BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004302
(762 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HW6|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|C Chain C, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|D Chain D, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
Length = 433
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 271 SADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCP----GFEDGEFESSKLM-RPAASF 325
+ +E + D + H + V G++ G G+ DGE S L P +
Sbjct: 349 AGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIA 408
Query: 326 YHKDDDCLYIVDSENHAIRR 345
Y C YI D +NH +R+
Sbjct: 409 YDXKRKCFYIGDCDNHRVRK 428
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 279 LFLSDSNHHRIIVFDGNGKILDCIG----SCPGFEDGEF-ESSKLMRPAASFYHKDDDCL 333
+ D +H I + G++ G G+ DG+ + ++ P Y ++ +C
Sbjct: 354 FYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECF 413
Query: 334 YIVDSENHAIRR 345
+I D EN IR+
Sbjct: 414 FIGDRENRRIRK 425
>pdb|2H29|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 1
pdb|2H29|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 1
Length = 189
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 117 FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI 176
F D CD I G T++ +K+ ++ ++ F+ G + +++ +E L KE +
Sbjct: 69 FGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELY-FVIGTDQYNQLEKWYQIEYL-KEMV 126
Query: 177 TFPILLSNKNFPQMENG 193
TF ++ +KN +EN
Sbjct: 127 TFVVVNRDKNSQNVENA 143
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 137 WDVKTGMCLKTLP 149
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 137 WDVKTGMCLKTLP 149
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 137 WDVKTGKCLKTLP 149
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 158 WDVKTGKCLKTLP 170
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 137 WDVKTGKCLKTLP 149
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 135 WDVKTGKCLKTLP 147
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 134 WDVKTGKCLKTLP 146
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 151 WDVKTGKCLKTLP 163
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 140 WDVKTGKCLKTLP 152
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 139 WDVKTGKCLKTLP 151
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 134 WDVKTGKCLKTLP 146
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 464 HQIDSSCSLKELPYAGLISSSIAFQ 488
+ + LK LP S++ F
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFN 180
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 133 WDVKTGKCLKTLP 145
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 140 WDVKTGKCLKTLP 152
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 140 WDVKTGKCLKTLP 152
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 137 WDVKTGKCLKTLP 149
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 404 SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLL 463
S D NLL+ +TL I D++SG+ + +KG S + C + + + +
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 464 HQIDSSCSLKELP 476
+ + LK LP
Sbjct: 130 WDVKTGKCLKTLP 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,184,237
Number of Sequences: 62578
Number of extensions: 906032
Number of successful extensions: 1724
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1703
Number of HSP's gapped (non-prelim): 24
length of query: 762
length of database: 14,973,337
effective HSP length: 106
effective length of query: 656
effective length of database: 8,340,069
effective search space: 5471085264
effective search space used: 5471085264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)