Query 004301
Match_columns 762
No_of_seqs 499 out of 3216
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 21:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.1E-53 4.5E-58 456.1 31.3 304 103-575 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.7E-50 5.9E-55 447.8 24.7 301 112-615 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 4.9E-49 1.1E-53 412.4 24.8 270 126-610 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 2E-48 4.4E-53 404.9 25.2 243 123-578 1-254 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 3.2E-48 7E-53 412.1 25.4 286 129-574 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 1.2E-47 2.5E-52 419.2 29.2 311 122-610 2-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 6.8E-48 1.5E-52 430.0 26.1 406 127-601 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1E-46 2.2E-51 405.4 27.9 294 120-613 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.5E-46 3.2E-51 392.6 26.1 246 122-579 2-254 (267)
10 cd07483 Peptidases_S8_Subtilis 100.0 9.1E-46 2E-50 392.8 25.5 269 130-575 1-291 (291)
11 cd07474 Peptidases_S8_subtilis 100.0 4.3E-45 9.4E-50 390.3 30.0 289 129-608 1-295 (295)
12 cd05561 Peptidases_S8_4 Peptid 100.0 7.4E-46 1.6E-50 382.2 23.1 234 132-601 1-239 (239)
13 cd07481 Peptidases_S8_Bacillop 100.0 1.6E-44 3.4E-49 379.1 25.7 247 129-575 1-264 (264)
14 KOG1153 Subtilisin-related pro 100.0 1.7E-45 3.8E-50 381.2 16.0 325 28-575 79-461 (501)
15 cd07493 Peptidases_S8_9 Peptid 100.0 3E-44 6.6E-49 376.4 24.9 243 131-575 1-261 (261)
16 cd04857 Peptidases_S8_Tripepti 100.0 8.2E-44 1.8E-48 384.9 28.0 220 206-577 182-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.4E-43 3E-48 373.8 25.9 262 122-573 2-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 3.7E-43 8E-48 369.3 27.1 256 129-575 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.5E-42 3.3E-47 362.4 25.9 232 122-576 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 2.4E-42 5.2E-47 362.1 25.8 241 119-577 18-259 (260)
21 cd07496 Peptidases_S8_13 Pepti 100.0 3.6E-42 7.8E-47 365.3 26.4 207 204-573 66-285 (285)
22 cd04847 Peptidases_S8_Subtilis 100.0 1.1E-42 2.5E-47 370.3 21.6 262 133-575 2-291 (291)
23 cd07490 Peptidases_S8_6 Peptid 100.0 5.5E-42 1.2E-46 358.3 25.8 253 131-575 1-254 (254)
24 cd07494 Peptidases_S8_10 Pepti 100.0 4.6E-42 9.9E-47 364.3 23.6 251 119-578 10-286 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.6E-41 3.4E-46 362.5 25.9 277 125-575 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 4.1E-41 8.8E-46 349.0 24.0 239 132-573 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 5.2E-41 1.1E-45 358.3 24.5 264 124-606 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 3.2E-41 7E-46 353.7 21.1 244 120-575 5-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 2E-40 4.2E-45 347.6 26.6 246 130-575 2-259 (259)
30 cd07482 Peptidases_S8_Lantibio 100.0 2.8E-40 6E-45 353.1 24.1 253 131-573 1-294 (294)
31 cd07477 Peptidases_S8_Subtilis 100.0 5.6E-40 1.2E-44 337.6 25.3 226 131-573 1-229 (229)
32 cd07491 Peptidases_S8_7 Peptid 100.0 2.2E-40 4.8E-45 341.9 21.4 156 129-335 2-170 (247)
33 PF00082 Peptidase_S8: Subtila 100.0 6.2E-41 1.3E-45 355.8 15.0 274 133-610 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 5.6E-39 1.2E-43 328.4 24.0 221 131-575 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 1.7E-39 3.6E-44 347.5 19.3 248 119-575 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 5.6E-38 1.2E-42 330.2 22.9 242 128-575 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 3.5E-36 7.6E-41 319.4 25.1 353 28-610 48-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.3E-32 2.9E-37 304.6 21.5 238 208-610 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1E-32 2.2E-37 283.8 17.0 194 205-573 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 8E-31 1.7E-35 270.4 25.3 195 205-573 40-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.8E-23 3.8E-28 239.5 23.2 272 120-610 130-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 3.4E-22 7.3E-27 202.7 11.0 170 120-333 151-335 (629)
43 cd04056 Peptidases_S53 Peptida 99.8 1.3E-17 2.8E-22 182.3 16.5 101 236-339 82-199 (361)
44 cd02120 PA_subtilisin_like PA_ 99.3 1.2E-11 2.5E-16 114.7 13.3 123 344-469 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.3 2.3E-11 5.1E-16 115.0 11.9 117 365-495 25-142 (143)
46 PF05922 Inhibitor_I9: Peptida 98.9 4.1E-09 8.9E-14 89.6 7.7 76 31-106 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.7 1.5E-07 3.3E-12 86.5 12.8 97 367-467 18-119 (122)
48 cd02127 PA_hPAP21_like PA_hPAP 98.7 7.6E-08 1.6E-12 87.3 10.3 89 382-471 21-117 (118)
49 cd02122 PA_GRAIL_like PA _GRAI 98.7 8.5E-08 1.8E-12 89.5 10.1 89 381-469 43-137 (138)
50 cd02129 PA_hSPPL_like PA_hSPPL 98.7 7.3E-08 1.6E-12 86.9 9.2 91 366-462 20-114 (120)
51 PF02225 PA: PA domain; Inter 98.7 5.3E-08 1.1E-12 86.2 7.0 79 382-460 19-101 (101)
52 cd04818 PA_subtilisin_1 PA_sub 98.6 1.8E-07 3.9E-12 85.5 10.0 87 381-468 26-116 (118)
53 KOG3525 Subtilisin-like propro 98.6 1.5E-07 3.3E-12 104.0 10.8 158 119-319 22-189 (431)
54 cd02126 PA_EDEM3_like PA_EDEM3 98.6 2E-07 4.3E-12 86.0 9.4 86 382-468 27-124 (126)
55 cd02124 PA_PoS1_like PA_PoS1_l 98.6 8.3E-07 1.8E-11 81.9 12.5 98 368-467 28-126 (129)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.5 3.6E-07 7.9E-12 83.9 9.5 85 383-468 32-120 (122)
57 cd02125 PA_VSR PA_VSR: Proteas 98.5 8.9E-07 1.9E-11 81.5 11.3 87 382-468 22-125 (127)
58 cd00538 PA PA: Protease-associ 98.5 4.5E-07 9.8E-12 83.7 9.4 86 382-467 30-123 (126)
59 cd02132 PA_GO-like PA_GO-like: 98.5 5.8E-07 1.3E-11 84.3 9.7 84 382-468 48-137 (139)
60 cd04817 PA_VapT_like PA_VapT_l 98.5 6E-07 1.3E-11 83.4 8.8 75 389-463 49-134 (139)
61 PF06280 DUF1034: Fn3-like dom 98.4 1.9E-06 4.2E-11 77.8 11.1 82 676-758 8-112 (112)
62 cd04813 PA_1 PA_1: Protease-as 98.4 9.1E-07 2E-11 80.1 8.9 80 381-462 26-111 (117)
63 COG4934 Predicted protease [Po 98.4 1.5E-06 3.2E-11 103.4 12.1 95 236-333 287-395 (1174)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.4 1.4E-06 3E-11 83.2 9.5 84 382-465 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 98.0 8.5E-05 1.8E-09 68.7 12.6 91 365-464 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.4 0.00052 1.1E-08 64.0 8.3 78 391-468 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.8 0.0038 8.2E-08 60.7 7.3 71 392-462 51-155 (183)
68 cd04814 PA_M28_1 PA_M28_1: Pro 96.6 0.0061 1.3E-07 56.9 6.9 63 366-431 20-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.5 0.0077 1.7E-07 55.9 6.8 63 366-431 22-96 (137)
70 KOG2442 Uncharacterized conser 96.3 0.012 2.6E-07 64.0 8.0 79 392-470 91-175 (541)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.3 0.011 2.4E-07 55.9 6.9 64 366-432 20-101 (151)
72 PF14874 PapD-like: Flagellar- 96.2 0.085 1.9E-06 46.5 12.1 81 676-761 20-101 (102)
73 KOG3920 Uncharacterized conser 95.4 0.019 4.1E-07 52.9 4.2 101 367-474 65-175 (193)
74 PF10633 NPCBM_assoc: NPCBM-as 95.2 0.085 1.8E-06 44.1 7.5 59 676-736 5-65 (78)
75 cd02131 PA_hNAALADL2_like PA_h 95.1 0.03 6.4E-07 52.4 4.5 38 393-430 37-74 (153)
76 cd02121 PA_GCPII_like PA_GCPII 94.3 0.083 1.8E-06 53.3 6.0 57 366-431 45-106 (220)
77 KOG4628 Predicted E3 ubiquitin 93.0 0.23 5E-06 53.1 6.8 81 383-463 63-150 (348)
78 PF11614 FixG_C: IG-like fold 92.9 1.7 3.8E-05 39.3 11.6 57 676-735 31-88 (118)
79 PF06030 DUF916: Bacterial pro 92.7 1.8 4E-05 39.4 11.4 72 676-748 27-120 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 89.2 1.7 3.6E-05 41.6 7.9 62 366-430 22-102 (157)
81 PF00345 PapD_N: Pili and flag 80.9 15 0.00032 33.3 9.8 69 677-747 15-89 (122)
82 PF07718 Coatamer_beta_C: Coat 79.9 19 0.0004 33.6 9.8 67 677-747 70-138 (140)
83 COG1470 Predicted membrane pro 79.4 8.6 0.00019 42.6 8.7 70 676-747 397-468 (513)
84 KOG1114 Tripeptidyl peptidase 79.3 1.3 2.9E-05 52.4 2.7 25 125-149 76-100 (1304)
85 PF07705 CARDB: CARDB; InterP 76.7 22 0.00048 30.4 9.3 51 676-732 19-72 (101)
86 COG1470 Predicted membrane pro 70.0 52 0.0011 36.7 11.7 59 676-736 284-348 (513)
87 PF00635 Motile_Sperm: MSP (Ma 68.6 23 0.0005 31.1 7.6 51 677-732 19-70 (109)
88 TIGR02745 ccoG_rdxA_fixG cytoc 63.6 28 0.0006 39.2 8.5 55 676-733 346-401 (434)
89 PLN03080 Probable beta-xylosid 59.8 34 0.00074 41.6 9.0 78 677-756 685-778 (779)
90 PF00927 Transglut_C: Transglu 58.1 72 0.0016 28.0 8.7 53 676-732 15-77 (107)
91 smart00635 BID_2 Bacterial Ig- 57.6 30 0.00066 28.8 5.8 41 706-751 4-44 (81)
92 COG4808 Uncharacterized protei 56.7 25 0.00055 32.1 5.3 32 64-95 94-125 (152)
93 PF14016 DUF4232: Protein of u 38.7 1.7E+02 0.0036 26.8 8.1 81 676-757 18-112 (131)
94 PF08821 CGGC: CGGC domain; I 38.1 1.7E+02 0.0038 26.0 7.7 44 238-283 31-75 (107)
95 COG3915 Uncharacterized protei 37.4 1.6E+02 0.0035 27.2 7.3 17 1-17 1-17 (155)
96 PF05753 TRAP_beta: Translocon 35.7 2.6E+02 0.0056 27.5 9.2 69 676-747 38-111 (181)
97 PF02845 CUE: CUE domain; Int 34.6 40 0.00088 24.2 2.6 25 551-575 5-29 (42)
98 PRK15098 beta-D-glucoside gluc 32.5 84 0.0018 38.3 6.4 54 676-732 667-728 (765)
99 PF07610 DUF1573: Protein of u 31.9 1.3E+02 0.0029 21.9 5.0 43 682-729 2-45 (45)
100 PF08260 Kinin: Insect kinin p 31.4 22 0.00047 16.2 0.4 6 487-492 3-8 (8)
101 TIGR01451 B_ant_repeat conserv 31.3 1.8E+02 0.004 22.0 5.9 38 676-716 12-50 (53)
102 PRK13791 lysozyme inhibitor; P 30.5 87 0.0019 28.2 4.5 23 1-23 1-23 (113)
103 PRK15019 CsdA-binding activato 29.8 49 0.0011 31.3 3.0 33 535-568 77-109 (147)
104 PF12690 BsuPI: Intracellular 29.6 1.1E+02 0.0023 25.8 4.7 20 713-733 53-72 (82)
105 TIGR03391 FeS_syn_CsdE cystein 28.2 55 0.0012 30.6 3.0 34 535-569 72-105 (138)
106 PRK09296 cysteine desufuration 25.3 66 0.0014 30.0 3.0 33 535-568 67-99 (138)
107 PF13940 Ldr_toxin: Toxin Ldr, 24.7 52 0.0011 22.4 1.5 13 542-554 14-26 (35)
108 PRK15188 fimbrial chaperone pr 24.2 5.4E+02 0.012 26.2 9.6 71 676-747 41-114 (228)
109 COG2166 sufE Cysteine desulfur 23.9 68 0.0015 30.1 2.7 32 536-568 73-104 (144)
110 PF02657 SufE: Fe-S metabolism 23.8 78 0.0017 29.0 3.1 33 536-569 59-91 (125)
111 PF04255 DUF433: Protein of un 23.4 68 0.0015 24.7 2.3 39 533-571 10-54 (56)
112 COG1570 XseA Exonuclease VII, 23.2 2.4E+02 0.0053 31.6 7.2 73 240-315 159-236 (440)
113 PF02601 Exonuc_VII_L: Exonucl 22.8 2.8E+02 0.0061 29.7 7.8 72 241-315 39-118 (319)
114 PF12276 DUF3617: Protein of u 22.3 87 0.0019 29.8 3.3 39 1-39 1-39 (162)
115 PRK11023 outer membrane lipopr 22.0 7.3E+02 0.016 24.4 9.9 53 86-138 96-153 (191)
116 smart00546 CUE Domain that may 21.6 1.3E+02 0.0029 21.5 3.4 25 550-574 5-29 (43)
117 PF04744 Monooxygenase_B: Mono 21.3 4.6E+02 0.01 28.6 8.5 53 676-731 263-335 (381)
118 PF02368 Big_2: Bacterial Ig-l 20.2 45 0.00098 27.5 0.7 37 706-748 4-40 (79)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-53 Score=456.13 Aligned_cols=304 Identities=60% Similarity=1.023 Sum_probs=261.0
Q ss_pred eccCCCCCCcccCCcCCCC--CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceee
Q 004301 103 YELHTTRSPEFLGLDKSAN--LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLI 180 (762)
Q Consensus 103 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kii 180 (762)
++++++++++++++..... +|..+++|+||+|||||||||++||+|.+++..+++..|.+.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678899999999987655 47889999999999999999999999999989999999999999998888788999999
Q ss_pred eeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecC-CCCH
Q 004301 181 GARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG-GCFS 259 (762)
Q Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~ 259 (762)
+.++|..++..... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999887654322 123444567889999999999999999877666666666778999999999999999884 4889
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCc
Q 004301 260 SDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRD 339 (762)
Q Consensus 260 ~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~ 339 (762)
+++++||++|+++|++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987645566788888889999999999999999988888888999999999730
Q ss_pred cceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHc
Q 004301 340 FPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAA 419 (762)
Q Consensus 340 ~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~ 419 (762)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCC
Q 004301 420 GGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499 (762)
Q Consensus 420 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 499 (762)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 500 LLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 500 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 467999999999999875311 111222358999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.7e-50 Score=447.83 Aligned_cols=301 Identities=19% Similarity=0.179 Sum_probs=213.4
Q ss_pred cccCCcC--CCCCCc--CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccc
Q 004301 112 EFLGLDK--SANLFP--TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFAR 187 (762)
Q Consensus 112 ~~~g~~~--~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~ 187 (762)
..|+++. ++.+|. .+.+|+||+|||||||||++||||.++-... +....|.. .+.. +++..+ +...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giDd--D~nG~v---dd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GIDD--DNNGNV---DDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----cccc--ccCCcc---cccc
Confidence 4567664 345665 4678999999999999999999998641000 00001100 0000 011110 0011
Q ss_pred cccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHH
Q 004301 188 GYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAI 266 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai 266 (762)
++++.+ ...+|.|.+||||||||||||...++. .+.||||+|+|+++|++++.| +..+++++||
T Consensus 364 G~nfVd-------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI 428 (639)
T PTZ00262 364 GANFVN-------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHKLGRLGDMFKCF 428 (639)
T ss_pred cccccC-------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCCCccHHHHHHHH
Confidence 222211 123578899999999999999854332 248999999999999998877 7889999999
Q ss_pred HHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC--------------ccC----CCCce
Q 004301 267 EQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS--------------LSN----VAPWI 328 (762)
Q Consensus 267 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~v 328 (762)
+||++.|++|||||||+.. +...+..++.+|.++|++||+||||+|..... ++. ..|++
T Consensus 429 ~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nV 505 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNV 505 (639)
T ss_pred HHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCE
Confidence 9999999999999999743 33466777889999999999999999865321 111 23566
Q ss_pred EEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCch
Q 004301 329 TTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNA 408 (762)
Q Consensus 329 itVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~ 408 (762)
|+|||.+.+..
T Consensus 506 IaVGAv~~d~~--------------------------------------------------------------------- 516 (639)
T PTZ00262 506 ITVSNLIKDKN--------------------------------------------------------------------- 516 (639)
T ss_pred EEEeeccCCCC---------------------------------------------------------------------
Confidence 66666422110
Q ss_pred hhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecc
Q 004301 409 RVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAF 488 (762)
Q Consensus 409 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 488 (762)
....++.|
T Consensus 517 ------------------------------------------------------------------------~~~s~s~~ 524 (639)
T PTZ00262 517 ------------------------------------------------------------------------NQYSLSPN 524 (639)
T ss_pred ------------------------------------------------------------------------Cccccccc
Confidence 00023456
Q ss_pred cCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004301 489 SSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRS 568 (762)
Q Consensus 489 Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 568 (762)
|++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|+++||++
T Consensus 525 Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~ 584 (639)
T PTZ00262 525 SFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIR 584 (639)
T ss_pred ccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 666632 349999999999998865 799999999999999999999999999999999999
Q ss_pred HHHhcccccccCCcccccccCCCCCCCCCCCC-CCcCccccCCCCeee
Q 004301 569 ALMTTAYVSYKNGQKLQDIATGKASTPFDHGA-GHVNPVSALNPGLVY 615 (762)
Q Consensus 569 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~-G~vd~~~A~~~~lv~ 615 (762)
+|++||.+++.. +..+|| |+||+++|++..+-+
T Consensus 585 iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 585 ILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 999999876321 113333 899999999866543
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=4.9e-49 Score=412.37 Aligned_cols=270 Identities=23% Similarity=0.217 Sum_probs=203.2
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCC
Q 004301 126 SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSP 205 (762)
Q Consensus 126 ~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
+++|+||+|||||||||.+||++.+.....++..+ .+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-------------cCCC
Confidence 57999999999999999999865432111111111 00000 1135
Q ss_pred CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 004301 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGT 285 (762)
Q Consensus 206 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 285 (762)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 67889999999999 389999999999874 35789999999999999999999999865
Q ss_pred CCC-cccHHHHHHHHHHhc-CCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCC
Q 004301 286 SDY-YKDSVAIGAFAAMEK-GILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDG 362 (762)
Q Consensus 286 ~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~ 362 (762)
.+. ....+..++.++.++ |++||+||||+|.... ..++..|++|+|||++.+.......
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------ 164 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------ 164 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------
Confidence 443 234577777888887 9999999999998643 4567899999999975433210000
Q ss_pred CCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcc
Q 004301 363 LPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHL 442 (762)
Q Consensus 363 ~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 442 (762)
|...
T Consensus 165 ----------------------~~~~------------------------------------------------------ 168 (275)
T cd05562 165 ----------------------DPAP------------------------------------------------------ 168 (275)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred cceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC-cEEecccCCCC
Q 004301 443 LPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV-NILAGWSGAVG 521 (762)
Q Consensus 443 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~ 521 (762)
.......+.||++||+.. +++||||+|||+ ++.+++..+
T Consensus 169 ------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~-- 208 (275)
T cd05562 169 ------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD-- 208 (275)
T ss_pred ------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC--
Confidence 000113456788999876 789999999975 445544432
Q ss_pred CCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCC
Q 004301 522 PTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601 (762)
Q Consensus 522 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 601 (762)
.|..++|||||||||||++|||+|++|+|+++|||++|++||+++. .++.+..||||
T Consensus 209 -----------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~G 265 (275)
T cd05562 209 -----------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGSG 265 (275)
T ss_pred -----------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCcC
Confidence 7999999999999999999999999999999999999999999873 23455699999
Q ss_pred CcCccccCC
Q 004301 602 HVNPVSALN 610 (762)
Q Consensus 602 ~vd~~~A~~ 610 (762)
+||+.+|++
T Consensus 266 ~vda~~Av~ 274 (275)
T cd05562 266 LVDADRAVA 274 (275)
T ss_pred cccHHHHhh
Confidence 999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=2e-48 Score=404.91 Aligned_cols=243 Identities=26% Similarity=0.352 Sum_probs=197.3
Q ss_pred CcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCC
Q 004301 123 FPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKES 202 (762)
Q Consensus 123 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 202 (762)
|..+++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 889999999999999999999999997410 0001110 1
Q ss_pred CCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEcc
Q 004301 203 KSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSL 281 (762)
Q Consensus 203 ~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 281 (762)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|+||++++++||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 1345778999999999999742 137999999999999998776 6677899999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeec
Q 004301 282 GGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYK 359 (762)
Q Consensus 282 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~ 359 (762)
|... ....++..++.++.++|++||+||||+|+... ..+...+++|+|||.+.
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 162 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------------- 162 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------------
Confidence 9753 23345666677888999999999999997543 34567788999997421
Q ss_pred CCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccccc
Q 004301 360 GDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVAD 439 (762)
Q Consensus 360 ~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 439 (762)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCC----CCCCCCCcEEecCCcEEec
Q 004301 440 AHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSI----TPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 440 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa 515 (762)
.+.++.|||+|++.. ..+++||||.|||.+|+++
T Consensus 163 ------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 163 ------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred ------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 125788999996531 1378899999999999987
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP----EWSPAAIRSALMTTAYVSY 578 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~~sp~~ik~~L~~TA~~~~ 578 (762)
.... .|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 201 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 6543 788999999999999999999999998 7999999999999999874
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-48 Score=412.14 Aligned_cols=286 Identities=31% Similarity=0.345 Sum_probs=190.6
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
|+||+|||||||||.+||+|.++... .|.-. |+ +..++ ..+++.... ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~------~d---~~~~~------~~g~d~~~~------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLK------FD---YKAYL------LPGMDKWGG------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccccc------cC---cCCCc------cCCcCCCCC------ccCCCCCc
Confidence 89999999999999999999753110 01000 00 00011 111111111 01236789
Q ss_pred CCChhhHHHhhcccCCCCCccccc-cCcceeeeccCceEEEEEEEecCC-CCHHHHHH-------HHHHHH--hCCCcEE
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGY-AAGTARGMATRARVAAYKVCWVGG-CFSSDILA-------AIEQAI--DDNVNVL 277 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVI 277 (762)
+||||||||||||+.....+.+++ ....+.||||+|+|+++|+|...+ .....+.. +++|++ +++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999999986443332221 123458999999999999997544 32222333 344443 6799999
Q ss_pred EEccCCCCCCCc-----ccHHHHHHHH-HHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 278 SMSLGGGTSDYY-----KDSVAIGAFA-AMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 278 n~SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
|||||....... .+..+..... +.++|+++|+||||+|+... ..++.++++|+|||++..+..+...
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~----- 210 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL----- 210 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-----
Confidence 999998542211 1222222222 24899999999999998643 4567889999999975332100000
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
...
T Consensus 211 --------------------~~~--------------------------------------------------------- 213 (311)
T cd07497 211 --------------------FGY--------------------------------------------------------- 213 (311)
T ss_pred --------------------hcc---------------------------------------------------------
Confidence 000
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.....+.+++||||||+.+ +++||||+|||
T Consensus 214 ------------------------------------------------~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG 243 (311)
T cd07497 214 ------------------------------------------------LPGGSGDVVSWSSRGPSIA--GDPKPDLAAIG 243 (311)
T ss_pred ------------------------------------------------ccCCCCCccccccCCCCcc--cCCCCceeccC
Confidence 0012347899999999987 89999999999
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004301 510 VNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP------EWSPAAIRSALMTTA 574 (762)
Q Consensus 510 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~~sp~~ik~~L~~TA 574 (762)
++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999876542100 011123799999999999999999999999876 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.2e-47 Score=419.22 Aligned_cols=311 Identities=29% Similarity=0.372 Sum_probs=233.3
Q ss_pred CCcCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCC-----CcccccccCCCCCCCCCCceeeeeeeccccccccCCC
Q 004301 122 LFPTSG-SASEVIVGVLDTGVWPESKSFDDTGLGPVPS-----SWKGACETGTNFNASNCNRKLIGARYFARGYEATLGP 195 (762)
Q Consensus 122 ~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 195 (762)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. -...+++.+++..++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--- 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDDI--- 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCcc---
Confidence 688887 9999999999999999999998754332111 11111111 12235677888888887653211
Q ss_pred CCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEec--CC-CCHHHHHHHHHHHHhC
Q 004301 196 IDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWV--GG-CFSSDILAAIEQAIDD 272 (762)
Q Consensus 196 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~ 272 (762)
....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+ .....+++|++++++.
T Consensus 76 -------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~ 143 (346)
T cd07475 76 -------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKL 143 (346)
T ss_pred -------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHc
Confidence 11457889999999999998654221 123589999999999999974 33 7788899999999999
Q ss_pred CCcEEEEccCCCCCC-CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc----------------cCCCCceEEecCCC
Q 004301 273 NVNVLSMSLGGGTSD-YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL----------------SNVAPWITTVGAGT 335 (762)
Q Consensus 273 g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVgA~~ 335 (762)
|++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+..
T Consensus 144 g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~ 223 (346)
T cd07475 144 GADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN 223 (346)
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecc
Confidence 999999999986532 4456677788889999999999999998654321 12334555555432
Q ss_pred CCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHH
Q 004301 336 LDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAV 415 (762)
Q Consensus 336 ~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~ 415 (762)
..
T Consensus 224 ~~------------------------------------------------------------------------------ 225 (346)
T cd07475 224 KK------------------------------------------------------------------------------ 225 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 416 VKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 416 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
........++.||+|||+.
T Consensus 226 -------------------------------------------------------------~~~~~~~~~~~~S~~G~~~ 244 (346)
T cd07475 226 -------------------------------------------------------------VPNPNGGQMSGFSSWGPTP 244 (346)
T ss_pred -------------------------------------------------------------cCCCCCCccCCCcCCCCCc
Confidence 0012234678999999998
Q ss_pred CCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhh----CCCCCHHH----HH
Q 004301 496 ITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPAA----IR 567 (762)
Q Consensus 496 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~sp~~----ik 567 (762)
. .++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||
T Consensus 245 ~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik 309 (346)
T cd07475 245 D--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVK 309 (346)
T ss_pred c--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 6 799999999999999987664 7899999999999999999999998 79999876 78
Q ss_pred HHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCC
Q 004301 568 SALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 568 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
.+|++||.+... ......++.+..+|+|+||+.+|++
T Consensus 310 ~~l~~ta~~~~~------~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 310 NLLMNTATPPLD------SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHhcCCcccc------cCCCCccCCccccCcchhcHHHhhC
Confidence 899999985321 1122566788899999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=6.8e-48 Score=429.95 Aligned_cols=406 Identities=24% Similarity=0.294 Sum_probs=242.3
Q ss_pred CCCCCcEEEEEcccCCCCCCCCCC-CCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccc-ccccCCCCCCCCCCCC
Q 004301 127 GSASEVIVGVLDTGVWPESKSFDD-TGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG-YEATLGPIDESKESKS 204 (762)
Q Consensus 127 ~~G~Gv~VgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~-~~~~~~~~~~~~~~~~ 204 (762)
++|+||+|||||||||+.||+|++ +|.+|+...|++....+..-. ...+...+... .+.... ...+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~-~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALA-SDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHh-cCCccccCc
Confidence 479999999999999999999996 678899999998876543211 11111111110 000000 011222234
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-----------CCHHHHHHHHHHHHhC-
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-----------CFSSDILAAIEQAIDD- 272 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~- 272 (762)
..|..||||||||||||+..++. .+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 57899999999999999965422 248999999999999998765 4688999999999874
Q ss_pred ----CCcEEEEccCCCC-CCCcccHHHHHHHHHHhc-CCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEc
Q 004301 273 ----NVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEK-GILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 273 ----g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
.+.|||||||... +....+.++.++..+.++ |++||+||||+|....+..+.. ... ...-...+.+
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~~~----~~~~~ie~~v 217 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----VPN----GETKTVELNV 217 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----ccC----CceEEEEEEE
Confidence 4789999999865 334456777777777766 9999999999998655443210 000 0000112222
Q ss_pred CCCcEEEeEeeecCCC---------CCCceeeEEEccCCCC------CCCCCcccCCCCCccccCCcEEEEeCCCchhhh
Q 004301 347 GNGQNYSGVSLYKGDG---------LPGKLLPFVYAGNASN------ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQ 411 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~---------~~~~~~p~v~~~~~~~------~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~ 411 (762)
+.+..-....+|...+ +.....+.+....... -.....|.... .+....|.-.+..+
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~------- 289 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR------- 289 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE-------
Confidence 2222211122222110 0000000000000000 00000111100 11122222222111
Q ss_pred HHHHHHHcCceEEEEeecCC-CCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEeccee------ecC-cCCC
Q 004301 412 KGAVVKAAGGLGMVLANTES-NGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTK------VGV-EPSP 483 (762)
Q Consensus 412 ~~~~~~~~Ga~g~i~~n~~~-~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~------~~~-~~~~ 483 (762)
..+ ...|-.-+.++.... .+. -..|+|.-.+...+..++ +. .+..+++.+.+. ... ...+
T Consensus 290 -~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~--~~~~tit~Pa~~~~vitVga~~~~~~ 357 (455)
T cd07478 290 -FKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EP--DPYTTLTIPGTARSVITVGAYNQNNN 357 (455)
T ss_pred -ccC-CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cC--CCCceEecCCCCCCcEEEEEEeCCCC
Confidence 011 122344444443321 111 134555443333322222 11 223334333221 111 2234
Q ss_pred eeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-----
Q 004301 484 VVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH----- 558 (762)
Q Consensus 484 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----- 558 (762)
.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|.+
T Consensus 358 ~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~ 422 (455)
T cd07478 358 SIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGN 422 (455)
T ss_pred cccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccC
Confidence 6999999999987 899999999999999999864 89999999999999999999999875
Q ss_pred -CCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCC
Q 004301 559 -PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601 (762)
Q Consensus 559 -p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 601 (762)
|.|++++||++|++||+++. +..+++++||||
T Consensus 423 ~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 423 DPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 345677899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-46 Score=405.41 Aligned_cols=294 Identities=31% Similarity=0.390 Sum_probs=227.9
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
+.+|..+++|+||+|||||+|||++||+|.++-.. +.++.+.++|...... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 56899999999999999999999999999864110 1122333333322100 00112
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLS 278 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn 278 (762)
.+...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|++++.+ .....+++++++|++++++|||
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn 129 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVIT 129 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 23345677899999999999998643 12 48999999999999998666 6677789999999999999999
Q ss_pred EccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeE
Q 004301 279 MSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355 (762)
Q Consensus 279 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (762)
||||.... +..+.+..++.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 130 ~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 130 ASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred eCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 99998542 23366777777899999999999999987543 3355677888888621
Q ss_pred eeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc
Q 004301 356 SLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435 (762)
Q Consensus 356 s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 435 (762)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 004301 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 436 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 515 (762)
+.||++||+.+ ...||||+|||++++++
T Consensus 189 --------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~ 216 (312)
T cd07489 189 --------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILST 216 (312)
T ss_pred --------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEe
Confidence 46899999987 78999999999999999
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccccCCcccccccCCCCCC
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH-PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAST 594 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 594 (762)
++...+ .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..-.. ...++
T Consensus 217 ~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~~ 282 (312)
T cd07489 217 YPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLAP 282 (312)
T ss_pred eeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCCC
Confidence 877522 58999999999999999999999999 9999999999999999987543221111 11356
Q ss_pred CCCCCCCCcCccccCCCCe
Q 004301 595 PFDHGAGHVNPVSALNPGL 613 (762)
Q Consensus 595 ~~~~G~G~vd~~~A~~~~l 613 (762)
...+|||+||+.+|++..-
T Consensus 283 ~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 283 VAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HhhcCcceeeHHHHhcCCc
Confidence 6799999999999998543
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.5e-46 Score=392.65 Aligned_cols=246 Identities=27% Similarity=0.352 Sum_probs=202.5
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|..+++|+||+|||||+|||.+||+|++..+.+... +.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc-------------c
Confidence 7999999999999999999999999998642111000 000 0
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEE
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSM 279 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 279 (762)
.....|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 113456789999999999987421 247999999999999998654 44778999999999999999999
Q ss_pred ccCCCC-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeee
Q 004301 280 SLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLY 358 (762)
Q Consensus 280 SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~ 358 (762)
|||... .......+..++.+|.++|+++|+||||+|.....+++..|++|+|||++.
T Consensus 113 S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 170 (267)
T cd07476 113 SGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------- 170 (267)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------
Confidence 999754 233456678888899999999999999999887788888999999998421
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccc
Q 004301 359 KGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438 (762)
Q Consensus 359 ~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 438 (762)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccC
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSG 518 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 518 (762)
.+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 171 -------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~ 202 (267)
T cd07476 171 -------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG 202 (267)
T ss_pred -------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC
Confidence 11457899999864 378999999999998876
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccc
Q 004301 519 AVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE----WSPAAIRSALMTTAYVSYK 579 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----~sp~~ik~~L~~TA~~~~~ 579 (762)
+ .|..++|||||||||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 203 ~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 203 G-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred C-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 4 7999999999999999999999999887 8999999999999999854
No 10
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=9.1e-46 Score=392.79 Aligned_cols=269 Identities=28% Similarity=0.373 Sum_probs=189.8
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCC-CCCCcccccccCCCCCCCCCCceeeeeeecccccccc----CCCCC------C
Q 004301 130 SEVIVGVLDTGVWPESKSFDDTGLGP-VPSSWKGACETGTNFNASNCNRKLIGARYFARGYEAT----LGPID------E 198 (762)
Q Consensus 130 ~Gv~VgVIDtGid~~Hp~f~~~g~~~-~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~----~~~~~------~ 198 (762)
|+|+|||||||||++||+|++..... .....+|....+.+|... +++++|...+... +.+.+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998752110 000112222222222211 2333333211000 00000 0
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLS 278 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 278 (762)
+.+...+.+..+|||||||||+|...+..+ +.||||+|+|+.+|++........++++||+||+++|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 112234557899999999999998644322 489999999999999865446778999999999999999999
Q ss_pred EccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC---cc--------CCCCceEEecCCCCCCccceeEEcC
Q 004301 279 MSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS---LS--------NVAPWITTVGAGTLDRDFPAFVSLG 347 (762)
Q Consensus 279 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~~ 347 (762)
||||..... ....+..++.+|.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999975322 23456677778999999999999999865321 11 1234556666532111
Q ss_pred CCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEe
Q 004301 348 NGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 348 ~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 427 (762)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEe
Q 004301 428 NTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIA 507 (762)
Q Consensus 428 n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 507 (762)
....++.||++|+.. |||.|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~~-------vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKKN-------VDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCCc-------eEEEe
Confidence 011468899999753 49999
Q ss_pred cCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 508 PGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 508 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999997764 7999999999999999999999999999999999999999984
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-45 Score=390.28 Aligned_cols=289 Identities=39% Similarity=0.560 Sum_probs=216.6
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCC-C-CCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLG-P-IDESKESKSPR 206 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~-~-~~~~~~~~~~~ 206 (762)
|+||+|||||+||+++||+|.+.. ..+.+++..++|......... . ...........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 123345555555432111000 0 00000112245
Q ss_pred CCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 004301 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGT 285 (762)
Q Consensus 207 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 285 (762)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68999999999999985442 2348999999999999998554 78889999999999999999999999754
Q ss_pred CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc--cCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCC
Q 004301 286 SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL--SNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGL 363 (762)
Q Consensus 286 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~ 363 (762)
.. ..+.+..++.++.++|+++|+||||+|...... +...+++|+|||+.....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 32 346677788899999999999999998765543 567889999998531100
Q ss_pred CCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCccc
Q 004301 364 PGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLL 443 (762)
Q Consensus 364 ~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 443 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccC-CCCCCCCCCCCCCcEEecCCcEEecccCCCCC
Q 004301 444 PATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSS-RGPNSITPELLKPDMIAPGVNILAGWSGAVGP 522 (762)
Q Consensus 444 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs-~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 522 (762)
........|++ .|+... ..+||||+|||++|+++++...
T Consensus 187 ------------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 187 ------------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred ------------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCC--
Confidence 00113344444 455554 7899999999999999987631
Q ss_pred CCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCC
Q 004301 523 TGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGH 602 (762)
Q Consensus 523 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 602 (762)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+
T Consensus 227 ---------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~ 289 (295)
T cd07474 227 ---------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGR 289 (295)
T ss_pred ---------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcce
Confidence 278999999999999999999999999999999999999999998764331 223456999999
Q ss_pred cCcccc
Q 004301 603 VNPVSA 608 (762)
Q Consensus 603 vd~~~A 608 (762)
||+.+|
T Consensus 290 l~~~~A 295 (295)
T cd07474 290 VDALRA 295 (295)
T ss_pred eccccC
Confidence 999987
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-46 Score=382.17 Aligned_cols=234 Identities=27% Similarity=0.370 Sum_probs=191.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004301 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGH 211 (762)
Q Consensus 132 v~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 211 (762)
|+|||||||||.+||+|+++- +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999997531 10011100 125567899
Q ss_pred hhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC----CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 004301 212 GTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG----CFSSDILAAIEQAIDDNVNVLSMSLGGGTSD 287 (762)
Q Consensus 212 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 287 (762)
||||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+..
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 5999999999999998642 67788999999999999999999999743
Q ss_pred CcccHHHHHHHHHHhcCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCc
Q 004301 288 YYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGK 366 (762)
Q Consensus 288 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~ 366 (762)
...+..++.++.++|+++|+||||+|... ..+++..|++|+|++++.
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34566777799999999999999999764 356777889999987421
Q ss_pred eeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceE
Q 004301 367 LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPAT 446 (762)
Q Consensus 367 ~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 446 (762)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCC
Q 004301 447 AVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLA 526 (762)
Q Consensus 447 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 526 (762)
.+.+++||++|+.. ||+|||++|+++.+.+
T Consensus 154 -----------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------- 183 (239)
T cd05561 154 -----------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------- 183 (239)
T ss_pred -----------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC-------
Confidence 12567899999876 9999999999977654
Q ss_pred CCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCC
Q 004301 527 TDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601 (762)
Q Consensus 527 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 601 (762)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 ------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 ------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred ------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999873 44555689998
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.6e-44 Score=379.12 Aligned_cols=247 Identities=32% Similarity=0.418 Sum_probs=195.2
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
|+||+|||||+||+++||+|.+. |++..... +...+++.+ .......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~-----------------~~~~~~~~d----~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS-----------------ADHDYNWFD----PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC-----------------ccccccccc----CCCCCCCCCCC
Confidence 89999999999999999999864 11110000 000111000 01112346788
Q ss_pred CCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh------------CCCcE
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID------------DNVNV 276 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dV 276 (762)
.+|||||||||+|..... ...||||+|+|+.+|+++..++...+++++++++++ .|++|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 999999999999874322 127999999999999998877888899999999975 78999
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEE
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 353 (762)
||||||.... ....+..++..+.++|++||+||||++.... .++...|++|+|||.+.
T Consensus 123 in~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------- 183 (264)
T cd07481 123 INNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------- 183 (264)
T ss_pred EEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------
Confidence 9999998643 2345556666888999999999999986644 25677889999998432
Q ss_pred eEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC
Q 004301 354 GVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG 433 (762)
Q Consensus 354 g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 433 (762)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEE
Q 004301 434 EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNIL 513 (762)
Q Consensus 434 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 513 (762)
.+.++.||++||... +++||||+|||.+|+
T Consensus 184 ------------------------------------------------~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~ 213 (264)
T cd07481 184 ------------------------------------------------NDVLADFSSRGPSTY--GRIKPDISAPGVNIR 213 (264)
T ss_pred ------------------------------------------------CCCCccccCCCCCCC--CCcCceEEECCCCeE
Confidence 125688999999986 799999999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004301 514 AGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE--WSPAAIRSALMTTAY 575 (762)
Q Consensus 514 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--~sp~~ik~~L~~TA~ 575 (762)
++++.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 214 s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 214 SAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 998764 7899999999999999999999999999 999999999999985
No 14
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=381.17 Aligned_cols=325 Identities=30% Similarity=0.444 Sum_probs=257.5
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCC---CC----------------cEEEEEc---ceeeEEEEEcCHHHH
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVSD---SA----------------EILYTYD---NVIHGFSTQLTREEA 85 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~----------------~v~~~y~---~~~~g~s~~~~~~~~ 85 (762)
.+.+|||.|++.........|.+++++....... .. .+.+.|. .+++|..-..+.+-+
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 4789999999877766777777777655432211 00 1333333 267788888899999
Q ss_pred HHHhcCCCeEEEEeCceeccCC-----CCCCcccCCcCCCC-------CC----cCCCCCCCcEEEEEcccCCCCCCCCC
Q 004301 86 ESLEQRPGILSVLPELKYELHT-----TRSPEFLGLDKSAN-------LF----PTSGSASEVIVGVLDTGVWPESKSFD 149 (762)
Q Consensus 86 ~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~Gv~VgVIDtGid~~Hp~f~ 149 (762)
..++..|-++.++++...+... .+....|||.++.. -| ..-..|+||...|+||||+..||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998877654 44555678766422 11 12347999999999999999999999
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCcc
Q 004301 150 DTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASL 229 (762)
Q Consensus 150 ~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~ 229 (762)
++ ..| |..+.. .....|++||||||||+|++..
T Consensus 239 gR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt------ 271 (501)
T KOG1153|consen 239 GR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT------ 271 (501)
T ss_pred cc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc------
Confidence 76 334 222110 1125789999999999999885
Q ss_pred ccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC---------CCcEEEEccCCCCCCCcccHHHHHHHH
Q 004301 230 FGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD---------NVNVLSMSLGGGTSDYYKDSVAIGAFA 299 (762)
Q Consensus 230 ~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a~~~ 299 (762)
.|||.+++|+++||++++| ++.+++++++|++++. +..|.|||+|+..+ -++..|+.+
T Consensus 272 --------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~ 339 (501)
T KOG1153|consen 272 --------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNA 339 (501)
T ss_pred --------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHH
Confidence 7999999999999999998 9999999999999986 47899999999654 456677779
Q ss_pred HHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCC
Q 004301 300 AMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASN 378 (762)
Q Consensus 300 a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~ 378 (762)
|.+.|+++++||||+..+.+ +.|+.+..+|||||++..
T Consensus 340 A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------------------------- 378 (501)
T KOG1153|consen 340 ASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------------------------- 378 (501)
T ss_pred HhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------------------------
Confidence 99999999999999998876 556788999999996422
Q ss_pred CCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHH
Q 004301 379 ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKS 458 (762)
Q Consensus 379 ~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 458 (762)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeec
Q 004301 459 YLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538 (762)
Q Consensus 459 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 538 (762)
+.+|.||+||++. ||.|||++|+|+|.+... ...+.|
T Consensus 379 ------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilS 415 (501)
T KOG1153|consen 379 ------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILS 415 (501)
T ss_pred ------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheee
Confidence 2789999999999 999999999999998643 668999
Q ss_pred cccchhhhHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 004301 539 GTSMSCPHVSGLAALLKAAHPE---------WSPAAIRSALMTTAY 575 (762)
Q Consensus 539 GTSmAaP~VAG~aALl~~~~p~---------~sp~~ik~~L~~TA~ 575 (762)
|||||+|||||++|.+++.+|. .+|.++|..+..=..
T Consensus 416 GTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 416 GTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999999999883 378888887766543
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-44 Score=376.41 Aligned_cols=243 Identities=32% Similarity=0.378 Sum_probs=194.9
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+||||||||+++||+|.... ..++.++.+.++|..... ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999995210 013346666666654420 01367889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG---CFSSDILAAIEQAIDDNVNVLSMSLGGGTSD 287 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 287 (762)
|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.|++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999742 2248999999999999876432 3455788999999999999999999986422
Q ss_pred Cc------------ccHHHHHHHHHHhcCCEEEEecCCCCCC---CCCccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 288 YY------------KDSVAIGAFAAMEKGILVSCSAGNAGPS---SYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 288 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
.. ...+..++..+.++|+++|+||||+|.. ...++...+++|+|||...
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 182 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------- 182 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------
Confidence 11 2356677788999999999999999987 3456778899999998421
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
.+.++.||++||+.+ +++||||+|||.++
T Consensus 183 -------------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~ 211 (261)
T cd07493 183 -------------------------------------------------NGNKASFSSIGPTAD--GRLKPDVMALGTGI 211 (261)
T ss_pred -------------------------------------------------CCCCCccCCcCCCCC--CCcCCceEecCCCe
Confidence 115678999999986 89999999999999
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 212 ~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 212 YVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 8854432 7899999999999999999999999999999999999999985
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=8.2e-44 Score=384.91 Aligned_cols=220 Identities=26% Similarity=0.289 Sum_probs=165.6
Q ss_pred CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC---CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG---CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 206 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 477899999999999985332 2248999999999999986542 23457999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHH-HHhcCCEEEEecCCCCCCCCCcc--C-CCCceEEecCCCCCCccceeEEcCCCcEEEeEeee
Q 004301 283 GGTSDYYKDSVAIGAFA-AMEKGILVSCSAGNAGPSSYSLS--N-VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLY 358 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~ 358 (762)
..........+..++.+ +.++|+++|+||||+|+..+++. + ..+++|+|||......+....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y-------------- 319 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY-------------- 319 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc--------------
Confidence 86532222233333333 45789999999999998766543 2 468999999953222100000
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccc
Q 004301 359 KGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438 (762)
Q Consensus 359 ~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 438 (762)
..
T Consensus 320 --------------------------~~---------------------------------------------------- 321 (412)
T cd04857 320 --------------------------SL---------------------------------------------------- 321 (412)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred cCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccC
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSG 518 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 518 (762)
.....+.++.||||||+.+ +.+||||+|||+.|.+. +.
T Consensus 322 ---------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~-p~ 359 (412)
T cd04857 322 ---------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASV-PN 359 (412)
T ss_pred ---------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEc-cc
Confidence 0011236789999999997 89999999999999875 21
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 004301 519 AVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVS 577 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~ 577 (762)
.. ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 360 ~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 360 WT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 10 12689999999999999999999975 478999999999999999864
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.4e-43 Score=373.78 Aligned_cols=262 Identities=29% Similarity=0.362 Sum_probs=200.8
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|..+++|+||+|+|||||||++||+|.+..... .+ ..+...+.... .....
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------------~~~~~~~~~~~---~~~~~ 53 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------------DPAVNGYNFVP---NVGDI 53 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------------ccccCCccccc---ccCCc
Confidence 7999999999999999999999999998641100 00 00001110000 00011
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEc
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMS 280 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S 280 (762)
.....|..||||||||||+|+..+....-|.+ .+.|+||+|+|+.+|++...+ +...++++||+|+++.|++|||||
T Consensus 54 ~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S 131 (273)
T cd07485 54 DNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNS 131 (273)
T ss_pred CCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEec
Confidence 22356788999999999999764432221221 235799999999999998765 778889999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHHHhc-------CCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEE
Q 004301 281 LGGGTSDYYKDSVAIGAFAAMEK-------GILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353 (762)
Q Consensus 281 lG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 353 (762)
||......+...+..++..+.++ |+++|+||||++.....+++..|++|+|++++.+
T Consensus 132 ~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~---------------- 195 (273)
T cd07485 132 WGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN---------------- 195 (273)
T ss_pred CCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC----------------
Confidence 99865444556677777788888 9999999999998877778888999999985321
Q ss_pred eEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC
Q 004301 354 GVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG 433 (762)
Q Consensus 354 g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 433 (762)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC-cE
Q 004301 434 EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV-NI 512 (762)
Q Consensus 434 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I 512 (762)
+.++.||++|+.. ||+|||. .|
T Consensus 196 -------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i 218 (273)
T cd07485 196 -------------------------------------------------DNKASFSNYGRWV--------DIAAPGVGTI 218 (273)
T ss_pred -------------------------------------------------CCcCccccCCCce--------EEEeCCCCcc
Confidence 2567899999876 9999999 89
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE-WSPAAIRSALMTT 573 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-~sp~~ik~~L~~T 573 (762)
+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 219 ~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 219 LSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 888765311 11237899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-43 Score=369.31 Aligned_cols=256 Identities=34% Similarity=0.486 Sum_probs=203.5
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc----------cCCCCCCCC
Confidence 89999999999999999999864110 0 0010000 112245677
Q ss_pred CCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC----CCcEEEEccCC
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD----NVNVLSMSLGG 283 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 283 (762)
.+|||||||+|+|...+. .+.+.|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999986432 12248999999999999998876 6788999999999998 99999999998
Q ss_pred CCC-CCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecC
Q 004301 284 GTS-DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKG 360 (762)
Q Consensus 284 ~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~ 360 (762)
... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 653 445677888888999999999999999998775 55677899999998543221
Q ss_pred CCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccC
Q 004301 361 DGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADA 440 (762)
Q Consensus 361 ~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 440 (762)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCC
Q 004301 441 HLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAV 520 (762)
Q Consensus 441 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 520 (762)
....++.||++||+.. +++||||+|||++|+++.+...
T Consensus 176 ----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~ 213 (264)
T cd07487 176 ----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGG 213 (264)
T ss_pred ----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccc
Confidence 0014788999999987 8999999999999999865431
Q ss_pred CCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 521 GPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 521 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
.. .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 214 ~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 214 NP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 11 1112247899999999999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.5e-42 Score=362.44 Aligned_cols=232 Identities=38% Similarity=0.533 Sum_probs=193.7
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999753 1111222211
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC-----CCc
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD-----NVN 275 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~d 275 (762)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++++|+++. +++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 115678899999999999863 6999999999999998875 6778899999999987 489
Q ss_pred EEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEEEe
Q 004301 276 VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSG 354 (762)
Q Consensus 276 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g 354 (762)
|||||||... ...+..++.++.++|+++|+||||+|... ...++..|++|+|||.+.+
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 9999999864 45566677789999999999999999776 4567788999999985321
Q ss_pred EeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCc
Q 004301 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGE 434 (762)
Q Consensus 355 ~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 434 (762)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEe
Q 004301 435 ELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILA 514 (762)
Q Consensus 435 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 514 (762)
+.+++||++||.. ||+|||.+|.+
T Consensus 181 ------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 181 ------------------------------------------------DARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred ------------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEe
Confidence 1467899999976 99999999999
Q ss_pred cccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004301 515 GWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYV 576 (762)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~ 576 (762)
+..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 877421 278999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2.4e-42 Score=362.13 Aligned_cols=241 Identities=34% Similarity=0.453 Sum_probs=200.4
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+ +|+||+|||||+||+++||+|... ++...+++...
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 35689888 999999999999999999998432 12222222221
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 277 (762)
...+.|..+|||||||||++...+.. .+.|+||+|+|+.+|+++..+ +...++++||+++++.|++||
T Consensus 61 ---~~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 61 ---DSDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEE
Confidence 11256788999999999998753322 248999999999999998765 778899999999999999999
Q ss_pred EEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 278 SMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 278 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
|||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 130 n~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 130 NLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred EecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 99999854 3456777777889999999999999999888889999999999984321
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
+.++.||++|+.. |++|||.+|+++.+
T Consensus 187 ---------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~ 213 (260)
T cd07484 187 ---------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTP 213 (260)
T ss_pred ---------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecC
Confidence 1457889999865 99999999999876
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVS 577 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~ 577 (762)
.. .|..++|||||||+|||++||+++++| +++.+||++|++||+++
T Consensus 214 ~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 DG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 63 799999999999999999999999999 99999999999999875
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-42 Score=365.31 Aligned_cols=207 Identities=32% Similarity=0.443 Sum_probs=167.9
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHH----------hCC
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAI----------DDN 273 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 273 (762)
...+..+|||||||||+|...+.. | +.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 355788999999999999864322 2 3799999999999999887778899999999998 457
Q ss_pred CcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 274 VNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 274 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
++|||||||..... ...+..++..+.++|++||+||||++... ..+++..+++|+|||++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 89999999985432 45667777789999999999999999876 5677888999999985321
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
+.+++||++|+.. ||.|||++|
T Consensus 201 --------------------------------------------------~~~~~~S~~g~~v--------di~apG~~i 222 (285)
T cd07496 201 --------------------------------------------------GQRASYSNYGPAV--------DVSAPGGDC 222 (285)
T ss_pred --------------------------------------------------CCcccccCCCCCC--------CEEeCCCCc
Confidence 2568899999976 999999999
Q ss_pred EecccCCCCCC--CCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 513 LAGWSGAVGPT--GLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 513 ~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 223 ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 98876532110 00111122478999999999999999999999999999999999999976
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=370.27 Aligned_cols=262 Identities=29% Similarity=0.255 Sum_probs=185.7
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCh
Q 004301 133 IVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHG 212 (762)
Q Consensus 133 ~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 212 (762)
+|||||||||.+||+|.+.- .....+... ...+.|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999997530 000011000 00156889999
Q ss_pred hhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-----CCHHHHHHHHHHHHhCC---CcEEEEccCCC
Q 004301 213 THTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-----CFSSDILAAIEQAIDDN---VNVLSMSLGGG 284 (762)
Q Consensus 213 ThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~~ 284 (762)
|||||||++..... ....|+||+|+|+.+|++.+.| ....++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 99999999764331 1237999999999999998763 56678999999999853 49999999986
Q ss_pred CCCCc--ccHHHHHHH-HHHhcCCEEEEecCCCCCCCCC------------ccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 285 TSDYY--KDSVAIGAF-AAMEKGILVSCSAGNAGPSSYS------------LSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 285 ~~~~~--~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
..... ...+..++. .+.++|++||+||||++..... .++.++++|+|||.+.+......-
T Consensus 114 ~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s----- 188 (291)
T cd04847 114 LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA----- 188 (291)
T ss_pred CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-----
Confidence 53221 123444443 3568999999999999987643 245678999999975543210000
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
.+
T Consensus 189 -------~~----------------------------------------------------------------------- 190 (291)
T cd04847 189 -------RY----------------------------------------------------------------------- 190 (291)
T ss_pred -------cc-----------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
+.......+.||+|||... +.+||||+|||
T Consensus 191 ------------------------------------------------~~~~~~~~~~fs~~Gp~~~--~~~KPDl~apG 220 (291)
T cd04847 191 ------------------------------------------------SAVGPAPAGATTSSGPGSP--GPIKPDVVAFG 220 (291)
T ss_pred ------------------------------------------------cccccccCCCccccCCCCC--CCcCCcEEeeC
Confidence 0000012334999999987 89999999999
Q ss_pred CcEEecccCCCCC-----CCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 510 VNILAGWSGAVGP-----TGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 510 ~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 221 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 221 GNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9998864421100 00001112347999999999999999999999999999999999999999985
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-42 Score=358.26 Aligned_cols=253 Identities=36% Similarity=0.446 Sum_probs=187.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+|||||+|||++||+|.+. +...++|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11111121110 011223567889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCcc
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK 290 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 290 (762)
|||||||||+|+..+ +...||||+|+|+.+|++...++...++++||+|+++.+++|||||||..... .
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~ 113 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--E 113 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--C
Confidence 999999999998641 22479999999999999987777889999999999999999999999986533 4
Q ss_pred cHHHHHHHHHHh-cCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceee
Q 004301 291 DSVAIGAFAAME-KGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLP 369 (762)
Q Consensus 291 ~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p 369 (762)
+.+..++..+.+ +|++||+||||+|......++..+++|+|||++.+........
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------------ 169 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------------ 169 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC------------------------
Confidence 455555544444 6999999999999887788888999999999754332000000
Q ss_pred EEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEc
Q 004301 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVG 449 (762)
Q Consensus 370 ~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 449 (762)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCC
Q 004301 450 QKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDS 529 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 529 (762)
........++.+|... ....|||++|||.+|+++.... .
T Consensus 170 -------------------------------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~ 208 (254)
T cd07490 170 -------------------------------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------N 208 (254)
T ss_pred -------------------------------CcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------C
Confidence 0001112223333332 2568999999999999865221 1
Q ss_pred cccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 530 RRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 530 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 209 ~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1237999999999999999999999999999999999999999984
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-42 Score=364.28 Aligned_cols=251 Identities=26% Similarity=0.364 Sum_probs=182.7
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|+++++|+||+||||||||+..|| |..+++ .+. + .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC----------
Confidence 3569999999999999999999999898 754311 000 0 00000
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLS 278 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 278 (762)
......|+.||||||||++ .||||+|+|+.+|++++ ...++++||+||+++|++|||
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn 109 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIIS 109 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEE
Confidence 0123567889999999865 59999999999999864 566789999999999999999
Q ss_pred EccCCCCCC----------CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCC
Q 004301 279 MSLGGGTSD----------YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGN 348 (762)
Q Consensus 279 ~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 348 (762)
||||..... .....+..++.+|.++|++||+||||++. .+|+..|++|+|||++.+..
T Consensus 110 ~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--------- 177 (298)
T cd07494 110 NSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--------- 177 (298)
T ss_pred eecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------
Confidence 999985421 12345777888899999999999999874 56889999999999643221
Q ss_pred CcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEee
Q 004301 349 GQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLAN 428 (762)
Q Consensus 349 g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 428 (762)
+..
T Consensus 178 g~~----------------------------------------------------------------------------- 180 (298)
T cd07494 178 GAR----------------------------------------------------------------------------- 180 (298)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcE---
Q 004301 429 TESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDM--- 505 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI--- 505 (762)
......+.|++. ..+++.|||+
T Consensus 181 ---------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~ 205 (298)
T cd07494 181 ---------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGL 205 (298)
T ss_pred ---------------------------------------------------cccccccCcccc----cCCCCccCccccc
Confidence 000000111111 1235667776
Q ss_pred -------------EecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 004301 506 -------------IAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMT 572 (762)
Q Consensus 506 -------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~ 572 (762)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|++
T Consensus 206 ~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ 280 (298)
T cd07494 206 VGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNK 280 (298)
T ss_pred cCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4799998765432100 0011247999999999999999999999999999999999999999
Q ss_pred cccccc
Q 004301 573 TAYVSY 578 (762)
Q Consensus 573 TA~~~~ 578 (762)
||+++.
T Consensus 281 ta~~~~ 286 (298)
T cd07494 281 TARDVT 286 (298)
T ss_pred hCcccC
Confidence 999874
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.6e-41 Score=362.46 Aligned_cols=277 Identities=31% Similarity=0.374 Sum_probs=200.5
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004301 125 TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKS 204 (762)
Q Consensus 125 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 58899999999999999999999976421 0001 12333433322211 1
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
..|..+|||||||||+|+..+.... ..+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 2378999999999999986543211 1248999999999999998765 55667889999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHH-h-cCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 283 GGTSDYYKDSVAIGAFAAM-E-KGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
......+ .....++.++. + +|+++|+||||+|.... ..++..+++|+|||++.......
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------------- 188 (293)
T cd04842 125 SPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------------- 188 (293)
T ss_pred CCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------------
Confidence 8654212 22333333333 3 89999999999998765 66778899999999755432000
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
..|..
T Consensus 189 -------------------------~~~~~-------------------------------------------------- 193 (293)
T cd04842 189 -------------------------EGGLG-------------------------------------------------- 193 (293)
T ss_pred -------------------------ccccc--------------------------------------------------
Confidence 00000
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.......++.||++||+.. +++||||+|||++|+++.+
T Consensus 194 ----------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~ 231 (293)
T cd04842 194 ----------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARS 231 (293)
T ss_pred ----------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccC
Confidence 0022336899999999986 8999999999999999875
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH-----P---EWSPAAIRSALMTTAY 575 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~~sp~~ik~~L~~TA~ 575 (762)
.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 232 ~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 232 GGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 5300 011122478999999999999999999999985 4 6677899999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-41 Score=349.04 Aligned_cols=239 Identities=31% Similarity=0.422 Sum_probs=188.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004301 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGH 211 (762)
Q Consensus 132 v~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 211 (762)
|+|||||+||+++||+|.+.. +++..+.+.. ....+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999998520 0000011110 01135678899
Q ss_pred hhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCC-CCc
Q 004301 212 GTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTS-DYY 289 (762)
Q Consensus 212 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~-~~~ 289 (762)
||||||||+|+..+.. .+.|+||+|+|+.+|+++..+ +...++.++++|+++.+++|||||||.... ...
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999999999853322 248999999999999998765 678889999999999999999999998653 334
Q ss_pred ccHHHHHHHHHHh-cCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCcee
Q 004301 290 KDSVAIGAFAAME-KGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLL 368 (762)
Q Consensus 290 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~ 368 (762)
...+..++.++.+ +|+++|+||||+|......++..+++|+|||.+..
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------- 163 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------- 163 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------
Confidence 5667777778888 99999999999998877778889999999985321
Q ss_pred eEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEE
Q 004301 369 PFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAV 448 (762)
Q Consensus 369 p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 448 (762)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCC
Q 004301 449 GQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATD 528 (762)
Q Consensus 449 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 528 (762)
+.+++||++||.. |++|||.++.......... ..
T Consensus 164 ----------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~ 197 (242)
T cd07498 164 ----------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GD 197 (242)
T ss_pred ----------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----cc
Confidence 1467899999976 9999999998875442111 11
Q ss_pred CcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 529 SRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 529 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 198 ~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 198 YPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 122478999999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-41 Score=358.28 Aligned_cols=264 Identities=28% Similarity=0.356 Sum_probs=183.3
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCC
Q 004301 124 PTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESK 203 (762)
Q Consensus 124 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
..+++|+||+|||||+|||.+||+|.+... ..++|... .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 457899999999999999999999975311 11112111 1
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
.+.|..||||||||||+|+..+ +...||||+|+|+.+|++...+ +...++++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467889999999999997543 1236999999999999997655 67778999999999999999999999
Q ss_pred CCCCC----------CcccHHHHHHHHH---------------HhcCCEEEEecCCCCCCCCCcc-----CCCCceEEec
Q 004301 283 GGTSD----------YYKDSVAIGAFAA---------------MEKGILVSCSAGNAGPSSYSLS-----NVAPWITTVG 332 (762)
Q Consensus 283 ~~~~~----------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVg 332 (762)
..... .....+......+ .++|++||+||||++....... ...+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 85411 1112222222233 6799999999999986543221 1112222222
Q ss_pred CCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhH
Q 004301 333 AGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQK 412 (762)
Q Consensus 333 A~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~ 412 (762)
+...
T Consensus 192 ~V~~---------------------------------------------------------------------------- 195 (297)
T cd07480 192 AVGA---------------------------------------------------------------------------- 195 (297)
T ss_pred EECC----------------------------------------------------------------------------
Confidence 2110
Q ss_pred HHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCC
Q 004301 413 GAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRG 492 (762)
Q Consensus 413 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 492 (762)
.+....|+++.
T Consensus 196 ---------------------------------------------------------------------~~~~~~~~~~~ 206 (297)
T cd07480 196 ---------------------------------------------------------------------LGRTGNFSAVA 206 (297)
T ss_pred ---------------------------------------------------------------------CCCCCCccccC
Confidence 00112233333
Q ss_pred CCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 004301 493 PNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMT 572 (762)
Q Consensus 493 p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~ 572 (762)
+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 22 235789999999999988764 8999999999999999999999999999999888888874
Q ss_pred cccccccCCcccccccCCCCCCCCCCCCCCcCcc
Q 004301 573 TAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPV 606 (762)
Q Consensus 573 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~ 606 (762)
......... ......+.++|+|++++.
T Consensus 270 ~l~~~~~~~-------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 270 RLTAARTTQ-------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhhcccCC-------CCCCCChhhcCCceeecC
Confidence 322210000 023345568999999875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-41 Score=353.74 Aligned_cols=244 Identities=24% Similarity=0.275 Sum_probs=176.6
Q ss_pred CCCCcCC-CCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 120 ANLFPTS-GSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 120 ~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
..+|+.. ..|+||+|+|||+|||.+||+|.++... ...+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 4578764 4599999999999999999999864110 0000
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh----CCC
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID----DNV 274 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~ 274 (762)
..+.|+++|||||||||||..+ .+| +.||||+|+|+.+|+++ .++++++|.+|++ .++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v 106 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDV 106 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCE
Confidence 0145788999999999999631 122 37999999999999985 3456777777776 356
Q ss_pred cEEEEccCCCCCC------CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc------------c-CCCCceEEecCCC
Q 004301 275 NVLSMSLGGGTSD------YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL------------S-NVAPWITTVGAGT 335 (762)
Q Consensus 275 dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVgA~~ 335 (762)
.+||||||..... .....+..++.+|.++|+++|+||||++...... + ...|++|+|||++
T Consensus 107 ~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~ 186 (277)
T cd04843 107 ILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGS 186 (277)
T ss_pred EEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEecc
Confidence 7899999986421 1234455677788899999999999998653211 1 1234677777642
Q ss_pred CCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHH
Q 004301 336 LDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAV 415 (762)
Q Consensus 336 ~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~ 415 (762)
.+.
T Consensus 187 ~~~----------------------------------------------------------------------------- 189 (277)
T cd04843 187 STT----------------------------------------------------------------------------- 189 (277)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 111
Q ss_pred HHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 416 VKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 416 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
...++.||++|+..
T Consensus 190 ------------------------------------------------------------------~~~~~~fSn~G~~v 203 (277)
T cd04843 190 ------------------------------------------------------------------GHTRLAFSNYGSRV 203 (277)
T ss_pred ------------------------------------------------------------------CCccccccCCCCcc
Confidence 01378999999976
Q ss_pred CCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----h-CCCCCHHHHHHHH
Q 004301 496 ITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----A-HPEWSPAAIRSAL 570 (762)
Q Consensus 496 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~~sp~~ik~~L 570 (762)
||+|||++|+++.+...... .......|..++|||||||||||++|||++ + +|+|+|+|||++|
T Consensus 204 --------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L 272 (277)
T cd04843 204 --------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELL 272 (277)
T ss_pred --------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 99999999999987642110 011112457899999999999999999975 3 4999999999999
Q ss_pred Hhccc
Q 004301 571 MTTAY 575 (762)
Q Consensus 571 ~~TA~ 575 (762)
+.|++
T Consensus 273 ~~t~~ 277 (277)
T cd04843 273 TATGT 277 (277)
T ss_pred HhcCC
Confidence 99974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-40 Score=347.55 Aligned_cols=246 Identities=31% Similarity=0.497 Sum_probs=190.2
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccc---cccCCCCCCCCCCceeeeeeeccc---cccccCCCCCCCCCCC
Q 004301 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGA---CETGTNFNASNCNRKLIGARYFAR---GYEATLGPIDESKESK 203 (762)
Q Consensus 130 ~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~---~~~~~~~~~~~~~~~~ 203 (762)
+||+|||||||||++||+|.++ .|... +..+.+.. . ..|.+ +++. .....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~-------~~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD----G------NGYVDDIYGWNF-------VNNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC----C------CCcccCCCcccc-------cCCCC
Confidence 6999999999999999999874 23211 11111100 0 00111 1111 11233
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
++.|..+|||||||||+|...+... +.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G 129 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWG 129 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5678899999999999998643322 47999999999999998876 78889999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC---CCccC--CCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 283 GGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS---YSLSN--VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
.... ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 130 ~~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~--------------------- 185 (259)
T cd07473 130 GGGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS--------------------- 185 (259)
T ss_pred CCCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC---------------------
Confidence 8543 45677777799999999999999998763 23343 3578888887432
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.+.++.||++||.. ||+.|||.++++..+
T Consensus 186 --------------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~ 214 (259)
T cd07473 186 --------------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSP 214 (259)
T ss_pred --------------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccC
Confidence 12456799999864 599999999999765
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
.. .|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 215 ~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 215 GG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 54 7999999999999999999999999999999999999999984
No 30
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.8e-40 Score=353.08 Aligned_cols=253 Identities=27% Similarity=0.318 Sum_probs=175.6
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
.|+|||||||||++||+|+++-.. ..+.+.....+.........+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999853100 000010000000000011111234567899
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCC-CHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGC-FSSDILAAIEQAIDDNVNVLSMSLGGGTSDY- 288 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~- 288 (762)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...++++||+||++++++|||||||......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998632 159999999999999988764 8889999999999999999999999754211
Q ss_pred -------cccHHHHHHHHHHhcCCEEEEecCCCCCCCCC----------------------ccCCCCceEEecCCCCCCc
Q 004301 289 -------YKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS----------------------LSNVAPWITTVGAGTLDRD 339 (762)
Q Consensus 289 -------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVgA~~~~~~ 339 (762)
..+.+..++..+.++|++||+||||+|..... .+...+++|+|||+
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~----- 197 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT----- 197 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee-----
Confidence 12346667777889999999999999965421 12223344444432
Q ss_pred cceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHc
Q 004301 340 FPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAA 419 (762)
Q Consensus 340 ~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~ 419 (762)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCC
Q 004301 420 GGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499 (762)
Q Consensus 420 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 499 (762)
...+.++.||++|+...
T Consensus 198 ------------------------------------------------------------~~~~~~~~~S~~g~~~~--- 214 (294)
T cd07482 198 ------------------------------------------------------------DNNGNLSSFSNYGNSRI--- 214 (294)
T ss_pred ------------------------------------------------------------CCCCCcCccccCCCCcc---
Confidence 22236678999987654
Q ss_pred CCCCcEEecCCcEEecccCCCC---CCC------CCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCH-HHHHHH
Q 004301 500 LLKPDMIAPGVNILAGWSGAVG---PTG------LATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP-AAIRSA 569 (762)
Q Consensus 500 ~lKPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp-~~ik~~ 569 (762)
|++|||+++......... ... .........|..++|||||||+|||++|||+|++|.+++ .|||++
T Consensus 215 ----~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~ 290 (294)
T cd07482 215 ----DLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRI 290 (294)
T ss_pred ----eEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHH
Confidence 999999998532211100 000 001123357899999999999999999999999999999 999999
Q ss_pred HHhc
Q 004301 570 LMTT 573 (762)
Q Consensus 570 L~~T 573 (762)
|++|
T Consensus 291 L~~T 294 (294)
T cd07482 291 LYNT 294 (294)
T ss_pred HhhC
Confidence 9986
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=5.6e-40 Score=337.65 Aligned_cols=226 Identities=36% Similarity=0.503 Sum_probs=185.7
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+|||||+||+++||+|.+. ++..++|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999753 11111121110 023567889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCc
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYY 289 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 289 (762)
|||||||+|++..... .+.|+||+|+|+.+|+++..+ +...+++++++++++.|++|||||||... .
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~ 109 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---D 109 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---C
Confidence 9999999999975332 248999999999999998776 67789999999999999999999999853 2
Q ss_pred ccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc--cCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCce
Q 004301 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL--SNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKL 367 (762)
Q Consensus 290 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~ 367 (762)
...+..++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------ 159 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------ 159 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------
Confidence 34556666788999999999999999876654 7888999999985321
Q ss_pred eeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEE
Q 004301 368 LPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATA 447 (762)
Q Consensus 368 ~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 447 (762)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCC
Q 004301 448 VGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLAT 527 (762)
Q Consensus 448 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 527 (762)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 -----------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------- 188 (229)
T cd07477 160 -----------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------- 188 (229)
T ss_pred -----------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC--------
Confidence 1456799999865 9999999999988764
Q ss_pred CCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 528 DSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 528 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.|..++|||||||+|||++|||+|++|+++|.+||++|++|
T Consensus 189 -----~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-40 Score=341.89 Aligned_cols=156 Identities=23% Similarity=0.278 Sum_probs=118.4
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
+++|+|||||||||++||+|.++ ++..++|...... .........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~------~~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD------GNKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC------cccCCCCCCCC
Confidence 78999999999999999999753 1111222211100 00011123578
Q ss_pred CCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-------CCHHHHHHHHHHHHhCCCcEEEEcc
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-------CFSSDILAAIEQAIDDNVNVLSMSL 281 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~Sl 281 (762)
.||||||||||+ |+||+|+|+++|+++..+ ++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999994 789999999999998653 3567899999999999999999999
Q ss_pred CCCCCCC---cccHHHHHHHHHHhcCCEEEEecCCCCCCCC-C--ccCCCCceEEecCCC
Q 004301 282 GGGTSDY---YKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-S--LSNVAPWITTVGAGT 335 (762)
Q Consensus 282 G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVgA~~ 335 (762)
|...... ....+..++.+|.++|++||+||||+|.... . .+...|++|+|||.+
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9864321 2567788888999999999999999998764 3 345678999999854
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=6.2e-41 Score=355.85 Aligned_cols=274 Identities=35% Similarity=0.473 Sum_probs=207.4
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004301 133 IVGVLDTGVWPESKSFD-DTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGH 211 (762)
Q Consensus 133 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 211 (762)
+|||||||||++||+|. ++ + ...++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 011233344444332 112345678899
Q ss_pred hhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHH-hCCCcEEEEccCCC--CC-C
Q 004301 212 GTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAI-DDNVNVLSMSLGGG--TS-D 287 (762)
Q Consensus 212 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~--~~-~ 287 (762)
||||||+|+|.. . .+. ....|+||+|+|+.+|+++..+....+++++|++++ +++++|||||||.. .. .
T Consensus 49 GT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~ 121 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP 121 (282)
T ss_dssp HHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS
T ss_pred cchhhhhccccc-c-ccc-----cccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc
Confidence 999999999986 2 221 123899999999999998776677788999999999 89999999999872 21 2
Q ss_pred CcccHHHHHHHHHHhcCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCC
Q 004301 288 YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLP 364 (762)
Q Consensus 288 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~ 364 (762)
...+.+..++..+.++|+++|+||||+|.... ..++..+++|+||+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~---------------------------- 173 (282)
T PF00082_consen 122 SYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN---------------------------- 173 (282)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET----------------------------
T ss_pred ccccccccccccccccCcceeecccccccccccccccccccccccccccccc----------------------------
Confidence 23344566666889999999999999987765 35566688888887321
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccc
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLP 444 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 444 (762)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCC
Q 004301 445 ATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTG 524 (762)
Q Consensus 445 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 524 (762)
.+.++.||++|+... .+++||||+|||.+|+++++....
T Consensus 174 -------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~--- 212 (282)
T PF00082_consen 174 -------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR--- 212 (282)
T ss_dssp -------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES---
T ss_pred -------------------------------------ccccccccccccccc-cccccccccccccccccccccccc---
Confidence 114588999976542 389999999999999988876421
Q ss_pred CCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcC
Q 004301 525 LATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604 (762)
Q Consensus 525 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd 604 (762)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||+++.... .......||||++|
T Consensus 213 -------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in 276 (282)
T PF00082_consen 213 -------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLIN 276 (282)
T ss_dssp -------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-
T ss_pred -------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhC
Confidence 25889999999999999999999999999999999999999999986211 22344578999999
Q ss_pred ccccCC
Q 004301 605 PVSALN 610 (762)
Q Consensus 605 ~~~A~~ 610 (762)
+.+|++
T Consensus 277 ~~~a~~ 282 (282)
T PF00082_consen 277 AEKALN 282 (282)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999874
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-39 Score=328.44 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=172.9
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+|||||||||++||+|.++-.. .+.+..+. .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~~--------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDLE--------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------cccccccc--------cccCCCCCCCCCC
Confidence 799999999999999999864110 00010000 0011223567889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCc
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYY 289 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 289 (762)
|||||||||++ .+|+++|+.+|+++..+ +...++++||+|++++|++|||||||..... .
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~ 106 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-D 106 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-c
Confidence 99999999975 36999999999998776 7888899999999999999999999986532 2
Q ss_pred ccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceee
Q 004301 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLP 369 (762)
Q Consensus 290 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p 369 (762)
...+..++.++.++|+++|+||||++.... .++..+.+|+|++...++.
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~~------------------------------ 155 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADDP------------------------------ 155 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCCC------------------------------
Confidence 345666777888999999999999987543 3677788999987432110
Q ss_pred EEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEc
Q 004301 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVG 449 (762)
Q Consensus 370 ~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 449 (762)
T Consensus 156 -------------------------------------------------------------------------------- 155 (222)
T cd07492 156 -------------------------------------------------------------------------------- 155 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCC
Q 004301 450 QKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDS 529 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 529 (762)
. +.+++ ++|+.|||.+|+++.+.+
T Consensus 156 -----------------------------------~---~~~~~--------~~~~~apg~~i~~~~~~~---------- 179 (222)
T cd07492 156 -----------------------------------K---SFWYI--------YVEFSADGVDIIAPAPHG---------- 179 (222)
T ss_pred -----------------------------------c---ccccC--------CceEEeCCCCeEeecCCC----------
Confidence 0 11122 349999999999987764
Q ss_pred cccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 530 RRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 530 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 ---~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ---RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.7e-39 Score=347.51 Aligned_cols=248 Identities=21% Similarity=0.198 Sum_probs=180.0
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+++|+||+|+|||||||++||+|.++... ...++|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 356999999999999999999999999999764110 01111221110
Q ss_pred CCCCCCC--CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcE
Q 004301 199 SKESKSP--RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNV 276 (762)
Q Consensus 199 ~~~~~~~--~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 276 (762)
...+ .|..||||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++.+ .++|
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceE
Confidence 0112 2788999999999999853321 13799999999999998764 334455566666554 4699
Q ss_pred EEEccCCCCCCC----cccHHHHHHHHHHh-----cCCEEEEecCCCCCCCCC----ccCCCCceEEecCCCCCCcccee
Q 004301 277 LSMSLGGGTSDY----YKDSVAIGAFAAME-----KGILVSCSAGNAGPSSYS----LSNVAPWITTVGAGTLDRDFPAF 343 (762)
Q Consensus 277 In~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~~~~~~~~~~ 343 (762)
||||||...... .......++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------ 215 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------ 215 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------
Confidence 999999764221 22233444444443 699999999999973221 22456788999884321
Q ss_pred EEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceE
Q 004301 344 VSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLG 423 (762)
Q Consensus 344 ~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g 423 (762)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCC
Q 004301 424 MVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKP 503 (762)
Q Consensus 424 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 503 (762)
+.++.||++|+..
T Consensus 216 -----------------------------------------------------------g~~~~~s~~g~~~-------- 228 (297)
T cd04059 216 -----------------------------------------------------------GVRASYSEVGSSV-------- 228 (297)
T ss_pred -----------------------------------------------------------CCCcCCCCCCCcE--------
Confidence 2567899999987
Q ss_pred cEEecCCc-------EEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 504 DMIAPGVN-------ILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 504 DI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
+++|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 229 ~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 89999987 666655420 126789999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5.6e-38 Score=330.23 Aligned_cols=242 Identities=28% Similarity=0.334 Sum_probs=185.0
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCC
Q 004301 128 SASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRD 207 (762)
Q Consensus 128 ~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 207 (762)
+|+||+|+|||+||+++||+|.+...... .+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc---------cccCCCCCC
Confidence 69999999999999999999986421100 000000 000123557
Q ss_pred CCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 004301 208 DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSMSLGGGT 285 (762)
Q Consensus 208 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 285 (762)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998543 2248999999999999998764 56677889999999999999999999865
Q ss_pred CC------------CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc---------cCCCCceEEecCCCCCCccceeE
Q 004301 286 SD------------YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL---------SNVAPWITTVGAGTLDRDFPAFV 344 (762)
Q Consensus 286 ~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~ 344 (762)
.. .....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------ 189 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------ 189 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------
Confidence 22 1445666777788999999999999998654332 23456788888753322
Q ss_pred EcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEE
Q 004301 345 SLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGM 424 (762)
Q Consensus 345 ~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~ 424 (762)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeec--ccCCCCCCCCCCCCC
Q 004301 425 VLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAA--FSSRGPNSITPELLK 502 (762)
Q Consensus 425 i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~lK 502 (762)
.... ||++|+... .
T Consensus 190 -----------------------------------------------------------~~~~~~~s~~~~~~~-----~ 205 (267)
T cd04848 190 -----------------------------------------------------------TIASYSYSNRCGVAA-----N 205 (267)
T ss_pred -----------------------------------------------------------Ccccccccccchhhh-----h
Confidence 2223 488876542 3
Q ss_pred CcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 503 PDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 503 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
++++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 206 ~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 206 WCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred heeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 479999999999877311 27889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=319.45 Aligned_cols=353 Identities=23% Similarity=0.363 Sum_probs=259.7
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccC-C------CCcEEEEEcceeeEEEEEcC-----HHHHHHHhcCCCeE
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVS-D------SAEILYTYDNVIHGFSTQLT-----REEAESLEQRPGIL 95 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~-~------~~~v~~~y~~~~~g~s~~~~-----~~~~~~L~~~p~V~ 95 (762)
.+.+|||.|+.... ...++..+++.|+.-. . ....-..|...|.-+-++-. .-++++|..+|.|+
T Consensus 48 ve~EyIv~F~~y~~---Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKP---AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ecceeEEEeccccc---chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 36789999997653 2455666666666433 1 22233455555655555433 23588999999999
Q ss_pred EEEeCceeccCC------------CC------------------CCcccCCc------------CCCCCCcCCCCCCCcE
Q 004301 96 SVLPELKYELHT------------TR------------------SPEFLGLD------------KSANLFPTSGSASEVI 133 (762)
Q Consensus 96 ~v~~~~~~~~~~------------~~------------------s~~~~g~~------------~~~~~~~~~~~G~Gv~ 133 (762)
.|.|.+.+..-. +. .+..|+-. .++-+|.+|+||++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 999987654310 00 00001100 0234899999999999
Q ss_pred EEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChh
Q 004301 134 VGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGT 213 (762)
Q Consensus 134 VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 213 (762)
|||.|||+.-+||.|+.-- -...| .+. ..-.|.-||||
T Consensus 205 vAiFDTGl~~~HPHFrnvK---ERTNW-------------------------TNE--------------~tLdD~lgHGT 242 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNVK---ERTNW-------------------------TNE--------------DTLDDNLGHGT 242 (1033)
T ss_pred EEEeecccccCCccccchh---hhcCC-------------------------cCc--------------cccccCcccce
Confidence 9999999999999997410 00011 110 12456789999
Q ss_pred hHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCcccH
Q 004301 214 HTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDS 292 (762)
Q Consensus 214 hVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~ 292 (762)
.|||+|||... ..|.||+++|++.|||.+.- .+.+..++|++||+....||+|+|+|++ .+.+.+
T Consensus 243 FVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~P 308 (1033)
T KOG4266|consen 243 FVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLP 308 (1033)
T ss_pred eEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccch
Confidence 99999999741 37999999999999998766 7889999999999999999999999996 445556
Q ss_pred HHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCC--ceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeE
Q 004301 293 VAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAP--WITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPF 370 (762)
Q Consensus 293 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~ 370 (762)
+-..+......+|++|.|+||+|+-..+..+.+. .||.||.
T Consensus 309 FVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------------- 351 (1033)
T KOG4266|consen 309 FVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------------- 351 (1033)
T ss_pred HHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------------------
Confidence 6666668889999999999999998777665432 3444442
Q ss_pred EEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEch
Q 004301 371 VYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQ 450 (762)
Q Consensus 371 v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 450 (762)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCC----CCCCCCCcEEecCCcEEecccCCCCCCCCC
Q 004301 451 KFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSI----TPELLKPDMIAPGVNILAGWSGAVGPTGLA 526 (762)
Q Consensus 451 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 526 (762)
.+..+.+|.|||||-+.. ..|++||||++.|.+|..+....
T Consensus 352 ----------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~------- 396 (1033)
T KOG4266|consen 352 ----------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST------- 396 (1033)
T ss_pred ----------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc-------
Confidence 123348899999996542 24999999999999987764432
Q ss_pred CCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCC
Q 004301 527 TDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGH 602 (762)
Q Consensus 527 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 602 (762)
+-..+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++. ..-++||+|+
T Consensus 397 ------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQGaGk 457 (1033)
T KOG4266|consen 397 ------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQGAGK 457 (1033)
T ss_pred ------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------CchhhccCcc
Confidence 677899999999999999999966 34456899999999999999863 2346999999
Q ss_pred cCccccCC
Q 004301 603 VNPVSALN 610 (762)
Q Consensus 603 vd~~~A~~ 610 (762)
+|+.++.+
T Consensus 458 ldLL~syq 465 (1033)
T KOG4266|consen 458 LDLLESYQ 465 (1033)
T ss_pred hhHHHHHH
Confidence 99998876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=304.56 Aligned_cols=238 Identities=26% Similarity=0.307 Sum_probs=180.6
Q ss_pred CCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecC-C--CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 004301 208 DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG-G--CFSSDILAAIEQAIDDNVNVLSMSLGGG 284 (762)
Q Consensus 208 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 284 (762)
..-|||||||||+|+.....- ..||||+|+|+++++-+.. | .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 355999999999999755422 3799999999999996643 2 4556788999999999999999999986
Q ss_pred C-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccC---CCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecC
Q 004301 285 T-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSN---VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKG 360 (762)
Q Consensus 285 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~ 360 (762)
. .+.....++..-..+.++|+++|+||||+||.-.++++ ....+|.|||--......+
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a------------------ 442 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA------------------ 442 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh------------------
Confidence 5 44455566655555568999999999999999877653 4457888887321111000
Q ss_pred CCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccC
Q 004301 361 DGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADA 440 (762)
Q Consensus 361 ~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 440 (762)
.|.
T Consensus 443 ------~y~----------------------------------------------------------------------- 445 (1304)
T KOG1114|consen 443 ------EYS----------------------------------------------------------------------- 445 (1304)
T ss_pred ------hhh-----------------------------------------------------------------------
Confidence 000
Q ss_pred cccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCC
Q 004301 441 HLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAV 520 (762)
Q Consensus 441 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 520 (762)
++ ..-......+|||||+.| |.+--.|+|||+.|-+ .|...
T Consensus 446 ---------------~~---------------------e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAs-VP~~t 486 (1304)
T KOG1114|consen 446 ---------------VR---------------------EPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIAS-VPQYT 486 (1304)
T ss_pred ---------------hh---------------------ccCCCCccccccCCCCcC--CCcceEEecCCccccC-Cchhh
Confidence 00 011225678999999998 8888899999999855 33221
Q ss_pred CCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCC
Q 004301 521 GPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPF 596 (762)
Q Consensus 521 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 596 (762)
...-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++ -.++
T Consensus 487 ----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~f 543 (1304)
T KOG1114|consen 487 ----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSF 543 (1304)
T ss_pred ----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchh
Confidence 12567899999999999999999855 57789999999999999999853 2457
Q ss_pred CCCCCCcCccccCC
Q 004301 597 DHGAGHVNPVSALN 610 (762)
Q Consensus 597 ~~G~G~vd~~~A~~ 610 (762)
.||.|++++.+|.+
T Consensus 544 aqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 544 AQGQGMLQVDKAYE 557 (1304)
T ss_pred ccCcceeehhHHHH
Confidence 99999999999987
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-32 Score=283.82 Aligned_cols=194 Identities=22% Similarity=0.196 Sum_probs=141.7
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHH--HhCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQA--IDDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 282 (762)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 557899999999999997 4677999998765521 2334466778888 5679999999999
Q ss_pred CCCCCC------cccHHHHHHHHHHhc-CCEEEEecCCCCCCC-----CCccCCCCceEEecCCCCCCccceeEEcCCCc
Q 004301 283 GGTSDY------YKDSVAIGAFAAMEK-GILVSCSAGNAGPSS-----YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQ 350 (762)
Q Consensus 283 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 350 (762)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 865321 223456666666666 999999999999853 234556788999998543221
Q ss_pred EEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecC
Q 004301 351 NYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTE 430 (762)
Q Consensus 351 ~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 430 (762)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC
Q 004301 431 SNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 510 (762)
....+.||++|-.....+..||||+|||+
T Consensus 164 ---------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~ 192 (247)
T cd07488 164 ---------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGS 192 (247)
T ss_pred ---------------------------------------------------cceecccccccCCCCCCCCceeEEEEeee
Confidence 00234566654222223788999999999
Q ss_pred cEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 004301 511 NILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP------AAIRSALMTT 573 (762)
Q Consensus 511 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp------~~ik~~L~~T 573 (762)
+|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+.|
T Consensus 193 ~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 193 NYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9998 322 6889999999999999999999999887764 4566666655
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=8e-31 Score=270.41 Aligned_cols=195 Identities=38% Similarity=0.538 Sum_probs=157.1
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHH-hCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAI-DDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~SlG 282 (762)
..+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g 110 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG 110 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCC
Confidence 56788999999999999854322 16999999999999987765 67788999999999 899999999999
Q ss_pred CCCCCCcccHHHHHHHHHHhc-CCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeee
Q 004301 283 GGTSDYYKDSVAIGAFAAMEK-GILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLY 358 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~ 358 (762)
..... ....+...+.++.++ |+++|+||||++.... ..++..+++|+||+.+.+..
T Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 170 (241)
T cd00306 111 GPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT------------------- 170 (241)
T ss_pred CCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC-------------------
Confidence 86533 344566666677777 9999999999998876 47788999999998643221
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccc
Q 004301 359 KGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438 (762)
Q Consensus 359 ~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 438 (762)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeee-cccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVA-AFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.. .++++| .|||+.|||..+.....
T Consensus 171 ----------------------------------------------~~~~~~~~~--------~~~~~~apg~~~~~~~~ 196 (241)
T cd00306 171 ----------------------------------------------PASPSSNGG--------AGVDIAAPGGDILSSPT 196 (241)
T ss_pred ----------------------------------------------ccCCcCCCC--------CCceEEeCcCCccCccc
Confidence 11 334444 36699999999987511
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.. ...+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 197 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 197 TG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11 1378999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-23 Score=239.50 Aligned_cols=272 Identities=34% Similarity=0.464 Sum_probs=195.7
Q ss_pred CCCCcC--CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCC
Q 004301 120 ANLFPT--SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPID 197 (762)
Q Consensus 120 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 197 (762)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|....
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457777 99999999999999999999999864110 01122111
Q ss_pred CCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecC-C-CCHHHHHHHHHHHHhCC--
Q 004301 198 ESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG-G-CFSSDILAAIEQAIDDN-- 273 (762)
Q Consensus 198 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g-- 273 (762)
......|.++|||||+|++++....+ .....|+||+++++.+|++... | ....+++.+|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 244 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGP 244 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCC
Confidence 00024688999999999999842111 1124799999999999999866 5 67778899999999999
Q ss_pred CcEEEEccCCCCCCCcccHHHHHHHHHHhcC-CEEEEecCCCCCCCC----CccCCC--CceEEecCCCCCCccceeEEc
Q 004301 274 VNVLSMSLGGGTSDYYKDSVAIGAFAAMEKG-ILVSCSAGNAGPSSY----SLSNVA--PWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 274 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVgA~~~~~~~~~~~~~ 346 (762)
+++||||+|..........+..++..++..| +++|+|+||.+.... .++... +.+++|+|.+.
T Consensus 245 ~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------- 314 (508)
T COG1404 245 ADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------- 314 (508)
T ss_pred CcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------
Confidence 9999999998522233345556666777777 999999999987752 122222 25555555311
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
.+.++.||++|+.. +.+++
T Consensus 315 -------------------------------------------------------~~~~~~~s~~g~~~------~~~~~ 333 (508)
T COG1404 315 -------------------------------------------------------SDTVASFSNDGSPT------GVDIA 333 (508)
T ss_pred -------------------------------------------------------CCccccccccCCCC------Cccee
Confidence 12678899999752 12999
Q ss_pred ecCCcEEe-----cccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccccC
Q 004301 507 APGVNILA-----GWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP-EWSPAAIRSALMTTAYVSYKN 580 (762)
Q Consensus 507 APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~~sp~~ik~~L~~TA~~~~~~ 580 (762)
|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++...
T Consensus 334 apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (508)
T COG1404 334 APGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT--- 399 (508)
T ss_pred CCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc---
Confidence 99999988 444431 1499999999999999999999999999 899999999988888730
Q ss_pred CcccccccCCCCCCCCCCCCCCcCccccCC
Q 004301 581 GQKLQDIATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 581 g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
........++.|..+...+..
T Consensus 400 ---------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 ---------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ---------cCCccccccccCccccccccc
Confidence 111223366666666555443
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.4e-22 Score=202.70 Aligned_cols=170 Identities=16% Similarity=0.253 Sum_probs=107.4
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..|++||+|+++|+|.||||-|||+..+ |+ --.+++|..+. +
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssnd---------p 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSND---------P 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccCC---------C
Confidence 45899999999999999999999999999742 11 11223343321 1
Q ss_pred CCCCCCCC--CCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcE
Q 004301 200 KESKSPRD--DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNV 276 (762)
Q Consensus 200 ~~~~~~~D--~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dV 276 (762)
.+++--.| .+.|||.|||-+++...++. .| .|||.+.++..+|+++. -+..|+++|-..-.+ ...+|
T Consensus 197 fpyprytddwfnshgtrcagev~aardngi--cg------vgvaydskvagirmldq--pymtdlieansmghep~kihi 266 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHI 266 (629)
T ss_pred CCCCcccchhhhccCccccceeeeeccCCc--ee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEE
Confidence 11111122 58999999999888765543 33 69999999999999864 456666665332222 24789
Q ss_pred EEEccCCCCCC-Ccc---cHHHHHHHHHHh-----cCCEEEEecCCCCCCC-CCccC--CCCceEEecC
Q 004301 277 LSMSLGGGTSD-YYK---DSVAIGAFAAME-----KGILVSCSAGNAGPSS-YSLSN--VAPWITTVGA 333 (762)
Q Consensus 277 In~SlG~~~~~-~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~-~~~~~--~~p~vitVgA 333 (762)
.+-|||..... ..+ ++..+|+-+-+. .|-+.|.|+|..|... +...+ .+-|.|++-+
T Consensus 267 ysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 267 YSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred EecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 99999975421 111 222222223332 4679999999887542 22222 3345555543
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.75 E-value=1.3e-17 Score=182.29 Aligned_cols=101 Identities=27% Similarity=0.310 Sum_probs=81.8
Q ss_pred ceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCC---CcccHHHHHHHHHHhcCCEEEE
Q 004301 236 TARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDD---NVNVLSMSLGGGTSD---YYKDSVAIGAFAAMEKGILVSC 309 (762)
Q Consensus 236 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 309 (762)
.+.||||+|+|+.|+++++. ..+++.++.+++++ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45678888888887 999999999986532 2335677777889999999999
Q ss_pred ecCCCCCCCC-----------CccCCCCceEEecCCCCCCc
Q 004301 310 SAGNAGPSSY-----------SLSNVAPWITTVGAGTLDRD 339 (762)
Q Consensus 310 AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~~ 339 (762)
||||+|.... .+++..|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35688999999999876554
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.35 E-value=1.2e-11 Score=114.66 Aligned_cols=123 Identities=52% Similarity=0.825 Sum_probs=99.8
Q ss_pred EEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc-hhhhHHHHHHHcCce
Q 004301 344 VSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN-ARVQKGAVVKAAGGL 422 (762)
Q Consensus 344 ~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~-~~~~~~~~~~~~Ga~ 422 (762)
+.++||+++.|++++++.. ..+++++............|.+..+...+++||||+|+++.+ .+.++..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6789999999999997553 456777644433344557899888888999999999999999 899999999999999
Q ss_pred EEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEE
Q 004301 423 GMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVT 469 (762)
Q Consensus 423 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 469 (762)
|+|++++.............+|.+.|+.++|+.|++|++++..++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999886543333333467999999999999999999988776554
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.29 E-value=2.3e-11 Score=115.04 Aligned_cols=117 Identities=32% Similarity=0.395 Sum_probs=92.8
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccccc-Cccc
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVAD-AHLL 443 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~ 443 (762)
....++++.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+.......... ...+
T Consensus 25 ~~~~~lv~~g~---------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 25 GKTYELVDAGL---------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CcEEEEEEccC---------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 45788888643 3344455678999999999999999999999999999999999986543222222 3578
Q ss_pred ceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 444 PATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 444 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
|++.|+..+|+.|++++++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999988 66677776655 45778899999999973
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.90 E-value=4.1e-09 Score=89.57 Aligned_cols=76 Identities=43% Similarity=0.720 Sum_probs=58.1
Q ss_pred eEEEEeCCCCCCcc-hhhhHHHHHHhhcc-----cCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceec
Q 004301 31 TYIIHMAKSEMPAS-FEHHTHWYESSLKS-----VSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYE 104 (762)
Q Consensus 31 ~yIV~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~ 104 (762)
+|||.|++...... ...+.+++.+++.+ .....++.+.|...|+||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999876554 66677777755443 2247899999999999999999999999999999999999999987
Q ss_pred cC
Q 004301 105 LH 106 (762)
Q Consensus 105 ~~ 106 (762)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.74 E-value=1.5e-07 Score=86.45 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=76.3
Q ss_pred eeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc--c-c-c-cCc
Q 004301 367 LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE--L-V-A-DAH 441 (762)
Q Consensus 367 ~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~-~-~-~~~ 441 (762)
+-++++... ...+.|.+..+...+++|||+||.|+.|.+.+|..+++++||.++|++|+...... . . . ...
T Consensus 18 ~~~lv~~~~----~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP----ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC----CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 456666432 23478988877777899999999999999999999999999999999998653211 1 1 1 345
Q ss_pred ccceEEEchhhHHHHHHHHhcCCCcE
Q 004301 442 LLPATAVGQKFGDAIKSYLVSDPKPT 467 (762)
Q Consensus 442 ~~p~~~i~~~~~~~l~~~~~~~~~~~ 467 (762)
.+|+++|+..+|+.|+.++..+.+.+
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999998776543
No 48
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.73 E-value=7.6e-08 Score=87.33 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-cc---ccc----cCcccceEEEchhhH
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EE---LVA----DAHLLPATAVGQKFG 453 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~---~~~----~~~~~p~~~i~~~~~ 453 (762)
.+.|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .. ... ....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467986443 567999999999999999999999999999999999976431 11 111 235799999999999
Q ss_pred HHHHHHHhcCCCcEEEEE
Q 004301 454 DAIKSYLVSDPKPTVTIL 471 (762)
Q Consensus 454 ~~l~~~~~~~~~~~~~i~ 471 (762)
+.|++.+..+..+++.+.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999998887766553
No 49
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.70 E-value=8.5e-08 Score=89.48 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=72.6
Q ss_pred CCCcccCCCC--CccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCc-cc---cccCcccceEEEchhhHH
Q 004301 381 NGNLCMMDTL--IPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGE-EL---VADAHLLPATAVGQKFGD 454 (762)
Q Consensus 381 ~~~~c~~~~~--~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~---~~~~~~~p~~~i~~~~~~ 454 (762)
..+.|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+. .. ..+...+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4567988776 56789999999999999999999999999999999999876221 11 122347899999999999
Q ss_pred HHHHHHhcCCCcEEE
Q 004301 455 AIKSYLVSDPKPTVT 469 (762)
Q Consensus 455 ~l~~~~~~~~~~~~~ 469 (762)
.|+.++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887765544
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=7.3e-08 Score=86.90 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=73.1
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc--cc--ccCc
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE--LV--ADAH 441 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~ 441 (762)
..+|++... ....|....+.+.+++|+|+|++||.|+|.+|..+++++||.++|++|+...... .. ....
T Consensus 20 ~~~~~~~~~------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLT------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCC------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 346666643 3467999888888999999999999999999999999999999999998653111 11 1345
Q ss_pred ccceEEEchhhHHHHHHHHhc
Q 004301 442 LLPATAVGQKFGDAIKSYLVS 462 (762)
Q Consensus 442 ~~p~~~i~~~~~~~l~~~~~~ 462 (762)
.||+++|+.++|+.|.+.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999888763
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.66 E-value=5.3e-08 Score=86.24 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCC----CCccccccCcccceEEEchhhHHHHH
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTES----NGEELVADAHLLPATAVGQKFGDAIK 457 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~~~~l~ 457 (762)
...|.+..+...+++||||||.||.|.+.+|..+++++||.|+|++|... ...........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 35577778888999999999999999999999999999999999999211 12223344688999999999999999
Q ss_pred HHH
Q 004301 458 SYL 460 (762)
Q Consensus 458 ~~~ 460 (762)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 885
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.64 E-value=1.8e-07 Score=85.49 Aligned_cols=87 Identities=30% Similarity=0.372 Sum_probs=70.1
Q ss_pred CCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-cc---ccCcccceEEEchhhHHHH
Q 004301 381 NGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-LV---ADAHLLPATAVGQKFGDAI 456 (762)
Q Consensus 381 ~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~---~~~~~~p~~~i~~~~~~~l 456 (762)
..+.|.+..+. .+++|||+||.|+.|.+.+|..+++++||.|+|++|+...... .. .....+|+++|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679887774 4599999999999999999999999999999999988654211 11 1235799999999999999
Q ss_pred HHHHhcCCCcEE
Q 004301 457 KSYLVSDPKPTV 468 (762)
Q Consensus 457 ~~~~~~~~~~~~ 468 (762)
+.|++.+.+.++
T Consensus 105 ~~~l~~g~~v~v 116 (118)
T cd04818 105 KAALAAGGTVTV 116 (118)
T ss_pred HHHHhcCCcEEE
Confidence 999987765443
No 53
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.5e-07 Score=104.03 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=99.8
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+...|..+++|+++.|+|.|+|+...||+.... .-..+..++.... +.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------ND 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CC
Confidence 466999999999999999999999999999742 1112222222221 12
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVI 277 (762)
+.+..+......|||-||+-.+...++..- ..|+++++++..+|++.. ..++...+...... .-+++-
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~ 138 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIY 138 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee---ecccceecccccCCCCCceee
Confidence 222223344689999999999988633222 269999999999999853 12233333322222 347899
Q ss_pred EEccCCCCCC-Cc---ccHHHHHHHH-----HHhcCCEEEEecCCCCCCCC
Q 004301 278 SMSLGGGTSD-YY---KDSVAIGAFA-----AMEKGILVSCSAGNAGPSSY 319 (762)
Q Consensus 278 n~SlG~~~~~-~~---~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 319 (762)
+.|||..... .. ......+... ...+|-+.|+|.||.|....
T Consensus 139 scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 139 SCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9999975421 11 1112222222 23578899999999886554
No 54
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.61 E-value=2e-07 Score=85.96 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=68.4
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC------cc-cc-----ccCcccceEEEc
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG------EE-LV-----ADAHLLPATAVG 449 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~------~~-~~-----~~~~~~p~~~i~ 449 (762)
.+.|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... .. .. .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 567899999999999999999999999999999999875431 11 11 124578999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 004301 450 QKFGDAIKSYLVSDPKPTV 468 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~ 468 (762)
..+|+.|+..+..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987665443
No 55
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.57 E-value=8.3e-07 Score=81.93 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=72.5
Q ss_pred eeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-ccccCcccceE
Q 004301 368 LPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-LVADAHLLPAT 446 (762)
Q Consensus 368 ~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 446 (762)
+|++.... ......+.|.+...+..+++|+|+|++||+|.|.+|..+++++||.++|++|+...... ...+...+|.+
T Consensus 28 ~p~~~~~~-~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSL-DTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeec-ccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 66555432 23345678987655556899999999999999999999999999999999988654222 12223345666
Q ss_pred EEchhhHHHHHHHHhcCCCcE
Q 004301 447 AVGQKFGDAIKSYLVSDPKPT 467 (762)
Q Consensus 447 ~i~~~~~~~l~~~~~~~~~~~ 467 (762)
.+ ..+|+.|++.+..+...+
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEE
Confidence 66 999999999998765443
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.55 E-value=3.6e-07 Score=83.94 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=68.8
Q ss_pred CcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc----ccccCcccceEEEchhhHHHHHH
Q 004301 383 NLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE----LVADAHLLPATAVGQKFGDAIKS 458 (762)
Q Consensus 383 ~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~~~p~~~i~~~~~~~l~~ 458 (762)
..|.+..+ +.+++|||+|++|+.|.|.+|..+++++||.|+|++|+...+.. ...+...+|++.|+.++|+.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46876555 35799999999999999999999999999999999998632211 11234679999999999999999
Q ss_pred HHhcCCCcEE
Q 004301 459 YLVSDPKPTV 468 (762)
Q Consensus 459 ~~~~~~~~~~ 468 (762)
.+.++.+.++
T Consensus 111 ~l~~g~~v~~ 120 (122)
T cd02130 111 ALANGGEVSA 120 (122)
T ss_pred HHhcCCcEEE
Confidence 9988876554
No 57
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.52 E-value=8.9e-07 Score=81.47 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=67.4
Q ss_pred CCcccCCCCC--cc----ccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccc-----------cccCcccc
Q 004301 382 GNLCMMDTLI--PE----KVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEEL-----------VADAHLLP 444 (762)
Q Consensus 382 ~~~c~~~~~~--~~----~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----------~~~~~~~p 444 (762)
.+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+....... ..+...||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578765442 22 3788999999999999999999999999999999986532111 11234699
Q ss_pred eEEEchhhHHHHHHHHhcCCCcEE
Q 004301 445 ATAVGQKFGDAIKSYLVSDPKPTV 468 (762)
Q Consensus 445 ~~~i~~~~~~~l~~~~~~~~~~~~ 468 (762)
+++|+..+|+.|+..+..+...++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999988765544
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.51 E-value=4.5e-07 Score=83.70 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCcccCCC--CCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-ccc-c----ccCcccceEEEchhhH
Q 004301 382 GNLCMMDT--LIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EEL-V----ADAHLLPATAVGQKFG 453 (762)
Q Consensus 382 ~~~c~~~~--~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~-~----~~~~~~p~~~i~~~~~ 453 (762)
...|.+.. +...+++||||||.|+.|.+.+|..+++++||.|+|++++.... ... . .....+|++.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 67788999999999999999999999999999999999986532 111 1 1345799999999999
Q ss_pred HHHHHHHhcCCCcE
Q 004301 454 DAIKSYLVSDPKPT 467 (762)
Q Consensus 454 ~~l~~~~~~~~~~~ 467 (762)
+.|+.++.++.+.+
T Consensus 110 ~~l~~~~~~~~~v~ 123 (126)
T cd00538 110 EALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHhcCCceE
Confidence 99999998765433
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.50 E-value=5.8e-07 Score=84.35 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc-----c-cCcccceEEEchhhHHH
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV-----A-DAHLLPATAVGQKFGDA 455 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-----~-~~~~~p~~~i~~~~~~~ 455 (762)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+........ . ....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798754 479999999999999999999999999999999998764321111 1 13579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 004301 456 IKSYLVSDPKPTV 468 (762)
Q Consensus 456 l~~~~~~~~~~~~ 468 (762)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
No 60
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.47 E-value=6e-07 Score=83.40 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=61.2
Q ss_pred CCCccccCCcEEEEeCCCch-----hhhHHHHHHHcCceEEEEeecCC-CC-c-ccccc---CcccceEEEchhhHHHHH
Q 004301 389 TLIPEKVAGKIVMCDRGVNA-----RVQKGAVVKAAGGLGMVLANTES-NG-E-ELVAD---AHLLPATAVGQKFGDAIK 457 (762)
Q Consensus 389 ~~~~~~~~g~iv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~-~~-~-~~~~~---~~~~p~~~i~~~~~~~l~ 457 (762)
.+.+.+++|||+|++||.|. |.+|.++++++||.|+|+||+.. .+ . ..+.+ ...+|++.|++.+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 34456899999999999999 99999999999999999999972 22 1 12222 458999999999999999
Q ss_pred HHHhcC
Q 004301 458 SYLVSD 463 (762)
Q Consensus 458 ~~~~~~ 463 (762)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987543
No 61
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.44 E-value=1.9e-06 Score=77.82 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=57.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEe-ecC-----CCCe-----------EEEEEcCeEEEeecCeeeEEEEEEEEecC---
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFIT-SST-----GPGV-----------KISVEPATLSFTQANEKKSYTVTFTVSSM--- 734 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~-~~~-----~~~~-----------~v~v~p~~~~~~~~~~~~~~~vt~~~~~~--- 734 (762)
...++++||+|.|+ ..+|+++.. ..+ ..|. .++..|.++++ ++|++++|+|+|+.+..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 46999999999999 999999877 210 1121 56677888999 89999999999999642
Q ss_pred CCCCeEEEEEEEEc-Cc-eEEEeEEE
Q 004301 735 PSNTNSFAHLEWSD-GK-YIVGSPIA 758 (762)
Q Consensus 735 ~~~~~~~G~i~~~~-~~-~~v~~P~~ 758 (762)
+.+.+++|+|.+++ .. ..+++||.
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 45789999999995 34 49999985
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.44 E-value=9.1e-07 Score=80.12 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=64.9
Q ss_pred CCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-cc-cc----ccCcccceEEEchhhHH
Q 004301 381 NGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EE-LV----ADAHLLPATAVGQKFGD 454 (762)
Q Consensus 381 ~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-~~----~~~~~~p~~~i~~~~~~ 454 (762)
..+.|.+. +..+++|||+|+.||+|.|.+|..+++++||.++|++|+.... .. .. .....+|+++++..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 45679765 5578999999999999999999999999999999999876532 11 11 22357999999999999
Q ss_pred HHHHHHhc
Q 004301 455 AIKSYLVS 462 (762)
Q Consensus 455 ~l~~~~~~ 462 (762)
+|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988653
No 63
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-06 Score=103.41 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=59.8
Q ss_pred ceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC-----CCCcccHHHHHHHHHHhcCCEEEE
Q 004301 236 TARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNV-NVLSMSLGGGT-----SDYYKDSVAIGAFAAMEKGILVSC 309 (762)
Q Consensus 236 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~ 309 (762)
..+-+||.|+|..|-. .. ........|+......=+ -+|-.||+... .+.+-+.+......|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3468999999998866 22 222223333333222211 33445666532 122334556666688899999999
Q ss_pred ecCCCCCCCC--------CccCCCCceEEecC
Q 004301 310 SAGNAGPSSY--------SLSNVAPWITTVGA 333 (762)
Q Consensus 310 AAGN~g~~~~--------~~~~~~p~vitVgA 333 (762)
|+|.+|.... ..++.+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999986654 34568999999997
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.40 E-value=1.4e-06 Score=83.16 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCcccCCCCCc---cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-ccc-----cCcccceEEEchhh
Q 004301 382 GNLCMMDTLIP---EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-LVA-----DAHLLPATAVGQKF 452 (762)
Q Consensus 382 ~~~c~~~~~~~---~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~-----~~~~~p~~~i~~~~ 452 (762)
.+.|.+....+ ....|+|+|++||.|.|.+|..+++++||.++|++|+...... ... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798776644 7899999999999999999999999999999999998654222 111 13589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004301 453 GDAIKSYLVSDPK 465 (762)
Q Consensus 453 ~~~l~~~~~~~~~ 465 (762)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999887654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.02 E-value=8.5e-05 Score=68.67 Aligned_cols=91 Identities=22% Similarity=0.137 Sum_probs=69.8
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc--hhhhHHHHHHHcCceEEEEeecCCCCccc-----c
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN--ARVQKGAVVKAAGGLGMVLANTESNGEEL-----V 437 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~ 437 (762)
..+.++|+.+... +..+...+++||||++.++.+ .+.+|..+++++||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~---------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYGL---------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCCC---------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 4567888876431 223335679999999999999 88999999999999999999875442211 1
Q ss_pred --ccCcccceEEEchhhHHHHHHHHhcCC
Q 004301 438 --ADAHLLPATAVGQKFGDAIKSYLVSDP 464 (762)
Q Consensus 438 --~~~~~~p~~~i~~~~~~~l~~~~~~~~ 464 (762)
.....+|++.|+.++++.|...++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999987643
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.44 E-value=0.00052 Score=63.99 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=61.4
Q ss_pred CccccCCcEEEEeCCCc------hhhhH-------HHHHHHcCceEEEEeecCC-------CCcccc-ccCcccceEEEc
Q 004301 391 IPEKVAGKIVMCDRGVN------ARVQK-------GAVVKAAGGLGMVLANTES-------NGEELV-ADAHLLPATAVG 449 (762)
Q Consensus 391 ~~~~~~g~iv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~i~ 449 (762)
...+++||||++.++.| .+..+ ...++++||.|+|++|... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45789999999999999 88888 6899999999999998532 222211 223569999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 004301 450 QKFGDAIKSYLVSDPKPTV 468 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~ 468 (762)
.+++..|...++.+...++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999887755443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.78 E-value=0.0038 Score=60.74 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=56.1
Q ss_pred ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-cc-----------------------------c-cc--
Q 004301 392 PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EE-----------------------------L-VA-- 438 (762)
Q Consensus 392 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-----------------------------~-~~-- 438 (762)
..+++|||+|+++|.|.+.+|..+|+++||+|+|+|++.... .. . ..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457999999999999999999999999999999999874110 00 0 00
Q ss_pred -cCcccceEEEchhhHHHHHHHHhc
Q 004301 439 -DAHLLPATAVGQKFGDAIKSYLVS 462 (762)
Q Consensus 439 -~~~~~p~~~i~~~~~~~l~~~~~~ 462 (762)
.-..||+.-|+..+++.|+..+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 124588999999999999998753
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.57 E-value=0.0061 Score=56.95 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=51.2
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc------------------hhhhHHHHHHHcCceEEEEe
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN------------------ARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 427 (762)
...|+|+.+..- ....|....+...+++||||++.++.| .+..|..+++++||.|+|++
T Consensus 20 ~~aelVfvGyGi---~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 20 KDAPLVFVGYGI---KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred cceeeEEecCCc---CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 457888877542 224587778888899999999999877 46789999999999999999
Q ss_pred ecCC
Q 004301 428 NTES 431 (762)
Q Consensus 428 n~~~ 431 (762)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9854
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.46 E-value=0.0077 Score=55.91 Aligned_cols=63 Identities=27% Similarity=0.285 Sum_probs=50.7
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCch------------hhhHHHHHHHcCceEEEEeecCC
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNA------------RVQKGAVVKAAGGLGMVLANTES 431 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 431 (762)
..-++|+.+... ....|....+...+++|||||+.++.+. +..|.+++.++||.|+|++++..
T Consensus 22 v~gelVfvGyG~---~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGL---VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCc---CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 456788876553 2356877777788999999999998863 66899999999999999999854
No 70
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.30 E-value=0.012 Score=64.02 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=63.3
Q ss_pred ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc------ccccCcccceEEEchhhHHHHHHHHhcCCC
Q 004301 392 PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE------LVADAHLLPATAVGQKFGDAIKSYLVSDPK 465 (762)
Q Consensus 392 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 465 (762)
...+++|++++.||.|.|.+|++.++++||.++++.|+..+-.. .....-.||++++++++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 46789999999999999999999999999999999998543222 223357899999999999999886666655
Q ss_pred cEEEE
Q 004301 466 PTVTI 470 (762)
Q Consensus 466 ~~~~i 470 (762)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 54433
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.30 E-value=0.011 Score=55.91 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=50.0
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCC------------------chhhhHHHHHHHcCceEEEEe
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGV------------------NARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 427 (762)
.+-|+|+.+... ....|....+...+++|||||+.++. |.+..|..++++.||.|+|++
T Consensus 20 vtg~lVfvGyGi---~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 20 VTAPVVFAGYGI---TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred ceEeEEEecCCc---CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 356788876542 23557777777789999999998774 466789999999999999999
Q ss_pred ecCCC
Q 004301 428 NTESN 432 (762)
Q Consensus 428 n~~~~ 432 (762)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98543
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.25 E-value=0.085 Score=46.46 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=62.1
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEEcCceEEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVG 754 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~ 754 (762)
...+.+++|+|.+. +..|++.... .....++++|..-.+ ++|++.++.|+|.+.. + .+.+.+.|...-.+..+.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-~g~~~~~l~i~~e~~~~~ 94 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPE--SLSSFFSVEPPSGFL-APGESVELEVTFSPTK-P-LGDYEGSLVITTEGGSFE 94 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCC--cCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-CceEEEEEEEEECCeEEE
Confidence 47888999999999 9999987644 234556777776566 7999999999999652 2 346789999987677888
Q ss_pred eEEEEEe
Q 004301 755 SPIAISW 761 (762)
Q Consensus 755 ~P~~v~~ 761 (762)
+|+-++.
T Consensus 95 i~v~a~~ 101 (102)
T PF14874_consen 95 IPVKAEV 101 (102)
T ss_pred EEEEEEE
Confidence 8887653
No 73
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.40 E-value=0.019 Score=52.92 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=74.8
Q ss_pred eeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccc----------
Q 004301 367 LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEEL---------- 436 (762)
Q Consensus 367 ~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~---------- 436 (762)
.+++|.+. ....|.... +.-...+.+++++||+|+|..|..+++++||..+|+.++.......
T Consensus 65 ~~~lV~ad------Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLAD------PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred CcceeecC------ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 35666643 446676543 2356788999999999999999999999999999998775433221
Q ss_pred cccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecc
Q 004301 437 VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEG 474 (762)
Q Consensus 437 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~ 474 (762)
..+...+|++++-..+|..++..++.....-+.|...-
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 12357899999999999988888877666666665443
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.23 E-value=0.085 Score=44.06 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=38.2
Q ss_pred ceEEEEEEEEecCC-C-ceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCC
Q 004301 676 SVLKYTRSLTNVGP-P-GTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPS 736 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~-~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~ 736 (762)
...+++.+|+|.+. . ...++++.. |+|-++...|..+...++|++++++++|+++.+..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE----TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeC--CCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 58999999999997 4 567788888 99999888888776558999999999999986544
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.07 E-value=0.03 Score=52.36 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=36.0
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecC
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTE 430 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 430 (762)
-+++|||+|++.|...+..|.++|++.||+|+|+|.+.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecCh
Confidence 57999999999999999999999999999999999874
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.32 E-value=0.083 Score=53.29 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=45.1
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCC-----CccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCC
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTL-----IPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTES 431 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~-----~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 431 (762)
.+-++||++. |....+ ...+++|||||++++.+.+.+|..+|+++||+|+|++++..
T Consensus 45 v~g~lVyvny---------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY---------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC---------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4567888653 333222 24589999999999999889999999999999999999853
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.23 Score=53.06 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=62.3
Q ss_pred CcccCCCCC---ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc----ccCcccceEEEchhhHHH
Q 004301 383 NLCMMDTLI---PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV----ADAHLLPATAVGQKFGDA 455 (762)
Q Consensus 383 ~~c~~~~~~---~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~~~~ 455 (762)
++|.+...- .......++++.||+|+|.+|..+|+.+|..++|+||+........ .....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 456654331 3456677999999999999999999999999999999866543322 234678899999999999
Q ss_pred HHHHHhcC
Q 004301 456 IKSYLVSD 463 (762)
Q Consensus 456 l~~~~~~~ 463 (762)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98875433
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.86 E-value=1.7 Score=39.31 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=40.6
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCC
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMP 735 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 735 (762)
-.-.++++|+|.+. +.+|++++.. ++|+++......+++ ++|++.++.|.|..+...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g--~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEG--LPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES---SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEec--CCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 35677889999999 9999999998 889999655578888 899999999999998654
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.74 E-value=1.8 Score=39.45 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=52.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeec-C-CCC--------------eEEEE-----EcCeEEEeecCeeeEEEEEEEEec
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSS-T-GPG--------------VKISV-----EPATLSFTQANEKKSYTVTFTVSS 733 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~-~-~~~--------------~~v~v-----~p~~~~~~~~~~~~~~~vt~~~~~ 733 (762)
++.+++++|+|.++ ..+|.+.+... + ..| +.+.+ .|..+++ +++++++++++|+.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEEcCC
Confidence 68999999999999 99999887541 1 111 11111 1445777 8999999999999987
Q ss_pred CCCCCeEEEEEEEEc
Q 004301 734 MPSNTNSFAHLEWSD 748 (762)
Q Consensus 734 ~~~~~~~~G~i~~~~ 748 (762)
..-.+.+-|-|.++.
T Consensus 106 ~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 106 KAFDGIILGGIYFSE 120 (121)
T ss_pred CCcCCEEEeeEEEEe
Confidence 766778888888763
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=89.17 E-value=1.7 Score=41.56 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=42.7
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchh-------------------hhHHHHHHHcCceEEEE
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNAR-------------------VQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~ 426 (762)
..-|+|+.+..-...+ -....+..-|++||||++..++..+ ..|...+.+.||.|+|+
T Consensus 22 ~~~elVFvGyGi~ape---~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 22 KDSPLVFVGYGIVAPE---YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred ccCCEEEeccCccCcc---cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 4567788765532110 1122455678999999999765422 24899999999999999
Q ss_pred eecC
Q 004301 427 ANTE 430 (762)
Q Consensus 427 ~n~~ 430 (762)
+...
T Consensus 99 v~~~ 102 (157)
T cd04821 99 VHET 102 (157)
T ss_pred EeCC
Confidence 9764
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=80.92 E-value=15 Score=33.30 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=47.9
Q ss_pred eEEEEEEEEecCC-CceEEEEEeec--C---CCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 677 VLKYTRSLTNVGP-PGTYKVFITSS--T---GPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 677 ~~~~~rtv~n~~~-~~~y~~~~~~~--~---~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
..+.+++|+|.++ +..+.+.+... . .+.-.+-|.|..+.+ ++|++|+++| +.....+.+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 4566899999998 77777777651 1 112257789999999 8999999999 7754445555555566666
No 82
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=79.88 E-value=19 Score=33.59 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=51.3
Q ss_pred eEEEEEEEEecCC--CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 677 VLKYTRSLTNVGP--PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 677 ~~~~~rtv~n~~~--~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
...+.+.|-|-.+ -+.-+++... -.++++--.|..+++ .+++.++++.+++... ...+..||.|+|.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat--~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELAT--LGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEe--cCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 4555666777665 3455555555 678888888999998 7999999999999983 4457999999986
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.39 E-value=8.6 Score=42.57 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=57.2
Q ss_pred ceEEEEEEEEecCC-C-ceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 676 SVLKYTRSLTNVGP-P-GTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~-~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
.+.++...+.|.|+ + ..-++++.. |+|-++.|+|.++-..++++.+++.+|++++.+..-+-++=.|.-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~--PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNG--PQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecC--CccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 57888999999999 4 556678888 9999999999988777999999999999998766555555555555
No 84
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.32 E-value=1.3 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCC
Q 004301 125 TSGSASEVIVGVLDTGVWPESKSFD 149 (762)
Q Consensus 125 ~~~~G~Gv~VgVIDtGid~~Hp~f~ 149 (762)
..|.|+||+|||+|||+|+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 3678999999999999999999886
No 85
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=76.71 E-value=22 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=34.5
Q ss_pred ceEEEEEEEEecCC--CceEEEEEeecCCCCeEEEEEcCeE-EEeecCeeeEEEEEEEEe
Q 004301 676 SVLKYTRSLTNVGP--PGTYKVFITSSTGPGVKISVEPATL-SFTQANEKKSYTVTFTVS 732 (762)
Q Consensus 676 ~~~~~~rtv~n~~~--~~~y~~~~~~~~~~~~~v~v~p~~~-~~~~~~~~~~~~vt~~~~ 732 (762)
...+++.+|+|.|. ...+.+.+.. .|..+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~---~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYL---DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEE---TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEE---CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 58999999999998 5667777766 44444 22223 44 789999988888776
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=70.00 E-value=52 Score=36.69 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=47.0
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcC-----eEEEeecCeeeEEEEEEEEecCCC
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPA-----TLSFTQANEKKSYTVTFTVSSMPS 736 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~-----~~~~~~~~~~~~~~vt~~~~~~~~ 736 (762)
.+..|++++.|.+. +.+|..++... |+|.+....-. ++.+ ++||+++|+|.+.++....
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~-pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~ 348 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGL-PEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNAT 348 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccC-CCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCC
Confidence 47899999999999 99999999832 88876665533 4556 7999999999999986543
No 87
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=68.64 E-value=23 Score=31.05 Aligned_cols=51 Identities=24% Similarity=0.226 Sum_probs=38.2
Q ss_pred eEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEe
Q 004301 677 VLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVS 732 (762)
Q Consensus 677 ~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 732 (762)
.....++|+|.++ ...|++.... |..+ .|.|..-.+ +++++.++.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~--~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTN--PNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES---TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCC--CceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 5677889999999 9999988776 6655 467988777 799999999999874
No 88
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=63.65 E-value=28 Score=39.19 Aligned_cols=55 Identities=25% Similarity=0.310 Sum_probs=46.7
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEec
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSS 733 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 733 (762)
-.-..+.++.|.+. +.+|++++.. +++.++...+..+++ +++++.++.|++..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g--~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLG--LPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEec--CCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 35677889999999 9999999998 888888876457888 7999999999998874
No 89
>PLN03080 Probable beta-xylosidase; Provisional
Probab=59.82 E-value=34 Score=41.65 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=47.1
Q ss_pred eEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEE------cCeEEEeecCeeeEEEEEEEE-ec----CCCCCeE--EE
Q 004301 677 VLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVE------PATLSFTQANEKKSYTVTFTV-SS----MPSNTNS--FA 742 (762)
Q Consensus 677 ~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~------p~~~~~~~~~~~~~~~vt~~~-~~----~~~~~~~--~G 742 (762)
..+++++|||+|+ .....+.+....|.. .+... -+.+.+ ++||+++++++++. .. +..+.|. -|
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G 762 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLG 762 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCc
Confidence 5889999999999 776666665532422 11111 223445 79999999999976 31 2223333 35
Q ss_pred EEEEE--cCceEEEeE
Q 004301 743 HLEWS--DGKYIVGSP 756 (762)
Q Consensus 743 ~i~~~--~~~~~v~~P 756 (762)
...+. +..|.|+++
T Consensus 763 ~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 763 DHVLMLGDLEHSLSIE 778 (779)
T ss_pred cEEEEEeCCccceEEe
Confidence 55444 445666654
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=58.09 E-value=72 Score=28.02 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=35.4
Q ss_pred ceEEEEEEEEecCC-C-ceEEE-----EEeecCCCCeE---EEEEcCeEEEeecCeeeEEEEEEEEe
Q 004301 676 SVLKYTRSLTNVGP-P-GTYKV-----FITSSTGPGVK---ISVEPATLSFTQANEKKSYTVTFTVS 732 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~-~~y~~-----~~~~~~~~~~~---v~v~p~~~~~~~~~~~~~~~vt~~~~ 732 (762)
+..++.++++|..+ . .+-++ .+.. .|+. +......+++ +++++.++++++...
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y---tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY---TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC---TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE---CCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 58999999999988 5 44222 2333 5663 4556666777 799999999999876
No 91
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=57.56 E-value=30 Score=28.81 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred EEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEEcCce
Q 004301 706 KISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKY 751 (762)
Q Consensus 706 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~ 751 (762)
.+++.|..+++ ..|+++.|+++++.... .. ...+.|++.+.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---~~-~~~v~w~Ssn~ 44 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA---KV-TGKVTWTSSNP 44 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC---Cc-cceEEEEECCC
Confidence 56788999998 68999999999754421 12 77889996543
No 92
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.73 E-value=25 Score=32.15 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.3
Q ss_pred cEEEEEcceeeEEEEEcCHHHHHHHhcCCCeE
Q 004301 64 EILYTYDNVIHGFSTQLTREEAESLEQRPGIL 95 (762)
Q Consensus 64 ~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~ 95 (762)
++.|.=+....-+.+.+++-..+.|.++||+.
T Consensus 94 kidY~D~yA~E~vdId~tkvd~k~L~k~~G~s 125 (152)
T COG4808 94 KLDYKDTYAQENVDIDMTKVDFKALQKISGIS 125 (152)
T ss_pred eeeeecccceeeeccceeeecHHHHhcCcCcc
Confidence 34443345677778888888889999999873
No 93
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=38.66 E-value=1.7e+02 Score=26.83 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=44.5
Q ss_pred ceEEEEEEEEecCC-C--ceEEEEEeecCCCCeEEEE-------EcCeEEEeecCeeeEEEEEEEEecCCCC--CeEEEE
Q 004301 676 SVLKYTRSLTNVGP-P--GTYKVFITSSTGPGVKISV-------EPATLSFTQANEKKSYTVTFTVSSMPSN--TNSFAH 743 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~--~~y~~~~~~~~~~~~~v~v-------~p~~~~~~~~~~~~~~~vt~~~~~~~~~--~~~~G~ 743 (762)
+...+.+++||.|. . ......|......|..+.+ .+..+++ ++|++..+.|+........+ ....-.
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~~~ 96 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTPAG 96 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCccccCE
Confidence 46688999999987 2 2222223221123331111 2456788 79999999999988643322 222222
Q ss_pred EEEE--cCceEEEeEE
Q 004301 744 LEWS--DGKYIVGSPI 757 (762)
Q Consensus 744 i~~~--~~~~~v~~P~ 757 (762)
|..+ ++...+.+|+
T Consensus 97 l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 97 LTVTPPGGTAPVTVPW 112 (131)
T ss_pred EEEECCCCCccEEEeC
Confidence 4444 4555555553
No 94
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=38.09 E-value=1.7e+02 Score=25.96 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=34.4
Q ss_pred eeec-cCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 004301 238 RGMA-TRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGG 283 (762)
Q Consensus 238 ~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~ 283 (762)
.... ++++|+.+ +.++||....++.-++++.+.|+++|-+|--.
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 4444 46777765 55667888899999999999999999998654
No 95
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.40 E-value=1.6e+02 Score=27.16 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHHHHHH
Q 004301 1 MKTFKSLISLLLVLGFF 17 (762)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (762)
||.||.+++++|.|..+
T Consensus 1 m~~~r~ll~~fL~l~~~ 17 (155)
T COG3915 1 MRTMRVLLLTFLALISS 17 (155)
T ss_pred CchHHHHHHHHHHHHhh
Confidence 89999887655554433
No 96
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.67 E-value=2.6e+02 Score=27.46 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=43.8
Q ss_pred ceEEEEEEEEecCCCceEEEEEeecC-C-CCeEEEEEc---CeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 676 SVLKYTRSLTNVGPPGTYKVFITSST-G-PGVKISVEP---ATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 676 ~~~~~~rtv~n~~~~~~y~~~~~~~~-~-~~~~v~v~p---~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
...+++.+|.|+|+..-|.+++..+. | +++++ |.- .++..-++|+..+..+++.+. ..|.+.++....+
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~l-vsG~~s~~~~~i~pg~~vsh~~vv~p~--~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFEL-VSGSLSASWERIPPGENVSHSYVVRPK--KSGYFNFTPAVVT 111 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCCccccEe-ccCceEEEEEEECCCCeEEEEEEEeee--eeEEEEccCEEEE
Confidence 58999999999999777888887622 3 44444 221 112222788888888888775 3445555444333
No 97
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=34.58 E-value=40 Score=24.17 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 551 AALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 551 aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
+--|++.+|+|++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457899999999999999976543
No 98
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=32.55 E-value=84 Score=38.34 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=36.6
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEc-------CeEEEeecCeeeEEEEEEEEe
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEP-------ATLSFTQANEKKSYTVTFTVS 732 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p-------~~~~~~~~~~~~~~~vt~~~~ 732 (762)
...+++++|||+|+ ...-.+.+....|.+ .+. .| ..+.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 47899999999999 665555554432332 221 23 23455 899999999999875
No 99
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=31.94 E-value=1.3e+02 Score=21.88 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=23.5
Q ss_pred EEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEE
Q 004301 682 RSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTF 729 (762)
Q Consensus 682 rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~ 729 (762)
.+++|.|+ +..-. .+.. .-| =.+++.+.-.+ ++|++..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~t--sCg-Ct~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQT--SCG-CTTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeE--ccC-CEEeeCCcceE-CCCCEEEEEEEC
Confidence 57889988 44332 2332 222 12223333234 789999888874
No 100
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=31.45 E-value=22 Score=16.16 Aligned_cols=6 Identities=67% Similarity=0.972 Sum_probs=4.2
Q ss_pred cccCCC
Q 004301 487 AFSSRG 492 (762)
Q Consensus 487 ~fSs~G 492 (762)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 101
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=31.35 E-value=1.8e+02 Score=22.03 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=23.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSF 716 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~ 716 (762)
+..+++++++|.|. ..+ .+.+.-.-|+|+.+ .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~-~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPAT-NVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceE-eEEEEEcCCCCCEE--EeCcEEE
Confidence 58999999999998 433 34444322666654 3444443
No 102
>PRK13791 lysozyme inhibitor; Provisional
Probab=30.52 E-value=87 Score=28.15 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=15.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhcc
Q 004301 1 MKTFKSLISLLLVLGFFDVSVAA 23 (762)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (762)
|+.||.++++++++++..++...
T Consensus 1 ~~~mk~~~~~~~~~~ls~~~~~~ 23 (113)
T PRK13791 1 MMKRKLIPFTLFLAALSASTTSI 23 (113)
T ss_pred CchHHHHHHHHHHHHHhhhhhhc
Confidence 78888877777666665555443
No 103
>PRK15019 CsdA-binding activator; Provisional
Probab=29.85 E-value=49 Score=31.27 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=27.9
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004301 535 NIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRS 568 (762)
Q Consensus 535 ~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 568 (762)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444665 68999999999999999999999876
No 104
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=29.58 E-value=1.1e+02 Score=25.78 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=12.8
Q ss_pred eEEEeecCeeeEEEEEEEEec
Q 004301 713 TLSFTQANEKKSYTVTFTVSS 733 (762)
Q Consensus 713 ~~~~~~~~~~~~~~vt~~~~~ 733 (762)
..++ ++|++++|+.++....
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEE--TT-EEEEEEEESS--
T ss_pred EEEE-CCCCEEEEEEEECCCC
Confidence 4566 7999999999886653
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.18 E-value=55 Score=30.58 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=28.6
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHH
Q 004301 535 NIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSA 569 (762)
Q Consensus 535 ~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~ 569 (762)
..+.|.| =|+.|-|++|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 4455666 589999999999999999999998753
No 106
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.26 E-value=66 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=27.8
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004301 535 NIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRS 568 (762)
Q Consensus 535 ~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 568 (762)
..+.|.| =|+.|-|.+|||.+.+-..||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 68999999999999999999999875
No 107
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.65 E-value=52 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.7
Q ss_pred chhhhHHHHHHHH
Q 004301 542 MSCPHVSGLAALL 554 (762)
Q Consensus 542 mAaP~VAG~aALl 554 (762)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 108
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=24.23 E-value=5.4e+02 Score=26.24 Aligned_cols=71 Identities=11% Similarity=0.217 Sum_probs=44.1
Q ss_pred ceEEEEEEEEecCCCceEEEEEeecCCCC---eEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 676 SVLKYTRSLTNVGPPGTYKVFITSSTGPG---VKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 676 ~~~~~~rtv~n~~~~~~y~~~~~~~~~~~---~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
.....+++|+|.++...|-+..-.+..++ ..+-|+|.-+.+ ++++++.++|......-|.+...-=++...
T Consensus 41 ~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl-~~~~~~~lRI~~~~~~lP~DRESlf~lnv~ 114 (228)
T PRK15188 41 GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVI-QPKKENILRIMYVGPSLPTDRESVFYLNSK 114 (228)
T ss_pred CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEE-CCCCceEEEEEECCCCCCCCceEEEEEEEE
Confidence 35677889999885333443321111222 247788999999 799999999988754445554433344444
No 109
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=68 Score=30.08 Aligned_cols=32 Identities=34% Similarity=0.259 Sum_probs=25.8
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004301 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRS 568 (762)
Q Consensus 536 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 568 (762)
.+.|=|= |++|.|.+|++.+.+-..||++|..
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 6899999999999999999999754
No 110
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.78 E-value=78 Score=29.01 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=26.5
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHHH
Q 004301 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSA 569 (762)
Q Consensus 536 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~ 569 (762)
.+.|.|= |+.|-|++|||.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556654 67999999999999999999998764
No 111
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.39 E-value=68 Score=24.71 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=22.2
Q ss_pred ceeeeccccchhhhHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 004301 533 SFNIISGTSMSCPHVSGLA------ALLKAAHPEWSPAAIRSALM 571 (762)
Q Consensus 533 ~y~~~sGTSmAaP~VAG~a------ALl~~~~p~~sp~~ik~~L~ 571 (762)
+--.+.||=+..=.|.... .-+.+.||.+++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3345566666555544442 23466799999999999884
No 112
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.24 E-value=2.4e+02 Score=31.62 Aligned_cols=73 Identities=27% Similarity=0.336 Sum_probs=53.5
Q ss_pred eccCceEEEEEEEecCCCCHHHHHHHHHHHHhCC-CcEEEEccCCCC----CCCcccHHHHHHHHHHhcCCEEEEecCCC
Q 004301 240 MATRARVAAYKVCWVGGCFSSDILAAIEQAIDDN-VNVLSMSLGGGT----SDYYKDSVAIGAFAAMEKGILVSCSAGNA 314 (762)
Q Consensus 240 vAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g-~dVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~ 314 (762)
=.|.++++.|.+.=.+......|++||+.|-+.+ +|||=.-=|+++ ..+.++.+.. ......+.||.|-|-+
T Consensus 159 R~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaR---Ai~~s~iPvISAVGHE 235 (440)
T COG1570 159 RFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVAR---AIAASRIPVISAVGHE 235 (440)
T ss_pred hCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHH---HHHhCCCCeEeecccC
Confidence 3588899888776443367788999999998877 999999989876 2233344443 3447788999998876
Q ss_pred C
Q 004301 315 G 315 (762)
Q Consensus 315 g 315 (762)
-
T Consensus 236 t 236 (440)
T COG1570 236 T 236 (440)
T ss_pred C
Confidence 4
No 113
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.83 E-value=2.8e+02 Score=29.70 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=49.2
Q ss_pred ccCceEEEEEEEecCCCCHHHHHHHHHHHHhCC----CcEEEEccCCCC----CCCcccHHHHHHHHHHhcCCEEEEecC
Q 004301 241 ATRARVAAYKVCWVGGCFSSDILAAIEQAIDDN----VNVLSMSLGGGT----SDYYKDSVAIGAFAAMEKGILVSCSAG 312 (762)
Q Consensus 241 AP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g----~dVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAG 312 (762)
.|.+++..|.+.=.+.....+|+.||+.+.+.+ +|||-+-=||++ ..+.+..+.. ...+.-+.|+.+-|
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~var---ai~~~~~PvisaIG 115 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVAR---AIAASPIPVISAIG 115 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHH---HHHhCCCCEEEecC
Confidence 455666655553222267788999999998765 999999999876 2222333443 34467899999999
Q ss_pred CCC
Q 004301 313 NAG 315 (762)
Q Consensus 313 N~g 315 (762)
=+-
T Consensus 116 He~ 118 (319)
T PF02601_consen 116 HET 118 (319)
T ss_pred CCC
Confidence 763
No 114
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=22.30 E-value=87 Score=29.81 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccCCCCCCeEEEEeCCC
Q 004301 1 MKTFKSLISLLLVLGFFDVSVAAQNPDQRATYIIHMAKS 39 (762)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~~~~~ 39 (762)
||++..++++++++++.....++...-.+|.|=+..+-.
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~t~~~~ 39 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAPDIKPGLWEVTTTTE 39 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccCCCCCcccEEEEEec
Confidence 666655554444444323332333334566665555543
No 115
>PRK11023 outer membrane lipoprotein; Provisional
Probab=21.96 E-value=7.3e+02 Score=24.41 Aligned_cols=53 Identities=19% Similarity=0.045 Sum_probs=28.8
Q ss_pred HHHhcCCCeEEEEeCceeccCCC---CCCcccCCcCCC--CCCcCCCCCCCcEEEEEc
Q 004301 86 ESLEQRPGILSVLPELKYELHTT---RSPEFLGLDKSA--NLFPTSGSASEVIVGVLD 138 (762)
Q Consensus 86 ~~L~~~p~V~~v~~~~~~~~~~~---~s~~~~g~~~~~--~~~~~~~~G~Gv~VgVID 138 (762)
+..++.++|+.|.-.-.+....+ ...+.|=..++. -+|+....+.++.|-+-+
T Consensus 96 ~ia~~v~GV~~V~N~l~V~~~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~ 153 (191)
T PRK11023 96 QIAMGVEGVNEVYNEIRQGQPIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTEN 153 (191)
T ss_pred HHHhcCCCceeecceeeeccccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEEC
Confidence 34567899999987776654321 111111000111 156666777777777665
No 116
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.58 E-value=1.3e+02 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 004301 550 LAALLKAAHPEWSPAAIRSALMTTA 574 (762)
Q Consensus 550 ~aALl~~~~p~~sp~~ik~~L~~TA 574 (762)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998644
No 117
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.26 E-value=4.6e+02 Score=28.63 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=27.3
Q ss_pred ceEEEEEEEEecCC-CceEEEEEee--------c-------CCCC----eEEEEEcCeEEEeecCeeeEEEEEEEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITS--------S-------TGPG----VKISVEPATLSFTQANEKKSYTVTFTV 731 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~--------~-------~~~~----~~v~v~p~~~~~~~~~~~~~~~vt~~~ 731 (762)
++.+++.+|||.|+ +... -+... + .|+. -.++|+|.+- + .+||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~L-geF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRL-GEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEE-EEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEe-eeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-c-CCCceEEEEEEeeh
Confidence 68999999999998 4322 12111 0 0210 0134445432 1 68999999998855
No 118
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=20.23 E-value=45 Score=27.48 Aligned_cols=37 Identities=22% Similarity=0.504 Sum_probs=27.4
Q ss_pred EEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEEc
Q 004301 706 KISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSD 748 (762)
Q Consensus 706 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 748 (762)
+|++.|..+.+ ..|++..|++++....... ..+.|++
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~~~~-----~~v~w~s 40 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSDGSN-----SKVTWSS 40 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEESTT-----SCEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECCCcE-----eEEEEEe
Confidence 46778888888 7899998888888874332 4577774
Done!