BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004302
(762 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 28/177 (15%)
Query: 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSC-PGFEDGEFESSKLMRPA 322
L FPG ++ D+SG RL ++D+ HHRI+V NG+IL IG G +DG F + P
Sbjct: 218 LLFPGKVTVDKSGERLVIADTGHHRILVTLKNGQILHTIGGPNSGRKDGRFSEAAFNSPQ 277
Query: 323 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERD 382
++ +Y+ D+ENH IR+ D+ ++ TV +GI + G +++
Sbjct: 278 GVAIK--NNVIYVADTENHLIRKIDLELEIVTTV---AGIGIQ------------GVDKE 320
Query: 383 NDTKSEKLDPQSLIFPWHLM-------KSEDDNLLIINRSFETLWIMDLASGEIKEA 432
K E+ Q + PW ++ EDD L I +W + L G++ +
Sbjct: 321 GGAKGEE---QPISSPWDVVFGNSVSGTQEDDVLWIAMAGIHQVWALMLEGGKLPKG 374
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFD---GNGKILDCIGSCPGFEDGEFESSK 317
N L P I+ D+ L+++DS +H+I V D N L G F S
Sbjct: 466 NAKLQHPLGITWDKKRKLLYVADSYNHKIKVVDPKMKNCATLAGTGEASNVVGSSFTQST 525
Query: 318 LMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL 353
P ++ +Y+ D+ NH I+ D+ ++L
Sbjct: 526 FNEPGGLCIEENGRLVYVADTNNHQIKVLDLETKIL 561
>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
Length = 725
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSC-PGFEDGEFESSKLMRPA 322
L FPG ++ D + RL ++D+ HHRI+V NG+I IG PG +DG F S P
Sbjct: 223 LLFPGKVAVDHATGRLVVADTGHHRILVIQKNGRIQSSIGGPNPGRKDGMFSESSFNSPQ 282
Query: 323 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERD 382
D+ +Y+ D+ENH IR+ D+ + TV +G +
Sbjct: 283 GVAIA--DNVIYVADTENHLIRKIDLEAEKVTTV------------------AGVGIQGT 322
Query: 383 NDTKSEKLDPQSLIFPWHLMKS-------EDDNLLIINRSFETLWIMDLASGEIKE 431
+ E+ D Q + PW + +D L I +W + L SG + +
Sbjct: 323 DTEGGEEGDKQPISSPWDVALGTSGSEVQRNDILWIAMAGTHQIWALLLDSGTLPK 378
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDG--EFESSKL 318
N L P ++ DE L+++DS +H+I V D K + D F S
Sbjct: 471 NAKLQHPLGVAWDEERQVLYVADSYNHKIKVVDPKTKGCTTLAGTGDASDASSSFAESAF 530
Query: 319 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETV 356
P + LY+ D+ NH I+ D+ R + +
Sbjct: 531 NEPGGLCIGESGRLLYVADTNNHQIKVMDLEARTVSVL 568
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 255 ACSSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCP---GFEDG 311
A SS + PG + ESG L+++D+N+H+I V D + + + C DG
Sbjct: 521 ASSSFAESAFNEPGGLCIGESGRLLYVADTNNHQIKVMDLEARTVSVLPVCKSDSAVVDG 580
Query: 312 EFESSK 317
F K
Sbjct: 581 SFPREK 586
>sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
Length = 726
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSC-PGFEDGEFESSKLMRPA 322
L FPG I+ D NRL ++D+ HHRI+V NG+I IG PG +DG F S P
Sbjct: 223 LLFPGKITVDHVSNRLVIADTGHHRILVVWKNGQIQYSIGGPNPGRKDGIFSESSFNSPQ 282
Query: 323 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERD 382
++ +Y+ D+ENH IR+ D+ ++ TV +GI G +
Sbjct: 283 GVAIM--NNIIYVADTENHLIRKIDLEAEMVSTV---AGI---------------GIQGT 322
Query: 383 NDTKSEKLDPQSLIFPWHLM------KSEDDNLLIINRS-FETLWIMDLASGEIKE 431
+ K D Q + PW ++ + + DN+L I + +W + L G + +
Sbjct: 323 DKEGGAKGDEQPISSPWDVVFGRSGPEVQRDNILWIAMAGTHQIWALLLDCGRLPK 378
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK---ILDCIGSCPGFEDGEFESSK 317
N L P ++ D+ N L+++DS +H+I V D K L G+ F S
Sbjct: 471 NARLQHPLGVTWDQKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGNASNMIGSSFTDST 530
Query: 318 LMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPT 359
P ++ LY+ D+ NH I+ D+ + + +V+P
Sbjct: 531 FNEPGGLCIGENGQLLYVADTNNHQIKVLDLETKTV-SVFPV 571
>sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1
Length = 726
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSC-PGFEDGEFESSKLMRPA 322
L FPG ++ D+ +RL ++D+ HHRI+V NG+I IG PG +DG F S P
Sbjct: 223 LLFPGKVTVDQVTDRLVIADTGHHRILVVWKNGQIQYSIGGPNPGRKDGIFSESTFNSPQ 282
Query: 323 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERD 382
++ +Y+ D+ENH IR+ D+ + TV +GI + G +++
Sbjct: 283 GVAIM--NNIIYVADTENHLIRKIDLEAEKVSTV---AGIGIQ------------GTDKE 325
Query: 383 NDTKSEKLDPQSLIFPWHLM-------KSEDDNLLIINRSFETLWIMDLASGEIKE 431
K E+ Q + PW ++ D L I +W + L SG++ +
Sbjct: 326 GGAKGEQ---QPISSPWDVVFGTSGSEVQRGDILWIAMAGTHQIWALLLDSGKLPK 378
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK---ILDCIGSCPGFEDGEFESSK 317
N L P ++ D+ N L+++DS +H+I V D K L G F S
Sbjct: 471 NAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTNNVTSSSFTEST 530
Query: 318 LMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETV 356
P ++ + LY+ D+ NH I+ D+ +++ +
Sbjct: 531 FNEPGGLCIGENGELLYVADTNNHQIKVMDLETKMVSVL 569
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMR 320
N + P ++ D+ G+ ++++D ++HR+ VFD NG+ + GS G G+ S +
Sbjct: 802 NAKFNNPWGVAVDDLGS-IYVADKDNHRVQVFDKNGQFIAKFGSF-GHLPGQLNSPLFIA 859
Query: 321 PAASFYHKDDDCLYIVDSENHAI 343
+ +H +Y+ DS NH I
Sbjct: 860 VSRVTHH-----VYVSDSSNHRI 877
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,513,031
Number of Sequences: 539616
Number of extensions: 11670384
Number of successful extensions: 26183
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 26147
Number of HSP's gapped (non-prelim): 35
length of query: 762
length of database: 191,569,459
effective HSP length: 125
effective length of query: 637
effective length of database: 124,117,459
effective search space: 79062821383
effective search space used: 79062821383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)