdb|3BLS|A Chain A, Ampc Beta-lactamase From Escherichia Coli
pdb|3BLS|B Chain B, Ampc Beta-lactamase From Escherichia Coli
pdb|1C3B|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1C3B|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor,
Benzo(B) Thiophene-2-Boronic Acid (Bzb)
pdb|1FCO|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1FCO|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Covalently Acylated With The Inhibitory Beta-Lactam,
Moxalactam
pdb|1IEL|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEL|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Ceftazidime
pdb|1IEM|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1IEM|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With A Boronic Acid Inhibitor (1, Cefb4)
pdb|1GA9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1GA9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli
Complexed With Non-Beta-Lactamase Inhibitor (2, 3-(4-
Benzenesulfonyl-Thiophene-2-Sulfonylamino)-Phenylboronic
Acid)
pdb|1KVM|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KVM|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Cephalothin
pdb|1KDS|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDS|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 3-Nitrophenylboronic
Acid
pdb|1KDW|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KDW|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor
4-Carboxyphenylboronic Acid
pdb|1KE0|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE0|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With The Inhibitor 4-(Carboxyvin-2-Yl)
Phenylboronic Acid
pdb|1KE3|A Chain A, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE3|B Chain B, X-ray Crystal Structure Of Ampc Beta-lactamase From E.
Coli In Complex With The Inhibitor
4,4'-biphenyldiboronic Acid
pdb|1KE4|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1KE4|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli
pdb|1L2S|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1L2S|B Chain B, X-Ray Crystal Structure Of Ampc Beta-Lactamase From E.
Coli In Complex With A Dock-Predicted Non-Covalent
Inhibitor
pdb|1LL9|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LL9|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Amoxicillin
pdb|1LLB|A Chain A, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LLB|B Chain B, Crystal Structure Of Ampc Beta-Lactamase From E. Coli In
Complex With Atmo-Penicillin
pdb|1LL5|A Chain A, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1LL5|B Chain B, X-Ray Crystal Structure Of Ampc Wt Beta-Lactamase In
Complex With Covalently Bound Imipenem
pdb|1MXO|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MXO|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|A Chain A, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1MY8|B Chain B, Ampc Beta-Lactamase In Complex With An
M.Carboxyphenylglycylboronic Acid Bearing The
Cephalothin R1 Side Chain
pdb|1XGI|A Chain A, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGI|B Chain B, Ampc Beta-Lactamase In Complex With 3-(3-Nitro-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|A Chain A, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|1XGJ|B Chain B, Ampc Beta-Lactamase In Complex With
3-(4-Carboxy-2-Hydroxy-
Phenylsulfamoyl)-Thiophene-2-Carboxylic Acid
pdb|2HDQ|A Chain A, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDQ|B Chain B, Ampc Beta-Lactamase In Complex With 2-Carboxythiophene
pdb|2HDR|A Chain A, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDR|B Chain B, Ampc Beta-Lactamase In Complex With 4-Amino-3-
Hydroxybenzoic Acid
pdb|2HDS|A Chain A, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDS|B Chain B, Ampc Beta-Lactamase In Complex With 4-Methanesulfonylamino
Benzoic Acid
pdb|2HDU|A Chain A, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2HDU|B Chain B, Ampc Beta-Lactamase In Complex With
2-Acetamidothiophene-3- Carboxylic Acid
pdb|2P9V|B Chain B, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
pdb|2I72|A Chain A, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2I72|B Chain B, Ampc Beta-Lactamase In Complex With 5-Diformylaminomethyl-
Benzo[b]thiophen-2-Boronic Acid
pdb|2RCX|A Chain A, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2RCX|B Chain B, Ampc Beta-Lactamase In Complex With
(1r)-1-(2-Thiophen-2-Yl-
Acetylamino)-1-(3-(2-Carboxyvinyl)-Phenyl) Methylboronic
Acid
pdb|2PU2|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU2|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2PU4|A Chain A, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2PU4|B Chain B, Ampc Beta-Lacamase With Bound Covalent Oxadiazole
Inhibitor
pdb|2R9W|A Chain A, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9W|B Chain B, Ampc Beta-lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|A Chain A, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|2R9X|B Chain B, Ampc Beta-Lactamase With Bound Phthalamide Inhibitor
pdb|3BM6|A Chain A, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3BM6|B Chain B, Ampc Beta-Lactamase In Complex With A
P.Carboxyphenylboronic
pdb|3GQZ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GQZ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GR2|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GRJ|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GSG|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GTC|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GV9|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|A Chain A, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3GVB|B Chain B, Ampc Beta-Lactamase In Complex With Fragment-Based
Inhibitor
pdb|3O86|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O86|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O87|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|3O88|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Sulfonamide Boronic Acid Inhibitor
pdb|4E3I|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3I|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 3- Carboxyl Benzyl Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3J|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3K|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Designed 4- Tetrazolyl Pyridine Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3L|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
3-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3M|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2-Chloro-4- Tetrazolyl Benzene Sulfonamide Boronic Acid
Inhibitor
pdb|4E3N|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3N|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
2- Trifluoromethyl-4-Tetrazolyl Benzene Sulfonamide
Boronic Acid Inhibitor
pdb|4E3O|A Chain A, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
pdb|4E3O|B Chain B, Crystal Structure Of Ampc Beta-Lactamase In Complex With A
Small Chloromethyl Sulfonamide Boronic Acid Inhibitor
Length = 358
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3IXD|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution
pdb|3IXD|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution
Length = 358
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|2P9V|A Chain A, Structure Of Ampc Beta-Lactamase With Cross-Linked Active
Site After Exposure To Small Molecule Inhibitor
Length = 358
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|1PI4|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A
Phenylglyclboronic Acid Bearing The Cephalothin R1 Side
Chain
pdb|1PI4|B Chain B, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A
Phenylglyclboronic Acid Bearing The Cephalothin R1 Side
Chain
pdb|1PI5|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm2,
Carboxyphenylglycylboronic Acid Bearing The Cephalothin
R1 Side Chain
pdb|1PI5|B Chain B, Structure Of N289a Mutant Of Ampc In Complex With Sm2,
Carboxyphenylglycylboronic Acid Bearing The Cephalothin
R1 Side Chain
pdb|2FFY|A Chain A, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic
Acid Deacylation Transition State Analog Compound Sm3
Length = 358
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|1FSW|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSW|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cephalothinboronic Acid
pdb|1FSY|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
pdb|1FSY|B Chain B, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor
Cloxacillinboronic Acid
Length = 358
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|2FFY|B Chain B, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic
Acid Deacylation Transition State Analog Compound Sm3
Length = 358
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3IWQ|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IWQ|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution
pdb|3IXB|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
pdb|3IXB|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc
E219k Mutant Beta-Lactamase Complexed With
Benzo(B)thiophene-2- Boronic Acid (Bzb) At 1.63 Angstrom
Resolution
Length = 358
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|1I5Q|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
pdb|1I5Q|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant N152a Covalently Acylated With The Inhibitory
Beta-Lactam, Moxalactam
Length = 358
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYAASSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
Length = 351
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 108 TRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETG 167
T PE G+ S + P G+ + + G+ G W E + D + W+G C
Sbjct: 216 THDPE-RGIYNSPYIIP--GTQTVTLGGIFQLGNWSELNNIQDHN-----TIWEGCCRLE 267
Query: 168 TNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDD-----GHGTHTASTAAGS 222
N ++IG R R + ++ + P + + GHG + + G
Sbjct: 268 PTLK----NARIIGERTGFRPVRPQIR-LEREQLRTGPSNTEVIHNYGHGGYGLTIHWGC 322
Query: 223 VVEGASLFG 231
+E A LFG
Sbjct: 323 ALEAAKLFG 331
>pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
pdb|1L0F|B Chain B, X-Ray Crystal Structure Of Ampc N152h Mutant
Beta-Lactamase
Length = 358
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT +++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLYAHSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|G Chain G, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|J Chain J, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2E48|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E49|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E4A|A Chain A, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|B Chain B, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|C Chain C, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|D Chain D, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E82|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|3CUK|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
Length = 347
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 108 TRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETG 167
T PE G+ S + P G+ + + G+ G W E + D + W+G C
Sbjct: 216 THDPE-RGIYNSPYIIP--GTQTVTLGGIFQLGNWSELNNIQDHN-----TIWEGCCRLE 267
Query: 168 TNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDD-----GHGTHTASTAAGS 222
N ++IG R R + ++ + P + + GHG + + G
Sbjct: 268 PTLK----NARIIGERTGFRPVRPQIR-LEREQLRTGPSNTEVIHNYGHGGYGLTIHWGC 322
Query: 223 VVEGASLFG 231
+E A LFG
Sbjct: 323 ALEAAKLFG 331
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
+++GTS + P SG ALL +A+P+ S +R L +A
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSA 369
>pdb|1FCM|A Chain A, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCM|B Chain B, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant
Q120lY150E Covalently Acylated With The Inhibitory
Beta-Lactam, Cloxacillin
pdb|1FCN|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1FCN|B Chain B, Crystal Structure Of The E. Coli Ampc Beta-Lactamase
Mutant Q120lY150E COVALENTLY ACYLATED WITH THE SUBSTRATE
BETA-Lactam Loracarbef
pdb|1O07|A Chain A, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
pdb|1O07|B Chain B, Crystal Structure Of The Complex Between Q120lY150E MUTANT
OF AMPC And A Beta-Lactam Inhibitor (Mxg)
Length = 358
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 672 SSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY 725
S S +L++ ++ PGT ++ SS G ++V+P+ LSF QA + + +
Sbjct: 123 KSSSDLLRFYQNWQPAWAPGTQRLEANSSIGLFGALAVKPSGLSFEQAMQTRVF 176
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 261 DILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFA-AMEKGILVSCSAGNAGPSSY 319
D+ AIEQA+++ N++++S G T D+ A E +L+ + GN G
Sbjct: 106 DLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECL 165
Query: 320 SLSNVAPWITTVGA 333
+ P + VGA
Sbjct: 166 HVPASLPTVLAVGA 179
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
K ++APG IL P L +GTSM+ P ++G++ALL + +
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 562 ----SPAAIRSALMTTA 574
A+R+AL+ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
K ++APG IL P L +GTSM+ P ++G++ALL + +
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 312
Query: 562 ----SPAAIRSALMTTA 574
A+R+AL+ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALL 554
D++APGV I + + DS + +SGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTY----------LDS---GYAELSGTAMAAPHVAGALALI 263
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
K ++APG IL P L +GTSM+ P ++G++ALL + +
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAAPVMTGISALLMSLQVQQ 294
Query: 562 ----SPAAIRSALMTTA 574
A+R+AL+ TA
Sbjct: 295 GKPVDAEAVRTALLKTA 311
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALL 554
D++APGV I + + DS + +SGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTY----------LDS---GYAELSGTAMAAPHVAGALALI 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,624,850
Number of Sequences: 62578
Number of extensions: 946399
Number of successful extensions: 2139
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1796
Number of HSP's gapped (non-prelim): 261
length of query: 762
length of database: 14,973,337
effective HSP length: 106
effective length of query: 656
effective length of database: 8,340,069
effective search space: 5471085264
effective search space used: 5471085264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)