Query 004302
Match_columns 762
No_of_seqs 350 out of 2668
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 21:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 100.0 3.5E-48 7.5E-53 474.1 47.3 416 86-561 395-838 (1057)
2 PLN02919 haloacid dehalogenase 99.9 8.8E-22 1.9E-26 242.3 36.6 259 260-560 619-892 (1057)
3 PTZ00056 glutathione peroxidas 99.9 2.9E-21 6.2E-26 196.6 14.0 134 88-229 19-181 (199)
4 cd03012 TlpA_like_DipZ_like Tl 99.9 2.3E-21 4.9E-26 182.2 11.1 114 91-213 7-126 (126)
5 TIGR02540 gpx7 putative glutat 99.9 2.5E-21 5.5E-26 188.1 11.7 129 90-226 4-153 (153)
6 cd00340 GSH_Peroxidase Glutath 99.9 2.6E-21 5.6E-26 188.0 10.9 124 89-221 3-151 (152)
7 PLN02412 probable glutathione 99.8 3.7E-21 8E-26 190.3 12.1 134 88-229 9-167 (167)
8 PLN02399 phospholipid hydroper 99.8 7.8E-21 1.7E-25 197.7 12.7 136 84-227 75-235 (236)
9 PRK15412 thiol:disulfide inter 99.8 1.9E-20 4.2E-25 188.0 13.0 129 87-230 44-180 (185)
10 PTZ00256 glutathione peroxidas 99.8 7.1E-20 1.5E-24 183.7 12.0 133 88-227 20-182 (183)
11 PF08534 Redoxin: Redoxin; In 99.8 9.3E-20 2E-24 174.6 10.4 120 88-221 6-145 (146)
12 cd03010 TlpA_like_DsbE TlpA-li 99.8 2E-19 4.4E-24 168.4 10.7 118 87-218 2-126 (127)
13 TIGR00385 dsbE periplasmic pro 99.8 2.2E-18 4.8E-23 171.1 12.7 127 86-227 38-172 (173)
14 TIGR01626 ytfJ_HI0045 conserve 99.8 3.4E-18 7.3E-23 171.6 11.6 120 97-228 48-181 (184)
15 cd03014 PRX_Atyp2cys Peroxired 99.7 7.2E-18 1.6E-22 161.1 12.2 123 87-222 5-141 (143)
16 cd03008 TryX_like_RdCVF Trypar 99.7 1.9E-18 4.1E-23 167.7 7.9 96 100-208 17-128 (146)
17 PRK03147 thiol-disulfide oxido 99.7 1.1E-17 2.3E-22 164.4 13.1 126 87-225 40-171 (173)
18 PRK00522 tpx lipid hydroperoxi 99.7 1.1E-17 2.3E-22 165.6 12.9 126 86-225 22-165 (167)
19 cd03017 PRX_BCP Peroxiredoxin 99.7 5.3E-18 1.1E-22 160.7 9.6 121 88-222 3-139 (140)
20 PRK09437 bcp thioredoxin-depen 99.7 9.6E-18 2.1E-22 162.6 11.4 126 86-224 8-151 (154)
21 PRK14018 trifunctional thiored 99.7 1.5E-17 3.3E-22 189.7 13.3 126 88-223 38-170 (521)
22 cd02967 mauD Methylamine utili 99.7 1.7E-17 3.7E-22 152.0 10.8 105 89-209 1-112 (114)
23 cd02969 PRX_like1 Peroxiredoxi 99.7 4.5E-17 9.7E-22 160.9 13.1 137 88-232 4-158 (171)
24 cd03018 PRX_AhpE_like Peroxire 99.7 2.8E-17 6.1E-22 157.5 9.9 113 87-213 6-134 (149)
25 PRK10606 btuE putative glutath 99.7 4.9E-17 1.1E-21 163.6 12.0 129 90-227 7-182 (183)
26 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.4E-16 3.1E-21 147.8 11.5 118 89-222 1-122 (123)
27 cd02968 SCO SCO (an acronym fo 99.7 1.4E-16 2.9E-21 151.4 10.6 115 88-211 2-142 (142)
28 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 8.4E-17 1.8E-21 149.0 8.9 108 87-208 4-124 (124)
29 cd03015 PRX_Typ2cys Peroxiredo 99.7 1.9E-16 4.1E-21 157.1 11.4 125 87-225 4-156 (173)
30 KOG4659 Uncharacterized conser 99.7 2.9E-15 6.2E-20 176.8 20.8 149 266-437 408-571 (1899)
31 PRK13728 conjugal transfer pro 99.7 2.2E-16 4.8E-21 157.9 9.9 104 97-228 62-173 (181)
32 TIGR03137 AhpC peroxiredoxin. 99.7 2.4E-16 5.1E-21 158.9 10.0 123 87-223 7-153 (187)
33 TIGR02661 MauD methylamine deh 99.7 6E-16 1.3E-20 156.2 12.7 122 87-225 51-178 (189)
34 cd02971 PRX_family Peroxiredox 99.6 6.4E-16 1.4E-20 146.2 10.2 113 88-214 2-131 (140)
35 cd02970 PRX_like2 Peroxiredoxi 99.6 6.3E-16 1.4E-20 147.4 9.3 110 88-211 2-148 (149)
36 PRK10382 alkyl hydroperoxide r 99.6 1.1E-15 2.3E-20 154.5 11.1 131 81-227 6-157 (187)
37 PRK13190 putative peroxiredoxi 99.6 8.7E-16 1.9E-20 156.7 10.5 125 88-227 8-155 (202)
38 cd02964 TryX_like_family Trypa 99.6 5.1E-16 1.1E-20 147.1 7.6 103 94-211 4-118 (132)
39 cd02966 TlpA_like_family TlpA- 99.6 3.3E-15 7.2E-20 133.5 11.5 109 91-211 2-116 (116)
40 cd03009 TryX_like_TryX_NRX Try 99.6 5.5E-16 1.2E-20 146.2 5.7 104 94-210 4-117 (131)
41 cd03016 PRX_1cys Peroxiredoxin 99.6 2.3E-15 4.9E-20 153.7 10.5 147 88-253 5-177 (203)
42 PRK13599 putative peroxiredoxi 99.6 6E-15 1.3E-19 152.1 12.1 130 87-227 7-157 (215)
43 TIGR02738 TrbB type-F conjugat 99.6 4.2E-15 9.1E-20 145.6 9.6 101 98-226 44-153 (153)
44 COG1225 Bcp Peroxiredoxin [Pos 99.5 5.1E-14 1.1E-18 137.7 11.6 127 85-224 7-154 (157)
45 PF13905 Thioredoxin_8: Thiore 99.5 2.4E-14 5.1E-19 127.3 8.3 85 108-205 1-95 (95)
46 PRK13191 putative peroxiredoxi 99.5 5E-14 1.1E-18 145.3 11.3 128 87-226 12-161 (215)
47 PRK15000 peroxidase; Provision 99.5 7.5E-14 1.6E-18 142.4 11.4 126 87-226 7-162 (200)
48 PTZ00137 2-Cys peroxiredoxin; 99.5 1.1E-13 2.4E-18 146.3 12.0 126 87-226 73-225 (261)
49 PTZ00253 tryparedoxin peroxida 99.5 8.1E-14 1.8E-18 141.8 10.4 119 95-227 23-162 (199)
50 PRK13189 peroxiredoxin; Provis 99.5 8.8E-14 1.9E-18 144.1 10.8 126 87-227 14-164 (222)
51 PF08450 SGL: SMP-30/Gluconola 99.4 6E-11 1.3E-15 123.3 25.3 156 266-507 1-164 (246)
52 cd02985 TRX_CDSP32 TRX family, 99.4 9.9E-13 2.2E-17 119.8 10.4 90 104-223 11-100 (103)
53 cd02950 TxlA TRX-like protein 99.4 8.1E-13 1.8E-17 127.8 10.1 98 106-233 18-117 (142)
54 KOG4659 Uncharacterized conser 99.3 1.3E-11 2.7E-16 146.8 15.7 151 260-424 528-690 (1899)
55 PF08450 SGL: SMP-30/Gluconola 99.3 2.4E-10 5.2E-15 118.9 19.3 170 266-516 41-222 (246)
56 COG3391 Uncharacterized conser 99.2 2.6E-09 5.6E-14 119.2 23.8 168 264-514 73-246 (381)
57 cd02999 PDI_a_ERp44_like PDIa 99.2 4E-11 8.7E-16 109.0 7.3 85 104-221 14-99 (100)
58 TIGR02740 TraF-like TraF-like 99.2 5E-11 1.1E-15 127.2 7.4 105 98-227 156-265 (271)
59 COG3391 Uncharacterized conser 99.1 5.2E-09 1.1E-13 116.8 23.4 180 266-526 117-302 (381)
60 KOG0910 Thioredoxin-like prote 99.1 1.6E-10 3.4E-15 111.8 8.8 86 107-227 60-149 (150)
61 cd02948 TRX_NDPK TRX domain, T 99.1 2.6E-10 5.6E-15 103.7 8.2 85 107-225 16-102 (102)
62 cd02951 SoxW SoxW family; SoxW 99.1 2.5E-10 5.5E-15 107.0 6.7 102 106-229 11-122 (125)
63 cd02953 DsbDgamma DsbD gamma f 99.0 4.7E-10 1E-14 101.7 7.9 89 106-222 9-103 (104)
64 cd03013 PRX5_like Peroxiredoxi 99.0 6E-10 1.3E-14 109.3 9.3 111 87-212 4-140 (155)
65 cd02956 ybbN ybbN protein fami 99.0 1E-09 2.2E-14 97.6 9.5 85 105-222 9-95 (96)
66 PF10282 Lactonase: Lactonase, 99.0 5.5E-08 1.2E-12 106.9 24.4 178 263-514 142-331 (345)
67 PRK10996 thioredoxin 2; Provis 99.0 1.3E-09 2.8E-14 105.0 9.7 87 107-225 51-138 (139)
68 PRK09381 trxA thioredoxin; Pro 99.0 1.4E-09 3E-14 99.4 9.0 88 107-226 20-108 (109)
69 PHA02278 thioredoxin-like prot 99.0 1.6E-09 3.5E-14 99.5 8.7 86 107-220 13-99 (103)
70 PF10282 Lactonase: Lactonase, 99.0 1.3E-07 2.9E-12 103.9 25.1 240 263-569 85-338 (345)
71 cd02963 TRX_DnaJ TRX domain, D 99.0 1.2E-09 2.6E-14 101.0 7.1 89 105-225 21-111 (111)
72 cd02954 DIM1 Dim1 family; Dim1 98.9 1.2E-09 2.6E-14 102.1 5.9 80 107-218 13-93 (114)
73 COG0386 BtuE Glutathione perox 98.9 1.1E-08 2.3E-13 99.1 10.8 129 91-228 8-162 (162)
74 PLN00410 U5 snRNP protein, DIM 98.9 1.2E-08 2.5E-13 99.0 10.9 91 107-229 22-123 (142)
75 PTZ00051 thioredoxin; Provisio 98.9 1.2E-08 2.6E-13 91.0 9.4 80 107-219 17-96 (98)
76 cd02994 PDI_a_TMX PDIa family, 98.8 1.4E-08 3E-13 91.4 8.3 84 106-223 15-100 (101)
77 PRK11028 6-phosphogluconolacto 98.8 6.2E-07 1.3E-11 97.1 22.3 172 266-507 81-258 (330)
78 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 9E-09 1.9E-13 92.8 6.3 83 106-220 16-99 (101)
79 KOG0907 Thioredoxin [Posttrans 98.8 2.5E-08 5.5E-13 92.2 8.4 85 107-224 20-104 (106)
80 PRK11028 6-phosphogluconolacto 98.7 9.6E-07 2.1E-11 95.7 21.2 179 264-513 125-312 (330)
81 cd02997 PDI_a_PDIR PDIa family 98.7 3E-08 6.4E-13 88.9 7.9 85 107-221 16-103 (104)
82 cd03002 PDI_a_MPD1_like PDI fa 98.7 3.4E-08 7.3E-13 89.7 8.3 86 107-222 17-108 (109)
83 cd02949 TRX_NTR TRX domain, no 98.7 5.3E-08 1.1E-12 87.5 9.4 83 107-222 12-96 (97)
84 TIGR01295 PedC_BrcD bacterioci 98.7 7.9E-08 1.7E-12 90.9 11.0 97 107-222 22-120 (122)
85 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 2.6E-08 5.5E-13 90.1 7.2 83 107-221 18-103 (104)
86 COG0450 AhpC Peroxiredoxin [Po 98.7 9.9E-08 2.1E-12 96.1 11.7 136 99-251 24-182 (194)
87 PF02630 SCO1-SenC: SCO1/SenC; 98.7 2.5E-08 5.4E-13 99.8 7.3 118 85-211 29-173 (174)
88 COG4257 Vgb Streptogramin lyas 98.7 6.4E-07 1.4E-11 94.2 17.9 192 265-510 62-265 (353)
89 PRK00293 dipZ thiol:disulfide 98.7 2.7E-08 5.9E-13 116.5 7.7 97 101-225 467-569 (571)
90 PF13098 Thioredoxin_2: Thiore 98.7 9.4E-09 2E-13 93.9 2.9 101 107-222 4-112 (112)
91 PTZ00443 Thioredoxin domain-co 98.7 1.1E-07 2.4E-12 99.0 10.9 91 107-230 51-143 (224)
92 cd02957 Phd_like Phosducin (Ph 98.7 1.1E-07 2.4E-12 88.0 9.9 73 108-213 24-96 (113)
93 TIGR01068 thioredoxin thioredo 98.7 1.3E-07 2.7E-12 83.8 9.7 87 107-225 13-100 (101)
94 cd03006 PDI_a_EFP1_N PDIa fami 98.7 5.3E-08 1.2E-12 91.0 7.4 83 107-221 28-112 (113)
95 cd03005 PDI_a_ERp46 PDIa famil 98.7 6.4E-08 1.4E-12 86.6 7.6 80 110-221 18-101 (102)
96 cd03000 PDI_a_TMX3 PDIa family 98.6 8E-08 1.7E-12 87.3 8.1 84 107-224 14-102 (104)
97 cd02959 ERp19 Endoplasmic reti 98.6 9E-09 1.9E-13 96.5 1.7 96 100-224 11-111 (117)
98 cd02984 TRX_PICOT TRX domain, 98.6 7.3E-08 1.6E-12 85.7 7.4 82 108-222 14-96 (97)
99 KOG2501 Thioredoxin, nucleored 98.6 5.2E-08 1.1E-12 95.3 6.9 105 91-208 15-131 (157)
100 cd02962 TMX2 TMX2 family; comp 98.6 1.4E-07 3.1E-12 92.6 8.4 80 106-211 45-126 (152)
101 cd02986 DLP Dim1 family, Dim1- 98.6 1.8E-07 4E-12 87.3 8.7 54 107-177 13-67 (114)
102 TIGR01126 pdi_dom protein disu 98.6 1.4E-07 3E-12 84.0 7.4 85 107-224 12-100 (102)
103 cd02993 PDI_a_APS_reductase PD 98.6 2.1E-07 4.5E-12 85.6 8.3 84 106-220 19-107 (109)
104 cd02965 HyaE HyaE family; HyaE 98.6 2.6E-07 5.7E-12 86.0 9.0 83 106-220 25-110 (111)
105 cd02987 Phd_like_Phd Phosducin 98.6 3.3E-07 7.1E-12 92.0 10.4 84 107-223 82-172 (175)
106 COG3118 Thioredoxin domain-con 98.5 1.1E-07 2.4E-12 101.1 6.7 88 106-228 41-132 (304)
107 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 0.00016 3.4E-09 75.1 29.3 74 266-352 32-106 (300)
108 COG3386 Gluconolactonase [Carb 98.5 6.8E-06 1.5E-10 89.5 19.2 133 260-432 106-250 (307)
109 TIGR02604 Piru_Ver_Nterm putat 98.5 5.8E-06 1.3E-10 91.9 19.0 124 263-430 12-177 (367)
110 cd02947 TRX_family TRX family; 98.5 7.3E-07 1.6E-11 76.4 9.1 83 108-222 10-92 (93)
111 PF00085 Thioredoxin: Thioredo 98.5 5.3E-07 1.1E-11 80.2 8.5 86 107-224 16-102 (103)
112 cd02998 PDI_a_ERp38 PDIa famil 98.5 5.1E-07 1.1E-11 80.7 8.2 84 107-221 17-104 (105)
113 cd03065 PDI_b_Calsequestrin_N 98.5 5.7E-07 1.2E-11 85.0 8.5 89 107-226 26-119 (120)
114 cd02989 Phd_like_TxnDC9 Phosdu 98.4 6.6E-07 1.4E-11 83.3 8.5 74 107-212 21-94 (113)
115 cd02975 PfPDO_like_N Pyrococcu 98.4 7.2E-07 1.6E-11 83.0 8.7 89 107-227 21-111 (113)
116 KOG1651 Glutathione peroxidase 98.4 1.3E-06 2.9E-11 85.7 10.3 130 91-228 17-171 (171)
117 PF01436 NHL: NHL repeat; Int 98.4 3.1E-07 6.6E-12 64.8 4.1 28 395-422 1-28 (28)
118 cd03001 PDI_a_P5 PDIa family, 98.4 7.9E-07 1.7E-11 79.6 7.9 84 107-222 17-102 (103)
119 COG2706 3-carboxymuconate cycl 98.4 7.8E-05 1.7E-09 81.1 24.4 233 264-561 88-328 (346)
120 cd02988 Phd_like_VIAF Phosduci 98.4 7.6E-07 1.6E-11 90.7 8.6 82 107-223 101-189 (192)
121 COG1999 Uncharacterized protei 98.4 3.8E-06 8.2E-11 86.6 13.2 130 90-228 49-206 (207)
122 KOG0855 Alkyl hydroperoxide re 98.4 1.6E-06 3.4E-11 85.0 9.1 127 86-225 67-208 (211)
123 PF01436 NHL: NHL repeat; Int 98.4 6.5E-07 1.4E-11 63.2 4.6 28 318-346 1-28 (28)
124 cd02995 PDI_a_PDI_a'_C PDIa fa 98.3 9.8E-07 2.1E-11 78.9 6.9 82 107-221 17-103 (104)
125 cd02996 PDI_a_ERp44 PDIa famil 98.3 9.4E-07 2E-11 80.7 6.8 83 107-221 17-107 (108)
126 cd02952 TRP14_like Human TRX-r 98.3 7.5E-07 1.6E-11 84.1 6.2 44 106-156 19-70 (119)
127 TIGR03866 PQQ_ABC_repeats PQQ- 98.3 0.00017 3.6E-09 74.9 23.7 169 266-515 116-288 (300)
128 cd02961 PDI_a_family Protein D 98.3 7.1E-07 1.5E-11 78.1 4.8 83 107-221 14-100 (101)
129 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00049 1.1E-08 76.4 27.3 121 276-437 12-149 (352)
130 TIGR00411 redox_disulf_1 small 98.2 4.9E-06 1.1E-10 71.5 8.4 80 110-225 1-81 (82)
131 PTZ00062 glutaredoxin; Provisi 98.2 4.2E-06 9.2E-11 86.0 9.2 78 109-227 18-95 (204)
132 PTZ00102 disulphide isomerase; 98.2 3.1E-06 6.7E-11 96.5 8.8 88 106-228 373-467 (477)
133 TIGR02604 Piru_Ver_Nterm putat 98.2 5.3E-05 1.2E-09 84.3 17.7 116 263-423 70-211 (367)
134 cd02992 PDI_a_QSOX PDIa family 98.2 3.3E-06 7.2E-11 78.6 6.4 55 108-177 19-77 (114)
135 COG0526 TrxA Thiol-disulfide i 98.2 7E-06 1.5E-10 71.8 8.1 47 102-155 26-73 (127)
136 KOG1214 Nidogen and related ba 98.2 2.3E-05 5.1E-10 91.6 14.0 169 261-516 1064-1235(1289)
137 TIGR00424 APS_reduc 5'-adenyly 98.1 8.4E-06 1.8E-10 93.1 9.9 90 105-225 368-462 (463)
138 COG3386 Gluconolactonase [Carb 98.1 0.00012 2.7E-09 79.8 18.4 155 267-507 27-193 (307)
139 KOG1520 Predicted alkaloid syn 98.1 3.7E-05 8E-10 84.7 13.9 192 263-513 52-255 (376)
140 KOG0908 Thioredoxin-like prote 98.1 1.9E-05 4.2E-10 82.1 10.5 97 103-235 16-115 (288)
141 cd02982 PDI_b'_family Protein 98.1 1.1E-05 2.4E-10 72.4 7.7 89 107-225 11-102 (103)
142 PF00837 T4_deiodinase: Iodoth 98.1 9.3E-06 2E-10 84.6 7.7 144 74-225 65-236 (237)
143 cd02955 SSP411 TRX domain, SSP 98.0 2.7E-05 5.9E-10 74.1 9.7 83 103-209 10-97 (124)
144 COG4257 Vgb Streptogramin lyas 98.0 0.00024 5.1E-09 75.3 17.0 177 265-515 104-313 (353)
145 TIGR03118 PEPCTERM_chp_1 conse 98.0 0.00018 3.9E-09 77.4 16.4 132 273-444 148-299 (336)
146 KOG2792 Putative cytochrome C 98.0 6.9E-05 1.5E-09 78.4 12.6 131 88-227 119-276 (280)
147 COG2706 3-carboxymuconate cycl 98.0 0.001 2.2E-08 72.6 21.9 175 266-514 146-330 (346)
148 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.00089 1.9E-08 74.4 21.4 89 265-359 47-146 (352)
149 PLN02309 5'-adenylylsulfate re 98.0 3.1E-05 6.8E-10 88.4 10.1 89 106-225 363-456 (457)
150 KOG1214 Nidogen and related ba 97.9 0.00014 3E-09 85.3 14.7 158 267-509 1027-1188(1289)
151 PF00255 GSHPx: Glutathione pe 97.9 3.7E-05 7.9E-10 71.5 7.5 84 90-182 3-91 (108)
152 TIGR00412 redox_disulf_2 small 97.9 2.1E-05 4.6E-10 68.1 5.2 72 112-222 2-75 (76)
153 TIGR01130 ER_PDI_fam protein d 97.9 2.9E-05 6.4E-10 87.5 7.9 89 107-227 17-110 (462)
154 PF06977 SdiA-regulated: SdiA- 97.8 0.00029 6.3E-09 74.7 14.2 124 268-422 121-247 (248)
155 TIGR02187 GlrX_arch Glutaredox 97.8 0.00011 2.4E-09 75.8 10.2 85 104-223 129-213 (215)
156 cd02958 UAS UAS family; UAS is 97.8 0.00016 3.4E-09 67.0 10.2 94 102-227 11-112 (114)
157 KOG1520 Predicted alkaloid syn 97.6 0.00025 5.4E-09 78.3 10.4 137 265-428 115-252 (376)
158 KOG0852 Alkyl hydroperoxide re 97.6 0.0003 6.4E-09 70.0 9.6 110 92-214 17-145 (196)
159 PF03088 Str_synth: Strictosid 97.6 0.00034 7.3E-09 62.9 9.0 68 323-425 2-87 (89)
160 PF07995 GSDH: Glucose / Sorbo 97.6 0.0016 3.5E-08 71.7 15.7 81 264-351 1-92 (331)
161 PF02239 Cytochrom_D1: Cytochr 97.6 0.0078 1.7E-07 67.5 21.3 120 267-427 39-160 (369)
162 PTZ00102 disulphide isomerase; 97.5 0.00019 4.1E-09 81.9 8.3 88 107-227 48-139 (477)
163 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.0061 1.3E-07 65.9 18.8 186 257-510 15-282 (336)
164 TIGR01130 ER_PDI_fam protein d 97.5 0.00029 6.3E-09 79.5 9.1 86 107-226 363-454 (462)
165 TIGR02187 GlrX_arch Glutaredox 97.5 0.00041 8.8E-09 71.7 9.3 93 106-228 17-113 (215)
166 cd02960 AGR Anterior Gradient 97.5 7.9E-05 1.7E-09 71.5 3.6 34 90-123 5-38 (130)
167 PF06977 SdiA-regulated: SdiA- 97.4 0.025 5.3E-07 60.2 21.3 197 263-531 20-224 (248)
168 PF02239 Cytochrom_D1: Cytochr 97.4 0.0091 2E-07 66.9 18.6 106 276-430 5-113 (369)
169 COG4232 Thiol:disulfide interc 97.3 0.00034 7.4E-09 80.9 6.6 94 103-225 469-567 (569)
170 PF07995 GSDH: Glucose / Sorbo 97.3 0.0051 1.1E-07 67.8 15.2 130 260-421 176-331 (331)
171 PHA02125 thioredoxin-like prot 97.3 0.00065 1.4E-08 58.5 6.5 32 112-155 2-33 (75)
172 cd03026 AhpF_NTD_C TRX-GRX-lik 97.3 0.0016 3.4E-08 58.4 8.9 79 103-217 7-85 (89)
173 PF03088 Str_synth: Strictosid 97.2 0.0019 4.1E-08 58.1 8.6 69 400-508 2-88 (89)
174 cd02973 TRX_GRX_like Thioredox 97.2 0.0013 2.9E-08 54.6 7.1 39 111-156 2-40 (67)
175 PF05096 Glu_cyclase_2: Glutam 97.1 0.1 2.2E-06 55.9 21.9 160 265-513 45-209 (264)
176 PF09695 YtfJ_HI0045: Bacteria 97.0 0.016 3.4E-07 57.3 13.9 120 97-225 26-157 (160)
177 TIGR03606 non_repeat_PQQ dehyd 97.0 0.046 1E-06 62.8 19.4 82 262-349 27-124 (454)
178 TIGR02196 GlrX_YruB Glutaredox 96.9 0.0049 1.1E-07 51.0 7.8 72 112-222 2-73 (74)
179 PF13360 PQQ_2: PQQ-like domai 96.8 0.19 4.1E-06 51.2 20.9 111 271-429 32-144 (238)
180 COG2077 Tpx Peroxiredoxin [Pos 96.7 0.014 3.1E-07 57.1 10.7 110 87-209 23-147 (158)
181 PRK02888 nitrous-oxide reducta 96.7 0.019 4.1E-07 67.8 13.2 83 319-426 321-405 (635)
182 KOG4499 Ca2+-binding protein R 96.7 0.02 4.3E-07 60.0 11.8 99 318-441 157-258 (310)
183 COG2133 Glucose/sorbosone dehy 96.5 0.038 8.3E-07 62.3 14.0 133 259-425 233-397 (399)
184 smart00594 UAS UAS domain. 96.5 0.0095 2.1E-07 56.1 7.7 93 104-222 23-121 (122)
185 cd01659 TRX_superfamily Thiore 96.4 0.0093 2E-07 45.9 6.2 38 112-156 1-38 (69)
186 PF04592 SelP_N: Selenoprotein 96.4 0.0087 1.9E-07 62.5 7.6 116 100-228 18-148 (238)
187 PF13899 Thioredoxin_7: Thiore 96.3 0.0052 1.1E-07 53.6 4.3 46 104-156 13-62 (82)
188 TIGR02200 GlrX_actino Glutared 96.2 0.017 3.7E-07 48.7 7.3 22 112-140 2-23 (77)
189 cd00200 WD40 WD40 domain, foun 96.1 0.99 2.2E-05 44.8 20.6 112 268-428 55-168 (289)
190 PF13728 TraF: F plasmid trans 96.1 0.015 3.2E-07 60.5 7.6 98 100-222 112-214 (215)
191 PF03022 MRJP: Major royal jel 96.1 0.47 1E-05 51.5 19.4 83 268-357 4-104 (287)
192 cd00200 WD40 WD40 domain, foun 96.1 0.9 1.9E-05 45.1 20.1 115 266-429 95-211 (289)
193 PF05787 DUF839: Bacterial pro 96.1 0.071 1.5E-06 62.5 13.6 86 316-418 347-459 (524)
194 TIGR03032 conserved hypothetic 96.0 0.42 9E-06 52.4 18.2 191 279-515 20-239 (335)
195 PF05096 Glu_cyclase_2: Glutam 95.9 0.43 9.2E-06 51.2 17.1 167 266-505 91-259 (264)
196 PRK05137 tolB translocation pr 95.8 2.7 5.9E-05 47.9 24.9 117 269-433 206-330 (435)
197 PF13449 Phytase-like: Esteras 95.7 0.19 4.1E-06 55.3 14.4 89 267-356 22-127 (326)
198 KOG1215 Low-density lipoprotei 95.6 0.2 4.4E-06 62.2 15.6 163 261-510 476-642 (877)
199 PRK03629 tolB translocation pr 95.6 1.6 3.4E-05 49.9 21.7 116 269-432 247-370 (429)
200 PRK04922 tolB translocation pr 95.5 1 2.2E-05 51.3 19.9 116 269-432 208-331 (433)
201 TIGR02180 GRX_euk Glutaredoxin 95.5 0.027 5.9E-07 48.4 5.5 47 112-173 1-48 (84)
202 PRK03629 tolB translocation pr 95.5 1.6 3.5E-05 49.8 21.2 116 269-432 203-326 (429)
203 PRK04792 tolB translocation pr 95.4 1.4 3E-05 50.7 20.7 116 269-432 222-345 (448)
204 TIGR02800 propeller_TolB tol-p 95.4 1.8 3.9E-05 48.3 20.9 116 269-432 238-361 (417)
205 PRK04922 tolB translocation pr 95.3 1.7 3.8E-05 49.4 20.9 115 269-431 252-374 (433)
206 PRK00178 tolB translocation pr 95.3 2.1 4.5E-05 48.4 21.4 117 268-432 202-326 (430)
207 TIGR02739 TraF type-F conjugat 95.3 0.055 1.2E-06 57.8 8.0 104 100-229 142-251 (256)
208 KOG1215 Low-density lipoprotei 95.2 0.75 1.6E-05 57.3 18.9 163 265-512 437-603 (877)
209 PF13449 Phytase-like: Esteras 95.2 0.43 9.4E-06 52.5 15.1 133 266-425 86-251 (326)
210 PF14595 Thioredoxin_9: Thiore 95.2 0.015 3.2E-07 55.8 3.1 80 103-211 36-116 (129)
211 KOG0291 WD40-repeat-containing 95.0 1.2 2.5E-05 53.4 18.1 177 268-517 439-623 (893)
212 PTZ00421 coronin; Provisional 95.0 9.7 0.00021 44.6 27.0 115 268-429 79-202 (493)
213 PRK02888 nitrous-oxide reducta 95.0 0.68 1.5E-05 55.1 16.4 32 396-427 321-353 (635)
214 COG2133 Glucose/sorbosone dehy 95.0 1.3 2.9E-05 50.2 18.1 149 264-427 176-352 (399)
215 PTZ00420 coronin; Provisional 95.0 8.4 0.00018 46.0 25.5 119 267-430 77-202 (568)
216 smart00135 LY Low-density lipo 94.9 0.064 1.4E-06 40.0 5.4 35 317-351 7-41 (43)
217 PRK04792 tolB translocation pr 94.9 2.7 5.9E-05 48.3 21.0 115 270-432 267-389 (448)
218 PRK02889 tolB translocation pr 94.9 2.3 4.9E-05 48.5 20.2 116 269-432 200-323 (427)
219 KOG0191 Thioredoxin/protein di 94.8 0.071 1.5E-06 59.9 7.6 90 107-228 46-136 (383)
220 PF05787 DUF839: Bacterial pro 94.8 0.34 7.3E-06 57.0 13.3 80 261-341 346-458 (524)
221 KOG4499 Ca2+-binding protein R 94.8 0.13 2.8E-06 54.1 8.6 82 263-353 156-245 (310)
222 PRK13703 conjugal pilus assemb 94.7 0.11 2.4E-06 55.3 8.1 103 101-229 136-244 (248)
223 TIGR03606 non_repeat_PQQ dehyd 94.6 0.79 1.7E-05 53.0 15.5 81 317-425 28-124 (454)
224 smart00135 LY Low-density lipo 94.6 0.078 1.7E-06 39.6 5.0 35 263-297 7-41 (43)
225 PF03022 MRJP: Major royal jel 94.5 0.82 1.8E-05 49.6 14.8 85 321-435 3-106 (287)
226 cd03007 PDI_a_ERp29_N PDIa fam 94.5 0.23 5E-06 47.0 9.1 61 107-181 17-84 (116)
227 KOG0266 WD40 repeat-containing 94.5 3.5 7.6E-05 47.6 20.5 115 266-429 205-322 (456)
228 KOG0266 WD40 repeat-containing 94.4 2.3 5E-05 49.0 18.9 149 237-435 217-374 (456)
229 PF02333 Phytase: Phytase; In 94.4 0.93 2E-05 51.2 15.0 120 263-426 154-291 (381)
230 PRK05137 tolB translocation pr 94.3 4.7 0.0001 46.0 20.9 75 270-356 251-329 (435)
231 TIGR02800 propeller_TolB tol-p 94.3 3.9 8.4E-05 45.6 20.0 74 270-356 195-273 (417)
232 COG3204 Uncharacterized protei 94.2 0.72 1.6E-05 50.1 13.0 125 268-423 184-310 (316)
233 cd02991 UAS_ETEA UAS family, E 94.2 0.22 4.7E-06 47.0 8.2 96 102-228 11-115 (116)
234 KOG1446 Histone H3 (Lys4) meth 94.1 11 0.00023 41.3 24.5 79 265-356 15-96 (311)
235 KOG1446 Histone H3 (Lys4) meth 94.0 2.3 5E-05 46.3 16.3 133 263-435 139-272 (311)
236 PRK00178 tolB translocation pr 94.0 8.2 0.00018 43.6 21.9 75 270-356 248-326 (430)
237 PRK02889 tolB translocation pr 93.9 7.3 0.00016 44.4 21.4 117 269-432 244-367 (427)
238 PF13360 PQQ_2: PQQ-like domai 93.7 4.1 9E-05 41.3 17.3 122 264-429 112-234 (238)
239 PRK01742 tolB translocation pr 93.6 5.1 0.00011 45.6 19.5 114 268-429 207-328 (429)
240 KOG0291 WD40-repeat-containing 93.5 4.6 0.0001 48.6 18.8 130 260-437 346-478 (893)
241 KOG0854 Alkyl hydroperoxide re 93.4 0.67 1.5E-05 46.7 10.2 125 98-229 21-171 (224)
242 KOG0190 Protein disulfide isom 93.4 0.15 3.2E-06 59.1 6.5 84 108-223 42-129 (493)
243 PRK01742 tolB translocation pr 93.3 5.9 0.00013 45.1 19.4 106 280-432 173-287 (429)
244 PF00058 Ldl_recept_b: Low-den 93.2 0.3 6.4E-06 37.7 5.9 27 331-357 1-28 (42)
245 COG3204 Uncharacterized protei 93.1 5.7 0.00012 43.4 17.4 72 267-350 88-159 (316)
246 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.34 7.3E-06 36.2 6.1 40 275-327 2-42 (42)
247 TIGR03032 conserved hypothetic 93.1 2.1 4.6E-05 47.1 14.3 41 317-359 201-241 (335)
248 PRK11200 grxA glutaredoxin 1; 93.0 0.24 5.2E-06 43.4 5.9 38 112-156 3-40 (85)
249 PTZ00420 coronin; Provisional 92.9 26 0.00057 41.9 24.8 76 267-356 128-205 (568)
250 TIGR02276 beta_rpt_yvtn 40-res 92.6 0.58 1.3E-05 34.9 6.8 29 329-357 2-30 (42)
251 TIGR03300 assembly_YfgL outer 92.6 8.8 0.00019 42.5 19.0 107 269-429 60-167 (377)
252 KOG0315 G-protein beta subunit 92.5 15 0.00033 39.3 19.0 146 278-513 11-160 (311)
253 TIGR03300 assembly_YfgL outer 92.1 19 0.00041 39.8 21.0 109 276-429 190-301 (377)
254 PRK11138 outer membrane biogen 91.8 18 0.00039 40.5 20.6 109 276-429 205-316 (394)
255 PRK11138 outer membrane biogen 91.8 9.1 0.0002 42.9 18.1 101 276-429 256-357 (394)
256 COG3211 PhoX Predicted phospha 91.7 1.4 3E-05 51.6 11.4 81 259-340 411-520 (616)
257 PRK11509 hydrogenase-1 operon 91.7 0.51 1.1E-05 45.7 6.8 88 112-231 37-129 (132)
258 PRK04043 tolB translocation pr 91.4 21 0.00045 41.0 20.6 114 271-432 194-316 (419)
259 cd02976 NrdH NrdH-redoxin (Nrd 91.1 0.55 1.2E-05 38.5 5.7 33 112-156 2-34 (73)
260 KOG0279 G protein beta subunit 90.9 21 0.00046 38.8 18.2 189 266-512 65-267 (315)
261 PRK04043 tolB translocation pr 90.8 30 0.00064 39.7 21.1 74 271-356 239-316 (419)
262 KOG0190 Protein disulfide isom 90.7 0.53 1.2E-05 54.6 6.9 33 107-146 383-415 (493)
263 PLN00181 protein SPA1-RELATED; 90.6 36 0.00077 42.1 23.0 121 268-428 487-609 (793)
264 KOG1273 WD40 repeat protein [G 90.5 32 0.0007 38.1 22.6 114 269-428 70-186 (405)
265 PF01731 Arylesterase: Arylest 90.4 0.44 9.5E-06 42.8 4.7 33 317-349 52-84 (86)
266 PRK01029 tolB translocation pr 90.1 39 0.00085 38.7 21.4 89 400-529 331-424 (428)
267 PF05176 ATP-synt_10: ATP10 pr 89.9 1.8 4E-05 46.3 9.7 127 82-223 100-247 (252)
268 cd03023 DsbA_Com1_like DsbA fa 89.9 0.59 1.3E-05 44.2 5.5 42 107-155 4-45 (154)
269 KOG0279 G protein beta subunit 89.8 34 0.00073 37.3 22.4 258 268-611 19-285 (315)
270 KOG0315 G-protein beta subunit 89.6 25 0.00054 37.8 17.3 77 317-427 122-199 (311)
271 PF05988 DUF899: Bacterial pro 89.5 3.1 6.8E-05 43.3 10.6 98 99-209 56-172 (211)
272 KOG4441 Proteins containing BT 89.4 25 0.00055 42.0 19.7 156 268-515 326-507 (571)
273 PF06433 Me-amine-dh_H: Methyl 89.3 26 0.00056 39.2 18.2 113 276-429 2-130 (342)
274 PTZ00421 coronin; Provisional 89.2 48 0.001 39.0 21.5 75 321-430 78-161 (493)
275 KOG0281 Beta-TrCP (transducin 89.0 2.6 5.6E-05 46.6 10.0 158 270-509 241-430 (499)
276 PF08662 eIF2A: Eukaryotic tra 89.0 15 0.00032 37.5 15.2 71 268-352 63-136 (194)
277 KOG0318 WD40 repeat stress pro 88.9 7 0.00015 45.4 13.7 146 236-430 375-522 (603)
278 PF00058 Ldl_recept_b: Low-den 88.9 1 2.3E-05 34.7 5.2 40 277-328 1-42 (42)
279 PF03190 Thioredox_DsbH: Prote 88.9 0.24 5.2E-06 49.5 2.0 33 91-123 20-52 (163)
280 PF02114 Phosducin: Phosducin; 88.7 2.1 4.6E-05 46.1 9.2 90 106-228 144-236 (265)
281 PF02333 Phytase: Phytase; In 88.7 33 0.00072 39.0 18.9 84 397-516 209-301 (381)
282 cd02066 GRX_family Glutaredoxi 88.6 1.2 2.6E-05 36.2 5.8 56 112-185 2-58 (72)
283 KOG0911 Glutaredoxin-related p 88.3 0.32 7E-06 50.7 2.6 90 107-229 16-105 (227)
284 KOG0292 Vesicle coat complex C 88.2 7.8 0.00017 47.6 14.0 120 268-437 13-135 (1202)
285 PF06110 DUF953: Eukaryotic pr 88.1 0.75 1.6E-05 43.8 4.7 44 106-156 17-68 (119)
286 PF01731 Arylesterase: Arylest 87.7 0.81 1.8E-05 41.1 4.4 33 262-294 51-83 (86)
287 KOG0285 Pleiotropic regulator 87.1 57 0.0012 36.7 19.8 208 261-511 148-393 (460)
288 KOG0281 Beta-TrCP (transducin 86.8 4.7 0.0001 44.7 10.3 173 275-513 205-394 (499)
289 PF14269 Arylsulfotran_2: Aryl 86.6 20 0.00043 39.3 15.4 132 267-429 146-293 (299)
290 KOG3425 Uncharacterized conser 86.0 1.6 3.5E-05 41.5 5.5 43 107-156 24-75 (128)
291 PLN00181 protein SPA1-RELATED; 85.8 77 0.0017 39.2 21.6 112 269-428 537-651 (793)
292 KOG0912 Thiol-disulfide isomer 85.8 1.4 3.1E-05 48.0 5.7 41 108-156 13-58 (375)
293 COG3211 PhoX Predicted phospha 85.4 4.4 9.5E-05 47.7 9.8 99 315-416 413-520 (616)
294 PF00462 Glutaredoxin: Glutare 85.2 2.2 4.7E-05 34.7 5.5 54 112-183 1-55 (60)
295 PF14269 Arylsulfotran_2: Aryl 84.9 66 0.0014 35.3 20.1 41 395-435 143-183 (299)
296 KOG0289 mRNA splicing factor [ 83.4 63 0.0014 37.2 17.3 113 268-426 307-420 (506)
297 KOG0318 WD40 repeat stress pro 83.3 1E+02 0.0022 36.3 21.7 150 266-430 192-355 (603)
298 PF13911 AhpC-TSA_2: AhpC/TSA 82.9 1.3 2.9E-05 40.9 3.6 42 146-194 13-54 (115)
299 KOG0772 Uncharacterized conser 82.2 76 0.0016 37.3 17.5 124 276-429 225-351 (641)
300 KOG0319 WD40-repeat-containing 81.5 58 0.0013 39.6 16.9 131 264-440 19-150 (775)
301 KOG2106 Uncharacterized conser 81.4 1.2E+02 0.0026 35.7 19.4 133 317-521 328-460 (626)
302 KOG0283 WD40 repeat-containing 80.9 36 0.00078 41.5 15.2 120 268-428 413-535 (712)
303 PHA02713 hypothetical protein; 80.5 70 0.0015 38.1 17.7 31 400-431 458-495 (557)
304 KOG0263 Transcription initiati 80.3 14 0.00031 44.6 11.6 111 264-425 535-649 (707)
305 COG3823 Glutamine cyclotransfe 80.1 34 0.00073 36.1 12.7 68 266-349 47-119 (262)
306 PRK01029 tolB translocation pr 79.9 1.2E+02 0.0026 34.8 22.9 44 484-528 334-379 (428)
307 COG4946 Uncharacterized protei 79.8 1.3E+02 0.0028 35.2 21.2 68 276-349 235-305 (668)
308 cd03418 GRX_GRXb_1_3_like Glut 79.7 4.6 0.0001 33.8 5.6 53 112-182 2-56 (75)
309 KOG0310 Conserved WD40 repeat- 79.5 38 0.00083 39.2 14.1 70 322-426 114-185 (487)
310 KOG1274 WD40 repeat protein [G 79.4 84 0.0018 39.1 17.6 117 265-435 14-136 (933)
311 KOG1731 FAD-dependent sulfhydr 79.2 0.82 1.8E-05 53.5 1.0 58 109-181 58-120 (606)
312 COG4946 Uncharacterized protei 79.0 62 0.0013 37.7 15.4 38 395-432 401-438 (668)
313 cd03419 GRX_GRXh_1_2_like Glut 78.8 4.2 9.1E-05 34.6 5.1 56 112-183 2-59 (82)
314 PHA03050 glutaredoxin; Provisi 78.7 2.8 6.1E-05 39.0 4.2 50 112-174 15-64 (108)
315 COG5276 Uncharacterized conser 78.6 92 0.002 34.5 15.9 95 248-357 109-207 (370)
316 TIGR02183 GRXA Glutaredoxin, G 78.6 5.5 0.00012 35.1 5.9 37 112-155 2-38 (86)
317 KOG0640 mRNA cleavage stimulat 78.5 63 0.0014 35.8 14.7 115 269-427 177-293 (430)
318 PHA02713 hypothetical protein; 78.2 1.6E+02 0.0034 35.2 20.4 75 268-357 297-383 (557)
319 TIGR02181 GRX_bact Glutaredoxi 77.1 4.4 9.4E-05 34.6 4.7 21 113-140 2-22 (79)
320 KOG0286 G-protein beta subunit 76.8 95 0.0021 34.2 15.4 124 268-437 190-315 (343)
321 KOG0263 Transcription initiati 76.5 77 0.0017 38.6 16.0 102 399-509 539-651 (707)
322 KOG0272 U4/U6 small nuclear ri 74.9 36 0.00079 38.8 12.1 161 264-512 261-423 (459)
323 PF06433 Me-amine-dh_H: Methyl 74.5 18 0.0004 40.4 9.8 80 266-359 236-331 (342)
324 PF14339 DUF4394: Domain of un 74.0 1.3E+02 0.0028 32.2 17.3 131 268-432 30-171 (236)
325 smart00284 OLF Olfactomedin-li 72.6 1.5E+02 0.0032 32.1 18.7 97 330-447 83-189 (255)
326 PF06739 SBBP: Beta-propeller 71.2 3.3 7.2E-05 31.4 2.2 21 396-416 13-33 (38)
327 PF07433 DUF1513: Protein of u 71.1 1.7E+02 0.0038 32.4 22.4 75 267-351 7-87 (305)
328 KOG0296 Angio-associated migra 71.0 1.9E+02 0.0041 32.8 19.2 121 268-437 68-190 (399)
329 COG4312 Uncharacterized protei 70.8 11 0.00024 39.5 6.5 84 99-193 62-152 (247)
330 PF13192 Thioredoxin_3: Thiore 70.7 41 0.00088 28.8 9.2 70 116-223 6-76 (76)
331 KOG0293 WD40 repeat-containing 70.5 63 0.0014 37.0 12.6 115 265-428 313-428 (519)
332 COG3823 Glutamine cyclotransfe 70.1 13 0.00028 39.1 6.7 62 276-338 185-248 (262)
333 KOG1274 WD40 repeat protein [G 69.9 1.5E+02 0.0032 37.2 16.4 113 269-433 61-176 (933)
334 KOG0303 Actin-binding protein 69.8 43 0.00093 38.1 11.1 146 270-438 137-287 (472)
335 cd00216 PQQ_DH Dehydrogenases 69.3 2.3E+02 0.005 33.1 19.0 176 270-528 222-445 (488)
336 PF13462 Thioredoxin_4: Thiore 69.3 8.1 0.00018 37.0 5.1 50 100-156 4-56 (162)
337 KOG0288 WD40 repeat protein Ti 68.9 1.5E+02 0.0033 34.0 15.2 134 247-435 293-427 (459)
338 TIGR02194 GlrX_NrdH Glutaredox 68.8 11 0.00024 31.8 5.2 53 113-184 2-55 (72)
339 PRK10877 protein disulfide iso 68.7 16 0.00034 38.6 7.4 106 107-225 106-230 (232)
340 KOG4378 Nuclear protein COP1 [ 68.0 50 0.0011 38.6 11.4 70 320-426 209-281 (673)
341 cd03020 DsbA_DsbC_DsbG DsbA fa 67.4 17 0.00037 36.8 7.1 27 106-139 75-101 (197)
342 KOG3881 Uncharacterized conser 66.9 67 0.0015 36.4 11.9 120 260-427 195-322 (412)
343 KOG0272 U4/U6 small nuclear ri 66.2 56 0.0012 37.4 11.2 120 268-436 307-429 (459)
344 KOG0308 Conserved WD40 repeat- 65.9 61 0.0013 39.0 11.8 125 266-426 119-244 (735)
345 PF14583 Pectate_lyase22: Olig 65.7 2.3E+02 0.005 32.5 16.1 69 278-359 50-120 (386)
346 KOG0284 Polyadenylation factor 65.4 23 0.0005 40.2 8.0 130 241-425 163-294 (464)
347 KOG1539 WD repeat protein [Gen 65.2 79 0.0017 39.0 12.8 32 398-429 579-610 (910)
348 KOG0310 Conserved WD40 repeat- 63.8 66 0.0014 37.3 11.4 114 321-510 71-187 (487)
349 KOG0316 Conserved WD40 repeat- 63.5 1.2E+02 0.0027 32.5 12.4 107 276-429 70-177 (307)
350 PHA02790 Kelch-like protein; P 63.5 2.9E+02 0.0063 32.2 18.6 66 330-432 362-430 (480)
351 KOG0316 Conserved WD40 repeat- 63.1 1E+02 0.0023 33.1 11.8 62 341-437 39-101 (307)
352 COG2143 Thioredoxin-related pr 63.0 40 0.00087 33.9 8.3 98 105-227 39-150 (182)
353 COG3054 Predicted transcriptio 62.8 15 0.00033 36.4 5.4 116 99-225 50-179 (184)
354 PF05935 Arylsulfotrans: Aryls 62.5 3.1E+02 0.0067 32.1 18.2 127 286-418 223-370 (477)
355 KOG0772 Uncharacterized conser 62.0 1.5E+02 0.0033 35.0 13.8 119 270-426 274-395 (641)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.5 3.4E+02 0.0073 32.2 17.8 24 406-429 471-494 (527)
357 PF13778 DUF4174: Domain of un 61.4 92 0.002 29.4 10.3 34 196-229 82-115 (118)
358 TIGR00995 3a0901s06TIC22 chlor 61.3 55 0.0012 35.6 9.8 134 64-229 64-218 (270)
359 KOG0278 Serine/threonine kinas 61.1 1.3E+02 0.0029 32.5 12.3 72 319-424 222-296 (334)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 60.7 1.6E+02 0.0035 34.9 14.6 74 276-354 69-143 (527)
361 TIGR02190 GlrX-dom Glutaredoxi 60.5 17 0.00036 31.4 4.8 57 110-185 8-65 (79)
362 cd03019 DsbA_DsbA DsbA family, 60.2 14 0.00029 36.1 4.7 40 107-153 14-54 (178)
363 KOG0268 Sof1-like rRNA process 59.7 25 0.00054 39.5 6.9 125 259-430 180-307 (433)
364 PRK10329 glutaredoxin-like pro 59.4 24 0.00052 30.9 5.7 33 112-156 3-35 (81)
365 KOG0191 Thioredoxin/protein di 59.1 15 0.00032 41.4 5.4 39 108-153 162-203 (383)
366 cd03027 GRX_DEP Glutaredoxin ( 59.0 27 0.00058 29.4 5.7 51 114-182 5-56 (73)
367 PHA03098 kelch-like protein; P 58.9 3.5E+02 0.0076 31.6 19.0 27 330-356 389-421 (534)
368 KOG0282 mRNA splicing factor [ 58.5 48 0.001 38.5 9.1 107 274-429 224-334 (503)
369 KOG0278 Serine/threonine kinas 58.2 2.8E+02 0.006 30.2 15.4 99 276-428 154-257 (334)
370 PF05935 Arylsulfotrans: Aryls 56.9 95 0.0021 36.2 11.7 91 266-357 272-403 (477)
371 TIGR03143 AhpF_homolog putativ 56.4 49 0.0011 39.3 9.3 82 105-222 473-554 (555)
372 KOG2055 WD40 repeat protein [G 55.8 2.5E+02 0.0055 32.7 14.1 101 399-521 348-448 (514)
373 COG4247 Phy 3-phytase (myo-ino 55.6 3.1E+02 0.0067 30.0 17.4 108 281-426 118-235 (364)
374 KOG0914 Thioredoxin-like prote 55.2 12 0.00026 39.3 3.5 43 107-156 143-187 (265)
375 KOG0271 Notchless-like WD40 re 55.0 1.8E+02 0.004 33.2 12.6 71 322-428 119-190 (480)
376 KOG3567 Peptidylglycine alpha- 54.3 44 0.00095 38.7 7.9 138 259-432 162-305 (501)
377 KOG0641 WD40 repeat protein [G 54.1 3E+02 0.0066 29.4 16.6 71 330-428 193-264 (350)
378 COG5276 Uncharacterized conser 53.2 89 0.0019 34.6 9.6 101 272-419 219-323 (370)
379 KOG1036 Mitotic spindle checkp 52.4 2.1E+02 0.0046 31.7 12.3 61 276-350 65-125 (323)
380 KOG0303 Actin-binding protein 52.2 2.1E+02 0.0046 32.8 12.6 32 399-430 177-208 (472)
381 TIGR00365 monothiol glutaredox 51.1 41 0.00088 30.5 5.9 27 107-140 10-40 (97)
382 KOG0296 Angio-associated migra 50.9 4.2E+02 0.0092 30.1 19.1 66 276-355 159-226 (399)
383 PRK15317 alkyl hydroperoxide r 49.2 73 0.0016 37.4 9.2 85 103-223 111-195 (517)
384 KOG0274 Cdc4 and related F-box 48.9 5.4E+02 0.012 30.8 18.1 146 277-513 218-365 (537)
385 KOG1539 WD repeat protein [Gen 48.7 2.8E+02 0.0061 34.6 13.7 31 321-352 496-526 (910)
386 cd00307 RuBisCO_small_like Rib 48.6 23 0.00049 31.9 3.7 39 114-154 27-70 (84)
387 KOG4378 Nuclear protein COP1 [ 47.9 57 0.0012 38.1 7.5 69 268-351 212-282 (673)
388 KOG3567 Peptidylglycine alpha- 47.3 18 0.00039 41.7 3.6 37 260-297 462-498 (501)
389 KOG0646 WD40 repeat protein [G 47.2 3.5E+02 0.0075 31.6 13.5 30 395-424 123-152 (476)
390 cd02977 ArsC_family Arsenate R 46.9 52 0.0011 29.8 6.0 63 114-191 3-65 (105)
391 TIGR02189 GlrX-like_plant Glut 46.8 41 0.00088 30.6 5.2 22 112-140 10-31 (99)
392 KOG0282 mRNA splicing factor [ 46.8 63 0.0014 37.5 7.7 74 320-427 301-374 (503)
393 KOG0973 Histone transcription 46.4 5.9E+02 0.013 32.5 16.3 75 269-357 134-210 (942)
394 KOG0319 WD40-repeat-containing 46.4 2.2E+02 0.0049 34.9 12.3 73 324-430 25-97 (775)
395 KOG0271 Notchless-like WD40 re 45.0 5.4E+02 0.012 29.6 14.8 119 268-430 119-240 (480)
396 PRK11657 dsbG disulfide isomer 43.1 46 0.00099 35.5 5.7 31 106-143 115-145 (251)
397 KOG0285 Pleiotropic regulator 43.0 5.6E+02 0.012 29.3 14.3 77 317-429 150-227 (460)
398 KOG4441 Proteins containing BT 42.9 2.9E+02 0.0063 33.2 12.9 118 321-514 325-459 (571)
399 PRK10638 glutaredoxin 3; Provi 42.6 61 0.0013 28.0 5.5 51 114-182 6-57 (83)
400 KOG0292 Vesicle coat complex C 42.5 8.4E+02 0.018 31.1 17.1 46 688-733 607-652 (1202)
401 KOG2110 Uncharacterized conser 42.4 5.7E+02 0.012 29.2 18.9 73 322-427 177-250 (391)
402 cd03028 GRX_PICOT_like Glutare 42.4 65 0.0014 28.5 5.8 28 107-141 6-37 (90)
403 cd02972 DsbA_family DsbA famil 41.9 33 0.00071 29.1 3.7 37 112-155 1-38 (98)
404 PHA03098 kelch-like protein; P 41.7 6.3E+02 0.014 29.5 22.6 26 406-431 389-420 (534)
405 KOG4277 Uncharacterized conser 41.4 28 0.0006 38.2 3.7 29 110-145 45-73 (468)
406 KOG0295 WD40 repeat-containing 41.0 1.3E+02 0.0029 33.9 8.8 64 331-429 304-368 (406)
407 COG0695 GrxC Glutaredoxin and 40.7 71 0.0015 27.9 5.6 54 115-185 6-61 (80)
408 KOG0306 WD40-repeat-containing 40.3 1.9E+02 0.0041 35.6 10.5 105 268-424 377-483 (888)
409 KOG0289 mRNA splicing factor [ 40.2 6.6E+02 0.014 29.3 18.4 74 322-428 307-380 (506)
410 KOG0293 WD40 repeat-containing 40.2 4.3E+02 0.0094 30.6 12.7 24 486-509 404-427 (519)
411 PHA02790 Kelch-like protein; P 39.7 6.7E+02 0.014 29.2 21.7 28 483-513 402-429 (480)
412 KOG2919 Guanine nucleotide-bin 39.2 3.5E+02 0.0077 30.4 11.6 64 276-348 122-186 (406)
413 PRK10954 periplasmic protein d 39.0 37 0.0008 34.9 4.1 42 107-155 36-81 (207)
414 PF01011 PQQ: PQQ enzyme repea 38.9 47 0.001 24.7 3.6 23 407-430 1-23 (38)
415 PHA00407 phage lambda Rz1-like 38.5 17 0.00037 31.9 1.3 48 3-51 4-54 (84)
416 KOG3414 Component of the U4/U6 38.3 2.7E+02 0.0059 27.2 9.3 59 106-180 21-79 (142)
417 TIGR03074 PQQ_membr_DH membran 38.1 8.6E+02 0.019 30.5 16.2 78 276-359 194-288 (764)
418 PF07315 DUF1462: Protein of u 38.0 71 0.0015 29.2 5.1 54 131-185 19-75 (93)
419 PF14339 DUF4394: Domain of un 36.3 5.7E+02 0.012 27.4 18.0 35 321-356 29-63 (236)
420 PF06739 SBBP: Beta-propeller 35.8 29 0.00063 26.2 2.0 21 319-340 13-33 (38)
421 KOG0301 Phospholipase A2-activ 35.6 9.3E+02 0.02 29.7 15.8 135 238-425 115-249 (745)
422 KOG0276 Vesicle coat complex C 35.3 5.4E+02 0.012 31.4 12.9 48 395-444 432-480 (794)
423 COG1520 FOG: WD40-like repeat 35.1 6.5E+02 0.014 27.8 13.6 118 263-429 102-221 (370)
424 PF01011 PQQ: PQQ enzyme repea 34.2 70 0.0015 23.7 3.9 23 489-512 1-23 (38)
425 KOG0922 DEAH-box RNA helicase 33.5 1.7E+02 0.0036 35.7 8.7 151 134-296 183-354 (674)
426 TIGR03140 AhpF alkyl hydropero 33.1 1.9E+02 0.0042 33.9 9.4 84 104-223 113-196 (515)
427 KOG2111 Uncharacterized conser 33.1 7.5E+02 0.016 27.8 13.2 115 262-428 91-215 (346)
428 smart00564 PQQ beta-propeller 32.5 78 0.0017 22.1 3.8 25 405-430 5-29 (33)
429 KOG0321 WD40 repeat-containing 32.2 7.6E+02 0.016 30.2 13.5 63 276-349 111-175 (720)
430 KOG0640 mRNA cleavage stimulat 31.8 4.3E+02 0.0094 29.6 10.7 71 269-349 221-291 (430)
431 PF13570 PQQ_3: PQQ-like domai 31.5 72 0.0016 23.7 3.6 24 401-426 17-40 (40)
432 cd03527 RuBisCO_small Ribulose 31.1 75 0.0016 29.5 4.3 37 115-154 45-85 (99)
433 KOG0283 WD40 repeat-containing 30.8 4.8E+02 0.01 32.3 12.0 74 321-429 412-485 (712)
434 PF14583 Pectate_lyase22: Olig 30.2 2.3E+02 0.0049 32.5 8.7 71 404-514 44-117 (386)
435 cd03036 ArsC_like Arsenate Red 29.9 55 0.0012 30.3 3.4 62 115-193 4-67 (111)
436 KOG1407 WD40 repeat protein [F 29.2 8E+02 0.017 27.0 12.4 107 270-425 70-177 (313)
437 KOG0294 WD40 repeat-containing 29.0 8.7E+02 0.019 27.3 17.3 110 268-430 47-162 (362)
438 PF00400 WD40: WD domain, G-be 28.9 1E+02 0.0022 21.9 4.1 27 397-423 13-39 (39)
439 PF12601 Rubi_NSP_C: Rubivirus 28.6 21 0.00045 29.2 0.2 12 607-618 35-46 (66)
440 COG0823 TolB Periplasmic compo 28.5 9.7E+02 0.021 27.7 15.4 30 491-520 297-327 (425)
441 PF14517 Tachylectin: Tachylec 28.3 4.9E+02 0.011 27.8 10.3 113 269-425 85-206 (229)
442 TIGR03074 PQQ_membr_DH membran 28.2 1.3E+03 0.028 29.0 22.8 74 276-354 260-349 (764)
443 cd03029 GRX_hybridPRX5 Glutare 28.2 1.3E+02 0.0029 24.9 5.2 21 113-140 4-24 (72)
444 COG1520 FOG: WD40-like repeat 27.9 8.6E+02 0.019 26.9 17.3 66 275-353 67-133 (370)
445 PRK13256 thiopurine S-methyltr 27.8 1.1E+02 0.0024 32.4 5.5 43 126-181 50-92 (226)
446 KOG1273 WD40 repeat protein [G 27.6 6.3E+02 0.014 28.4 11.1 128 256-425 97-226 (405)
447 KOG3881 Uncharacterized conser 27.0 2.4E+02 0.0052 32.2 8.1 83 397-518 204-288 (412)
448 KOG0301 Phospholipase A2-activ 26.5 8E+02 0.017 30.2 12.5 110 263-425 178-288 (745)
449 PRK10824 glutaredoxin-4; Provi 26.3 1.4E+02 0.0029 28.4 5.3 26 108-140 14-43 (115)
450 KOG3914 WD repeat protein WDR4 25.8 1.1E+03 0.023 27.2 13.9 33 480-512 196-228 (390)
451 KOG0647 mRNA export protein (c 25.3 3.8E+02 0.0083 29.8 9.0 84 321-437 30-114 (347)
452 COG4247 Phy 3-phytase (myo-ino 25.1 4.8E+02 0.01 28.6 9.5 28 321-349 207-234 (364)
453 cd03032 ArsC_Spx Arsenate Redu 25.1 1.8E+02 0.0039 27.0 5.9 63 114-193 4-68 (115)
454 PF08662 eIF2A: Eukaryotic tra 24.6 5.7E+02 0.012 25.8 10.0 73 269-355 105-185 (194)
455 KOG2048 WD40 repeat protein [G 24.4 1.2E+03 0.025 28.8 13.3 120 268-429 114-237 (691)
456 PF07433 DUF1513: Protein of u 23.8 3.3E+02 0.0072 30.2 8.4 68 264-348 216-284 (305)
457 PF05694 SBP56: 56kDa selenium 23.2 2.9E+02 0.0064 32.2 8.1 73 266-338 313-393 (461)
458 PRK01655 spxA transcriptional 23.1 1.6E+02 0.0035 28.2 5.3 63 113-190 3-65 (131)
459 TIGR03547 muta_rot_YjhT mutatr 22.6 1E+03 0.022 25.9 12.9 69 276-356 17-100 (346)
460 PF05567 Neisseria_PilC: Neiss 22.5 1.6E+02 0.0034 32.9 5.8 19 407-426 222-240 (335)
461 KOG0649 WD40 repeat protein [G 22.0 6E+02 0.013 27.7 9.4 38 399-437 118-156 (325)
462 KOG0646 WD40 repeat protein [G 21.9 8.5E+02 0.018 28.6 11.2 119 276-428 188-310 (476)
463 PF05694 SBP56: 56kDa selenium 21.8 2.2E+02 0.0047 33.3 6.7 79 273-351 255-344 (461)
464 KOG0924 mRNA splicing factor A 21.8 1.6E+03 0.034 28.2 13.7 153 133-296 487-661 (1042)
465 PLN03098 LPA1 LOW PSII ACCUMUL 21.6 1.8E+02 0.0039 33.9 6.1 116 97-222 285-441 (453)
466 cd02983 P5_C P5 family, C-term 21.6 3E+02 0.0065 26.3 6.8 72 133-230 42-119 (130)
467 KOG0641 WD40 repeat protein [G 21.5 1E+03 0.022 25.6 12.9 116 270-426 187-304 (350)
468 KOG0650 WD40 repeat nucleolar 20.9 5E+02 0.011 31.4 9.4 136 239-427 498-639 (733)
469 TIGR01617 arsC_related transcr 20.7 1.3E+02 0.0027 28.1 3.9 62 114-190 3-64 (117)
470 KOG3170 Conserved phosducin-li 20.5 1.3E+02 0.0028 31.6 4.1 79 100-214 104-182 (240)
471 KOG0649 WD40 repeat protein [G 20.5 7.5E+02 0.016 27.0 9.8 75 268-356 118-194 (325)
472 COG1651 DsbG Protein-disulfide 20.2 1.7E+02 0.0038 30.3 5.3 45 96-147 72-116 (244)
473 PF05768 DUF836: Glutaredoxin- 20.2 4.1E+02 0.0088 22.9 6.8 77 115-223 5-81 (81)
474 KOG0275 Conserved WD40 repeat- 20.0 8.4E+02 0.018 27.5 10.3 81 270-360 398-478 (508)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=3.5e-48 Score=474.11 Aligned_cols=416 Identities=20% Similarity=0.240 Sum_probs=307.5
Q ss_pred CCCCceeecc--cCCCcccc-CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC
Q 004302 86 FQGPHHLWFN--IVEDNIHF-FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS 160 (762)
Q Consensus 86 l~g~~~~w~n--~~g~~v~L-sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~ 160 (762)
.+.|+|...+ .+|+++++ ++++||+|||+|||+||+|| ++|+|.|++|+++|++ |+||+|+.+. ++.
T Consensus 395 ~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC-------~~e~P~L~~l~~~y~~~~~~vvgV~~~~-~D~ 466 (1057)
T PLN02919 395 TKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINC-------MHVLPDLEFLEKKYKDQPFTVVGVHSAK-FDN 466 (1057)
T ss_pred CcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhH-------HhHhHHHHHHHHHcCCCCeEEEEEeccc-ccc
Confidence 3444454433 45678988 68999999999999999866 9999999999999986 9999998764 555
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCCCccccccC---ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccC--CC
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQEN--SS 234 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~--s~ 234 (762)
+++.+++++|+++++++||++.|....+++.|+ +| +||||++|+++.++.|+...++|++.|+.++.--.+. -+
T Consensus 467 ~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~~~~~~ 546 (1057)
T PLN02919 467 EKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEKKLLD 546 (1057)
T ss_pred cccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhccccccc
Confidence 567889999999999999999998888888876 45 5999999999999999999999999999887732111 01
Q ss_pred CCCCccchhhhhhhhccCCCCcccccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecC-C-CCCCCCc
Q 004302 235 SPSGLKCTWAKQAEVLKEPHACSSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGS-C-PGFEDGE 312 (762)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGs-G-~G~~DG~ 312 (762)
..+.- .++.+++-+. ....+|++|.+|++|+.+++|||+|++||||+++|.+|+++..+|+ | .|+.+|.
T Consensus 547 ~~~~~-------~~~~~~~~~~--~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~ 617 (1057)
T PLN02919 547 STPLP-------LSLEKDNDPR--LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGS 617 (1057)
T ss_pred cCCCc-------ccccccCCcc--cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCc
Confidence 11111 1233333332 2235799999999997789999999999999999999999988887 5 7788999
Q ss_pred ccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCC
Q 004302 313 FESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP 392 (762)
Q Consensus 313 ~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~ 392 (762)
+..++|++|+||+++++++.|||||++||+||+||+.++.++|++|+|.. |.. ..|. .....
T Consensus 618 ~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~---g~~-------~~gg--------~~~~~ 679 (1057)
T PLN02919 618 FEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTK---GSD-------YQGG--------KKGTS 679 (1057)
T ss_pred hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc---cCC-------CCCC--------hhhhH
Confidence 99999999999999987778999999999999999999999999987621 110 0000 01122
Q ss_pred CCCCCcceEEEcC-CCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCccc
Q 004302 393 QSLIFPWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS 471 (762)
Q Consensus 393 ~~L~~P~gIavd~-dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~ 471 (762)
+.|++|++|++++ +|.|||+|.+||+|++||..++.+.++ .|+|......|. ..
T Consensus 680 ~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~-~G~G~~~~~~g~------------------------~~ 734 (1057)
T PLN02919 680 QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF-SGDGYERNLNGS------------------------SG 734 (1057)
T ss_pred hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE-ecCCccccCCCC------------------------cc
Confidence 4589999999998 699999999999999999999887654 565521110010 00
Q ss_pred ccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEEEeecc---------cc---ccCCCceeeccccceeecc
Q 004302 472 LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSN---------FA---ILGLPYWFAFPLERVYAVA 539 (762)
Q Consensus 472 ~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~---------~G---~lG~p~~~~~pl~~v~~~~ 539 (762)
.......|.+.++++.++.|||+|++||+|++||++++..+.+.... +| ..|....+..|....++..
T Consensus 735 ~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 01112234667887777789999999999999999987665443210 11 0111123444544333321
Q ss_pred --cccCCCccccceeeecCCCcee
Q 004302 540 --GGHQGSWTDHIQRCSLLPGRID 561 (762)
Q Consensus 540 --~~~~g~~~~~~~~~~~~pG~~~ 561 (762)
..+.+..++.++.|++..|.+.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEE
Confidence 1235566788888988776554
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.91 E-value=8.8e-22 Score=242.28 Aligned_cols=259 Identities=16% Similarity=0.139 Sum_probs=177.3
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCC-CCC--CCCc-ccccccCCcceEEEecCCCeEE
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSC-PGF--EDGE-FESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG-~G~--~DG~-~~~a~fn~P~GIavd~~~g~LY 334 (762)
....|+.|.||++|+.++.|||+|++||+|+++|.. +.+.+.+|+| .|. .+|. .....|+.|.+|+++++++.||
T Consensus 619 ~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 619 EDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred hccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE
Confidence 456899999999998778899999999999999984 5555666765 332 2222 2335699999999998789999
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEE
Q 004302 335 IVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIIN 413 (762)
Q Consensus 335 VADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD 413 (762)
|+|++||+|+++|..++.+.+++|.|..... .|. ......|..|+||+++++|. |||+|
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~-----------~g~---------~~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNL-----------NGS---------SGTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccC-----------CCC---------ccccccccCccEEEEeCCCCEEEEEE
Confidence 9999999999999999999999877521100 010 01234589999999999875 99999
Q ss_pred CCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccc-cCCcccccCCCCcceeeeEEecCCEEE
Q 004302 414 RSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ-IDSSCSLKELPYAGLISSSIAFQNHIL 492 (762)
Q Consensus 414 ~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~-~d~~~~~~~~p~~~lgsav~~~~g~LY 492 (762)
.+||+|++||++++.+..+..|.+.. +.+.+... .++.+ .......|.+.+++. +|+||
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~------------------~~~l~~fG~~dG~g-~~~~l~~P~Gvavd~-dG~LY 818 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTF------------------SDNLFKFGDHDGVG-SEVLLQHPLGVLCAK-DGQIY 818 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEeccccc------------------CcccccccCCCCch-hhhhccCCceeeEeC-CCcEE
Confidence 99999999999887765443222210 00111100 01111 111223345666654 56799
Q ss_pred EEECCCCEEEEEECCCCcEEEEeeccccccC------CCceeeccccceeecc--cccCCCccccceeeecCCCce
Q 004302 493 LCDIVGQRIMRLNRESGVCSNFQFSNFAILG------LPYWFAFPLERVYAVA--GGHQGSWTDHIQRCSLLPGRI 560 (762)
Q Consensus 493 VADt~NhRIrkidl~~~~~sti~~s~~G~lG------~p~~~~~pl~~v~~~~--~~~~g~~~~~~~~~~~~pG~~ 560 (762)
|||++||+|++||.+++.++++...| ..| .+..+..|.+..++-. ..+.++.++.++.+++..|+.
T Consensus 819 VADs~N~rIrviD~~tg~v~tiaG~G--~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 819 VADSYNHKIKKLDPATKRVTTLAGTG--KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCeEEEEeccC--CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999999999999998876433 222 2233344444333221 134566678899999988876
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.86 E-value=2.9e-21 Score=196.56 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=110.2
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcCC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAVD 163 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~~ 163 (762)
.++|++.+.+|+.++|++++||+|||+|||+||+|| ++|||.|++|+++|++ ++||||++++ +. ..++
T Consensus 19 ~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C-------~~e~p~L~~l~~~~~~~g~~vvgv~~~~-~~~~e~d~ 90 (199)
T PTZ00056 19 IYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLT-------KKHVDQMNRLHSVFNPLGLEILAFPTSQ-FLNQEFPN 90 (199)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCCh-------HHHHHHHHHHHHHHhcCceEEEEecchh-ccCCCCCC
Confidence 567777788888999999999999999999999866 9999999999999985 9999999753 21 1136
Q ss_pred HHHHHHHHHhcCCCcceeeCC----CC--c--------ccccc-------Cce----EEEEcCCCCEEEEecCCcCHHHH
Q 004302 164 QTRLVEMLMKEYITFPILLSN----KN--F--------PQMEN-------GAC----YLLSKDFGNARVFHENSLDIGML 218 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~----~~--~--------~~~~y-------gv~----t~lId~~G~iv~~~~G~~~~~~L 218 (762)
.+.+++|+++++++||++.|. .. . ....| +++ +||||++|+++.++.|..+.++|
T Consensus 91 ~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l 170 (199)
T PTZ00056 91 TKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLEL 170 (199)
T ss_pred HHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence 789999999999999998652 10 0 00111 122 79999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 004302 219 NKAVEELIMQQ 229 (762)
Q Consensus 219 ~~~l~~ll~~~ 229 (762)
++.|+++++++
T Consensus 171 ~~~I~~ll~~~ 181 (199)
T PTZ00056 171 EKKIAELLGVK 181 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 4
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.85 E-value=2.3e-21 Score=182.18 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=101.6
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHH
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLV 168 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~ 168 (762)
..|+|. |++++|++++||+|||+|||+||++| +++||.|++++++|++ ++||+|+.++ +..+++.+.++
T Consensus 7 ~~w~~~-~~~v~l~~~~gk~vvl~F~a~~C~~C-------~~~~p~l~~l~~~~~~~~~~vi~i~~~~-~~~~~~~~~~~ 77 (126)
T cd03012 7 LQWLNT-DKPLSLAQLRGKVVLLDFWTYCCINC-------LHTLPYLTDLEQKYKDDGLVVIGVHSPE-FAFERDLANVK 77 (126)
T ss_pred hhhhcC-CCccCHHHhCCCEEEEEEECCCCccH-------HHHHHHHHHHHHHcCcCCeEEEEeccCc-cccccCHHHHH
Confidence 569988 56899999999999999999999866 9999999999999985 9999998864 44556889999
Q ss_pred HHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCc
Q 004302 169 EMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSL 213 (762)
Q Consensus 169 ~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~ 213 (762)
+|+++++++||++.|.+..+...|++ | +||||++|+++..+.|+.
T Consensus 78 ~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~~ 126 (126)
T cd03012 78 SAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGEG 126 (126)
T ss_pred HHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecCC
Confidence 99999999999999998888888875 5 699999999999999873
No 5
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.85 E-value=2.5e-21 Score=188.07 Aligned_cols=129 Identities=9% Similarity=0.064 Sum_probs=104.5
Q ss_pred ceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcCCHH
Q 004302 90 HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAVDQT 165 (762)
Q Consensus 90 ~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~~~~ 165 (762)
+|++.+.+|++++|++++||+|||+|||+||+|| +.|||.|++++++|++ ++||||+... +. ..++.+
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c-------~~~~~~l~~l~~~~~~~~~~v~~i~~~~-~~~~~~d~~~ 75 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFT-------DQNYRALQELHRELGPSHFNVLAFPCNQ-FGESEPDSSK 75 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCch-------hhhHHHHHHHHHHHhhCCeEEEEEeccc-cccCCCCCHH
Confidence 3566778888999999999999999999999866 9999999999999985 9999999532 11 124678
Q ss_pred HHHHHHHh-cCCCcceeeCC---CCcccc--cc------Cce-----EEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 166 RLVEMLMK-EYITFPILLSN---KNFPQM--EN------GAC-----YLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 166 ~v~~f~~k-~~itfPVl~D~---~~~~~~--~y------gv~-----t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.+++|+++ ++++||++.|. +..... .| +.| +||||++|+++.++.|..+.++|++.|++++
T Consensus 76 ~~~~f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 76 EIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHHHHHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 89999986 89999999762 111111 12 345 6999999999999999999999999998764
No 6
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.85 E-value=2.6e-21 Score=187.98 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=101.4
Q ss_pred CceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-C-cCCH
Q 004302 89 PHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-S-AVDQ 164 (762)
Q Consensus 89 ~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~-e~~~ 164 (762)
++|++.+.+|+.++|++++||+|||+|||+||+ | +.|||.|++++++|++ ++||||+.+. +. . .++.
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C-------~~e~p~l~~l~~~~~~~~~~vv~v~~~~-~~~~~~~~~ 73 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-F-------TPQYEGLEALYEKYKDRGLVVLGFPCNQ-FGGQEPGSN 73 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-c-------hHHHHHHHHHHHHhcCCCEEEEEeccCc-cccCCCCCH
Confidence 567888889999999999999999999999996 6 9999999999999975 9999998753 21 1 1356
Q ss_pred HHHHHHHHh-cCCCcceeeCC--CCc-cccccC-----ce------------EEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 165 TRLVEMLMK-EYITFPILLSN--KNF-PQMENG-----AC------------YLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 165 ~~v~~f~~k-~~itfPVl~D~--~~~-~~~~yg-----v~------------t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
+.+++|+++ ++++||++.|. .+. ....|+ .| +||||++|+++.++.|..+.++|++.
T Consensus 74 ~~~~~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 74 EEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHHHHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 889999997 89999999763 222 232232 22 79999999999999999998888764
No 7
>PLN02412 probable glutathione peroxidase
Probab=99.85 E-value=3.7e-21 Score=190.35 Aligned_cols=134 Identities=9% Similarity=0.075 Sum_probs=109.1
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcCC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAVD 163 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~~ 163 (762)
.|+|++.+.+|+.++|++++||+|||+|||+||++| ++|||.|++++++|++ ++||||+.+. +. ..++
T Consensus 9 ~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c-------~~e~~~l~~l~~~~~~~g~~vvgv~~~~-~~~~~~~~ 80 (167)
T PLN02412 9 IYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLT-------DSNYKELNVLYEKYKEQGFEILAFPCNQ-FLGQEPGS 80 (167)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCCh-------HHHHHHHHHHHHHHhhCCcEEEEecccc-cccCCCCC
Confidence 677888888889999999999999999999999865 9999999999999986 9999999864 22 1135
Q ss_pred HHHHHHH-HHhcCCCcceeeC--CCC-ccccccC-------------c---e-EEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 164 QTRLVEM-LMKEYITFPILLS--NKN-FPQMENG-------------A---C-YLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 164 ~~~v~~f-~~k~~itfPVl~D--~~~-~~~~~yg-------------v---~-t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
.+.+.++ +++++++||++.+ .++ .....|+ + | +||||++|+++.++.|..+.++|++.|
T Consensus 81 ~~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i 160 (167)
T PLN02412 81 NEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDI 160 (167)
T ss_pred HHHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHH
Confidence 5566554 6899999999863 332 2222221 3 4 599999999999999999999999999
Q ss_pred HHHHHhh
Q 004302 223 EELIMQQ 229 (762)
Q Consensus 223 ~~ll~~~ 229 (762)
+++++|+
T Consensus 161 ~~~l~~~ 167 (167)
T PLN02412 161 QNLLGQA 167 (167)
T ss_pred HHHHhhC
Confidence 9999873
No 8
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.84 E-value=7.8e-21 Score=197.74 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=111.7
Q ss_pred CCCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--
Q 004302 84 NEFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-- 159 (762)
Q Consensus 84 ~~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-- 159 (762)
..-..|+|++.|.+|+.++|++++||+|||+|||+||++| +.|||+|++|+++|++ ++||||+.++ +.
T Consensus 75 ~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c-------~~e~p~L~~L~~~~~~~Gv~VIgV~~d~-~~~~ 146 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLT-------SSNYSELSHLYEKYKTQGFEILAFPCNQ-FGGQ 146 (236)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcch-------HHHHHHHHHHHHHHhcCCcEEEEEeccc-cccc
Confidence 3446788999999999999999999999999999999866 9999999999999985 9999999763 21
Q ss_pred CcCCHHHHHHHH-HhcCCCcceeeC--CCC-cccccc----------------Cce-EEEEcCCCCEEEEecCCcCHHHH
Q 004302 160 SAVDQTRLVEML-MKEYITFPILLS--NKN-FPQMEN----------------GAC-YLLSKDFGNARVFHENSLDIGML 218 (762)
Q Consensus 160 ~e~~~~~v~~f~-~k~~itfPVl~D--~~~-~~~~~y----------------gv~-t~lId~~G~iv~~~~G~~~~~~L 218 (762)
..++.+++++|+ ++++++|||+.| .++ .....| ..| +||||++|+++.++.|..++++|
T Consensus 147 e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~l 226 (236)
T PLN02399 147 EPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQI 226 (236)
T ss_pred CCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHH
Confidence 124678899998 689999999854 322 121111 124 69999999999999999999999
Q ss_pred HHHHHHHHH
Q 004302 219 NKAVEELIM 227 (762)
Q Consensus 219 ~~~l~~ll~ 227 (762)
++.|+++++
T Consensus 227 e~~I~~lL~ 235 (236)
T PLN02399 227 EKDIQKLLA 235 (236)
T ss_pred HHHHHHHhc
Confidence 999999884
No 9
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.83 E-value=1.9e-20 Score=187.99 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=108.1
Q ss_pred CCCceeecccC--CCccccCCC-CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCC
Q 004302 87 QGPHHLWFNIV--EDNIHFFKR-GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 87 ~g~~~~w~n~~--g~~v~Lsd~-rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~ 163 (762)
+.|+|.+.+.+ |+.+++.++ +||+|||+|||+||+|| ++|||.|++++++ +++||+|+.++ +
T Consensus 44 ~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C-------~~e~p~l~~l~~~--~~~vi~v~~~~------~ 108 (185)
T PRK15412 44 PVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTC-------RAEHQYLNQLSAQ--GIRVVGMNYKD------D 108 (185)
T ss_pred CCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHc--CCEEEEEECCC------C
Confidence 34555555655 356666665 89999999999999876 9999999999763 69999999875 6
Q ss_pred HHHHHHHHHhcCCCcce-eeCCCCccccccC---ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 164 QTRLVEMLMKEYITFPI-LLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPV-l~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
.+.+.+|+++++++||+ +.|....+..+|+ +| +|+||++|+++..+.|..+.+++++.|+.++++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 109 RQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred HHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 78899999999999995 6687777766765 55 79999999999999999999999999999998764
No 10
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.81 E-value=7.1e-20 Score=183.71 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=105.0
Q ss_pred CCceeecccCCCccccCCCCCCEE-EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCc-CC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFL-VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISA-VD 163 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~V-vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e-~~ 163 (762)
.|+|++.+.+|+.++|++++||+| |+.||||||+|| ++|||.|++++++|++ ++||||+.+...+.+ .+
T Consensus 20 ~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C-------~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 20 FFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLT-------SDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred ccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCch-------HHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 467778888888999999999965 455699999866 9999999999999985 999999975311112 25
Q ss_pred HHHHHHHHH-hcCCCcceeeC--CCCcc-ccc------------------cCce----EEEEcCCCCEEEEecCCcCHHH
Q 004302 164 QTRLVEMLM-KEYITFPILLS--NKNFP-QME------------------NGAC----YLLSKDFGNARVFHENSLDIGM 217 (762)
Q Consensus 164 ~~~v~~f~~-k~~itfPVl~D--~~~~~-~~~------------------ygv~----t~lId~~G~iv~~~~G~~~~~~ 217 (762)
.+.+.+|++ +++++||++.| .++.. ... .++| +||||++|+|+.++.|..+.+.
T Consensus 93 ~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~ 172 (183)
T PTZ00256 93 EPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNE 172 (183)
T ss_pred HHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHH
Confidence 678999986 78999999954 33221 111 1456 4999999999999999999999
Q ss_pred HHHHHHHHHH
Q 004302 218 LNKAVEELIM 227 (762)
Q Consensus 218 L~~~l~~ll~ 227 (762)
+++.|+++++
T Consensus 173 l~~~I~~ll~ 182 (183)
T PTZ00256 173 MIQDIEKLLN 182 (183)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.81 E-value=9.3e-20 Score=174.57 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=101.5
Q ss_pred CCceee--cccCCCccccCCCCCCEEEEEEecc-CCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 88 GPHHLW--FNIVEDNIHFFKRGGAFLVLAGRFV-DNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 88 g~~~~w--~n~~g~~v~Lsd~rGK~VvLnFWAt-WC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
.|++.+ .+.+|+.++|++++||++||+||++ ||+|| +.|||.|++|+++|++ ++||+|+.+.
T Consensus 6 ~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C-------~~~~p~l~~l~~~~~~~~v~~v~v~~~~------ 72 (146)
T PF08534_consen 6 APDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPC-------RKELPYLNELQEKYKDKGVDVVGVSSDD------ 72 (146)
T ss_dssp --CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHH-------HHHHHHHHHHHHHHHTTTCEEEEEEESS------
T ss_pred CCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcc-------hhhhhhHHhhhhhhccCceEEEEecccC------
Confidence 456666 5589999999999999999999999 99877 9999999999999865 9999999886
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccC------------ce-EEEEcCCCCEEEEecCCcC--HHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENG------------AC-YLLSKDFGNARVFHENSLD--IGMLNKA 221 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~yg------------v~-t~lId~~G~iv~~~~G~~~--~~~L~~~ 221 (762)
+.. +.+|+++++++||++.|.+..+..+|+ +| ++|||++|+|++.+.|..+ ..++++.
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 73 DPP-VREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp SHH-HHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred CHH-HHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 334 999999999999999998877776665 44 5999999999999999888 3445544
No 12
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.80 E-value=2e-19 Score=168.45 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=102.4
Q ss_pred CCCceeecccCC--CccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 87 QGPHHLWFNIVE--DNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 87 ~g~~~~w~n~~g--~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
+.|+|.|.+.+| +.+++++++||+|||+|||+||++| ++++|.|+++++++. ++||+|+.++ +.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C-------~~~~~~l~~l~~~~~-~~vv~v~~~~------~~ 67 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPC-------REEHPVLMALARQGR-VPIYGINYKD------NP 67 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHH-------HHHHHHHHHHHHhcC-cEEEEEECCC------CH
Confidence 356778888877 7899999999999999999999866 999999999999874 9999999775 68
Q ss_pred HHHHHHHHhcCCCcc-eeeCCCCccccccC---ce-EEEEcCCCCEEEEecCCcCHHHH
Q 004302 165 TRLVEMLMKEYITFP-ILLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSLDIGML 218 (762)
Q Consensus 165 ~~v~~f~~k~~itfP-Vl~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L 218 (762)
+.+++|+++++++|| ++.|....+...|+ +| +|+||++|+++.++.|..+.+.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 68 ENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 899999999999996 66788777777775 46 79999999999999999997654
No 13
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.77 E-value=2.2e-18 Score=171.12 Aligned_cols=127 Identities=12% Similarity=0.020 Sum_probs=106.1
Q ss_pred CCCCceeecccCCC--ccccCCC-CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcC
Q 004302 86 FQGPHHLWFNIVED--NIHFFKR-GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAV 162 (762)
Q Consensus 86 l~g~~~~w~n~~g~--~v~Lsd~-rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~ 162 (762)
-+.|+|+..|.+|+ .++++++ +||+|+|+|||+||++| ++++|.+++++++ +++||+|+.++
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C-------~~~~p~l~~l~~~--~~~vi~V~~~~------ 102 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPC-------RAEHPYLNELAKD--GLPIVGVDYKD------ 102 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHH-------HHHHHHHHHHHHc--CCEEEEEECCC------
Confidence 34666776777776 4555565 79999999999999866 9999999999874 59999999765
Q ss_pred CHHHHHHHHHhcCCCcc-eeeCCCCccccccC---ce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFP-ILLSNKNFPQMENG---AC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfP-Vl~D~~~~~~~~yg---v~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+.++.++|+++++++|| ++.|....+..+|+ +| +|+||++|+++..+.|..+.+++++.|.+++.
T Consensus 103 ~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 103 QSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred ChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 56778899999999998 56788877777775 56 69999999999999999999999999998874
No 14
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.76 E-value=3.4e-18 Score=171.64 Aligned_cols=120 Identities=11% Similarity=0.004 Sum_probs=96.6
Q ss_pred CCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEE------EEEEcCCCccCcCCHHHHHHH
Q 004302 97 VEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQV------IGFLHGCSTISAVDQTRLVEM 170 (762)
Q Consensus 97 ~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~V------vgV~~~~~~~~e~~~~~v~~f 170 (762)
+.++++.++++||++||||||+||+|| +.|+|.|.+|.++ +|.+ ++|+.+++ ......-+++|
T Consensus 48 ~y~~~~~~~l~GKV~lvn~~Aswc~~c-------~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~--~~~~~~fVk~f 116 (184)
T TIGR01626 48 VYQPWGSAELAGKVRVVHHIAGRTSAK-------EXNASLIDAIKAA--KFPPVKYQTTTIINADDA--IVGTGMFVKSS 116 (184)
T ss_pred cceeccHHHcCCCEEEEEEEecCCChh-------hccchHHHHHHHc--CCCcccccceEEEECccc--hhhHHHHHHHH
Confidence 344899999999999999999999866 9999999999654 4666 99998861 11123346778
Q ss_pred HHhcCCCcc---eeeCCCCccccccCc---e-E-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 171 LMKEYITFP---ILLSNKNFPQMENGA---C-Y-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 171 ~~k~~itfP---Vl~D~~~~~~~~ygv---~-t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+++.+..|| +++|+++....+|++ | + ||||++|+++.++.|..+.+++++ +..++++
T Consensus 117 ie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~~ 181 (184)
T TIGR01626 117 AKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVNG 181 (184)
T ss_pred HHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHHH
Confidence 888899998 999998877777765 3 5 899999999999999999998877 5544443
No 15
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.75 E-value=7.2e-18 Score=161.14 Aligned_cols=123 Identities=9% Similarity=-0.002 Sum_probs=103.0
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~ 166 (762)
..|+|.+.+.+|+.++|++++||++||+||++||+ |+| +.+||.|++++++|++++||+|+.+. .+.
T Consensus 5 ~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c----~~C--~~e~~~l~~~~~~~~~~~vi~Is~d~-------~~~ 71 (143)
T cd03014 5 KAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDT----PVC--ATQTKRFNKEAAKLDNTVVLTISADL-------PFA 71 (143)
T ss_pred CCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCC----CcC--HHHHHHHHHHHHhcCCCEEEEEECCC-------HHH
Confidence 45678888888999999999999999999999972 467 99999999999999889999999764 667
Q ss_pred HHHHHHhcCC-CcceeeCCC-CccccccCc---------e-EEEEcCCCCEEEEecCCc--CHHHHHHHH
Q 004302 167 LVEMLMKEYI-TFPILLSNK-NFPQMENGA---------C-YLLSKDFGNARVFHENSL--DIGMLNKAV 222 (762)
Q Consensus 167 v~~f~~k~~i-tfPVl~D~~-~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~--~~~~L~~~l 222 (762)
+++|.+++++ +||++.|.. ....++||+ | +||||++|+|+..+.|.. +..++++.|
T Consensus 72 ~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 72 QKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 8999999997 799999975 667777765 2 599999999999998753 344566554
No 16
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.75 E-value=1.9e-18 Score=167.71 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=78.6
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---------CeEEEEEEcCCCccCcCCHHHHHHH
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---------QLQVIGFLHGCSTISAVDQTRLVEM 170 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---------~v~VvgV~~~~~~~~e~~~~~v~~f 170 (762)
.++|++++||+|+||||||||+|| ++|||.|.++|+++. +|+||+|+.+. +.+.+.+|
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppC-------r~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~------~~~~~~~f 83 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQC-------QLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ------SEQQQESF 83 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhH-------HHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC------CHHHHHHH
Confidence 568899999999999999999876 999999999987653 39999999886 67789999
Q ss_pred HHhcCCCcce--eeCC-CCccccccC---ce-EEEEcCCCCEEEE
Q 004302 171 LMKEYITFPI--LLSN-KNFPQMENG---AC-YLLSKDFGNARVF 208 (762)
Q Consensus 171 ~~k~~itfPV--l~D~-~~~~~~~yg---v~-t~lId~~G~iv~~ 208 (762)
+++.+++||. +.+. +..+..+|+ +| +||||++|+++.+
T Consensus 84 ~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 84 LKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 9999988633 3333 235566664 56 5999999999976
No 17
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.75 E-value=1.1e-17 Score=164.40 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=112.3
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~ 164 (762)
+.|++.+.+.+|+.+++++++||+++|+|||+||++| +.++|.|.+++++|++ ++||+|+.++ +.
T Consensus 40 ~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C-------~~~~~~l~~~~~~~~~~~~~vi~i~~d~------~~ 106 (173)
T PRK03147 40 EAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPC-------EKEMPYMNELYPKYKEKGVEIIAVNVDE------TE 106 (173)
T ss_pred CCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHH-------HHHHHHHHHHHHHhhcCCeEEEEEEcCC------CH
Confidence 3556777788888999999999999999999999866 9999999999999986 9999999886 67
Q ss_pred HHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 165 TRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+.+.+|+++++++||++.|....+.+.|++. +|+||++|+++..+.|..+.+++.+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 107 LAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 8999999999999999999888888888754 599999999999999999998888887754
No 18
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.74 E-value=1.1e-17 Score=165.57 Aligned_cols=126 Identities=10% Similarity=-0.043 Sum_probs=101.6
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccC-CCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVD-NCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtW-C~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
-+.|+|.+.+.+|+.++|++++||++||+||++| |+ +| ..|||.|++++++|.+++||+|+.+. .
T Consensus 22 ~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp-----~C--~~e~~~l~~~~~~~~~~~vv~vs~D~-------~ 87 (167)
T PRK00522 22 DKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTG-----VC--ATSVRKFNQEAAELDNTVVLCISADL-------P 87 (167)
T ss_pred CCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCC-----cc--HHHHHHHHHHHHHcCCcEEEEEeCCC-------H
Confidence 3467788888889999999999999999999999 55 55 99999999999999779999998764 5
Q ss_pred HHHHHHHHhcCCC-cceeeCC-CCccccccCc-------------eEEEEcCCCCEEEEecCC--cCHHHHHHHHHHH
Q 004302 165 TRLVEMLMKEYIT-FPILLSN-KNFPQMENGA-------------CYLLSKDFGNARVFHENS--LDIGMLNKAVEEL 225 (762)
Q Consensus 165 ~~v~~f~~k~~it-fPVl~D~-~~~~~~~ygv-------------~t~lId~~G~iv~~~~G~--~~~~~L~~~l~~l 225 (762)
..+++|+++++++ ||++.|. ...+.++||+ .+||||++|+|+..+.+. .+...+++.++.+
T Consensus 88 ~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 88 FAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred HHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 6789999999998 6888884 4466667765 259999999999988643 3333455555543
No 19
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.74 E-value=5.3e-18 Score=160.71 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=106.1
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~ 164 (762)
.|+|.+.+.+|+.++|++++||++||+||+ +||+ +| ..++|.|.+++++|.+ ++||+|+.+ +.
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp-----~C--~~~~~~l~~~~~~~~~~~~~vv~is~d-------~~ 68 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTP-----GC--TKEACDFRDLYEEFKALGAVVIGVSPD-------SV 68 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCC-----ch--HHHHHHHHHHHHHHHHCCCEEEEEcCC-------CH
Confidence 567888888999999999999999999995 6776 45 9999999999999964 999999876 46
Q ss_pred HHHHHHHHhcCCCcceeeCCCCccccccCce-------------EEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 165 TRLVEMLMKEYITFPILLSNKNFPQMENGAC-------------YLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~-------------t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
+.+.+|+++++++||++.|.+..+.+.||+. +||||++|+++..+.|....+.+++.+
T Consensus 69 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 69 ESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8899999999999999999988887777643 499999999999999999888888765
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.74 E-value=9.6e-18 Score=162.58 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=107.3
Q ss_pred CCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
-+.|+|.+.+.+|+.++|++++||++||+||++||+ |+| ..++|.|.+++++|++ ++||+|+.+ +
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~----p~C--~~~~~~l~~~~~~~~~~~v~vi~Is~d-------~ 74 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMT----PGC--TVQACGLRDNMDELKKAGVVVLGISTD-------K 74 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCC----Cch--HHHHHHHHHHHHHHHHCCCEEEEEcCC-------C
Confidence 356788888999999999999999999999999774 457 9999999999999964 999999876 4
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCccccccCc---------------e-EEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNFPQMENGA---------------C-YLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---------------~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.+++++|+++++++||++.|....+.+.||+ + +||||++|+++..+.|....+.+++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 75 PEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred HHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 6889999999999999999988777777764 3 49999999999999998776666665544
No 21
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.73 E-value=1.5e-17 Score=189.70 Aligned_cols=126 Identities=6% Similarity=-0.090 Sum_probs=108.5
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCCHH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVDQT 165 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~~~ 165 (762)
.|+|...+.+|+.+.++ +||+|||+|||+||+|| +++||.|++|+++|+ +++||+|+.+. ...+++.+
T Consensus 38 lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppC-------k~emP~L~eL~~e~k~~~v~VI~Vs~~~-~~~e~~~~ 107 (521)
T PRK14018 38 LSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLC-------LSELGETEKWAQDAKFSSANLITVASPG-FLHEKKDG 107 (521)
T ss_pred CCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHH-------HHHHHHHHHHHHHhccCCeEEEEEeccc-ccccccHH
Confidence 56788888888899987 89999999999999876 999999999999997 49999999864 34455677
Q ss_pred HHHHHHHhcCC-CcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 166 RLVEMLMKEYI-TFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 166 ~v~~f~~k~~i-tfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.+++|+++.++ +|||+.|....+..+|++ | ++|||++|+++..+.|..+.++|++.|+
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 88889888776 689999998888888764 5 4799999999999999999988888877
No 22
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.73 E-value=1.7e-17 Score=151.99 Aligned_cols=105 Identities=16% Similarity=0.054 Sum_probs=88.3
Q ss_pred CceeecccCCCccccCCCC-CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHH
Q 004302 89 PHHLWFNIVEDNIHFFKRG-GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 89 ~~~~w~n~~g~~v~Lsd~r-GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~ 166 (762)
|+|.+.+.+|+.++|.+++ ||++||+||++||++| ++++|.|++++++|++ +.|+++. +. +.+.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C-------~~~~p~l~~~~~~~~~~~~vi~v~-~~------~~~~ 66 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVC-------KKLLPVIRSIARAEADWLDVVLAS-DG------EKAE 66 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcch-------HhHhHHHHHHHHHhcCCcEEEEEe-CC------CHHH
Confidence 3567778889999999998 9999999999999866 9999999999999976 8888774 43 6788
Q ss_pred HHHHHHhcCCC-cceeeCCCCccccccCc---e-EEEEcCCCCEEEEe
Q 004302 167 LVEMLMKEYIT-FPILLSNKNFPQMENGA---C-YLLSKDFGNARVFH 209 (762)
Q Consensus 167 v~~f~~k~~it-fPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~ 209 (762)
+.+|++++++. ||++.+.. +.+.|++ | +|+||++|+++++.
T Consensus 67 ~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 67 HQRFLKKHGLEAFPYVLSAE--LGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHHHhCCCCCcEEecHH--HHhhcCCCCcCeEEEECCCCeEEecc
Confidence 99999999995 99988543 4556665 5 69999999998764
No 23
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.72 E-value=4.5e-17 Score=160.88 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=114.2
Q ss_pred CCceeecccCCCccccCCC-CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc--CcC
Q 004302 88 GPHHLWFNIVEDNIHFFKR-GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI--SAV 162 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~-rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~--~e~ 162 (762)
.|+|.+.+.+|+.++|.++ +||++||+||++||++| ..++|.|.+|+++|++ ++||+|+.+. .. ..+
T Consensus 4 ~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c-------~~~~~~l~~l~~~~~~~~v~~v~is~d~-~~~~~~d 75 (171)
T cd02969 4 APDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYV-------KAIEDRLNRLAKEYGAKGVAVVAINSND-IEAYPED 75 (171)
T ss_pred CCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccH-------HHHHHHHHHHHHHHhhCCeEEEEEecCc-ccccccc
Confidence 4567777888889999998 99999999999999866 9999999999999984 9999999875 11 013
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCce----EEEEcCCCCEEEEec---------CCcCHHHHHHHHHHHHHhh
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGAC----YLLSKDFGNARVFHE---------NSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----t~lId~~G~iv~~~~---------G~~~~~~L~~~l~~ll~~~ 229 (762)
+.+.+++|+++++++||++.|.+..+.+.|++. +||||++|++++... +..+..++..+|+.++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 76 SPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred CHHHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 678999999999999999999998888888764 699999999997631 3356678999999998876
Q ss_pred ccC
Q 004302 230 QEN 232 (762)
Q Consensus 230 ~~~ 232 (762)
..+
T Consensus 156 ~~~ 158 (171)
T cd02969 156 PVP 158 (171)
T ss_pred CCC
Confidence 544
No 24
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.71 E-value=2.8e-17 Score=157.55 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=98.6
Q ss_pred CCCceeecccCCCccccCCCCC-CEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGG-AFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rG-K~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
..|++.+.+.+|+.++|++++| |++||.|| ++||++| ..++|.|++++++|++ ++||+|+.+.
T Consensus 6 ~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C-------~~~~~~l~~~~~~~~~~~v~vi~vs~d~------ 72 (149)
T cd03018 6 KAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVC-------TKELCALRDSLELFEAAGAEVLGISVDS------ 72 (149)
T ss_pred cCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccH-------HHHHHHHHHHHHHHHhCCCEEEEecCCC------
Confidence 4567888888999999999999 99999998 9999865 9999999999999974 9999998764
Q ss_pred CHHHHHHHHHhcCCCcceeeCCC--CccccccCce----------EEEEcCCCCEEEEecCCc
Q 004302 163 DQTRLVEMLMKEYITFPILLSNK--NFPQMENGAC----------YLLSKDFGNARVFHENSL 213 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~--~~~~~~ygv~----------t~lId~~G~iv~~~~G~~ 213 (762)
.+.+++|+++++++||++.|.+ ..+.+.|++. +||||++|+++..+.|..
T Consensus 73 -~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 73 -PFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred -HHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 6789999999999999999976 6666666652 599999999999998876
No 25
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.71 E-value=4.9e-17 Score=163.57 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=100.8
Q ss_pred ceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC--cCCHH
Q 004302 90 HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS--AVDQT 165 (762)
Q Consensus 90 ~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~--e~~~~ 165 (762)
++...+.+|+.++|++++||+|||+||||||++| . +||.|++|+++|++ ++||||.++. |.. ..+.+
T Consensus 7 ~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~-------~-q~~~L~~L~~~y~~~gl~Vlg~p~nq-f~~qe~~~~~ 77 (183)
T PRK10606 7 TTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLT-------P-QYEQLENIQKAWADQGFVVLGFPCNQ-FLGQEPGSDE 77 (183)
T ss_pred CcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCc-------H-HHHHHHHHHHHHhhCCeEEEEeeccc-cccCCCCCHH
Confidence 4555677778999999999999999999999754 5 79999999999975 9999998864 321 13678
Q ss_pred HHHHHHH-hcCCCccee--eCCCCcc--------cccc--------------------------Cce----EEEEcCCCC
Q 004302 166 RLVEMLM-KEYITFPIL--LSNKNFP--------QMEN--------------------------GAC----YLLSKDFGN 204 (762)
Q Consensus 166 ~v~~f~~-k~~itfPVl--~D~~~~~--------~~~y--------------------------gv~----t~lId~~G~ 204 (762)
++++|++ +++++||++ +|-.+.- ..+. .+. -||||++|+
T Consensus 78 ei~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~ 157 (183)
T PRK10606 78 EIKTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQ 157 (183)
T ss_pred HHHHHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCc
Confidence 8999997 799999999 5543211 0111 123 299999999
Q ss_pred EEEEecCCcCHHH--HHHHHHHHHH
Q 004302 205 ARVFHENSLDIGM--LNKAVEELIM 227 (762)
Q Consensus 205 iv~~~~G~~~~~~--L~~~l~~ll~ 227 (762)
++.+......+.+ |+++|+++|.
T Consensus 158 vv~r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 158 VIQRFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHhc
Confidence 9999888777666 9999988873
No 26
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.69 E-value=1.4e-16 Score=147.81 Aligned_cols=118 Identities=10% Similarity=0.013 Sum_probs=102.5
Q ss_pred CceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHH
Q 004302 89 PHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLV 168 (762)
Q Consensus 89 ~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~ 168 (762)
|+|.+.+.+|+.+++.+++||++||+||++||++| +.++|.|.+++++ +.+++|+.++ .+.+.+.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C-------~~~~~~l~~~~~~---~~~i~i~~~~-----~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVC-------RFTSPTVNQLAAD---YPVVSVALRS-----GDDGAVA 65 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhh-------hhhChHHHHHHhh---CCEEEEEccC-----CCHHHHH
Confidence 45777888888999999999999999999999866 9999999999987 5688888775 3688999
Q ss_pred HHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 169 EMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 169 ~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
+|+++++++||++.|.+..+.+.|++ | ++|||++| ++..+.|..+.+.|.+++
T Consensus 66 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 66 RFMQKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred HHHHHcCCCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhhc
Confidence 99999999999999988777878765 4 49999998 999999999999887653
No 27
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.68 E-value=1.4e-16 Score=151.41 Aligned_cols=115 Identities=11% Similarity=0.022 Sum_probs=97.2
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-----eEEEEEEcCCCccCcC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-----LQVIGFLHGCSTISAV 162 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-----v~VvgV~~~~~~~~e~ 162 (762)
.|+|++.+.+|+++++.+++||++||+||++||++| | ..++|.|.+++++|++ ++||+|+.+. ..+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~----C--~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~---~~d 72 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDV----C--PTTLANLAQALKQLGADGGDDVQVVFISVDP---ERD 72 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCccc----C--HHHHHHHHHHHHHhhHhhcCceEEEEEEECC---CCC
Confidence 468899999999999999999999999999999861 5 9999999999999963 9999999875 123
Q ss_pred CHHHHHHHHHhcCCCcceeeCCC---CccccccCc-----------------e-EEEEcCCCCEEEEecC
Q 004302 163 DQTRLVEMLMKEYITFPILLSNK---NFPQMENGA-----------------C-YLLSKDFGNARVFHEN 211 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~---~~~~~~ygv-----------------~-t~lId~~G~iv~~~~G 211 (762)
+.+.+++|+++++++||++.|.. ..+.++||+ + +||||++|+++.++.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 73 TPEVLKAYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred CHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 67889999999999999999864 455556653 2 5999999999987643
No 28
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.68 E-value=8.4e-17 Score=148.96 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=96.5
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEecc-CCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFV-DNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAt-WC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~ 163 (762)
+.|+|+..+.+|+.++|++++||++||+||++ ||++| ..++|.|++++++|+ +++||+|+.+.
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c-------~~~l~~l~~~~~~~~~~~~~vi~is~d~------- 69 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFC-------QAELPELNELYKKYKDKGVQVIGISTDD------- 69 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHH-------HHHHHHHHHHHHHHHTTTEEEEEEESSS-------
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCcccc-------ccchhHHHHHhhhhccceEEeeeccccc-------
Confidence 45678888999999999999999999999999 99866 999999999999998 49999999864
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCccccccCce----------EEEEcCCCCEEEE
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVF 208 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~ 208 (762)
.+.+++|+++++++||++.|.+..+.+.|++. +||||++|+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 70 PEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 67999999999999999999888777777544 5999999999874
No 29
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.68 E-value=1.9e-16 Score=157.06 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=98.9
Q ss_pred CCCceeecccCC----CccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 87 QGPHHLWFNIVE----DNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 87 ~g~~~~w~n~~g----~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
+.|+|.+.+.+| +.++|++++||++||+|| ++||++| ..++|.|.+++++|.+ ++||+|+.+.
T Consensus 4 ~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C-------~~~l~~l~~~~~~~~~~~v~vv~Is~d~--- 73 (173)
T cd03015 4 KAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVC-------PTEIIAFSDRYEEFKKLNAEVLGVSTDS--- 73 (173)
T ss_pred cCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcC-------HHHHHHHHHHHHHHHHCCCEEEEEecCC---
Confidence 356677777666 689999999999999999 8999855 9999999999999974 9999998764
Q ss_pred CcCCHHHHHHHHHh-------cCCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCc----CHHHH
Q 004302 160 SAVDQTRLVEMLMK-------EYITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSL----DIGML 218 (762)
Q Consensus 160 ~e~~~~~v~~f~~k-------~~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~----~~~~L 218 (762)
.+...+|.++ .+++||++.|.+..+.+.||+. +||||++|+++..+.+.. +.+++
T Consensus 74 ----~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~i 149 (173)
T cd03015 74 ----HFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDET 149 (173)
T ss_pred ----HHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 3344455554 5689999999998888888762 699999999999886654 34445
Q ss_pred HHHHHHH
Q 004302 219 NKAVEEL 225 (762)
Q Consensus 219 ~~~l~~l 225 (762)
.+.|+.+
T Consensus 150 l~~l~~~ 156 (173)
T cd03015 150 LRVLDAL 156 (173)
T ss_pred HHHHHHh
Confidence 5555543
No 30
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.66 E-value=2.9e-15 Score=176.83 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=115.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC------CCcEEEEecCC----CC---CCCC-cccccccCCcceEEEecCCC
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG------NGKILDCIGSC----PG---FEDG-EFESSKLMRPAASFYHKDDD 331 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~------~G~i~~~iGsG----~G---~~DG-~~~~a~fn~P~GIavd~~~g 331 (762)
+-.-|||||-+|.|||+|+.+|+|+++.. .+++..++|.| ++ -+|| .+.+|+|+.|.||++|. .+
T Consensus 408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g 486 (1899)
T KOG4659|consen 408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MG 486 (1899)
T ss_pred ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CC
Confidence 34679999999999999999999999954 46788899986 22 2455 57789999999999994 89
Q ss_pred eEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEE
Q 004302 332 CLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLL 410 (762)
Q Consensus 332 ~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LY 410 (762)
.||+||.. +||++| .+|.|+|+.|+.. .+ - . ...+.......+.+|.+|+.+||+| ||.||
T Consensus 487 ~lYfaD~t--~IR~iD-~~giIstlig~~~-~~--~-------~-----p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~ 548 (1899)
T KOG4659|consen 487 NLYFADGT--RIRVID-TTGIISTLIGTTP-DQ--H-------P-----PRTCAQITKLVDLQLEWPTSLAVDPMDNSLL 548 (1899)
T ss_pred cEEEeccc--EEEEec-cCceEEEeccCCC-Cc--c-------C-----ccccccccchhheeeecccceeecCCCCeEE
Confidence 99999975 599999 5899999988741 11 0 0 0122233456678899999999998 79999
Q ss_pred EEECCCCEEEEEECCCCcEEEEEcCCc
Q 004302 411 IINRSFETLWIMDLASGEIKEAVKGFS 437 (762)
Q Consensus 411 VAD~gN~rI~v~d~~~g~I~ti~~G~g 437 (762)
|.| ||.|.+++.. +.|. |.+|.+
T Consensus 549 Vld--~nvvlrit~~-~rV~-Ii~GrP 571 (1899)
T KOG4659|consen 549 VLD--TNVVLRITVV-HRVR-IILGRP 571 (1899)
T ss_pred Eee--cceEEEEccC-ccEE-EEcCCc
Confidence 999 6888888875 4554 445655
No 31
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.66 E-value=2.2e-16 Score=157.92 Aligned_cols=104 Identities=10% Similarity=-0.013 Sum_probs=88.4
Q ss_pred CCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC
Q 004302 97 VEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI 176 (762)
Q Consensus 97 ~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i 176 (762)
+|+.+++++++ ||+|||+||+|| ++|||.|++++++|+ ++|++|+.++ +. .+
T Consensus 62 dG~~v~lsd~~----lV~FwaswCp~C-------~~e~P~L~~l~~~~g-~~Vi~Vs~D~------~~----------~~ 113 (181)
T PRK13728 62 NGRQVNLADWK----VVLFMQGHCPYC-------HQFDPVLKQLAQQYG-FSVFPYTLDG------QG----------DT 113 (181)
T ss_pred CCCEeehhHce----EEEEECCCCHhH-------HHHHHHHHHHHHHcC-CEEEEEEeCC------CC----------CC
Confidence 78899999998 778999999866 999999999999995 9999999886 11 26
Q ss_pred CcceeeC-CCCccccccC-----ce-EEEEcCCCCEEE-EecCCcCHHHHHHHHHHHHHh
Q 004302 177 TFPILLS-NKNFPQMENG-----AC-YLLSKDFGNARV-FHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 177 tfPVl~D-~~~~~~~~yg-----v~-t~lId~~G~iv~-~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+||+++| .+..+...|+ +| +||||++|+++. .+.|..+.++|++.|.++++.
T Consensus 114 ~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 114 AFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 9999996 4444444555 45 699999999975 799999999999999999976
No 32
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.66 E-value=2.4e-16 Score=158.88 Aligned_cols=123 Identities=10% Similarity=-0.025 Sum_probs=96.8
Q ss_pred CCCceeecc-cCCC--ccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccC
Q 004302 87 QGPHHLWFN-IVED--NIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTIS 160 (762)
Q Consensus 87 ~g~~~~w~n-~~g~--~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~ 160 (762)
..|+|.+.+ .+|+ .+++++++||+|||+|| ++||++| ..|||.|.+++++|.+ ++||+|+.+.
T Consensus 7 ~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C-------~~el~~l~~~~~~~~~~gv~vi~VS~D~---- 75 (187)
T TIGR03137 7 EIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVC-------PTELEDLADKYAELKKLGVEVYSVSTDT---- 75 (187)
T ss_pred cCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcC-------HHHHHHHHHHHHHHHhcCCcEEEEeCCC----
Confidence 466777776 3555 68888999999999999 9999865 9999999999999964 9999999875
Q ss_pred cCCHHHHHHHHHhc----CCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCCc----CHHHHHHHH
Q 004302 161 AVDQTRLVEMLMKE----YITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENSL----DIGMLNKAV 222 (762)
Q Consensus 161 e~~~~~v~~f~~k~----~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~~----~~~~L~~~l 222 (762)
....++|.+.. +++||++.|.+..+.+.||+ | +||||++|+|+..+.... +.+++.+.|
T Consensus 76 ---~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l 152 (187)
T TIGR03137 76 ---HFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKI 152 (187)
T ss_pred ---HHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 45566666543 79999999998888888875 3 699999999999765432 444455554
Q ss_pred H
Q 004302 223 E 223 (762)
Q Consensus 223 ~ 223 (762)
+
T Consensus 153 ~ 153 (187)
T TIGR03137 153 K 153 (187)
T ss_pred H
Confidence 4
No 33
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.66 E-value=6e-16 Score=156.17 Aligned_cols=122 Identities=13% Similarity=-0.033 Sum_probs=95.8
Q ss_pred CCCceeecccCCCccccC--CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCH
Q 004302 87 QGPHHLWFNIVEDNIHFF--KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Ls--d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~ 164 (762)
+.|+|.+.+.+|+.+++. +++||++||+|||+||++| ++++|.++++++++ ++.|++|+.+ +.
T Consensus 51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C-------~~~lp~l~~~~~~~-~~~vv~Is~~-------~~ 115 (189)
T TIGR02661 51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVC-------DKLFPIIKSIARAE-ETDVVMISDG-------TP 115 (189)
T ss_pred cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhH-------HHHHHHHHHHHHhc-CCcEEEEeCC-------CH
Confidence 577889999999999994 5799999999999999866 99999999999875 4778888743 56
Q ss_pred HHHHHHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 165 TRLVEMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 165 ~~v~~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+.+++|+++++++||.+.. ...+.+.|++ | +|+||++|+++.... ....+.+++.++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~i~~~y~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll~~l 178 (189)
T TIGR02661 116 AEHRRFLKDHELGGERYVV-SAEIGMAFQVGKIPYGVLLDQDGKIRAKGL-TNTREHLESLLEAD 178 (189)
T ss_pred HHHHHHHHhcCCCcceeec-hhHHHHhccCCccceEEEECCCCeEEEccC-CCCHHHHHHHHHHH
Confidence 7899999999999987653 3455666764 5 599999999998632 23445566666543
No 34
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.64 E-value=6.4e-16 Score=146.22 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=98.1
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCCH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~~ 164 (762)
.|+|.+.+.+|+.++|++++||++||+|| ++||++| ..++|.|.+++++|. +++||+|+.+ +.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C-------~~~~~~l~~~~~~~~~~~~~~i~is~d-------~~ 67 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVC-------TTELCAFRDLAEEFAKGGAEVLGVSVD-------SP 67 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcC-------HHHHHHHHHHHHHHHHCCCEEEEEeCC-------CH
Confidence 46788889999999999999999999999 7899755 999999999999985 3999999876 36
Q ss_pred HHHHHHHHhc-CCCcceeeCCCCccccccCce-------------EEEEcCCCCEEEEecCCcC
Q 004302 165 TRLVEMLMKE-YITFPILLSNKNFPQMENGAC-------------YLLSKDFGNARVFHENSLD 214 (762)
Q Consensus 165 ~~v~~f~~k~-~itfPVl~D~~~~~~~~ygv~-------------t~lId~~G~iv~~~~G~~~ 214 (762)
+.+++|++++ +.+||++.|.+..+.+.||+. +||||++|+++.++.|...
T Consensus 68 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 68 FSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHHHHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 7899999999 999999999887766666532 4999999999999988765
No 35
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.63 E-value=6.3e-16 Score=147.37 Aligned_cols=110 Identities=8% Similarity=0.023 Sum_probs=91.4
Q ss_pred CCceeecccCCCccccCCCC-CCEEEEEE-eccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCC
Q 004302 88 GPHHLWFNIVEDNIHFFKRG-GAFLVLAG-RFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVD 163 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~r-GK~VvLnF-WAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~ 163 (762)
.|+|.+.+.+|+.+++++++ ||++||.| |++||++| +.+||.|.+++++|. +++||+|+.+.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C-------~~~~~~l~~~~~~~~~~~v~vv~V~~~~------- 67 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFC-------REYLRALSKLLPELDALGVELVAVGPES------- 67 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhH-------HHHHHHHHHHHHHHHhcCeEEEEEeCCC-------
Confidence 45677778888899999875 46555555 79999866 999999999999995 49999999775
Q ss_pred HHHHHHHHHhcCCCcceeeCCCCccccccCc------------------------------e---EEEEcCCCCEEEEec
Q 004302 164 QTRLVEMLMKEYITFPILLSNKNFPQMENGA------------------------------C---YLLSKDFGNARVFHE 210 (762)
Q Consensus 164 ~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv------------------------------~---t~lId~~G~iv~~~~ 210 (762)
.+...+|.++++++||++.|.+..+.++||+ . +||||++|+|++.+.
T Consensus 68 ~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 68 PEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred HHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 4566789999999999999998777777765 2 599999999999887
Q ss_pred C
Q 004302 211 N 211 (762)
Q Consensus 211 G 211 (762)
|
T Consensus 148 ~ 148 (149)
T cd02970 148 D 148 (149)
T ss_pred C
Confidence 6
No 36
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.63 E-value=1.1e-15 Score=154.46 Aligned_cols=131 Identities=8% Similarity=-0.027 Sum_probs=102.9
Q ss_pred hcCCCCCCCceeecccCCCccccCCCCCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCC
Q 004302 81 STFNEFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCS 157 (762)
Q Consensus 81 stl~~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~ 157 (762)
...+++..+.+. +.+...++|++++||+|||+|| ++||++| ..|||.|.+++++|.+ ++||||+.+.
T Consensus 6 ~~~p~f~~~~~~--~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C-------~~el~~l~~~~~~f~~~g~~vigIS~D~- 75 (187)
T PRK10382 6 TKIKPFKNQAFK--NGEFIEVTEKDTEGRWSVFFFYPADFTFVC-------PTELGDVADHYEELQKLGVDVYSVSTDT- 75 (187)
T ss_pred CcCCCcEEEEEe--CCcceEEEHHHhCCCeEEEEEECCCCCCcC-------HHHHHHHHHHHHHHHhCCCEEEEEeCCC-
Confidence 344555555433 3445578889999999999999 9999865 9999999999999964 9999999874
Q ss_pred ccCcCCHHHHHHHHHh----cCCCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEecCC----cCHHHHH
Q 004302 158 TISAVDQTRLVEMLMK----EYITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFHENS----LDIGMLN 219 (762)
Q Consensus 158 ~~~e~~~~~v~~f~~k----~~itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~~G~----~~~~~L~ 219 (762)
....++|.++ .+++||++.|.+..+.++||+ | +||||++|+|++.+... -+.+++.
T Consensus 76 ------~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil 149 (187)
T PRK10382 76 ------HFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLL 149 (187)
T ss_pred ------HHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHH
Confidence 6778888876 489999999998888888876 3 59999999999876443 3456666
Q ss_pred HHHHHHHH
Q 004302 220 KAVEELIM 227 (762)
Q Consensus 220 ~~l~~ll~ 227 (762)
+.|+.+.-
T Consensus 150 ~~l~alq~ 157 (187)
T PRK10382 150 RKIKAAQY 157 (187)
T ss_pred HHHHhhhh
Confidence 66665554
No 37
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.63 E-value=8.7e-16 Score=156.73 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=99.8
Q ss_pred CCceeecccCCCccccCCCCCCEEEE-EEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCH
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVL-AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvL-nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~ 164 (762)
.|+|...+..| .++|++++||++|| +||++||++| ..|||.|.+++++|++ ++||||+.+. .
T Consensus 8 aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C-------~~El~~l~~~~~~f~~~~~~vi~vS~D~-------~ 72 (202)
T PRK13190 8 APDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVC-------TTEFIAFSRRYEDFKKLGVELVGLSVDS-------I 72 (202)
T ss_pred CCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEeCCC-------H
Confidence 45566666665 69999999998776 7999999865 9999999999999974 9999999875 2
Q ss_pred HH----HHHHHHhcC--CCcceeeCCCCccccccCc---------e-EEEEcCCCCEEEEe----cCCcCHHHHHHHHHH
Q 004302 165 TR----LVEMLMKEY--ITFPILLSNKNFPQMENGA---------C-YLLSKDFGNARVFH----ENSLDIGMLNKAVEE 224 (762)
Q Consensus 165 ~~----v~~f~~k~~--itfPVl~D~~~~~~~~ygv---------~-t~lId~~G~iv~~~----~G~~~~~~L~~~l~~ 224 (762)
.. ++++.++.+ ++||++.|.+..+.++||+ | +||||++|+|+..+ .+..+.+++.+.|+.
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 33 344555666 5899999999888888885 4 59999999999876 444577888888887
Q ss_pred HHH
Q 004302 225 LIM 227 (762)
Q Consensus 225 ll~ 227 (762)
++.
T Consensus 153 l~~ 155 (202)
T PRK13190 153 LQV 155 (202)
T ss_pred hhh
Confidence 765
No 38
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.63 E-value=5.1e-16 Score=147.15 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=80.2
Q ss_pred cccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCcCCHHHHHH
Q 004302 94 FNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISAVDQTRLVE 169 (762)
Q Consensus 94 ~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e~~~~~v~~ 169 (762)
+|.+ ++++|++++||+|||+|||+||++| +++||.|++++++|+ +++|++|+.+. +.+.+.+
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~C-------~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~------~~~~~~~ 69 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFSASWCPPC-------RAFTPKLVEFYEKLKEEGKNFEIVFVSRDR------SEESFNE 69 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEECCCCchH-------HHHHHHHHHHHHHHhhcCCCeEEEEEecCC------CHHHHHH
Confidence 3444 5999999999999999999999866 999999999999886 38999999886 6788999
Q ss_pred HHHhcCCCccee-eCC---CCcccccc---Cce-EEEEcCCCCEEEEecC
Q 004302 170 MLMKEYITFPIL-LSN---KNFPQMEN---GAC-YLLSKDFGNARVFHEN 211 (762)
Q Consensus 170 f~~k~~itfPVl-~D~---~~~~~~~y---gv~-t~lId~~G~iv~~~~G 211 (762)
|+++++ .++.+ .+. ...+.+.| ++| ++|||++|+++.+...
T Consensus 70 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~ 118 (132)
T cd02964 70 YFSEMP-PWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNAR 118 (132)
T ss_pred HHhcCC-CeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHH
Confidence 999997 54433 222 12334445 456 5899999999876543
No 39
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.62 E-value=3.3e-15 Score=133.54 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=95.4
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcCCHHHHH
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAVDQTRLV 168 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~~~~~v~ 168 (762)
|.+.+.+|+.+++.+++||+++|.||++||++| ...+|.|.+++++|+ ++.|++|+.+. .+.+.++
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~~v~~d~-----~~~~~~~ 69 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPC-------RAEMPELEALAKEYKDDGVEVVGVNVDD-----DDPAAVK 69 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhH-------HHHhHHHHHHHHHhCCCCeEEEEEECCC-----CCHHHHH
Confidence 556677788999999999999999999999865 999999999999995 59999999886 1489999
Q ss_pred HHHHhcCCCcceeeCCCCccccccCc---e-EEEEcCCCCEEEEecC
Q 004302 169 EMLMKEYITFPILLSNKNFPQMENGA---C-YLLSKDFGNARVFHEN 211 (762)
Q Consensus 169 ~f~~k~~itfPVl~D~~~~~~~~ygv---~-t~lId~~G~iv~~~~G 211 (762)
+|+++++++||++.|....+...|++ | ++|+|++|+++.+..|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 70 AFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 99999999999999987777777765 4 5999999999988765
No 40
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.61 E-value=5.5e-16 Score=146.15 Aligned_cols=104 Identities=7% Similarity=-0.063 Sum_probs=81.4
Q ss_pred cccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCcCCHHHHHH
Q 004302 94 FNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISAVDQTRLVE 169 (762)
Q Consensus 94 ~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e~~~~~v~~ 169 (762)
.+.+|+.++|++++||+|||+|||+||++| ++++|.|++++++|. +++|++|+.+. +.+.+.+
T Consensus 4 ~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C-------~~~~p~l~~~~~~~~~~~~~~~vv~is~d~------~~~~~~~ 70 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVGLYFSASWCPPC-------RAFTPKLVEFYEKLKESGKNFEIVFISWDR------DEESFND 70 (131)
T ss_pred cccCCCCccHHHhCCcEEEEEEECCCChHH-------HHHhHHHHHHHHHHHhcCCCEEEEEEECCC------CHHHHHH
Confidence 466788999999999999999999999866 999999999998875 49999999886 5678899
Q ss_pred HHHhcCC-Ccceee-CCCCccccccC---ce-EEEEcCCCCEEEEec
Q 004302 170 MLMKEYI-TFPILL-SNKNFPQMENG---AC-YLLSKDFGNARVFHE 210 (762)
Q Consensus 170 f~~k~~i-tfPVl~-D~~~~~~~~yg---v~-t~lId~~G~iv~~~~ 210 (762)
|+++.+. .+|... |....+.++|+ +| ++|||++|+++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 71 YFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDA 117 (131)
T ss_pred HHHcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccH
Confidence 9988753 233222 22234555665 45 599999999987643
No 41
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.61 E-value=2.3e-15 Score=153.72 Aligned_cols=147 Identities=12% Similarity=0.160 Sum_probs=109.3
Q ss_pred CCceeecccCCCccccCCCCC-CEE-EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGG-AFL-VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rG-K~V-vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
.|+|++.+.+| .++|++++| |++ |++||++||++| ..|||.|.+++++|++ ++||||+.+.
T Consensus 5 aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C-------~~el~~l~~~~~~f~~~gv~vigvS~D~------- 69 (203)
T cd03016 5 APNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVC-------TTELGAFAKLAPEFKKRNVKLIGLSVDS------- 69 (203)
T ss_pred CCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcC-------HHHHHHHHHHHHHHHHcCCEEEEEECCC-------
Confidence 56677777776 589999999 765 559999999865 9999999999999974 9999999875
Q ss_pred HHHHHHHHHh------cCCCcceeeCCCCccccccCce------------EEEEcCCCCEEEEecCCc----CHHHHHHH
Q 004302 164 QTRLVEMLMK------EYITFPILLSNKNFPQMENGAC------------YLLSKDFGNARVFHENSL----DIGMLNKA 221 (762)
Q Consensus 164 ~~~v~~f~~k------~~itfPVl~D~~~~~~~~ygv~------------t~lId~~G~iv~~~~G~~----~~~~L~~~ 221 (762)
.....+|+++ .+++||++.|.+..+.++||+. +||||++|+|+..+.+.. +.+++.++
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~ 149 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRV 149 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 3444444443 7899999999998888888752 599999999999887643 45677777
Q ss_pred HHHHHHhhccCCCCCCCccchhhhhhhhccCC
Q 004302 222 VEELIMQQQENSSSPSGLKCTWAKQAEVLKEP 253 (762)
Q Consensus 222 l~~ll~~~~~~s~~~~~~~~~~~~~~~~~~~~ 253 (762)
|+.+.... + ....-+..|..-.+++..|
T Consensus 150 l~~lq~~~--~--~~~~~p~~w~~g~~~~~~~ 177 (203)
T cd03016 150 VDALQLTD--K--HKVATPANWKPGDDVIVPP 177 (203)
T ss_pred HHHHhhHh--h--cCcCcCCCCCCCCceecCC
Confidence 77764432 1 1233455676656666543
No 42
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.59 E-value=6e-15 Score=152.12 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCCceeecccCCCccccCCCCCCEE-EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFL-VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD 163 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~V-vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~ 163 (762)
+.|+|+..+.+|+...+++++||++ |+.|||+||++| ..|||.|.+++++|.+ ++||||+.+. ..+
T Consensus 7 ~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvC-------t~El~~l~~~~~~f~~~gv~vigIS~D~----~~~ 75 (215)
T PRK13599 7 KFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVC-------TTEFVEFARKANDFKELNTELIGLSVDQ----VFS 75 (215)
T ss_pred CCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcC-------HHHHHHHHHHHHHHHHCCCEEEEEeCCC----HHH
Confidence 4677888888888888899999985 679999999866 9999999999999964 9999999875 012
Q ss_pred HHHHHHHHHh---cCCCcceeeCCCCccccccCc----------e-EEEEcCCCCEEEEecCC----cCHHHHHHHHHHH
Q 004302 164 QTRLVEMLMK---EYITFPILLSNKNFPQMENGA----------C-YLLSKDFGNARVFHENS----LDIGMLNKAVEEL 225 (762)
Q Consensus 164 ~~~v~~f~~k---~~itfPVl~D~~~~~~~~ygv----------~-t~lId~~G~iv~~~~G~----~~~~~L~~~l~~l 225 (762)
...+.+++++ .+++||++.|.+..+.++||+ | +||||++|+|+..+... -+.+++.++|+.|
T Consensus 76 ~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 76 HIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2345566664 479999999998888888875 3 59999999999876432 2466777777765
Q ss_pred HH
Q 004302 226 IM 227 (762)
Q Consensus 226 l~ 227 (762)
..
T Consensus 156 q~ 157 (215)
T PRK13599 156 QT 157 (215)
T ss_pred hh
Confidence 44
No 43
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.58 E-value=4.2e-15 Score=145.57 Aligned_cols=101 Identities=14% Similarity=-0.008 Sum_probs=76.5
Q ss_pred CCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 98 EDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 98 g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
|+.++++++ .||||||+||+|| ++|||.|++++++| +++|++|+.++ .. + -+
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppC-------r~e~P~L~~l~~~~-~~~Vi~Vs~d~------~~--~--------~~ 95 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYC-------HQFAPVLKRFSQQF-GLPVYAFSLDG------QG--L--------TG 95 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhH-------HHHHHHHHHHHHHc-CCcEEEEEeCC------Cc--c--------cc
Confidence 446666654 4999999999866 99999999999999 48899999875 11 1 15
Q ss_pred cceeeCCCCccc-ccc------Cce-EEEEcCCCCEEE-EecCCcCHHHHHHHHHHHH
Q 004302 178 FPILLSNKNFPQ-MEN------GAC-YLLSKDFGNARV-FHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 178 fPVl~D~~~~~~-~~y------gv~-t~lId~~G~iv~-~~~G~~~~~~L~~~l~~ll 226 (762)
||+++|.+.... ..| ++| +||||++|+++. .+.|..+.+++++.|++++
T Consensus 96 fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 96 FPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred cccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 777775433322 223 457 599999988654 7899999999999988764
No 44
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.1e-14 Score=137.69 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=104.8
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
.-++|+|++.|.+|+.++|++++||+|||+|+--.- ||+| -.|+=.+.+.+++|.. .+||||+.|
T Consensus 7 G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~----TpgC--T~Ea~~Frd~~~ef~~~~a~V~GIS~D------- 73 (157)
T COG1225 7 GDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDF----TPGC--TTEACDFRDLLEEFEKLGAVVLGISPD------- 73 (157)
T ss_pred CCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCC----CCcc--hHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 346899999999999999999999999999996655 3688 7888888888888875 999999887
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCce----------------EEEEcCCCCEEEEecCC---cCHHHHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGAC----------------YLLSKDFGNARVFHENS---LDIGMLNKAVE 223 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~----------------t~lId~~G~iv~~~~G~---~~~~~L~~~l~ 223 (762)
+..+.++|.+|++++||+|-|.+..+.++||+- |||||++|+|+..+... .+.+++.++|+
T Consensus 74 s~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~ 153 (157)
T COG1225 74 SPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALK 153 (157)
T ss_pred CHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHH
Confidence 489999999999999999999998888777651 69999999999877332 22334444444
Q ss_pred H
Q 004302 224 E 224 (762)
Q Consensus 224 ~ 224 (762)
+
T Consensus 154 ~ 154 (157)
T COG1225 154 K 154 (157)
T ss_pred H
Confidence 3
No 45
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.52 E-value=2.4e-14 Score=127.32 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=70.0
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
||+++|+|||+||+|| ++++|.|++++++|+ +++||+|+.++ +.+.+++++++.+.+++.+...
T Consensus 1 gK~~ll~fwa~~c~~c-------~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~------~~~~~~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPC-------KKELPKLKELYKKYKKKDDVEFVFVSLDE------DEEEWKKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE-TTSHHH-------HHHHHHHHHHHHHHTTTTTEEEEEEE-SS------SHHHHHHHHHTCTTSSEEEETT
T ss_pred CCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhCCCCCEEEEEEEeCC------CHHHHHHHHHhcCCCceEEeeC
Confidence 8999999999999876 999999999999999 39999999987 7899999999998887665544
Q ss_pred C---CccccccC---ce-EEEEcCCCCE
Q 004302 185 K---NFPQMENG---AC-YLLSKDFGNA 205 (762)
Q Consensus 185 ~---~~~~~~yg---v~-t~lId~~G~i 205 (762)
. ..+.+.|+ +| ++|+|++|+|
T Consensus 68 ~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 DDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp THHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred cchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 3 34455565 45 6999999986
No 46
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.52 E-value=5e-14 Score=145.28 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCceeecccCCCcccc-CCCCCCEEEE-EEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcC
Q 004302 87 QGPHHLWFNIVEDNIHF-FKRGGAFLVL-AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~L-sd~rGK~VvL-nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~ 162 (762)
..|+|+..+.+|+ +.+ ++++||++|| +||++||++| ..|||.|.+++++|. +++||||+.+. ..
T Consensus 12 ~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC-------~tEl~~l~~~~~ef~~~g~~VigvS~Ds----~~ 79 (215)
T PRK13191 12 KFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVC-------TTEFYSFAKKYEEFKKLNTELIGLSVDS----NI 79 (215)
T ss_pred cCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcC-------HHHHHHHHHHHHHHHHCCCEEEEEECCC----HH
Confidence 4566777777775 556 4589998776 9999999866 999999999999996 49999999885 11
Q ss_pred CHHHHHHHHHh---cCCCcceeeCCCCccccccCc----------e-EEEEcCCCCEEEEecCCc----CHHHHHHHHHH
Q 004302 163 DQTRLVEMLMK---EYITFPILLSNKNFPQMENGA----------C-YLLSKDFGNARVFHENSL----DIGMLNKAVEE 224 (762)
Q Consensus 163 ~~~~v~~f~~k---~~itfPVl~D~~~~~~~~ygv----------~-t~lId~~G~iv~~~~G~~----~~~~L~~~l~~ 224 (762)
...++.+++++ .+++||++.|.+..+.++||+ | +||||++|+|+..+.+.. +.+++.+.|+.
T Consensus 80 ~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 80 SHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 12234555654 478999999999888888874 3 599999999999765442 45566666666
Q ss_pred HH
Q 004302 225 LI 226 (762)
Q Consensus 225 ll 226 (762)
+.
T Consensus 160 lq 161 (215)
T PRK13191 160 LQ 161 (215)
T ss_pred hh
Confidence 54
No 47
>PRK15000 peroxidase; Provisional
Probab=99.51 E-value=7.5e-14 Score=142.43 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=93.0
Q ss_pred CCCceeecccC--CC---ccccCCC-CCCEEEEEEecc-CCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCC
Q 004302 87 QGPHHLWFNIV--ED---NIHFFKR-GGAFLVLAGRFV-DNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCS 157 (762)
Q Consensus 87 ~g~~~~w~n~~--g~---~v~Lsd~-rGK~VvLnFWAt-WC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~ 157 (762)
..|+|+..+.. |+ .++|+++ +||+|||+||++ ||++ | ..|||.|.+++++|.+ ++||||+.+.
T Consensus 7 ~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~v-----C--~~El~~l~~~~~~f~~~g~~vigvS~D~- 78 (200)
T PRK15000 7 QAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFV-----C--PSELIAFDKRYEEFQKRGVEVVGVSFDS- 78 (200)
T ss_pred cCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCC-----C--HHHHHHHHHHHHHHHHCCCEEEEEECCC-
Confidence 45566666643 33 3455665 899999999996 7765 5 9999999999999974 9999999875
Q ss_pred ccCcCCHHHHHH----HHHhcC---CCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCcC----HH
Q 004302 158 TISAVDQTRLVE----MLMKEY---ITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSLD----IG 216 (762)
Q Consensus 158 ~~~e~~~~~v~~----f~~k~~---itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~~----~~ 216 (762)
....++ +.++.+ ++||++.|.+..+.+.||+. +||||++|+|+..+.+... .+
T Consensus 79 ------~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~ 152 (200)
T PRK15000 79 ------EFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNID 152 (200)
T ss_pred ------HHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 333333 344444 69999999998888887753 5999999999998777543 45
Q ss_pred HHHHHHHHHH
Q 004302 217 MLNKAVEELI 226 (762)
Q Consensus 217 ~L~~~l~~ll 226 (762)
++.+.|+.+.
T Consensus 153 eilr~l~al~ 162 (200)
T PRK15000 153 EMLRMVDALQ 162 (200)
T ss_pred HHHHHHHHhh
Confidence 5555665544
No 48
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.50 E-value=1.1e-13 Score=146.27 Aligned_cols=126 Identities=8% Similarity=-0.049 Sum_probs=95.2
Q ss_pred CCCceeecc---cCCCccccCCC-CCCEEEEEEe-ccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc
Q 004302 87 QGPHHLWFN---IVEDNIHFFKR-GGAFLVLAGR-FVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI 159 (762)
Q Consensus 87 ~g~~~~w~n---~~g~~v~Lsd~-rGK~VvLnFW-AtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~ 159 (762)
..|+|+..+ .++..++|+++ +||+|||.|| ++||++| ..|||.|.+++++|.+ ++||||+.|.
T Consensus 73 ~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvC-------t~El~~l~~~~~ef~~~gv~VigIS~Ds--- 142 (261)
T PTZ00137 73 LMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVC-------PSELLGFSERLKEFEERGVKVLGVSVDS--- 142 (261)
T ss_pred CCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCC---
Confidence 345555444 33346899998 9999999988 8999866 9999999999999964 9999999874
Q ss_pred CcCCHHHHHHHHHh-------cCCCcceeeCCCCccccccCc--------e-EEEEcCCCCEEEEecCC----cCHHHHH
Q 004302 160 SAVDQTRLVEMLMK-------EYITFPILLSNKNFPQMENGA--------C-YLLSKDFGNARVFHENS----LDIGMLN 219 (762)
Q Consensus 160 ~e~~~~~v~~f~~k-------~~itfPVl~D~~~~~~~~ygv--------~-t~lId~~G~iv~~~~G~----~~~~~L~ 219 (762)
....++|.++ .+++||++.|.+..+.++||+ | +||||++|+|++.+... -+.+++.
T Consensus 143 ----~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiL 218 (261)
T PTZ00137 143 ----PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETL 218 (261)
T ss_pred ----HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHH
Confidence 3444555442 588999999998888888886 3 59999999999876332 2455555
Q ss_pred HHHHHHH
Q 004302 220 KAVEELI 226 (762)
Q Consensus 220 ~~l~~ll 226 (762)
++|+.+.
T Consensus 219 r~l~alq 225 (261)
T PTZ00137 219 RLFDAVQ 225 (261)
T ss_pred HHHHHhc
Confidence 5665544
No 49
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.49 E-value=8.1e-14 Score=141.77 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=90.4
Q ss_pred ccCCCccccCCCCCCEEEEEEec-cCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHH
Q 004302 95 NIVEDNIHFFKRGGAFLVLAGRF-VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEML 171 (762)
Q Consensus 95 n~~g~~v~Lsd~rGK~VvLnFWA-tWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~ 171 (762)
|.+|++++|++++||++||+||+ +||+. | ..|++.|.+++++|.+ ++||+|+.+. .....++.
T Consensus 23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~-----C--~~e~~~l~~~~~~f~~~g~~vv~IS~d~-------~~~~~~~~ 88 (199)
T PTZ00253 23 NGSFKKISLSSYKGKWVVLFFYPLDFTFV-----C--PTEIIQFSDSVKRFNELNCEVLACSMDS-------EYAHLQWT 88 (199)
T ss_pred CCCCcEEeHHHHCCCEEEEEEEcCCCCCc-----C--HHHHHHHHHHHHHHHHcCCEEEEEeCCC-------HHHHHHHH
Confidence 55677999999999999999996 67864 5 9999999999999984 9999999875 22223332
Q ss_pred H--h-----cCCCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCcCHH-HHHHHHHHHHH
Q 004302 172 M--K-----EYITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSLDIG-MLNKAVEELIM 227 (762)
Q Consensus 172 ~--k-----~~itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~~~~-~L~~~l~~ll~ 227 (762)
. + .+++||++.|.+..+.++||+. +||||++|+++..+.+..... .++++++.|..
T Consensus 89 ~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 89 LQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred hChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 1 1 1489999999998888888762 599999999999887754422 35555554443
No 50
>PRK13189 peroxiredoxin; Provisional
Probab=99.49 E-value=8.8e-14 Score=144.13 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=95.9
Q ss_pred CCCceeecccCCCccccCC-CCCCEEE-EEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC
Q 004302 87 QGPHHLWFNIVEDNIHFFK-RGGAFLV-LAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd-~rGK~Vv-LnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~ 162 (762)
..|+|+..+..|+ +++.+ ++||+|| ++||++||++| ..||+.|.+++++|.+ ++||||+.+.
T Consensus 14 ~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC-------~tEl~~l~~~~~ef~~~~v~VigvS~D~------ 79 (222)
T PRK13189 14 KFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVC-------TTEFVAFQKRYDEFRELNTELIGLSIDQ------ 79 (222)
T ss_pred cCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCC-------HHHHHHHHHHHHHHHHcCCEEEEEECCC------
Confidence 4566666666664 77877 5999655 59999999866 9999999999999964 9999999885
Q ss_pred CHHHHHHHHHh------cCCCcceeeCCCCccccccCc----------e-EEEEcCCCCEEEEecCCc----CHHHHHHH
Q 004302 163 DQTRLVEMLMK------EYITFPILLSNKNFPQMENGA----------C-YLLSKDFGNARVFHENSL----DIGMLNKA 221 (762)
Q Consensus 163 ~~~~v~~f~~k------~~itfPVl~D~~~~~~~~ygv----------~-t~lId~~G~iv~~~~G~~----~~~~L~~~ 221 (762)
.....+|++. .+++||++.|.+..+.++||+ | +||||++|+|+..+.+.. +.+++.+.
T Consensus 80 -~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~ 158 (222)
T PRK13189 80 -VFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRL 158 (222)
T ss_pred -HHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 3344444432 358999999999888888774 2 599999999998876433 46677777
Q ss_pred HHHHHH
Q 004302 222 VEELIM 227 (762)
Q Consensus 222 l~~ll~ 227 (762)
|+.+..
T Consensus 159 l~alq~ 164 (222)
T PRK13189 159 VKALQT 164 (222)
T ss_pred HHHhhh
Confidence 776644
No 51
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.41 E-value=6e-11 Score=123.32 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=119.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
.|-|++.++.++.||++|..+++|++++.++.....+- +..|.|++++..++.|||++..+ +++
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--------------~~~~~G~~~~~~~g~l~v~~~~~--~~~ 64 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--------------LPGPNGMAFDRPDGRLYVADSGG--IAV 64 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--------------SSSEEEEEEECTTSEEEEEETTC--EEE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--------------cCCCceEEEEccCCEEEEEEcCc--eEE
Confidence 36789999779999999999999999999776665542 22399999994479999999755 566
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCC--------C
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSF--------E 417 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN--------~ 417 (762)
+|+.++.+++++-.-. + ...++.|-+++++++|+||++|.+. .
T Consensus 65 ~d~~~g~~~~~~~~~~----------------~-------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPD----------------G-------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EETTTTEEEEEEEEET----------------T-------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred EecCCCcEEEEeeccC----------------C-------------CcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 6999999988864310 0 1247789999999999999999877 5
Q ss_pred EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 418 TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 418 rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
+|++++.+ +.+..+..+. . .+.|.+++.++..|||+|+.
T Consensus 116 ~v~~~~~~-~~~~~~~~~~-------------------------------------~---~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVADGL-------------------------------------G---FPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEETT-SEEEEEEEEE-------------------------------------S---SEEEEEEETTSSEEEEEETT
T ss_pred ceEEECCC-CeEEEEecCc-------------------------------------c---cccceEECCcchheeecccc
Confidence 68899887 6655442110 1 12457787888899999999
Q ss_pred CCEEEEEECC
Q 004302 498 GQRIMRLNRE 507 (762)
Q Consensus 498 NhRIrkidl~ 507 (762)
+++|.+++++
T Consensus 155 ~~~i~~~~~~ 164 (246)
T PF08450_consen 155 NGRIWRFDLD 164 (246)
T ss_dssp TTEEEEEEEE
T ss_pred cceeEEEecc
Confidence 9999999996
No 52
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.41 E-value=9.9e-13 Score=119.85 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=70.1
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
++.+||+|||+|||+||+|| +.++|.|++|+++|+++.|+.|+.++ + ....++.+++++
T Consensus 11 ~~~~~k~vvv~F~a~wC~~C-------~~~~p~l~~la~~~~~v~~~~vd~d~------~-~~~~~l~~~~~V------- 69 (103)
T cd02985 11 KKAKGRLVVLEFALKHSGPS-------VKIYPTMVKLSRTCNDVVFLLVNGDE------N-DSTMELCRREKI------- 69 (103)
T ss_pred HHcCCCEEEEEEECCCCHhH-------HHHhHHHHHHHHHCCCCEEEEEECCC------C-hHHHHHHHHcCC-------
Confidence 34579999999999999876 99999999999999779999999775 2 234455555542
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++||+++-++|+++.++.|... ++|.+.+.
T Consensus 70 --------~~~Pt~~~~~~G~~v~~~~G~~~-~~l~~~~~ 100 (103)
T cd02985 70 --------IEVPHFLFYKDGEKIHEEEGIGP-DELIGDVL 100 (103)
T ss_pred --------CcCCEEEEEeCCeEEEEEeCCCH-HHHHHHHH
Confidence 24677777799999999999665 56665554
No 53
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.41 E-value=8.1e-13 Score=127.76 Aligned_cols=98 Identities=8% Similarity=0.020 Sum_probs=78.2
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
.+||+|||+|||+||++| +.++|.|.+++++|++ +.|+.|+++. + ...++++++++
T Consensus 18 ~~gk~vvV~F~A~WC~~C-------~~~~p~l~~l~~~~~~~~~~v~v~vd~------~--~~~~~~~~~~V-------- 74 (142)
T cd02950 18 SNGKPTLVEFYADWCTVC-------QEMAPDVAKLKQKYGDQVNFVMLNVDN------P--KWLPEIDRYRV-------- 74 (142)
T ss_pred hCCCEEEEEEECCcCHHH-------HHhHHHHHHHHHHhccCeeEEEEEcCC------c--ccHHHHHHcCC--------
Confidence 579999999999999876 9999999999999987 8899998775 1 12233333332
Q ss_pred CCccccccCce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCC
Q 004302 185 KNFPQMENGAC-YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENS 233 (762)
Q Consensus 185 ~~~~~~~ygv~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s 233 (762)
.++| +++|+++|+++.+..|....++|++.|+++++....|+
T Consensus 75 -------~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~~~~~ 117 (142)
T cd02950 75 -------DGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGEPLPY 117 (142)
T ss_pred -------CCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCCCCCc
Confidence 2456 47889999999999999999999999999998754443
No 54
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.34 E-value=1.3e-11 Score=146.77 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=119.3
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCC-----CCC--CC-CcccccccCCcceEEEecCCC
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSC-----PGF--ED-GEFESSKLMRPAASFYHKDDD 331 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG-----~G~--~D-G~~~~a~fn~P~GIavd~~~g 331 (762)
...+|++|..+||||.++.|||.| +|-|++++.++.+..+.|.- ++- .+ -.+.++.+..|+.|++.+ .|
T Consensus 528 ~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G 604 (1899)
T KOG4659|consen 528 VDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT-DG 604 (1899)
T ss_pred hheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC-Cc
Confidence 356899999999999999999999 79999999999999777772 221 01 134567888999999997 79
Q ss_pred eEEEEeCCC---CeEEEEeCCCCEEEEEeecC-CCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC
Q 004302 332 CLYIVDSEN---HAIRRADMGRRVLETVYPTS-GISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD 407 (762)
Q Consensus 332 ~LYVADt~N---hrIRkid~~~g~I~TiaG~G-~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG 407 (762)
.||||++.. ||||++.. +|.|..++|.- .+++.....++++....+. +.++.|+.|..+||.|+|
T Consensus 605 ~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~----------At~A~lnsp~alaVsPdg 673 (1899)
T KOG4659|consen 605 ALYVAESDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVA----------ATQAKLNSPYALAVSPDG 673 (1899)
T ss_pred eEEEEeccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchh----------hhccccCCcceEEECCCC
Confidence 999999976 68999974 66999999864 2333333335555443333 346779999999999999
Q ss_pred cEEEEECCCCEEEEEEC
Q 004302 408 NLLIINRSFETLWIMDL 424 (762)
Q Consensus 408 ~LYVAD~gN~rI~v~d~ 424 (762)
.+||||.+|-||+.+..
T Consensus 674 ~v~IAD~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 674 DVIIADSGNSRIRKVSA 690 (1899)
T ss_pred cEEEecCCchhhhhhhh
Confidence 99999999999998764
No 55
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.27 E-value=2.4e-10 Score=118.85 Aligned_cols=170 Identities=21% Similarity=0.273 Sum_probs=115.4
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC----
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN---- 340 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N---- 340 (762)
.|.|++++..++.+||++.+..+++ |. +|++...+-.-. ....++.|..+++++ +|+|||+|...
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~~~~~--d~~~g~~~~~~~~~~-------~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~ 110 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGGIAVV--DPDTGKVTVLADLPD-------GGVPFNRPNDVAVDP-DGNLYVTDSGGGGAS 110 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTCEEEE--ETTTTEEEEEEEEET-------TCSCTEEEEEEEE-T-TS-EEEEEECCBCTT
T ss_pred CCceEEEEccCCEEEEEEcCceEEE--ecCCCcEEEEeeccC-------CCcccCCCceEEEcC-CCCEEEEecCCCccc
Confidence 3999999955799999997655554 75 566665553200 123688999999997 78899999866
Q ss_pred ----CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC
Q 004302 341 ----HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS 415 (762)
Q Consensus 341 ----hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g 415 (762)
.+|.+++.. +.+..+.. .|..|-||+++++| .|||+|+.
T Consensus 111 ~~~~g~v~~~~~~-~~~~~~~~-----------------------------------~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 111 GIDPGSVYRIDPD-GKVTVVAD-----------------------------------GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp CGGSEEEEEEETT-SEEEEEEE-----------------------------------EESSEEEEEEETTSSEEEEEETT
T ss_pred cccccceEEECCC-CeEEEEec-----------------------------------CcccccceEECCcchheeecccc
Confidence 468889876 66655531 15579999999997 59999999
Q ss_pred CCEEEEEECCC--CcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEE
Q 004302 416 FETLWIMDLAS--GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILL 493 (762)
Q Consensus 416 N~rI~v~d~~~--g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYV 493 (762)
+++|++|+.+. +.+... +. ... . .... +. +-|.+++ .+|+|||
T Consensus 155 ~~~i~~~~~~~~~~~~~~~-----~~---~~~------------------~-~~~~----g~---pDG~~vD-~~G~l~v 199 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNR-----RV---FID------------------F-PGGP----GY---PDGLAVD-SDGNLWV 199 (246)
T ss_dssp TTEEEEEEEETTTCCEEEE-----EE---EEE--------------------SSSS----CE---EEEEEEB-TTS-EEE
T ss_pred cceeEEEeccccccceeee-----ee---EEE------------------c-CCCC----cC---CCcceEc-CCCCEEE
Confidence 99999999853 223211 00 000 0 0000 11 2345554 4789999
Q ss_pred EECCCCEEEEEECCCCcEEEEee
Q 004302 494 CDIVGQRIMRLNRESGVCSNFQF 516 (762)
Q Consensus 494 ADt~NhRIrkidl~~~~~sti~~ 516 (762)
|+..+++|.+++.++..+..+.+
T Consensus 200 a~~~~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 200 ADWGGGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp EEETTTEEEEEETTSCEEEEEE-
T ss_pred EEcCCCEEEEECCCccEEEEEcC
Confidence 99999999999999877776653
No 56
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.6e-09 Score=119.18 Aligned_cols=168 Identities=14% Similarity=0.270 Sum_probs=129.3
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--EN 340 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~N 340 (762)
+.+|.++++++.++++||.+...+.|.+||.+. ++...++.| ..|.+++++++++.+||+|. +|
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-------------~~P~~~~~~~~~~~vYV~n~~~~~ 139 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-------------LGPVGLAVDPDGKYVYVANAGNGN 139 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-------------cCCceEEECCCCCEEEEEecccCC
Confidence 389999999988889999999999999999533 444444433 26999999998899999999 57
Q ss_pred CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEE
Q 004302 341 HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI 419 (762)
++|.++|..++.+......| . .|.+++++++|. +||+|..+++|
T Consensus 140 ~~vsvid~~t~~~~~~~~vG------------------~-----------------~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 140 NTVSVIDAATNKVTATIPVG------------------N-----------------TPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred ceEEEEeCCCCeEEEEEecC------------------C-----------------CcceEEECCCCCeEEEEecCCCeE
Confidence 99999999877665543332 0 589999999987 99999999999
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC-
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG- 498 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N- 498 (762)
.++|.++..+.+ ++. +. .-.....+.+..+...+..+||++..+
T Consensus 185 ~vi~~~~~~v~~---~~~------~~--------------------------~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 185 SVIDTSGNSVVR---GSV------GS--------------------------LVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEeCCCcceec---ccc------cc--------------------------ccccCCCCceEEECCCCCEEEEEeccCC
Confidence 999987655432 111 00 001112234577777888999999999
Q ss_pred -CEEEEEECCCCcEEEE
Q 004302 499 -QRIMRLNRESGVCSNF 514 (762)
Q Consensus 499 -hRIrkidl~~~~~sti 514 (762)
.+|.++|..++.+...
T Consensus 230 ~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 230 SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CceEEEEeCCCceEEEe
Confidence 7999999999887754
No 57
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.18 E-value=4e-11 Score=109.05 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=61.0
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
++++||+|||+|||+||+|| +.++|.|++++++|+++.++.|+.+. ... ...+++++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C-------~~~~p~l~~la~~~~~~~~~~vd~~~-----~~~----~l~~~~~V------- 70 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFS-------ASFRPHFNALSSMFPQIRHLAIEESS-----IKP----SLLSRYGV------- 70 (100)
T ss_pred HhcCCCEEEEEEECCCCHHH-------HhHhHHHHHHHHHhccCceEEEECCC-----CCH----HHHHhcCC-------
Confidence 46899999999999999866 99999999999999998888886441 011 11222221
Q ss_pred CCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
-++|| ++++ +| .+.++.|..+.++|.+.
T Consensus 71 --------~~~PT~~lf~-~g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 71 --------VGFPTILLFN-ST-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred --------eecCEEEEEc-CC-ceeEecCCCCHHHHHhh
Confidence 13455 4554 56 67788999888877654
No 58
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.15 E-value=5e-11 Score=127.19 Aligned_cols=105 Identities=6% Similarity=-0.116 Sum_probs=81.2
Q ss_pred CCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 98 EDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 98 g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
++...+++++||++||+|||+||++| +.++|.|++++++|+ +.|++|+++. ... -.
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C-------~~~~P~L~~la~~yg-~~Vi~VsvD~------~~~----------~~ 211 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYC-------HQQAPILQAFEDRYG-IEVLPVSVDG------GPL----------PG 211 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccH-------HHHhHHHHHHHHHcC-cEEEEEeCCC------Ccc----------cc
Confidence 34578889999999999999999866 999999999999996 8999999886 111 12
Q ss_pred cceeeCCCCccccccCc---e-EEEEcCC-CCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 178 FPILLSNKNFPQMENGA---C-YLLSKDF-GNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 178 fPVl~D~~~~~~~~ygv---~-t~lId~~-G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
||.+.++. .+...+|| | +||++++ |++.....|..+.++|.+.|..+..
T Consensus 212 fp~~~~d~-~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 212 FPNARPDA-GQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCcccCCH-HHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 77774433 34556655 4 5899985 5555567899999999888887655
No 59
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=5.2e-09 Score=116.75 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=132.7
Q ss_pred CcceEEEccCCCEEEEEeC--CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 266 FPGCISADESGNRLFLSDS--NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs--~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.|.++++++.++.+||+|. ++++|.++|.. ++++..+-.| ..|.|+++++++..+||+|+.+++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-------------~~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-------------NTPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-------------CCcceEEECCCCCeEEEEecCCCe
Confidence 9999999999999999999 58999999995 5555543222 258999999988889999999999
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCC--CEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSF--ETL 419 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN--~rI 419 (762)
|-.+|..+..+.. +... . .-..+..|++++++++|. +||++.++ +++
T Consensus 184 v~vi~~~~~~v~~--~~~~-----------------~-----------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 184 VSVIDTSGNSVVR--GSVG-----------------S-----------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEEEeCCCcceec--cccc-----------------c-----------ccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 9999976665543 2210 0 012367899999999976 99999998 699
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
.++|..++.+...- .. .+.. .+.+.++++.+..+||++...+
T Consensus 234 ~~id~~~~~v~~~~--~~-----------------------------------~~~~-~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 234 LKIDTATGNVTATD--LP-----------------------------------VGSG-APRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred EEEeCCCceEEEec--cc-----------------------------------cccC-CCCceeECCCCCEEEEEecCCC
Confidence 99999887654220 00 0011 1234677788899999999999
Q ss_pred EEEEEECCCCcEEEEeeccccccCCCc
Q 004302 500 RIMRLNRESGVCSNFQFSNFAILGLPY 526 (762)
Q Consensus 500 RIrkidl~~~~~sti~~s~~G~lG~p~ 526 (762)
.+..+|..+..+......+....+.|+
T Consensus 276 ~V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 276 TVSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred eEEEEeCCCCceeeeecccccccccce
Confidence 999999999777654333333334443
No 60
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-10 Score=111.81 Aligned_cols=86 Identities=3% Similarity=-0.100 Sum_probs=73.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.++||+|+|||+||+|| +.-.|.|+++.++|.+ +++.-|++|+ .
T Consensus 60 S~~PVlVdF~A~WCgPC-------k~l~P~l~~~~~~~~g~~k~~kvdtD~------~---------------------- 104 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPC-------KMLGPILEELVSEYAGKFKLYKVDTDE------H---------------------- 104 (150)
T ss_pred cCCCEEEEEecCcCccH-------hHhhHHHHHHHHhhcCeEEEEEEcccc------c----------------------
Confidence 47899999999999977 9999999999999998 9999998876 1
Q ss_pred CccccccC---ceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 186 NFPQMENG---ACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 186 ~~~~~~yg---v~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
..++..|+ +|++|+=++|+.+.+..|..+.+.|++.|++++.
T Consensus 105 ~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 105 PELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred cchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 12344554 4577777899999999999999999999998875
No 61
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.09 E-value=2.6e-10 Score=103.70 Aligned_cols=85 Identities=14% Similarity=0.026 Sum_probs=65.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
.|++|+|+|||+||+|| +..+|.|.+++++|++ ++|+-++.+. .+ .++++++
T Consensus 16 ~~~~vvv~F~a~wC~~C-------k~~~p~l~~~~~~~~~~~~~~~~vd~d~-------~~----~~~~~~v-------- 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPC-------KAVVSLFKKIKNELGDDLLHFATAEADT-------ID----TLKRYRG-------- 69 (102)
T ss_pred cCCeEEEEEECCcCHhH-------HHHhHHHHHHHHHcCCCcEEEEEEeCCC-------HH----HHHHcCC--------
Confidence 58999999999999876 9999999999999985 7777776553 11 2223321
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++-++|+.+.+..|. +.+.+.++|++|
T Consensus 70 -------~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 70 -------KCEPTFLFYKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred -------CcCcEEEEEECCEEEEEEecC-ChHHHHHHHhhC
Confidence 235677777899999999995 778888888753
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.05 E-value=2.5e-10 Score=106.98 Aligned_cols=102 Identities=9% Similarity=-0.100 Sum_probs=72.6
Q ss_pred CCC-CEEEEEEeccCCCCccCCCCcchhhcHHHH---HHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcce
Q 004302 106 RGG-AFLVLAGRFVDNCDSLIAGCGTVVTFEKVK---SIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPI 180 (762)
Q Consensus 106 ~rG-K~VvLnFWAtWC~pC~~p~C~~~~emP~L~---~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPV 180 (762)
-.| |+|||+|||+||++| ++++|.+. .+++.+.+ +.++.|+.+. +. .+..| +-
T Consensus 11 ~~~~k~vlv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~------~~-~~~~~--------~~ 68 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYC-------DKLKRDYLNDPAVQAYIRAHFVVVYINIDG------DK-EVTDF--------DG 68 (125)
T ss_pred HcCCCcEEEEEeCCCCHHH-------HHHHHHhcCcHHHHHHHHhheEEEEEEccC------Cc-eeecc--------CC
Confidence 368 999999999999866 99988774 56666655 8899998775 11 11111 11
Q ss_pred eeCCCCccccccC---ce-EEEEcCC-CCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 181 LLSNKNFPQMENG---AC-YLLSKDF-GNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 181 l~D~~~~~~~~yg---v~-t~lId~~-G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.......+..+|+ +| +++++++ |+++.+..|..+.+.+.+.|+.++.+.
T Consensus 69 ~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 69 EALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred CCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 1112223344454 55 4899999 899999999999999999999888763
No 63
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.05 E-value=4.7e-10 Score=101.70 Aligned_cols=89 Identities=10% Similarity=-0.025 Sum_probs=69.0
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
-+||+|||.|||+||++| +..+|.+ .++++.+.+ ++++.|+.+. +.....++++++++
T Consensus 9 ~~~k~vlv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~~~~~~~~~~~~i----- 70 (104)
T cd02953 9 AQGKPVFVDFTADWCVTC-------KVNEKVVFSDPEVQAALKKDVVLLRADWTK------NDPEITALLKRFGV----- 70 (104)
T ss_pred HcCCeEEEEEEcchhHHH-------HHHHHHhcCCHHHHHHHhCCeEEEEEecCC------CCHHHHHHHHHcCC-----
Confidence 358999999999999866 8888887 678888884 9999998764 22334566666553
Q ss_pred eCCCCccccccCceE-EEEcC-CCCEEEEecCCcCHHHHHHHH
Q 004302 182 LSNKNFPQMENGACY-LLSKD-FGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t-~lId~-~G~iv~~~~G~~~~~~L~~~l 222 (762)
.++|+ +++++ +|+++.++.|..+.++|.+.|
T Consensus 71 ----------~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 71 ----------FGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ----------CCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 24564 77787 899999999999998888776
No 64
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.05 E-value=6e-10 Score=109.28 Aligned_cols=111 Identities=9% Similarity=-0.003 Sum_probs=89.6
Q ss_pred CCCceeecccC---CCccccCC-CCCC-EEEEEEeccCCCCccCCCCcchhh-cHHHHHHHHHCCC--e-EEEEEEcCCC
Q 004302 87 QGPHHLWFNIV---EDNIHFFK-RGGA-FLVLAGRFVDNCDSLIAGCGTVVT-FEKVKSIQQSFPQ--L-QVIGFLHGCS 157 (762)
Q Consensus 87 ~g~~~~w~n~~---g~~v~Lsd-~rGK-~VvLnFWAtWC~pC~~p~C~~~~e-mP~L~~L~~~y~~--v-~VvgV~~~~~ 157 (762)
..|+|++.+.+ |+.++|++ ++|| +||+-|++.||+.| ..| ++.|.+.+++|.. + +|++|+.+.
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~C-------t~e~~~~~~~~~~~f~~~g~~~V~~iS~D~- 75 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTC-------SAQHLPGYVENADELKAKGVDEVICVSVND- 75 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCC-------chhHHHHHHHhHHHHHHCCCCEEEEEECCC-
Confidence 35677777775 88999999 5886 66667788999755 999 9999999999964 7 699999874
Q ss_pred ccCcCCHHHHHHHHHhcCC--CcceeeCCCCccccccCc--------------e-EEEEcCCCCEEEEecCC
Q 004302 158 TISAVDQTRLVEMLMKEYI--TFPILLSNKNFPQMENGA--------------C-YLLSKDFGNARVFHENS 212 (762)
Q Consensus 158 ~~~e~~~~~v~~f~~k~~i--tfPVl~D~~~~~~~~ygv--------------~-t~lId~~G~iv~~~~G~ 212 (762)
....++|.+++++ +||+|-|.+..+.++||+ + +|+|| +|+|++.....
T Consensus 76 ------~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~ 140 (155)
T cd03013 76 ------PFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEE 140 (155)
T ss_pred ------HHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEec
Confidence 7789999999998 899999998777777664 1 48999 69999865443
No 65
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.04 E-value=1e-09 Score=97.63 Aligned_cols=85 Identities=6% Similarity=-0.051 Sum_probs=66.6
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+-+|++|||+|||+||++| ++..|.++++++.|++ +.++.|+.+. .. ++.+++++
T Consensus 9 ~~~~~~vlv~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~l~~~~~i------- 64 (96)
T cd02956 9 ESTQVPVVVDFWAPRSPPS-------KELLPLLERLAEEYQGQFVLAKVNCDA------QP----QIAQQFGV------- 64 (96)
T ss_pred hcCCCeEEEEEECCCChHH-------HHHHHHHHHHHHHhCCcEEEEEEeccC------CH----HHHHHcCC-------
Confidence 3468999999999999866 9999999999999987 8889988765 22 23334443
Q ss_pred CCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
.++|+ +++ ++|+++....|..+.++|...|
T Consensus 65 --------~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 65 --------QALPTVYLF-AAGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --------CCCCEEEEE-eCCEEeeeecCCCCHHHHHHHh
Confidence 24665 455 4999999999999988888765
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=5.5e-08 Score=106.92 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=122.0
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCC---cEEE--EecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNG---KILD--CIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G---~i~~--~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.-.+|+.+.++|+++.+||+|.+.++|++++.+. ++.. .+....| ..|..|++++++..+||+.
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-----------SGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-----------SSEEEEEE-TTSSEEEEEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-----------CCCcEEEEcCCcCEEEEec
Confidence 4578999999998899999999999999998742 3433 1111111 3499999999889999999
Q ss_pred CCCCeEEEEeCC--CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEEC
Q 004302 338 SENHAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINR 414 (762)
Q Consensus 338 t~NhrIRkid~~--~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~ 414 (762)
...+.|.+|+.. ++.++.+..... .+ .+. ..-+.|.+|++++|| .|||+++
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~---~~----------~~~-------------~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTIST---LP----------EGF-------------TGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEES---CE----------TTS-------------CSSSSEEEEEE-TTSSEEEEEEC
T ss_pred CCCCcEEEEeecccCCceeEEEEeee---cc----------ccc-------------cccCCceeEEEecCCCEEEEEec
Confidence 999999999876 665544422210 00 000 112479999999986 5999999
Q ss_pred CCCEEEEEEC--CCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEE
Q 004302 415 SFETLWIMDL--ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHIL 492 (762)
Q Consensus 415 gN~rI~v~d~--~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LY 492 (762)
+.+.|.+|+. ++|.++.+- .....| . .|+..++++++..||
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~-----~~~~~G-----------------------------~---~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQ-----TVPTGG-----------------------------K---FPRHFAFSPDGRYLY 307 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEE-----EEEESS-----------------------------S---SEEEEEE-TTSSEEE
T ss_pred cCCEEEEEEEecCCCceEEEE-----EEeCCC-----------------------------C---CccEEEEeCCCCEEE
Confidence 9999998887 456665431 000001 1 135577778888999
Q ss_pred EEECCCCEEEEEEC--CCCcEEEE
Q 004302 493 LCDIVGQRIMRLNR--ESGVCSNF 514 (762)
Q Consensus 493 VADt~NhRIrkidl--~~~~~sti 514 (762)
|++...+.|..|+. ++|.++.+
T Consensus 308 Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEecCCCeEEEEEEeCCCCcEEEe
Confidence 99999999987754 68877654
No 67
>PRK10996 thioredoxin 2; Provisional
Probab=99.01 E-value=1.3e-09 Score=105.05 Aligned_cols=87 Identities=6% Similarity=-0.062 Sum_probs=70.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+||+|+|+|||+||++| ++.+|.|+++++++.+ +.++.|+.+. .. ++.+++++
T Consensus 51 ~~k~vvv~F~a~wC~~C-------~~~~~~l~~l~~~~~~~v~~~~vd~~~------~~----~l~~~~~V--------- 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPC-------RNFAPIFEDVAAERSGKVRFVKVNTEA------ER----ELSARFRI--------- 104 (139)
T ss_pred CCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHhCCCeEEEEEeCCC------CH----HHHHhcCC---------
Confidence 48999999999999876 9999999999999886 8998987764 22 23444443
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++-++|+++....|..+.+.+++.|+++
T Consensus 105 ------~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 105 ------RSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred ------CccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 3567766667999999999999999999988865
No 68
>PRK09381 trxA thioredoxin; Provisional
Probab=99.00 E-value=1.4e-09 Score=99.38 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=69.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++++|+||++||++| +..+|.|+++.++|++ +.+..|+.+. ... ..+++++
T Consensus 20 ~~~~vvv~f~~~~C~~C-------~~~~p~~~~l~~~~~~~~~~~~vd~~~------~~~----~~~~~~v--------- 73 (109)
T PRK09381 20 ADGAILVDFWAEWCGPC-------KMIAPILDEIADEYQGKLTVAKLNIDQ------NPG----TAPKYGI--------- 73 (109)
T ss_pred CCCeEEEEEECCCCHHH-------HHHhHHHHHHHHHhCCCcEEEEEECCC------Chh----HHHhCCC---------
Confidence 47899999999999866 9999999999999987 8999998875 221 1222222
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
.++|++++-++|+++....|..+.++|++.|++.+
T Consensus 74 ------~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 74 ------RGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred ------CcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 24666555579999999999999888888888754
No 69
>PHA02278 thioredoxin-like protein
Probab=98.98 E-value=1.6e-09 Score=99.45 Aligned_cols=86 Identities=8% Similarity=-0.081 Sum_probs=64.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
++++|||+|||+||+|| +...|.|+++++++.. +.|+-|+++. +.....+..+++++
T Consensus 13 ~~~~vvV~F~A~WCgpC-------k~m~p~l~~l~~~~~~~~~~~~vdvd~------~~~d~~~l~~~~~I--------- 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKC-------EILKSVIPMFQESGDIKKPILTLNLDA------EDVDREKAVKLFDI--------- 70 (103)
T ss_pred CCCcEEEEEECCCCHHH-------HhHHHHHHHHHhhhcCCceEEEEECCc------cccccHHHHHHCCC---------
Confidence 68999999999999977 9999999999988654 7788888875 11001112222221
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
-++||+++=++|+.+.++.|..+.+.|.+
T Consensus 71 ------~~iPT~i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 71 ------MSTPVLIGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred ------ccccEEEEEECCEEEEEEeCCCCHHHHHh
Confidence 25678888889999999999988777664
No 70
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.97 E-value=1.3e-07 Score=103.87 Aligned_cols=240 Identities=18% Similarity=0.201 Sum_probs=147.3
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcC--CCcEEEEecC--CCCCCCCcc-cccccCCcceEEEecCCCeEEEEe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDG--NGKILDCIGS--CPGFEDGEF-ESSKLMRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~--~G~i~~~iGs--G~G~~DG~~-~~a~fn~P~GIavd~~~g~LYVAD 337 (762)
.-..|..|++++.+..||||..+.+.|.+++. +|.+...... ..|. |+. ....-.+|+.+.++|+++.|||+|
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCEEEEEe
Confidence 34689999999999999999999999988765 5766554221 0110 110 112346799999999889999999
Q ss_pred CCCCeEEEEeCCCCE--EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEEC
Q 004302 338 SENHAIRRADMGRRV--LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINR 414 (762)
Q Consensus 338 t~NhrIRkid~~~g~--I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~ 414 (762)
-++++|++++.+... +....... -. . =..|++++++++| .+||++.
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~--~~------------~-----------------G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIK--VP------------P-----------------GSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEE--CS------------T-----------------TSSEEEEEE-TTSSEEEEEET
T ss_pred cCCCEEEEEEEeCCCceEEEeeccc--cc------------c-----------------CCCCcEEEEcCCcCEEEEecC
Confidence 999999999886543 33321100 00 0 1259999999984 6999999
Q ss_pred CCCEEEEEECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEE
Q 004302 415 SFETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHIL 492 (762)
Q Consensus 415 gN~rI~v~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LY 492 (762)
.++.|.+|+.+ +|.+..+- .... .|.+ ..+. ..+-.+.+.+++..||
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~--------~~~~-----------~~~~-----------~~~~-~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQ--------TIST-----------LPEG-----------FTGE-NAPAEIAISPDGRFLY 260 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEE--------EEES-----------CETT-----------SCSS-SSEEEEEE-TTSSEEE
T ss_pred CCCcEEEEeecccCCceeEEE--------Eeee-----------cccc-----------cccc-CCceeEEEecCCCEEE
Confidence 99999998876 55443221 0000 0000 0011 1123355667788999
Q ss_pred EEECCCCEEEEEEC--CCCcEEEEeeccccccCCCceeec-cccceeecccccCCCccccceeeecCCCceeEEE-EEec
Q 004302 493 LCDIVGQRIMRLNR--ESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKV-NVDI 568 (762)
Q Consensus 493 VADt~NhRIrkidl--~~~~~sti~~s~~G~lG~p~~~~~-pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~~v-~v~~ 568 (762)
|++.+.+.|-.|++ .++.++.++.-..+. ..|..+.. |.++..-+++-.++. -.+-+++...|.+.... .+.+
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G-~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~d~~tG~l~~~~~~~~~ 337 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGG-KFPRHFAFSPDGRYLYVANQDSNT--VSVFDIDPDTGKLTPVGSSVPI 337 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEESS-SSEEEEEE-TTSSEEEEEETTTTE--EEEEEEETTTTEEEEEEEEEES
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeCCC-CCccEEEEeCCCCEEEEEecCCCe--EEEEEEeCCCCcEEEecccccC
Confidence 99999999999998 456777654322211 13666665 666654444432322 12224566778876544 3555
Q ss_pred C
Q 004302 569 P 569 (762)
Q Consensus 569 p 569 (762)
|
T Consensus 338 ~ 338 (345)
T PF10282_consen 338 P 338 (345)
T ss_dssp S
T ss_pred C
Confidence 4
No 71
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.96 E-value=1.2e-09 Score=101.00 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=67.8
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+.+||++||+|||+||++| +..+|.+.++.++|++ +.|..|+.+. .. ...+++++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C-------~~~~p~~~~l~~~~~~~~v~~~~vd~d~------~~----~l~~~~~V------ 77 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSC-------IHIEPVWKEVIQELEPLGVGIATVNAGH------ER----RLARKLGA------ 77 (111)
T ss_pred ccCCCeEEEEEECCccHhH-------HHhhHHHHHHHHHHHhcCceEEEEeccc------cH----HHHHHcCC------
Confidence 4579999999999999866 9999999999999974 8888887664 21 22333433
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++=++|+++.+..|..+.+.|.+.|++|
T Consensus 78 ---------~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 78 ---------HSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ---------ccCCEEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 2456543336999999999999999998888753
No 72
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.93 E-value=1.2e-09 Score=102.13 Aligned_cols=80 Identities=4% Similarity=-0.213 Sum_probs=62.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++|||+|||+||+|| +...|.|++|.++|++ +.|+-|+.++ .. +..+++++
T Consensus 13 ~~~~vVV~F~A~WCgpC-------k~m~P~le~la~~~~~~v~f~kVDvD~------~~----~la~~~~V--------- 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVC-------MQMDEVLAKIAEDVSNFAVIYLVDIDE------VP----DFNKMYEL--------- 66 (114)
T ss_pred CCCEEEEEEECCCChhH-------HHHHHHHHHHHHHccCceEEEEEECCC------CH----HHHHHcCC---------
Confidence 57899999999999976 9999999999999998 7899998876 22 22223321
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGML 218 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L 218 (762)
.++||+++=++|+.+.+..|..+...+
T Consensus 67 ------~~iPTf~~fk~G~~v~~~~G~~~~~~~ 93 (114)
T cd02954 67 ------YDPPTVMFFFRNKHMKIDLGTGNNNKI 93 (114)
T ss_pred ------CCCCEEEEEECCEEEEEEcCCCCCceE
Confidence 246788888899999999887765443
No 73
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-08 Score=99.14 Aligned_cols=129 Identities=13% Similarity=0.170 Sum_probs=99.9
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-Cc-CCHHH
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-SA-VDQTR 166 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~e-~~~~~ 166 (762)
+...+.+|++++|++||||+|||-==||-|+- -.....|+.||++|++ +.|+|+-+.. |. .| .+.++
T Consensus 8 ~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGf--------TpQYegLe~Ly~ky~~~Gf~VLgFPcNQ-F~~QEPg~~eE 78 (162)
T COG0386 8 FSVKDIDGEPVSLSDYKGKVLLIVNTASKCGF--------TPQYEGLEALYKKYKDKGFEVLGFPCNQ-FGGQEPGSDEE 78 (162)
T ss_pred ceeeccCCCCccHHHhCCcEEEEEEcccccCC--------cHhHHHHHHHHHHHhhCCcEEEeccccc-cccCCCCCHHH
Confidence 34456677799999999999999999999974 2567889999999987 9999998775 54 22 46788
Q ss_pred HHHHHH-hcCCCcceeeCCC--Cc--------cccc-----cC--ceE----EEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 167 LVEMLM-KEYITFPILLSNK--NF--------PQME-----NG--ACY----LLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 167 v~~f~~-k~~itfPVl~D~~--~~--------~~~~-----yg--v~t----~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
+.+|.+ +++++||++---+ +. +..+ ++ +.| ||||++|+++.+..-...+++++..|++
T Consensus 79 I~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~ 158 (162)
T COG0386 79 IAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEK 158 (162)
T ss_pred HHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHH
Confidence 999977 6899999875221 10 1111 11 222 9999999999999999999999999999
Q ss_pred HHHh
Q 004302 225 LIMQ 228 (762)
Q Consensus 225 ll~~ 228 (762)
++.+
T Consensus 159 lL~~ 162 (162)
T COG0386 159 LLAE 162 (162)
T ss_pred HhcC
Confidence 8853
No 74
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.88 E-value=1.2e-08 Score=98.99 Aligned_cols=91 Identities=8% Similarity=-0.070 Sum_probs=71.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
..++|||+|||+||+|| +...|.|+++.++|++ +.|+-|++|+ ..++.++++|.
T Consensus 22 ~~~lVVvdF~A~WCgpC-------k~m~p~l~~la~~~~~~~~~~kVDVDe----------~~dla~~y~I~-------- 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETC-------MQMDEVLASVAETIKNFAVIYLVDITE----------VPDFNTMYELY-------- 76 (142)
T ss_pred CCCEEEEEEECCCChhH-------HHHHHHHHHHHHHcCCceEEEEEECCC----------CHHHHHHcCcc--------
Confidence 57899999999999977 9999999999999999 8888888875 23555555543
Q ss_pred CccccccCce-EEEEcCCCC-EEEEecC--------CcCHHHHHHHHHHHHHhh
Q 004302 186 NFPQMENGAC-YLLSKDFGN-ARVFHEN--------SLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 186 ~~~~~~ygv~-t~lId~~G~-iv~~~~G--------~~~~~~L~~~l~~ll~~~ 229 (762)
++| +++|=++|+ .+.+..| ..+.++|...++.+++.+
T Consensus 77 -------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 77 -------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred -------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 123 453556777 7788888 678889999999988875
No 75
>PTZ00051 thioredoxin; Provisional
Probab=98.86 E-value=1.2e-08 Score=91.02 Aligned_cols=80 Identities=9% Similarity=-0.078 Sum_probs=63.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
.+++++|+||++||++| +...|.+.+++++++++.++.|+.+. ...+.+++++
T Consensus 17 ~~~~vli~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~vd~~~----------~~~~~~~~~v---------- 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPC-------KRIAPFYEECSKEYTKMVFVKVDVDE----------LSEVAEKENI---------- 69 (98)
T ss_pred cCCeEEEEEECCCCHHH-------HHHhHHHHHHHHHcCCcEEEEEECcc----------hHHHHHHCCC----------
Confidence 47899999999999866 99999999999999998888887654 1234455544
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLN 219 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~ 219 (762)
.++|++++-++|+++.+..|. ..++|+
T Consensus 70 -----~~~Pt~~~~~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 70 -----TSMPTFKVFKNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred -----ceeeEEEEEeCCeEEEEEeCC-CHHHhh
Confidence 256787777999999999996 445554
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.81 E-value=1.4e-08 Score=91.37 Aligned_cols=84 Identities=7% Similarity=-0.124 Sum_probs=61.6
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+|+ +||+|||+||+|| ++.+|.++++++++++ +.+..|+.+. ... ..+++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C-------~~~~p~~~~l~~~~~~~~v~~~~vd~~~------~~~----~~~~~~i------- 69 (101)
T cd02994 15 LEGE-WMIEFYAPWCPAC-------QQLQPEWEEFADWSDDLGINVAKVDVTQ------EPG----LSGRFFV------- 69 (101)
T ss_pred hCCC-EEEEEECCCCHHH-------HHHhHHHHHHHHhhccCCeEEEEEEccC------CHh----HHHHcCC-------
Confidence 3576 5799999999866 9999999999998874 7888887664 221 2233332
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++|++++-++|++ ....|..+.++|.+.|+
T Consensus 70 --------~~~Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 70 --------TALPTIYHAKDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred --------cccCEEEEeCCCCE-EEecCCCCHHHHHHHHh
Confidence 24566666688985 67889999888887765
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.80 E-value=6.2e-07 Score=97.14 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=111.9
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
.|.+|++++.+..||++....++|.+|+.+ |.+...+.... ....|++++++|+++.|||++.+.++|
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----------GLEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----------CCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 689999999888999999989999998763 54332222111 124599999999888999999999999
Q ss_pred EEEeCCC-CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEEEE
Q 004302 344 RRADMGR-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLWI 421 (762)
Q Consensus 344 Rkid~~~-g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI~v 421 (762)
.++|.+. +.+....... . .. ..=..|++++++++| .+||++...+.|.+
T Consensus 151 ~v~d~~~~g~l~~~~~~~------------------~--~~---------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAE------------------V--TT---------VEGAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred EEEEECCCCcccccCCCc------------------e--ec---------CCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 9999754 3321110000 0 00 001259999999985 58999999999999
Q ss_pred EECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 422 MDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 422 ~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
|+.+ ++.+..+. ..+ .+|.+ ..+ +..+....+++.+..|||++...+
T Consensus 202 ~~~~~~~~~~~~~~--------~~~-----------~~p~~-----------~~~-~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 202 WQLKDPHGEIECVQ--------TLD-----------MMPAD-----------FSD-TRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred EEEeCCCCCEEEEE--------EEe-----------cCCCc-----------CCC-CccceeEEECCCCCEEEEecCCCC
Confidence 9876 34432210 000 01100 000 101122445577779999999999
Q ss_pred EEEEEECC
Q 004302 500 RIMRLNRE 507 (762)
Q Consensus 500 RIrkidl~ 507 (762)
.|..|+.+
T Consensus 251 ~I~v~~i~ 258 (330)
T PRK11028 251 LISVFSVS 258 (330)
T ss_pred eEEEEEEe
Confidence 99998874
No 78
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.79 E-value=9e-09 Score=92.81 Aligned_cols=83 Identities=8% Similarity=-0.077 Sum_probs=63.6
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
.++++++|.|||+||++| ++..|.++++.++|++ +.|..|+.+. .. ...+++++.
T Consensus 16 ~~~~~~~v~f~a~wC~~C-------~~~~p~~~~~a~~~~~~~~~~~vd~~~------~~----~~~~~~~v~------- 71 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHC-------HDLAPTWREFAKEMDGVIRIGAVNCGD------DR----MLCRSQGVN------- 71 (101)
T ss_pred cCCCeEEEEEECCCChHH-------HHhHHHHHHHHHHhcCceEEEEEeCCc------cH----HHHHHcCCC-------
Confidence 357999999999999866 9999999999999987 8899998875 22 233444432
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
++|++++=++|+.+....|..+.+.|.+
T Consensus 72 --------~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 72 --------SYPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred --------ccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 3456555578888888889888877654
No 79
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.5e-08 Score=92.17 Aligned_cols=85 Identities=11% Similarity=0.016 Sum_probs=66.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
.+|++||+|.|+||+|| +..-|.+.+|.++|+++.|+-|++++ ...+.++.++
T Consensus 20 ~~kliVvdF~a~wCgPC-------k~i~P~~~~La~~y~~v~Flkvdvde----------~~~~~~~~~V---------- 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPC-------KAIAPKFEKLAEKYPDVVFLKVDVDE----------LEEVAKEFNV---------- 72 (106)
T ss_pred CCCeEEEEEECCCCcch-------hhhhhHHHHHHHHCCCCEEEEEeccc----------CHhHHHhcCc----------
Confidence 47999999999999977 99999999999999999999998762 3344444332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
..+|||++=++|+.+....|.... +|++.|..
T Consensus 73 -----~~~PTf~f~k~g~~~~~~vGa~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 73 -----KAMPTFVFYKGGEEVDEVVGANKA-ELEKKIAK 104 (106)
T ss_pred -----eEeeEEEEEECCEEEEEEecCCHH-HHHHHHHh
Confidence 135688888999999999997664 66666553
No 80
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.74 E-value=9.6e-07 Score=95.67 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=114.0
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCC--CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGN--GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~--G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
...|++++++|.++.+||++.+.++|.++|.+ |.+........-.. .-..|.++++++++..|||++...+
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-------~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-------EGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-------CCCCCceEEECCCCCEEEEEecCCC
Confidence 35689999999888999999999999999874 43321110000000 0134999999998899999999999
Q ss_pred eEEEEeCC--CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCE
Q 004302 342 AIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFET 418 (762)
Q Consensus 342 rIRkid~~--~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~r 418 (762)
.|.+++.+ ++.++.+.-.+. ... +. ..-.+|.+|+++++| .|||++.+.+.
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~--~p~-----------~~-------------~~~~~~~~i~~~pdg~~lyv~~~~~~~ 251 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDM--MPA-----------DF-------------SDTRWAADIHITPDGRHLYACDRTASL 251 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEec--CCC-----------cC-------------CCCccceeEEECCCCCEEEEecCCCCe
Confidence 99999876 344333211110 000 00 001367789999986 59999999999
Q ss_pred EEEEECCC--CcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEEC
Q 004302 419 LWIMDLAS--GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDI 496 (762)
Q Consensus 419 I~v~d~~~--g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt 496 (762)
|.+|+.+. +.. ++. +.. ..+ ..| ....+.+++.+|||+..
T Consensus 252 I~v~~i~~~~~~~-~~~----------~~~---------------------~~~---~~p---~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 252 ISVFSVSEDGSVL-SFE----------GHQ---------------------PTE---TQP---RGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEEEEeCCCCeE-EEe----------EEE---------------------ecc---ccC---CceEECCCCCEEEEEEc
Confidence 98888643 221 110 100 000 112 23566677889999999
Q ss_pred CCCEEEEEEC--CCCcEEE
Q 004302 497 VGQRIMRLNR--ESGVCSN 513 (762)
Q Consensus 497 ~NhRIrkidl--~~~~~st 513 (762)
.++.|..|+. +++....
T Consensus 294 ~~~~v~v~~~~~~~g~l~~ 312 (330)
T PRK11028 294 KSHHISVYEIDGETGLLTE 312 (330)
T ss_pred cCCcEEEEEEcCCCCcEEE
Confidence 8898888765 4555443
No 81
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.74 E-value=3e-08 Score=88.89 Aligned_cols=85 Identities=4% Similarity=-0.221 Sum_probs=62.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--C-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--Q-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
++++++|+|||+||++| ++..|.++++.++++ + +.++.|+.+. + .-..+.+++++
T Consensus 16 ~~~~~~v~f~a~wC~~C-------~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~--~~~~~~~~~~i------- 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHC-------KKMKPEFTKAATELKEDGKGVLAAVDCTK------P--EHDALKEEYNV------- 73 (104)
T ss_pred hCCCEEEEEECCCCHHH-------HHhCHHHHHHHHHHhhCCceEEEEEECCC------C--ccHHHHHhCCC-------
Confidence 57799999999999866 999999999999987 3 7777776653 1 11223333333
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
.++|++++.++|+++....|..+.+.+.+.
T Consensus 74 --------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 74 --------KGFPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred --------ccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 235677777889998889999988877654
No 82
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.73 E-value=3.4e-08 Score=89.68 Aligned_cols=86 Identities=8% Similarity=-0.174 Sum_probs=61.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.|+++||+|||+||++| ++..|.+.++++++++ +.|+.|+.+. + ...++.+++++.
T Consensus 17 ~~~~~lv~f~a~wC~~C-------~~~~~~~~~~a~~~~~~~~~~~v~~~~------~--~~~~~~~~~~i~-------- 73 (109)
T cd03002 17 TNYTTLVEFYAPWCGHC-------KNLKPEYAKAAKELDGLVQVAAVDCDE------D--KNKPLCGKYGVQ-------- 73 (109)
T ss_pred CCCeEEEEEECCCCHHH-------HhhChHHHHHHHHhcCCceEEEEecCc------c--ccHHHHHHcCCC--------
Confidence 58999999999999866 9999999999999987 8899998764 1 122334444432
Q ss_pred CccccccCceE-EEEcCCC----CEEEEecCCcCHHHHHHHH
Q 004302 186 NFPQMENGACY-LLSKDFG----NARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G----~iv~~~~G~~~~~~L~~~l 222 (762)
++|+ +++++.+ .......|..+.+.|.+.|
T Consensus 74 -------~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 74 -------GFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred -------cCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 3454 5555554 2445677888888777665
No 83
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.73 E-value=5.3e-08 Score=87.47 Aligned_cols=83 Identities=7% Similarity=-0.087 Sum_probs=64.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+|+|+|.||++||++| +..+|.|+++.+++++ +.++-|+.+. .. ++.+++++
T Consensus 12 ~~~~vlv~f~a~~C~~C-------~~~~~~l~~l~~~~~~~v~~~~id~d~------~~----~l~~~~~v--------- 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPC-------RTLKPILNKVIDEFDGAVHFVEIDIDE------DQ----EIAEAAGI--------- 65 (97)
T ss_pred CCCeEEEEEECCCChhH-------HHHHHHHHHHHHHhCCceEEEEEECCC------CH----HHHHHCCC---------
Confidence 68999999999999866 9999999999999986 8888888764 22 23333332
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
.++|+ +++ ++|+++....|..+.+++.+.|
T Consensus 66 ------~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 66 ------MGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred ------eeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 25665 455 5899999999999988877665
No 84
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.73 E-value=7.9e-08 Score=90.89 Aligned_cols=97 Identities=6% Similarity=-0.142 Sum_probs=74.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCcc-CcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTI-SAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~-~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.|+.++|+|+++||||| +...|.|+++.++. ++.|.-|+++.+.. ...+.+++.+|.+++++.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C-------~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i----- 88 (122)
T TIGR01295 22 KKETATFFIGRKTCPYC-------RKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF----- 88 (122)
T ss_pred cCCcEEEEEECCCChhH-------HHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC-----
Confidence 48899999999999866 99999999999983 36677777764111 112344788898988765433
Q ss_pred CccccccCceEEEEcCCCCEEEEecC-CcCHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHEN-SLDIGMLNKAV 222 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G-~~~~~~L~~~l 222 (762)
.++|++++=++|+.+.++.| ..+.++|++.+
T Consensus 89 ------~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 89 ------MGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred ------CCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 46899999999999999988 45577777654
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.72 E-value=2.6e-08 Score=90.10 Aligned_cols=83 Identities=4% Similarity=-0.197 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++++|+|||+||++| ++.+|.++++.++|++ +.+..|+.+. . .+..+++++.
T Consensus 18 ~~~~v~v~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~~vd~~~------~----~~~~~~~~i~-------- 72 (104)
T cd03004 18 RKEPWLVDFYAPWCGPC-------QALLPELRKAARALKGKVKVGSVDCQK------Y----ESLCQQANIR-------- 72 (104)
T ss_pred CCCeEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCcEEEEEECCc------h----HHHHHHcCCC--------
Confidence 57799999999999866 9999999999999987 8888888764 1 1233444432
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcC-HHHHHHH
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLD-IGMLNKA 221 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~-~~~L~~~ 221 (762)
++|+ +++++.|+.+....|..+ .++|.+.
T Consensus 73 -------~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 73 -------AYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred -------cccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 3454 555555588888999876 7777654
No 86
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.9e-08 Score=96.06 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=100.8
Q ss_pred CccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHh---
Q 004302 99 DNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMK--- 173 (762)
Q Consensus 99 ~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k--- 173 (762)
.+++|+++.|||+||-||--.= ||-| --|+..+.++|++|.. ++||||++|. .....++.+.
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DF----TfVC--pTEi~af~~~y~eF~~~g~eVigvS~Ds-------~fsH~aW~~~~~~ 90 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADF----TFVC--PTEIIAFAKRYEEFQKRGVEVIGVSTDS-------VFSHKAWKATIRE 90 (194)
T ss_pred eEEechhhcCcEEEEEeccCCC----CccC--cchHHHHHhhhHHHHHcCCEEEEEecCc-------HHHHHHHHhcHHh
Confidence 3899999999999999986665 4578 8999999999999975 9999999985 4455555443
Q ss_pred -cC---CCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCc----CHHHHHHHHHHHHHhhccCCCC
Q 004302 174 -EY---ITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSL----DIGMLNKAVEELIMQQQENSSS 235 (762)
Q Consensus 174 -~~---itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~----~~~~L~~~l~~ll~~~~~~s~~ 235 (762)
.+ ++||++-|.+..+.++||+- +|+||++|.+++...-.. +.+++.+.|+.|+--...
T Consensus 91 ~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq~~~~h---- 166 (194)
T COG0450 91 AGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKH---- 166 (194)
T ss_pred cCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHHHHHHh----
Confidence 45 78999999999999988753 599999999998654333 256666677766653211
Q ss_pred CCCccchhhhhhhhcc
Q 004302 236 PSGLKCTWAKQAEVLK 251 (762)
Q Consensus 236 ~~~~~~~~~~~~~~~~ 251 (762)
-.+.+.-|.+-+++++
T Consensus 167 g~vcPanW~~G~~~i~ 182 (194)
T COG0450 167 GEVCPANWKPGDKTIK 182 (194)
T ss_pred CCCccCCCCCCCcccc
Confidence 2234445666555555
No 87
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.71 E-value=2.5e-08 Score=99.79 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=86.7
Q ss_pred CCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccC
Q 004302 85 EFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTIS 160 (762)
Q Consensus 85 ~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~ 160 (762)
.-.+++|+|.|.+|+++++++++||++||+|-.|-|+. -| -..+..|.+++++.+ ++++|.|++|. .
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~Cpd----vC--p~~l~~l~~~~~~l~~~~~~v~~v~ISvDP---~ 99 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPD----VC--PTTLANLSQLQKQLGEEGKDVQFVFISVDP---E 99 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSS----HH--HHHHHHHHHHHHHHHHTTTTEEEEEEESST---T
T ss_pred CccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCc----cC--HHHHHHHHHHHHHhhhccCceEEEEEEeCC---C
Confidence 34467799999999999999999999999999999975 47 777777777777543 39999999986 3
Q ss_pred cCCHHHHHHHHHhcCCCcceeeCCCC---ccccccCc--------------------eEEEEcCCCCEEEEecC
Q 004302 161 AVDQTRLVEMLMKEYITFPILLSNKN---FPQMENGA--------------------CYLLSKDFGNARVFHEN 211 (762)
Q Consensus 161 e~~~~~v~~f~~k~~itfPVl~D~~~---~~~~~ygv--------------------~t~lId~~G~iv~~~~G 211 (762)
.++++.+++|+++++..+.-+..... .+.+.|++ ..+|||++|+++....+
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 45788999999999888765543221 12222221 14999999999987654
No 88
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.71 E-value=6.4e-07 Score=94.16 Aligned_cols=192 Identities=12% Similarity=0.072 Sum_probs=130.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEE-ecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDC-IGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~-iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
..|..|+.++ +|.++..+.+.|.|=.+|+ +|++..+ +|+| .+|+||.+.+ ++..+|+|+++ .
T Consensus 62 ~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~G-------------a~Phgiv~gp-dg~~Witd~~~-a 125 (353)
T COG4257 62 SAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSG-------------ASPHGIVVGP-DGSAWITDTGL-A 125 (353)
T ss_pred CCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCC-------------CCCceEEECC-CCCeeEecCcc-e
Confidence 4678899995 7889999999999999998 7888765 5554 5699999998 78999999998 9
Q ss_pred EEEEeCCCCEEEEEeecCC--CCCCCCc-----hhhhhhhccCccccCCCccC---CCCCCCCCCcceEEEcCCCcEEEE
Q 004302 343 IRRADMGRRVLETVYPTSG--ISKKNNS-----LWAWIMEKLGFERDNDTKSE---KLDPQSLIFPWHLMKSEDDNLLII 412 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~--~~~~G~~-----~~~~~~~~~G~~~~~~~~~~---~~~~~~L~~P~gIavd~dG~LYVA 412 (762)
|+++|.++..++++-=.++ ...-... ..-|+..+.|....-|.... .+..-+=..|+||++.+||.+|++
T Consensus 126 I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 126 IGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred eEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEE
Confidence 9999999998888731111 0000000 01255555554332221100 011111236999999999999999
Q ss_pred ECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEE
Q 004302 413 NRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHIL 492 (762)
Q Consensus 413 D~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LY 492 (762)
....+-|-++|+.++.-..+...++ +....+.+. +...++++
T Consensus 206 slagnaiaridp~~~~aev~p~P~~-------------------------------------~~~gsRriw-sdpig~~w 247 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNA-------------------------------------LKAGSRRIW-SDPIGRAW 247 (353)
T ss_pred eccccceEEcccccCCcceecCCCc-------------------------------------ccccccccc-cCccCcEE
Confidence 9999999999987664332221111 000011111 24578999
Q ss_pred EEECCCCEEEEEECCCCc
Q 004302 493 LCDIVGQRIMRLNRESGV 510 (762)
Q Consensus 493 VADt~NhRIrkidl~~~~ 510 (762)
+++.++.++.+||.....
T Consensus 248 ittwg~g~l~rfdPs~~s 265 (353)
T COG4257 248 ITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccCCceeeEeCccccc
Confidence 999999999999998754
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.68 E-value=2.7e-08 Score=116.55 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=72.9
Q ss_pred cccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 101 IHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 101 v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
+..+..+||+|+|+|||+||++| +...|.+ .++++++++++++-|+.++ +.++.+++++++++
T Consensus 467 l~~a~~~gK~VlVdF~A~WC~~C-------k~~e~~~~~~~~v~~~l~~~~~v~vDvt~------~~~~~~~l~~~~~v- 532 (571)
T PRK00293 467 LAEAKGKGKPVMLDLYADWCVAC-------KEFEKYTFSDPQVQQALADTVLLQADVTA------NNAEDVALLKHYNV- 532 (571)
T ss_pred HHHHHhcCCcEEEEEECCcCHhH-------HHHHHHhcCCHHHHHHhcCCEEEEEECCC------CChhhHHHHHHcCC-
Confidence 34445679999999999999866 6655554 6788888888888888775 23344566666653
Q ss_pred cceeeCCCCccccccCce-EEEEcCCCCEE--EEecCCcCHHHHHHHHHHH
Q 004302 178 FPILLSNKNFPQMENGAC-YLLSKDFGNAR--VFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 178 fPVl~D~~~~~~~~ygv~-t~lId~~G~iv--~~~~G~~~~~~L~~~l~~l 225 (762)
.++| ++++|++|+++ .++.|+.+.+++.+.++++
T Consensus 533 --------------~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 --------------LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred --------------CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 3567 47889999995 6789999999998888875
No 90
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.68 E-value=9.4e-09 Score=93.92 Aligned_cols=101 Identities=12% Similarity=-0.111 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHH---HHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKS---IQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~---L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+||++||.||++||+.| ++.-+.+.+ +...+.+ +.++.++.++ +.....+++...+..++...
T Consensus 4 ~~k~~v~~F~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 70 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYC-------KKLEKELFPDNDVARYLKDDFQVIFVNIDD------SRDESEAVLDFDGQKNVRLS 70 (112)
T ss_dssp TSSEEEEEEE-TT-HHH-------HHHHHHHHHHHHHHCEEHCECEEEECESHS------HHHHHHHHHSHTCHSSCHHH
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHhhcCeEEEEEecCC------cccccccccccccchhhhHH
Confidence 69999999999999866 866677765 4444544 8899998876 33344445554443222221
Q ss_pred CCCCccccccCc---eE-EEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 183 SNKNFPQMENGA---CY-LLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 183 D~~~~~~~~ygv---~t-~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
. ..+...|++ |+ +++|++|+++.+..|..+.++|.+.|
T Consensus 71 ~--~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 N--KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp H--HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred H--HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 1 134445554 44 88889999999999999999988765
No 91
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.67 E-value=1.1e-07 Score=98.97 Aligned_cols=91 Identities=8% Similarity=-0.086 Sum_probs=69.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++++|+|||+||++| ++.+|.+++++++|++ +.|..|+.+. . ....+++++.
T Consensus 51 ~~~~vlV~FyApWC~~C-------k~~~P~~e~la~~~~~~v~~~~VD~~~------~----~~l~~~~~I~-------- 105 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHC-------RKMAPAWERLAKALKGQVNVADLDATR------A----LNLAKRFAIK-------- 105 (224)
T ss_pred CCCCEEEEEECCCChHH-------HHHHHHHHHHHHHcCCCeEEEEecCcc------c----HHHHHHcCCC--------
Confidence 46899999999999866 9999999999999998 7777665543 2 2334444442
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhc
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
++|+ ++++ +|+++.+..|+.+.++|.+.+.+...+..
T Consensus 106 -------~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 106 -------GYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred -------cCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 3455 4444 79999899999999999999998886543
No 92
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.67 E-value=1.1e-07 Score=87.99 Aligned_cols=73 Identities=10% Similarity=-0.090 Sum_probs=57.1
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCc
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNF 187 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~ 187 (762)
+++|||+|||+||+|| +...|.|+++.++|+++.|+-|+.+. . ...+++++.
T Consensus 24 ~~~vvv~F~a~~c~~C-------~~l~~~l~~la~~~~~v~f~~vd~~~------~-----~l~~~~~i~---------- 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRC-------KILDSHLEELAAKYPETKFVKINAEK------A-----FLVNYLDIK---------- 75 (113)
T ss_pred CCEEEEEEeCCCCCcH-------HHHHHHHHHHHHHCCCcEEEEEEchh------h-----HHHHhcCCC----------
Confidence 6899999999999866 99999999999999998888877653 1 444555542
Q ss_pred cccccCceEEEEcCCCCEEEEecCCc
Q 004302 188 PQMENGACYLLSKDFGNARVFHENSL 213 (762)
Q Consensus 188 ~~~~ygv~t~lId~~G~iv~~~~G~~ 213 (762)
++|++++=++|+++.+..|..
T Consensus 76 -----~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 76 -----VLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred -----cCCEEEEEECCEEEEEEecHH
Confidence 456766777899998887743
No 93
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.66 E-value=1.3e-07 Score=83.75 Aligned_cols=87 Identities=8% Similarity=-0.024 Sum_probs=66.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++++|.||++||++| ++..|.|+++.+++++ +.|+.|+.+. .. .+.+++++.
T Consensus 13 ~~~~vvi~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v~-------- 67 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPC-------KMIAPILEELAKEYEGKVKFVKLNVDE------NP----DIAAKYGIR-------- 67 (101)
T ss_pred cCCcEEEEEECCCCHHH-------HHhCHHHHHHHHHhcCCeEEEEEECCC------CH----HHHHHcCCC--------
Confidence 36899999999999866 9999999999999986 9999998765 22 233333331
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
++|++++=++|+++....|..+.++|.+.|++.
T Consensus 68 -------~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 68 -------SIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -------cCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 356544447899998899999988888888754
No 94
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.66 E-value=5.3e-08 Score=90.96 Aligned_cols=83 Identities=5% Similarity=-0.093 Sum_probs=61.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHH-HhcCCCcceeeCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEML-MKEYITFPILLSN 184 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~-~k~~itfPVl~D~ 184 (762)
.++++||.|||+||+|| +..+|.++++.++|++ +.|..|+.+. ... .. ++++|
T Consensus 28 ~~~~vlV~FyA~WC~~C-------k~l~p~~~~la~~~~~~v~~~~Vd~d~------~~~----l~~~~~~I-------- 82 (113)
T cd03006 28 DAEVSLVMYYAPWDAQS-------QAARQEFEQVAQKLSDQVLFVAINCWW------PQG----KCRKQKHF-------- 82 (113)
T ss_pred CCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHhcCCeEEEEEECCC------ChH----HHHHhcCC--------
Confidence 57899999999999876 9999999999999998 8899998775 221 22 23343
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
-+.||+++=++|+......|..+.+.|...
T Consensus 83 -------~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 83 -------FYFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred -------cccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 134554333678877778898888777653
No 95
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.66 E-value=6.4e-08 Score=86.56 Aligned_cols=80 Identities=10% Similarity=-0.067 Sum_probs=58.8
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
+++|+|||+||++| +..+|.+++++++|++ +.++.|+.+. .. ...+++++
T Consensus 18 ~~lv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~v--------- 71 (102)
T cd03005 18 NHFVKFFAPWCGHC-------KRLAPTWEQLAKKFNNENPSVKIAKVDCTQ------HR----ELCSEFQV--------- 71 (102)
T ss_pred CEEEEEECCCCHHH-------HHhCHHHHHHHHHHhccCCcEEEEEEECCC------Ch----hhHhhcCC---------
Confidence 49999999999866 9999999999999864 8888887654 11 22223332
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
.++|++++=++|+.+..+.|..+.++|.+.
T Consensus 72 ------~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 72 ------RGYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred ------CcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence 235654444789988899999998877654
No 96
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.65 E-value=8e-08 Score=87.30 Aligned_cols=84 Identities=4% Similarity=-0.210 Sum_probs=57.7
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
++++++|+|||+||+|| ++++|.|++++++|++ +.+..++.+. .. .+.+++++
T Consensus 14 ~~~~vlv~f~a~wC~~C-------~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~------~~----~~~~~~~I------ 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHC-------KKLEPVWNEVGAELKSSGSPVRVGKLDATA------YS----SIASEFGV------ 70 (104)
T ss_pred cCCeEEEEEECCCCHHH-------HhhChHHHHHHHHHHhcCCcEEEEEEECcc------CH----hHHhhcCC------
Confidence 46799999999999866 9999999999999842 6666666543 11 22223332
Q ss_pred CCCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.++|+ +++ ++| ....+.|..+.++|.+.+++
T Consensus 71 ---------~~~Pt~~l~-~~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 71 ---------RGYPTIKLL-KGD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ---------ccccEEEEE-cCC-CceeecCCCCHHHHHHHHHh
Confidence 13554 455 344 45667898888888777764
No 97
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.64 E-value=9e-09 Score=96.50 Aligned_cols=96 Identities=10% Similarity=-0.090 Sum_probs=58.7
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCc
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITF 178 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itf 178 (762)
.+..+..+||+|+|+|||+||+|| +...|.+.++.+.+.. ..++.|+++. +.+...+ ++++.
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C-------~~~~~~~~~~~~~~~~~~~fv~v~vd~------~~~~~~~---~~~~~- 73 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGAC-------KALKPKFAESKEISELSHNFVMVNLED------DEEPKDE---EFSPD- 73 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHH-------HHHHHHHhhhHHHHhhcCcEEEEEecC------CCCchhh---hcccC-
Confidence 455566789999999999999876 9999999997665533 4455555554 1111111 11110
Q ss_pred ceeeCCCCccccccCceE-EEEcCCCCEEEE---ecCCcCHHHHHHHHHH
Q 004302 179 PILLSNKNFPQMENGACY-LLSKDFGNARVF---HENSLDIGMLNKAVEE 224 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv~t-~lId~~G~iv~~---~~G~~~~~~L~~~l~~ 224 (762)
.-++|+ ++++++|+++.+ ..|.-+.+.....|+.
T Consensus 74 ------------g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 74 ------------GGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred ------------CCccceEEEECCCCCCchhhccCCCCccccccCCCHHH
Confidence 002774 889999999875 3454444443333333
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.64 E-value=7.3e-08 Score=85.66 Aligned_cols=82 Identities=13% Similarity=-0.081 Sum_probs=59.2
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC-CCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF-PQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y-~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+|+|+|+|||+||++| ++..|.|+++.+++ +++.++.|+.+. . .++.+++++
T Consensus 14 ~~~v~v~f~~~~C~~C-------~~~~~~l~~l~~~~~~~i~~~~vd~~~------~----~~~~~~~~i---------- 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPC-------KQMNQVFEELAKEAFPSVLFLSIEAEE------L----PEISEKFEI---------- 66 (97)
T ss_pred CCEEEEEEECCCCHHH-------HHHhHHHHHHHHHhCCceEEEEEcccc------C----HHHHHhcCC----------
Confidence 7999999999999866 99999999999995 458888886543 1 122333332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
.++|++++-++|+++.++.|.. .++|.+.|
T Consensus 67 -----~~~Pt~~~~~~g~~~~~~~g~~-~~~l~~~~ 96 (97)
T cd02984 67 -----TAVPTFVFFRNGTIVDRVSGAD-PKELAKKV 96 (97)
T ss_pred -----ccccEEEEEECCEEEEEEeCCC-HHHHHHhh
Confidence 2456655556899999999964 45666554
No 99
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.64 E-value=5.2e-08 Score=95.26 Aligned_cols=105 Identities=9% Similarity=-0.098 Sum_probs=81.5
Q ss_pred eeecccCCCccccC-CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHH
Q 004302 91 HLWFNIVEDNIHFF-KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQT 165 (762)
Q Consensus 91 ~~w~n~~g~~v~Ls-d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~ 165 (762)
..+.+.+|..+-.+ .++||+|.|+|=|.||+|| +.--|.|+++|++-.+ +.||-|+.|. +.+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pC-------R~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~------~~~ 81 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPC-------RDFTPILKDFYEELKDNAAPFEVVFVSSDR------DEE 81 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCch-------hhCCchHHHHHHHHHhcCCceEEEEEecCC------CHH
Confidence 34455555566665 7899999999999999876 9999999999997653 9999999987 788
Q ss_pred HHHHHHHhcCCCcceeeCCC---CccccccC---ce-EEEEcCCCCEEEE
Q 004302 166 RLVEMLMKEYITFPILLSNK---NFPQMENG---AC-YLLSKDFGNARVF 208 (762)
Q Consensus 166 ~v~~f~~k~~itfPVl~D~~---~~~~~~yg---v~-t~lId~~G~iv~~ 208 (762)
+...|++++...+..+-=.+ ......|. +| ..+++++|+++..
T Consensus 82 ~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 82 SLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred HHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 99999999888876554333 23344564 45 4899999988854
No 100
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.59 E-value=1.4e-07 Score=92.62 Aligned_cols=80 Identities=6% Similarity=-0.116 Sum_probs=58.6
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+++++||+|||+||+|| +..+|.++++.++|++ ++|+.|+.+. .. +..+++++.-.
T Consensus 45 ~~~~~vvV~Fya~wC~~C-------k~l~p~l~~la~~~~~~~v~f~~VDvd~------~~----~la~~~~V~~~---- 103 (152)
T cd02962 45 DKRVTWLVEFFTTWSPEC-------VNFAPVFAELSLKYNNNNLKFGKIDIGR------FP----NVAEKFRVSTS---- 103 (152)
T ss_pred cCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHcccCCeEEEEEECCC------CH----HHHHHcCceec----
Confidence 357899999999999876 9999999999999974 9999999876 33 23344443210
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecC
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHEN 211 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G 211 (762)
+.--++||+++=++|+.+.+..|
T Consensus 104 -----~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 -----PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred -----CCcCCCCEEEEEECCEEEEEEec
Confidence 00013677666679999998887
No 101
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.59 E-value=1.8e-07 Score=87.28 Aligned_cols=54 Identities=7% Similarity=-0.099 Sum_probs=45.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
.+|+|||.|||+||+|| +..=|.|.+|.++|++ +.|.-|++++ +.++.++++|.
T Consensus 13 ~~klVVVdF~a~WC~pC-------k~mdp~l~ela~~~~~~~~f~kVDVDe----------v~dva~~y~I~ 67 (114)
T cd02986 13 AEKVLVLRFGRDEDAVC-------LQLDDILSKTSHDLSKMASIYLVDVDK----------VPVYTQYFDIS 67 (114)
T ss_pred CCCEEEEEEeCCCChhH-------HHHHHHHHHHHHHccCceEEEEEeccc----------cHHHHHhcCce
Confidence 68999999999999977 7777999999999999 8888887764 55666676663
No 102
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.58 E-value=1.4e-07 Score=83.98 Aligned_cols=85 Identities=7% Similarity=-0.071 Sum_probs=63.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+|++++|+||++||++| ++.+|.++++++.+++ +.+..++.+. . ..+.+++++.
T Consensus 12 ~~~~~~i~f~~~~C~~c-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------~----~~~~~~~~i~------ 68 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHC-------KNLAPEYEKLAKELKGDPDIVLAKVDATA------E----KDLASRFGVS------ 68 (102)
T ss_pred cCCcEEEEEECCCCHHH-------HhhChHHHHHHHHhccCCceEEEEEEccc------h----HHHHHhCCCC------
Confidence 79999999999999866 9999999999999985 7777776553 1 2333444432
Q ss_pred CCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
++|+ +++++.+. +....|..+.+.|...|++
T Consensus 69 ---------~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 69 ---------GFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred ---------cCCEEEEecCCCc-ceeecCCCCHHHHHHHHHh
Confidence 3554 57776666 6778898888888887775
No 103
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.56 E-value=2.1e-07 Score=85.57 Aligned_cols=84 Identities=10% Similarity=-0.045 Sum_probs=58.1
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHh-cCCCcceee
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMK-EYITFPILL 182 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k-~~itfPVl~ 182 (762)
-+||+++|+|||+||++| ++..|.+.+++++|++ +.+..|+.+. +.. .+.++ +++
T Consensus 19 ~~~k~vlv~f~a~wC~~C-------~~~~~~~~~la~~~~~~~~~~~~vd~d~------~~~---~~~~~~~~v------ 76 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFC-------QAMEASYEELAEKLAGSNVKVAKFNADG------EQR---EFAKEELQL------ 76 (109)
T ss_pred hcCCCEEEEEECCCCHHH-------HHHhHHHHHHHHHhccCCeEEEEEECCc------cch---hhHHhhcCC------
Confidence 468999999999999866 9999999999999985 8888888764 111 12221 222
Q ss_pred CCCCccccccCceE-EEEcCCCCEEEEecCC-cCHHHHHH
Q 004302 183 SNKNFPQMENGACY-LLSKDFGNARVFHENS-LDIGMLNK 220 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~~G~iv~~~~G~-~~~~~L~~ 220 (762)
.++|+ +++++.++......|+ .+.+.|.+
T Consensus 77 ---------~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 77 ---------KSFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred ---------CcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 23454 4566666666667774 56666644
No 104
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.56 E-value=2.6e-07 Score=86.04 Aligned_cols=83 Identities=13% Similarity=-0.060 Sum_probs=66.1
Q ss_pred CCCCEEEEEEeccC--CCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 106 RGGAFLVLAGRFVD--NCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 106 ~rGK~VvLnFWAtW--C~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
-.|.++||.|||+| |+|| +...|.|+++.++|++ +.|+-|+.++ .. +...+++|
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c-------~~i~P~leela~e~~~~v~f~kVdid~------~~----~la~~f~V------ 81 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEV-------LDVAVVLPELLKAFPGRFRAAVVGRAD------EQ----ALAARFGV------ 81 (111)
T ss_pred hCCCCEEEEecCCcccCcch-------hhhHhHHHHHHHHCCCcEEEEEEECCC------CH----HHHHHcCC------
Confidence 36889999999997 9866 9999999999999998 8888888875 22 22222221
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
-++||+++=++|+++....|..++++|.+
T Consensus 82 ---------~sIPTli~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 82 ---------LRTPALLFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred ---------CcCCEEEEEECCEEEEEEeCccCHHHHhh
Confidence 25778888889999999999999888753
No 105
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.56 E-value=3.3e-07 Score=92.00 Aligned_cols=84 Identities=8% Similarity=-0.075 Sum_probs=62.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
++++|||+|||+||+|| ....|.|.+|.++|+.+.|+-|+.+. . ....++++
T Consensus 82 ~~~~VVV~Fya~wc~~C-------k~m~~~l~~LA~~~~~vkF~kVd~d~------~-----~l~~~f~v---------- 133 (175)
T cd02987 82 KDTTVVVHIYEPGIPGC-------AALNSSLLCLAAEYPAVKFCKIRASA------T-----GASDEFDT---------- 133 (175)
T ss_pred CCcEEEEEEECCCCchH-------HHHHHHHHHHHHHCCCeEEEEEeccc------h-----hhHHhCCC----------
Confidence 45799999999999876 88999999999999999999988764 1 22333332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCC-------cCHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENS-------LDIGMLNKAVE 223 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~-------~~~~~L~~~l~ 223 (762)
..+||+++=++|+++.+..|. .+.++|+..|.
T Consensus 134 -----~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 134 -----DALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred -----CCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 257888888899999876543 34555665554
No 106
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.1e-07 Score=101.09 Aligned_cols=88 Identities=3% Similarity=-0.068 Sum_probs=72.7
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
-+-+||||+|||+||+|| +.=+|.|.++..+|++ |.+.-||+|. .+.
T Consensus 41 S~~~PVlV~fWap~~~~c-------~qL~p~Lekla~~~~G~f~LakvN~D~------~p~------------------- 88 (304)
T COG3118 41 SREVPVLVDFWAPWCGPC-------KQLTPTLEKLAAEYKGKFKLAKVNCDA------EPM------------------- 88 (304)
T ss_pred ccCCCeEEEecCCCCchH-------HHHHHHHHHHHHHhCCceEEEEecCCc------chh-------------------
Confidence 456799999999999976 9999999999999999 9999999886 222
Q ss_pred CCccccccC---ceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 185 KNFPQMENG---ACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 185 ~~~~~~~yg---v~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+...+| +|+++.=++|+.+.-..|....+.+++.|+.++..
T Consensus 89 ---vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 89 ---VAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ---HHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 222333 56766667999999999999999999999887765
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.51 E-value=0.00016 Score=75.10 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=57.4
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|.++++++.+..+|++...++.|+++|. +|+.+..+-.+ ..|..++++++++.+|++....++|+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-------------PDPELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-------------CCccEEEECCCCCEEEEEcCCCCeEE
Confidence 46789999877789999888999999997 56665544221 12667889987778999988778999
Q ss_pred EEeCCCCE
Q 004302 345 RADMGRRV 352 (762)
Q Consensus 345 kid~~~g~ 352 (762)
.+|+.++.
T Consensus 99 ~~d~~~~~ 106 (300)
T TIGR03866 99 VIDIETRK 106 (300)
T ss_pred EEECCCCe
Confidence 99987654
No 108
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=6.8e-06 Score=89.50 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=94.5
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCC-----------CcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEec
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSN-----------HHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHK 328 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~-----------nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~ 328 (762)
....+++|-.+.|++ .|++|+.|.. ..+++++++.|..+..+-. .+..|-|||++|
T Consensus 106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~------------~~~~~NGla~Sp 172 (307)
T COG3386 106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD------------DLTIPNGLAFSP 172 (307)
T ss_pred CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC------------cEEecCceEECC
Confidence 345689999999996 7999999988 2468888887777766532 266799999999
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc
Q 004302 329 DDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN 408 (762)
Q Consensus 329 ~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~ 408 (762)
++..||++||..++|.+++.... + |..+... .+..... .=-.|-|+++|.+|+
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~---~----g~~~~~~----~~~~~~~----------------~~G~PDG~~vDadG~ 225 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPA---T----GPIGGRR----GFVDFDE----------------EPGLPDGMAVDADGN 225 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcc---c----CccCCcc----eEEEccC----------------CCCCCCceEEeCCCC
Confidence 88899999999999999987541 1 1000000 0000000 012599999999999
Q ss_pred EEEEECCC-CEEEEEECCCCcEEEE
Q 004302 409 LLIINRSF-ETLWIMDLASGEIKEA 432 (762)
Q Consensus 409 LYVAD~gN-~rI~v~d~~~g~I~ti 432 (762)
||++-..+ .+|.+|++++..+.++
T Consensus 226 lw~~a~~~g~~v~~~~pdG~l~~~i 250 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPDGKLLGEI 250 (307)
T ss_pred EEEecccCCceEEEECCCCcEEEEE
Confidence 99755555 4999999985444444
No 109
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.49 E-value=5.8e-06 Score=91.90 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=79.9
Q ss_pred ccCCcceEEEccCCCEEEEEeCCC------------cEEEEEcC---CCcEE--EEecCCCCCCCCcccccccCCcceEE
Q 004302 263 LLHFPGCISADESGNRLFLSDSNH------------HRIIVFDG---NGKIL--DCIGSCPGFEDGEFESSKLMRPAASF 325 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~n------------hrI~v~d~---~G~i~--~~iGsG~G~~DG~~~~a~fn~P~GIa 325 (762)
.|..|.+|++|+ +|+|||++..+ +||++++. +|+.. ..+.. .+..|.||+
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------------~l~~p~Gi~ 78 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------------ELSMVTGLA 78 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------------CCCCcccee
Confidence 589999999995 79999998633 48988864 45532 33322 267899999
Q ss_pred EecCCCeEEEEeCCCCeEEEE-eCCCC-----EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcc
Q 004302 326 YHKDDDCLYIVDSENHAIRRA-DMGRR-----VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 399 (762)
Q Consensus 326 vd~~~g~LYVADt~NhrIRki-d~~~g-----~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~ 399 (762)
+.+ ++ |||++. .+|.++ |.++. ..++++- + ++.. .......|.
T Consensus 79 ~~~-~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~-~----------------~~~~----------~~~~~~~~~ 127 (367)
T TIGR02604 79 VAV-GG-VYVATP--PDILFLRDKDGDDKADGEREVLLS-G----------------FGGQ----------INNHHHSLN 127 (367)
T ss_pred Eec-CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEE-c----------------cCCC----------CCccccccc
Confidence 985 56 999985 458877 33221 2223321 1 0000 001134588
Q ss_pred eEEEcCCCcEEEEECCC-------------------CEEEEEECCCCcEE
Q 004302 400 HLMKSEDDNLLIINRSF-------------------ETLWIMDLASGEIK 430 (762)
Q Consensus 400 gIavd~dG~LYVAD~gN-------------------~rI~v~d~~~g~I~ 430 (762)
++++++||.|||++-.+ ..|++++++++.+.
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e 177 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR 177 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE
Confidence 99999999999988732 35677776665543
No 110
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.48 E-value=7.3e-07 Score=76.38 Aligned_cols=83 Identities=7% Similarity=-0.069 Sum_probs=63.8
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCc
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNF 187 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~ 187 (762)
+++++|.||++||++| .+..|.++++.++++++.++.|+.+. .. ++.+++++
T Consensus 10 ~~~~ll~~~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~i~~~~------~~----~~~~~~~v----------- 61 (93)
T cd02947 10 AKPVVVDFWAPWCGPC-------KAIAPVLEELAEEYPKVKFVKVDVDE------NP----ELAEEYGV----------- 61 (93)
T ss_pred CCcEEEEEECCCChhH-------HHhhHHHHHHHHHCCCceEEEEECCC------Ch----hHHHhcCc-----------
Confidence 3899999999999866 99999999999997779999988764 22 23333332
Q ss_pred cccccCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 188 PQMENGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 188 ~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
.++|++++-++|+++....|..+.+.|...|
T Consensus 62 ----~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 62 ----RSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ----ccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence 3567766667899999999988877777665
No 111
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.48 E-value=5.3e-07 Score=80.19 Aligned_cols=86 Identities=7% Similarity=-0.084 Sum_probs=70.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.++++||.||+.||++| +...|.|.++.++|++ +.++-|+.+. . ..+.+++++
T Consensus 16 ~~~~vvv~f~~~~C~~C-------~~~~~~~~~~~~~~~~~v~~~~vd~~~------~----~~l~~~~~v--------- 69 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPC-------KAFKPILEKLAKEYKDNVKFAKVDCDE------N----KELCKKYGV--------- 69 (103)
T ss_dssp TSSEEEEEEESTTSHHH-------HHHHHHHHHHHHHTTTTSEEEEEETTT------S----HHHHHHTTC---------
T ss_pred cCCCEEEEEeCCCCCcc-------ccccceecccccccccccccchhhhhc------c----chhhhccCC---------
Confidence 47999999999999876 9999999999999995 9999988765 2 334444443
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEE 224 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ 224 (762)
.++|++++=++|+.+.+..|..+.+.|.+.|++
T Consensus 70 ------~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 70 ------KSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ------SSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred ------CCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 245677777889999999999999999988874
No 112
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.47 E-value=5.1e-07 Score=80.71 Aligned_cols=84 Identities=10% Similarity=-0.105 Sum_probs=60.7
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--C-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--Q-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.+|+++|.|||+||++| ++..|.+.++.++++ + +.++.|+.+. . ..++.+++++
T Consensus 17 ~~~~~~v~f~a~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~---~~~~~~~~~i------- 73 (105)
T cd02998 17 DKKDVLVEFYAPWCGHC-------KNLAPEYEKLAAVFANEDDVVIAKVDADE------A---NKDLAKKYGV------- 73 (105)
T ss_pred CCCcEEEEEECCCCHHH-------HhhChHHHHHHHHhCCCCCEEEEEEECCC------c---chhhHHhCCC-------
Confidence 47899999999999866 999999999999987 3 8888877653 1 2233444433
Q ss_pred CCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
.++|+ +++++.|+......|..+.++|.+.
T Consensus 74 --------~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 74 --------SGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred --------CCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 24564 5667666677778888887777654
No 113
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.46 E-value=5.7e-07 Score=84.98 Aligned_cols=89 Identities=10% Similarity=-0.051 Sum_probs=67.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcch--hhcHHHHHHHHHC--CC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTV--VTFEKVKSIQQSF--PQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~--~emP~L~~L~~~y--~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
..++||+.|||+||+|- +| + ...|.|.++.++| ++ +.|.-|+.+. . .+..++++|
T Consensus 26 ~~~~vvv~f~a~wc~p~---~C--k~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~------~----~~La~~~~I----- 85 (120)
T cd03065 26 YDVLCLLYHEPVESDKE---AQ--KQFQMEELVLELAAQVLEDKGIGFGLVDSKK------D----AKVAKKLGL----- 85 (120)
T ss_pred CCceEEEEECCCcCChh---hC--hhhcchhhHHHHHHHHhhcCCCEEEEEeCCC------C----HHHHHHcCC-----
Confidence 35699999999999751 25 7 7778899999998 65 9999999876 2 223334432
Q ss_pred eCCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHH
Q 004302 182 LSNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll 226 (762)
-++||+++=++|+++. ..|..+.+.|.+.|++++
T Consensus 86 ----------~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 ----------DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ----------ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 2456765557999887 899999999999999875
No 114
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.45 E-value=6.6e-07 Score=83.34 Aligned_cols=74 Identities=7% Similarity=-0.126 Sum_probs=55.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
++++|||+||++||+|| +..-|.|++|.++|+++.++-|+.+. .. ...+++++
T Consensus 21 ~~~~vvV~f~a~~c~~C-------~~~~p~l~~la~~~~~i~f~~Vd~~~------~~----~l~~~~~v---------- 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRC-------KIMDKHLEILAKKHLETKFIKVNAEK------AP----FLVEKLNI---------- 73 (113)
T ss_pred CCCcEEEEEECCCCccH-------HHHHHHHHHHHHHcCCCEEEEEEccc------CH----HHHHHCCC----------
Confidence 35799999999999866 99999999999999999998888765 21 22233332
Q ss_pred ccccccCceEEEEcCCCCEEEEecCC
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENS 212 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~ 212 (762)
.++|++++=++|+.+.++.|.
T Consensus 74 -----~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 74 -----KVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred -----ccCCEEEEEECCEEEEEEECc
Confidence 245677777788888776553
No 115
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.44 E-value=7.2e-07 Score=83.00 Aligned_cols=89 Identities=11% Similarity=-0.076 Sum_probs=63.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+++.++|.|||+||+|| +...|.|+++.++++.+++.-|+.+. .. +..+++++
T Consensus 21 ~~~~vvv~f~a~wC~~C-------~~~~~~l~~la~~~~~i~~~~vd~d~------~~----~l~~~~~v---------- 73 (113)
T cd02975 21 NPVDLVVFSSKEGCQYC-------EVTKQLLEELSELSDKLKLEIYDFDE------DK----EKAEKYGV---------- 73 (113)
T ss_pred CCeEEEEEeCCCCCCCh-------HHHHHHHHHHHHhcCceEEEEEeCCc------CH----HHHHHcCC----------
Confidence 46679999999999866 99999999999998668888888765 22 22233332
Q ss_pred ccccccCceEEEEcCCCCEEE--EecCCcCHHHHHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARV--FHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~--~~~G~~~~~~L~~~l~~ll~ 227 (762)
.++|+++|-++|.... .+.|.....++.+.|..++.
T Consensus 74 -----~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 74 -----ERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred -----CcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 2356665554443332 57788888899999988875
No 116
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-06 Score=85.69 Aligned_cols=130 Identities=9% Similarity=0.111 Sum_probs=97.2
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCc--CCHHH
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISA--VDQTR 166 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e--~~~~~ 166 (762)
|+-.|.+|+.++|++||||+|||-==||-|+-= ...-..|..|+++|++ ++|++.-+.. |... .+.++
T Consensus 17 f~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T-------~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ-Fg~QEp~~n~E 88 (171)
T KOG1651|consen 17 FSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLT-------ESQYTELNELYEKYKDQGLEILAFPCNQ-FGNQEPGSNEE 88 (171)
T ss_pred eEEecCCCCCccHHHhCCeEEEEEEcccccccc-------hhcchhHHHHHHHHhhCCeEEEEecccc-ccCcCCCCcHH
Confidence 444577788999999999999999999999732 4467899999999986 9999988775 4433 35667
Q ss_pred HHHHHH-hcCCCcceeeCC--CC----ccc----cc-c-----CceE----EEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 167 LVEMLM-KEYITFPILLSN--KN----FPQ----ME-N-----GACY----LLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 167 v~~f~~-k~~itfPVl~D~--~~----~~~----~~-y-----gv~t----~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+..|++ +++..|||+--- .+ .++ .. . .+.| ||+|++|+++.+..-..+..++++.|+.|
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 888885 788899987521 11 111 11 1 2333 99999999999987777778888888888
Q ss_pred HHh
Q 004302 226 IMQ 228 (762)
Q Consensus 226 l~~ 228 (762)
+.+
T Consensus 169 L~~ 171 (171)
T KOG1651|consen 169 LAQ 171 (171)
T ss_pred hcC
Confidence 753
No 117
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.41 E-value=3.1e-07 Score=64.85 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=26.4
Q ss_pred CCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 395 LIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|+.|+||+++++|+|||||++||||++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5789999999999999999999999986
No 118
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.41 E-value=7.9e-07 Score=79.60 Aligned_cols=84 Identities=6% Similarity=-0.155 Sum_probs=58.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++++|.|||+||++| ++..|.+.++.+++++ +.|..++.+. . .+..+++++.
T Consensus 17 ~~~~vlv~f~a~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~id~~~------~----~~~~~~~~i~-------- 71 (103)
T cd03001 17 SDDVWLVEFYAPWCGHC-------KNLAPEWKKAAKALKGIVKVGAVDADV------H----QSLAQQYGVR-------- 71 (103)
T ss_pred CCCcEEEEEECCCCHHH-------HHHhHHHHHHHHHhcCCceEEEEECcc------h----HHHHHHCCCC--------
Confidence 36789999999999866 9999999999999987 8888887654 1 1233444432
Q ss_pred CccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 186 NFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 186 ~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
++|+ +++++.........|..+.++|.+.+
T Consensus 72 -------~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 72 -------GFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -------ccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 3454 44443324455677888888776553
No 119
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.8e-05 Score=81.05 Aligned_cols=233 Identities=16% Similarity=0.186 Sum_probs=144.7
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
-..|.-|++|+++..||+|....+.|.++-. +|.+...++.-...+.|+-+...-..++..-++|++..|+|.|=+..
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 3456899999888899999999999888755 68776665542111111211222234677888888889999999999
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI~ 420 (762)
||..|+++.|.+......- -+ .| ..|++|++.++| ..|+...-|++|-
T Consensus 168 ri~~y~~~dg~L~~~~~~~--v~------------~G-----------------~GPRHi~FHpn~k~aY~v~EL~stV~ 216 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAE--VK------------PG-----------------AGPRHIVFHPNGKYAYLVNELNSTVD 216 (346)
T ss_pred eEEEEEcccCccccccccc--cC------------CC-----------------CCcceEEEcCCCcEEEEEeccCCEEE
Confidence 9999999877665442110 01 11 259999999985 5799999999998
Q ss_pred EEECCC--CcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCC
Q 004302 421 IMDLAS--GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVG 498 (762)
Q Consensus 421 v~d~~~--g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~N 498 (762)
++..++ |++.++ -.++.+|.++- +.. ..--+-++.++..||++|.+-
T Consensus 217 v~~y~~~~g~~~~l-------------------Q~i~tlP~dF~-----------g~~-~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 217 VLEYNPAVGKFEEL-------------------QTIDTLPEDFT-----------GTN-WAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred EEEEcCCCceEEEe-------------------eeeccCccccC-----------CCC-ceeEEEECCCCCEEEEecCCC
Confidence 777665 444433 12334555421 111 000133456777999999988
Q ss_pred CEEE--EEECCCCcEEEEeeccccccCCCceeec-cccceeecccccCCCccccceeeecCCCcee
Q 004302 499 QRIM--RLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLPGRID 561 (762)
Q Consensus 499 hRIr--kidl~~~~~sti~~s~~G~lG~p~~~~~-pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~ 561 (762)
+.|- +|+..++.++.++.-..+. -.|--|++ |-++.--.++ +..-.-++=+++-..|++.
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg-~~PR~F~i~~~g~~Liaa~--q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEG-QFPRDFNINPSGRFLIAAN--QKSDNITVFERDKETGRLT 328 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCC-cCCccceeCCCCCEEEEEc--cCCCcEEEEEEcCCCceEE
Confidence 8654 5566778777665433321 13655655 3444333333 2222233344566778775
No 120
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.41 E-value=7.6e-07 Score=90.70 Aligned_cols=82 Identities=9% Similarity=0.037 Sum_probs=62.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
++++|||+|||+||+|| +...|.|.+|.++|+++.|+-|+.+. .+.+ ||+
T Consensus 101 ~~~~VVV~Fya~wc~~C-------~~m~~~l~~LA~k~~~vkFvkI~ad~-------------~~~~----~~i------ 150 (192)
T cd02988 101 KDTWVVVHLYKDGIPLC-------RLLNQHLSELARKFPDTKFVKIISTQ-------------CIPN----YPD------ 150 (192)
T ss_pred CCCEEEEEEECCCCchH-------HHHHHHHHHHHHHCCCCEEEEEEhHH-------------hHhh----CCC------
Confidence 46799999999999876 99999999999999999998887542 0122 222
Q ss_pred ccccccCceEEEEcCCCCEEEEecCC-------cCHHHHHHHHH
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENS-------LDIGMLNKAVE 223 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~-------~~~~~L~~~l~ 223 (762)
-++||+++=++|+++.+..|. .+.++|+..|.
T Consensus 151 -----~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 151 -----KNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred -----CCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 257898888999999988773 44556666554
No 121
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.39 E-value=3.8e-06 Score=86.60 Aligned_cols=130 Identities=10% Similarity=-0.009 Sum_probs=97.6
Q ss_pred ceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC-----CeEEEEEEcCCCccCcCCH
Q 004302 90 HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP-----QLQVIGFLHGCSTISAVDQ 164 (762)
Q Consensus 90 ~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~-----~v~VvgV~~~~~~~~e~~~ 164 (762)
+|++.|.+|+.+++.+++|||++|.|-.|-||. =| -.++..|..++++-. +|+|+.|.+|. ..+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~Cpd----VC--P~~l~~l~~~~~~l~~~~~~~v~vv~itvDP---erDtp 119 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPD----VC--PTTLAELKALLKKLGEGEGDDVQVVFITVDP---ERDTP 119 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCc----cC--hHHHHHHHHHHHHhccccCCCEEEEEEEECC---CCCCH
Confidence 699999999999999999999999999999986 47 888888888888765 29999999986 33467
Q ss_pred HHHHHHHH-hcCCCcceeeCCC---CccccccCc---------------e----EEEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 165 TRLVEMLM-KEYITFPILLSNK---NFPQMENGA---------------C----YLLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 165 ~~v~~f~~-k~~itfPVl~D~~---~~~~~~ygv---------------~----t~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
+.+++|+. ...-.|--+.... ..++++|++ - .||+|++|+++....+....+++...
T Consensus 120 ~~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~ 199 (207)
T COG1999 120 EVLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAAD 199 (207)
T ss_pred HHHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHH
Confidence 77888888 2222222222211 112222221 1 49999999999988777778889999
Q ss_pred HHHHHHh
Q 004302 222 VEELIMQ 228 (762)
Q Consensus 222 l~~ll~~ 228 (762)
|+.++++
T Consensus 200 l~~l~~~ 206 (207)
T COG1999 200 LKKLLKE 206 (207)
T ss_pred HHHHhhc
Confidence 9988764
No 122
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.6e-06 Score=84.95 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCCCceeecccCCCccccCCCCCC-EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC--CeEEEEEEcCCCccCcC
Q 004302 86 FQGPHHLWFNIVEDNIHFFKRGGA-FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP--QLQVIGFLHGCSTISAV 162 (762)
Q Consensus 86 l~g~~~~w~n~~g~~v~Lsd~rGK-~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~--~v~VvgV~~~~~~~~e~ 162 (762)
-+.|++++.|.+|+.++|.++.|+ +||+.|+...- ||+|+ +.-=.+..=|++++ +..|+|++.|+
T Consensus 67 d~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~as----TPGCT--kQaCgFRDnY~k~kka~aeV~GlS~D~------ 134 (211)
T KOG0855|consen 67 DAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAAS----TPGCT--KQACGFRDNYEKFKKAGAEVIGLSGDD------ 134 (211)
T ss_pred CcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCC----CCCcc--cccccccccHHHHhhcCceEEeeccCc------
Confidence 367899999999999999999996 88888886655 46773 33333444444443 38899998764
Q ss_pred CHHHHHHHHHhcCCCcceeeCCCCccccccCce-----------EEEEcCCCCEEEEecCCcC-HHHHHHHHHHH
Q 004302 163 DQTRLVEMLMKEYITFPILLSNKNFPQMENGAC-----------YLLSKDFGNARVFHENSLD-IGMLNKAVEEL 225 (762)
Q Consensus 163 ~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~-----------t~lId~~G~iv~~~~G~~~-~~~L~~~l~~l 225 (762)
....++|..|++++|-+|-|+++.+...+|++ +|++++.|-......-... .-.+.++++.+
T Consensus 135 -s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~ 208 (211)
T KOG0855|consen 135 -SASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFL 208 (211)
T ss_pred -hHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHH
Confidence 67889999999999999999998877766654 4777776544443333333 22355555544
No 123
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.35 E-value=6.5e-07 Score=63.17 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=26.0
Q ss_pred cCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 318 LMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 318 fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
|+.|.||++++ +|+|||||++||||++|
T Consensus 1 f~~P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 67899999995 89999999999999986
No 124
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.35 E-value=9.8e-07 Score=78.89 Aligned_cols=82 Identities=7% Similarity=-0.064 Sum_probs=56.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.|++++|+|||+||++| +..+|.++++.+.|++ +.+.-|+.+. . .+ ..++++
T Consensus 17 ~~~~~~v~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~--~~---~~~~~~------- 71 (104)
T cd02995 17 SDKDVLVEFYAPWCGHC-------KALAPIYEELAEKLKGDDNVVIAKMDATA------N--DV---PSEFVV------- 71 (104)
T ss_pred CCCcEEEEEECCCCHHH-------HHHhhHHHHHHHHhcCCCCEEEEEEeCcc------h--hh---hhhccC-------
Confidence 46899999999999866 9999999999999876 7777776543 1 11 112211
Q ss_pred CCCccccccCceEEEEcCCCC--EEEEecCCcCHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGN--ARVFHENSLDIGMLNKA 221 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~--iv~~~~G~~~~~~L~~~ 221 (762)
.++|++++-+.|+ ......|+.+.++|.+.
T Consensus 72 --------~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 72 --------DGFPTILFFPAGDKSNPIKYEGDRTLEDLIKF 103 (104)
T ss_pred --------CCCCEEEEEcCCCcCCceEccCCcCHHHHHhh
Confidence 3456655555555 44567888887776554
No 125
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.34 E-value=9.4e-07 Score=80.71 Aligned_cols=83 Identities=7% Similarity=-0.132 Sum_probs=58.1
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC----CC---eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF----PQ---LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y----~~---v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
.+++++|+|||+||++| ++..|.++++++++ ++ +.+.-|+.+. . ....+++++.
T Consensus 17 ~~~~vlv~F~a~wC~~C-------~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~------~----~~l~~~~~v~-- 77 (108)
T cd02996 17 SAELVLVNFYADWCRFS-------QMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK------E----SDIADRYRIN-- 77 (108)
T ss_pred cCCEEEEEEECCCCHHH-------HhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC------C----HHHHHhCCCC--
Confidence 46899999999999866 99999999988764 22 7777787764 2 2344555542
Q ss_pred eeeCCCCccccccCceEEEEcCCCCE-EEEecCCcCHHHHHHH
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNA-RVFHENSLDIGMLNKA 221 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~i-v~~~~G~~~~~~L~~~ 221 (762)
++|++++=++|++ .....|..+.++|.+.
T Consensus 78 -------------~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 78 -------------KYPTLKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred -------------cCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence 3455443367884 4667788888777654
No 126
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.34 E-value=7.5e-07 Score=84.07 Aligned_cols=44 Identities=16% Similarity=-0.061 Sum_probs=40.1
Q ss_pred CCCCEEEEEEec-------cCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCC
Q 004302 106 RGGAFLVLAGRF-------VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 106 ~rGK~VvLnFWA-------tWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~ 156 (762)
.+|++|+|+||| +||+|| +...|.|+++.++|++ +.|+-|+.++
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pC-------r~~~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDC-------VKAEPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhH-------HhhchhHHHHHHHCCCCCEEEEEEcCC
Confidence 468999999999 999876 9999999999999995 9999999875
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.31 E-value=0.00017 Score=74.88 Aligned_cols=169 Identities=11% Similarity=0.134 Sum_probs=112.0
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
.|.++++++.+..++++......+..+|.+ ++.+..+..+ ..|.++++++++..||++-...+.|+
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-------------QRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------CCccEEEECCCCCEEEEEcCCCCEEE
Confidence 477899998666667776665677777874 4444332211 24778999987777888766678899
Q ss_pred EEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEE
Q 004302 345 RADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIM 422 (762)
Q Consensus 345 kid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~ 422 (762)
.+|..++.+ .++.... . +.. .. -..|.+++++++|. +|++...+++|.+|
T Consensus 183 i~d~~~~~~~~~~~~~~----~------------~~~-----------~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 183 VIDVATRKVIKKITFEI----P------------GVH-----------PE-AVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred EEEcCcceeeeeeeecc----c------------ccc-----------cc-cCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 999987654 3331110 0 000 00 12588999999875 58998888999999
Q ss_pred ECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEE
Q 004302 423 DLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIM 502 (762)
Q Consensus 423 d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIr 502 (762)
|..++++..... .+ . .+ ...++.+.+..||++....+.|+
T Consensus 235 d~~~~~~~~~~~-~~-------~-----------------------------~~---~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 235 DAKTYEVLDYLL-VG-------Q-----------------------------RV---WQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred ECCCCcEEEEEE-eC-------C-----------------------------Cc---ceEEECCCCCEEEEEcCCCCeEE
Confidence 998876543211 00 0 01 12455566778999988888999
Q ss_pred EEECCCCcE-EEEe
Q 004302 503 RLNRESGVC-SNFQ 515 (762)
Q Consensus 503 kidl~~~~~-sti~ 515 (762)
.+|+.++.+ .++.
T Consensus 275 v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 275 VIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE
Confidence 999999875 4554
No 128
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.30 E-value=7.1e-07 Score=78.15 Aligned_cols=83 Identities=7% Similarity=-0.121 Sum_probs=61.0
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC--CC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF--PQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y--~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
++++++|.||+.||++| ++..|.+.++.+.+ .+ +.++.|+.+. -.++.+++++.
T Consensus 14 ~~~~~~v~f~~~~C~~C-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~~~~i~------ 70 (101)
T cd02961 14 DSKDVLVEFYAPWCGHC-------KALAPEYEKLAKELKGDGKVVVAKVDCTA----------NNDLCSEYGVR------ 70 (101)
T ss_pred CCCcEEEEEECCCCHHH-------HhhhHHHHHHHHHhccCCceEEEEeeccc----------hHHHHHhCCCC------
Confidence 46699999999999866 99999999999999 34 8888887653 22444555441
Q ss_pred CCCccccccCceE-EEEcCCCCEEEEecCCcCHHHHHHH
Q 004302 184 NKNFPQMENGACY-LLSKDFGNARVFHENSLDIGMLNKA 221 (762)
Q Consensus 184 ~~~~~~~~ygv~t-~lId~~G~iv~~~~G~~~~~~L~~~ 221 (762)
++|+ ++++++|+......|..+.+++.+.
T Consensus 71 ---------~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 71 ---------GYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred ---------CCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 3454 6777776777778888877776553
No 129
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.00049 Score=76.43 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCEEEEEeCCC----cEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC---------CCC
Q 004302 276 GNRLFLSDSNH----HRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS---------ENH 341 (762)
Q Consensus 276 ~g~LYVADs~n----hrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt---------~Nh 341 (762)
..++||.|... ++|.+||. +++++..+-.| .+|+|+ ++++++.||||.+ ..+
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-------------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-------------FLPNPV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-------------CCCcee-ECCCCCEEEEEeccccccccCCCCC
Confidence 57899999985 99999998 67887777554 359997 9999999999999 899
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC-CCEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS-FETL 419 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g-N~rI 419 (762)
.|.+||..++.+..-...|. . +..+....|..+++++|| .|||++.. .+.|
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~--~-------------------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPE--G-------------------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred EEEEEECccCcEEeEEccCC--C-------------------------chhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 99999998765443222220 0 011235679999999997 59999976 9999
Q ss_pred EEEECCCCcEE-EEEcCCc
Q 004302 420 WIMDLASGEIK-EAVKGFS 437 (762)
Q Consensus 420 ~v~d~~~g~I~-ti~~G~g 437 (762)
-++|..++++. +|-.+.+
T Consensus 131 ~VvD~~~~kvv~ei~vp~~ 149 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDC 149 (352)
T ss_pred EEEECCCCcEEEEEeCCCC
Confidence 99999998753 3433443
No 130
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.23 E-value=4.9e-06 Score=71.55 Aligned_cols=80 Identities=9% Similarity=-0.088 Sum_probs=57.5
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcc
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFP 188 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~ 188 (762)
+.|.-||++||++| ....|.|++++++|+. +.++-|+.+. +.+.. +++++
T Consensus 1 ~~v~~f~~~~C~~C-------~~~~~~l~~l~~~~~~~~~~~~vd~~~------~~~~~----~~~~v------------ 51 (82)
T TIGR00411 1 VKIELFTSPTCPYC-------PAAKRVVEEVAKEMGDAVEVEYINVME------NPQKA----MEYGI------------ 51 (82)
T ss_pred CEEEEEECCCCcch-------HHHHHHHHHHHHHhcCceEEEEEeCcc------CHHHH----HHcCC------------
Confidence 35778999999865 9999999999999976 8888887764 33221 12221
Q ss_pred ccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 189 QMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 189 ~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
-++|++++ +|+. +..|..+.+++.+.|+++
T Consensus 52 ---~~vPt~~~--~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 52 ---MAVPAIVI--NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred ---ccCCEEEE--CCEE--EEecCCCHHHHHHHHHhh
Confidence 23567777 5553 677888888898888765
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=98.22 E-value=4.2e-06 Score=86.02 Aligned_cols=78 Identities=12% Similarity=-0.005 Sum_probs=62.2
Q ss_pred CEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcc
Q 004302 109 AFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFP 188 (762)
Q Consensus 109 K~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~ 188 (762)
..+|++|||+||+|| +...|.|.+|.++|++++|+-|+.+
T Consensus 18 g~~vl~f~a~w~~~C-------~~m~~vl~~l~~~~~~~~F~~V~~d--------------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEY-------EQLMDVCNALVEDFPSLEFYVVNLA--------------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcch-------HHHHHHHHHHHHHCCCcEEEEEccc---------------------------------
Confidence 457999999999876 9999999999999999888888521
Q ss_pred ccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 189 QMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 189 ~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
..-.++|||++=++|+++.+..|.- ..+|.+.+..+..
T Consensus 58 ~~V~~vPtfv~~~~g~~i~r~~G~~-~~~~~~~~~~~~~ 95 (204)
T PTZ00062 58 DANNEYGVFEFYQNSQLINSLEGCN-TSTLVSFIRGWAQ 95 (204)
T ss_pred cCcccceEEEEEECCEEEeeeeCCC-HHHHHHHHHHHcC
Confidence 1224688988888999999988754 5777777766543
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=98.22 E-value=3.1e-06 Score=96.48 Aligned_cols=88 Identities=9% Similarity=-0.045 Sum_probs=65.8
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
-.||+|+|+|||+||++| ++..|.++++++++++ +.|.-|+.+. ..
T Consensus 373 ~~~k~vlv~f~a~wC~~C-------~~~~p~~~~~a~~~~~~~~v~~~~id~~~------~~------------------ 421 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHC-------KNLEPVYNELGEKYKDNDSIIVAKMNGTA------NE------------------ 421 (477)
T ss_pred cCCCCEEEEEECCCCHHH-------HHHHHHHHHHHHHhccCCcEEEEEEECCC------Cc------------------
Confidence 469999999999999866 9999999999999875 6666666543 11
Q ss_pred CCCCcccccc---CceE-EEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 183 SNKNFPQMEN---GACY-LLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 183 D~~~~~~~~y---gv~t-~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.....+ ++|+ +++++.+++.....|..+.+.|.+.|++....
T Consensus 422 ----~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 422 ----TPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred ----cchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 011122 4564 67777777666789999999999888876654
No 133
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.19 E-value=5.3e-05 Score=84.29 Aligned_cols=116 Identities=12% Similarity=0.155 Sum_probs=78.1
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEE-cCCC------cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVF-DGNG------KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~-d~~G------~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
.|..|.||++.+ ++ |||++ ..+|+++ +.+| +...++-. +..+. ....+.|.++++++ ++.|||
T Consensus 70 ~l~~p~Gi~~~~-~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~---~~~~~--~~~~~~~~~l~~gp-DG~LYv 139 (367)
T TIGR02604 70 ELSMVTGLAVAV-GG-VYVAT--PPDILFLRDKDGDDKADGEREVLLSG---FGGQI--NNHHHSLNSLAWGP-DGWLYF 139 (367)
T ss_pred CCCCccceeEec-CC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEc---cCCCC--CcccccccCceECC-CCCEEE
Confidence 488999999984 56 99997 4578888 4433 32233311 11000 01245699999998 689999
Q ss_pred EeCCC-------------------CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 336 VDSEN-------------------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 336 ADt~N-------------------hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
++..+ ++|.+++++++.++.++ ..|+
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-----------------------------------~G~r 184 (367)
T TIGR02604 140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-----------------------------------HGFQ 184 (367)
T ss_pred ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-----------------------------------cCcC
Confidence 98732 35666666655554442 1267
Q ss_pred CcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 397 FPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
+|+|++++++|.+|++|..++....++
T Consensus 185 np~Gl~~d~~G~l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDNDDPPLCRVT 211 (367)
T ss_pred CCccceECCCCCEEEEccCCCceeEEc
Confidence 899999999999999998777665554
No 134
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.17 E-value=3.3e-06 Score=78.63 Aligned_cols=55 Identities=7% Similarity=-0.122 Sum_probs=40.8
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYIT 177 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it 177 (762)
+|+|+|+|||+||++| +..+|.++++.++|++ +.+..|+.+. +...++.+++++.
T Consensus 19 ~~~vvV~f~a~wC~~C-------~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------~~~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHC-------RAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------EENVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHH-------HHHhHHHHHHHHHHHhcCCceEEEEEeccc--------hhhHHHHHhCCCC
Confidence 4899999999999866 9999999999998753 7776666542 1234555566653
No 135
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.16 E-value=7e-06 Score=71.82 Aligned_cols=47 Identities=4% Similarity=-0.055 Sum_probs=40.9
Q ss_pred ccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcC
Q 004302 102 HFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHG 155 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~ 155 (762)
.+..+++++++++||+.||++| +..+|.|.+++++|+. +.++.++..
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C-------~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPC-------RAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHH-------HhhchhHHHHHHHhcCCcEEEEEECC
Confidence 3344559999999999999866 9999999999999996 999999885
No 136
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.15 E-value=2.3e-05 Score=91.56 Aligned_cols=169 Identities=18% Similarity=0.141 Sum_probs=123.8
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS-- 338 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt-- 338 (762)
+..|.+|.|||||-...++|-+|+.+.+|-+-.++|++..+.= ..-|.+|.+|++|+-.++||-+|+
T Consensus 1064 n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf-----------~tdLVNPR~iv~D~~rgnLYwtDWnR 1132 (1289)
T KOG1214|consen 1064 NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF-----------YTDLVNPRAIVVDPIRGNLYWTDWNR 1132 (1289)
T ss_pred cccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE-----------eecccCcceEEeecccCceeeccccc
Confidence 4569999999999889999999999999999999998776542 124788999999999999999997
Q ss_pred CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCC
Q 004302 339 ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFE 417 (762)
Q Consensus 339 ~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~ 417 (762)
+|-.|-..++++..-..+.- .+ +--|-||.+++. ..|--+|++||
T Consensus 1133 enPkIets~mDG~NrRilin----------------~D------------------igLPNGLtfdpfs~~LCWvDAGt~ 1178 (1289)
T KOG1214|consen 1133 ENPKIETSSMDGENRRILIN----------------TD------------------IGLPNGLTFDPFSKLLCWVDAGTK 1178 (1289)
T ss_pred cCCcceeeccCCccceEEee----------------cc------------------cCCCCCceeCcccceeeEEecCCc
Confidence 35567766665433222221 11 334999999987 56777899999
Q ss_pred EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 418 TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 418 rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
|+--+.+++---++++. .-..| .++.....++|.+|=.
T Consensus 1179 rleC~~p~g~gRR~i~~-------------------------------------~LqYP-----F~itsy~~~fY~TDWk 1216 (1289)
T KOG1214|consen 1179 RLECTLPDGTGRRVIQN-------------------------------------NLQYP-----FSITSYADHFYHTDWK 1216 (1289)
T ss_pred ceeEecCCCCcchhhhh-------------------------------------cccCc-----eeeeeccccceeeccc
Confidence 99776664311111110 00123 4566677789999999
Q ss_pred CCEEEEEECCCCcEEEEee
Q 004302 498 GQRIMRLNRESGVCSNFQF 516 (762)
Q Consensus 498 NhRIrkidl~~~~~sti~~ 516 (762)
-++|..++.-++..+.+.+
T Consensus 1217 ~n~vvsv~~~~~~~td~~~ 1235 (1289)
T KOG1214|consen 1217 RNGVVSVNKHSGQFTDEYL 1235 (1289)
T ss_pred cCceEEeeccccccccccc
Confidence 9999999998888776543
No 137
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.13 E-value=8.4e-06 Score=93.08 Aligned_cols=90 Identities=10% Similarity=-0.018 Sum_probs=60.5
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHH-HhcCCCccee
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEML-MKEYITFPIL 181 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~-~k~~itfPVl 181 (762)
+.++++|||+|||+||++| +..+|.++++.++|++ +.|+.|+.+. +.. .+. ++++|.
T Consensus 368 ~~~~k~VLV~FyApWC~~C-------k~m~P~~eelA~~~~~~~v~~~kVdvD~------~~~---~~~~~~~~I~---- 427 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFC-------QAMEASYLELAEKLAGSGVKVAKFRADG------DQK---EFAKQELQLG---- 427 (463)
T ss_pred hcCCCeEEEEEECCCChHH-------HHHHHHHHHHHHHhccCCcEEEEEECCC------Ccc---HHHHHHcCCC----
Confidence 3479999999999999866 9999999999999975 8888898875 111 122 344442
Q ss_pred eCCCCccccccCceEE-EEcCCC-CEEEEecCCcCHHHHHHHHHHH
Q 004302 182 LSNKNFPQMENGACYL-LSKDFG-NARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 182 ~D~~~~~~~~ygv~t~-lId~~G-~iv~~~~G~~~~~~L~~~l~~l 225 (762)
++||+ +|.+.. +.+.+..|.-+.+.|.+.|+.|
T Consensus 428 -----------~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 428 -----------SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred -----------ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 23442 333222 3333444678888888777654
No 138
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.00012 Score=79.76 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=104.3
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
..|-.-++..+.||.+|-.+++|.++++. |+... +-.. + ..+.++.++. ++.|.+++.+-.++..
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p-~-----------~~~~~~~~d~-~g~Lv~~~~g~~~~~~ 92 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSP-G-----------GFSSGALIDA-GGRLIACEHGVRLLDP 92 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECC-C-----------CcccceeecC-CCeEEEEccccEEEec
Confidence 33434466788899999999999999995 64433 2221 1 2277888884 8999999966544443
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCC---------
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSF--------- 416 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN--------- 416 (762)
+ .++.++.++-.. ....++.|-++.++++|.+|+.|.++
T Consensus 93 -~-~~~~~t~~~~~~------------------------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~ 140 (307)
T COG3386 93 -D-TGGKITLLAEPE------------------------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEER 140 (307)
T ss_pred -c-CCceeEEecccc------------------------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccC
Confidence 2 244445554221 12347889999999999999999883
Q ss_pred --CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE
Q 004302 417 --ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC 494 (762)
Q Consensus 417 --~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA 494 (762)
.+|+++++.++. .+++.+. ...+.|.++++++..+|++
T Consensus 141 ~~G~lyr~~p~g~~-~~l~~~~---------------------------------------~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 141 PTGSLYRVDPDGGV-VRLLDDD---------------------------------------LTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CcceEEEEcCCCCE-EEeecCc---------------------------------------EEecCceEECCCCCEEEEE
Confidence 246666664332 2332110 1112357888888899999
Q ss_pred ECCCCEEEEEECC
Q 004302 495 DIVGQRIMRLNRE 507 (762)
Q Consensus 495 Dt~NhRIrkidl~ 507 (762)
||..++|.+++.+
T Consensus 181 DT~~~~i~r~~~d 193 (307)
T COG3386 181 DTPANRIHRYDLD 193 (307)
T ss_pred eCCCCeEEEEecC
Confidence 9999999999887
No 139
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.11 E-value=3.7e-05 Score=84.68 Aligned_cols=192 Identities=17% Similarity=0.113 Sum_probs=114.7
Q ss_pred ccCCcceEEEccCCC--EEEEEeCCCcEEEEEcC--CCcEEEEec--CC--CCCCC--CcccccccCCcceEEEecCCCe
Q 004302 263 LLHFPGCISADESGN--RLFLSDSNHHRIIVFDG--NGKILDCIG--SC--PGFED--GEFESSKLMRPAASFYHKDDDC 332 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g--~LYVADs~nhrI~v~d~--~G~i~~~iG--sG--~G~~D--G~~~~a~fn~P~GIavd~~~g~ 332 (762)
.+..|..+.+|+.++ .+-|+| .+|+++.. .|.+...-. +. .+-.+ .......--+|-||+++.++++
T Consensus 52 ~~~g~E~~~fd~~~~gp~~~v~d---g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggd 128 (376)
T KOG1520|consen 52 HLTGPESLLFDPQGGGPYTGVVD---GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGD 128 (376)
T ss_pred ccCChhhheecccCCCceEEEEC---CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCe
Confidence 466777788876553 333443 56766665 455444433 11 11111 1222345568999999987779
Q ss_pred EEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE
Q 004302 333 LYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII 412 (762)
Q Consensus 333 LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA 412 (762)
|||||..=+ +.+|+++++..+.++... ..+.+...-++.++++|.||.+
T Consensus 129 L~VaDAYlG-L~~V~p~g~~a~~l~~~~------------------------------~G~~~kf~N~ldI~~~g~vyFT 177 (376)
T KOG1520|consen 129 LYVADAYLG-LLKVGPEGGLAELLADEA------------------------------EGKPFKFLNDLDIDPEGVVYFT 177 (376)
T ss_pred EEEEeccee-eEEECCCCCcceeccccc------------------------------cCeeeeecCceeEcCCCeEEEe
Confidence 999998544 888998888755554221 1134667778999999999999
Q ss_pred ECCCCEEEEEECCCCcEEEEEcCC--ceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCE
Q 004302 413 NRSFETLWIMDLASGEIKEAVKGF--SKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNH 490 (762)
Q Consensus 413 D~gN~rI~v~d~~~g~I~ti~~G~--g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~ 490 (762)
|+... |+. ...+--+++|. |+.+...-. .|. .--+....+.+.|.+++.++..
T Consensus 178 DSSsk----~~~-rd~~~a~l~g~~~GRl~~YD~~---tK~-----------------~~VLld~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 178 DSSSK----YDR-RDFVFAALEGDPTGRLFRYDPS---TKV-----------------TKVLLDGLYFPNGLALSPDGSF 232 (376)
T ss_pred ccccc----cch-hheEEeeecCCCccceEEecCc---ccc-----------------hhhhhhcccccccccCCCCCCE
Confidence 98652 111 11112223332 221111000 000 0001112234457888889999
Q ss_pred EEEEECCCCEEEEEECCCCcEEE
Q 004302 491 ILLCDIVGQRIMRLNRESGVCSN 513 (762)
Q Consensus 491 LYVADt~NhRIrkidl~~~~~st 513 (762)
+.+|.+...||+|+-+++....+
T Consensus 233 vl~~Et~~~ri~rywi~g~k~gt 255 (376)
T KOG1520|consen 233 VLVAETTTARIKRYWIKGPKAGT 255 (376)
T ss_pred EEEEeeccceeeeeEecCCccCc
Confidence 99999999999999999987754
No 140
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.9e-05 Score=82.12 Aligned_cols=97 Identities=11% Similarity=0.004 Sum_probs=74.7
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
|+.--||.|+|+|.|+||+|| ..--|.+..|..+|++.+|+=|++++ -+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPC-------k~IaP~Fs~lankYp~aVFlkVdVd~----------c~-------------- 64 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPC-------KRIAPIFSDLANKYPGAVFLKVDVDE----------CR-------------- 64 (288)
T ss_pred hhccCceEEEEEEEecccchH-------HhhhhHHHHhhhhCcccEEEEEeHHH----------hh--------------
Confidence 344458999999999999977 99999999999999998888888764 01
Q ss_pred CCCCccccccCc---eEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhccCCCC
Q 004302 183 SNKNFPQMENGA---CYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQENSSS 235 (762)
Q Consensus 183 D~~~~~~~~ygv---~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s~~ 235 (762)
.....||| |||++=++|.-+.+..|. +...|+..+++++...++.+..
T Consensus 65 ----~taa~~gV~amPTFiff~ng~kid~~qGA-d~~gLe~kv~~~~stsaa~~~~ 115 (288)
T KOG0908|consen 65 ----GTAATNGVNAMPTFIFFRNGVKIDQIQGA-DASGLEEKVAKYASTSAASSGT 115 (288)
T ss_pred ----chhhhcCcccCceEEEEecCeEeeeecCC-CHHHHHHHHHHHhccCcccccC
Confidence 11223444 488888899888887774 5577888888888876665533
No 141
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.08 E-value=1.1e-05 Score=72.41 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.|+++++.||++||++| ....|.|+++.++|++ +.|+-|+.++ -..+++.+++.-
T Consensus 11 ~~~~~~~~f~~~~~~~~-------~~~~~~~~~vA~~~~~~v~f~~vd~~~----------~~~~~~~~~i~~------- 66 (103)
T cd02982 11 SGKPLLVLFYNKDDSES-------EELRERFKEVAKKFKGKLLFVVVDADD----------FGRHLEYFGLKE------- 66 (103)
T ss_pred cCCCEEEEEEcCChhhH-------HHHHHHHHHHHHHhCCeEEEEEEchHh----------hHHHHHHcCCCh-------
Confidence 48999999999999866 9999999999999988 9999987653 234566666531
Q ss_pred CccccccCceEEEEcCC--CCEEEEecCCcCHHHHHHHHHHH
Q 004302 186 NFPQMENGACYLLSKDF--GNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~--G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
.++|++++-+. |+......|..+.+.|.+.|+++
T Consensus 67 ------~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 67 ------EDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred ------hhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 13344333333 54444445556888888888764
No 142
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.06 E-value=9.3e-06 Score=84.59 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=105.3
Q ss_pred cchhhHhhcCCCCCCCceeecccCCCc-cccCCCC--CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEE
Q 004302 74 DTLSFIESTFNEFQGPHHLWFNIVEDN-IHFFKRG--GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQV 149 (762)
Q Consensus 74 ~~~~~i~stl~~l~g~~~~w~n~~g~~-v~Lsd~r--GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~V 149 (762)
-.+++.+.+...-++|+..++..+|+. .++.|+. ++|+||||=+--|||= +..++.+++|.++|++ ..+
T Consensus 65 ~~ldl~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF-------~~~l~~f~~l~~~f~d~adF 137 (237)
T PF00837_consen 65 MWLDLFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPF-------MAKLDAFKRLVEDFSDVADF 137 (237)
T ss_pred HHHHcccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHH-------HHHHHHHHHHHHHhhhhhhe
Confidence 445667778888899999999999999 9999984 6999999987777654 9999999999999998 556
Q ss_pred EEEEcCCC--------------ccCcCC---HHHHHHHHHhcCCCcceeeCCC-CccccccCce---EEEEcCCCCEEEE
Q 004302 150 IGFLHGCS--------------TISAVD---QTRLVEMLMKEYITFPILLSNK-NFPQMENGAC---YLLSKDFGNARVF 208 (762)
Q Consensus 150 vgV~~~~~--------------~~~e~~---~~~v~~f~~k~~itfPVl~D~~-~~~~~~ygv~---t~lId~~G~iv~~ 208 (762)
+-|-+.+. +..+++ .-.+.+.++++...+||++|.- +....+||+- .|+|. +|++++.
T Consensus 138 l~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~-~gkv~Y~ 216 (237)
T PF00837_consen 138 LIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQ-DGKVVYK 216 (237)
T ss_pred ehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEE-CCEEEEe
Confidence 66544331 111222 2234555666668899999974 4566778864 46664 9998876
Q ss_pred e-cCCc--CHHHHHHHHHHH
Q 004302 209 H-ENSL--DIGMLNKAVEEL 225 (762)
Q Consensus 209 ~-~G~~--~~~~L~~~l~~l 225 (762)
. .|+. ..+++++.|+++
T Consensus 217 Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 217 GGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCCCCcCCHHHHHHHHHhc
Confidence 4 5543 467888888764
No 143
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.03 E-value=2.7e-05 Score=74.06 Aligned_cols=83 Identities=6% Similarity=-0.187 Sum_probs=48.3
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHH-H--HHHHHH-CCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCc
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEK-V--KSIQQS-FPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITF 178 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~-L--~~L~~~-y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itf 178 (762)
.+.-+||+|+|+|+|.||++| +..-+. + .++.+. ++++.+|-|+.++ ..+..+.+.+....
T Consensus 10 ~Ak~~~KpVll~f~a~WC~~C-------k~me~~~f~~~~V~~~l~~~fv~VkvD~~~------~~~~~~~~~~~~~~-- 74 (124)
T cd02955 10 KARREDKPIFLSIGYSTCHWC-------HVMEHESFEDEEVAAILNENFVPIKVDREE------RPDVDKIYMNAAQA-- 74 (124)
T ss_pred HHHHcCCeEEEEEccCCCHhH-------HHHHHHccCCHHHHHHHhCCEEEEEEeCCc------CcHHHHHHHHHHHH--
Confidence 344579999999999999866 433231 1 234443 3456666666543 22222333332111
Q ss_pred ceeeCCCCccccccCce-EEEEcCCCCEEEEe
Q 004302 179 PILLSNKNFPQMENGAC-YLLSKDFGNARVFH 209 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv~-t~lId~~G~iv~~~ 209 (762)
.....|.| +++++++|+++...
T Consensus 75 ---------~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 75 ---------MTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred ---------hcCCCCCCEEEEECCCCCEEeee
Confidence 01234677 58999999999764
No 144
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.01 E-value=0.00024 Score=75.28 Aligned_cols=177 Identities=16% Similarity=0.089 Sum_probs=117.6
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEe-c-----------------------C-C-CCCCCC-c----
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCI-G-----------------------S-C-PGFEDG-E---- 312 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~i-G-----------------------s-G-~G~~DG-~---- 312 (762)
.+|++|.++| ++..+|.|+++ -|.++|. ++.+.+.- . . | .|.-|- .
T Consensus 104 a~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 104 ASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 5899999997 78899999998 9999998 56555421 0 0 0 010010 0
Q ss_pred -ccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCC
Q 004302 313 -FESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLD 391 (762)
Q Consensus 313 -~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~ 391 (762)
+..-+=-.|.||++.+ +|.+|++.-..+.|-++|+..+.-..+. .. .++
T Consensus 182 vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p-~P----------------~~~------------ 231 (353)
T COG4257 182 VFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVP-QP----------------NAL------------ 231 (353)
T ss_pred eeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceec-CC----------------Ccc------------
Confidence 0112334578899998 7889999888888999987666433331 11 010
Q ss_pred CCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCccc
Q 004302 392 PQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS 471 (762)
Q Consensus 392 ~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~ 471 (762)
-+.-+.|-.|+-|.++|++.++.++.+||+++......-.. .
T Consensus 232 ---~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLP-----------------------------------g 273 (353)
T COG4257 232 ---KAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLP-----------------------------------G 273 (353)
T ss_pred ---cccccccccCccCcEEEeccCCceeeEeCcccccceeeeCC-----------------------------------C
Confidence 11234567788899999999999999999986543322100 0
Q ss_pred ccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEEEe
Q 004302 472 LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 472 ~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~sti~ 515 (762)
....|| +-.....+.++..|...+.|.+||.++...+.+-
T Consensus 274 s~arpy----s~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 274 SKARPY----SMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CCCCcc----eeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 112232 2223467899999999999999999998877653
No 145
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.01 E-value=0.00018 Score=77.35 Aligned_cols=132 Identities=21% Similarity=0.231 Sum_probs=94.4
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe-------------CC
Q 004302 273 DESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD-------------SE 339 (762)
Q Consensus 273 D~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD-------------t~ 339 (762)
...++.||.+|..+.||-+||.+-..+..-|. |.|- ...+ =..|.+|.-- +++|||+= .+
T Consensus 148 ~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~---F~DP-~iPa-gyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G 220 (336)
T TIGR03118 148 TGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS---FIDP-ALPA-GYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAG 220 (336)
T ss_pred cCCCceEEEeccCCCceEEecCccccccCCCC---ccCC-CCCC-CCCCcceEEE--CCeEEEEEEecCCcccccccCCC
Confidence 34468999999999999999987665544343 2221 0111 1458889764 79999963 44
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC------CCcEEEEE
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE------DDNLLIIN 413 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~------dG~LYVAD 413 (762)
++-|-+||+.+.++..++.. ..||.||||++.| .|.|+|.+
T Consensus 221 ~G~VdvFd~~G~l~~r~as~---------------------------------g~LNaPWG~a~APa~FG~~sg~lLVGN 267 (336)
T TIGR03118 221 LGYVNVFTLNGQLLRRVASS---------------------------------GRLNAPWGLAIAPESFGSLSGALLVGN 267 (336)
T ss_pred cceEEEEcCCCcEEEEeccC---------------------------------CcccCCceeeeChhhhCCCCCCeEEee
Confidence 56788888888888777422 2389999999974 47999999
Q ss_pred CCCCEEEEEECCCCc-EEEEEcCCceeeEEec
Q 004302 414 RSFETLWIMDLASGE-IKEAVKGFSKVLEICG 444 (762)
Q Consensus 414 ~gN~rI~v~d~~~g~-I~ti~~G~g~~~~~~G 444 (762)
.+..+|-.||+.+|. +.++...+|+++.+.|
T Consensus 268 FGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 268 FGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred cCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 999999999997654 5555555666655544
No 146
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.99 E-value=6.9e-05 Score=78.42 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=94.5
Q ss_pred CCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---C--eEEEEEEcCCCccCcC
Q 004302 88 GPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---Q--LQVIGFLHGCSTISAV 162 (762)
Q Consensus 88 g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~--v~VvgV~~~~~~~~e~ 162 (762)
|..|+++|.+|+.++-.||+|||+||+|=.|-||+- | -.|+..|.+.-.+-. + ++=|.|.+|. ..+
T Consensus 119 GGpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDI----C--PdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP---eRD 189 (280)
T KOG2792|consen 119 GGPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDI----C--PDELEKMSAVVDEIEAKPGLPPVPLFISVDP---ERD 189 (280)
T ss_pred CCceEEEecCCCeecccccccceEEEEecccCCCCc----C--hHHHHHHHHHHHHHhccCCCCccceEEEeCc---ccC
Confidence 344999999999999999999999999999999974 8 888888877555332 2 3346677764 335
Q ss_pred CHHHHHHHHHhcC-----CC------------cceeeCCC-CccccccCce----EEEEcCCCCEEEEecCCcCHHHHHH
Q 004302 163 DQTRLVEMLMKEY-----IT------------FPILLSNK-NFPQMENGAC----YLLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 163 ~~~~v~~f~~k~~-----it------------fPVl~D~~-~~~~~~ygv~----t~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
+.+.+.+|++++. +| |=|+.... .....-|-|- .||||++|+.+.+.--.-+.+++..
T Consensus 190 ~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~ 269 (280)
T KOG2792|consen 190 SVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELAD 269 (280)
T ss_pred CHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHH
Confidence 7888899988863 22 45555542 1112234332 5999999999998877777788777
Q ss_pred HHHHHHH
Q 004302 221 AVEELIM 227 (762)
Q Consensus 221 ~l~~ll~ 227 (762)
.|.+-+.
T Consensus 270 ~I~~~v~ 276 (280)
T KOG2792|consen 270 SILKHVA 276 (280)
T ss_pred HHHHHHH
Confidence 7665443
No 147
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.001 Score=72.59 Aligned_cols=175 Identities=16% Similarity=0.247 Sum_probs=114.0
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
+++..-++|.+..|++.|-+..||..|+. +|++...--.. +| ..|.-|+++|++...|+.-.-|++
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG-----------AGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC-----------CCcceEEEcCCCcEEEEEeccCCE
Confidence 35667788888899999999999999998 56554322111 22 339999999999999999999999
Q ss_pred EEEEeCCC--CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEE
Q 004302 343 IRRADMGR--RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETL 419 (762)
Q Consensus 343 IRkid~~~--g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI 419 (762)
|-++..+. +.+..+.-.- ... .++ ..-++-..|.+++|| .||++|++-+.|
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~--tlP-----------~dF-------------~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTID--TLP-----------EDF-------------TGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred EEEEEEcCCCceEEEeeeec--cCc-----------ccc-------------CCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 98887655 5555542111 000 000 112355678888986 599999999988
Q ss_pred EEE--ECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 420 WIM--DLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 420 ~v~--d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
+.| |..+|.+..+- ...+.|+ .| +...++..++.||+|...
T Consensus 269 ~~f~V~~~~g~L~~~~-----~~~teg~-----------------------------~P---R~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 269 AVFSVDPDGGKLELVG-----ITPTEGQ-----------------------------FP---RDFNINPSGRFLIAANQK 311 (346)
T ss_pred EEEEEcCCCCEEEEEE-----EeccCCc-----------------------------CC---ccceeCCCCCEEEEEccC
Confidence 755 44555544321 0001111 12 334556678889999766
Q ss_pred CC--EEEEEECCCCcEEEE
Q 004302 498 GQ--RIMRLNRESGVCSNF 514 (762)
Q Consensus 498 Nh--RIrkidl~~~~~sti 514 (762)
.+ .|..+|.+||.++.+
T Consensus 312 sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 312 SDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCcEEEEEEcCCCceEEec
Confidence 55 555666778887764
No 148
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.96 E-value=0.00089 Score=74.39 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCcceEEEccCCCEEEEEeC---------CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEE
Q 004302 265 HFPGCISADESGNRLFLSDS---------NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs---------~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LY 334 (762)
..|.++ +++++..|||+.+ ..+.|.++|. +++++..+-.++.- .-.....|..+++++++..||
T Consensus 47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-----~~~~~~~~~~~~ls~dgk~l~ 120 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-----RFLVGTYPWMTSLTPDNKTLL 120 (352)
T ss_pred CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-----hhhccCccceEEECCCCCEEE
Confidence 478887 9988999999999 9999999998 78888766553110 011346788999999889999
Q ss_pred EEeCC-CCeEEEEeCCCCEEEEEeec
Q 004302 335 IVDSE-NHAIRRADMGRRVLETVYPT 359 (762)
Q Consensus 335 VADt~-NhrIRkid~~~g~I~TiaG~ 359 (762)
|++.. .+.|-++|+.++.+..-...
T Consensus 121 V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 121 FYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred EecCCCCCEEEEEECCCCcEEEEEeC
Confidence 99966 89999999998866543333
No 149
>PLN02309 5'-adenylylsulfate reductase
Probab=97.95 E-value=3.1e-05 Score=88.41 Aligned_cols=89 Identities=10% Similarity=-0.037 Sum_probs=60.8
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHH-hcCCCcceee
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLM-KEYITFPILL 182 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~-k~~itfPVl~ 182 (762)
-+||++||+|||+||++| ++..|.+.++.++|.+ ++|..|+.+. ... .+.+ +++|.
T Consensus 363 ~~~k~vlV~FyApWC~~C-------q~m~p~~e~LA~~~~~~~V~f~kVD~d~-----~~~----~la~~~~~I~----- 421 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFC-------QAMEASYEELAEKLAGSGVKVAKFRADG-----DQK----EFAKQELQLG----- 421 (457)
T ss_pred cCCCeEEEEEECCCChHH-------HHHHHHHHHHHHHhccCCeEEEEEECCC-----cch----HHHHhhCCCc-----
Confidence 379999999999999866 9999999999999975 9999988773 011 2232 24442
Q ss_pred CCCCccccccCceE-EEEcC-CCCEEEEecCCcCHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACY-LLSKD-FGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~-~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+.|| +++.+ ..+.+.+..|.-+.+.|.+.|+.+
T Consensus 422 ----------~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 ----------SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ----------eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 2333 23322 223444445667888888888765
No 150
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.93 E-value=0.00014 Score=85.31 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=111.3
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
|.||.+|=.+.-||-+|...|.|.+-.++| +-.+++-. .|.+|.|||+|....++|-+|+.+.+|-+
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~------------~L~SPEGiAVDh~~Rn~ywtDS~lD~Iev 1094 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS------------GLISPEGIAVDHIRRNMYWTDSVLDKIEV 1094 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceeecc------------cCCCccceeeeeccceeeeeccccchhhe
Confidence 456777766788999999999999998876 44455533 47789999999999999999999999999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECC--CCEEEEE
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRS--FETLWIM 422 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~g--N~rI~v~ 422 (762)
..+++.+-..+.-++ |-+|++|++|+ .|+||-+|.. |-.|-..
T Consensus 1095 A~LdG~~rkvLf~td----------------------------------LVNPR~iv~D~~rgnLYwtDWnRenPkIets 1140 (1289)
T KOG1214|consen 1095 ALLDGSERKVLFYTD----------------------------------LVNPRAIVVDPIRGNLYWTDWNRENPKIETS 1140 (1289)
T ss_pred eecCCceeeEEEeec----------------------------------ccCcceEEeecccCceeeccccccCCcceee
Confidence 888766655554221 56899999997 5999999953 3344444
Q ss_pred ECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEE
Q 004302 423 DLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIM 502 (762)
Q Consensus 423 d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIr 502 (762)
++++.. .+|+. .+ + -++|+ |.-+.++...|--+|.+|||+-
T Consensus 1141 ~mDG~N-rRili-------------------n~---------------D-igLPN---GLtfdpfs~~LCWvDAGt~rle 1181 (1289)
T KOG1214|consen 1141 SMDGEN-RRILI-------------------NT---------------D-IGLPN---GLTFDPFSKLLCWVDAGTKRLE 1181 (1289)
T ss_pred ccCCcc-ceEEe-------------------ec---------------c-cCCCC---CceeCcccceeeEEecCCccee
Confidence 433211 12210 00 0 03342 2444455667888999999999
Q ss_pred EEECCCC
Q 004302 503 RLNRESG 509 (762)
Q Consensus 503 kidl~~~ 509 (762)
.+..++.
T Consensus 1182 C~~p~g~ 1188 (1289)
T KOG1214|consen 1182 CTLPDGT 1188 (1289)
T ss_pred EecCCCC
Confidence 9988764
No 151
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.88 E-value=3.7e-05 Score=71.50 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=69.1
Q ss_pred ceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCcc-Cc-CCHH
Q 004302 90 HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTI-SA-VDQT 165 (762)
Q Consensus 90 ~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~-~e-~~~~ 165 (762)
+++..+.+|++++|++||||++||-==|+-|+-- . .+..|++|+++|++ |+|||+-+.. |. .| .+.+
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t-------~-qy~~L~~L~~ky~~~gl~ILaFPcnq-Fg~QEp~~~~ 73 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYT-------K-QYKQLNELYEKYKDKGLEILAFPCNQ-FGNQEPGSNE 73 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTH-------H-HHHHHHHHHHHHGGGTEEEEEEEBST-TTTTTSSCHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCc-------c-ccHHHHHHHHHHhcCCeEEEeeehHH-hccccCCCHH
Confidence 3566788899999999999999998889999742 4 88999999999984 9999999876 53 22 4677
Q ss_pred HHHHHHHh-cCCCcceee
Q 004302 166 RLVEMLMK-EYITFPILL 182 (762)
Q Consensus 166 ~v~~f~~k-~~itfPVl~ 182 (762)
++++|... ++.+|||.-
T Consensus 74 ei~~~~~~~~~~~F~vf~ 91 (108)
T PF00255_consen 74 EIKEFCKEKFGVTFPVFE 91 (108)
T ss_dssp HHHHHHCHCHT-SSEEBS
T ss_pred HHHHHHHhccCCcccceE
Confidence 89999887 799999864
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.86 E-value=2.1e-05 Score=68.07 Aligned_cols=72 Identities=6% Similarity=-0.097 Sum_probs=49.3
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcccc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQM 190 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~ 190 (762)
.|.|||+||++| ....|.++++.++++. +.|+-|+ + .+. +.+++
T Consensus 2 ~i~~~a~~C~~C-------~~~~~~~~~~~~e~~~~~~~~~v~--~-------~~~----a~~~~--------------- 46 (76)
T TIGR00412 2 KIQIYGTGCANC-------QMTEKNVKKAVEELGIDAEFEKVT--D-------MNE----ILEAG--------------- 46 (76)
T ss_pred EEEEECCCCcCH-------HHHHHHHHHHHHHcCCCeEEEEeC--C-------HHH----HHHcC---------------
Confidence 488999999866 9999999999999986 7776664 2 122 12222
Q ss_pred ccCceEEEEcCCCCEEEEecCC-cCHHHHHHHH
Q 004302 191 ENGACYLLSKDFGNARVFHENS-LDIGMLNKAV 222 (762)
Q Consensus 191 ~ygv~t~lId~~G~iv~~~~G~-~~~~~L~~~l 222 (762)
-+++|++++ +|+++ ..|. .+.++|.+.+
T Consensus 47 v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 47 VTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred CCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 246788888 78877 5554 3435565544
No 153
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.86 E-value=2.9e-05 Score=87.53 Aligned_cols=89 Identities=8% Similarity=-0.075 Sum_probs=65.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
++++++|+|||+||++| ++.+|.+.++++.+.+ +.++-|+.+. . .+..+++++.
T Consensus 17 ~~~~~~v~f~a~wC~~c-------~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------~----~~l~~~~~i~----- 74 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHC-------KSLAPEYEKAADELKKKGPPIKLAKVDATE------E----KDLAQKYGVS----- 74 (462)
T ss_pred cCCCEEEEEECCCCHHH-------HhhhHHHHHHHHHHhhcCCceEEEEEECCC------c----HHHHHhCCCc-----
Confidence 57899999999999866 9999999998887652 7888887764 2 2334444442
Q ss_pred CCCCccccccCceEEEEcCCCCE-EEEecCCcCHHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNA-RVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~i-v~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+.|++++-++|+. +....|..+.+.|.+.+.+++.
T Consensus 75 ----------~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 75 ----------GYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred ----------cccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 3455555567887 7778899898888888877654
No 154
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.83 E-value=0.00029 Score=74.67 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=72.8
Q ss_pred ceEEEccCCCEEEEEeCCCc-EEEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 268 GCISADESGNRLFLSDSNHH-RIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nh-rI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
-|||.|+.++++||+--.+- +|+.++. .+.-+...-. .+.. .....+..|++++++|..+.|||-...+++|.
T Consensus 121 EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~ 196 (248)
T PF06977_consen 121 EGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QDLD---DDKLFVRDLSGLSYDPRTGHLLILSDESRLLL 196 (248)
T ss_dssp EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HHHH----HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc-cccc---cccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence 68999999999998854433 5666665 2211111111 0000 01234557999999999999999999999999
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
.+|.++..+..+.=.. | ..|+ ...+..|.|||+|++|+|||+...| +.++|
T Consensus 197 ~~d~~G~~~~~~~L~~-----g---------~~gl------------~~~~~QpEGIa~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 197 ELDRQGRVVSSLSLDR-----G---------FHGL------------SKDIPQPEGIAFDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp EE-TT--EEEEEE-ST-----T---------GGG-------------SS---SEEEEEE-TT--EEEEETTT-EEEEE
T ss_pred EECCCCCEEEEEEeCC-----c---------ccCc------------ccccCCccEEEECCCCCEEEEcCCc-eEEEe
Confidence 9998777666652111 1 0122 2347899999999999999999855 77776
No 155
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.79 E-value=0.00011 Score=75.78 Aligned_cols=85 Identities=1% Similarity=-0.245 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
.++++.++|+.|||+||++| ....|.++++..+++++.+.-|+.+. ..+ ..+++++
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C-------~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~----~~~~~~V------- 184 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYC-------PYAVLMAHKFALANDKILGEMIEANE------NPD----LAEKYGV------- 184 (215)
T ss_pred HhcCCCcEEEEEECCCCCCc-------HHHHHHHHHHHHhcCceEEEEEeCCC------CHH----HHHHhCC-------
Confidence 34566666777999999865 88889999999998777776666554 222 2223322
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
.++|+++|+++|+. +.|....+++.+.|.
T Consensus 185 --------~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~ 213 (215)
T TIGR02187 185 --------MSVPKIVINKGVEE---FVGAYPEEQFLEYIL 213 (215)
T ss_pred --------ccCCEEEEecCCEE---EECCCCHHHHHHHHH
Confidence 24678888887763 778888777777665
No 156
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.79 E-value=0.00016 Score=67.00 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=61.6
Q ss_pred ccCCCCCCEEEEEEeccCCCCccCCCCcchhhc------HHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcC
Q 004302 102 HFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTF------EKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEY 175 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~em------P~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~ 175 (762)
..+.-++|+++|+|++.||++| .... |.+.++-++ .+.++.++... ....++...++
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c-------~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~--------~e~~~~~~~~~ 73 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDS-------QVLNRDLWSNESVKEFIRE--NFIFWQCDIDS--------SEGQRFLQSYK 73 (114)
T ss_pred HHHHhhCceEEEEEecCCcchH-------HHHHHHHcCCHHHHHHHHh--CEEEEEecCCC--------ccHHHHHHHhC
Confidence 3344579999999999999866 2221 333333222 35555554432 12344555544
Q ss_pred CCcceeeCCCCccccccCce-EEEEcC-CCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 176 ITFPILLSNKNFPQMENGAC-YLLSKD-FGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 176 itfPVl~D~~~~~~~~ygv~-t~lId~-~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+ .+.| .++||+ +|+++.+..|..+.+++...|++.+.
T Consensus 74 ~---------------~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 74 V---------------DKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred c---------------cCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 2 2456 488899 89999999999999999988887654
No 157
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.64 E-value=0.00025 Score=78.31 Aligned_cols=137 Identities=17% Similarity=0.201 Sum_probs=83.2
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
-+|.||+.+..+|+|||||..- -+++++.+|......-. ..+| ..|.-.-++.+++ +|.+|++|+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~---~~~G----~~~kf~N~ldI~~-~g~vyFTDSSs---- 181 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD---EAEG----KPFKFLNDLDIDP-EGVVYFTDSSS---- 181 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc---cccC----eeeeecCceeEcC-CCeEEEecccc----
Confidence 3799999998888999999754 58888987766443321 1222 3455567899997 89999999754
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~rI~v~d 423 (762)
+++...-..-.+.|. ..|. .+. ... ..+...---..|++|-||++++| ..+.++++...||.++=
T Consensus 182 k~~~rd~~~a~l~g~----~~GR-----l~~-YD~----~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 182 KYDRRDFVFAALEGD----PTGR-----LFR-YDP----STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred ccchhheEEeeecCC----Cccc-----eEE-ecC----cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 121111111111111 0110 000 000 00000011234889999999998 56888999999999887
Q ss_pred CCCCc
Q 004302 424 LASGE 428 (762)
Q Consensus 424 ~~~g~ 428 (762)
..+.+
T Consensus 248 i~g~k 252 (376)
T KOG1520|consen 248 IKGPK 252 (376)
T ss_pred ecCCc
Confidence 76544
No 158
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0003 Score=69.96 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=81.6
Q ss_pred eecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHH
Q 004302 92 LWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVE 169 (762)
Q Consensus 92 ~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~ 169 (762)
..+|..-+.++|++|+||+||+-||.-.=. -=| --|+-.+...+.+|.. -+|||+++|. .-...+
T Consensus 17 aVVdG~f~e~~L~dy~gkyvvlfFyplDft----fVc--PteIiafSd~~~eF~~~n~eVig~S~DS-------~fshlA 83 (196)
T KOG0852|consen 17 AVVDGEFKEIKLSDYKGKYVVLFFYPLDFT----FVC--PTEIIAFSDRAPEFRKLNTEVLGISTDS-------VFSHLA 83 (196)
T ss_pred EEEcCcceEEeehhhcccEEEEEecCCcee----eEC--chhhhhhhhhHHHHHhcCCeEEEEeccc-------hhhhhh
Confidence 445556678999999999999999733321 123 5788888888888876 9999999885 334444
Q ss_pred HH---Hh-cC---CCcceeeCCCCccccccCce----------EEEEcCCCCEEEEecCCcC
Q 004302 170 ML---MK-EY---ITFPILLSNKNFPQMENGAC----------YLLSKDFGNARVFHENSLD 214 (762)
Q Consensus 170 f~---~k-~~---itfPVl~D~~~~~~~~ygv~----------t~lId~~G~iv~~~~G~~~ 214 (762)
++ .| -| +++|++-|....+.+.||+- .|+||++|.++.....+..
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlp 145 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLP 145 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccC
Confidence 43 33 34 45999999999888888753 4999999999987655544
No 159
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.61 E-value=0.00034 Score=62.92 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=52.8
Q ss_pred eEEEecCCCeEEEEeCC-----------------CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCC
Q 004302 323 ASFYHKDDDCLYIVDSE-----------------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDT 385 (762)
Q Consensus 323 GIavd~~~g~LYVADt~-----------------NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~ 385 (762)
++++++++|.||++|+. ++|+.++|+.++.++.++..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-------------------------- 55 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-------------------------- 55 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE--------------------------
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC--------------------------
Confidence 57888755999999953 47999999999999888521
Q ss_pred ccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEECC
Q 004302 386 KSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLA 425 (762)
Q Consensus 386 ~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d~~ 425 (762)
|.+|-||++++|+. |+|+++..+||.++-.+
T Consensus 56 ---------L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 56 ---------LYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp ---------ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred ---------CCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 67899999999865 99999999999998764
No 160
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.57 E-value=0.0016 Score=71.73 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=54.8
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEec---CCCeEEEEeCCC
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHK---DDDCLYIVDSEN 340 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~---~~g~LYVADt~N 340 (762)
|+.|++|++.| +++|||++. ..+|++++.+|.....+..-+.. .......+.||+++| .++.|||+-+..
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v-----~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVDKDGSLKTPVADLPEV-----FADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEETTTEECEEEEE-TTT-----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEeCCCcCcceecccccc-----cccccCCcccceeccccCCCCEEEEEEEcc
Confidence 68899999997 689999998 99999999888762222110000 011223589999998 358999998743
Q ss_pred --------CeEEEEeCCCC
Q 004302 341 --------HAIRRADMGRR 351 (762)
Q Consensus 341 --------hrIRkid~~~g 351 (762)
++|.++....+
T Consensus 74 ~~~~~~~~~~v~r~~~~~~ 92 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDG 92 (331)
T ss_dssp -TSSSSEEEEEEEEEEETT
T ss_pred cCCCCCcceeeEEEeccCC
Confidence 47777766544
No 161
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.57 E-value=0.0078 Score=67.46 Aligned_cols=120 Identities=16% Similarity=0.250 Sum_probs=78.7
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
+.++++++++..+||+.. .+.|.++|. +++++..+-.| ..|.|+++++++..+||+....+.|.+
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-------------~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-------------GNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-------------SEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-------------CCcceEEEcCCCCEEEEEecCCCceeE
Confidence 456778877788999975 679999999 78888877654 249999999989999999999999999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEEEC
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDL 424 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~d~ 424 (762)
+|.++..+.....+++ ..+. + .=..+.+|..++.+. ++++-...++||.+|.
T Consensus 105 ~D~~tle~v~~I~~~~--~~~~----------~---------------~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGG--MPVD----------G---------------PESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EETTT--EEEEEE--E--E-TT----------T---------------S---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred eccccccceeeccccc--cccc----------c---------------cCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 9987765443334331 0000 0 011355777666666 4455677789999997
Q ss_pred CCC
Q 004302 425 ASG 427 (762)
Q Consensus 425 ~~g 427 (762)
+..
T Consensus 158 ~d~ 160 (369)
T PF02239_consen 158 SDP 160 (369)
T ss_dssp TTS
T ss_pred ccc
Confidence 653
No 162
>PTZ00102 disulphide isomerase; Provisional
Probab=97.55 E-value=0.00019 Score=81.95 Aligned_cols=88 Identities=7% Similarity=-0.099 Sum_probs=60.6
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC----CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP----QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~----~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
++++++|.|||+||++| ++..|.+.++.+.+. ++.+.-|+... .. +..+++++.
T Consensus 48 ~~~~~lv~f~a~wC~~C-------k~~~p~~~~~a~~~~~~~~~i~~~~vd~~~------~~----~l~~~~~i~----- 105 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHC-------KRLAPEYKKAAKMLKEKKSEIVLASVDATE------EM----ELAQEFGVR----- 105 (477)
T ss_pred cCCcEEEEEECCCCHHH-------HHhhHHHHHHHHHHHhcCCcEEEEEEECCC------CH----HHHHhcCCC-----
Confidence 57899999999999866 999999999887664 27777776553 21 233344431
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
+.|++++=++|+.+ .+.|..+.+.|.+.+.+++.
T Consensus 106 ----------~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 106 ----------GYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred ----------cccEEEEEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 34553333355555 77898898888888877653
No 163
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.54 E-value=0.0061 Score=65.89 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=111.9
Q ss_pred ccccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCC-----Cc---EEEEecC-----------C------CCC---
Q 004302 257 SSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGN-----GK---ILDCIGS-----------C------PGF--- 308 (762)
Q Consensus 257 ~~~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-----G~---i~~~iGs-----------G------~G~--- 308 (762)
++-....|..||||+..| .+.++|+|.+.+....+|.+ |. ++..+.. | .+|
T Consensus 15 A~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt 93 (336)
T TIGR03118 15 AQIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVS 93 (336)
T ss_pred ccccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEc
Confidence 445667899999999997 78999999999999999987 42 1222210 0 111
Q ss_pred --------------CCCccc------------cccc--C-Cc-----ceEEEecC--CCeEEEEeCCCCeEEEEeCCCCE
Q 004302 309 --------------EDGEFE------------SSKL--M-RP-----AASFYHKD--DDCLYIVDSENHAIRRADMGRRV 352 (762)
Q Consensus 309 --------------~DG~~~------------~a~f--n-~P-----~GIavd~~--~g~LYVADt~NhrIRkid~~~g~ 352 (762)
+||... .+.+ + .+ .|+|+... ++.||.||..|+||.+||..-..
T Consensus 94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 122110 0101 1 11 34454422 57899999999999999854333
Q ss_pred EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEE-------------CCCCEE
Q 004302 353 LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIIN-------------RSFETL 419 (762)
Q Consensus 353 I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD-------------~gN~rI 419 (762)
+. +.|.- . + ..+ .+ =+.|.+|... .++|||+= .+..-|
T Consensus 174 ~~-~~g~F--~-----------D-P~i------------Pa-gyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~V 224 (336)
T TIGR03118 174 PP-LPGSF--I-----------D-PAL------------PA-GYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYV 224 (336)
T ss_pred cc-CCCCc--c-----------C-CCC------------CC-CCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceE
Confidence 32 22210 0 0 000 01 1358899875 79999973 344455
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEe-----cCCEEEEE
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIA-----FQNHILLC 494 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~-----~~g~LYVA 494 (762)
-+||.++..++++. - .+..+.|+|+++++ ..+.|.|-
T Consensus 225 dvFd~~G~l~~r~a-s-------------------------------------~g~LNaPWG~a~APa~FG~~sg~lLVG 266 (336)
T TIGR03118 225 NVFTLNGQLLRRVA-S-------------------------------------SGRLNAPWGLAIAPESFGSLSGALLVG 266 (336)
T ss_pred EEEcCCCcEEEEec-c-------------------------------------CCcccCCceeeeChhhhCCCCCCeEEe
Confidence 66665555444431 1 12234445666642 45899999
Q ss_pred ECCCCEEEEEECCCCc
Q 004302 495 DIVGQRIMRLNRESGV 510 (762)
Q Consensus 495 Dt~NhRIrkidl~~~~ 510 (762)
+.+..+|-.||..+|.
T Consensus 267 NFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 267 NFGDGTINAYDPQSGA 282 (336)
T ss_pred ecCCceeEEecCCCCc
Confidence 9999999999987654
No 164
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.51 E-value=0.00029 Score=79.51 Aligned_cols=86 Identities=5% Similarity=-0.094 Sum_probs=58.8
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.++.|||.|||+||++| ...+|.+.++.+.+++ +.+..|+.+. . . .+
T Consensus 363 ~~~~vlv~f~a~wC~~C-------~~~~p~~~~~~~~~~~~~~~i~~~~id~~~------n--~-----------~~--- 413 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHC-------KNLAPIYEELAEKYKDAESDVVIAKMDATA------N--D-----------VP--- 413 (462)
T ss_pred CCCeEEEEEECCCCHhH-------HHHHHHHHHHHHHhhcCCCcEEEEEEECCC------C--c-----------cC---
Confidence 58999999999999866 9999999999999875 6777777654 1 0 00
Q ss_pred CCCCccccccCceE-EEEcCCCCE-EEEecCCcCHHHHHHHHHHHH
Q 004302 183 SNKNFPQMENGACY-LLSKDFGNA-RVFHENSLDIGMLNKAVEELI 226 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~~G~i-v~~~~G~~~~~~L~~~l~~ll 226 (762)
. ..-.++|+ +++.+.++. .....|..+.+.|.+.|.+..
T Consensus 414 ---~--~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 414 ---P--FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred ---C--CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 0 11124575 555544442 345678888777777766543
No 165
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.50 E-value=0.00041 Score=71.66 Aligned_cols=93 Identities=8% Similarity=-0.109 Sum_probs=63.8
Q ss_pred CCCCEEEEEEec---cCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 106 RGGAFLVLAGRF---VDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 106 ~rGK~VvLnFWA---tWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.++.+.++-|.+ +||+|| +...|.|+++.++|+++++.-+..+. +.-.+..+++++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C-------~~~~p~l~~la~~~~~~~i~~v~vd~--------~~~~~l~~~~~V------ 75 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYC-------KETEQLLEELSEVSPKLKLEIYDFDT--------PEDKEEAEKYGV------ 75 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCch-------HHHHHHHHHHHhhCCCceEEEEecCC--------cccHHHHHHcCC------
Confidence 344444555888 999866 99999999999999876555555542 011122223321
Q ss_pred CCCCccccccCceEEEEcCCCCEEE-EecCCcCHHHHHHHHHHHHHh
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARV-FHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~-~~~G~~~~~~L~~~l~~ll~~ 228 (762)
.++||+++=++|+.+. ++.|..+.+++.+.|+.++.-
T Consensus 76 ---------~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 76 ---------ERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred ---------CccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHh
Confidence 2466776656788874 889999989999999988754
No 166
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.49 E-value=7.9e-05 Score=71.48 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.5
Q ss_pred ceeecccCCCccccCCCCCCEEEEEEeccCCCCc
Q 004302 90 HHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDS 123 (762)
Q Consensus 90 ~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC 123 (762)
+..|...-.+-+..+.-+||+|+|+|.+.||++|
T Consensus 5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~C 38 (130)
T cd02960 5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHS 38 (130)
T ss_pred cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhH
Confidence 3556532222345555689999999999999865
No 167
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.40 E-value=0.025 Score=60.22 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=106.5
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..+.||+.+|.++.||..--....|+.++.+|+++..+.- .| |.-|.||++-. ++.+.|++..+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-~g----------~~D~EgI~y~g-~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-DG----------FGDYEGITYLG-NGRYVLSEERDQR 87 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--SS-----------SSEEEEEE-S-TTEEEEEETTTTE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-CC----------CCCceeEEEEC-CCEEEEEEcCCCc
Confidence 456699999999889999666678999999999999987753 12 44599999984 7888888988999
Q ss_pred EEEEeCCC--CEE--EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECCCC
Q 004302 343 IRRADMGR--RVL--ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRSFE 417 (762)
Q Consensus 343 IRkid~~~--g~I--~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~gN~ 417 (762)
+.+|+... ..+ ..+.-- .+|... ..=..-.|||+|+. +.|||+-..+-
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~----------------~l~~~~-----------~~N~G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKI----------------SLGFPN-----------KGNKGFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp EEEEEE----TT--EEEEEEE----------------E---S--------------SS--EEEEEETTTTEEEEEEESSS
T ss_pred EEEEEEeccccccchhhceEE----------------eccccc-----------CCCcceEEEEEcCCCCEEEEEeCCCC
Confidence 99887632 111 110000 011100 00013579999985 78888855443
Q ss_pred -EEEEEECC--CCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEE
Q 004302 418 -TLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLC 494 (762)
Q Consensus 418 -rI~v~d~~--~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVA 494 (762)
+|+.++.. ...+... . . ..+.+ ..+ .. ..+ -+.++.+..++|||-
T Consensus 141 ~~l~~~~~~~~~~~~~~~-~---------~------~~~~~---~~~--------~~--~d~---S~l~~~p~t~~lliL 188 (248)
T PF06977_consen 141 KRLYEVNGFPGGFDLFVS-D---------D------QDLDD---DKL--------FV--RDL---SGLSYDPRTGHLLIL 188 (248)
T ss_dssp EEEEEEESTT-SS--EEE-E----------------HHHH----HT----------S--S------EEEEETTTTEEEEE
T ss_pred hhhEEEccccCccceeec-c---------c------ccccc---ccc--------ee--ccc---cceEEcCCCCeEEEE
Confidence 45555431 1111100 0 0 00000 000 00 011 234456678899999
Q ss_pred ECCCCEEEEEECCCCcEEEEeeccccccCCCceeecc
Q 004302 495 DIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFP 531 (762)
Q Consensus 495 Dt~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~~p 531 (762)
...+++|..+|.++..++.+.+... .-|++..+..|
T Consensus 189 S~es~~l~~~d~~G~~~~~~~L~~g-~~gl~~~~~Qp 224 (248)
T PF06977_consen 189 SDESRLLLELDRQGRVVSSLSLDRG-FHGLSKDIPQP 224 (248)
T ss_dssp ETTTTEEEEE-TT--EEEEEE-STT-GGG-SS---SE
T ss_pred ECCCCeEEEECCCCCEEEEEEeCCc-ccCcccccCCc
Confidence 9999999999999988887766442 22444444444
No 168
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.37 E-value=0.0091 Score=66.90 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=76.3
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCE-E
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRV-L 353 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~-I 353 (762)
++-+||++.+.+.|.++|. +.+++..+.++. +.+.++++++++..+||+.. .+.|.+||+.++. +
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~------------~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v 71 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG------------APHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVV 71 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST------------TEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC------------CceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEE
Confidence 4566799999999999998 578888886531 12566788888889999985 5799999998764 4
Q ss_pred EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEEEEEECCCCcEE
Q 004302 354 ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 354 ~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
.++ ..| . .|.|+++++|| .+||++...+.+.++|.++.++.
T Consensus 72 ~~i-~~G------------------~-----------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 72 ATI-KVG------------------G-----------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EEE-E-S------------------S-----------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEE-ecC------------------C-----------------CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 454 232 1 48999999986 59999999999999999887643
No 169
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.32 E-value=0.00034 Score=80.92 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHH----HHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCc
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVK----SIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITF 178 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~----~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itf 178 (762)
+++-|+|||+|||.|.||--| +||.++- +.+++.+|++.+=++... +..+..+++++++
T Consensus 469 la~~~~~pVmlDfyAdWCvtC--------K~~e~~tfsd~~v~~~~~~~vlLqaDvT~------~~p~~~~lLk~~~--- 531 (569)
T COG4232 469 LAEAKAKPVMLDFYADWCVTC--------KENEKYTFSDPQVQQALQDVVLLQADVTA------NDPAITALLKRLG--- 531 (569)
T ss_pred HHhCCCCcEEEeeehhHHHHh--------HhhhhhccCcHHHHHhcCCeEEEEeeecC------CCHHHHHHHHHcC---
Confidence 455677899999999999855 7776542 355566677776666654 6678889999886
Q ss_pred ceeeCCCCccccccCce-EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 179 PILLSNKNFPQMENGAC-YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv~-t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
..|+| +++++++|+......|.++.+.+.+.+++.
T Consensus 532 ------------~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 532 ------------VFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred ------------CCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 46778 689999999988899999999988888753
No 170
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.29 E-value=0.0051 Score=67.78 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=73.2
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCCc---EEEEEcCCCcEE--EEecCC--CCC------CCCcccccc-----cCCc
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNHH---RIIVFDGNGKIL--DCIGSC--PGF------EDGEFESSK-----LMRP 321 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~nh---rI~v~d~~G~i~--~~iGsG--~G~------~DG~~~~a~-----fn~P 321 (762)
-...|+.|.++++|+..++||++|.+.+ .|-++...+.+= ...|.. .+. ......... =..|
T Consensus 176 ~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap 255 (331)
T PF07995_consen 176 YAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAP 255 (331)
T ss_dssp EEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--E
T ss_pred EEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCcccc
Confidence 3457999999999987799999997754 344433211110 000000 000 000011111 1568
Q ss_pred ceEEEecC------CCeEEEEeCCCCeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCC
Q 004302 322 AASFYHKD------DDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS 394 (762)
Q Consensus 322 ~GIavd~~------~g~LYVADt~NhrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 394 (762)
.|+++-.. .+.++|+|...++|.++.++.+ .+....-. . ..
T Consensus 256 ~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------~---------------~~ 303 (331)
T PF07995_consen 256 TGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF-----------------L---------------GG 303 (331)
T ss_dssp EEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE-----------------C---------------TT
T ss_pred CceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc-----------------c---------------cc
Confidence 88887632 5689999999999999987633 32111000 0 01
Q ss_pred CC-CcceEEEcCCCcEEEEECCCCEEEE
Q 004302 395 LI-FPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 395 L~-~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
+. .|.+|++++||.|||+|-.+++|++
T Consensus 304 ~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp SSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred CCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 22 6999999999999999988888875
No 171
>PHA02125 thioredoxin-like protein
Probab=97.28 E-value=0.00065 Score=58.47 Aligned_cols=32 Identities=0% Similarity=-0.131 Sum_probs=23.6
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHG 155 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~ 155 (762)
++.|||+||+|| +...|.|+++. ++++-|+.+
T Consensus 2 iv~f~a~wC~~C-------k~~~~~l~~~~-----~~~~~vd~~ 33 (75)
T PHA02125 2 IYLFGAEWCANC-------KMVKPMLANVE-----YTYVDVDTD 33 (75)
T ss_pred EEEEECCCCHhH-------HHHHHHHHHHh-----heEEeeeCC
Confidence 789999999866 88889887663 345555543
No 172
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.26 E-value=0.0016 Score=58.36 Aligned_cols=79 Identities=6% Similarity=-0.028 Sum_probs=55.3
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+.++++.+-+.-|++.||++| ...-+.++++.+.++++.+.-++.++ ..+..+++++.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C-------~~~~~~~~~l~~~~~~i~~~~vd~~~----------~~e~a~~~~V~----- 64 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNC-------PDVVQALNLMAVLNPNIEHEMIDGAL----------FQDEVEERGIM----- 64 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCc-------HHHHHHHHHHHHHCCCceEEEEEhHh----------CHHHHHHcCCc-----
Confidence 457889999999999999866 77788888999999888877776553 22344444432
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGM 217 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~ 217 (762)
++|++++ +|+++.. |..+.++
T Consensus 65 ----------~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 65 ----------SVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred ----------cCCEEEE--CCEEEEe--CCCCHHH
Confidence 4677777 4776664 6555444
No 173
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.19 E-value=0.0019 Score=58.14 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred eEEEcCC-CcEEEEEC-----------------CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccc
Q 004302 400 HLMKSED-DNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW 461 (762)
Q Consensus 400 gIavd~d-G~LYVAD~-----------------gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~ 461 (762)
+|+++++ |.||++|+ .++|+.+||+.+++++.+..|
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-------------------------- 55 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-------------------------- 55 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE--------------------------
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC--------------------------
Confidence 5888888 99999996 457899999988876654311
Q ss_pred cccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCC
Q 004302 462 LLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES 508 (762)
Q Consensus 462 ~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~ 508 (762)
.+.|.|++++.++..|+||++..+||.|+-++|
T Consensus 56 --------------L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 56 --------------LYFPNGVALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp --------------ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred --------------CCccCeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 122357888888889999999999999998875
No 174
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.17 E-value=0.0013 Score=54.62 Aligned_cols=39 Identities=5% Similarity=-0.225 Sum_probs=32.7
Q ss_pred EEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 111 LVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 111 VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
-|.-||++||++| ....|.|+++.+.++++.+.-++.++
T Consensus 2 ~v~~f~~~~C~~C-------~~~~~~l~~l~~~~~~i~~~~id~~~ 40 (67)
T cd02973 2 NIEVFVSPTCPYC-------PDAVQAANRIAALNPNISAEMIDAAE 40 (67)
T ss_pred EEEEEECCCCCCc-------HHHHHHHHHHHHhCCceEEEEEEccc
Confidence 3678999999865 99999999999888888887777664
No 175
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.10 E-value=0.1 Score=55.90 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=101.0
Q ss_pred CCcceEEEccCCCEEEEEeC--CCcEEEEEcC-CCcEEEEecCC-CCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 265 HFPGCISADESGNRLFLSDS--NHHRIIVFDG-NGKILDCIGSC-PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs--~nhrI~v~d~-~G~i~~~iGsG-~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.+-.|+.+. .+|.||.+-. +..+|+++|. +|++....--. .-| -.||++. ++.||.--+.+
T Consensus 45 aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F------------gEGit~~--~d~l~qLTWk~ 109 (264)
T PF05096_consen 45 AFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF------------GEGITIL--GDKLYQLTWKE 109 (264)
T ss_dssp -EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--------------EEEEEEE--TTEEEEEESSS
T ss_pred ccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc------------ceeEEEE--CCEEEEEEecC
Confidence 345788885 2789999985 5668999998 68887654321 112 3569986 78999999999
Q ss_pred CeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
+...++|.++-. +.++. . . ...|||+.| +..||++| |.++|
T Consensus 110 ~~~f~yd~~tl~~~~~~~------y------------~------------------~EGWGLt~d-g~~Li~SD-GS~~L 151 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFP------Y------------P------------------GEGWGLTSD-GKRLIMSD-GSSRL 151 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-------------------S------------------SS--EEEEC-SSCEEEE--SSSEE
T ss_pred CeEEEEccccceEEEEEe------c------------C------------------CcceEEEcC-CCEEEEEC-Cccce
Confidence 999999987643 22321 0 0 146899976 56888888 68999
Q ss_pred EEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC
Q 004302 420 WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ 499 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh 499 (762)
+.+|+++-.+..-..- ..-| +|...++ -+--.+|.||--=-..+
T Consensus 152 ~~~dP~~f~~~~~i~V-----~~~g------------~pv~~LN-------------------ELE~i~G~IyANVW~td 195 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQV-----TDNG------------RPVSNLN-------------------ELEYINGKIYANVWQTD 195 (264)
T ss_dssp EEE-TTT-SEEEEEE------EETT------------EE---EE-------------------EEEEETTEEEEEETTSS
T ss_pred EEECCcccceEEEEEE-----EECC------------EECCCcE-------------------eEEEEcCEEEEEeCCCC
Confidence 9999987543221110 0001 0111000 01123788888888899
Q ss_pred EEEEEECCCCcEEE
Q 004302 500 RIMRLNRESGVCSN 513 (762)
Q Consensus 500 RIrkidl~~~~~st 513 (762)
+|.+||+++|.|..
T Consensus 196 ~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 196 RIVRIDPETGKVVG 209 (264)
T ss_dssp EEEEEETTT-BEEE
T ss_pred eEEEEeCCCCeEEE
Confidence 99999999998874
No 176
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.03 E-value=0.016 Score=57.30 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=84.6
Q ss_pred CCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHH-CCC--eEEEEE-EcCCCccCcCCHHHHHHHHH
Q 004302 97 VEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQS-FPQ--LQVIGF-LHGCSTISAVDQTRLVEMLM 172 (762)
Q Consensus 97 ~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~-y~~--v~VvgV-~~~~~~~~e~~~~~v~~f~~ 172 (762)
+.++++..++.||+-||..-|---.- +..--|-++.+.+. |+. .+..+| +.++ .... +..-|+..++
T Consensus 26 ~y~~W~s~~l~GKVrviq~iAGr~sa-------ke~N~~l~~aik~a~f~~d~yqtttIiN~dD-Ai~g-t~~fVrss~e 96 (160)
T PF09695_consen 26 SYQPWNSAQLPGKVRVIQHIAGRSSA-------KEMNAPLIEAIKAAKFPHDKYQTTTIINLDD-AIWG-TGGFVRSSAE 96 (160)
T ss_pred cccccCccccCCCEEEEEEeccCCch-------hHhhHHHHHHHHHcCCCccceeEEEEEeccc-cccc-chHHHHHHHH
Confidence 34578888999999999987654430 02333667777776 765 665554 3333 1111 3345677777
Q ss_pred hcC--CCcc-eeeCCCCccccccCce-----EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 173 KEY--ITFP-ILLSNKNFPQMENGAC-----YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 173 k~~--itfP-Vl~D~~~~~~~~ygv~-----t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+.. ++++ +++|.++.+..+++++ -+++|++|++++.+.|.++.+++.+.|.-+
T Consensus 97 ~~kk~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 97 DSKKEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred HhhhhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 655 4454 7899999888888776 489999999999999999999999887643
No 177
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.98 E-value=0.046 Score=62.83 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=54.9
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecC------CCeEE
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKD------DDCLY 334 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~------~g~LY 334 (762)
..|..|++|++.+ ++++||+.....+|++++.++ ......+. +... .......+.|||++|+ ++.||
T Consensus 27 ~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~v~----~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 27 SGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTL-PEIV----NDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred CCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecC-Ccee----ccCCCCceeeEEECCCccccCCCcEEE
Confidence 3699999999997 789999998889999998744 33222222 1100 0012345899999863 45899
Q ss_pred EEeCC---------CCeEEEEeCC
Q 004302 335 IVDSE---------NHAIRRADMG 349 (762)
Q Consensus 335 VADt~---------NhrIRkid~~ 349 (762)
|+=+. .++|.++...
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEec
Confidence 98422 4578877654
No 178
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.86 E-value=0.0049 Score=50.99 Aligned_cols=72 Identities=13% Similarity=-0.105 Sum_probs=44.8
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQME 191 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ 191 (762)
+.-||++||++| ++..+.|++. ++.+.-++.+. +.+...++.+..++.
T Consensus 2 i~lf~~~~C~~C-------~~~~~~l~~~-----~i~~~~vdi~~------~~~~~~~~~~~~~~~-------------- 49 (74)
T TIGR02196 2 VKVYTTPWCPPC-------KKAKEYLTSK-----GIAFEEIDVEK------DSAAREEVLKVLGQR-------------- 49 (74)
T ss_pred EEEEcCCCChhH-------HHHHHHHHHC-----CCeEEEEeccC------CHHHHHHHHHHhCCC--------------
Confidence 457999999865 8888887653 56677777765 445555666665532
Q ss_pred cCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 192 NGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 192 ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
++|+++++ |++ ..| .+.+.|++.|
T Consensus 50 -~vP~~~~~--~~~---~~g-~~~~~i~~~i 73 (74)
T TIGR02196 50 -GVPVIVIG--HKI---IVG-FDPEKLDQLL 73 (74)
T ss_pred -cccEEEEC--CEE---Eee-CCHHHHHHHh
Confidence 35555554 443 444 3556666554
No 179
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.19 Score=51.19 Aligned_cols=111 Identities=17% Similarity=0.239 Sum_probs=68.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 271 SADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 271 AVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
++. .++.+|+++ .++.|+.+|. +|+++-.+-.. + .+..+ ..++ ++.+||+...+ +|+.+|..
T Consensus 32 ~~~-~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~-~---------~~~~~--~~~~--~~~v~v~~~~~-~l~~~d~~ 94 (238)
T PF13360_consen 32 AVP-DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLP-G---------PISGA--PVVD--GGRVYVGTSDG-SLYALDAK 94 (238)
T ss_dssp EEE-ETTEEEEEE-TTSEEEEEETTTSEEEEEEECS-S---------CGGSG--EEEE--TTEEEEEETTS-EEEEEETT
T ss_pred EEE-eCCEEEEEc-CCCEEEEEECCCCCEEEEeecc-c---------cccce--eeec--cccccccccee-eeEecccC
Confidence 452 389999995 7899999997 99877544221 1 11112 2443 78999998555 99999976
Q ss_pred CCEEEEE-eecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 350 RRVLETV-YPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 350 ~g~I~Ti-aG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
+|.+.-- .....+ ...+..+...+++ ++.+|++.. ++.|+.+|+++|.
T Consensus 95 tG~~~W~~~~~~~~-----------------------------~~~~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 95 TGKVLWSIYLTSSP-----------------------------PAGVRSSSSPAVD-GDRLYVGTS-SGKLVALDPKTGK 143 (238)
T ss_dssp TSCEEEEEEE-SSC-----------------------------TCSTB--SEEEEE-TTEEEEEET-CSEEEEEETTTTE
T ss_pred Ccceeeeecccccc-----------------------------ccccccccCceEe-cCEEEEEec-cCcEEEEecCCCc
Confidence 6654332 222100 0113345556665 556666665 7788888888887
Q ss_pred E
Q 004302 429 I 429 (762)
Q Consensus 429 I 429 (762)
+
T Consensus 144 ~ 144 (238)
T PF13360_consen 144 L 144 (238)
T ss_dssp E
T ss_pred E
Confidence 5
No 180
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.014 Score=57.08 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=87.6
Q ss_pred CCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHH
Q 004302 87 QGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTR 166 (762)
Q Consensus 87 ~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~ 166 (762)
.+|+|+..+.+.+.++|.++.||..||+-+.+=-. |=| -.+--++++...++.+..|+.|+.|- +=.
T Consensus 23 ~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT----~VC--~~qvr~Fn~~aa~~~~~~Vl~IS~DL-------PFA 89 (158)
T COG2077 23 KAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDT----PVC--ATQVRKFNEEAAKLGNTVVLCISMDL-------PFA 89 (158)
T ss_pred cCCceEEEcCcccceeccccCCceEEEEEccCCCC----chh--hHHHHHHHHHHhccCCcEEEEEeCCC-------hhH
Confidence 57889999999999999999999999998876653 467 88888999999999999999998874 567
Q ss_pred HHHHHHhcCCCcceeeCC--CCccccccCce-------------EEEEcCCCCEEEEe
Q 004302 167 LVEMLMKEYITFPILLSN--KNFPQMENGAC-------------YLLSKDFGNARVFH 209 (762)
Q Consensus 167 v~~f~~k~~itfPVl~D~--~~~~~~~ygv~-------------t~lId~~G~iv~~~ 209 (762)
..+|...+||..-+.+++ +....+.||+- -|++|.+|++++..
T Consensus 90 q~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 90 QKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred HhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 889999999987544443 22334556542 28999999999853
No 181
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.66 E-value=0.019 Score=67.79 Aligned_cols=83 Identities=10% Similarity=-0.011 Sum_probs=60.1
Q ss_pred CCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhh--ccCccccCCCccCCCCCCCCC
Q 004302 319 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIME--KLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 319 n~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~--~~G~~~~~~~~~~~~~~~~L~ 396 (762)
.+|+|++++|++..+||+....+.|-+||..+... .+++.= -+.+.++. +.|+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~~~~-------~~~~~vvaevevGl----------------- 375 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFDGKI-------KPRDAVVAEPELGL----------------- 375 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhhccC-------CccceEEEeeccCC-----------------
Confidence 67999999999999999999999999999754321 111110 00011110 0122
Q ss_pred CcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 397 FPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
.|.+.++|.+|+.|++=.-.+.|.+||.+.
T Consensus 376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 699999999999999998889999999865
No 182
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.65 E-value=0.02 Score=59.96 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=67.1
Q ss_pred cCCcceEEEecCCCeEEEEeCCCCeEEEEe--CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCC
Q 004302 318 LMRPAASFYHKDDDCLYIVDSENHAIRRAD--MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL 395 (762)
Q Consensus 318 fn~P~GIavd~~~g~LYVADt~NhrIRkid--~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L 395 (762)
+.-|.|++.|.+...+|+.|+.|+.|..+| ..+|.++.-- .+ ..+. ++.+ ..=
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~--------------~i---~dlr-----k~~~---~e~ 211 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK--------------VI---FDLR-----KSQP---FES 211 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcc--------------ee---EEec-----cCCC---cCC
Confidence 344788999988899999999999996555 5555442110 00 0000 0000 112
Q ss_pred CCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE-EEEEcCCceeeE
Q 004302 396 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLE 441 (762)
Q Consensus 396 ~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I-~ti~~G~g~~~~ 441 (762)
..|-|+++|.+|+||||-.+..+|+++|+.+|++ .++-.+..++..
T Consensus 212 ~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 212 LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 3699999999999999999999999999999975 444444444433
No 183
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.038 Score=62.34 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=84.6
Q ss_pred ccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-----CC----cEEEEecCC-CCC--CCCc----ccc-----cc
Q 004302 259 VRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-----NG----KILDCIGSC-PGF--EDGE----FES-----SK 317 (762)
Q Consensus 259 ~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-----~G----~i~~~iGsG-~G~--~DG~----~~~-----a~ 317 (762)
...-.++.|.|++.+|..+.||++|.+...++--|. .| .-..++|.. .|. .++. +.. +.
T Consensus 233 i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~ 312 (399)
T COG2133 233 IWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAP 312 (399)
T ss_pred eEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeecc
Confidence 344589999999999988999999998855532222 22 223344431 111 1111 111 12
Q ss_pred cCCcceEEEecCC-------CeEEEEeCCCCeEEEEeCCCC---EEEEEeecCCCCCCCCchhhhhhhccCccccCCCcc
Q 004302 318 LMRPAASFYHKDD-------DCLYIVDSENHAIRRADMGRR---VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS 387 (762)
Q Consensus 318 fn~P~GIavd~~~-------g~LYVADt~NhrIRkid~~~g---~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~ 387 (762)
-..|.||++-. + +.|||+--+.-.+.+.++.++ +.+.+.-..
T Consensus 313 h~ApsGmaFy~-G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d--------------------------- 364 (399)
T COG2133 313 HIAPSGMAFYT-GDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGD--------------------------- 364 (399)
T ss_pred ccccceeEEec-CCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecC---------------------------
Confidence 24579999873 3 589998866666666776666 222221100
Q ss_pred CCCCCCCCCCcceEEEcCCCcEEEEECC-CCEEEEEECC
Q 004302 388 EKLDPQSLIFPWHLMKSEDDNLLIINRS-FETLWIMDLA 425 (762)
Q Consensus 388 ~~~~~~~L~~P~gIavd~dG~LYVAD~g-N~rI~v~d~~ 425 (762)
.-..|.+|++.+||.|||+|-. |.+|+++...
T Consensus 365 ------~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 365 ------LGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred ------CCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 0137999999999999999877 6699998764
No 184
>smart00594 UAS UAS domain.
Probab=96.48 E-value=0.0095 Score=56.14 Aligned_cols=93 Identities=14% Similarity=-0.075 Sum_probs=53.8
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
+.-+||+++|+|++.||++| -..|-..-.-|.+.++-++ ++.++++.... .+ -.++.+++++
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c-~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~-------~e-g~~l~~~~~~------- 84 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDS-QVFNRDVLCNEAVKSLIRE--NFIFWQVDVDT-------SE-GQRVSQFYKL------- 84 (122)
T ss_pred HHhhcCCEEEEEeCCCCchH-HHHHHHHccCHHHHHHHHc--CEEEEEecCCC-------hh-HHHHHHhcCc-------
Confidence 34579999999999999866 1111001122334443332 36666665443 11 2344444443
Q ss_pred CCCccccccCce-EEEEcCCC-----CEEEEecCCcCHHHHHHHH
Q 004302 184 NKNFPQMENGAC-YLLSKDFG-----NARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 184 ~~~~~~~~ygv~-t~lId~~G-----~iv~~~~G~~~~~~L~~~l 222 (762)
.+.| .++++++| +++.+..|..+.++|...|
T Consensus 85 --------~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 --------DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred --------CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 1334 36777776 4677889999988887654
No 185
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.42 E-value=0.0093 Score=45.95 Aligned_cols=38 Identities=0% Similarity=-0.374 Sum_probs=30.9
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
|+.||+.||+.| .+..+.++++....+++.++.++.+.
T Consensus 1 l~~~~~~~c~~c-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFC-------QALRPVLAELALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhH-------HhhhhHHHHHHhhCCCcEEEEEEcCC
Confidence 578999999755 99999999994444459999998875
No 186
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.42 E-value=0.0087 Score=62.48 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=81.6
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHH-----CCCeEEEEEEcCCCccCcCCHHHHHH--HHH
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQS-----FPQLQVIGFLHGCSTISAVDQTRLVE--MLM 172 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~-----y~~v~VvgV~~~~~~~~e~~~~~v~~--f~~ 172 (762)
...+.+.+|+|+||.+-..+|..| ......|+.|..+ |+++.++.|+.-+ ...++.- +-.
T Consensus 18 ~~pm~~~~G~VtvVALL~asc~~c-------~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~------~~s~~~~~~l~~ 84 (238)
T PF04592_consen 18 QDPMLNSLGHVTVVALLQASCYFC-------LLQASRLEDLREKLENEGLSNISFMVVNHQG------EHSRLKYWELKR 84 (238)
T ss_pred chHhhhcCCcEEeeeehhhhhHHH-------HHHHHHHHHHHHHHHHCCCCceEEEEEcCCC------cchhHHHHHHHH
Confidence 456678899999999999999866 8889999999855 4569999998764 2333332 233
Q ss_pred hcCCCcceee-C-CCCccccccCce---EEEEcCCCCEEEEecCC---cCHHHHHHHHHHHHHh
Q 004302 173 KEYITFPILL-S-NKNFPQMENGAC---YLLSKDFGNARVFHENS---LDIGMLNKAVEELIMQ 228 (762)
Q Consensus 173 k~~itfPVl~-D-~~~~~~~~ygv~---t~lId~~G~iv~~~~G~---~~~~~L~~~l~~ll~~ 228 (762)
+..-.+||+. | ....+|..++-. .||+|+=|++++...=. +...-++++|+....+
T Consensus 85 r~~~~ipVyqq~~~q~dvW~~L~G~kdD~~iyDRCGrL~~~i~~P~S~l~~~~ve~Ai~~ty~~ 148 (238)
T PF04592_consen 85 RVSEHIPVYQQDENQPDVWELLNGSKDDFLIYDRCGRLTYHIPLPYSFLQFPYVEAAIKSTYCE 148 (238)
T ss_pred hCCCCCceecCCccccCHHHHhCCCcCcEEEEeccCcEEEEecCcHHHhcCHHHHHHHHHHHcc
Confidence 4444599997 3 345678776544 69999999999865433 3334466777655444
No 187
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.27 E-value=0.0052 Score=53.59 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=28.9
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcc----hhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGT----VVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~----~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
+.-+||+|+|+|.|.||++| .. ..+-|.+.++.. +++..+-|..+.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C-----~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~ 62 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPC-----KKLEREVFSDPEVQEALN--KNFVLVKVDVDD 62 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHH-----HHHHHHTTTSHHHHHHHH--HCSEEEEEETTT
T ss_pred HHHcCCCEEEEEECCCCHhH-----HHHHHHHcCCHHHHHHHH--CCEEEEEEEcCC
Confidence 34569999999999999865 21 112244555222 247777777654
No 188
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.24 E-value=0.017 Score=48.68 Aligned_cols=22 Identities=0% Similarity=-0.185 Sum_probs=18.5
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHH
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSI 140 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L 140 (762)
+.-||++||++| ++..+.|+++
T Consensus 2 v~ly~~~~C~~C-------~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYC-------AQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhH-------HHHHHHHHHc
Confidence 457999999866 9999988877
No 189
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.13 E-value=0.99 Score=44.76 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=71.5
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+...+.+..++++. .++.|.+++.+. +....+-. .-.....+.+++ ++.++++...++.|+.+
T Consensus 55 ~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~------------~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 55 RDVAASADGTYLASGS-SDKTIRLWDLETGECVRTLTG------------HTSYVSSVAFSP-DGRILSSSSRDKTIKVW 120 (289)
T ss_pred eEEEECCCCCEEEEEc-CCCeEEEEEcCcccceEEEec------------cCCcEEEEEEcC-CCCEEEEecCCCeEEEE
Confidence 3666775444555544 478888888754 34333321 112467788886 46677777778899999
Q ss_pred eCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
|..++.. ..+.+. -..+..+++++++.++++-..++.|++||..
T Consensus 121 ~~~~~~~~~~~~~~-----------------------------------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 121 DVETGKCLTTLRGH-----------------------------------TDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred ECCCcEEEEEeccC-----------------------------------CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 9874433 222100 1136788888877777777678899999987
Q ss_pred CCc
Q 004302 426 SGE 428 (762)
Q Consensus 426 ~g~ 428 (762)
++.
T Consensus 166 ~~~ 168 (289)
T cd00200 166 TGK 168 (289)
T ss_pred ccc
Confidence 554
No 190
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.13 E-value=0.015 Score=60.53 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=70.9
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
.-.+.++.+++=|+-|+.+.|+.| .+..|.|+.+.++| ++.|+.|++|.. ... .||
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C-------~~~~pil~~~~~~y-g~~v~~vs~DG~-----~~~-----------~fp 167 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYC-------QQQAPILQQFADKY-GFSVIPVSLDGR-----PIP-----------SFP 167 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchh-------HHHHHHHHHHHHHh-CCEEEEEecCCC-----CCc-----------CCC
Confidence 445667788999999999999855 99999999999999 699999999861 100 233
Q ss_pred eeeCCCCccccccCce----EEEEcCCC-CEEEEecCCcCHHHHHHHH
Q 004302 180 ILLSNKNFPQMENGAC----YLLSKDFG-NARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~----t~lId~~G-~iv~~~~G~~~~~~L~~~l 222 (762)
-...+.+ ....+++. .||+++++ +..-...|.++.++|...|
T Consensus 168 ~~~~~~g-~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 168 NPRPDPG-QAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCCCHH-HHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 3322221 23345543 48888877 5556789999999888765
No 191
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.12 E-value=0.47 Score=51.52 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=56.6
Q ss_pred ceEEEccCCCEEEEEeCCC------------cEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCC----
Q 004302 268 GCISADESGNRLFLSDSNH------------HRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDD---- 330 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~n------------hrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~---- 330 (762)
.+|.+| ..++|+|.|+|. -+|+.||. +++++..+--...... .-..-..+++|...
T Consensus 4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~------~~s~lndl~VD~~~~~~~ 76 (287)
T PF03022_consen 4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP------PDSFLNDLVVDVRDGNCD 76 (287)
T ss_dssp EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-------TCGGEEEEEEECTTTTS-
T ss_pred cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc------cccccceEEEEccCCCCc
Confidence 578999 589999999885 59999998 6777765532111000 01123457777522
Q ss_pred -CeEEEEeCCCCeEEEEeCCCCEEEEEe
Q 004302 331 -DCLYIVDSENHAIRRADMGRRVLETVY 357 (762)
Q Consensus 331 -g~LYVADt~NhrIRkid~~~g~I~Tia 357 (762)
+..||+|.++..|.++|+.++....+.
T Consensus 77 ~~~aYItD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 77 DGFAYITDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp SEEEEEEETTTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCcCcEEEEEccCCcEEEEe
Confidence 589999999999999999998777664
No 192
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.12 E-value=0.9 Score=45.08 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=73.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
...++++++ +++++++...++.|.+++.. ++....+-. .-..+..++++++ +.++++-..++.|+
T Consensus 95 ~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~-~~~l~~~~~~~~i~ 160 (289)
T cd00200 95 YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRG------------HTDWVNSVAFSPD-GTFVASSSQDGTIK 160 (289)
T ss_pred cEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEecc------------CCCcEEEEEEcCc-CCEEEEEcCCCcEE
Confidence 456677775 46677777778899999985 665554431 1124678889875 45555555577899
Q ss_pred EEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.+|...+. +.++.+. -.....+++.+++..+++-..++.|++||
T Consensus 161 i~d~~~~~~~~~~~~~-----------------------------------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 161 LWDLRTGKCVATLTGH-----------------------------------TGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEccccccceeEecC-----------------------------------ccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 99986433 2222100 01356788888874444444488999999
Q ss_pred CCCCcE
Q 004302 424 LASGEI 429 (762)
Q Consensus 424 ~~~g~I 429 (762)
..++..
T Consensus 206 ~~~~~~ 211 (289)
T cd00200 206 LSTGKC 211 (289)
T ss_pred CCCCce
Confidence 876543
No 193
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.08 E-value=0.071 Score=62.55 Aligned_cols=86 Identities=22% Similarity=0.217 Sum_probs=56.9
Q ss_pred cccCCcceEEEecCCCeEEEEeCCCC-------------------eEEEEeCCCC-------EEEEEeecCCCCCCCCch
Q 004302 316 SKLMRPAASFYHKDDDCLYIVDSENH-------------------AIRRADMGRR-------VLETVYPTSGISKKNNSL 369 (762)
Q Consensus 316 a~fn~P~GIavd~~~g~LYVADt~Nh-------------------rIRkid~~~g-------~I~TiaG~G~~~~~G~~~ 369 (762)
..|++|.+|++++.++.+||+-|.|. .|.+++..++ .+..++-.|.+.....
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~-- 424 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG-- 424 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc--
Confidence 57999999999999999999998877 6777776655 4444332221000000
Q ss_pred hhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE-ECCCCE
Q 004302 370 WAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII-NRSFET 418 (762)
Q Consensus 370 ~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA-D~gN~r 418 (762)
..........|.+|-+|+++++|+|||+ |.+++.
T Consensus 425 ---------------~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~ 459 (524)
T PF05787_consen 425 ---------------NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSN 459 (524)
T ss_pred ---------------cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCC
Confidence 0001113456999999999999999997 444443
No 194
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.05 E-value=0.42 Score=52.42 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=102.8
Q ss_pred EEEEeCCCcEEEEE--cCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEE
Q 004302 279 LFLSDSNHHRIIVF--DGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETV 356 (762)
Q Consensus 279 LYVADs~nhrI~v~--d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~Ti 356 (762)
|.++-+-.+|+..+ +++|.+... ...|++|.|++++ ++.||++-.. .|.++-...+.+..
T Consensus 20 la~sTYQagkL~~ig~~~~g~l~~~-------------~r~F~r~MGl~~~--~~~l~~~t~~--qiw~f~~~~n~l~~- 81 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGELDVF-------------ERTFPRPMGLAVS--PQSLTLGTRY--QLWRFANVDNLLPA- 81 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcEEEE-------------eeccCccceeeee--CCeEEEEEcc--eeEEcccccccccc-
Confidence 45555556666666 345654332 2479999999997 5889998864 47777322333321
Q ss_pred eecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEE------
Q 004302 357 YPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK------ 430 (762)
Q Consensus 357 aG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~------ 430 (762)
|.. .+.. ...++-..+. . ..--.-+.|++ .++.+++.++..+++-.++..-..+-
T Consensus 82 ---~~~--~~~~-D~~yvPr~~~-----------~-TGdidiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpF 142 (335)
T TIGR03032 82 ---GQT--HPGY-DRLYVPRASY-----------V-TGDIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPF 142 (335)
T ss_pred ---ccc--CCCC-CeEEeeeeee-----------e-ccCcchhheee-cCCcEEEEECcceeEEEECCCCccccccCCcc
Confidence 110 0100 0001000000 0 00113578888 57899999999999999988755431
Q ss_pred --EE-------------EcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeE------EecCC
Q 004302 431 --EA-------------VKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSS------IAFQN 489 (762)
Q Consensus 431 --ti-------------~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav------~~~~g 489 (762)
.+ ..|.++.++.+++. +.+..|=....+++...+-.-+.-+..++ --.+|
T Consensus 143 Is~la~eDRCHLNGlA~~~g~p~yVTa~~~s---------D~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdg 213 (335)
T TIGR03032 143 ISKLAPEDRCHLNGMALDDGEPRYVTALSQS---------DVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQG 213 (335)
T ss_pred ccccCccCceeecceeeeCCeEEEEEEeecc---------CCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCC
Confidence 11 11333334444431 22333422222222222211110011111 12579
Q ss_pred EEEEEECCCCEEEEEECCCCcEEEEe
Q 004302 490 HILLCDIVGQRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 490 ~LYVADt~NhRIrkidl~~~~~sti~ 515 (762)
.|||+|++.++|.++|+++|....+.
T Consensus 214 rLwvldsgtGev~~vD~~~G~~e~Va 239 (335)
T TIGR03032 214 KLWLLNSGRGELGYVDPQAGKFQPVA 239 (335)
T ss_pred eEEEEECCCCEEEEEcCCCCcEEEEE
Confidence 99999999999999999988777664
No 195
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.87 E-value=0.43 Score=51.25 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=97.6
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
+--||++- +++||..-..++..+++|.+ -+.+..+-- + ....||+.| +..||++|. .++|+
T Consensus 91 FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~------------~EGWGLt~d--g~~Li~SDG-S~~L~ 152 (264)
T PF05096_consen 91 FGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-P------------GEGWGLTSD--GKRLIMSDG-SSRLY 152 (264)
T ss_dssp -EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--S------------SS--EEEEC--SSCEEEE-S-SSEEE
T ss_pred cceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEec-C------------CcceEEEcC--CCEEEEECC-ccceE
Confidence 55689997 89999999999999999995 455544422 1 134689975 789999995 78999
Q ss_pred EEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.+|+.+- .+.++.-+- + |. .+..=--+-+- +|.||--=...++|.++|
T Consensus 153 ~~dP~~f~~~~~i~V~~-----~-----------g~--------------pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 153 FLDPETFKEVRTIQVTD-----N-----------GR--------------PVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE-TTT-SEEEEEE-EE-----T-----------TE--------------E---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EECCcccceEEEEEEEE-----C-----------CE--------------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 9998764 444442110 0 10 01111123332 799999999999999999
Q ss_pred CCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEE
Q 004302 424 LASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMR 503 (762)
Q Consensus 424 ~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrk 503 (762)
+.+|.|..++.=++ +. .+.. ..........-..|+|.++..+.+||+=-.=-++..
T Consensus 202 p~tG~V~~~iDls~--------L~-~~~~---------------~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lye 257 (264)
T PF05096_consen 202 PETGKVVGWIDLSG--------LR-PEVG---------------RDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYE 257 (264)
T ss_dssp TTT-BEEEEEE-HH--------HH-HHHT---------------STTST--TTS-EEEEEEETTTTEEEEEETT-SEEEE
T ss_pred CCCCeEEEEEEhhH--------hh-hccc---------------ccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEE
Confidence 99999876542111 00 0000 000000001112468888888999998765555555
Q ss_pred EE
Q 004302 504 LN 505 (762)
Q Consensus 504 id 505 (762)
|.
T Consensus 258 V~ 259 (264)
T PF05096_consen 258 VK 259 (264)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 196
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.85 E-value=2.7 Score=47.87 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=66.8
Q ss_pred eEEEccCCCEE-EEEeC-CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe--CCCCeE
Q 004302 269 CISADESGNRL-FLSDS-NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD--SENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~L-YVADs-~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD--t~NhrI 343 (762)
..+.+|++..| |+++. ++..|+++|.. |+.. .+....| .-...+++|++..|+++- .++..|
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g------------~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG------------MTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC------------cccCcEECCCCCEEEEEEecCCCceE
Confidence 35567766666 45543 46789999874 4433 2221111 012346777666775543 234578
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEEC-CCCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINR-SFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~-gN~rI~ 420 (762)
.++|+.++.+..+.... + ..+..++++||. | |++|. +...|+
T Consensus 273 y~~d~~~~~~~~Lt~~~-----------------~------------------~~~~~~~spDG~~i~f~s~~~g~~~Iy 317 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSP-----------------A------------------IDTSPSYSPDGSQIVFESDRSGSPQLY 317 (435)
T ss_pred EEEECCCCceEEccCCC-----------------C------------------ccCceeEcCCCCEEEEEECCCCCCeEE
Confidence 88898887766653210 0 012245567764 3 44443 345899
Q ss_pred EEECCCCcEEEEE
Q 004302 421 IMDLASGEIKEAV 433 (762)
Q Consensus 421 v~d~~~g~I~ti~ 433 (762)
++|.+++.++.+.
T Consensus 318 ~~d~~g~~~~~lt 330 (435)
T PRK05137 318 VMNADGSNPRRIS 330 (435)
T ss_pred EEECCCCCeEEee
Confidence 9998888777663
No 197
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.72 E-value=0.19 Score=55.32 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=53.4
Q ss_pred cceEEEccCCCEEE-EEeCCC----cEEEEEcCCC---cE--EEEecCC-CCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 267 PGCISADESGNRLF-LSDSNH----HRIIVFDGNG---KI--LDCIGSC-PGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 267 P~gIAVD~s~g~LY-VADs~n----hrI~v~d~~G---~i--~~~iGsG-~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
=.||+.++.++++| |+|.+. -+++.++... .. +...+.. --..+|..-...-.-|.||++. .++.+||
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~-~~g~~~i 100 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP-PDGSFWI 100 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe-cCCCEEE
Confidence 37889986566665 888877 2344444321 11 1111111 0011231111122379999995 5899999
Q ss_pred EeCCC------CeEEEEeCCCCEEEEE
Q 004302 336 VDSEN------HAIRRADMGRRVLETV 356 (762)
Q Consensus 336 ADt~N------hrIRkid~~~g~I~Ti 356 (762)
++.+. ++|++++..+..+..+
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~~~~~~ 127 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGRVIRRF 127 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCcccceE
Confidence 99999 9999999886665555
No 198
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.59 E-value=0.2 Score=62.20 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=118.4
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEE-ecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDC-IGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~-iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
...+..|.++++|-..+++|-+|.+++.|.+.+.+|....+ +.. .+..|..++++|..+.+|..|++
T Consensus 476 ~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~------------~l~~~r~~~v~p~~g~~~wtd~~ 543 (877)
T KOG1215|consen 476 GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK------------DLDLPRSIAVDPEKGLMFWTDWG 543 (877)
T ss_pred ccCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec------------CCCCccceeeccccCeeEEecCC
Confidence 34578999999999999999999999999999988765332 322 23679999999999999999998
Q ss_pred -CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCC
Q 004302 340 -NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFE 417 (762)
Q Consensus 340 -NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~ 417 (762)
..+|.+-.+++....++... .+..|.|+++|- ++.+|-+|.-.+
T Consensus 544 ~~~~i~ra~~dg~~~~~l~~~----------------------------------~~~~p~glt~d~~~~~~yw~d~~~~ 589 (877)
T KOG1215|consen 544 QPPRIERASLDGSERAVLVTN----------------------------------GILWPNGLTIDYETDRLYWADAKLD 589 (877)
T ss_pred CCchhhhhcCCCCCceEEEeC----------------------------------CccCCCcceEEeecceeEEEcccCC
Confidence 55788777765555554322 145799999985 588999999888
Q ss_pred -EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEEC
Q 004302 418 -TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDI 496 (762)
Q Consensus 418 -rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt 496 (762)
.|...+.++.... +.. .. ....| .+++...+++|-.|.
T Consensus 590 ~~i~~~~~~g~~r~-~~~-~~----------------------------------~~~~p-----~~~~~~~~~iyw~d~ 628 (877)
T KOG1215|consen 590 YTIESANMDGQNRR-VVD-SE----------------------------------DLPHP-----FGLSVFEDYIYWTDW 628 (877)
T ss_pred cceeeeecCCCceE-Eec-cc----------------------------------cCCCc-----eEEEEecceeEEeec
Confidence 6777776554322 110 00 00122 455667889999999
Q ss_pred CCCEEEEEECCCCc
Q 004302 497 VGQRIMRLNRESGV 510 (762)
Q Consensus 497 ~NhRIrkidl~~~~ 510 (762)
.++-+.+.....+.
T Consensus 629 ~~~~~~~~~~~~~~ 642 (877)
T KOG1215|consen 629 SNRAISRAEKHKGS 642 (877)
T ss_pred cccceEeeecccCC
Confidence 99977777766553
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.59 E-value=1.6 Score=49.88 Aligned_cols=116 Identities=13% Similarity=0.191 Sum_probs=68.2
Q ss_pred eEEEccCCCEEEEE-e-CCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeE-EEEeCC-CCeE
Q 004302 269 CISADESGNRLFLS-D-SNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCL-YIVDSE-NHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LYVA-D-s~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~L-YVADt~-NhrI 343 (762)
.++++|++..|+++ + .++.+|+++|.++ +..... .+. ......+++|++..| |++|.. ...|
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~------------~~~~~~~wSPDG~~I~f~s~~~g~~~I 313 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGR------------SNNTEPTWFPDSQNLAYTSDQAGRPQV 313 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCC------------CCcCceEECCCCCEEEEEeCCCCCceE
Confidence 35788877788765 3 3556899999854 443322 111 012345777766666 566643 4478
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEEC--CCCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINR--SFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~--gN~rI~ 420 (762)
.++|+.++.+..+...+. .....++++||. |+.+.. +...|+
T Consensus 314 y~~d~~~g~~~~lt~~~~-----------------------------------~~~~~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 314 YKVNINGGAPQRITWEGS-----------------------------------QNQDADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred EEEECCCCCeEEeecCCC-----------------------------------CccCEEECCCCCEEEEEEccCCCceEE
Confidence 888888776666532110 112355667764 433332 335688
Q ss_pred EEECCCCcEEEE
Q 004302 421 IMDLASGEIKEA 432 (762)
Q Consensus 421 v~d~~~g~I~ti 432 (762)
++|.+++.+..+
T Consensus 359 ~~dl~~g~~~~L 370 (429)
T PRK03629 359 KQDLATGGVQVL 370 (429)
T ss_pred EEECCCCCeEEe
Confidence 999888876544
No 200
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.52 E-value=1 Score=51.30 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=67.1
Q ss_pred eEEEccCCCEEE-EEeC-CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEE-e-CCCCeE
Q 004302 269 CISADESGNRLF-LSDS-NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIV-D-SENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LY-VADs-~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVA-D-t~NhrI 343 (762)
..+.+|++..|+ +++. +++.|+++|.+ |+....... .+. -...+++|++..|+++ + .++..|
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g~------------~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RGI------------NGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CCC------------ccCceECCCCCEEEEEEeCCCCceE
Confidence 345677666665 4433 45679998885 443322211 110 1245778777777654 3 345689
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEEC-CCCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINR-SFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~-gN~rI~ 420 (762)
+++|+.++.+..+.... + .....++++||. | |.+|. ++..|+
T Consensus 275 y~~d~~~g~~~~lt~~~-----------------~------------------~~~~~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHF-----------------G------------------IDTEPTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred EEEECCCCCeEECccCC-----------------C------------------CccceEECCCCCEEEEEECCCCCceEE
Confidence 99998888766553210 0 112346677765 3 44554 345799
Q ss_pred EEECCCCcEEEE
Q 004302 421 IMDLASGEIKEA 432 (762)
Q Consensus 421 v~d~~~g~I~ti 432 (762)
+++.+++.+..+
T Consensus 320 ~~dl~~g~~~~l 331 (433)
T PRK04922 320 RVAASGGSAERL 331 (433)
T ss_pred EEECCCCCeEEe
Confidence 999887776554
No 201
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.50 E-value=0.027 Score=48.37 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=34.0
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHh
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMK 173 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k 173 (762)
|+-|+++||++| .+..+.|.++. .++ +.++-|+.+. +...+.+++++
T Consensus 1 V~~f~~~~Cp~C-------~~~~~~L~~~~--i~~~~~~~~v~~~~------~~~~~~~~l~~ 48 (84)
T TIGR02180 1 VVVFSKSYCPYC-------KKAKEILAKLN--VKPAYEVVELDQLS------NGSEIQDYLEE 48 (84)
T ss_pred CEEEECCCChhH-------HHHHHHHHHcC--CCCCCEEEEeeCCC------ChHHHHHHHHH
Confidence 467999999866 99999999986 333 7777776654 44566666555
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.48 E-value=1.6 Score=49.84 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=67.1
Q ss_pred eEEEccCCCEEE-EEe-CCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe--CCCCeE
Q 004302 269 CISADESGNRLF-LSD-SNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD--SENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LY-VAD-s~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD--t~NhrI 343 (762)
..+.+|++..|+ ++. .++..|++++.+ |+... +....+. -...+++|++..|+++- .++..|
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~------------~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRH------------NGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCC------------cCCeEECCCCCEEEEEEcCCCCcEE
Confidence 456676665554 443 345567777764 33222 2111110 12357888787888763 344579
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEECC-CCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINRS-FETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~g-N~rI~ 420 (762)
..+|.+++.+..+.... ......++++||. | |++|.+ ..+|+
T Consensus 270 ~~~d~~tg~~~~lt~~~-----------------------------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 270 YVMDLASGQIRQVTDGR-----------------------------------SNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred EEEECCCCCEEEccCCC-----------------------------------CCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 99998887766552110 0123456777775 3 566653 45899
Q ss_pred EEECCCCcEEEE
Q 004302 421 IMDLASGEIKEA 432 (762)
Q Consensus 421 v~d~~~g~I~ti 432 (762)
+++.+++.+.++
T Consensus 315 ~~d~~~g~~~~l 326 (429)
T PRK03629 315 KVNINGGAPQRI 326 (429)
T ss_pred EEECCCCCeEEe
Confidence 999988876655
No 203
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.45 E-value=1.4 Score=50.69 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=67.4
Q ss_pred eEEEccCCCEEE-EEe-CCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CCCeE
Q 004302 269 CISADESGNRLF-LSD-SNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--ENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LY-VAD-s~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~NhrI 343 (762)
..+.+|++..|+ +++ .++.+|+++|.. |+... +....+. -...+++|++..|+++-. ++..|
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~------------~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGI------------NGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCC------------cCCeeECCCCCEEEEEEeCCCCeEE
Confidence 356777777775 444 345689999874 44322 2211110 123577887777876532 34579
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEEC-CCCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINR-SFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~-gN~rI~ 420 (762)
.++|+.++.+..+.... + .....++++||. | |.++. ++..|+
T Consensus 289 y~~dl~tg~~~~lt~~~-----------------~------------------~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 289 YVVDIATKALTRITRHR-----------------A------------------IDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred EEEECCCCCeEECccCC-----------------C------------------CccceEECCCCCEEEEEECCCCCceEE
Confidence 99998887766653110 0 122345666754 4 34443 456899
Q ss_pred EEECCCCcEEEE
Q 004302 421 IMDLASGEIKEA 432 (762)
Q Consensus 421 v~d~~~g~I~ti 432 (762)
++|.+++.+..+
T Consensus 334 ~~dl~~g~~~~L 345 (448)
T PRK04792 334 RVNLASGKVSRL 345 (448)
T ss_pred EEECCCCCEEEE
Confidence 999988876655
No 204
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.37 E-value=1.8 Score=48.29 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=64.6
Q ss_pred eEEEccCCCEEEEEeC--CCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE-EeC-CCCeE
Q 004302 269 CISADESGNRLFLSDS--NHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI-VDS-ENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LYVADs--~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV-ADt-~NhrI 343 (762)
.++++|++..||++.. ++..|+.++.++ +....... .+. ....++++++..|++ +|. ++..|
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~------------~~~~~~s~dg~~l~~~s~~~g~~~i 304 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGI------------DTEPSWSPDGKSIAFTSDRGGSPQI 304 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC-CCC------------CCCEEECCCCCEEEEEECCCCCceE
Confidence 3567776677876543 456799988754 33332211 110 112345555666654 443 34478
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECC--CCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRS--FETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~g--N~rI~ 420 (762)
.++++.++.+..+...+ .....++++++|. |+++... ..+|+
T Consensus 305 y~~d~~~~~~~~l~~~~-----------------------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 305 YMMDADGGEVRRLTFRG-----------------------------------GYNASPSWSPDGDLIAFVHREGGGFNIA 349 (417)
T ss_pred EEEECCCCCEEEeecCC-----------------------------------CCccCeEECCCCCEEEEEEccCCceEEE
Confidence 88888776655553211 0123456677764 4555443 34889
Q ss_pred EEECCCCcEEEE
Q 004302 421 IMDLASGEIKEA 432 (762)
Q Consensus 421 v~d~~~g~I~ti 432 (762)
++|..++....+
T Consensus 350 ~~d~~~~~~~~l 361 (417)
T TIGR02800 350 VMDLDGGGERVL 361 (417)
T ss_pred EEeCCCCCeEEc
Confidence 999887765433
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.33 E-value=1.7 Score=49.44 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=65.1
Q ss_pred eEEEccCCCEEEEE-e-CCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE-EeC-CCCeE
Q 004302 269 CISADESGNRLFLS-D-SNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI-VDS-ENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LYVA-D-s~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV-ADt-~NhrI 343 (762)
..+++|++..|+++ + .++..|+++|.+ |+... +-...+ .....++++++..|++ +|. ++..|
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~------------~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG------------IDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCC------------CccceEECCCCCEEEEEECCCCCceE
Confidence 45677767777653 3 356689999884 44333 211110 1223567776666655 443 34468
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECC--CCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRS--FETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~g--N~rI~ 420 (762)
.++++.++.+..+.-.| .....++++++|. |+++... ..+|+
T Consensus 319 y~~dl~~g~~~~lt~~g-----------------------------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~ 363 (433)
T PRK04922 319 YRVAASGGSAERLTFQG-----------------------------------NYNARASVSPDGKKIAMVHGSGGQYRIA 363 (433)
T ss_pred EEEECCCCCeEEeecCC-----------------------------------CCccCEEECCCCCEEEEEECCCCceeEE
Confidence 88887766655542111 0122457777764 5554432 34799
Q ss_pred EEECCCCcEEE
Q 004302 421 IMDLASGEIKE 431 (762)
Q Consensus 421 v~d~~~g~I~t 431 (762)
++|..++....
T Consensus 364 v~d~~~g~~~~ 374 (433)
T PRK04922 364 VMDLSTGSVRT 374 (433)
T ss_pred EEECCCCCeEE
Confidence 99988877553
No 206
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.32 E-value=2.1 Score=48.42 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=67.7
Q ss_pred ceEEEccCCCEE-EEEeC-CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEE-e-CCCCe
Q 004302 268 GCISADESGNRL-FLSDS-NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIV-D-SENHA 342 (762)
Q Consensus 268 ~gIAVD~s~g~L-YVADs-~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVA-D-t~Nhr 342 (762)
...+.+|++..| |+++. ++..|++++.+ |+..... ...|. ....+++|++..|+++ + .++..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g~------------~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEGL------------NGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCCC------------cCCeEECCCCCEEEEEEccCCCce
Confidence 445677777777 56654 45688888885 4433322 11110 1235677777777653 3 34458
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEEC-CCCEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINR-SFETL 419 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~-gN~rI 419 (762)
|.++|+.++.+..+.... + ......+++||. | |.+|. ++..|
T Consensus 269 Iy~~d~~~~~~~~lt~~~-----------------~------------------~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHP-----------------A------------------IDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred EEEEECCCCCeEEcccCC-----------------C------------------CcCCeEECCCCCEEEEEECCCCCceE
Confidence 999998887766553210 0 012234566654 4 44454 34589
Q ss_pred EEEECCCCcEEEE
Q 004302 420 WIMDLASGEIKEA 432 (762)
Q Consensus 420 ~v~d~~~g~I~ti 432 (762)
++++..++.+..+
T Consensus 314 y~~d~~~g~~~~l 326 (430)
T PRK00178 314 YKVNVNGGRAERV 326 (430)
T ss_pred EEEECCCCCEEEe
Confidence 9999888876655
No 207
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.29 E-value=0.055 Score=57.79 Aligned_cols=104 Identities=10% Similarity=0.013 Sum_probs=76.5
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC-Cc
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI-TF 178 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i-tf 178 (762)
.-.+.++..++=|+.|+..-|+.| .+..|.|+.+.++|+ +.|++|++|.. ++ .|
T Consensus 142 ~~~i~~la~~~gL~fFy~~~C~~C-------~~~apil~~fa~~yg-i~v~~VS~DG~-----------------~~p~f 196 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRGKSPIS-------QKMAPVIQAFAKEYG-ISVIPISVDGT-----------------LIPGL 196 (256)
T ss_pred HHHHHHHHhceeEEEEECCCCchh-------HHHHHHHHHHHHHhC-CeEEEEecCCC-----------------CCCCC
Confidence 345567788999999999999755 999999999999997 99999999861 11 14
Q ss_pred ceeeCCCCccccccCc---e-EEEEcCC-CCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 179 PILLSNKNFPQMENGA---C-YLLSKDF-GNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 179 PVl~D~~~~~~~~ygv---~-t~lId~~-G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
|....+.+ ....+|+ | .||++++ ++..-...|.++.++|...|..+...-
T Consensus 197 p~~~~d~g-qa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 197 PNSRSDSG-QAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCccCChH-HHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 43332222 1223343 3 5888888 666667899999999999998877654
No 208
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.22 E-value=0.75 Score=57.27 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=117.6
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEE-ecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDC-IGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~-iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
..+..+.++..++.+|-+|..-.+|......|..... .+.| ...|.|+++|...+++|-+|.+++.|
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g------------~~~~~~lavD~~~~~~y~tDe~~~~i 504 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDG------------LCIPEGLAVDWIGDNIYWTDEGNCLI 504 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccC------------ccccCcEEEEeccCCceecccCCcee
Confidence 4555555666678999999999999999887755543 4332 35599999999999999999999999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECC-CCEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRS-FETLWI 421 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~g-N~rI~v 421 (762)
.+.++.+..-.+++... +..|..+++++. |.+|..|.+ ..+|-+
T Consensus 505 ~v~~~~g~~~~vl~~~~----------------------------------l~~~r~~~v~p~~g~~~wtd~~~~~~i~r 550 (877)
T KOG1215|consen 505 EVADLDGSSRKVLVSKD----------------------------------LDLPRSIAVDPEKGLMFWTDWGQPPRIER 550 (877)
T ss_pred EEEEccCCceeEEEecC----------------------------------CCCccceeeccccCeeEEecCCCCchhhh
Confidence 99987665545554321 346999999985 999999988 456665
Q ss_pred EECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCC-E
Q 004302 422 MDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQ-R 500 (762)
Q Consensus 422 ~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~Nh-R 500 (762)
-.+++.....++.. | ...| .+.+++...+.+|-+|...+ -
T Consensus 551 a~~dg~~~~~l~~~--------~----------------------------~~~p---~glt~d~~~~~~yw~d~~~~~~ 591 (877)
T KOG1215|consen 551 ASLDGSERAVLVTN--------G----------------------------ILWP---NGLTIDYETDRLYWADAKLDYT 591 (877)
T ss_pred hcCCCCCceEEEeC--------C----------------------------ccCC---CcceEEeecceeEEEcccCCcc
Confidence 55554433332110 0 0122 34666777889999999999 7
Q ss_pred EEEEECCCCcEE
Q 004302 501 IMRLNRESGVCS 512 (762)
Q Consensus 501 Irkidl~~~~~s 512 (762)
|.+++.++..-.
T Consensus 592 i~~~~~~g~~r~ 603 (877)
T KOG1215|consen 592 IESANMDGQNRR 603 (877)
T ss_pred eeeeecCCCceE
Confidence 999998887665
No 209
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.21 E-value=0.43 Score=52.51 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=80.3
Q ss_pred CcceEEEccCCCEEEEEeCCC------cEEEEEcCCCcEEEEecCCCCCCCCc--ccccccC-CcceEEEecCCCeEEEE
Q 004302 266 FPGCISADESGNRLFLSDSNH------HRIIVFDGNGKILDCIGSCPGFEDGE--FESSKLM-RPAASFYHKDDDCLYIV 336 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~n------hrI~v~d~~G~i~~~iGsG~G~~DG~--~~~a~fn-~P~GIavd~~~g~LYVA 336 (762)
-|-+|++. .++.+||++.+. ++|++++.+|++...+.--..+.-.. ....+-| ...||++++++..||++
T Consensus 86 D~Egi~~~-~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVP-PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEe-cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 78899994 689999999999 99999999998876552211110000 0111222 37899999876668887
Q ss_pred eCCC---------------CeEEEEeCCC-C-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcc
Q 004302 337 DSEN---------------HAIRRADMGR-R-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 399 (762)
Q Consensus 337 Dt~N---------------hrIRkid~~~-g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~ 399 (762)
-... .||.++|... + .+..+ .|.+++.. ....-..+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~--------------~y~ld~~~------------~~~~~~~is 218 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEY--------------AYPLDPPP------------TAPGDNGIS 218 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEE--------------EEeCCccc------------cccCCCCce
Confidence 5322 3566666543 2 11111 00000000 000234688
Q ss_pred eEEEcCCCcEEEEECCC-------CEEEEEECC
Q 004302 400 HLMKSEDDNLLIINRSF-------ETLWIMDLA 425 (762)
Q Consensus 400 gIavd~dG~LYVAD~gN-------~rI~v~d~~ 425 (762)
.++..+++.|||-.+.+ .+|+.++..
T Consensus 219 d~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 219 DIAALPDGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred eEEEECCCcEEEEEccCCCCccceEEEEEEEcc
Confidence 88888899999999873 356666654
No 210
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.18 E-value=0.015 Score=55.79 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=42.5
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+..+..+.-+|-|-.+||++| +..+|.|.++.+..|++.|=-+..++ + .+.+.++
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~-------~~~vP~l~kiae~~p~i~~~~i~rd~------~----~el~~~~-------- 90 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDC-------ARNVPVLAKIAEANPNIEVRIILRDE------N----KELMDQY-------- 90 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHH-------HHHHHHHHHHHHH-TTEEEEEE-HHH------H----HHHTTTT--------
T ss_pred HHhcCCCcEEEEEECCCchhH-------HHHHHHHHHHHHhCCCCeEEEEEecC------C----hhHHHHH--------
Confidence 345567788889999999998 99999999999998874443333332 1 1222111
Q ss_pred CCCCccccccCceE-EEEcCCCCEEEEecC
Q 004302 183 SNKNFPQMENGACY-LLSKDFGNARVFHEN 211 (762)
Q Consensus 183 D~~~~~~~~ygv~t-~lId~~G~iv~~~~G 211 (762)
.......+|+ +++|.+|+.+.+...
T Consensus 91 ----lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 91 ----LTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp ----TT-SS--SSEEEEE-TT--EEEEEES
T ss_pred ----HhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 0012234775 788888888876543
No 211
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.01 E-value=1.2 Score=53.44 Aligned_cols=177 Identities=19% Similarity=0.234 Sum_probs=110.3
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRk 345 (762)
.+|||||++.-+...+..+=-|.+++. +|+.+.++-+-+| | .++++++ .+.+.++-+....||+
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-------------PVs~l~f~~-~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-------------PVSGLSFSP-DGSLLASGSWDKTVRI 504 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-------------cceeeEEcc-ccCeEEeccccceEEE
Confidence 579999877766677777888999998 8999988744233 5 6789998 5667788888999999
Q ss_pred EeCC--CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEECCCCEEEEE
Q 004302 346 ADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIM 422 (762)
Q Consensus 346 id~~--~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD~gN~rI~v~ 422 (762)
+|.- ++++.|+.-.. .-.++++.|+|. |-|| +-++.|-.|
T Consensus 505 W~if~s~~~vEtl~i~s------------------------------------dvl~vsfrPdG~elaVa-TldgqItf~ 547 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRS------------------------------------DVLAVSFRPDGKELAVA-TLDGQITFF 547 (893)
T ss_pred EEeeccCceeeeEeecc------------------------------------ceeEEEEcCCCCeEEEE-EecceEEEE
Confidence 9864 34777773221 134677778765 4444 456788888
Q ss_pred ECCCCcE-EEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEE-ecCCEEEEEECCCCE
Q 004302 423 DLASGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI-AFQNHILLCDIVGQR 500 (762)
Q Consensus 423 d~~~g~I-~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~-~~~g~LYVADt~NhR 500 (762)
|...+.. .+| .|.... ..|. .. .|-+. ...+..+.++ ..+. ..+|..++|--.++-
T Consensus 548 d~~~~~q~~~I-dgrkD~--~~gR-----~~------~D~~t----a~~sa~~K~F----tti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 548 DIKEAVQVGSI-DGRKDL--SGGR-----KE------TDRIT----AENSAKGKTF----TTICYSADGKCILAGGESNS 605 (893)
T ss_pred Ehhhceeeccc-cchhhc--cccc-----cc------cceee----hhhcccCCce----EEEEEcCCCCEEEecCCccc
Confidence 8765432 122 221100 0011 00 00000 0001112332 2333 467888888888899
Q ss_pred EEEEECCCCcEE-EEeec
Q 004302 501 IMRLNRESGVCS-NFQFS 517 (762)
Q Consensus 501 Irkidl~~~~~s-ti~~s 517 (762)
|..++..++++. .|+++
T Consensus 606 iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 606 ICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred EEEEECchhheeeeEEec
Confidence 999999888766 55554
No 212
>PTZ00421 coronin; Provisional
Probab=95.01 E-value=9.7 Score=44.62 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=76.4
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCC-CcE-------EEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGN-GKI-------LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i-------~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
.+|+++|.+++++++=+.++.|+++|.. +.. +..+ .|. -..-..++++|..++++++=+.
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L---~gH---------~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL---QGH---------TKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe---cCC---------CCcEEEEEeCcCCCCEEEEEeC
Confidence 5678887556666666778889988863 221 1111 111 1224568888865567776677
Q ss_pred CCeEEEEeCCCCEEE-EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCE
Q 004302 340 NHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFET 418 (762)
Q Consensus 340 NhrIRkid~~~g~I~-TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~r 418 (762)
.+.|+.+|+.++... ++.+.. ..-.+|++.++|.++++-..++.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~-----------------------------------~~V~sla~spdG~lLatgs~Dg~ 191 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHS-----------------------------------DQITSLEWNLDGSLLCTTSKDKK 191 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCC-----------------------------------CceEEEEEECCCCEEEEecCCCE
Confidence 889999998876433 331110 12457888889999888888999
Q ss_pred EEEEECCCCcE
Q 004302 419 LWIMDLASGEI 429 (762)
Q Consensus 419 I~v~d~~~g~I 429 (762)
|++||+.++..
T Consensus 192 IrIwD~rsg~~ 202 (493)
T PTZ00421 192 LNIIDPRDGTI 202 (493)
T ss_pred EEEEECCCCcE
Confidence 99999987764
No 213
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.98 E-value=0.68 Score=55.08 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCcceEEEcCCC-cEEEEECCCCEEEEEECCCC
Q 004302 396 IFPWHLMKSEDD-NLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 396 ~~P~gIavd~dG-~LYVAD~gN~rI~v~d~~~g 427 (762)
++||||+++||| ++||+....+.|-++|.+..
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 479999999996 59999999999999998653
No 214
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=94.98 E-value=1.3 Score=50.21 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=76.9
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEE-EEEc---CCCcEEEE--ecC---CCCCCCCcccccccCCcceEEEecCCCeEE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRI-IVFD---GNGKILDC--IGS---CPGFEDGEFESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI-~v~d---~~G~i~~~--iGs---G~G~~DG~~~~a~fn~P~GIavd~~~g~LY 334 (762)
.++=.-|+++| +|.|||+--.+.-- +.-| ..|+++.. .|. ...+.....-+.-+.+|+|++++|..+.||
T Consensus 176 ~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 176 HHFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred CcCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 44555699997 56999986544111 1111 13444321 111 111111112223467899999999879999
Q ss_pred EEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCc-------cCCCCCCC-----CCCcceEE
Q 004302 335 IVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTK-------SEKLDPQS-----LIFPWHLM 402 (762)
Q Consensus 335 VADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~-------~~~~~~~~-----L~~P~gIa 402 (762)
++|-+...++--| .+..+ -.| ..++|-.-..|. +.++. .....+-. --.|.|++
T Consensus 255 ~~e~g~d~~~~~D----eln~i-~~G-------~nYGWP~~~~G~--~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGma 320 (399)
T COG2133 255 TTEHGPDALRGPD----ELNSI-RPG-------KNYGWPYAYFGQ--NYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMA 320 (399)
T ss_pred EEecCCCcccCcc----ccccc-ccC-------CccCCceeccCc--ccCccccCCCcccccccCCceeeccccccceeE
Confidence 9998886663222 33333 112 112232222111 00000 00001001 12469999
Q ss_pred EcCC-------CcEEEEECCCCEEEEEECCCC
Q 004302 403 KSED-------DNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 403 vd~d-------G~LYVAD~gN~rI~v~d~~~g 427 (762)
+... |.+||+--+.-.+.+++.+++
T Consensus 321 Fy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~ 352 (399)
T COG2133 321 FYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGN 352 (399)
T ss_pred EecCCcCccccCcEEEEeecceeEEEeccCCC
Confidence 9843 689999988877777777665
No 215
>PTZ00420 coronin; Provisional
Probab=94.96 E-value=8.4 Score=45.98 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=77.9
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCC-C-cEEEEecC----CCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGN-G-KILDCIGS----CPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G-~i~~~iGs----G~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
-..|+.+|.+++++++=+..+.|+++|.. + .....+.. -.+ .-..-..++++|++..++++=+..
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g---------H~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG---------HKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec---------CCCcEEEEEECCCCCeEEEEEeCC
Confidence 46677887556677777778889988863 2 21111000 011 112346788888666666666667
Q ss_pred CeEEEEeCCCCEEE-EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~I~-TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
+.|+.+|+.++... ++. .+ .....++++++|.++++-...+.|
T Consensus 148 gtIrIWDl~tg~~~~~i~-~~-----------------------------------~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN-MP-----------------------------------KKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred CeEEEEECCCCcEEEEEe-cC-----------------------------------CcEEEEEECCCCCEEEEEecCCEE
Confidence 89999998766432 221 00 125688999999999988888899
Q ss_pred EEEECCCCcEE
Q 004302 420 WIMDLASGEIK 430 (762)
Q Consensus 420 ~v~d~~~g~I~ 430 (762)
++||+.++.+.
T Consensus 192 rIwD~Rsg~~i 202 (568)
T PTZ00420 192 HIIDPRKQEIA 202 (568)
T ss_pred EEEECCCCcEE
Confidence 99999988654
No 216
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=94.95 E-value=0.064 Score=40.03 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=31.5
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRR 351 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g 351 (762)
.+..|.|+++|+.++.||.+|+..+.|.+.++++.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 56789999999999999999999999999988653
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.92 E-value=2.7 Score=48.32 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred EEEccCCCEEEEE-e-CCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE-EeC-CCCeEE
Q 004302 270 ISADESGNRLFLS-D-SNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI-VDS-ENHAIR 344 (762)
Q Consensus 270 IAVD~s~g~LYVA-D-s~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV-ADt-~NhrIR 344 (762)
.+.+|++..|+++ + .++..|+++|.++ +..... .+. ......++++++..|++ ++. ++..|.
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt-~~~------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT-RHR------------AIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc-cCC------------CCccceEECCCCCEEEEEECCCCCceEE
Confidence 5677777778654 3 3456799998854 433322 111 11233466776666655 443 345788
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECC--CCEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRS--FETLWI 421 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~g--N~rI~v 421 (762)
++|+.++.+..+.-.+ . ...+.++++|| .||++... ..+|++
T Consensus 334 ~~dl~~g~~~~Lt~~g------------------~-----------------~~~~~~~SpDG~~l~~~~~~~g~~~I~~ 378 (448)
T PRK04792 334 RVNLASGKVSRLTFEG------------------E-----------------QNLGGSITPDGRSMIMVNRTNGKFNIAR 378 (448)
T ss_pred EEECCCCCEEEEecCC------------------C-----------------CCcCeeECCCCCEEEEEEecCCceEEEE
Confidence 8888777666552111 0 01223567775 45555443 347888
Q ss_pred EECCCCcEEEE
Q 004302 422 MDLASGEIKEA 432 (762)
Q Consensus 422 ~d~~~g~I~ti 432 (762)
+|.+++.++.+
T Consensus 379 ~dl~~g~~~~l 389 (448)
T PRK04792 379 QDLETGAMQVL 389 (448)
T ss_pred EECCCCCeEEc
Confidence 99888876543
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.91 E-value=2.3 Score=48.48 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=66.2
Q ss_pred eEEEccCCCEEEE-Ee-CCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEE-e-CCCCeE
Q 004302 269 CISADESGNRLFL-SD-SNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIV-D-SENHAI 343 (762)
Q Consensus 269 gIAVD~s~g~LYV-AD-s~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVA-D-t~NhrI 343 (762)
..+.+|++..|+. ++ .++..|+++|.+ |+....... .| .-...+++|++..|+++ + .++.+|
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g------------~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG------------SNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC------------CccceEECCCCCEEEEEEccCCCceE
Confidence 3567777777754 43 345679999984 444333211 11 01246778877777653 3 345678
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEEC-CCCEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINR-SFETLW 420 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~-gN~rI~ 420 (762)
..+|..++.+..+.... + .....++++||. | |++|. ++..|+
T Consensus 267 y~~d~~~~~~~~lt~~~-----------------~------------------~~~~~~wSpDG~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 267 YTVNADGSGLRRLTQSS-----------------G------------------IDTEPFFSPDGRSIYFTSDRGGAPQIY 311 (427)
T ss_pred EEEECCCCCcEECCCCC-----------------C------------------CCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence 88887766554442110 0 011235677775 3 45554 456788
Q ss_pred EEECCCCcEEEE
Q 004302 421 IMDLASGEIKEA 432 (762)
Q Consensus 421 v~d~~~g~I~ti 432 (762)
+++.+++....+
T Consensus 312 ~~~~~~g~~~~l 323 (427)
T PRK02889 312 RMPASGGAAQRV 323 (427)
T ss_pred EEECCCCceEEE
Confidence 888877765554
No 219
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.071 Score=59.87 Aligned_cols=90 Identities=8% Similarity=-0.102 Sum_probs=58.4
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
.+++.++.|||+||++| .+-+|...++...+.+ +.+..|+.+ ......+++++.
T Consensus 46 ~~~~~~v~fyapwc~~c-------~~l~~~~~~~~~~l~~~~~~~~vd~~----------~~~~~~~~y~i~-------- 100 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHC-------KKLAPTYKKLAKALKGKVKIGAVDCD----------EHKDLCEKYGIQ-------- 100 (383)
T ss_pred cCCceEEEEECCCCcch-------hhhchHHHHHHHHhcCceEEEEeCch----------hhHHHHHhcCCc--------
Confidence 47899999999999866 9999999999999998 666666433 344555555553
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
|-||+.+-..|.......|..+.+.+...+...+..
T Consensus 101 -------gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 101 -------GFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred -------cCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhcc
Confidence 223333333333333345566666666666655554
No 220
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=94.76 E-value=0.34 Score=56.99 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=56.3
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCc-------------------EEEEEcCCCc--------EEE-EecCCC----CC
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHH-------------------RIIVFDGNGK--------ILD-CIGSCP----GF 308 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nh-------------------rI~v~d~~G~--------i~~-~iGsG~----G~ 308 (762)
.+.|..|-+|++++.++.+|++.+++. +|++++.++. +.. .++..+ ..
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 468999999999999999999998877 8999987543 222 222211 11
Q ss_pred CCCcccccccCCcceEEEecCCCeEEEEe-CCCC
Q 004302 309 EDGEFESSKLMRPAASFYHKDDDCLYIVD-SENH 341 (762)
Q Consensus 309 ~DG~~~~a~fn~P~GIavd~~~g~LYVAD-t~Nh 341 (762)
..+......|++|-+|++++ .++|||+. ..++
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~ 458 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDP-DGNLWIQEDGGGS 458 (524)
T ss_pred ccCcccCCCcCCCCceEECC-CCCEEEEeCCCCC
Confidence 11223356899999999998 67788865 4444
No 221
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.76 E-value=0.13 Score=54.12 Aligned_cols=82 Identities=12% Similarity=0.248 Sum_probs=60.1
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEc--C-CCcEE-----EEecCCCCCCCCcccccccCCcceEEEecCCCeEE
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFD--G-NGKIL-----DCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLY 334 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d--~-~G~i~-----~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LY 334 (762)
.+--|.|++-|.+....|+.|+.|+.|.-+| . +|.+. .-.-....+ .--.|-|+++|. +|+||
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~--------e~~~PDGm~ID~-eG~L~ 226 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF--------ESLEPDGMTIDT-EGNLY 226 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc--------CCCCCCcceEcc-CCcEE
Confidence 5667889999977789999999999995555 4 45433 111111000 113499999995 89999
Q ss_pred EEeCCCCeEEEEeCCCCEE
Q 004302 335 IVDSENHAIRRADMGRRVL 353 (762)
Q Consensus 335 VADt~NhrIRkid~~~g~I 353 (762)
||-....+|+++|+.+|.+
T Consensus 227 Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred EEEecCcEEEEECCCCCcE
Confidence 9999999999999988754
No 222
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.67 E-value=0.11 Score=55.32 Aligned_cols=103 Identities=11% Similarity=-0.000 Sum_probs=76.0
Q ss_pred cccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC-Ccc
Q 004302 101 IHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI-TFP 179 (762)
Q Consensus 101 v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i-tfP 179 (762)
-.+.++..++-|+.|+.+.|+.| .+.-|.|+.+.++|+ +.|++|++|.. ++ .||
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C-------~~~aPil~~fa~~yg-~~v~~VS~DG~-----------------~~p~fp 190 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPID-------GQLAQVINDFRDTYG-LSVIPVSVDGV-----------------INPLLP 190 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchh-------HHHHHHHHHHHHHhC-CeEEEEecCCC-----------------CCCCCC
Confidence 34566778899999999999755 999999999999986 89999999861 11 244
Q ss_pred eeeCCCCccccccCce----EEEEcCC-CCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 180 ILLSNKNFPQMENGAC----YLLSKDF-GNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~----t~lId~~-G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
....+.+. ...+++. +||++++ ++..-...|.++.++|.+.|..+...-
T Consensus 191 ~~~~d~gq-a~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 191 DSRTDQGQ-AQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred CCccChhH-HHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 43322221 2334443 5888877 466678899999999999998776654
No 223
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.63 E-value=0.79 Score=52.96 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=55.4
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
.|..|.+|++.| +++|||+....++|++++..++....+.+... .. ......
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~--v~-------------------------~~~ge~ 79 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPE--IV-------------------------NDAQHN 79 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCc--ee-------------------------ccCCCC
Confidence 378899999998 68999999878999999876665444433210 00 001134
Q ss_pred CcceEEEcCC-------CcEEEEECC---------CCEEEEEECC
Q 004302 397 FPWHLMKSED-------DNLLIINRS---------FETLWIMDLA 425 (762)
Q Consensus 397 ~P~gIavd~d-------G~LYVAD~g---------N~rI~v~d~~ 425 (762)
.+.||+++|+ +.|||+-+. ..+|.++..+
T Consensus 80 GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 80 GLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred ceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEec
Confidence 6889999855 479998532 4678777654
No 224
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=94.57 E-value=0.078 Score=39.57 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=32.6
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK 297 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~ 297 (762)
.+..|.|+|+|+.+++||-+|...+.|.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 68899999999999999999999999999998874
No 225
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.55 E-value=0.82 Score=49.63 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=58.2
Q ss_pred cceEEEecCCCeEEEEeCCC------------CeEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCcc
Q 004302 321 PAASFYHKDDDCLYIVDSEN------------HAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS 387 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~N------------hrIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~ 387 (762)
.+++.+|. .++|||.|++. -+|..||+.++.+ .++ --...-..
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~-~~p~~~~~---------------------- 58 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRY-PFPPDIAP---------------------- 58 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEE-E--CCCS-----------------------
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEE-ECChHHcc----------------------
Confidence 46899995 89999999885 3899999988754 444 22100000
Q ss_pred CCCCCCCCCCcceEEEcC------CCcEEEEECCCCEEEEEECCCCcEEEEEcC
Q 004302 388 EKLDPQSLIFPWHLMKSE------DDNLLIINRSFETLWIMDLASGEIKEAVKG 435 (762)
Q Consensus 388 ~~~~~~~L~~P~gIavd~------dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G 435 (762)
.-.+-..|++|. ++.+||+|.+..-|.++|..++...++..+
T Consensus 59 ------~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 59 ------PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp ------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred ------cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 011345677775 258999999999999999999988777544
No 226
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.53 E-value=0.23 Score=46.98 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=40.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCC---cc
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYIT---FP 179 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it---fP 179 (762)
+.+.|||.|.|+|| +| -+ .|+.++|..+|.. +.|--|..++ + ....-.+..++++|+ ||
T Consensus 17 ~~~~vlV~F~A~~P------wc--~k-~~~~~~LA~e~~~aa~~v~lakVd~~d-~----~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 17 KFKYSLVKFDTAYP------YG--EK-HEAFTRLAESSASATDDLLVAEVGIKD-Y----GEKLNMELGERYKLDKESYP 82 (116)
T ss_pred cCCcEEEEEeCCCC------CC--CC-hHHHHHHHHHHHhhcCceEEEEEeccc-c----cchhhHHHHHHhCCCcCCCC
Confidence 46889999999773 55 33 5999999988842 5555555532 1 111235788899985 88
Q ss_pred ee
Q 004302 180 IL 181 (762)
Q Consensus 180 Vl 181 (762)
.+
T Consensus 83 Tl 84 (116)
T cd03007 83 VI 84 (116)
T ss_pred EE
Confidence 54
No 227
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.47 E-value=3.5 Score=47.55 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=84.0
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-C-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-N-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
.-.++++.+ ++...++=+....|+++|. + +..+.++- | ..+.-..++++++ ++++++=+..+.|
T Consensus 205 ~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---g---------H~~~v~~~~f~p~-g~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 205 GVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---G---------HSTYVTSVAFSPD-GNLLVSGSDDGTV 270 (456)
T ss_pred ceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEec---C---------CCCceEEEEecCC-CCEEEEecCCCcE
Confidence 335677775 5667777788899999998 4 46666552 2 1233588999985 5899999999999
Q ss_pred EEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 344 RRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 344 Rkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|.+|..++.. .++.+.. + .=.++++.++|+++++-...+.|++|
T Consensus 271 riWd~~~~~~~~~l~~hs-----------------~------------------~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHS-----------------D------------------GISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred EEEeccCCeEEEeeeccC-----------------C------------------ceEEEEECCCCCEEEEcCCCccEEEE
Confidence 9999987543 3443221 0 13468888999988888899999999
Q ss_pred ECCCCcE
Q 004302 423 DLASGEI 429 (762)
Q Consensus 423 d~~~g~I 429 (762)
|..++.+
T Consensus 316 d~~~~~~ 322 (456)
T KOG0266|consen 316 DLETGSK 322 (456)
T ss_pred ECCCCce
Confidence 9999884
No 228
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.42 E-value=2.3 Score=48.98 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=97.3
Q ss_pred CCccchhhhhhhhccCCCCccccc--CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcc
Q 004302 237 SGLKCTWAKQAEVLKEPHACSSVR--NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEF 313 (762)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~ 313 (762)
-++..+++++..+..-+....-.+ .+.-.+-.++++++.+ +++++=+..+.|+++|. +|+.+..+.. ..+
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~---hs~--- 289 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKG---HSD--- 289 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeec---cCC---
Confidence 444455555555444322211111 1445566889999855 89999999999999998 4677766643 111
Q ss_pred cccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE---EEeecCCCCCCCCchhhhhhhccCccccCCCccCCC
Q 004302 314 ESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE---TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKL 390 (762)
Q Consensus 314 ~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~---TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~ 390 (762)
.=.++++.++ +.++++-+..+.|+.+|..++.+. ++.+.
T Consensus 290 ------~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------------------------------- 331 (456)
T KOG0266|consen 290 ------GISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSGA------------------------------- 331 (456)
T ss_pred ------ceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccCC-------------------------------
Confidence 1366889875 445554477999999999888743 33211
Q ss_pred CCCCCCCc---ceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcC
Q 004302 391 DPQSLIFP---WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKG 435 (762)
Q Consensus 391 ~~~~L~~P---~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G 435 (762)
..| +.+.++++|...++-..++.++.||..++.....+.|
T Consensus 332 -----~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 332 -----ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred -----CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 122 5678888998888888899999999987754433333
No 229
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.40 E-value=0.93 Score=51.17 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=72.2
Q ss_pred ccCCcceEEEc--cCCCEEEE-EeCCCcEEEEEc----CCCcE----EEEecCCCCCCCCcccccccCCcceEEEecCCC
Q 004302 263 LLHFPGCISAD--ESGNRLFL-SDSNHHRIIVFD----GNGKI----LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDD 331 (762)
Q Consensus 263 ~L~~P~gIAVD--~s~g~LYV-ADs~nhrI~v~d----~~G~i----~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g 331 (762)
.+..|.|+|+. +.+|.+|+ ....++++..+- .+|++ ++.++.+ ..|.|+++|...+
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-------------sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-------------SQPEGCVVDDETG 220 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-------------S-EEEEEEETTTT
T ss_pred ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-------------CcceEEEEecccC
Confidence 35568899984 44566662 333345555442 24543 4444331 3699999999899
Q ss_pred eEEEEeCCCCeEEEEeCC--CCEEEEEe-ecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEc----
Q 004302 332 CLYIVDSENHAIRRADMG--RRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKS---- 404 (762)
Q Consensus 332 ~LYVADt~NhrIRkid~~--~g~I~Tia-G~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd---- 404 (762)
.|||++. +.-|++++.+ .+.-.++. ..+ | .++ .....||++.
T Consensus 221 ~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~-----g----------~~l---------------~aDvEGlaly~~~~ 269 (381)
T PF02333_consen 221 RLYVGEE-DVGIWRYDAEPEGGNDRTLVASAD-----G----------DGL---------------VADVEGLALYYGSD 269 (381)
T ss_dssp EEEEEET-TTEEEEEESSCCC-S--EEEEEBS-----S----------SSB----------------S-EEEEEEEE-CC
T ss_pred CEEEecC-ccEEEEEecCCCCCCcceeeeccc-----c----------ccc---------------ccCccceEEEecCC
Confidence 9999995 5789999875 22111221 111 0 011 1246788885
Q ss_pred CCCcEEEEECCCCEEEEEECCC
Q 004302 405 EDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 405 ~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
.+|+|+|++.+++...+|+.++
T Consensus 270 g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 270 GKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp C-EEEEEEEGGGTEEEEEESST
T ss_pred CCeEEEEEcCCCCeEEEEecCC
Confidence 2479999999999999999765
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.31 E-value=4.7 Score=45.96 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=38.0
Q ss_pred EEEccCCCEEEEEe--CCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEE-eC-CCCeEEE
Q 004302 270 ISADESGNRLFLSD--SNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIV-DS-ENHAIRR 345 (762)
Q Consensus 270 IAVD~s~g~LYVAD--s~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVA-Dt-~NhrIRk 345 (762)
.+++|++..|+++- .++..|+++|.++.-...+..+.+ .....+++|++..|+++ |. +...|.+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~------------~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA------------IDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC------------ccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 34555555554332 234567777764332222221111 11234666666656544 32 3347888
Q ss_pred EeCCCCEEEEE
Q 004302 346 ADMGRRVLETV 356 (762)
Q Consensus 346 id~~~g~I~Ti 356 (762)
+|.+++.+..+
T Consensus 319 ~d~~g~~~~~l 329 (435)
T PRK05137 319 MNADGSNPRRI 329 (435)
T ss_pred EECCCCCeEEe
Confidence 88877766665
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.31 E-value=3.9 Score=45.64 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=43.6
Q ss_pred EEEccCCCEEEEEeC--CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CCCeEE
Q 004302 270 ISADESGNRLFLSDS--NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--ENHAIR 344 (762)
Q Consensus 270 IAVD~s~g~LYVADs--~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~NhrIR 344 (762)
.+++|.+..|+.+.. +.+.|++++.. |+....... .+ ....++++|++..||++.. ++..|.
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~------------~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG------------MNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC------------CccceEECCCCCEEEEEECCCCCccEE
Confidence 346666666765443 34678888874 444332211 11 1233677877777877543 345799
Q ss_pred EEeCCCCEEEEE
Q 004302 345 RADMGRRVLETV 356 (762)
Q Consensus 345 kid~~~g~I~Ti 356 (762)
.+++.++....+
T Consensus 262 ~~d~~~~~~~~l 273 (417)
T TIGR02800 262 VMDLDGKQLTRL 273 (417)
T ss_pred EEECCCCCEEEC
Confidence 999877765555
No 232
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=0.72 Score=50.09 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=80.6
Q ss_pred ceEEEccCCCEEEEEeCC-CcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 268 GCISADESGNRLFLSDSN-HHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~-nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-|+|-|+.++++|++-.. --+|++++..- .+...+...+.. -..-.+..=+|+.+++..+.|+|---+.+++..
T Consensus 184 EGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~----~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~E 259 (316)
T COG3204 184 EGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA----DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLE 259 (316)
T ss_pred eeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc----ccceEeeccccceecCCCCcEEEEecCCceEEE
Confidence 489999989999988653 34555555321 111111111110 001224567899999888999999889999999
Q ss_pred EeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 346 ADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 346 id~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
+|..+..+..+.=++ |. .|+. ..+..|.|||.|.+|+|||+..-| ..++|.
T Consensus 260 vd~~G~~~~~lsL~~-----g~---------~gL~------------~dipqaEGiamDd~g~lYIvSEPn-lfy~F~ 310 (316)
T COG3204 260 VDLSGEVIELLSLTK-----GN---------HGLS------------SDIPQAEGIAMDDDGNLYIVSEPN-LFYRFT 310 (316)
T ss_pred EecCCCeeeeEEecc-----CC---------CCCc------------ccCCCcceeEECCCCCEEEEecCC-cceecc
Confidence 999887766663222 11 2332 235689999999999999998653 444443
No 233
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=94.22 E-value=0.22 Score=46.96 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=61.3
Q ss_pred ccCCCCCCEEEEEEecc----CCCCccCCCCcchhhc--HHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcC
Q 004302 102 HFFKRGGAFLVLAGRFV----DNCDSLIAGCGTVVTF--EKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEY 175 (762)
Q Consensus 102 ~Lsd~rGK~VvLnFWAt----WC~pC~~p~C~~~~em--P~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~ 175 (762)
..+.-.+|+++|+|++. ||..| +..+ |.+.++=. .++.+++.++.. .+..++...++..
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc-------~~~l~~~~v~~~ln--~~fv~w~~dv~~-----~eg~~la~~l~~~- 75 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFC-------RNTLCAPEVIEYIN--TRMLFWACSVAK-----PEGYRVSQALRER- 75 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHH-------HHHcCCHHHHHHHH--cCEEEEEEecCC-----hHHHHHHHHhCCC-
Confidence 33456799999999999 77644 5554 44444433 247778877764 1122233333333
Q ss_pred CCcceeeCCCCccccccCceEEEE---cCCCCEEEEecCCcCHHHHHHHHHHHHHh
Q 004302 176 ITFPILLSNKNFPQMENGACYLLS---KDFGNARVFHENSLDIGMLNKAVEELIMQ 228 (762)
Q Consensus 176 itfPVl~D~~~~~~~~ygv~t~lI---d~~G~iv~~~~G~~~~~~L~~~l~~ll~~ 228 (762)
+||.+ .+| +.+.+++.+..|..+.++|...|...+.+
T Consensus 76 -~~P~~---------------~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 76 -TYPFL---------------AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred -CCCEE---------------EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 34432 233 55667888999999999999999887765
No 234
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=11 Score=41.33 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=48.9
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC-CCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC-PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG-~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
..+..|..+ .+|...|+-+.+..|+.+|. +|+.+..+-+- .|- ..+.|.++.-.++.. +--++..
T Consensus 15 ~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~-----~~~~Fth~~~~~i~s-------Stk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGV-----DLACFTHHSNTVIHS-------STKEDDT 81 (311)
T ss_pred CceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccc-----cEEEEecCCceEEEc-------cCCCCCc
Confidence 356778888 46777777778889999998 89999888662 231 234555554444443 2234455
Q ss_pred EEEEeCCCC-EEEEE
Q 004302 343 IRRADMGRR-VLETV 356 (762)
Q Consensus 343 IRkid~~~g-~I~Ti 356 (762)
||..++.++ .|+.+
T Consensus 82 IryLsl~dNkylRYF 96 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYF 96 (311)
T ss_pred eEEEEeecCceEEEc
Confidence 666655433 34444
No 235
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=2.3 Score=46.34 Aligned_cols=133 Identities=12% Similarity=0.074 Sum_probs=88.1
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
.+..|--+|.|| .|-+|.+-.++..|..+|. +.++.|+-. .-........+=..|-+++++..|.|+.. ++-
T Consensus 139 ~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~-----Rs~dkgPF~-tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~ 210 (311)
T KOG1446|consen 139 NLSGRPIAAFDP-EGLIFALANGSELIKLYDL-----RSFDKGPFT-TFSITDNDEAEWTDLEFSPDGKSILLSTN-ASF 210 (311)
T ss_pred ecCCCcceeECC-CCcEEEEecCCCeEEEEEe-----cccCCCCce-eEccCCCCccceeeeEEcCCCCEEEEEeC-CCc
Confidence 455667788997 6778877777779999996 333332110 00000112334467889988888877764 556
Q ss_pred EEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 343 IRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 343 IRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
|..+|.-+|. +.++.+-. ...+.|-+-++.||+...+.-.++++|.+
T Consensus 211 ~~~lDAf~G~~~~tfs~~~--------------------------------~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYP--------------------------------NAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred EEEEEccCCcEeeeEeecc--------------------------------CCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 7888876554 44553221 11345777888899999999999999999
Q ss_pred EECCCCcEEEEEcC
Q 004302 422 MDLASGEIKEAVKG 435 (762)
Q Consensus 422 ~d~~~g~I~ti~~G 435 (762)
|+.++|.....+.|
T Consensus 259 w~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 259 WNLETGKKVAVLRG 272 (311)
T ss_pred EEcCCCcEeeEecC
Confidence 99999886555444
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.97 E-value=8.2 Score=43.64 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=42.2
Q ss_pred EEEccCCCEEEEE-e-CCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE-EeC-CCCeEEE
Q 004302 270 ISADESGNRLFLS-D-SNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI-VDS-ENHAIRR 345 (762)
Q Consensus 270 IAVD~s~g~LYVA-D-s~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV-ADt-~NhrIRk 345 (762)
.+++|++..|+++ + .++..|+++|.++.-...+-...+ ......+++++..||+ +|. ++..|.+
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~------------~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA------------IDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC------------CcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 5677767777643 3 455689999885433222211111 1122356666666655 443 3457888
Q ss_pred EeCCCCEEEEE
Q 004302 346 ADMGRRVLETV 356 (762)
Q Consensus 346 id~~~g~I~Ti 356 (762)
+++.++.+..+
T Consensus 316 ~d~~~g~~~~l 326 (430)
T PRK00178 316 VNVNGGRAERV 326 (430)
T ss_pred EECCCCCEEEe
Confidence 88877766555
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.88 E-value=7.3 Score=44.37 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred eEEEccCCCEEEEE--eCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE-EeC-CCCeEE
Q 004302 269 CISADESGNRLFLS--DSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI-VDS-ENHAIR 344 (762)
Q Consensus 269 gIAVD~s~g~LYVA--Ds~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV-ADt-~NhrIR 344 (762)
..+++|++..|+++ ..++.+|+.+|.++.....+..+.+ .....++++++..|++ +|. ++..|.
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~------------~~~~~~wSpDG~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG------------IDTEPFFSPDGRSIYFTSDRGGAPQIY 311 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC------------CCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence 45677766677643 3456678888875543333322111 0122457776666654 443 344677
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEEE-C-CCCEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLIIN-R-SFETLWI 421 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVAD-~-gN~rI~v 421 (762)
+++..++....+.-.+ + +....++++||. |+.+. . +..+|++
T Consensus 312 ~~~~~~g~~~~lt~~g-----------------~------------------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 312 RMPASGGAAQRVTFTG-----------------S------------------YNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred EEECCCCceEEEecCC-----------------C------------------CcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 7777666554442111 0 011245677764 33332 2 2247999
Q ss_pred EECCCCcEEEE
Q 004302 422 MDLASGEIKEA 432 (762)
Q Consensus 422 ~d~~~g~I~ti 432 (762)
+|..++....+
T Consensus 357 ~d~~~g~~~~l 367 (427)
T PRK02889 357 QDLATGQVTAL 367 (427)
T ss_pred EECCCCCeEEc
Confidence 99888776554
No 238
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.69 E-value=4.1 Score=41.33 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=72.7
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
+..+...+++ ++.+|++.. +..|+.+|. +|+.+-....+... +...-..+....+-.+- .++.+|++.....
T Consensus 112 ~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 112 VRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPR--GSSPISSFSDINGSPVI-SDGRVYVSSGDGR- 184 (238)
T ss_dssp TB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT---SS--EEEETTEEEEEEC-CTTEEEEECCTSS-
T ss_pred cccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCC--CCcceeeecccccceEE-ECCEEEEEcCCCe-
Confidence 5556666676 778888876 789999996 79887555332110 00000022222333333 2569999987665
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
+..+|..++...- ... +..+..+....++.||+.+ ..++|+.+
T Consensus 185 ~~~~d~~tg~~~w-~~~-----------------------------------~~~~~~~~~~~~~~l~~~~-~~~~l~~~ 227 (238)
T PF13360_consen 185 VVAVDLATGEKLW-SKP-----------------------------------ISGIYSLPSVDGGTLYVTS-SDGRLYAL 227 (238)
T ss_dssp EEEEETTTTEEEE-EEC-----------------------------------SS-ECECEECCCTEEEEEE-TTTEEEEE
T ss_pred EEEEECCCCCEEE-Eec-----------------------------------CCCccCCceeeCCEEEEEe-CCCEEEEE
Confidence 5555888776432 100 1123343334578999999 78999999
Q ss_pred ECCCCcE
Q 004302 423 DLASGEI 429 (762)
Q Consensus 423 d~~~g~I 429 (762)
|..+|++
T Consensus 228 d~~tG~~ 234 (238)
T PF13360_consen 228 DLKTGKV 234 (238)
T ss_dssp ETTTTEE
T ss_pred ECCCCCE
Confidence 9999975
No 239
>PRK01742 tolB translocation protein TolB; Provisional
Probab=93.59 E-value=5.1 Score=45.61 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=64.4
Q ss_pred ceEEEccCCCEEE-EEeC-CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe--CCCCe
Q 004302 268 GCISADESGNRLF-LSDS-NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD--SENHA 342 (762)
Q Consensus 268 ~gIAVD~s~g~LY-VADs-~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD--t~Nhr 342 (762)
...+.+|++..|+ +++. +++.|+++|.. |+..... ...|. -..++++|++..|+++- .++-.
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g~------------~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRGH------------NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCCc------------cCceeECCCCCEEEEEEecCCcEE
Confidence 4467788777775 4432 35678888874 4332221 11111 01357888777777753 33446
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EE-EEEC-CCCEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LL-IINR-SFETL 419 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LY-VAD~-gN~rI 419 (762)
|..+|..++.+..+.+.. + .-...++++||. |+ ++|. ++-+|
T Consensus 274 Iy~~d~~~~~~~~lt~~~-----------------~------------------~~~~~~wSpDG~~i~f~s~~~g~~~I 318 (429)
T PRK01742 274 IYVMGANGGTPSQLTSGA-----------------G------------------NNTEPSWSPDGQSILFTSDRSGSPQV 318 (429)
T ss_pred EEEEECCCCCeEeeccCC-----------------C------------------CcCCEEECCCCCEEEEEECCCCCceE
Confidence 778888777666653210 0 123456778876 44 4443 45578
Q ss_pred EEEECCCCcE
Q 004302 420 WIMDLASGEI 429 (762)
Q Consensus 420 ~v~d~~~g~I 429 (762)
|.++..++..
T Consensus 319 ~~~~~~~~~~ 328 (429)
T PRK01742 319 YRMSASGGGA 328 (429)
T ss_pred EEEECCCCCe
Confidence 8888766654
No 240
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.52 E-value=4.6 Score=48.64 Aligned_cols=130 Identities=10% Similarity=0.164 Sum_probs=91.4
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS 338 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt 338 (762)
|.+.+..=..++++| +|.+.++-...+.|.++|. .|-....+-.- -+.=.++.++. .++..++-+
T Consensus 346 QQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteH------------ts~Vt~v~f~~-~g~~llssS 411 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEH------------TSGVTAVQFTA-RGNVLLSSS 411 (893)
T ss_pred ccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccC------------CCceEEEEEEe-cCCEEEEee
Confidence 455677778888885 7888888888999999998 45544444221 12246788885 788889999
Q ss_pred CCCeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCC
Q 004302 339 ENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE 417 (762)
Q Consensus 339 ~NhrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~ 417 (762)
-.++||.+|+... --.|+... ...+| ..||+|+.|.|.+|-.-++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P-------------------------------~p~Qf---scvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSP-------------------------------EPIQF---SCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred cCCeEEeeeecccceeeeecCC-------------------------------Cceee---eEEEEcCCCCEEEeeccce
Confidence 9999999998643 23344210 11112 4689999899888755444
Q ss_pred -EEEEEECCCCcEEEEEcCCc
Q 004302 418 -TLWIMDLASGEIKEAVKGFS 437 (762)
Q Consensus 418 -rI~v~d~~~g~I~ti~~G~g 437 (762)
.|.+|+.++|++-.+..|.-
T Consensus 458 F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred EEEEEEEeecCeeeehhcCCC
Confidence 79999999999887766654
No 241
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.67 Score=46.71 Aligned_cols=125 Identities=13% Similarity=0.182 Sum_probs=84.9
Q ss_pred CCccccCCCCC-CEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCC-HHHHHHHHHh
Q 004302 98 EDNIHFFKRGG-AFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVD-QTRLVEMLMK 173 (762)
Q Consensus 98 g~~v~Lsd~rG-K~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~-~~~v~~f~~k 173 (762)
...+.+-||-| .|.||--..-. .||-| --|+-.+.+++.+|.. +..||.++++ -+++.+ .+.+++|.+.
T Consensus 21 ~g~i~fhd~~gdSW~vLFSHPaD----FTPVC--TTElgr~Akl~pEF~KRnvKlialS~d~-vesH~~Wi~DIks~~~~ 93 (224)
T KOG0854|consen 21 VGKIKFHDYLGDSWGVLFSHPAD----FTPVC--TTELGRFAKLAPEFDKRNVKLIALSVDD-VESHKDWIKDIKSYAKV 93 (224)
T ss_pred ccceehhhhcccceEEEecCccc----CCcch--hHHHHHHHhhChhhhhcCceEEEeehhh-HHHHHHHHHHHHHHHhc
Confidence 34578888887 46666433222 35678 8999999999999975 9999999986 333222 3346666676
Q ss_pred cC--CCcceeeCCCCcccccc-----------Cce-----EEEEcCCCCEEEEecCC----cCHHHHHHHHHHHHHhh
Q 004302 174 EY--ITFPILLSNKNFPQMEN-----------GAC-----YLLSKDFGNARVFHENS----LDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 174 ~~--itfPVl~D~~~~~~~~y-----------gv~-----t~lId~~G~iv~~~~G~----~~~~~L~~~l~~ll~~~ 229 (762)
.+ ++|||+-|....+.-.+ |++ .|+|+++.+++....-. -+.+++...|..|+...
T Consensus 94 ~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvidsLqlt~ 171 (224)
T KOG0854|consen 94 KNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVIDSLQLTD 171 (224)
T ss_pred cCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHHHHHHHHhhhc
Confidence 66 89999999876544222 222 39999999999754332 23566777777776654
No 242
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.15 Score=59.07 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=56.4
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
-.++++-|+|.||+ +| .+-+|+..+..+.... +.+.=|.... + ..+..++++.
T Consensus 42 ~~~vlVeFYAPWCg-----hc--k~LaPey~kAA~~Lke~~s~i~LakVDat~--------~--~~~~~~y~v~------ 98 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCG-----HC--KALAPEYEKAATELKEEGSPVKLAKVDATE--------E--SDLASKYEVR------ 98 (493)
T ss_pred CceEEEEEEchhhh-----hh--hhhCcHHHHHHHHhhccCCCceeEEeecch--------h--hhhHhhhcCC------
Confidence 45889999999998 67 9999999998887653 4443333221 1 3333333321
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
|-||+.|-++|+......|.-+.+.+.+++.
T Consensus 99 ---------gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~ 129 (493)
T KOG0190|consen 99 ---------GYPTLKIFRNGRSAQDYNGPREADGIVKWLK 129 (493)
T ss_pred ---------CCCeEEEEecCCcceeccCcccHHHHHHHHH
Confidence 3347888889998666777777666665554
No 243
>PRK01742 tolB translocation protein TolB; Provisional
Probab=93.33 E-value=5.9 Score=45.13 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=59.3
Q ss_pred EEEeCCC----cEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeC--CCCeEEEEeCCCCEE
Q 004302 280 FLSDSNH----HRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS--ENHAIRRADMGRRVL 353 (762)
Q Consensus 280 YVADs~n----hrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt--~NhrIRkid~~~g~I 353 (762)
||++..+ .+|++.|.+|.-...+..+.+ .-...+++|++..|+.+.. ++..|+.+|+.++..
T Consensus 173 ~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~------------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~ 240 (429)
T PRK01742 173 YVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQ------------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR 240 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCCCceEeccCCC------------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence 6655432 577777776643333322111 1234667776666655432 345799999877755
Q ss_pred EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-EEEE-E-CCCCEEEEEECCCCcEE
Q 004302 354 ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-LLII-N-RSFETLWIMDLASGEIK 430 (762)
Q Consensus 354 ~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-LYVA-D-~gN~rI~v~d~~~g~I~ 430 (762)
..+... . |. + ..+++++||. |+++ + .++-.||.+|.+++.+.
T Consensus 241 ~~l~~~-----~------------g~----------------~--~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 241 KVVASF-----R------------GH----------------N--GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred EEEecC-----C------------Cc----------------c--CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 444211 0 00 0 1357788875 5544 3 34457889998887766
Q ss_pred EE
Q 004302 431 EA 432 (762)
Q Consensus 431 ti 432 (762)
++
T Consensus 286 ~l 287 (429)
T PRK01742 286 QL 287 (429)
T ss_pred ee
Confidence 55
No 244
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.15 E-value=0.3 Score=37.69 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.6
Q ss_pred CeEEEEeCCCC-eEEEEeCCCCEEEEEe
Q 004302 331 DCLYIVDSENH-AIRRADMGRRVLETVY 357 (762)
Q Consensus 331 g~LYVADt~Nh-rIRkid~~~g~I~Tia 357 (762)
+.||-+|...+ +|.+.++++....+++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi 28 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI 28 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE
Confidence 47999999999 9999999888777775
No 245
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.14 E-value=5.7 Score=43.40 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=57.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
=.+++.+|..+.||..-..--.|+.++.+|.+++.+.- . -|..|.+|.+-. ++...|+|...+++.+|
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~----------g~~DpE~Ieyig-~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-T----------GFSDPETIEYIG-GNQFVIVDERDRALYLF 155 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-c----------ccCChhHeEEec-CCEEEEEehhcceEEEE
Confidence 46788899899999777777889999999999998864 1 267799999984 67777789888888877
Q ss_pred eCCC
Q 004302 347 DMGR 350 (762)
Q Consensus 347 d~~~ 350 (762)
..+.
T Consensus 156 ~vd~ 159 (316)
T COG3204 156 TVDA 159 (316)
T ss_pred EEcC
Confidence 6543
No 246
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.11 E-value=0.34 Score=36.24 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEe
Q 004302 275 SGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYH 327 (762)
Q Consensus 275 s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd 327 (762)
.+++|||++.+.+.|.++|. +++++..+..| ..|.+|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-------------~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-------------GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-------------CCCceEEeC
Confidence 57899999999999999997 67777766543 237777763
No 247
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.09 E-value=2.1 Score=47.10 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=34.9
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeec
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPT 359 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~ 359 (762)
-|..|++--.. ++.|||+|++.+.|.++|+++|...+++-.
T Consensus 201 GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 201 GLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred CccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence 37788888886 799999999999999999988888887643
No 248
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.01 E-value=0.24 Score=43.41 Aligned_cols=38 Identities=8% Similarity=-0.193 Sum_probs=30.1
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
|.-|..+||+.| .+....|++|.+++.++.+.-++++.
T Consensus 3 v~iy~~~~C~~C-------~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYC-------VRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhH-------HHHHHHHHhhcccccCCcEEEEECCC
Confidence 567899999865 99999999999888776665665554
No 249
>PTZ00420 coronin; Provisional
Probab=92.87 E-value=26 Score=41.89 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=52.8
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
-..|+.+|.+..++++=+..+.|+++|. +++.+..+... .....+++++ ++.++++-...+.|+.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-------------~~V~Slswsp-dG~lLat~s~D~~IrI 193 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-------------KKLSSLKWNI-KGNLLSGTCVGKHMHI 193 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-------------CcEEEEEECC-CCCEEEEEecCCEEEE
Confidence 3578888866667666667889999998 56554433210 1257889987 5667777767789999
Q ss_pred EeCCCCEE-EEE
Q 004302 346 ADMGRRVL-ETV 356 (762)
Q Consensus 346 id~~~g~I-~Ti 356 (762)
+|+.++.+ .++
T Consensus 194 wD~Rsg~~i~tl 205 (568)
T PTZ00420 194 IDPRKQEIASSF 205 (568)
T ss_pred EECCCCcEEEEE
Confidence 99987754 444
No 250
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.63 E-value=0.58 Score=34.92 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCEEEEEe
Q 004302 329 DDDCLYIVDSENHAIRRADMGRRVLETVY 357 (762)
Q Consensus 329 ~~g~LYVADt~NhrIRkid~~~g~I~Tia 357 (762)
+++.|||++.+.+.|-+||..++.+..-.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 57899999999999999998776554443
No 251
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.56 E-value=8.8 Score=42.49 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=64.7
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
..+++ ++.+|+.+. ++.|..+|. +|+.+-..-.+.. + -.+.+++ ++.+||.+. ++.|..+|
T Consensus 60 ~p~v~--~~~v~v~~~-~g~v~a~d~~tG~~~W~~~~~~~----------~--~~~p~v~--~~~v~v~~~-~g~l~ald 121 (377)
T TIGR03300 60 QPAVA--GGKVYAADA-DGTVVALDAETGKRLWRVDLDER----------L--SGGVGAD--GGLVFVGTE-KGEVIALD 121 (377)
T ss_pred ceEEE--CCEEEEECC-CCeEEEEEccCCcEeeeecCCCC----------c--ccceEEc--CCEEEEEcC-CCEEEEEE
Confidence 44565 789999985 468999995 8987643322111 1 1124554 689999864 67899999
Q ss_pred CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 348 MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 348 ~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
..+|.+.=-...+ + ..+..|. +. ++.+|+.. .++.|+.+|..+|
T Consensus 122 ~~tG~~~W~~~~~-----------------~--------------~~~~~p~---v~-~~~v~v~~-~~g~l~a~d~~tG 165 (377)
T TIGR03300 122 AEDGKELWRAKLS-----------------S--------------EVLSPPL---VA-NGLVVVRT-NDGRLTALDAATG 165 (377)
T ss_pred CCCCcEeeeeccC-----------------c--------------eeecCCE---EE-CCEEEEEC-CCCeEEEEEcCCC
Confidence 8766543211111 0 0011232 22 56777754 5678999999888
Q ss_pred cE
Q 004302 428 EI 429 (762)
Q Consensus 428 ~I 429 (762)
++
T Consensus 166 ~~ 167 (377)
T TIGR03300 166 ER 167 (377)
T ss_pred ce
Confidence 64
No 252
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.47 E-value=15 Score=39.35 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=92.3
Q ss_pred EEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCE---E
Q 004302 278 RLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRV---L 353 (762)
Q Consensus 278 ~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~---I 353 (762)
-|.++-...|.|+.... +|+..+.|-- .|+ +.| .+.+.|+++.| |-.+|..||.||..++. +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh----~ds-----qVN---rLeiTpdk~~L--Aaa~~qhvRlyD~~S~np~Pv 76 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH----PDS-----QVN---RLEITPDKKDL--AAAGNQHVRLYDLNSNNPNPV 76 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec----Ccc-----cee---eEEEcCCcchh--hhccCCeeEEEEccCCCCCce
Confidence 45677778999999986 8988877743 222 232 37777755544 55578889999987542 3
Q ss_pred EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEE
Q 004302 354 ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV 433 (762)
Q Consensus 354 ~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~ 433 (762)
.|+-|. =++-..|.+..+|.-..+-...+.+++||+..-...+.+
T Consensus 77 ~t~e~h-----------------------------------~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~ 121 (311)
T KOG0315|consen 77 ATFEGH-----------------------------------TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY 121 (311)
T ss_pred eEEecc-----------------------------------CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc
Confidence 333221 012345666667887778888889999998653322221
Q ss_pred cCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEE
Q 004302 434 KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN 513 (762)
Q Consensus 434 ~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~st 513 (762)
. . ..|. .-+-+.+.+++|+++|.. .+|+.+|+....++.
T Consensus 122 ~-----------------------------~---------~spV--n~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 122 Q-----------------------------H---------NSPV--NTVVLHPNQTELISGDQS-GNIRVWDLGENSCTH 160 (311)
T ss_pred c-----------------------------C---------CCCc--ceEEecCCcceEEeecCC-CcEEEEEccCCcccc
Confidence 0 0 0010 013344678899999874 579999998886663
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.15 E-value=19 Score=39.84 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=60.3
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEe--cCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCI--GSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRV 352 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~i--GsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~ 352 (762)
++.+|+.. .++++..+|. +|+.+-.. +...+..+..........| .++ ++.+|+++. ++.++.+|+++|.
T Consensus 190 ~~~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p---~~~--~~~vy~~~~-~g~l~a~d~~tG~ 262 (377)
T TIGR03300 190 DGGVLVGF-AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP---VVD--GGQVYAVSY-QGRVAALDLRSGR 262 (377)
T ss_pred CCEEEEEC-CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc---EEE--CCEEEEEEc-CCEEEEEECCCCc
Confidence 35666654 4568888886 78765322 2111110000000011122 233 678999875 4679999987765
Q ss_pred EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 353 LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 353 I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
+.--... ..+...+++ ++.||+.+ .+++|+.+|..+|++
T Consensus 263 ~~W~~~~------------------------------------~~~~~p~~~-~~~vyv~~-~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 263 VLWKRDA------------------------------------SSYQGPAVD-DNRLYVTD-ADGVVVALDRRSGSE 301 (377)
T ss_pred EEEeecc------------------------------------CCccCceEe-CCEEEEEC-CCCeEEEEECCCCcE
Confidence 3221100 012223444 68999987 578999999988864
No 254
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.84 E-value=18 Score=40.50 Aligned_cols=109 Identities=8% Similarity=0.054 Sum_probs=59.2
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEe--cCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCI--GSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRV 352 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~i--GsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~ 352 (762)
++.+|+.. .++++..+|. +|+.+-.. +...+...-.........|. +. ++.||+++. ++.+..+|+.+|.
T Consensus 205 ~~~v~~~~-~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~---v~--~~~vy~~~~-~g~l~ald~~tG~ 277 (394)
T PRK11138 205 FGGAIVGG-DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV---VV--GGVVYALAY-NGNLVALDLRSGQ 277 (394)
T ss_pred CCEEEEEc-CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE---EE--CCEEEEEEc-CCeEEEEECCCCC
Confidence 45677654 4567777776 67654322 21111000000000112332 32 688999885 5688999887664
Q ss_pred EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 353 LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 353 I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
+.=-. .+..+..++++ +|.||+.+. +++++.+|..+|++
T Consensus 278 ~~W~~------------------------------------~~~~~~~~~~~-~~~vy~~~~-~g~l~ald~~tG~~ 316 (394)
T PRK11138 278 IVWKR------------------------------------EYGSVNDFAVD-GGRIYLVDQ-NDRVYALDTRGGVE 316 (394)
T ss_pred EEEee------------------------------------cCCCccCcEEE-CCEEEEEcC-CCeEEEEECCCCcE
Confidence 32110 01112234554 789999884 67899999988864
No 255
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.76 E-value=9.1 Score=42.89 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE 354 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~ 354 (762)
++.+|+.+. ++.+..+|. +|+.+-... +..+..++++ ++.||+.+. ++.|..+|..+|.+.
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~W~~~--------------~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~~ 317 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIVWKRE--------------YGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVEL 317 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEEEeec--------------CCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcEE
Confidence 688998875 568888887 676543211 1123334554 789999884 678999998777531
Q ss_pred EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 355 TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 355 TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
=- .. ..+ ...+..|. + .+|.||+.+. ++.|+.+|.++|++
T Consensus 318 W~--~~---------------~~~-------------~~~~~sp~---v-~~g~l~v~~~-~G~l~~ld~~tG~~ 357 (394)
T PRK11138 318 WS--QS---------------DLL-------------HRLLTAPV---L-YNGYLVVGDS-EGYLHWINREDGRF 357 (394)
T ss_pred Ec--cc---------------ccC-------------CCcccCCE---E-ECCEEEEEeC-CCEEEEEECCCCCE
Confidence 10 00 000 01123342 2 2689999985 57899999988875
No 256
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=91.68 E-value=1.4 Score=51.59 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=53.9
Q ss_pred ccCcccCCcceEEEccCCCEEEEEeCCCc----------------EEEEEcC-CC-------cEEEEecCC-CCCCCC--
Q 004302 259 VRNLLLHFPGCISADESGNRLFLSDSNHH----------------RIIVFDG-NG-------KILDCIGSC-PGFEDG-- 311 (762)
Q Consensus 259 ~~~~~L~~P~gIAVD~s~g~LYVADs~nh----------------rI~v~d~-~G-------~i~~~iGsG-~G~~DG-- 311 (762)
+-.+.+.+|-+|++.|..+++|++.++|. +|+++-+ ++ ++-.++-.| +...++
T Consensus 411 lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~ 490 (616)
T COG3211 411 LGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA 490 (616)
T ss_pred hCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc
Confidence 44567999999999999999999999887 4555544 22 222222111 111111
Q ss_pred --cccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 312 --EFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 312 --~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
..+...|++|-+|++|+ .|+|||+--++
T Consensus 491 ~~~~~~~~f~~PDnl~fD~-~GrLWi~TDg~ 520 (616)
T COG3211 491 SANINANWFNSPDNLAFDP-WGRLWIQTDGS 520 (616)
T ss_pred ccCcccccccCCCceEECC-CCCEEEEecCC
Confidence 22235699999999997 78999976554
No 257
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=91.65 E-value=0.51 Score=45.65 Aligned_cols=88 Identities=16% Similarity=-0.076 Sum_probs=61.9
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQ 189 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~ 189 (762)
.+-|.+..-.- .|=+ ...---|.+|.++|++ +.|.-|+.+. .. .+.
T Consensus 37 ~vl~~~gdp~r--~~E~--~D~avvleELa~e~~~~~v~~akVDiD~------~~----------------------~LA 84 (132)
T PRK11509 37 GVVLLSSDPKR--TPEV--SDNPVMIGELLREFPDYTWQVAIADLEQ------SE----------------------AIG 84 (132)
T ss_pred EEEEeCCCCCc--CCcc--ccHHHHHHHHHHHhcCCceEEEEEECCC------CH----------------------HHH
Confidence 44455544432 2333 3333367888899983 7888887765 21 223
Q ss_pred ccc---CceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhhcc
Q 004302 190 MEN---GACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQQE 231 (762)
Q Consensus 190 ~~y---gv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~ 231 (762)
.+| ++|++++=++|+.+....|..+++++.+.|++++.++++
T Consensus 85 ~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 85 DRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred HHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 334 467888889999999999999999999999999988754
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.35 E-value=21 Score=40.95 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEccCCCE-EEEE-eC-CCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe--CCCCeEE
Q 004302 271 SADESGNR-LFLS-DS-NHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD--SENHAIR 344 (762)
Q Consensus 271 AVD~s~g~-LYVA-Ds-~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD--t~NhrIR 344 (762)
..+|++++ +|++ .. ++..|+++|.. |+..... ...|. .....++|++..|+++- .++..|.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~------------~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGM------------LVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCc------------EEeeEECCCCCEEEEEEccCCCcEEE
Confidence 34565554 6653 33 36778888874 4333322 11110 01123566666665543 3456888
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc-E-EEEEC-CCCEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN-L-LIINR-SFETLWI 421 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~-L-YVAD~-gN~rI~v 421 (762)
.+|+.++....+.... +. -..| .+++||. | |++|. ++..|++
T Consensus 261 ~~dl~~g~~~~LT~~~-----------------~~---------------d~~p---~~SPDG~~I~F~Sdr~g~~~Iy~ 305 (419)
T PRK04043 261 LYDTNTKTLTQITNYP-----------------GI---------------DVNG---NFVEDDKRIVFVSDRLGYPNIFM 305 (419)
T ss_pred EEECCCCcEEEcccCC-----------------Cc---------------cCcc---EECCCCCEEEEEECCCCCceEEE
Confidence 8888777655552110 00 0012 3566663 4 44444 4448999
Q ss_pred EECCCCcEEEE
Q 004302 422 MDLASGEIKEA 432 (762)
Q Consensus 422 ~d~~~g~I~ti 432 (762)
+|.++|...++
T Consensus 306 ~dl~~g~~~rl 316 (419)
T PRK04043 306 KKLNSGSVEQV 316 (419)
T ss_pred EECCCCCeEeC
Confidence 99998887655
No 259
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.13 E-value=0.55 Score=38.51 Aligned_cols=33 Identities=9% Similarity=-0.257 Sum_probs=21.3
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
+.-|.+.||++| .+..+.|++. ++.+.-++++.
T Consensus 2 v~l~~~~~c~~c-------~~~~~~l~~~-----~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYTKPDCPYC-------KATKRFLDER-----GIPFEEVDVDE 34 (73)
T ss_pred EEEEeCCCChhH-------HHHHHHHHHC-----CCCeEEEeCCC
Confidence 456889999866 7766666653 44555555553
No 260
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=90.86 E-value=21 Score=38.81 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=114.0
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEe-cCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCI-GSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~i-GsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
+=.++++. .+++.+++-+....++..|.. |+....+ |-. .-=.++++++ +..-.|+-+....|
T Consensus 65 ~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~-------------~dVlsva~s~-dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 65 FVSDVVLS-SDGNFALSASWDGTLRLWDLATGESTRRFVGHT-------------KDVLSVAFST-DNRQIVSGSRDKTI 129 (315)
T ss_pred EecceEEc-cCCceEEeccccceEEEEEecCCcEEEEEEecC-------------CceEEEEecC-CCceeecCCCccee
Confidence 33567777 488899999999999999984 4555444 321 1246789997 55666888888999
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECC-CCEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRS-FETLWI 421 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~g-N~rI~v 421 (762)
..++..+.-..|+...++ .+ +-..+.+.|+ .+.||+..+ ...|++
T Consensus 130 klwnt~g~ck~t~~~~~~--------~~-------------------------WVscvrfsP~~~~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 130 KLWNTLGVCKYTIHEDSH--------RE-------------------------WVSCVRFSPNESNPIIVSASWDKTVKV 176 (315)
T ss_pred eeeeecccEEEEEecCCC--------cC-------------------------cEEEEEEcCCCCCcEEEEccCCceEEE
Confidence 999988887778754321 11 3456788876 355555554 456889
Q ss_pred EECCCCcEEEEEcCCceeeEEe-----ceeh----h-hhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEE
Q 004302 422 MDLASGEIKEAVKGFSKVLEIC-----GVLV----M-EKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHI 491 (762)
Q Consensus 422 ~d~~~g~I~ti~~G~g~~~~~~-----G~~~----~-~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~L 491 (762)
||+++.++.+-+.|....+..+ |.+- + ++..+-|-+ .+..-..++ ......+++...++.
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~-------~~k~lysl~---a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN-------EGKNLYSLE---AFDIVNSLCFSPNRY 246 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc-------CCceeEecc---CCCeEeeEEecCCce
Confidence 9999877766555544332211 1110 0 011111100 000101111 111234555566778
Q ss_pred EEEECCCCEEEEEECCCCcEE
Q 004302 492 LLCDIVGQRIMRLNRESGVCS 512 (762)
Q Consensus 492 YVADt~NhRIrkidl~~~~~s 512 (762)
++|-.....|+.+|++++.+-
T Consensus 247 wL~~at~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 247 WLCAATATSIKIWDLESKAVV 267 (315)
T ss_pred eEeeccCCceEEEeccchhhh
Confidence 888888888999999988654
No 261
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.79 E-value=30 Score=39.70 Aligned_cols=74 Identities=24% Similarity=0.392 Sum_probs=41.3
Q ss_pred EEccCCCEEEEEe--CCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe-C-CCCeEEEE
Q 004302 271 SADESGNRLFLSD--SNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD-S-ENHAIRRA 346 (762)
Q Consensus 271 AVD~s~g~LYVAD--s~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD-t-~NhrIRki 346 (762)
.++|++..|+++- .++..|++++.++.-...+-.+.+. + ..| .++|++..||++. . ++..|.++
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~-d--------~~p---~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI-D--------VNG---NFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc-c--------Ccc---EECCCCCEEEEEECCCCCceEEEE
Confidence 4566666665433 3567888888754333333222110 0 112 4666666666654 3 34478888
Q ss_pred eCCCCEEEEE
Q 004302 347 DMGRRVLETV 356 (762)
Q Consensus 347 d~~~g~I~Ti 356 (762)
|+.++....+
T Consensus 307 dl~~g~~~rl 316 (419)
T PRK04043 307 KLNSGSVEQV 316 (419)
T ss_pred ECCCCCeEeC
Confidence 8877766554
No 262
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.53 Score=54.58 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=30.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ 146 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~ 146 (762)
.+|=|||-|+|+||+ +| .+--|.+++|.++|++
T Consensus 383 e~KdVLvEfyAPWCg-----HC--k~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCG-----HC--KALAPIYEELAEKYKD 415 (493)
T ss_pred cccceEEEEcCcccc-----hh--hhhhhHHHHHHHHhcC
Confidence 589999999999997 77 9999999999999997
No 263
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.58 E-value=36 Score=42.08 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
.+|++++ +++++++=..++.|++++.+..... +....... .....-....++++++..+...++-..++.|+.+|
T Consensus 487 ~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~--~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 487 CAIGFDR-DGEFFATAGVNKKIKIFECESIIKD--GRDIHYPV--VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEECCccccc--ccccccce--EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 3466775 4555555556777777775321110 00000000 00000112356777654344445555678999999
Q ss_pred CCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEEEEECC
Q 004302 348 MGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 348 ~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~v~d~~ 425 (762)
..++.. .++.+.. ..-++|++++ ++.++++=...+.|++||..
T Consensus 562 ~~~~~~~~~~~~H~-----------------------------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 562 VARSQLVTEMKEHE-----------------------------------KRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred CCCCeEEEEecCCC-----------------------------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 876543 3332210 0245788875 68888888888999999987
Q ss_pred CCc
Q 004302 426 SGE 428 (762)
Q Consensus 426 ~g~ 428 (762)
++.
T Consensus 607 ~~~ 609 (793)
T PLN00181 607 QGV 609 (793)
T ss_pred CCc
Confidence 764
No 264
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=90.45 E-value=32 Score=38.06 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=76.9
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+|-+ .+|+..++-+..+.|..+|. .|..+..+ +|++| .+..++|.+.+..||--.+..=.++
T Consensus 70 sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~ri--------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi 134 (405)
T KOG1273|consen 70 SLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKRI--------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVI 134 (405)
T ss_pred EEEec-CCCCEeeeecCCceeEEEeccCCCceeEE--------------EccCccceeeeccccCCeEEEEEecCCcEEE
Confidence 45666 37888888888999999997 77776655 67888 6777888788888887665544455
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCC-CCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL-IFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L-~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+... -+.++.++-. . ..+ ..|....+++.|...++-++.+.+.+++..
T Consensus 135 ~~s~-~~h~~Lp~d~---d---------------------------~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 135 DFSD-PKHSVLPKDD---D---------------------------GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EecC-CceeeccCCC---c---------------------------cccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 5433 2334433210 0 112 134555777888888888888999999887
Q ss_pred CCc
Q 004302 426 SGE 428 (762)
Q Consensus 426 ~g~ 428 (762)
+-+
T Consensus 184 t~e 186 (405)
T KOG1273|consen 184 TLE 186 (405)
T ss_pred hhe
Confidence 653
No 265
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=90.45 E-value=0.44 Score=42.78 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=29.6
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
.|..|.||+++++++.||||+...+.|+++...
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 478899999999899999999999999998653
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=90.14 E-value=39 Score=38.74 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=49.8
Q ss_pred eEEEcCCCc-EE-EEEC-CCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCC
Q 004302 400 HLMKSEDDN-LL-IINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 476 (762)
Q Consensus 400 gIavd~dG~-LY-VAD~-gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p 476 (762)
..++++||. |+ +++. +..+|+++|.+++....+..+... . ..
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~---------------------------------~-~~- 375 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPEN---------------------------------K-ES- 375 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCC---------------------------------c-cc-
Confidence 345678875 43 3332 346899999998887655221110 0 00
Q ss_pred CcceeeeEEecCCEEEEEE--CCCCEEEEEECCCCcEEEEeeccccccCCCceee
Q 004302 477 YAGLISSSIAFQNHILLCD--IVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFA 529 (762)
Q Consensus 477 ~~~lgsav~~~~g~LYVAD--t~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~~ 529 (762)
...++++..||++- .+...|..++++++....+. .+.|....|.|..
T Consensus 376 -----p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~ 424 (428)
T PRK01029 376 -----PSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGA 424 (428)
T ss_pred -----eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence 12333444555432 23457888888888766654 3455556777753
No 267
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=89.92 E-value=1.8 Score=46.27 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=71.3
Q ss_pred cCCCCCCCceeecccCCCccccC-CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC-CeEEEEEEcCCCcc
Q 004302 82 TFNEFQGPHHLWFNIVEDNIHFF-KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP-QLQVIGFLHGCSTI 159 (762)
Q Consensus 82 tl~~l~g~~~~w~n~~g~~v~Ls-d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~-~v~VvgV~~~~~~~ 159 (762)
-||.+.|. +++|+.+++. .++||+-||..+.+-=+- .|..--.-|.++++.+.-. .+++|-|++.+
T Consensus 100 yFP~l~g~-----tL~g~~~~~~~~l~gkvSlV~l~s~~~ge----~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e--- 167 (252)
T PF05176_consen 100 YFPNLQGK-----TLAGNKVDTTDLLRGKVSLVCLFSSAWGE----EMVDSWTSPFLEDFLQEPYGRVQIVEINLIE--- 167 (252)
T ss_pred cCCCCccc-----cCCCCCcccccccCCceEEEEEeehHHHH----HHHHHHhhHHHHHHhhCCCCceEEEEEecch---
Confidence 45566655 3455577764 479998877765442220 1100111256666555432 49999999876
Q ss_pred CcCCHH--HHHHHHH---hcCCC------cceeeCC--CCccccccCce-----E-EEEcCCCCEEEEecCCcCHHHHHH
Q 004302 160 SAVDQT--RLVEMLM---KEYIT------FPILLSN--KNFPQMENGAC-----Y-LLSKDFGNARVFHENSLDIGMLNK 220 (762)
Q Consensus 160 ~e~~~~--~v~~f~~---k~~it------fPVl~D~--~~~~~~~ygv~-----t-~lId~~G~iv~~~~G~~~~~~L~~ 220 (762)
+.- -+..++. +..++ |=++.+. ...+.++.++. | ||+|.+|+|++...|..+.++++.
T Consensus 168 ---~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~ 244 (252)
T PF05176_consen 168 ---NWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELES 244 (252)
T ss_pred ---HHHHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHH
Confidence 211 1222221 22222 2222222 11223344432 4 999999999999999999999876
Q ss_pred HHH
Q 004302 221 AVE 223 (762)
Q Consensus 221 ~l~ 223 (762)
..+
T Consensus 245 L~k 247 (252)
T PF05176_consen 245 LWK 247 (252)
T ss_pred HHH
Confidence 654
No 268
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.86 E-value=0.59 Score=44.25 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=34.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHG 155 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~ 155 (762)
.++++|+.|+-.+|| +| ....|.++++.++++++.|+-.+.+
T Consensus 4 ~a~~~i~~f~D~~Cp-----~C--~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYNCG-----YC--KKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCCCh-----hH--HHhhHHHHHHHHHCCCceEEEEeCC
Confidence 488999999999997 55 9999999999999988666655544
No 269
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=89.83 E-value=34 Score=37.31 Aligned_cols=258 Identities=11% Similarity=0.051 Sum_probs=139.5
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCc------EEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGK------ILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~------i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
.++++.+.+-.+|++-+....|++.+.+.. +++.+ .| .-+.-.++++.+ +++..++-+...
T Consensus 19 t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~---~G---------HsH~v~dv~~s~-dg~~alS~swD~ 85 (315)
T KOG0279|consen 19 TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL---TG---------HSHFVSDVVLSS-DGNFALSASWDG 85 (315)
T ss_pred EEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee---ec---------cceEecceEEcc-CCceEEeccccc
Confidence 345666666778888888888888877433 22222 11 112345678886 788999999999
Q ss_pred eEEEEeCCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEE
Q 004302 342 AIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~ 420 (762)
.+|.+|+.++.- ..+.|.+ ..-.++++++|+.-.|+-+..+.|.
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~-----------------------------------~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHT-----------------------------------KDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred eEEEEEecCCcEEEEEEecC-----------------------------------CceEEEEecCCCceeecCCCcceee
Confidence 999999988732 2333332 0245799999999999999999999
Q ss_pred EEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCE
Q 004302 421 IMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQR 500 (762)
Q Consensus 421 v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhR 500 (762)
.|+.-++-..++..+. ..+|.+.-+..+.. ..| . ..-+..+..+=|=|..|.+
T Consensus 131 lwnt~g~ck~t~~~~~---------------------~~~WVscvrfsP~~--~~p---~-Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDS---------------------HREWVSCVRFSPNE--SNP---I-IVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred eeeecccEEEEEecCC---------------------CcCcEEEEEEcCCC--CCc---E-EEEccCCceEEEEccCCcc
Confidence 9998776655553221 13454432111110 011 0 1111233344444444444
Q ss_pred EEEE-ECCCCcEEEEeeccccccCCCceeeccccceeecccccCCCccccceeeecCCCceeEEEEEecCCCcccccccc
Q 004302 501 IMRL-NRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVDIPSDTELVESLQ 579 (762)
Q Consensus 501 Irki-dl~~~~~sti~~s~~G~lG~p~~~~~pl~~v~~~~~~~~g~~~~~~~~~~~~pG~~~~~v~v~~p~~~~l~~p~~ 579 (762)
++.- -..+++++++++|-+|.+-....- -...+-+.. .+|.. +..+ ++...|.--+-.|.-..|.+.-.
T Consensus 184 l~~~~~gh~~~v~t~~vSpDGslcasGgk---dg~~~LwdL-~~~k~---lysl---~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDGSLCASGGK---DGEAMLWDL-NEGKN---LYSL---EAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred hhhccccccccEEEEEECCCCCEEecCCC---CceEEEEEc-cCCce---eEec---cCCCeEeeEEecCCceeEeeccC
Confidence 4332 124677777787777765221000 000110000 01111 1111 11111222223455555544433
Q ss_pred cc-eeeeeccCceeeeecCCCccCCccccchhh
Q 004302 580 EG-CIWRQARGTASVVLRAEDVAGSLEKVGVAQ 611 (762)
Q Consensus 580 ~~-c~~rq~rg~~~~~~~~~~~~~~~~~~~~~~ 611 (762)
++ =||.+.-+++.+...-|+.. .+.|++-++
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g-~s~~~~~~~ 285 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIG-PSSKAGDPI 285 (315)
T ss_pred CceEEEeccchhhhhhccccccc-cccccCCcE
Confidence 33 68999999988877665543 345555443
No 270
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.55 E-value=25 Score=37.78 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=52.4
Q ss_pred ccCCc-ceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCC
Q 004302 317 KLMRP-AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL 395 (762)
Q Consensus 317 ~fn~P-~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L 395 (762)
+++.| ..|.++|..+.|++.|- ++.||++|+....-+-. -.. + ..
T Consensus 122 ~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~-liP---------------------e-----------~~ 167 (311)
T KOG0315|consen 122 QHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHE-LIP---------------------E-----------DD 167 (311)
T ss_pred cCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccc-cCC---------------------C-----------CC
Confidence 45666 56888998899999984 56799999754421111 000 0 01
Q ss_pred CCcceEEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 396 IFPWHLMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 396 ~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
..-..+++.+||...+|-...++.++|++-++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~ 199 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH 199 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence 24567899999999988777777888877553
No 271
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=89.51 E-value=3.1 Score=43.27 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=63.9
Q ss_pred CccccCCC-CCCEEEEEEecc----CCCCccCCCCcchhhc----HHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHH
Q 004302 99 DNIHFFKR-GGAFLVLAGRFV----DNCDSLIAGCGTVVTF----EKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVE 169 (762)
Q Consensus 99 ~~v~Lsd~-rGK~VvLnFWAt----WC~pC~~p~C~~~~em----P~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~ 169 (762)
.+++|.|+ .|+--||-+... |=.+| |+| -..+ ..+..|.++ |+.++.|+-. ..+++.+
T Consensus 56 G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C--~gC--s~~~D~~~g~l~hL~~r--d~tfa~vSra-------P~~~i~a 122 (211)
T PF05988_consen 56 GPVSLADLFEGRRQLIVYHFMFGPDWDEGC--PGC--SFWADHIDGALRHLHAR--DTTFAVVSRA-------PLEKIEA 122 (211)
T ss_pred CcccHHHHcCCCceEEEEeeccCCCCCCCC--Cch--hhhHhhhhhhHHHHHhC--CceEEEEeCC-------CHHHHHH
Confidence 44888774 665444433333 34455 888 4444 444455443 6888888755 5899999
Q ss_pred HHHhcCCCcceeeCCCCccccccCc--------e--EEEEcCCCCEEEEe
Q 004302 170 MLMKEYITFPILLSNKNFPQMENGA--------C--YLLSKDFGNARVFH 209 (762)
Q Consensus 170 f~~k~~itfPVl~D~~~~~~~~ygv--------~--t~lId~~G~iv~~~ 209 (762)
|-++.|.+||-+-+.+......|++ | .+++...|+|-++.
T Consensus 123 fk~rmGW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTy 172 (211)
T PF05988_consen 123 FKRRMGWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTY 172 (211)
T ss_pred HHHhcCCCceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEEe
Confidence 9999999999998887655555554 1 35555558887653
No 272
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.43 E-value=25 Score=42.02 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=96.9
Q ss_pred ceEEEccCCCEEEEEeCCC------cEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCc---ceEEEecCCCeEEEEe
Q 004302 268 GCISADESGNRLFLSDSNH------HRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRP---AASFYHKDDDCLYIVD 337 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~n------hrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P---~GIavd~~~g~LYVAD 337 (762)
.++++- +|.|||+=..+ +.+.++|+. +++.... .++.| .|+++- +|.||+.-
T Consensus 326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--------------~M~~~R~~~~v~~l--~g~iYavG 387 (571)
T KOG4441|consen 326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--------------PMNTKRSDFGVAVL--DGKLYAVG 387 (571)
T ss_pred ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccC--------------CccCccccceeEEE--CCEEEEEe
Confidence 556664 68999986655 567788873 4444422 23333 456664 79999987
Q ss_pred CCC-----CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE
Q 004302 338 SEN-----HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII 412 (762)
Q Consensus 338 t~N-----hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA 412 (762)
..+ +.|-++|+.+...++++..-. ..+=.|+++- +|.|||+
T Consensus 388 G~dg~~~l~svE~YDp~~~~W~~va~m~~---------------------------------~r~~~gv~~~-~g~iYi~ 433 (571)
T KOG4441|consen 388 GFDGEKSLNSVECYDPVTNKWTPVAPMLT---------------------------------RRSGHGVAVL-GGKLYII 433 (571)
T ss_pred ccccccccccEEEecCCCCcccccCCCCc---------------------------------ceeeeEEEEE-CCEEEEE
Confidence 655 257788887777766643210 1123456664 7999998
Q ss_pred ---ECCC---CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEe
Q 004302 413 ---NRSF---ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIA 486 (762)
Q Consensus 413 ---D~gN---~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~ 486 (762)
|..+ +.+..||+.++..+.+. . |+ .+ ..+.++++
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~-~---------------------M~----------------~~--R~~~g~a~ 473 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIA-P---------------------MN----------------TR--RSGFGVAV 473 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecC-C---------------------cc----------------cc--cccceEEE
Confidence 3333 56888998888766441 0 00 00 01234566
Q ss_pred cCCEEEEEECCC-----CEEEEEECCCCcEEEEe
Q 004302 487 FQNHILLCDIVG-----QRIMRLNRESGVCSNFQ 515 (762)
Q Consensus 487 ~~g~LYVADt~N-----hRIrkidl~~~~~sti~ 515 (762)
.++.|||+=-.+ ..|-++|+.+..-+.++
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 788999875433 24788999998877663
No 273
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.27 E-value=26 Score=39.22 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCEEEEEeC----CCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC---------C
Q 004302 276 GNRLFLSDS----NHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN---------H 341 (762)
Q Consensus 276 ~g~LYVADs----~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N---------h 341 (762)
..++||.|. ...||.++|. +|+++..+-.| |..+ ++++++++.+|+|.+.= .
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g------------~~~~--~~~spdgk~~y~a~T~~sR~~rG~RtD 67 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTG------------FLGN--VALSPDGKTIYVAETFYSRGTRGERTD 67 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEE------------SSEE--EEE-TTSSEEEEEEEEEEETTEEEEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeecc------------cCCc--eeECCCCCEEEEEEEEEecccccccee
Confidence 468999997 3469999997 67877666432 2222 66788899999999642 2
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC-CcEEEEECC-CCEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED-DNLLIINRS-FETL 419 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d-G~LYVAD~g-N~rI 419 (762)
-|..+|..+-...--.--. . + .....+.++.-++++.| ..+||.+.. ...|
T Consensus 68 vv~~~D~~TL~~~~EI~iP--~--------------k-----------~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIP--P--------------K-----------PRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEEEEETTTTEEEEEEEET--T--------------S------------B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred EEEEEecCcCcccceEecC--C--------------c-----------chheecccccceEEccCCcEEEEEccCCCCeE
Confidence 4556666554322110000 0 0 01233568888999866 578998754 3457
Q ss_pred EEEECCCCcE
Q 004302 420 WIMDLASGEI 429 (762)
Q Consensus 420 ~v~d~~~g~I 429 (762)
-++|...+++
T Consensus 121 tVVDl~~~kv 130 (342)
T PF06433_consen 121 TVVDLAAKKV 130 (342)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCce
Confidence 7888887754
No 274
>PTZ00421 coronin; Provisional
Probab=89.20 E-value=48 Score=38.97 Aligned_cols=75 Identities=12% Similarity=-0.033 Sum_probs=49.3
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCCCCEE--------EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCC
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVL--------ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP 392 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I--------~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~ 392 (762)
-..++++|.+++++++=+.++.|+.+|...+.+ .++.|.
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--------------------------------- 124 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH--------------------------------- 124 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC---------------------------------
Confidence 367888874455666667788999999754321 111110
Q ss_pred CCCCCcceEEEcCCC-cEEEEECCCCEEEEEECCCCcEE
Q 004302 393 QSLIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 393 ~~L~~P~gIavd~dG-~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
=.....|++.+++ +++++=...+.|++||..++...
T Consensus 125 --~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 125 --TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred --CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence 0134578888764 67777777899999999887643
No 275
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=89.03 E-value=2.6 Score=46.64 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=89.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcC-CCcEE-EEecCC---------CCC-----CCCcccccccCCcceEE--------
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDG-NGKIL-DCIGSC---------PGF-----EDGEFESSKLMRPAASF-------- 325 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~-~G~i~-~~iGsG---------~G~-----~DG~~~~a~fn~P~GIa-------- 325 (762)
+|++ -.+++.|+-+....|+++|- +|+.+ +.|+-- .|+ .|-.+.-..+..|..++
T Consensus 241 LCLq-yd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 241 LCLQ-YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred Eeee-ccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 5566 36778888888888888887 56544 222210 111 12222223344444331
Q ss_pred ------EecCCCeEEEEeCCCCeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCc
Q 004302 326 ------YHKDDDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 398 (762)
Q Consensus 326 ------vd~~~g~LYVADt~NhrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P 398 (762)
++- ++.+.|+-++...|++++.+++ +|.|+.| +-
T Consensus 320 rAaVNvVdf-d~kyIVsASgDRTikvW~~st~efvRtl~g--------------------------------------Hk 360 (499)
T KOG0281|consen 320 RAAVNVVDF-DDKYIVSASGDRTIKVWSTSTCEFVRTLNG--------------------------------------HK 360 (499)
T ss_pred hhheeeecc-ccceEEEecCCceEEEEeccceeeehhhhc--------------------------------------cc
Confidence 121 2334455555566666665443 4444432 23
Q ss_pred ceEEEcC-CCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCC
Q 004302 399 WHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 477 (762)
Q Consensus 399 ~gIavd~-dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~ 477 (762)
+|||.-. +|.+.|+-+..+.|+.||.+.|..-++..|..+.+
T Consensus 361 RGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv------------------------------------- 403 (499)
T KOG0281|consen 361 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV------------------------------------- 403 (499)
T ss_pred ccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhh-------------------------------------
Confidence 4555543 58889998899999999988776554444433110
Q ss_pred cceeeeEEecCCEEEEEECCCCEEEEEECCCC
Q 004302 478 AGLISSSIAFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 478 ~~lgsav~~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
-. ..+++.=+|+-.|.++|+.+|+.++
T Consensus 404 ----Rc-iRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 404 ----RC-IRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ----hh-eeecCceeeeccccceEEEEecccc
Confidence 00 1345566777788889999988764
No 276
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=88.96 E-value=15 Score=37.45 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=51.3
Q ss_pred ceEEEccCCCEEEEEe-CCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC--CeEE
Q 004302 268 GCISADESGNRLFLSD-SNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN--HAIR 344 (762)
Q Consensus 268 ~gIAVD~s~g~LYVAD-s~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N--hrIR 344 (762)
..++-+|.+.++.|.- ....+|..+|.+++.+..++.+ ....|+.+|.+..|.++..+| +.|.
T Consensus 63 ~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--------------~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 63 HDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--------------PRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred EEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--------------CceEEEECCCCCEEEEEEccCCCcEEE
Confidence 4577788777776553 3456899999998888777642 123589999888888887664 5799
Q ss_pred EEeCCCCE
Q 004302 345 RADMGRRV 352 (762)
Q Consensus 345 kid~~~g~ 352 (762)
.+|.....
T Consensus 129 ~wd~~~~~ 136 (194)
T PF08662_consen 129 FWDVRKKK 136 (194)
T ss_pred EEECCCCE
Confidence 99976443
No 277
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=88.90 E-value=7 Score=45.45 Aligned_cols=146 Identities=14% Similarity=0.054 Sum_probs=85.3
Q ss_pred CCCccchhhhhhhhccCCCCc--ccccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcc
Q 004302 236 PSGLKCTWAKQAEVLKEPHAC--SSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEF 313 (762)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~ 313 (762)
.-++.+.|+.+..++.-..-+ ...-.-.=..|.|+|+.+ ++.+.|.-...+-++.-|.++-+..-+|
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~~~~~~---------- 443 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVSSIPIG---------- 443 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcceeeccc----------
Confidence 445667777766665221100 000011235789999995 4445444444444444444443333222
Q ss_pred cccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCC
Q 004302 314 ESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ 393 (762)
Q Consensus 314 ~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~ 393 (762)
..|.++|++| ++...+.-....+|+.+.+.++.+...+-. ..
T Consensus 444 -----y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~--------------------------------~~ 485 (603)
T KOG0318|consen 444 -----YESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKL--------------------------------LE 485 (603)
T ss_pred -----cccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeee--------------------------------ec
Confidence 3588999998 455555555566788887765443222100 00
Q ss_pred CCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEE
Q 004302 394 SLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 394 ~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
....++.|++++||..+.+---+..|..||..++++.
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 1224889999999887777667889999999888764
No 278
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=88.89 E-value=1 Score=34.65 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=31.6
Q ss_pred CEEEEEeCCCc-EEEEEcCCCcEE-EEecCCCCCCCCcccccccCCcceEEEec
Q 004302 277 NRLFLSDSNHH-RIIVFDGNGKIL-DCIGSCPGFEDGEFESSKLMRPAASFYHK 328 (762)
Q Consensus 277 g~LYVADs~nh-rI~v~d~~G~i~-~~iGsG~G~~DG~~~~a~fn~P~GIavd~ 328 (762)
++||-+|.+.+ +|.+.+.+|.-. .++- ..+..|.|||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~------------~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVIS------------DDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEE------------SSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEE------------CCCCCcCEEEECC
Confidence 57999999999 999999988543 3332 2478899999974
No 279
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=88.88 E-value=0.24 Score=49.52 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=20.0
Q ss_pred eeecccCCCccccCCCCCCEEEEEEeccCCCCc
Q 004302 91 HLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDS 123 (762)
Q Consensus 91 ~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC 123 (762)
..|..-+.+.+..+.-.+|+|+|++-++||..|
T Consensus 20 V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wC 52 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKENKPIFLSIGYSWCHWC 52 (163)
T ss_dssp S--B-SSHHHHHHHHHHT--EEEEEE-TT-HHH
T ss_pred CCcccCCHHHHHHHHhcCCcEEEEEEecCCcch
Confidence 566666555667777789999999999999844
No 280
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=88.73 E-value=2.1 Score=46.10 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=58.0
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
-++.+|||+|+-.-++.| ...--.|..|+++|+.+.|+-|+...- . ++. +|
T Consensus 144 ~~~~~VVVHiY~~~~~~C-------~~mn~~L~~LA~kyp~vKFvkI~a~~~-----~------~~~----~f------- 194 (265)
T PF02114_consen 144 SKSTWVVVHIYEPGFPRC-------EIMNSCLECLARKYPEVKFVKIRASKC-----P------ASE----NF------- 194 (265)
T ss_dssp STT-EEEEEEE-TTSCCH-------HHHHHHHHHHHHH-TTSEEEEEEECGC-----C------TTT----TS-------
T ss_pred CCCcEEEEEEEeCCCchH-------HHHHHHHHHHHHhCCceEEEEEehhcc-----C------ccc----CC-------
Confidence 357799999999999755 899999999999999999998876530 0 000 01
Q ss_pred CccccccCceEEEEcCCCCEEEEecCCcC---HHHHHHHHHHHHHh
Q 004302 186 NFPQMENGACYLLSKDFGNARVFHENSLD---IGMLNKAVEELIMQ 228 (762)
Q Consensus 186 ~~~~~~ygv~t~lId~~G~iv~~~~G~~~---~~~L~~~l~~ll~~ 228 (762)
..-++|++|+=++|.++....|-.+ .+--...|+.+|.+
T Consensus 195 ----~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 195 ----PDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp -----TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred ----cccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 1236888888889999998765322 12233345555555
No 281
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.69 E-value=33 Score=39.00 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=50.4
Q ss_pred CcceEEEcCC-CcEEEEECCCCEEEEEECCC--CcEEEEEc-CCceeeEEeceehhhhhhhhccCCccccccccCCcccc
Q 004302 397 FPWHLMKSED-DNLLIINRSFETLWIMDLAS--GEIKEAVK-GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL 472 (762)
Q Consensus 397 ~P~gIavd~d-G~LYVAD~gN~rI~v~d~~~--g~I~ti~~-G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~ 472 (762)
.|.|+++|.+ |.|||++.. .-||+|+.+- +.-.+++. ..+ . .-..+.
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g-------~---------------------~l~aDv 259 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADG-------D---------------------GLVADV 259 (381)
T ss_dssp -EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSS-------S---------------------SB-S-E
T ss_pred cceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccc-------c---------------------ccccCc
Confidence 6999999965 999999964 7899999863 21111110 000 0 000111
Q ss_pred cCCCCcceeeeEEe---cCCEEEEEECCCCEEEEEECCC--CcEEEEee
Q 004302 473 KELPYAGLISSSIA---FQNHILLCDIVGQRIMRLNRES--GVCSNFQF 516 (762)
Q Consensus 473 ~~~p~~~lgsav~~---~~g~LYVADt~NhRIrkidl~~--~~~sti~~ 516 (762)
.|.++.. ..++|+|++.+++....++.++ ..+..|.+
T Consensus 260 -------EGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 260 -------EGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp -------EEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred -------cceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 2344431 2468999999999999999986 34455544
No 282
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=88.60 E-value=1.2 Score=36.20 Aligned_cols=56 Identities=13% Similarity=-0.108 Sum_probs=33.3
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC-CcceeeCCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI-TFPILLSNK 185 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i-tfPVl~D~~ 185 (762)
|+-|.+.||++| ++..+.|++.. +.+.-+++.. +.+....+.+..+. ++|++..++
T Consensus 2 v~ly~~~~Cp~C-------~~~~~~L~~~~-----i~~~~~di~~------~~~~~~~l~~~~~~~~~P~~~~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYC-------KRAKRLLESLG-----IEFEEIDILE------DGELREELKELSGWPTVPQIFING 58 (72)
T ss_pred EEEEECCCCHHH-------HHHHHHHHHcC-----CcEEEEECCC------CHHHHHHHHHHhCCCCcCEEEECC
Confidence 456789999866 88888888773 4444555543 33333333434453 667666543
No 283
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=0.32 Score=50.70 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=56.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN 186 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~ 186 (762)
+++.+|++|||.||.+| .+...-+..+.+..++++++-+..+. -..+...+
T Consensus 16 ~~~~~~~~f~a~wa~~~-------~q~~~v~~~~~~~~~~~~~~k~~a~~-------~~eis~~~--------------- 66 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQ-------KQMDQVFDHLAEYFKNAQFLKLEAEE-------FPEISNLI--------------- 66 (227)
T ss_pred ccchhhhhhhhhhhhhh-------hhHHHHHHHHHHhhhhheeeeehhhh-------hhHHHHHH---------------
Confidence 89999999999999876 66666666666666557776664433 11111111
Q ss_pred ccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 187 FPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 187 ~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
..-.+||+++...|+.+.+..|... ..+...++.+....
T Consensus 67 ---~v~~vp~~~~~~~~~~v~~l~~~~~-~~~~~~~~~~~~~~ 105 (227)
T KOG0911|consen 67 ---AVEAVPYFVFFFLGEKVDRLSGADP-PFLVSKVEKLAESG 105 (227)
T ss_pred ---HHhcCceeeeeecchhhhhhhccCc-HHHHHHHHHhhhhc
Confidence 1124568777778888887777666 34444555544443
No 284
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.23 E-value=7.8 Score=47.61 Aligned_cols=120 Identities=20% Similarity=0.291 Sum_probs=73.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRk 345 (762)
.|+++.|+.- -.++--.++.|+.+|- .|..+.-|-. -|| | .||+++| ..-|||+-.....|++
T Consensus 13 KglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFde----HdG---------pVRgv~FH~-~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 13 KGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFDE----HDG---------PVRGVDFHP-TQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhhc----cCC---------ccceeeecC-CCCeEEecCCccEEEE
Confidence 4667776433 3344446788998885 5665554422 133 4 7899998 6889999999999999
Q ss_pred EeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 346 ADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 346 id~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
++.+.+. +.|+.|.= +|+ +.. .-.-.+||=|..+ ...+||+|+.
T Consensus 78 WnYk~rrclftL~GHl----------DYV-------Rt~--------~FHheyPWIlSAS----------DDQTIrIWNw 122 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHL----------DYV-------RTV--------FFHHEYPWILSAS----------DDQTIRIWNW 122 (1202)
T ss_pred Eecccceehhhhcccc----------cee-------EEe--------eccCCCceEEEcc----------CCCeEEEEec
Confidence 9987654 44554431 010 000 0001357766654 2357888988
Q ss_pred CCCcEEEEEcCCc
Q 004302 425 ASGEIKEAVKGFS 437 (762)
Q Consensus 425 ~~g~I~ti~~G~g 437 (762)
+++..-.+..|..
T Consensus 123 qsr~~iavltGHn 135 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHN 135 (1202)
T ss_pred cCCceEEEEecCc
Confidence 8877555555554
No 285
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=88.10 E-value=0.75 Score=43.75 Aligned_cols=44 Identities=18% Similarity=0.009 Sum_probs=32.5
Q ss_pred CCCCEEEEEEecc-------CCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCC
Q 004302 106 RGGAFLVLAGRFV-------DNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 106 ~rGK~VvLnFWAt-------WC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~ 156 (762)
-.|++++|.|.++ |||+| ++..|.+++.-...++ ..+|-|.+++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC-------~~aep~v~~~f~~~~~~~~lv~v~VG~ 68 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDC-------VAAEPVVEKAFKKAPENARLVYVEVGD 68 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHH-------HHHHHHHHHHHHH-STTEEEEEEE---
T ss_pred cCCCeEEEEEEccCCCCCCcccHHH-------HHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 4688999999976 99988 9999999998777665 7777777764
No 286
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=87.72 E-value=0.81 Score=41.06 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=30.2
Q ss_pred cccCCcceEEEccCCCEEEEEeCCCcEEEEEcC
Q 004302 262 LLLHFPGCISADESGNRLFLSDSNHHRIIVFDG 294 (762)
Q Consensus 262 ~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~ 294 (762)
..|.+|.||++++.+..||||+...|.|.++..
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 369999999999989999999999999999864
No 287
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=87.15 E-value=57 Score=36.72 Aligned_cols=208 Identities=18% Similarity=0.181 Sum_probs=105.7
Q ss_pred CcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC----CC----------C---CCCc-----cc---
Q 004302 261 NLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC----PG----------F---EDGE-----FE--- 314 (762)
Q Consensus 261 ~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG----~G----------~---~DG~-----~~--- 314 (762)
++.|.+=.+|+||| .+.-|++-+....|.++|. +|++.....+- .| | .|+. .+
T Consensus 148 ~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred hhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 35788999999998 5888899888888999998 67765444210 11 0 1111 11
Q ss_pred -----ccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccC
Q 004302 315 -----SSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSE 388 (762)
Q Consensus 315 -----~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~ 388 (762)
...+..=..++++|. -.+.++-.....+|++|+.++ .|.++.|.-.
T Consensus 227 vIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~--------------------------- 278 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN--------------------------- 278 (460)
T ss_pred hHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCC---------------------------
Confidence 123444555666663 344455555567777776543 4555544310
Q ss_pred CCCCCCCCCcceEEEcC-CCcEEEEECCCCEEEEEECCCCcEEEEEcCCc---eeeEEeceehhhhhhhhccCCcccccc
Q 004302 389 KLDPQSLIFPWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFS---KVLEICGVLVMEKVFLLKQMPQDWLLH 464 (762)
Q Consensus 389 ~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g---~~~~~~G~~~~~r~~~~~~~p~~~~~~ 464 (762)
--..|.+.+ |+.+| +-+....|+.||...|.-. .+++. .+...++. .+..++.....|.+.+
T Consensus 279 --------~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt~--~tlt~hkksvral~lh---P~e~~fASas~dnik~ 344 (460)
T KOG0285|consen 279 --------PVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKTM--ITLTHHKKSVRALCLH---PKENLFASASPDNIKQ 344 (460)
T ss_pred --------cceeEEeecCCCceE-EecCCceEEEeeeccCcee--EeeecccceeeEEecC---CchhhhhccCCcccee
Confidence 011222322 34444 3445567888888777522 12211 11122221 0000000000111111
Q ss_pred ccCCccccc-C-CCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcE
Q 004302 465 QIDSSCSLK-E-LPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC 511 (762)
Q Consensus 465 ~~d~~~~~~-~-~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~ 511 (762)
..-.-+.+- + ......+-+++...+.+||+-..|.-|..+|-.+|..
T Consensus 345 w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 345 WKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 000001100 0 0011234455566678999999999999999887753
No 288
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.83 E-value=4.7 Score=44.73 Aligned_cols=173 Identities=13% Similarity=0.178 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEecCC-CCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCC-E
Q 004302 275 SGNRLFLSDSNHHRIIVFDGNGKILDCIGSC-PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRR-V 352 (762)
Q Consensus 275 s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG-~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g-~ 352 (762)
-++...|+-...+.|.++|.+......+=.| .| +=++++- .+.+.|+-+....||++|-++| .
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG--------------SVLCLqy-d~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG--------------SVLCLQY-DERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCC--------------cEEeeec-cceEEEecCCCceEEEEeccCCch
Confidence 3567888888889999999865433222222 22 1144442 4668888888889999998776 3
Q ss_pred EEEEeecCCCCCCCCc-hhhhhhhccCccccCCCccCCCCCCCCCCcceEE--------------EcCCCcEEEEECCCC
Q 004302 353 LETVYPTSGISKKNNS-LWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM--------------KSEDDNLLIINRSFE 417 (762)
Q Consensus 353 I~TiaG~G~~~~~G~~-~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIa--------------vd~dG~LYVAD~gN~ 417 (762)
+.|+.+.++ ...+-. ..++++ ...+.-...-..|..|..++ |+=+..+.|+-++..
T Consensus 270 l~tlihHce-aVLhlrf~ng~mv--------tcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDR 340 (499)
T KOG0281|consen 270 LNTLIHHCE-AVLHLRFSNGYMV--------TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 340 (499)
T ss_pred hhHHhhhcc-eeEEEEEeCCEEE--------EecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCc
Confidence 445544431 000000 000000 00000000011233444332 222456777888888
Q ss_pred EEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECC
Q 004302 418 TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIV 497 (762)
Q Consensus 418 rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~ 497 (762)
.|++|+.++++.-++..|.. .|.|-....+.+.|+-+.
T Consensus 341 TikvW~~st~efvRtl~gHk------------------------------------------RGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHK------------------------------------------RGIACLQYRDRLVVSGSS 378 (499)
T ss_pred eEEEEeccceeeehhhhccc------------------------------------------ccceehhccCeEEEecCC
Confidence 99999998876433333332 123333456889999999
Q ss_pred CCEEEEEECCCCcEEE
Q 004302 498 GQRIMRLNRESGVCSN 513 (762)
Q Consensus 498 NhRIrkidl~~~~~st 513 (762)
.+.||.++.+.|.+..
T Consensus 379 DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLR 394 (499)
T ss_pred CceEEEEeccccHHHH
Confidence 9999999999987753
No 289
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.62 E-value=20 Score=39.29 Aligned_cols=132 Identities=16% Similarity=0.144 Sum_probs=81.2
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEe---cCCCeEEEEeC--
Q 004302 267 PGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYH---KDDDCLYIVDS-- 338 (762)
Q Consensus 267 P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd---~~~g~LYVADt-- 338 (762)
.-.|..+ .+|++.||-..-+.|.+|+. +|+++=..|+. ..|.. ....|..-+..-+. +.++.|-|-|-
T Consensus 146 iNsV~~~-~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~IslFDN~~ 221 (299)
T PF14269_consen 146 INSVDKD-DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISLFDNAN 221 (299)
T ss_pred eeeeeec-CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEEEcCCC
Confidence 3456677 46789999999999999995 89999887652 22221 23344444444333 23566767775
Q ss_pred --------CCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEE
Q 004302 339 --------ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLL 410 (762)
Q Consensus 339 --------~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LY 410 (762)
...+|..+|+.+..+..+...- . .. .+.. -...-.+..-++|+++
T Consensus 222 ~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~--~-~~----------~~~~--------------s~~~G~~Q~L~nGn~l 274 (299)
T PF14269_consen 222 SDFNGTEPSRGLVLELDPETMTVTLVREYS--D-HP----------DGFY--------------SPSQGSAQRLPNGNVL 274 (299)
T ss_pred CCCCCCcCCCceEEEEECCCCEEEEEEEee--c-CC----------Cccc--------------ccCCCcceECCCCCEE
Confidence 3357888888877665553210 0 00 0000 0011123334789999
Q ss_pred EEECCCCEEEEEECCCCcE
Q 004302 411 IINRSFETLWIMDLASGEI 429 (762)
Q Consensus 411 VAD~gN~rI~v~d~~~g~I 429 (762)
|....+.++.-+++++..+
T Consensus 275 i~~g~~g~~~E~~~~G~vv 293 (299)
T PF14269_consen 275 IGWGNNGRISEFTPDGEVV 293 (299)
T ss_pred EecCCCceEEEECCCCCEE
Confidence 9999999999998876443
No 290
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.97 E-value=1.6 Score=41.53 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=35.7
Q ss_pred CCCEEEEEEec--------cCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcCC
Q 004302 107 GGAFLVLAGRF--------VDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 107 rGK~VvLnFWA--------tWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~~ 156 (762)
+|+-+++.|-+ +|||+| ++..|-+.+.-+..+. +.||-|.+++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdC-------V~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDC-------VAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchH-------HHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 67778888887 599987 9999999988777775 8888888775
No 291
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.81 E-value=77 Score=39.20 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=63.4
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
+++.++..+...++-..++.|+++|. +++.+..+.. . -..=.++++++.++.++++=+..+.|+.+|
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~---H---------~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE---H---------EKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC---C---------CCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 34444333333334344566666665 3444443311 1 011356778764566777777788999999
Q ss_pred CCCCEE-EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEc-CCCcEEEEECCCCEEEEEECC
Q 004302 348 MGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKS-EDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 348 ~~~g~I-~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd-~dG~LYVAD~gN~rI~v~d~~ 425 (762)
..++.. .++... .....+.+. ++|.++++-..++.|++||..
T Consensus 605 ~~~~~~~~~~~~~------------------------------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 605 INQGVSIGTIKTK------------------------------------ANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CCCCcEEEEEecC------------------------------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 875532 232110 013345553 357878877888999999986
Q ss_pred CCc
Q 004302 426 SGE 428 (762)
Q Consensus 426 ~g~ 428 (762)
++.
T Consensus 649 ~~~ 651 (793)
T PLN00181 649 NPK 651 (793)
T ss_pred CCC
Confidence 643
No 292
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=85.75 E-value=1.4 Score=48.01 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHH----HHHHCCC-eEEEEEEcCC
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKS----IQQSFPQ-LQVIGFLHGC 156 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~----L~~~y~~-v~VvgV~~~~ 156 (762)
-.+|+|||+|.||+-. +.=+|.+.+ ++++||+ =.|.| .++.
T Consensus 13 ~elvfv~FyAdWCrFS-------q~L~piF~EAa~~~~~e~P~~kvvwg-~VDc 58 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFS-------QMLKPIFEEAAAKFKQEFPEGKVVWG-KVDC 58 (375)
T ss_pred ceEEeeeeehhhchHH-------HHHhHHHHHHHHHHHHhCCCcceEEE-Eccc
Confidence 5699999999999755 888898877 5567776 33344 3554
No 293
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=85.39 E-value=4.4 Score=47.66 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=53.1
Q ss_pred ccccCCcceEEEecCCCeEEEEeCCCCeEEE-------EeCCCCEEEEEeecCCCCCCC-CchhhhhhhccCccccCCCc
Q 004302 315 SSKLMRPAASFYHKDDDCLYIVDSENHAIRR-------ADMGRRVLETVYPTSGISKKN-NSLWAWIMEKLGFERDNDTK 386 (762)
Q Consensus 315 ~a~fn~P~GIavd~~~g~LYVADt~NhrIRk-------id~~~g~I~TiaG~G~~~~~G-~~~~~~~~~~~G~~~~~~~~ 386 (762)
.+.+.+|.+|+++|..+.+|++.|.|.+--. =+ .-|.|..+...+. +..+ ..-|+.++.- |-..+....
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n-~~G~I~r~~p~~~-d~t~~~ftWdlF~~a-G~~~~~~~~ 489 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKN-GYGQIVRWIPATG-DHTDTKFTWDLFVEA-GNPSVLEGG 489 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccc-cccceEEEecCCC-CccCccceeeeeeec-CCccccccc
Confidence 4679999999999988899999998863200 00 1122222222210 0000 0112222110 100000000
Q ss_pred -cCCCCCCCCCCcceEEEcCCCcEEEEECCC
Q 004302 387 -SEKLDPQSLIFPWHLMKSEDDNLLIINRSF 416 (762)
Q Consensus 387 -~~~~~~~~L~~P~gIavd~dG~LYVAD~gN 416 (762)
+...++.-|+.|-+|++|+.|.|+|+.-++
T Consensus 490 ~~~~~~~~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 490 ASANINANWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred cccCcccccccCCCceEECCCCCEEEEecCC
Confidence 122233559999999999999999986443
No 294
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=85.23 E-value=2.2 Score=34.65 Aligned_cols=54 Identities=11% Similarity=-0.138 Sum_probs=32.9
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcC-CCcceeeC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEY-ITFPILLS 183 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~-itfPVl~D 183 (762)
|+-|+..||++| .+....|++. ++.+--++++. +.+...++.+..+ .++|.+.-
T Consensus 1 V~vy~~~~C~~C-------~~~~~~L~~~-----~i~y~~~dv~~------~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYC-------KKAKEFLDEK-----GIPYEEVDVDE------DEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHH-------HHHHHHHHHT-----TBEEEEEEGGG------SHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCH-------HHHHHHHHHc-----CCeeeEccccc------chhHHHHHHHHcCCCccCEEEE
Confidence 466899999866 7777777554 46666666665 3333333333324 46776654
No 295
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.89 E-value=66 Score=35.30 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcC
Q 004302 395 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKG 435 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G 435 (762)
+.+.-+|..+.+|+++|+-+..+.|++++..+|.|.=...|
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG 183 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGG 183 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCC
Confidence 33455678888899999999999999999999987644333
No 296
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.39 E-value=63 Score=37.16 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=71.1
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.++.+.+. |.-+++-++...+-..|. +|..++.+--. + .| ..=+..+++| +|.||.+-+.+.-|+.+
T Consensus 307 ~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~-s~--------v~~ts~~fHp-DgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 307 TGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDE-T-SD--------VEYTSAAFHP-DGLIFGTGTPDGVVKIW 374 (506)
T ss_pred eeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeec-c-cc--------ceeEEeeEcC-CceEEeccCCCceEEEE
Confidence 56777764 444455444444444444 67766655321 0 00 1134567887 79999999999999999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
|+.+....+-.+ |- -| --..|++..||+..+.-+....|+.||+..
T Consensus 375 dlks~~~~a~Fp-------gh---------t~------------------~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 375 DLKSQTNVAKFP-------GH---------TG------------------PVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred EcCCccccccCC-------CC---------CC------------------ceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 987654211111 00 01 124688888899888888778899999853
No 297
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=83.25 E-value=1e+02 Score=36.30 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=80.8
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
+=.+|-.+| +|..|++-.....|..||. +|..+..++...+...+ -.+|+..|+...+ .+=+....++
T Consensus 192 FV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs---------IfalsWsPDs~~~-~T~SaDkt~K 260 (603)
T KOG0318|consen 192 FVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS---------IFALSWSPDSTQF-LTVSADKTIK 260 (603)
T ss_pred ceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCcccc---------EEEEEECCCCceE-EEecCCceEE
Confidence 446677787 6899999999999999997 89999888764332222 4557777644443 3334455666
Q ss_pred EEeCCCCE-EEEEeecCCC--CCCCCchhhh----------hhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEE
Q 004302 345 RADMGRRV-LETVYPTSGI--SKKNNSLWAW----------IMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLI 411 (762)
Q Consensus 345 kid~~~g~-I~TiaG~G~~--~~~G~~~~~~----------~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYV 411 (762)
.+|..++. ++|+ ..|.. ++.-+.+|.- .++.+.. .+.............-+.+++.+||.-+.
T Consensus 261 IWdVs~~slv~t~-~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~---~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 261 IWDVSTNSLVSTW-PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP---SDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred EEEeeccceEEEe-ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc---cCCChhheecccccceeEEEEcCCCCEEE
Confidence 66665543 3333 22210 0000001100 0000000 00000011112233456778887766555
Q ss_pred EECCCCEEEEEECCCCcEE
Q 004302 412 INRSFETLWIMDLASGEIK 430 (762)
Q Consensus 412 AD~gN~rI~v~d~~~g~I~ 430 (762)
+-.+.+.|..|+..+|+-.
T Consensus 337 SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred eeccCceEEEEecCCcccc
Confidence 5566778888887666543
No 298
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=82.88 E-value=1.3 Score=40.85 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccccCc
Q 004302 146 QLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQMENGA 194 (762)
Q Consensus 146 ~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv 194 (762)
++.+|+|.+++ .+.+++|.+..+.+|||+.|++..+.+++|.
T Consensus 13 gv~lv~I~~g~-------~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 13 GVKLVVIGCGS-------PEGIEKFCELTGFPFPLYVDPERKLYKALGL 54 (115)
T ss_pred CCeEEEEEcCC-------HHHHHHHHhccCCCCcEEEeCcHHHHHHhCC
Confidence 58888888764 5569999999999999999999888888886
No 299
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=82.24 E-value=76 Score=37.34 Aligned_cols=124 Identities=14% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCC-CCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCC--E
Q 004302 276 GNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGF-EDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRR--V 352 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~-~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g--~ 352 (762)
.+..+++-+++-++.++|.+|..+..+-.|.-+ .|=.-+......=..-+.+|.+...|++=+..+.+|.++.... .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 444555567899999999999655433222111 1111111122223334667777888888888888888876532 3
Q ss_pred EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 353 LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 353 I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
...|...+. | |. . -.|+.-+++++|.++-|-..++.|+.|+..+..+
T Consensus 305 ~qVik~k~~----~-----------g~--R-------------v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 305 LQVIKTKPA----G-----------GK--R-------------VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV 351 (641)
T ss_pred eeEEeeccC----C-----------Cc--c-------------cCceeeecCCCcchhhhcccCCceeeeecCCccc
Confidence 333332221 0 10 0 1367778889999988889999999999755443
No 300
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.51 E-value=58 Score=39.58 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=83.1
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
++.=+-+++++.+..||-+- +++|..+|. +|.+....|.. -.+..=..+++++++..||.| ..+..
T Consensus 19 iYtGG~~~~s~nG~~L~t~~--~d~Vi~idv~t~~~~l~s~~~----------ed~d~ita~~l~~d~~~L~~a-~rs~l 85 (775)
T KOG0319|consen 19 IYTGGPVAWSSNGQHLYTAC--GDRVIIIDVATGSIALPSGSN----------EDEDEITALALTPDEEVLVTA-SRSQL 85 (775)
T ss_pred eecCCceeECCCCCEEEEec--CceEEEEEccCCceecccCCc----------cchhhhheeeecCCccEEEEe-eccce
Confidence 44444589997666666653 678888887 77775333331 123445668888866666555 45678
Q ss_pred EEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 343 IRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 343 IRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
+|.+++.++.+ +..|....-++ -..+++++.|.|.-+=---++|++|
T Consensus 86 lrv~~L~tgk~---------------irswKa~He~P------------------vi~ma~~~~g~LlAtggaD~~v~VW 132 (775)
T KOG0319|consen 86 LRVWSLPTGKL---------------IRSWKAIHEAP------------------VITMAFDPTGTLLATGGADGRVKVW 132 (775)
T ss_pred EEEEEcccchH---------------hHhHhhccCCC------------------eEEEEEcCCCceEEeccccceEEEE
Confidence 88888776522 12232111111 1357888777655555556899999
Q ss_pred ECCCCcEEEEEcCCceee
Q 004302 423 DLASGEIKEAVKGFSKVL 440 (762)
Q Consensus 423 d~~~g~I~ti~~G~g~~~ 440 (762)
|..++..+.-+.|.|.++
T Consensus 133 di~~~~~th~fkG~gGvV 150 (775)
T KOG0319|consen 133 DIKNGYCTHSFKGHGGVV 150 (775)
T ss_pred EeeCCEEEEEecCCCceE
Confidence 999999888888887443
No 301
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=81.39 E-value=1.2e+02 Score=35.71 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=83.2
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 396 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~ 396 (762)
+|--|.-|+-. .+.|||--+.|. |..=++++++-.++.|.|.
T Consensus 328 ~~G~iRtv~e~--~~di~vGTtrN~-iL~Gt~~~~f~~~v~gh~d----------------------------------- 369 (626)
T KOG2106|consen 328 QFGPIRTVAEG--KGDILVGTTRNF-ILQGTLENGFTLTVQGHGD----------------------------------- 369 (626)
T ss_pred hcCCeeEEecC--CCcEEEeeccce-EEEeeecCCceEEEEeccc-----------------------------------
Confidence 44445555553 344777666554 3333455565555555431
Q ss_pred CcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCC
Q 004302 397 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 476 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p 476 (762)
.=||+|..+..++|++-.....++.|+...-+.+.++ +++ .-..+-.|
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~-~d~-------------------------------~~~~~fhp 417 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII-EDP-------------------------------AECADFHP 417 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEe-cCc-------------------------------eeEeeccC
Confidence 3578888888999999988888999983222233332 221 00111122
Q ss_pred CcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEEEeeccccc
Q 004302 477 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAI 521 (762)
Q Consensus 477 ~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~~G~ 521 (762)
.+ ..++-...|+.+|-|+.++-...+..++..++.+.|+-.|-
T Consensus 418 sg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 418 SG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGA 460 (626)
T ss_pred cc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCC
Confidence 21 24555677899999999999999988988898888877664
No 302
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.90 E-value=36 Score=41.49 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=79.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
++|++.|.+++-||+-+-.|+|++++. +-+++...-- + ..=+.+++.| +|.-.|.-+.|+..|.+
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl------------~-~lITAvcy~P-dGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL------------R-DLITAVCYSP-DGKGAVIGTFNGYCRFY 478 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhh------------h-hhheeEEecc-CCceEEEEEeccEEEEE
Confidence 678889999999999999999999997 4455554321 1 2356789998 58888899999999999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC--CcEEEEECCCCEEEEEEC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED--DNLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d--G~LYVAD~gN~rI~v~d~ 424 (762)
+..+....+-.-.-....+. .+=..-+|+.+.+. ..|.|+- ...|||+||.
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk--------------------------~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~ 531 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKK--------------------------KQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDG 531 (712)
T ss_pred EccCCeEEEeeeEeeccCcc--------------------------ccCceeeeeEecCCCCCeEEEec-CCCceEEEec
Confidence 98776554432111000000 00013556666642 2466654 5679999998
Q ss_pred CCCc
Q 004302 425 ASGE 428 (762)
Q Consensus 425 ~~g~ 428 (762)
....
T Consensus 532 ~~~~ 535 (712)
T KOG0283|consen 532 RDKD 535 (712)
T ss_pred cchh
Confidence 5443
No 303
>PHA02713 hypothetical protein; Provisional
Probab=80.49 E-value=70 Score=38.08 Aligned_cols=31 Identities=3% Similarity=0.138 Sum_probs=19.6
Q ss_pred eEEEcCCCcEEEEECC------CCEEEEEECCC-CcEEE
Q 004302 400 HLMKSEDDNLLIINRS------FETLWIMDLAS-GEIKE 431 (762)
Q Consensus 400 gIavd~dG~LYVAD~g------N~rI~v~d~~~-g~I~t 431 (762)
++++- +|.|||.--. ...+.+||+.+ ...+.
T Consensus 458 ~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 458 GVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred cEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 45543 6899998422 13467888877 56653
No 304
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.33 E-value=14 Score=44.56 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=70.7
Q ss_pred cCCcceEEEccCCCEEEEE-eCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCC
Q 004302 264 LHFPGCISADESGNRLFLS-DSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVA-Ds~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~N 340 (762)
|.-=.++.+.| +. -||+ -+..+.++.+|. +|..+++|- |. ..| ..++++| .|.-.++-...
T Consensus 535 lsDV~cv~FHP-Ns-~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH----------~~~V~al~~Sp-~Gr~LaSg~ed 598 (707)
T KOG0263|consen 535 LSDVDCVSFHP-NS-NYVATGSSDRTVRLWDVSTGNSVRIFT---GH----------KGPVTALAFSP-CGRYLASGDED 598 (707)
T ss_pred ccccceEEECC-cc-cccccCCCCceEEEEEcCCCcEEEEec---CC----------CCceEEEEEcC-CCceEeecccC
Confidence 33444556665 22 2333 345677888876 777777772 21 113 6788888 44444555567
Q ss_pred CeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
+.|..+|+.++. +.++.|. .| .=..|.++.+|+++|++.++|.|
T Consensus 599 ~~I~iWDl~~~~~v~~l~~H-----t~------------------------------ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGH-----TG------------------------------TIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred CcEEEEEcCCCcchhhhhcc-----cC------------------------------ceeEEEEecCCCEEEecCCCCeE
Confidence 889999987643 3333222 01 12357778899999999999999
Q ss_pred EEEECC
Q 004302 420 WIMDLA 425 (762)
Q Consensus 420 ~v~d~~ 425 (762)
+.||..
T Consensus 644 ~lWD~~ 649 (707)
T KOG0263|consen 644 RLWDLT 649 (707)
T ss_pred EEEEch
Confidence 999975
No 305
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.13 E-value=34 Score=36.06 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=41.0
Q ss_pred CcceEEEccCCCEEEEEe--CCCcEEEEEcCC-CcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 266 FPGCISADESGNRLFLSD--SNHHRIIVFDGN-GKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVAD--s~nhrI~v~d~~-G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
+-.|+-.+ +|+||.+- .++.+|++.|.+ |+++..---. .-|+ .||..- ++.+|.--+..
T Consensus 47 fTQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg------------EGit~~--gd~~y~LTw~e 110 (262)
T COG3823 47 FTQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG------------EGITKL--GDYFYQLTWKE 110 (262)
T ss_pred hhcceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc------------cceeec--cceEEEEEecc
Confidence 44677777 67888876 489999999995 7776532111 1111 234442 55666666555
Q ss_pred CeEEEEeCC
Q 004302 341 HAIRRADMG 349 (762)
Q Consensus 341 hrIRkid~~ 349 (762)
+.=.++|..
T Consensus 111 gvaf~~d~~ 119 (262)
T COG3823 111 GVAFKYDAD 119 (262)
T ss_pred ceeEEEChH
Confidence 555566543
No 306
>PRK01029 tolB translocation protein TolB; Provisional
Probab=79.85 E-value=1.2e+02 Score=34.79 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=24.5
Q ss_pred EEecCCEEEEEEC--CCCEEEEEECCCCcEEEEeeccccccCCCcee
Q 004302 484 SIAFQNHILLCDI--VGQRIMRLNRESGVCSNFQFSNFAILGLPYWF 528 (762)
Q Consensus 484 v~~~~g~LYVADt--~NhRIrkidl~~~~~sti~~s~~G~lG~p~~~ 528 (762)
+++++..|+++.. +..+|..+|++++....++.. .+....|.|.
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wS 379 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWA 379 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEEC
Confidence 3445555554432 235788888888887765422 2233446553
No 307
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=79.78 E-value=1.3e+02 Score=35.19 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=39.2
Q ss_pred CCEEE-EEeC-CCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCC-cceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 276 GNRLF-LSDS-NHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMR-PAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 276 ~g~LY-VADs-~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~-P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
++++| ++|. +-+.|+-.|.+|+=++---+ |.|--.. .+|. =.-|.+. ..|.||+-|..+.+|-+++..
T Consensus 235 ~~RvYFlsD~eG~GnlYSvdldGkDlrrHTn---FtdYY~R--~~nsDGkrIvFq-~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 235 GERVYFLSDHEGVGNLYSVDLDGKDLRRHTN---FTDYYPR--NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred cceEEEEecccCccceEEeccCCchhhhcCC---chhcccc--ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecC
Confidence 45665 7775 56677777777754322111 1111000 0111 1346666 488999999999999998754
No 308
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=79.66 E-value=4.6 Score=33.84 Aligned_cols=53 Identities=13% Similarity=-0.079 Sum_probs=30.2
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC--Ccceee
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI--TFPILL 182 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i--tfPVl~ 182 (762)
|.-|..+||+.| .+....|+++ ++.+--++++. +.+...++.+..+. ++|++.
T Consensus 2 i~ly~~~~Cp~C-------~~ak~~L~~~-----~i~~~~i~i~~------~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYC-------VRAKALLDKK-----GVDYEEIDVDG------DPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHH-------HHHHHHHHHC-----CCcEEEEECCC------CHHHHHHHHHHhCCCCccCEEE
Confidence 456888999755 6665555543 44444555554 34445555555443 456544
No 309
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.51 E-value=38 Score=39.17 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=49.4
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE-EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 322 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 322 ~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~-TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
+-+-+.+.++.+++.-+....++.+|+.+..+. ++.|.- | +-+.
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht-----------------------D------------YVR~ 158 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT-----------------------D------------YVRC 158 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc-----------------------c------------eeEe
Confidence 445567777888888888888889999888874 222210 0 2333
Q ss_pred EEEcC-CCcEEEEECCCCEEEEEECCC
Q 004302 401 LMKSE-DDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 401 Iavd~-dG~LYVAD~gN~rI~v~d~~~ 426 (762)
.++.+ ++.+.++-.+.|.|+.||...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEecc
Confidence 44444 588999999999999999764
No 310
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=79.41 E-value=84 Score=39.15 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=68.2
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCC-----cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNG-----KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE 339 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-----~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~ 339 (762)
..=..|+.|+++..|+++++ +.-|++++.+- .++... | ..-.+|+.. .+.|++-+.
T Consensus 14 ~G~t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~~--------g-------~~v~~ia~~---s~~f~~~s~ 74 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDIS--------G-------ELVSSIACY---SNHFLTGSE 74 (933)
T ss_pred CceEEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhcc--------C-------ceeEEEeec---ccceEEeec
Confidence 33467888887777777765 34455554321 111111 1 112445553 457888888
Q ss_pred CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCc-ceEEEcCCCcEEEEECCCCE
Q 004302 340 NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP-WHLMKSEDDNLLIINRSFET 418 (762)
Q Consensus 340 NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P-~gIavd~dG~LYVAD~gN~r 418 (762)
+|.|.++....+.-.++ -++|..| +.++|+.+|...++=...-.
T Consensus 75 ~~tv~~y~fps~~~~~i-----------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~ 119 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTI-----------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTA 119 (933)
T ss_pred cceEEEeeCCCCCccce-----------------------------------eeeeeccceEEEEecCCcEEEeecCcee
Confidence 99998886543332222 1235555 57888888888888776667
Q ss_pred EEEEECCCCcEEEEEcC
Q 004302 419 LWIMDLASGEIKEAVKG 435 (762)
Q Consensus 419 I~v~d~~~g~I~ti~~G 435 (762)
|..++.......+.+.|
T Consensus 120 vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 120 VKLLNLDDSSQEKVLRG 136 (933)
T ss_pred EEEEeccccchheeecc
Confidence 77777766544444333
No 311
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.21 E-value=0.82 Score=53.46 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=43.7
Q ss_pred CEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC---C-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCC-ccee
Q 004302 109 AFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP---Q-LQVIGFLHGCSTISAVDQTRLVEMLMKEYIT-FPIL 181 (762)
Q Consensus 109 K~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~---~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~it-fPVl 181 (762)
|.-+|.|+++||+ +| +.--|.++++.+.-. . |.|-+|++.+ +.=.+...+++|+ ||.+
T Consensus 58 ~~~lVEFy~swCG-----hC--r~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--------~~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCG-----HC--RAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--------EENVKLCREFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhh-----hh--hhcchHHHHHHHHHhcccceeEEEEeeccc--------hhhhhhHhhcCCCCCcee
Confidence 4557899999998 55 999999999988654 3 7777887764 2334667788886 4765
No 312
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=78.97 E-value=62 Score=37.72 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEE
Q 004302 395 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti 432 (762)
|..-..+.++++|...|+--.+-.||++|.++|.++.+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 55566788999988555544567899999999988755
No 313
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=78.79 E-value=4.2 Score=34.58 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=34.1
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHh-cCC-CcceeeC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMK-EYI-TFPILLS 183 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k-~~i-tfPVl~D 183 (762)
|+-|-+.|||+| .+.-+.|+++... ++++=|+... +...+++++++ .+. ++|++..
T Consensus 2 v~~y~~~~Cp~C-------~~~~~~l~~~~~~---~~~~~v~~~~------~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYC-------KRAKSLLKELGVK---PAVVELDQHE------DGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHH-------HHHHHHHHHcCCC---cEEEEEeCCC------ChHHHHHHHHHHhCCCCCCeEEE
Confidence 345668999865 8888888877542 4555555543 33555555554 344 5666543
No 314
>PHA03050 glutaredoxin; Provisional
Probab=78.66 E-value=2.8 Score=39.02 Aligned_cols=50 Identities=4% Similarity=-0.120 Sum_probs=31.2
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhc
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKE 174 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~ 174 (762)
|+-|..+|||.| .+..-.|+++.-+++.+.++-|.-.. +...+++.+++.
T Consensus 15 V~vys~~~CPyC-------~~ak~~L~~~~i~~~~~~~i~i~~~~------~~~~~~~~l~~~ 64 (108)
T PHA03050 15 VTIFVKFTCPFC-------RNALDILNKFSFKRGAYEIVDIKEFK------PENELRDYFEQI 64 (108)
T ss_pred EEEEECCCChHH-------HHHHHHHHHcCCCcCCcEEEECCCCC------CCHHHHHHHHHH
Confidence 456789999865 88888887775545556666665322 233455555543
No 315
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.63 E-value=92 Score=34.49 Aligned_cols=95 Identities=11% Similarity=0.123 Sum_probs=51.0
Q ss_pred hhccCCCCcccccCcccCC---cceEEEccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcce
Q 004302 248 EVLKEPHACSSVRNLLLHF---PGCISADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAA 323 (762)
Q Consensus 248 ~~~~~~~~~~~~~~~~L~~---P~gIAVD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~G 323 (762)
.++--.-|.+|-...+|+. -.|+.|+ ++..||||-. .-.+++|.+. +-=..+|.... .+|. -+-
T Consensus 109 ~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadld-dgfLivdvsdpssP~lagrya~-~~~d--------~~~ 176 (370)
T COG5276 109 RIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLD-DGFLIVDVSDPSSPQLAGRYAL-PGGD--------THD 176 (370)
T ss_pred EEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeecc-CcEEEEECCCCCCceeeeeecc-CCCC--------cee
Confidence 3444344445544445543 4567775 8999999973 3445555422 11122333110 0111 155
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEe
Q 004302 324 SFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY 357 (762)
Q Consensus 324 Iavd~~~g~LYVADt~NhrIRkid~~~g~I~Tia 357 (762)
++++ ++.-|||+.+++ +..+|.....=-++.
T Consensus 177 v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli 207 (370)
T COG5276 177 VAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLI 207 (370)
T ss_pred EEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEE
Confidence 8886 789999998765 455665444333343
No 316
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=78.58 E-value=5.5 Score=35.11 Aligned_cols=37 Identities=5% Similarity=-0.221 Sum_probs=25.9
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHG 155 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~ 155 (762)
|+-|-.+|||.| .+..-.|+++..+++++.+.-+++.
T Consensus 2 V~vys~~~Cp~C-------~~ak~~L~~~~~~~~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYC-------VRAKQLAEKLAIERADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccH-------HHHHHHHHHhCcccCCCcEEEEECC
Confidence 445667899755 8888888888777666555555554
No 317
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=78.46 E-value=63 Score=35.80 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=71.4
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcCCCc-EEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDGNGK-ILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~~G~-i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+.+.| ...|.++-+..+.|..||-.-. ....+-. +.| ..| ..|.++|.++.| .+-+....+|.+
T Consensus 177 ~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~---~qd--------~~~vrsiSfHPsGefl-lvgTdHp~~rlY 243 (430)
T KOG0640|consen 177 DLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKV---FQD--------TEPVRSISFHPSGEFL-LVGTDHPTLRLY 243 (430)
T ss_pred ceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHH---hhc--------cceeeeEeecCCCceE-EEecCCCceeEE
Confidence 456666 5779999999999999986421 1111110 001 123 678999955444 456677788999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
|.++-+. ++... ++ ++--..-..|-+++.|.|||+-+..+.|+.||.-+
T Consensus 244 dv~T~Qc--fvsan-Pd----------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 244 DVNTYQC--FVSAN-PD----------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred eccceeE--eeecC-cc----------------------------cccccceeEEEecCCccEEEEeccCCcEEeecccc
Confidence 8754432 22111 10 01111245677888999999999999999998654
Q ss_pred C
Q 004302 427 G 427 (762)
Q Consensus 427 g 427 (762)
+
T Consensus 293 ~ 293 (430)
T KOG0640|consen 293 N 293 (430)
T ss_pred H
Confidence 4
No 318
>PHA02713 hypothetical protein; Provisional
Probab=78.18 E-value=1.6e+02 Score=35.18 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=41.9
Q ss_pred ceEEEccCCCEEEEEeCC------CcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 268 GCISADESGNRLFLSDSN------HHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~------nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.++++- ++.|||.=.. .+.+.++|+.. ++.. +..-+ .++ ..+ +++.- ++.|||.-..+
T Consensus 297 ~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~--------~~R-~~~-~~~~~--~g~IYviGG~~ 361 (557)
T PHA02713 297 YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMI--------KNR-CRF-SLAVI--DDTIYAIGGQN 361 (557)
T ss_pred eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCc--------chh-hce-eEEEE--CCEEEEECCcC
Confidence 355554 6889987432 14577777733 3322 21100 001 122 34443 68999987543
Q ss_pred -----CeEEEEeCCCCEEEEEe
Q 004302 341 -----HAIRRADMGRRVLETVY 357 (762)
Q Consensus 341 -----hrIRkid~~~g~I~Tia 357 (762)
+.|.++|+.++..+.++
T Consensus 362 ~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 362 GTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CCCCCceEEEEECCCCeEEECC
Confidence 35888888887777664
No 319
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=77.11 E-value=4.4 Score=34.63 Aligned_cols=21 Identities=5% Similarity=-0.418 Sum_probs=15.2
Q ss_pred EEEeccCCCCccCCCCcchhhcHHHHHH
Q 004302 113 LAGRFVDNCDSLIAGCGTVVTFEKVKSI 140 (762)
Q Consensus 113 LnFWAtWC~pC~~p~C~~~~emP~L~~L 140 (762)
.-|+.+||++| .+....|+++
T Consensus 2 ~ly~~~~Cp~C-------~~a~~~L~~~ 22 (79)
T TIGR02181 2 TIYTKPYCPYC-------TRAKALLSSK 22 (79)
T ss_pred EEEecCCChhH-------HHHHHHHHHc
Confidence 45889999865 7777667654
No 320
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=76.79 E-value=95 Score=34.22 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=85.8
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.++.+.|++++.||+-.-...-..+|. +|.....|- |.. .+ -..|.+.| +|.=|++-+++...|.|
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghe-sD--------INsv~ffP-~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHE-SD--------INSVRFFP-SGDAFATGSDDATCRLY 256 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeec---ccc-cc--------cceEEEcc-CCCeeeecCCCceeEEE
Confidence 456777778999999988888888887 666555442 211 11 23466776 56777888889999999
Q ss_pred eCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
|+... .+..+.... ....-..|+++..|.|+.|-..+..+.+||.-
T Consensus 257 DlRaD~~~a~ys~~~---------------------------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 257 DLRADQELAVYSHDS---------------------------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred eecCCcEEeeeccCc---------------------------------ccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 98653 555553211 01123578888889999998888999999987
Q ss_pred CCcEEEEEcCCc
Q 004302 426 SGEIKEAVKGFS 437 (762)
Q Consensus 426 ~g~I~ti~~G~g 437 (762)
.++...+..|..
T Consensus 304 k~e~vg~L~GHe 315 (343)
T KOG0286|consen 304 KGERVGVLAGHE 315 (343)
T ss_pred ccceEEEeeccC
Confidence 776555555555
No 321
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.50 E-value=77 Score=38.63 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=56.3
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEE-----eceehh----hhhhhhccCCc-cccccccCC
Q 004302 399 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEI-----CGVLVM----EKVFLLKQMPQ-DWLLHQIDS 468 (762)
Q Consensus 399 ~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~-----~G~~~~----~r~~~~~~~p~-~~~~~~~d~ 468 (762)
..+.+.|+.+..-+-...++||.||..+|...++|.|.-..++. ||.... ..+..+.+.+. .....
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~---- 614 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ---- 614 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh----
Confidence 35777787664444566778999999999988999886644332 343210 01111111111 00000
Q ss_pred cccccCCCCcceeeeEE-ecCCEEEEEECCCCEEEEEECCCC
Q 004302 469 SCSLKELPYAGLISSSI-AFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 469 ~~~~~~~p~~~lgsav~-~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
+.+. ...+.++. ..+|.+.|++..++.|+.+|+..-
T Consensus 615 ---l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 615 ---LKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---hhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 0111 11112222 457788888888888888887643
No 322
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=74.89 E-value=36 Score=38.84 Aligned_cols=161 Identities=11% Similarity=-0.018 Sum_probs=94.0
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
+..=..|++.| +|+...+-+..+.=+.+|.+.+.....- +|.. ..=.+|++.+ +|-|..+-....-=
T Consensus 261 ~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~Q--EGHs---------~~v~~iaf~~-DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 261 LARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQ--EGHS---------KGVFSIAFQP-DGSLAATGGLDSLG 327 (459)
T ss_pred hhhheeeeecC-CCceeeecccccchhhcccccchhhHhh--cccc---------cccceeEecC-CCceeeccCccchh
Confidence 44445566676 3444444455555555555322111110 2221 2246788887 67776655545555
Q ss_pred EEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEE
Q 004302 344 RRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIM 422 (762)
Q Consensus 344 Rkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~ 422 (762)
|++|+.+| .|..++|. +..-.+|+++|+|+...+-.+.+.+++|
T Consensus 328 RvWDlRtgr~im~L~gH-----------------------------------~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGH-----------------------------------IKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred heeecccCcEEEEeccc-----------------------------------ccceeeEeECCCceEEeecCCCCcEEEe
Confidence 77887655 56666543 1235689999999999999999999999
Q ss_pred ECCCCc-EEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEE
Q 004302 423 DLASGE-IKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRI 501 (762)
Q Consensus 423 d~~~g~-I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRI 501 (762)
|+.... +.+|. +.. |..++ +-+.+..|...|+-++.+.+
T Consensus 373 DLR~r~~ly~ip-AH~----------------------nlVS~-----------------Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 373 DLRMRSELYTIP-AHS----------------------NLVSQ-----------------VKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred eecccccceecc-ccc----------------------chhhh-----------------eEecccCCeEEEEcccCcce
Confidence 986432 22220 000 11100 22233457788888888888
Q ss_pred EEEECCCCcEE
Q 004302 502 MRLNRESGVCS 512 (762)
Q Consensus 502 rkidl~~~~~s 512 (762)
+.+...+..+.
T Consensus 413 kiWs~~~~~~~ 423 (459)
T KOG0272|consen 413 KIWSTRTWSPL 423 (459)
T ss_pred eeecCCCcccc
Confidence 88887765543
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.50 E-value=18 Score=40.37 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=52.5
Q ss_pred Ccce---EEEccCCCEEEEEeC----CCc-----EEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcc-eEEEecCCC
Q 004302 266 FPGC---ISADESGNRLFLSDS----NHH-----RIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPA-ASFYHKDDD 331 (762)
Q Consensus 266 ~P~g---IAVD~s~g~LYVADs----~nh-----rI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~-GIavd~~~g 331 (762)
.|+| +|+++..++|||... +.| .|+++|. +++.+..+- +..|. +|+++.++.
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--------------l~~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--------------LEHPIDSIAVSQDDK 301 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--------------EEEEESEEEEESSSS
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--------------CCCccceEEEccCCC
Confidence 4655 788888899999762 222 3999998 677666552 22233 688876433
Q ss_pred -eEEEEeCCCCeEEEEeCCCC-EEEEEeec
Q 004302 332 -CLYIVDSENHAIRRADMGRR-VLETVYPT 359 (762)
Q Consensus 332 -~LYVADt~NhrIRkid~~~g-~I~TiaG~ 359 (762)
.||.++.++.-|.++|..+| .+.++.+-
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred cEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 78888988899999998776 45555433
No 324
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=74.00 E-value=1.3e+02 Score=32.16 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=74.4
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEE-eCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIV-DSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVA-Dt~NhrIRki 346 (762)
.||-+=|.+|.||-. ...+||+.+|...-..+.+|... +..+.-..+.|+-++|.-++|.|. +++. =.|+
T Consensus 30 ~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~------~~~al~g~~~gvDFNP~aDRlRvvs~~Gq--NlR~ 100 (236)
T PF14339_consen 30 VGIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASP------LTVALSGTAFGVDFNPAADRLRVVSNTGQ--NLRL 100 (236)
T ss_pred EEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeeccc------ccccccCceEEEecCcccCcEEEEccCCc--EEEE
Confidence 466666889999954 44689999998433344555320 011111237889999887888876 4433 3556
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCc--ceEEEcC-------CCcEEEEECCCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP--WHLMKSE-------DDNLLIINRSFE 417 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P--~gIavd~-------dG~LYVAD~gN~ 417 (762)
++++|.+.+.-|.=. --.|+ .. .. ..| .+.|+.. .-.||-.|...+
T Consensus 101 npdtGav~~~Dg~L~-y~~gd---------------~~-------~G--~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~ 155 (236)
T PF14339_consen 101 NPDTGAVTIVDGNLA-YAAGD---------------MN-------AG--TTPGVTAAAYTNSFAGATTSTTLYDIDTTLD 155 (236)
T ss_pred CCCCCCceeccCccc-cCCCc---------------cc-------cC--CCCceEEEEEecccCCCccceEEEEEecCCC
Confidence 677776443321100 00000 00 00 011 2233321 247999999999
Q ss_pred EEEEE-ECCCCcEEEE
Q 004302 418 TLWIM-DLASGEIKEA 432 (762)
Q Consensus 418 rI~v~-d~~~g~I~ti 432 (762)
++++- .+.+|.+.++
T Consensus 156 ~Lv~Q~ppN~GtL~~v 171 (236)
T PF14339_consen 156 ALVTQNPPNDGTLNTV 171 (236)
T ss_pred eEEEecCCCCCcEEee
Confidence 99888 6677877665
No 325
>smart00284 OLF Olfactomedin-like domains.
Probab=72.60 E-value=1.5e+02 Score=32.13 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC--
Q 004302 330 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-- 407 (762)
Q Consensus 330 ~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-- 407 (762)
++.||.--...+.|.|+|+.++.+....--...+..+..+..| |. ..=-++|+|.+|
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~-----~~----------------~sdiDlAvDE~GLW 141 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAW-----GG----------------FSDIDLAVDENGLW 141 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCcccccccccccc-----CC----------------CccEEEEEcCCceE
Confidence 6899998888889999999998875332111000000000000 00 112478998666
Q ss_pred cEEEEECCCCEE--EEEECCCCcEEEEEc-C-----CceeeEEeceeh
Q 004302 408 NLLIINRSFETL--WIMDLASGEIKEAVK-G-----FSKVLEICGVLV 447 (762)
Q Consensus 408 ~LYVAD~gN~rI--~v~d~~~g~I~ti~~-G-----~g~~~~~~G~~~ 447 (762)
.||-+...++.| -++|+.+=.|...+. + -+...-+||.+-
T Consensus 142 vIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY 189 (255)
T smart00284 142 VIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGILY 189 (255)
T ss_pred EEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEE
Confidence 244444444444 588887755544331 1 223455788763
No 326
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=71.22 E-value=3.3 Score=31.36 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=17.7
Q ss_pred CCcceEEEcCCCcEEEEECCC
Q 004302 396 IFPWHLMKSEDDNLLIINRSF 416 (762)
Q Consensus 396 ~~P~gIavd~dG~LYVAD~gN 416 (762)
..|.+|++|++|++||+=..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 369999999999999986544
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.12 E-value=1.7e+02 Score=32.39 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=43.1
Q ss_pred cceEEEccCCC-EEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEe----CCC
Q 004302 267 PGCISADESGN-RLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVD----SEN 340 (762)
Q Consensus 267 P~gIAVD~s~g-~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVAD----t~N 340 (762)
.++++++|... -++++-.=-.-..+||. +|+....+-..+| +-.+=+|++ ++++..||.++ ++.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g---------RHFyGHg~f-s~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG---------RHFYGHGVF-SPDGRLLYTTENDYETGR 76 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC---------CEEecCEEE-cCCCCEEEEeccccCCCc
Confidence 46677776333 33455554555667776 5565554433221 111224454 45788999885 445
Q ss_pred CeEEEEeCCCC
Q 004302 341 HAIRRADMGRR 351 (762)
Q Consensus 341 hrIRkid~~~g 351 (762)
++|-++|...+
T Consensus 77 G~IgVyd~~~~ 87 (305)
T PF07433_consen 77 GVIGVYDAARG 87 (305)
T ss_pred EEEEEEECcCC
Confidence 79999998733
No 328
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=71.03 E-value=1.9e+02 Score=32.79 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=76.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..|+.+| +.++.++-.+..+=++++. +|.+.... .|+.|. =..+.++. ++.+..+--..+.|+++
T Consensus 68 Favsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el---tgHKDS---------Vt~~~Fsh-dgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 68 FAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL---TGHKDS---------VTCCSFSH-DGTLLATGDMSGKVLVF 133 (399)
T ss_pred EEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe---cCCCCc---------eEEEEEcc-CceEEEecCCCccEEEE
Confidence 3577888 7889999899999888887 67654443 444443 34566765 45555555567788888
Q ss_pred eCCCCEEE-EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I~-TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
...++... ++.+.++ .=.-+...|.+.++.|-.....||+|...
T Consensus 134 ~~stg~~~~~~~~e~~-----------------------------------dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVE-----------------------------------DIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred EcccCceEEEeecccC-----------------------------------ceEEEEecccccEEEeecCCCcEEEEECC
Confidence 87666443 3322110 01123344566777788888889999987
Q ss_pred CCcEEEEEcCCc
Q 004302 426 SGEIKEAVKGFS 437 (762)
Q Consensus 426 ~g~I~ti~~G~g 437 (762)
++....++.|..
T Consensus 179 ~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 179 SQALCKVMSGHN 190 (399)
T ss_pred CcceeeEecCCC
Confidence 755455655544
No 329
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.82 E-value=11 Score=39.50 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=55.2
Q ss_pred CccccCCC-CCC--EEEEEE-ecc-CCCCccCCCCcchhhcHHHHHHHHH--CCCeEEEEEEcCCCccCcCCHHHHHHHH
Q 004302 99 DNIHFFKR-GGA--FLVLAG-RFV-DNCDSLIAGCGTVVTFEKVKSIQQS--FPQLQVIGFLHGCSTISAVDQTRLVEML 171 (762)
Q Consensus 99 ~~v~Lsd~-rGK--~VvLnF-WAt-WC~pC~~p~C~~~~emP~L~~L~~~--y~~v~VvgV~~~~~~~~e~~~~~v~~f~ 171 (762)
...+|+|+ .|| .+|-+| +++ |-.+| |+| -.-+.+++-.-.. ..|+.++.|+-. ..+++..|-
T Consensus 62 G~~sLadLF~grsqLIvYhfmF~P~~~~~C--~gC--S~laD~~dGa~~HL~~~dv~lv~VsRA-------Pl~~l~~~k 130 (247)
T COG4312 62 GKKSLADLFGGRSQLIVYHFMFGPGWDHGC--PGC--SFLADHWDGAVAHLEHHDVTLVAVSRA-------PLEELVAYK 130 (247)
T ss_pred cchhHHHHhCCCceEEEEEEecCCCccCCC--Cch--hhHHhhhhhhhhhHhhcCceEEEEecC-------cHHHHHHHH
Confidence 35677664 565 333333 344 66666 899 5555555332222 235888888754 589999999
Q ss_pred HhcCCCcceeeCCCCccccccC
Q 004302 172 MKEYITFPILLSNKNFPQMENG 193 (762)
Q Consensus 172 ~k~~itfPVl~D~~~~~~~~yg 193 (762)
++.|.+||.+-+.++....-|.
T Consensus 131 ~rmGW~f~w~Ss~~s~Fn~Df~ 152 (247)
T COG4312 131 RRMGWQFPWVSSTDSDFNRDFQ 152 (247)
T ss_pred HhcCCcceeEeccCcccccccc
Confidence 9999999999887765555453
No 330
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=70.74 E-value=41 Score=28.80 Aligned_cols=70 Identities=14% Similarity=0.013 Sum_probs=39.9
Q ss_pred eccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccccCce
Q 004302 116 RFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQMENGAC 195 (762)
Q Consensus 116 WAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv~ 195 (762)
...+|+. | ......++++.++++ +.+=-+... +. .+. +++++ ..+|
T Consensus 6 ~~~~C~~-----C--~~~~~~~~~~~~~~~-i~~ei~~~~-------~~---~~~-~~ygv---------------~~vP 51 (76)
T PF13192_consen 6 FSPGCPY-----C--PELVQLLKEAAEELG-IEVEIIDIE-------DF---EEI-EKYGV---------------MSVP 51 (76)
T ss_dssp ECSSCTT-----H--HHHHHHHHHHHHHTT-EEEEEEETT-------TH---HHH-HHTT----------------SSSS
T ss_pred eCCCCCC-----c--HHHHHHHHHHHHhcC-CeEEEEEcc-------CH---HHH-HHcCC---------------CCCC
Confidence 4677874 5 888888888888885 444333221 12 222 44442 2466
Q ss_pred EEEEcCCCCEEEEecC-CcCHHHHHHHHH
Q 004302 196 YLLSKDFGNARVFHEN-SLDIGMLNKAVE 223 (762)
Q Consensus 196 t~lId~~G~iv~~~~G-~~~~~~L~~~l~ 223 (762)
+++|| |++ ++.| ..+.++|+++|+
T Consensus 52 alvIn--g~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 52 ALVIN--GKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEET--TEE--EEESS--HHHHHHHHHH
T ss_pred EEEEC--CEE--EEEecCCCHHHHHHHhC
Confidence 78887 444 3667 555666776664
No 331
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.55 E-value=63 Score=37.02 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=78.3
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEE
Q 004302 265 HFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIR 344 (762)
Q Consensus 265 ~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIR 344 (762)
..+...|-.| ++.=+|+-+-...|...|.+|+++... .|.++ -.-..+++.+++..+|..+. ..+|+
T Consensus 313 ~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W---~gvr~--------~~v~dlait~Dgk~vl~v~~-d~~i~ 379 (519)
T KOG0293|consen 313 FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNW---EGVRD--------PKVHDLAITYDGKYVLLVTV-DKKIR 379 (519)
T ss_pred CCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcc---ccccc--------ceeEEEEEcCCCcEEEEEec-cccee
Confidence 4555666676 455588887788999999999886544 22211 12367888888888888884 45788
Q ss_pred EEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCC-cceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 345 RADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF-PWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 345 kid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~-P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
.++.+...-..+.. ... -+.+.++.+|.+.+.+-.++.|+.||
T Consensus 380 l~~~e~~~dr~lis------------------------------------e~~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 380 LYNREARVDRGLIS------------------------------------EEQPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred eechhhhhhhcccc------------------------------------ccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 88765432111100 011 25688888999999999999999999
Q ss_pred CCCCc
Q 004302 424 LASGE 428 (762)
Q Consensus 424 ~~~g~ 428 (762)
.+...
T Consensus 424 l~e~~ 428 (519)
T KOG0293|consen 424 LEENK 428 (519)
T ss_pred cchhh
Confidence 98554
No 332
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=13 Score=39.07 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=43.9
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecC-CCCCCCCcccccccCCcceEEEecCCCeEEEEeC
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGS-CPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDS 338 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGs-G~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt 338 (762)
+|.||---.-..||.++++ +|+++..+-- +--..- .......+-+.|||++++.+++||+-.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~-~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKEL-NLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhc-CccccccccccceeecCcCCeEEEecC
Confidence 4778877777889999999 7999988754 200000 111234678999999998889999763
No 333
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=69.94 E-value=1.5e+02 Score=37.18 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=75.5
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRki 346 (762)
+|+.+ ...|++-+.+|.|.++.. +|..-+. -++|.-| .-++++. +|.+.++-+..-.|..+
T Consensus 61 ~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~i-------------L~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 61 SIACY---SNHFLTGSEQNTVLRYKFPSGEEDTI-------------LARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLL 123 (933)
T ss_pred EEeec---ccceEEeeccceEEEeeCCCCCccce-------------eeeeeccceEEEEec-CCcEEEeecCceeEEEE
Confidence 45554 236677777788777653 2222222 2467777 5567875 67777888878889888
Q ss_pred eCCCCEEEEEe-ecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 347 DMGRRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 347 d~~~g~I~Tia-G~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
+..+....+.. |. .+ .-.+|.++|+|++..+-..|+.|++|+.+
T Consensus 124 ~~~D~s~~~~lrgh-----------------~a------------------pVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 124 NLDDSSQEKVLRGH-----------------DA------------------PVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eccccchheeeccc-----------------CC------------------ceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 87655433332 11 01 13578899999999999999999999999
Q ss_pred CCcEEEEE
Q 004302 426 SGEIKEAV 433 (762)
Q Consensus 426 ~g~I~ti~ 433 (762)
++.+....
T Consensus 169 ~~~~~~tl 176 (933)
T KOG1274|consen 169 DGILSKTL 176 (933)
T ss_pred cchhhhhc
Confidence 88765443
No 334
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=69.84 E-value=43 Score=38.07 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=82.0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeC
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADM 348 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~ 348 (762)
|+-.|...++..+-.+.+.|.+++. +|+.+..+.- + ..-..+.++. +|.++++-....+||++|+
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h-p------------d~i~S~sfn~-dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH-P------------DMVYSMSFNR-DGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred EeecccchhhHhhccCCceEEEEeccCCceeeecCC-C------------CeEEEEEecc-CCceeeeecccceeEEEcC
Confidence 3344555566666667777887776 5554443320 0 1125677775 7889999999999999999
Q ss_pred CCCEEEEEeecCCCCCCC-Cchh--hhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEE-EEEC
Q 004302 349 GRRVLETVYPTSGISKKN-NSLW--AWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLW-IMDL 424 (762)
Q Consensus 349 ~~g~I~TiaG~G~~~~~G-~~~~--~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~-v~d~ 424 (762)
..+.+-.-. .+-.+.+. ..+| +-.+...|+.+ ..-.+..|..|..+.. + +.++=-|++|+.+. .||.
T Consensus 203 r~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr------~seRq~aLwdp~nl~e-P-~~~~elDtSnGvl~PFyD~ 273 (472)
T KOG0303|consen 203 RRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSR------MSERQIALWDPNNLEE-P-IALQELDTSNGVLLPFYDP 273 (472)
T ss_pred CCCcEeeec-ccccCCCcceeEEeccCceeeecccc------ccccceeccCcccccC-c-ceeEEeccCCceEEeeecC
Confidence 888776553 22111111 0000 00001112211 1123344555655543 1 56666788888776 6788
Q ss_pred CCCcEEEEEcCCce
Q 004302 425 ASGEIKEAVKGFSK 438 (762)
Q Consensus 425 ~~g~I~ti~~G~g~ 438 (762)
+++.|.-+..|++.
T Consensus 274 dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSS 287 (472)
T ss_pred CCCEEEEEecCCcc
Confidence 77777655556553
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=69.32 E-value=2.3e+02 Score=33.06 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred EEEccCCCEEEEEeCCC-----------------cEEEEEcC-CCcEEEEecCC--CCCC-CCcccccccCCcceEEEec
Q 004302 270 ISADESGNRLFLSDSNH-----------------HRIIVFDG-NGKILDCIGSC--PGFE-DGEFESSKLMRPAASFYHK 328 (762)
Q Consensus 270 IAVD~s~g~LYVADs~n-----------------hrI~v~d~-~G~i~~~iGsG--~G~~-DG~~~~a~fn~P~GIavd~ 328 (762)
.++|+.++.+||.-.+. ++|.-+|. +|+.+=.+-.. ..+. ++.....-...+ .++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~---~~~g 298 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK---PKDG 298 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc---ccCC
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc
Q 004302 329 DDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN 408 (762)
Q Consensus 329 ~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~ 408 (762)
....+.++=+.++++..+|+.+|.+.=-...+ -.+++.++ +.
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------------------------------------~~~~~~~~-~~ 340 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------------------------------------EQPMAYDP-GL 340 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------------ccccccCC-ce
Q ss_pred EEEE-----------------ECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCccc
Q 004302 409 LLII-----------------NRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS 471 (762)
Q Consensus 409 LYVA-----------------D~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~ 471 (762)
+|+. -..+.+|..+|..+|++. |...
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~------------------------------W~~~------- 383 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV------------------------------WEKR------- 383 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe------------------------------eEee-------
Q ss_pred ccCCC---------CcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEE-EEeeccccccCCCcee
Q 004302 472 LKELP---------YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPYWF 528 (762)
Q Consensus 472 ~~~~p---------~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~s-ti~~s~~G~lG~p~~~ 528 (762)
.+ ....+..+...++.||+.+ .+.+|..+|.++|.+. +..+ +.++.+.|.-+
T Consensus 384 ---~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~ 445 (488)
T cd00216 384 ---EGTIRDSWNIGFPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGKELWKFRT-PSGIQATPMTY 445 (488)
T ss_pred ---CCccccccccCCcccCcceEecCCeEEEEC-CCCeEEEEECCCCceeeEEEC-CCCceEcCEEE
No 336
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=69.28 E-value=8.1 Score=37.02 Aligned_cols=50 Identities=6% Similarity=-0.060 Sum_probs=39.6
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHC--CC-eEEEEEEcCC
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSF--PQ-LQVIGFLHGC 156 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y--~~-v~VvgV~~~~ 156 (762)
.+.+-+-.++++|+-|+..-||+| .+..+.+.++-++| ++ +.++-.+++-
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C-------~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHC-------AKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHH-------HHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCeecCCCCCeEEEEEECCCCHhH-------HHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 445556678999999999999865 99999999999999 55 8888888764
No 337
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=68.93 E-value=1.5e+02 Score=34.00 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=85.3
Q ss_pred hhhccCCCCcccccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEE
Q 004302 247 AEVLKEPHACSSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASF 325 (762)
Q Consensus 247 ~~~~~~~~~~~~~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIa 325 (762)
..-.|+++|.+ .--.|++. ...++++.....|+.+|. .+..+..+..| | .=..+.
T Consensus 293 ~~C~kt~l~~S--------~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-----g--------~vtSl~ 348 (459)
T KOG0288|consen 293 AYCSKTVLPGS--------QCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG-----G--------RVTSLD 348 (459)
T ss_pred hheeccccccc--------cccceEec---ceeeeecccccceEEEeccCCceeeEeecC-----c--------ceeeEe
Confidence 45556665544 34556664 678999999999999994 66666655432 1 122344
Q ss_pred EecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC
Q 004302 326 YHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE 405 (762)
Q Consensus 326 vd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~ 405 (762)
++.++..|..+ +..+.+-.||..+..|...+-.-+ .+.++ .-.-+.++|
T Consensus 349 ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g-~k~as-----------------------------DwtrvvfSp 397 (459)
T KOG0288|consen 349 LSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEG-FKCAS-----------------------------DWTRVVFSP 397 (459)
T ss_pred eccCCeEEeee-cCCCceeeeecccccEEEEeeccc-ccccc-----------------------------ccceeEECC
Confidence 44445555555 556678888877665554433210 11111 133577888
Q ss_pred CCcEEEEECCCCEEEEEECCCCcEEEEEcC
Q 004302 406 DDNLLIINRSFETLWIMDLASGEIKEAVKG 435 (762)
Q Consensus 406 dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G 435 (762)
+|...-|-..+++|++|+..+|++..+..+
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 888777888999999999999988766443
No 338
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=68.78 E-value=11 Score=31.77 Aligned_cols=53 Identities=4% Similarity=0.036 Sum_probs=30.4
Q ss_pred EEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC-CcceeeCC
Q 004302 113 LAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI-TFPILLSN 184 (762)
Q Consensus 113 LnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i-tfPVl~D~ 184 (762)
.-|...||+.| .+....|++. ++.+--++++. +. ...+.+++.|. +.|++..+
T Consensus 2 ~ly~~~~Cp~C-------~~ak~~L~~~-----~i~~~~~di~~------~~-~~~~~~~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 2 TVYSKNNCVQC-------KMTKKALEEH-----GIAFEEINIDE------QP-EAIDYVKAQGFRQVPVIVAD 55 (72)
T ss_pred EEEeCCCCHHH-------HHHHHHHHHC-----CCceEEEECCC------CH-HHHHHHHHcCCcccCEEEEC
Confidence 34677899755 8887777754 44444455554 23 33444444554 56766553
No 339
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=68.69 E-value=16 Score=38.58 Aligned_cols=106 Identities=8% Similarity=-0.033 Sum_probs=58.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCC-cc-----------CcCCH-HHHHHHHHh
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCS-TI-----------SAVDQ-TRLVEMLMK 173 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~-~~-----------~e~~~-~~v~~f~~k 173 (762)
.||.+|+.|--..||.| ++..+.|+++.+ .+++|.-+..+-. .. ...++ ..+.+++..
T Consensus 106 ~~k~~I~vFtDp~CpyC-------kkl~~~l~~~~~--~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~ 176 (232)
T PRK10877 106 QEKHVITVFTDITCGYC-------HKLHEQMKDYNA--LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKG 176 (232)
T ss_pred CCCEEEEEEECCCChHH-------HHHHHHHHHHhc--CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 58999999999999865 888888888754 2455443333310 00 01122 222333333
Q ss_pred cCCCcce---eeCCCCccccccC---ceEEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 174 EYITFPI---LLSNKNFPQMENG---ACYLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 174 ~~itfPV---l~D~~~~~~~~yg---v~t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
..++-.. .++....+..++| .|++++ ++|+++ .|..+.++|++.|++.
T Consensus 177 ~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~-~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 177 KDVSPASCDVDIADHYALGVQFGVQGTPAIVL-SNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCCCcccccchHHHhHHHHHHcCCccccEEEE-cCCeEe---eCCCCHHHHHHHHHHc
Confidence 3332111 0111122233444 457775 367764 8999999999888753
No 340
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=67.99 E-value=50 Score=38.58 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=53.7
Q ss_pred Cc-ceEEEecCCCeEEEEeCCCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCC
Q 004302 320 RP-AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 397 (762)
Q Consensus 320 ~P-~GIavd~~~g~LYVADt~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~ 397 (762)
.| .||+++|.+..|+|+=....+|..||..... ..+++ ...
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-------------------------------------y~~ 251 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-------------------------------------YSH 251 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceee-------------------------------------ecC
Confidence 35 8999999999999998888999999864321 11111 112
Q ss_pred c-ceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 398 P-WHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 398 P-~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
| ..|++.++|.+++|-..+++|..||+..
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEeccc
Confidence 3 3588888999999999999999999865
No 341
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=67.42 E-value=17 Score=36.85 Aligned_cols=27 Identities=15% Similarity=-0.096 Sum_probs=22.6
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHH
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKS 139 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~ 139 (762)
-.|++.++-|--.+|+.| ++..+.+.+
T Consensus 75 ~~~~~~i~~f~D~~Cp~C-------~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYC-------RKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCCCccH-------HHHHHHHhh
Confidence 348999999999999755 888888877
No 342
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.86 E-value=67 Score=36.43 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=77.3
Q ss_pred cCcccCCc---ceEEEcc-CCCEEEEEeCCCcEEEEEcCCC--cEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCe
Q 004302 260 RNLLLHFP---GCISADE-SGNRLFLSDSNHHRIIVFDGNG--KILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDC 332 (762)
Q Consensus 260 ~~~~L~~P---~gIAVD~-s~g~LYVADs~nhrI~v~d~~G--~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~ 332 (762)
....|+-| .++-+-+ +..+-|++=+.-|+++++|... +.+..|-.. .+| +.++..|++..
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-------------E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-------------ENPISSTGLTPSGNF 261 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-------------cCcceeeeecCCCcE
Confidence 45667766 4555542 2278899999999999999843 344444221 223 56777888899
Q ss_pred EEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE
Q 004302 333 LYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII 412 (762)
Q Consensus 333 LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA 412 (762)
||++|+.. .+-.||..++.+. |.+ .. |.. -++++|.+.+.+. |+|
T Consensus 262 Iy~gn~~g-~l~~FD~r~~kl~---g~~---~k------------g~t---------------Gsirsih~hp~~~-~la 306 (412)
T KOG3881|consen 262 IYTGNTKG-QLAKFDLRGGKLL---GCG---LK------------GIT---------------GSIRSIHCHPTHP-VLA 306 (412)
T ss_pred EEEecccc-hhheecccCceee---ccc---cC------------Ccc---------------CCcceEEEcCCCc-eEE
Confidence 99999743 5889998777542 221 11 111 1588899876544 566
Q ss_pred ECCCCE-EEEEECCCC
Q 004302 413 NRSFET-LWIMDLASG 427 (762)
Q Consensus 413 D~gN~r-I~v~d~~~g 427 (762)
-.|=.| +|++|.++.
T Consensus 307 s~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTR 322 (412)
T ss_pred eeccceeEEEeecccc
Confidence 666555 788888873
No 343
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=66.18 E-value=56 Score=37.42 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=81.2
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+|+..+ +|.|..+-....-=+++|. +|.-+.++-+ ....-.+|+++| +|....+-+..+.++++
T Consensus 307 ~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~g------------H~k~I~~V~fsP-NGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 307 FSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAG------------HIKEILSVAFSP-NGYHLATGSSDNTCKVW 372 (459)
T ss_pred ceeEecC-CCceeeccCccchhheeecccCcEEEEecc------------cccceeeEeECC-CceEEeecCCCCcEEEe
Confidence 3456664 5666666555555566676 6765555421 223357899998 89999999999999999
Q ss_pred eCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcC-CCcEEEEECCCCEEEEEEC
Q 004302 347 DMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~-dG~LYVAD~gN~rI~v~d~ 424 (762)
|+... .+.|+.+.. +--..|.+++ .|.++++-.+.+++.+|..
T Consensus 373 DLR~r~~ly~ipAH~-----------------------------------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 373 DLRMRSELYTIPAHS-----------------------------------NLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred eecccccceeccccc-----------------------------------chhhheEecccCCeEEEEcccCcceeeecC
Confidence 98643 456664331 1134577776 5999999999999999998
Q ss_pred CCCcEEEEEcCC
Q 004302 425 ASGEIKEAVKGF 436 (762)
Q Consensus 425 ~~g~I~ti~~G~ 436 (762)
.++......+|.
T Consensus 418 ~~~~~~ksLaGH 429 (459)
T KOG0272|consen 418 RTWSPLKSLAGH 429 (459)
T ss_pred CCcccchhhcCC
Confidence 887644434443
No 344
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.91 E-value=61 Score=38.96 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=77.7
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRk 345 (762)
|=.+||+-.+++.++++-.-.++|+++|.+--..+.+++...-........--..=..+|.++ .+.++|+-.-+..||.
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRL 197 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEE
Confidence 446677745788999999999999999985322222222100000000000111235677775 6789999988999999
Q ss_pred EeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 346 ADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 346 id~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
+|+.++ .+..+-|.- .+-+.|.++.||+=.++-.....|+.||+
T Consensus 198 wDprt~~kimkLrGHT-----------------------------------dNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHT-----------------------------------DNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred eccccccceeeeeccc-----------------------------------cceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 998764 444443321 02446777778887777778888888887
Q ss_pred CC
Q 004302 425 AS 426 (762)
Q Consensus 425 ~~ 426 (762)
.-
T Consensus 243 gq 244 (735)
T KOG0308|consen 243 GQ 244 (735)
T ss_pred cc
Confidence 53
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=65.72 E-value=2.3e+02 Score=32.49 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=37.8
Q ss_pred EEEEEeC-CCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEE-EEeCCCCeEEEEeCCCCEEEE
Q 004302 278 RLFLSDS-NHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLY-IVDSENHAIRRADMGRRVLET 355 (762)
Q Consensus 278 ~LYVADs-~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LY-VADt~NhrIRkid~~~g~I~T 355 (762)
-||.+|. ++..++.+|.+..-++.+--|+|. + ..|.++.+++..|| |-+ +++|+++|+.+...+.
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~----------~-~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGD----------N-TFGGFLSPDDRALYYVKN--GRSLRRVDLDTLEERV 116 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B------------TTT-EE-TTSSEEEEEET--TTEEEEEETTT--EEE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCC----------C-ccceEEecCCCeEEEEEC--CCeEEEEECCcCcEEE
Confidence 4567884 677789999965555554333221 1 22566667777764 543 3689999999988877
Q ss_pred Eeec
Q 004302 356 VYPT 359 (762)
Q Consensus 356 iaG~ 359 (762)
++-.
T Consensus 117 vy~~ 120 (386)
T PF14583_consen 117 VYEV 120 (386)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 7644
No 346
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=65.41 E-value=23 Score=40.23 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=86.8
Q ss_pred chhhhhhhhccCCCCcccccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccC
Q 004302 241 CTWAKQAEVLKEPHACSSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLM 319 (762)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn 319 (762)
.-|+-.++..|.- +.+.=..=.++|++| ++..|++-+..++|++.|. ..+-..++ +|.|+
T Consensus 163 KyWqpnmnnVk~~------~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgw----------- 223 (464)
T KOG0284|consen 163 KYWQPNMNNVKII------QAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGW----------- 223 (464)
T ss_pred EecccchhhhHHh------hHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhhee-ccCCC-----------
Confidence 4666666666642 233334456889997 8999999999999999997 45444444 33443
Q ss_pred CcceEEEecCCCeEEEEeCCCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCc
Q 004302 320 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 398 (762)
Q Consensus 320 ~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P 398 (762)
.+..+..+|..+.|.++-.+| -|..+|+.++. +.|+.+. =+.-
T Consensus 224 dVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~H-----------------------------------KntV 267 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGH-----------------------------------KNTV 267 (464)
T ss_pred CcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhc-----------------------------------cceE
Confidence 378899998666555555444 89999987653 3333322 0123
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 399 WHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 399 ~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
.++.+.++++.+.+=...+.+++||..
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehh
Confidence 466777777777777777888888876
No 347
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=65.20 E-value=79 Score=39.04 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=26.1
Q ss_pred cceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 398 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 398 P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
-.++++++||.-.|+-.....|+.||.-++..
T Consensus 579 itd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 579 ITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred eeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 34688999998777777789999999887754
No 348
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.79 E-value=66 Score=37.32 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=71.2
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE-EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcc
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE-TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 399 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~-TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~ 399 (762)
-.++.+-. +|.|+-|--..+.|++||.+++.|- ++.+ =..|.
T Consensus 71 v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a------------------------------------h~apv 113 (487)
T KOG0310|consen 71 VYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYA------------------------------------HQAPV 113 (487)
T ss_pred eeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhh------------------------------------ccCce
Confidence 35566764 6888888778888999996553221 1111 11354
Q ss_pred eEEE-cC-CCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCC
Q 004302 400 HLMK-SE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 477 (762)
Q Consensus 400 gIav-d~-dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~ 477 (762)
.... .+ ++.++++-.....++.||.++..++.-..|.- |+..
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht----------------------DYVR-------------- 157 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT----------------------DYVR-------------- 157 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc----------------------ceeE--------------
Confidence 4443 22 57788877777788889988877531111111 1111
Q ss_pred cceeeeEEecCCEEEEEECCCCEEEEEECCCCc
Q 004302 478 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGV 510 (762)
Q Consensus 478 ~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~ 510 (762)
-.++.+.+++|+|+-.|.|.||.+|.-+..
T Consensus 158 ---~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 158 ---CGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred ---eeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 123345567899999999999999987653
No 349
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.51 E-value=1.2e+02 Score=32.54 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=63.1
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE 354 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~ 354 (762)
++.-|-+-.+...|+++|- +|++.+-+++- +|.....+||.- -.+.++-+....||.+|-.++..+
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNee---------sSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEE---------SSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccc----cceeeEEEecCc---------ceEEEeccccceeEEEEcccCCCC
Confidence 4445566667778888887 78888877652 122223344443 344445556678888887655443
Q ss_pred EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 355 TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 355 TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
.+.- +..+ ...-..|-+ .++..|+-+-.+++|.||..-|..
T Consensus 137 PiQi------------------ldea--------------~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 137 PIQI------------------LDEA--------------KDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred ccch------------------hhhh--------------cCceeEEEe--cccEEEeeccCCcEEEEEeeccee
Confidence 3310 0000 112233433 588899999899999999866543
No 350
>PHA02790 Kelch-like protein; Provisional
Probab=63.49 E-value=2.9e+02 Score=32.16 Aligned_cols=66 Identities=6% Similarity=-0.016 Sum_probs=38.9
Q ss_pred CCeEEEEeCC---CCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC
Q 004302 330 DDCLYIVDSE---NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED 406 (762)
Q Consensus 330 ~g~LYVADt~---NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d 406 (762)
++.|||.-.. .+.+.++|+.++..+.++... ...... ++++ -+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~--------------------------------~~r~~~-~~~~-~~ 407 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY--------------------------------YPHYKS-CALV-FG 407 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC--------------------------------Cccccc-eEEE-EC
Confidence 6899998542 245777888777766653221 001122 2333 36
Q ss_pred CcEEEEECCCCEEEEEECCCCcEEEE
Q 004302 407 DNLLIINRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~~g~I~ti 432 (762)
|.|||.- +.+-+||++++..+.+
T Consensus 408 ~~IYv~G---G~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 408 RRLFLVG---RNAEFYCESSNTWTLI 430 (480)
T ss_pred CEEEEEC---CceEEecCCCCcEeEc
Confidence 8999975 2356788877776543
No 351
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.11 E-value=1e+02 Score=33.06 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=37.2
Q ss_pred CeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
..||-+++..| .|.|..|.|. .-.++++..|+.=+.+--+...|
T Consensus 39 rtvrLWNp~rg~liktYsghG~-----------------------------------EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGH-----------------------------------EVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred ceEEeecccccceeeeecCCCc-----------------------------------eeeeccccccccccccCCCCceE
Confidence 46777887654 6788887761 01123333344444455555667
Q ss_pred EEEECCCCcEEEEEcCCc
Q 004302 420 WIMDLASGEIKEAVKGFS 437 (762)
Q Consensus 420 ~v~d~~~g~I~ti~~G~g 437 (762)
++||.++|++.+-+.|..
T Consensus 84 ~vwDV~TGkv~Rr~rgH~ 101 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHL 101 (307)
T ss_pred EEEEcccCeeeeeccccc
Confidence 888888887665555554
No 352
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.00 E-value=40 Score=33.88 Aligned_cols=98 Identities=7% Similarity=0.033 Sum_probs=60.5
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcc-hhhcHHHHHHHHHCCC-eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGT-VVTFEKVKSIQQSFPQ-LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~-~~emP~L~~L~~~y~~-v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
.-.||+++|-|=..-|+.| .. .+++-.-+++|+-... +.++-++..+ .-|++.
T Consensus 39 ~~~~Kylllmfes~~C~yC-----~~~KKd~~~~krlrEylk~hf~~~~l~i~~--------------------skpv~f 93 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYC-----ERFKKDLKNVKRLREYLKEHFSAYYLNISY--------------------SKPVLF 93 (182)
T ss_pred CccCcEEEEEEcCCCChHH-----HHHHHhhcchHHHHHHHhhCeEEEEEEecc--------------------CcceEe
Confidence 4579999999999999755 21 2233333445544444 5555554433 114333
Q ss_pred CCCC--------ccccccCce----EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHH
Q 004302 183 SNKN--------FPQMENGAC----YLLSKDFGNARVFHENSLDIGMLNKAVEELIM 227 (762)
Q Consensus 183 D~~~--------~~~~~ygv~----t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~ 227 (762)
-.+. .+...|+|+ .+++|++|+.+....|+++.+.....++-.-+
T Consensus 94 ~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 94 KVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred ecCceeeeecHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 2221 122335554 48999999999999999999998766654333
No 353
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=62.81 E-value=15 Score=36.43 Aligned_cols=116 Identities=11% Similarity=0.085 Sum_probs=71.9
Q ss_pred CccccCCCCCCEEEEEEeccCCCCccCCCCcchhhc--HHHHHHHH-HCCC--eE-EEEEEcCCCccCcCCHHHHHHHHH
Q 004302 99 DNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTF--EKVKSIQQ-SFPQ--LQ-VIGFLHGCSTISAVDQTRLVEMLM 172 (762)
Q Consensus 99 ~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~em--P~L~~L~~-~y~~--v~-VvgV~~~~~~~~e~~~~~v~~f~~ 172 (762)
+++..+++-||+-||+--|---. .+|| |-++.+.. +||. .+ ---|+.|+... . +-.-++.-++
T Consensus 50 ~~W~SAqL~GKvRV~~hiAGRts---------aKE~Na~lieaIk~a~fp~~~YQTTTIiN~DDAi~-G-tgmFVkssae 118 (184)
T COG3054 50 KTWNSAQLVGKVRVLQHIAGRTS---------AKEKNATLIEAIKSAKFPHDRYQTTTIINTDDAIP-G-TGMFVKSSAE 118 (184)
T ss_pred cccchhhccchhhhhhhhhcccc---------hhhhchHHHHHHHhccCChHHceeeEEeccCCccc-c-ccceeecchh
Confidence 46778899999999986554432 3443 34444433 3332 11 12244554110 0 1112333344
Q ss_pred hcCCCcc---eeeCCCCccccccCce-----EEEEcCCCCEEEEecCCcCHHHHHHHHHHH
Q 004302 173 KEYITFP---ILLSNKNFPQMENGAC-----YLLSKDFGNARVFHENSLDIGMLNKAVEEL 225 (762)
Q Consensus 173 k~~itfP---Vl~D~~~~~~~~ygv~-----t~lId~~G~iv~~~~G~~~~~~L~~~l~~l 225 (762)
+..=.|| +++|+.+....++++. -+++|++|++.+.+.|.++.+++.+.|.-+
T Consensus 119 ~~Kke~pwSq~vlD~~gvak~AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll 179 (184)
T COG3054 119 SNKKEYPWSQFVLDSNGVAKNAWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLL 179 (184)
T ss_pred hccccCCceeeEEccchhhhhhhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHHHH
Confidence 4444454 8899988666677765 499999999999999999998888776644
No 354
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=62.51 E-value=3.1e+02 Score=32.09 Aligned_cols=127 Identities=14% Similarity=0.139 Sum_probs=63.4
Q ss_pred CcEEEEEcCCCcEEEEecCC--C-CCCC------------CcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCC
Q 004302 286 HHRIIVFDGNGKILDCIGSC--P-GFED------------GEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGR 350 (762)
Q Consensus 286 nhrI~v~d~~G~i~~~iGsG--~-G~~D------------G~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~ 350 (762)
...|+.+|.+|+++..+-.. . -..+ +.....--.+--+|.+++.++.|+|+-...+.|.+||..+
T Consensus 223 ~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 223 EDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred cCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 56799999999999876431 0 0011 1111122234567889987899999999899999999888
Q ss_pred CEEEEEeecCCCCCCCCchhhhhhhc---cCccccCCCccCCCCCCCCCCcceEEEcCCC---cEEEEECCCCE
Q 004302 351 RVLETVYPTSGISKKNNSLWAWIMEK---LGFERDNDTKSEKLDPQSLIFPWHLMKSEDD---NLLIINRSFET 418 (762)
Q Consensus 351 g~I~TiaG~G~~~~~G~~~~~~~~~~---~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG---~LYVAD~gN~r 418 (762)
+.|.=+.|..+ +..+. ..+..... .|-.... .......+...+.+.+.++| +|+|=|-++.|
T Consensus 303 ~~i~Wilg~~~-~w~~~-~~~~ll~~vd~~G~~~~~----~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 303 GKIKWILGPPG-GWNGT-YQDYLLTPVDSNGNPIDC----GDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp S-EEEEES-ST-T--TT-TGGGB-EEB-TTS-B-EB----SSSS----SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred CcEEEEeCCCC-CCCcc-cchheeeeeccCCceeec----cCCCCcccccccceEEcCCCCeEEEEEEECCCCC
Confidence 88887776642 22111 01111111 0110000 01122335577888888899 99998866554
No 355
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=62.05 E-value=1.5e+02 Score=34.96 Aligned_cols=119 Identities=22% Similarity=0.196 Sum_probs=72.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCC--cEEEEecC-CCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDGNG--KILDCIGS-CPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~~G--~i~~~iGs-G~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+..|.+.+.|++-+....+++++.+. +-+-+|-. ..| | .=..|+..++++ ++.++-|--.++.|+.+
T Consensus 274 g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~---g-----~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 274 GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG---G-----KRVPVTSCAWNR-DGKLIAAGCLDGSIQIW 344 (641)
T ss_pred cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC---C-----cccCceeeecCC-CcchhhhcccCCceeee
Confidence 344555666777666666666665532 22222222 111 1 123477888887 56777777788999999
Q ss_pred eCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 347 DMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 347 d~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
+..+.++.+..=...- ...| ..-+.|+++.+|+.+.+-...+.+++||+..
T Consensus 345 ~~~~~~v~p~~~vk~A------------H~~g-----------------~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDA------------HLPG-----------------QDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ecCCcccccceEeeec------------cCCC-----------------CceeEEEeccccchhhhccCCCceeeeeccc
Confidence 9755555444322100 0000 1346799999999998888888999999865
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.55 E-value=3.4e+02 Score=32.24 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=17.8
Q ss_pred CCcEEEEECCCCEEEEEECCCCcE
Q 004302 406 DDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 406 dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
.|.||++-..++.++.+|.++|++
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCE
Confidence 344555556688999999999974
No 357
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=61.37 E-value=92 Score=29.38 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEEEcCCCCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 196 YLLSKDFGNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 196 t~lId~~G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
.+||+++|.+..+.....++++|-..|+.+-+..
T Consensus 82 ~vLiGKDG~vK~r~~~p~~~~~lf~~ID~MPmRq 115 (118)
T PF13778_consen 82 VVLIGKDGGVKLRWPEPIDPEELFDTIDAMPMRQ 115 (118)
T ss_pred EEEEeCCCcEEEecCCCCCHHHHHHHHhCCccch
Confidence 5999999999999999999999999998765544
No 358
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=61.28 E-value=55 Score=35.55 Aligned_cols=134 Identities=9% Similarity=0.007 Sum_probs=78.0
Q ss_pred cCCCcccCcccchhhHhhcCCCCCCCceeecccCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchh--hcHHHHHHH
Q 004302 64 ASPAESLSQSDTLSFIESTFNEFQGPHHLWFNIVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVV--TFEKVKSIQ 141 (762)
Q Consensus 64 ~~~a~~~~~~~~~~~i~stl~~l~g~~~~w~n~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~--emP~L~~L~ 141 (762)
..+|.+.|+..+...++. -|-|...|.+|.++-.+.-.|+.+.--| |. ++ .-..|++|+
T Consensus 64 ~~~alAL~e~eV~ekL~~------VPVFtItn~~G~pvl~s~~~~~~~~gvf----~s---------~qedA~afL~~lk 124 (270)
T TIGR00995 64 TLQALTLPPEEVAKILAG------TSVFTVSNAQNEFVLASDNDGEKSIGLL----CF---------RQEDAEAFLAQLR 124 (270)
T ss_pred ccccccCCHHHHHHHhcC------CceEEEEcCCCCeEEEECCCCCceEEEE----EC---------CHHHHHHHHHHHH
Confidence 344445666554443332 5668888888888777655554333333 32 34 355788888
Q ss_pred HHCCC----eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCC-----ccc---c--ccCceE-----EEEcCC
Q 004302 142 QSFPQ----LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKN-----FPQ---M--ENGACY-----LLSKDF 202 (762)
Q Consensus 142 ~~y~~----v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~-----~~~---~--~ygv~t-----~lId~~ 202 (762)
++.++ ++|+.|+.+. +-++ ++.++.|-++-|+.. .+. . ..|||- +.|.++
T Consensus 125 ~~~p~l~~~~kV~pvsL~~----------vYkl-~~e~l~F~fiP~~~qV~~A~~ll~~~~~~~~GVPlF~~~~Lti~~~ 193 (270)
T TIGR00995 125 KRKPEVGSQAKVVPITLDQ----------VYKL-KVEGIGFRFLPDPAQIKNALELPAANSEYFDGVPVFQSGLLVVQKK 193 (270)
T ss_pred hhCccccCCceEEEEEHHH----------HHHH-hhcCccEEEeCCHHHHHHHHHHHhcCccCCCCccEEeecceEEEeC
Confidence 77764 8999997664 3333 445577777766541 111 1 137882 444444
Q ss_pred CCEEEEecCCcCHHHHHHHHHHHHHhh
Q 004302 203 GNARVFHENSLDIGMLNKAVEELIMQQ 229 (762)
Q Consensus 203 G~iv~~~~G~~~~~~L~~~l~~ll~~~ 229 (762)
++-+ ..=..+.++|+..|+++-++.
T Consensus 194 n~~~--iP~FF~Kedlq~~L~~~kkq~ 218 (270)
T TIGR00995 194 NERY--CPVYFSKEDIEQELSKFKRES 218 (270)
T ss_pred CeEE--EeeEeeHHHHHHHHHHHhHhC
Confidence 4322 222456788888888766653
No 359
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=61.12 E-value=1.3e+02 Score=32.51 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=49.8
Q ss_pred CCcceE---EEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCC
Q 004302 319 MRPAAS---FYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL 395 (762)
Q Consensus 319 n~P~GI---avd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L 395 (762)
..|.-| .++| +..+|||-.+...+++||..+|.=.-..- + +.+
T Consensus 222 k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~n------k---------------------------gh~ 267 (334)
T KOG0278|consen 222 KMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYN------K---------------------------GHF 267 (334)
T ss_pred cCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecc------c---------------------------CCC
Confidence 445444 4667 56899999988999999987664211110 1 112
Q ss_pred CCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 396 IFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 396 ~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.--+.|.++|+|.+|-+-+..+.|+.|-.
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEe
Confidence 23467899999999999988888877754
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=60.71 E-value=1.6e+02 Score=34.86 Aligned_cols=74 Identities=12% Similarity=-0.001 Sum_probs=45.2
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE 354 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~ 354 (762)
++.||+++..+ +|+-+|. +|+.+=.+-..... ......+.-....|+++. ++.||+++. +.+|..+|..+|.+.
T Consensus 69 ~g~vyv~s~~g-~v~AlDa~TGk~lW~~~~~~~~-~~~~~~~~~~~~rg~av~--~~~v~v~t~-dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYS-RVYALDAKTGKELWKYDPKLPD-DVIPVMCCDVVNRGVALY--DGKVFFGTL-DARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCC-cEEEEECCCCceeeEecCCCCc-ccccccccccccccceEE--CCEEEEEcC-CCEEEEEECCCCCEE
Confidence 68999998754 6999997 78877444221000 000000000123567775 688999875 567999998877653
No 361
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=60.46 E-value=17 Score=31.39 Aligned_cols=57 Identities=12% Similarity=-0.098 Sum_probs=30.7
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcC-CCcceeeCCC
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEY-ITFPILLSNK 185 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~-itfPVl~D~~ 185 (762)
.-|.-|..+||+.| .+..-.|+++ ++.+.-++++. +. ....+.+..+ -++|++..++
T Consensus 8 ~~V~ly~~~~Cp~C-------~~ak~~L~~~-----gi~y~~idi~~------~~-~~~~~~~~~g~~~vP~i~i~g 65 (79)
T TIGR02190 8 ESVVVFTKPGCPFC-------AKAKATLKEK-----GYDFEEIPLGN------DA-RGRSLRAVTGATTVPQVFIGG 65 (79)
T ss_pred CCEEEEECCCCHhH-------HHHHHHHHHc-----CCCcEEEECCC------Ch-HHHHHHHHHCCCCcCeEEECC
Confidence 33556889999855 7776666643 44444455553 11 1223333434 4567665433
No 362
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=60.15 E-value=14 Score=36.14 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=33.3
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEE
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFL 153 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~ 153 (762)
.+++.|+.|+-..|| +| ...-+.+..+.+++++ +.+.-+.
T Consensus 14 ~~~~~i~~f~D~~Cp-----~C--~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCP-----HC--YNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCc-----ch--hhhhHHHHHHHHhCCCCceEEEcC
Confidence 689999999999997 55 9999999999999986 5554444
No 363
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=59.70 E-value=25 Score=39.50 Aligned_cols=125 Identities=12% Similarity=0.152 Sum_probs=87.4
Q ss_pred ccCcccCCc--ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 259 VRNLLLHFP--GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 259 ~~~~~L~~P--~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
.+...+-+| ..|-.+|....|..+-.....|..+|. .++.+..+-. =.++.+|+.+| +...||
T Consensus 180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-------------~mRTN~IswnP-eafnF~ 245 (433)
T KOG0268|consen 180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-------------TMRTNTICWNP-EAFNFV 245 (433)
T ss_pred cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-------------eccccceecCc-ccccee
Confidence 444556666 566667777777777767888999987 6666654422 14578899999 889999
Q ss_pred EeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECC
Q 004302 336 VDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS 415 (762)
Q Consensus 336 ADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~g 415 (762)
+-.+.|.+..+|+. .+.+-.+.- .|- .+.-.+|.++|.|.=+|+-++
T Consensus 246 ~a~ED~nlY~~DmR--~l~~p~~v~----------------~dh---------------vsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 246 AANEDHNLYTYDMR--NLSRPLNVH----------------KDH---------------VSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred eccccccceehhhh--hhcccchhh----------------ccc---------------ceeEEEeccCCCcchhccccc
Confidence 99999999999963 333322221 010 123457888888999999999
Q ss_pred CCEEEEEECCCCcEE
Q 004302 416 FETLWIMDLASGEIK 430 (762)
Q Consensus 416 N~rI~v~d~~~g~I~ 430 (762)
...|++|....+.-+
T Consensus 293 DksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSR 307 (433)
T ss_pred cceEEEeecCCCcch
Confidence 999999987765533
No 364
>PRK10329 glutaredoxin-like protein; Provisional
Probab=59.38 E-value=24 Score=30.91 Aligned_cols=33 Identities=9% Similarity=-0.150 Sum_probs=19.7
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGC 156 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~ 156 (762)
|.-|-.+||++| .+..-.|++. ++.+--++++.
T Consensus 3 v~lYt~~~Cp~C-------~~ak~~L~~~-----gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTRNDCVQC-------HATKRAMESR-----GFDFEMINVDR 35 (81)
T ss_pred EEEEeCCCCHhH-------HHHHHHHHHC-----CCceEEEECCC
Confidence 445778999765 6666666543 44444445543
No 365
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=15 Score=41.38 Aligned_cols=39 Identities=3% Similarity=-0.219 Sum_probs=30.7
Q ss_pred CCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC---eEEEEEE
Q 004302 108 GAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ---LQVIGFL 153 (762)
Q Consensus 108 GK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~---v~VvgV~ 153 (762)
-+..++.|+|.||+.| ...+|.+.++.+.+.. +.+..+.
T Consensus 162 ~~~~lv~f~aPwc~~c-------k~l~~~~~~~a~~~~~~~~v~~~~~d 203 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHC-------KKLAPEWEKLAKLLKSKENVELGKID 203 (383)
T ss_pred CcceEEEEeccccHHh-------hhcChHHHHHHHHhccCcceEEEeec
Confidence 4578899999999855 7778999999998862 6666654
No 366
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=59.00 E-value=27 Score=29.39 Aligned_cols=51 Identities=10% Similarity=-0.044 Sum_probs=27.9
Q ss_pred EEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcC-CCcceee
Q 004302 114 AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEY-ITFPILL 182 (762)
Q Consensus 114 nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~-itfPVl~ 182 (762)
-|-.+||+.| ++..-.|++. ++.+.-+++.. +.+...++.+..+ .++|++.
T Consensus 5 ly~~~~C~~C-------~ka~~~L~~~-----gi~~~~~di~~------~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 5 IYSRLGCEDC-------TAVRLFLREK-----GLPYVEINIDI------FPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEecCCChhH-------HHHHHHHHHC-----CCceEEEECCC------CHHHHHHHHHHhCCCCcCEEE
Confidence 3456899755 8887777764 44444555554 3333344444433 2445444
No 367
>PHA03098 kelch-like protein; Provisional
Probab=58.90 E-value=3.5e+02 Score=31.58 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=19.2
Q ss_pred CCeEEEEeCC--C----CeEEEEeCCCCEEEEE
Q 004302 330 DDCLYIVDSE--N----HAIRRADMGRRVLETV 356 (762)
Q Consensus 330 ~g~LYVADt~--N----hrIRkid~~~g~I~Ti 356 (762)
++.|||.-.. + +.|.++|+.++..+.+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 6899997541 1 4688888877777665
No 368
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=58.50 E-value=48 Score=38.47 Aligned_cols=107 Identities=14% Similarity=0.230 Sum_probs=73.8
Q ss_pred cCCCEEEEEeCCCcEEEEEcC--CCcEEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEEEeCCC
Q 004302 274 ESGNRLFLSDSNHHRIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRRADMGR 350 (762)
Q Consensus 274 ~s~g~LYVADs~nhrI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRkid~~~ 350 (762)
|..+.|+.+-...+.|.+++. +++.++.+- |. +.| ..++++. .+.=|.+-+....|+-+|.++
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---gH----------~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---GH----------RKPVRDASFNN-CGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecCcceehhhh---cc----------hhhhhhhhccc-cCCeeeeeecceeeeeecccc
Confidence 567889999888999998876 567666542 11 112 3344443 344444555667788889888
Q ss_pred CEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCC-cEEEEECCCCEEEEEECCCCcE
Q 004302 351 RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 351 g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG-~LYVAD~gN~rI~v~d~~~g~I 429 (762)
|.+..-.-.+ . -|..+-+.+++ +++++-..+.+|+.||..+|+|
T Consensus 290 G~~~~~f~~~------------------~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 290 GQVLSRFHLD------------------K-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred ceEEEEEecC------------------C-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 8776653222 1 26667777776 9999999999999999988764
No 369
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=58.18 E-value=2.8e+02 Score=30.20 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCC-cceEEEecCCCeEEEEeCCCCeEEEEeCCCCEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMR-PAASFYHKDDDCLYIVDSENHAIRRADMGRRVL 353 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~-P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I 353 (762)
.++-+++-+...-|+.+|. +|+.+..+ .|++ +..+-+++++..|-||+. ..|..+|..+-.+
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL--------------~~~s~VtSlEvs~dG~ilTia~g--ssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSL--------------EFNSPVTSLEVSQDGRILTIAYG--SSVKFWDAKSFGL 217 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEE--------------ecCCCCcceeeccCCCEEEEecC--ceeEEeccccccc
Confidence 4555666677888899987 78777654 4555 477888887777777775 3477777543111
Q ss_pred EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEE---EcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 354 ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM---KSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 354 ~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIa---vd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
.. .+.-|..|. +.|+..+|||--..-.+++||..+|+
T Consensus 218 lK--------------------------------------s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 218 LK--------------------------------------SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ee--------------------------------------eccCccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 00 112233332 34678999998777789999998886
No 370
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=56.89 E-value=95 Score=36.25 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=55.3
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEc-CCCcEEEEecCCCCCCCC-------------------cccccccCCcceEE
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFD-GNGKILDCIGSCPGFEDG-------------------EFESSKLMRPAASF 325 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d-~~G~i~~~iGsG~G~~DG-------------------~~~~a~fn~P~GIa 325 (762)
+--+|..++.++.|+|+-...+-|++|| .+|++.-.+|...++... ......+...+.+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~ 351 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAH 351 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEE
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceE
Confidence 3456778888899999999999999999 689999889874333321 01112334556777
Q ss_pred EecCCC---eEEEEeCCCCe----------------EE--EEeCCCCEEEEEe
Q 004302 326 YHKDDD---CLYIVDSENHA----------------IR--RADMGRRVLETVY 357 (762)
Q Consensus 326 vd~~~g---~LYVADt~Nhr----------------IR--kid~~~g~I~Tia 357 (762)
+.+ ++ +|+|-|-++.| +. +||...++++.+.
T Consensus 352 ~~~-~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw 403 (477)
T PF05935_consen 352 LIP-DGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVW 403 (477)
T ss_dssp E-T-TS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEE
T ss_pred EcC-CCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEE
Confidence 775 67 89999965533 43 4677777777664
No 371
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=56.37 E-value=49 Score=39.29 Aligned_cols=82 Identities=9% Similarity=-0.053 Sum_probs=51.1
Q ss_pred CCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCC
Q 004302 105 KRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSN 184 (762)
Q Consensus 105 d~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~ 184 (762)
.+.++.-+--|-.++|+ .| ....-.++++....+++..-.|...+ ..+.+++++
T Consensus 473 ~~~~~~~i~v~~~~~C~-----~C--p~~~~~~~~~~~~~~~i~~~~i~~~~----------~~~~~~~~~--------- 526 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCT-----LC--PDVVLAAQRIASLNPNVEAEMIDVSH----------FPDLKDEYG--------- 526 (555)
T ss_pred hcCCCeEEEEEECCCCC-----Cc--HHHHHHHHHHHHhCCCceEEEEECcc----------cHHHHHhCC---------
Confidence 34566666677899997 45 77677778888888876555554432 122233333
Q ss_pred CCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHH
Q 004302 185 KNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAV 222 (762)
Q Consensus 185 ~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l 222 (762)
-+++|+++||. +++ +.|..+.+++..+|
T Consensus 527 ------v~~vP~~~i~~--~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 527 ------IMSVPAIVVDD--QQV--YFGKKTIEEMLELI 554 (555)
T ss_pred ------ceecCEEEECC--EEE--EeeCCCHHHHHHhh
Confidence 13577888884 333 55877877776654
No 372
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=55.84 E-value=2.5e+02 Score=32.72 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=53.8
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCc
Q 004302 399 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA 478 (762)
Q Consensus 399 ~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~ 478 (762)
.+++++++|...++-.+.+.||+||.....+...+.-+|.+ +|... ++..++ .|+... +-
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v---~gts~-----~~S~ng-~ylA~G-----S~------ 407 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV---HGTSL-----CISLNG-SYLATG-----SD------ 407 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc---ceeee-----eecCCC-ceEEec-----cC------
Confidence 46777778777777777778888888777665555544422 23211 000011 111110 00
Q ss_pred ceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEEEeeccccc
Q 004302 479 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAI 521 (762)
Q Consensus 479 ~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~~G~ 521 (762)
.| -++..+++=-.+++.=..|..++--+..++.++|+-++.
T Consensus 408 -~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 408 -SG-IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred -cc-eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 00 111222233345566667777777777777778876654
No 373
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=55.57 E-value=3.1e+02 Score=29.96 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred EEeCCCcEEEEE--cCCCcEEEEecCCCCCCCCcccccccCCcceEEEecC--CCeEE--EEeCCCCeEEEEeCCCCEEE
Q 004302 281 LSDSNHHRIIVF--DGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKD--DDCLY--IVDSENHAIRRADMGRRVLE 354 (762)
Q Consensus 281 VADs~nhrI~v~--d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~--~g~LY--VADt~NhrIRkid~~~g~I~ 354 (762)
-+|..|+.|..+ |++-..+..+--+. ..-+.....|.|+++..+ .+..| |.+. .+-|+.+.+..
T Consensus 118 ASdR~~~~i~~y~Idp~~~~L~sitD~n-----~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d---- 187 (364)
T COG4247 118 ASDRQNDKIVFYKIDPNPQYLESITDSN-----APYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLID---- 187 (364)
T ss_pred cccccCCeEEEEEeCCCccceeeccCCC-----CccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEe----
Confidence 456667776654 55555555553220 112345678999988653 23444 4443 35666654311
Q ss_pred EEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCC---CcceEEEcCC-CcEEEEECCCCEEEEEECCC
Q 004302 355 TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI---FPWHLMKSED-DNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 355 TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~---~P~gIavd~d-G~LYVAD~gN~rI~v~d~~~ 426 (762)
.|.| +.+.. . -.+|. .-.|+..|.+ |.|||+.. +-.||+|..+-
T Consensus 188 --~gnG---kv~~k-------------~---------vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep 235 (364)
T COG4247 188 --QGNG---KVGTK-------------L---------VRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAEP 235 (364)
T ss_pred --cCCc---eEcce-------------e---------eEeeecCCcccceeeccccceEEEeec-cceeeecccCC
Confidence 1121 11100 0 01122 3457777755 99999984 67899998653
No 374
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.18 E-value=12 Score=39.28 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=34.9
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGC 156 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~ 156 (762)
+-+.-||.|+|.|-+.| +..-|-+.+|..+|.. +.+=-|.++.
T Consensus 143 k~t~WlIeFfa~ws~~C-------v~~spvfaeLS~kyn~~~lkFGkvDiGr 187 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKC-------VRFSPVFAELSIKYNNNLLKFGKVDIGR 187 (265)
T ss_pred CceEEEEEEEeecChhh-------cccccccHHHHHHhCCCCCcccceeecc
Confidence 56788999999999866 9999999999999975 6665555543
No 375
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=55.02 E-value=1.8e+02 Score=33.19 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=53.5
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 322 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 322 ~GIavd~~~g~LYVADt~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
..+.+.| .+.-.|+-++...+|.+|+.+.+ +.|.-|. -++-..
T Consensus 119 l~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-----------------------------------~~WVlc 162 (480)
T KOG0271|consen 119 LSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-----------------------------------KNWVLC 162 (480)
T ss_pred EEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCC-----------------------------------ccEEEE
Confidence 3466777 56666888999999999987653 2222111 235667
Q ss_pred EEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 401 LMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 401 Iavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
|+.+|||..+.+-.-++.|+.||+.+|.
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCC
Confidence 8999999999999999999999998875
No 376
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=54.33 E-value=44 Score=38.71 Aligned_cols=138 Identities=11% Similarity=0.112 Sum_probs=90.4
Q ss_pred ccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEE
Q 004302 259 VRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYI 335 (762)
Q Consensus 259 ~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYV 335 (762)
-+..-|+-|.|..+|+ +++..++|-+-|...++++ .+++.-..|.+ +|. ....|..|..+++. +++.|+|
T Consensus 162 iky~vlqvhyg~t~df-~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~tvp~~-----~~~~f~~~tsc~v~-~n~~ihv 234 (501)
T KOG3567|consen 162 IKYFVLQVHYGLTIDF-DGNYDVTGVGMHQTEKPQPKLAKTMLLLGDGTVPGE-----GTKHFETPTSCAVE-ENGPIHV 234 (501)
T ss_pred cceeEEEeccccccCC-CCCcccccceeeeeccCCchhhceEEeecCCccCCC-----CccccCCCceEEEe-cCcceee
Confidence 4556799999999997 8899999999999999988 56666555553 221 13578889999998 4899999
Q ss_pred EeCCCC-eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCC--CcEEEE
Q 004302 336 VDSENH-AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSED--DNLLII 412 (762)
Q Consensus 336 ADt~Nh-rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~d--G~LYVA 412 (762)
+|..-| +|.+.+.++-.|... ..| .| . ..|. . .|+-...-.+ ..+=|+
T Consensus 235 fa~r~hTh~Lgk~vsG~lv~q~-~~g--------~w--~--~ig~--------r--------~Pq~pqlf~~v~~~~~ia 285 (501)
T KOG3567|consen 235 FAYRCHTHILGKVVSGYLVAQK-HEG--------HW--T--LIGR--------R--------DPQLPQLFEPVNHIVCVA 285 (501)
T ss_pred EEeeeeehhhcceeeeeEeeec-cCc--------ce--e--eccc--------c--------CCCchhhhcCCCcceeee
Confidence 998655 666666554444311 111 11 1 1121 0 3443333332 467788
Q ss_pred ECCCCEEEEEECCCCcEEEE
Q 004302 413 NRSFETLWIMDLASGEIKEA 432 (762)
Q Consensus 413 D~gN~rI~v~d~~~g~I~ti 432 (762)
|..|.|++-+..+.++-.+.
T Consensus 286 dgD~~~vrC~~~s~~~~rtt 305 (501)
T KOG3567|consen 286 DGDNQRVRCFFQSLGRNRTT 305 (501)
T ss_pred cCCceEEEEEEccCCcCcee
Confidence 99999999776654443333
No 377
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=54.09 E-value=3e+02 Score=29.38 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCeEEEEeCCCCeEEEEeCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCc
Q 004302 330 DDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN 408 (762)
Q Consensus 330 ~g~LYVADt~NhrIRkid~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~ 408 (762)
++.+|++-+....||.+|+.-. -|.|+ ++ +..++ |+. -..-..|+|||.|.
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l-~~---~~~~~----------gle--------------ssavaav~vdpsgr 244 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTL-DN---DFHDG----------GLE--------------SSAVAAVAVDPSGR 244 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeec-cC---cccCC----------Ccc--------------cceeEEEEECCCcc
Confidence 7889999998999999997533 33343 22 22221 221 11356799999999
Q ss_pred EEEEECCCCEEEEEECCCCc
Q 004302 409 LLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 409 LYVAD~gN~rI~v~d~~~g~ 428 (762)
|+++-.....-..||..+|.
T Consensus 245 ll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred eeeeccCCCceEEEEeeCCc
Confidence 99987766666667766554
No 378
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=53.23 E-value=89 Score=34.59 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=58.4
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCC-cEEEEecCCCCCCCCcccccccCCcce---EEEecCCCeEEEEeCCCCeEEEEe
Q 004302 272 ADESGNRLFLSDSNHHRIIVFDGNG-KILDCIGSCPGFEDGEFESSKLMRPAA---SFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 272 VD~s~g~LYVADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~~~~a~fn~P~G---Iavd~~~g~LYVADt~NhrIRkid 347 (762)
|..++++.|++|.+. -++.+|.++ +-...+|+-+ -..|.+ +.+. +...||+|. .+-+..+|
T Consensus 219 v~vsdnr~y~vvy~e-gvlivd~s~~ssp~~~gsye-----------t~~p~~~s~v~Vs--~~~~Yvadg-a~gl~~id 283 (370)
T COG5276 219 VSVSDNRAYLVVYDE-GVLIVDVSGPSSPTVFGSYE-----------TSNPVSISTVPVS--GEYAYVADG-AKGLPIID 283 (370)
T ss_pred EEecCCeeEEEEccc-ceEEEecCCCCCceEeeccc-----------cCCcccccceecc--cceeeeecc-ccCceeEe
Confidence 334588999999754 566777765 3345666521 122444 4774 789999995 34455555
Q ss_pred CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 348 MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 348 ~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
.++..=.++.+.. ... | .+-.||... ++.+||||..+..|
T Consensus 284 isnp~spfl~ss~--~t~------------g-----------------~~a~gi~ay-~~y~yiadkn~g~v 323 (370)
T COG5276 284 ISNPPSPFLSSSL--DTA------------G-----------------YQAAGIRAY-GNYNYIADKNTGAV 323 (370)
T ss_pred ccCCCCCchhccc--cCC------------C-----------------ccccceEEe-cCeeEeccCCceEE
Confidence 4433222222111 000 1 134578886 89999999876554
No 379
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=52.41 E-value=2.1e+02 Score=31.71 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCC
Q 004302 276 GNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGR 350 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~ 350 (762)
...+|+.+. .|.|+++|.++.-...+|+..+ .-++|.... .....|+-+...+|+.+|+..
T Consensus 65 ~~~~~~G~~-dg~vr~~Dln~~~~~~igth~~------------~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 65 ESTIVTGGL-DGQVRRYDLNTGNEDQIGTHDE------------GIRCIEYSY-EVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CceEEEecc-CceEEEEEecCCcceeeccCCC------------ceEEEEeec-cCCeEEEcccCccEEEEeccc
Confidence 446666654 6899999998888888988421 035677765 567889999999999999754
No 380
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=52.21 E-value=2.1e+02 Score=32.79 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=28.5
Q ss_pred ceEEEcCCCcEEEEECCCCEEEEEECCCCcEE
Q 004302 399 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 399 ~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
+.+.++.||.++++-....+||+||+.+|++.
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCCCcEe
Confidence 56778889999999999999999999998763
No 381
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=51.14 E-value=41 Score=30.49 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=16.9
Q ss_pred CCCEEEEEEe----ccCCCCccCCCCcchhhcHHHHHH
Q 004302 107 GGAFLVLAGR----FVDNCDSLIAGCGTVVTFEKVKSI 140 (762)
Q Consensus 107 rGK~VvLnFW----AtWC~pC~~p~C~~~~emP~L~~L 140 (762)
..+.|+|.-. ++|||. | .+..-.|+++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~-----C--~~ak~lL~~~ 40 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGF-----S--ARAVQILKAC 40 (97)
T ss_pred ccCCEEEEEccCCCCCCCch-----H--HHHHHHHHHc
Confidence 3456666655 378975 4 7766666665
No 382
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=50.86 E-value=4.2e+02 Score=30.13 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CCEEEEEeCCCcEEEEEcC-C-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-N-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL 353 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I 353 (762)
..+++.|-+..+.|+++.. + +......|.+ ...-.|=.+ |+++++..... +..|+++|+.++..
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~------------~~ct~G~f~-pdGKr~~tgy~-dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQALCKVMSGHN------------SPCTCGEFI-PDGKRILTGYD-DGTIIVWNPKTGQP 224 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcceeeEecCCC------------CCccccccc-CCCceEEEEec-CceEEEEecCCCce
Confidence 4567777777788888776 3 3333333322 111223333 34677776665 88999999998854
Q ss_pred EE
Q 004302 354 ET 355 (762)
Q Consensus 354 ~T 355 (762)
.-
T Consensus 225 ~~ 226 (399)
T KOG0296|consen 225 LH 226 (399)
T ss_pred eE
Confidence 33
No 383
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=49.19 E-value=73 Score=37.38 Aligned_cols=85 Identities=6% Similarity=-0.011 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceee
Q 004302 103 FFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILL 182 (762)
Q Consensus 103 Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~ 182 (762)
+..+.+..-+.-|-...||.| ......++++....+.+.+-.|... ...++.+++++
T Consensus 111 i~~~~~~~~i~~fv~~~Cp~C-------p~~v~~~~~~a~~~~~i~~~~id~~----------~~~~~~~~~~v------ 167 (517)
T PRK15317 111 IKALDGDFHFETYVSLSCHNC-------PDVVQALNLMAVLNPNITHTMIDGA----------LFQDEVEARNI------ 167 (517)
T ss_pred HHhcCCCeEEEEEEcCCCCCc-------HHHHHHHHHHHHhCCCceEEEEEch----------hCHhHHHhcCC------
Confidence 344566677889999999754 8888999999998888665555322 22333444432
Q ss_pred CCCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 183 SNKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 183 D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
++||.++++.+ ..+.|..+.+++...+.
T Consensus 168 ---------~~VP~~~i~~~----~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 168 ---------MAVPTVFLNGE----EFGQGRMTLEEILAKLD 195 (517)
T ss_pred ---------cccCEEEECCc----EEEecCCCHHHHHHHHh
Confidence 35777777643 23567777665555544
No 384
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=48.88 E-value=5.4e+02 Score=30.78 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=91.0
Q ss_pred CEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEE
Q 004302 277 NRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLET 355 (762)
Q Consensus 277 g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~T 355 (762)
+..+++.+....|..++. +|..+..-.. |. +..=.++++.. ++.++|.-+..-.+|++|..+|...-
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~--GH---------~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLV--GH---------FGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeecc--CC---------CCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEE
Confidence 456677778888878887 5665544222 22 22356788874 78899999988999999988775443
Q ss_pred -EeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEc
Q 004302 356 -VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK 434 (762)
Q Consensus 356 -iaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~ 434 (762)
+.|.. =.+.+++..+.+.++=...+.|++|+..++....+..
T Consensus 286 ~l~gh~-------------------------------------stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 286 SLQGHT-------------------------------------SSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred EecCCC-------------------------------------ceEEEEEccCceEeeccCCceEEEEeccCcceEEEec
Confidence 33221 0123333345555555667889999988877655543
Q ss_pred CCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEE
Q 004302 435 GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN 513 (762)
Q Consensus 435 G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~st 513 (762)
|... + .-++ ..++.+.|+=++...|+.++..++.+.+
T Consensus 329 ~h~~-------------------------------------~----V~~v-~~~~~~lvsgs~d~~v~VW~~~~~~cl~ 365 (537)
T KOG0274|consen 329 GHTG-------------------------------------P----VNCV-QLDEPLLVSGSYDGTVKVWDPRTGKCLK 365 (537)
T ss_pred cccc-------------------------------------c----EEEE-EecCCEEEEEecCceEEEEEhhhceeee
Confidence 3220 0 0111 1235566666777789999988776653
No 385
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=48.75 E-value=2.8e+02 Score=34.57 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=22.3
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCCCCE
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMGRRV 352 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~~g~ 352 (762)
=.|+++|. -+.+.|+-...+-+..+|..++.
T Consensus 496 V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 496 VTGLAVDG-TNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred eeEEEecC-CCceEEEccCcceEEEEecCCcc
Confidence 37899996 56677776666777777876554
No 386
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=48.63 E-value=23 Score=31.87 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=33.4
Q ss_pred EEeccCCCCccCCCC--c-chhhcHHHHHHHHHCCC--eEEEEEEc
Q 004302 114 AGRFVDNCDSLIAGC--G-TVVTFEKVKSIQQSFPQ--LQVIGFLH 154 (762)
Q Consensus 114 nFWAtWC~pC~~p~C--~-~~~emP~L~~L~~~y~~--v~VvgV~~ 154 (762)
.||..|=-|| .+| . ..+.|.+|++-.++||+ +.+||+..
T Consensus 27 rywt~w~lp~--f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~ 70 (84)
T cd00307 27 RFRTSSWQSC--GPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDP 70 (84)
T ss_pred ccHhhhcCCC--CCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 4999999988 888 3 27889999999999998 99999863
No 387
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=47.87 E-value=57 Score=38.12 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=53.5
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCc-EEEEecCCCCCCCCcccccccCCc-ceEEEecCCCeEEEEeCCCCeEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGK-ILDCIGSCPGFEDGEFESSKLMRP-AASFYHKDDDCLYIVDSENHAIRR 345 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~-i~~~iGsG~G~~DG~~~~a~fn~P-~GIavd~~~g~LYVADt~NhrIRk 345 (762)
.|||++|++..|+|+-....+|..||..-+ ....+ ....| ..+++.+ .|.+.+|-+.+++|..
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--------------~y~~Plstvaf~~-~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--------------TYSHPLSTVAFSE-CGTYLCAGNSKGELIA 276 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccccccee--------------eecCCcceeeecC-CceEEEeecCCceEEE
Confidence 589999999999999999999999997432 11111 12346 5688885 7889999999999999
Q ss_pred EeCCCC
Q 004302 346 ADMGRR 351 (762)
Q Consensus 346 id~~~g 351 (762)
+|+.+.
T Consensus 277 YD~R~~ 282 (673)
T KOG4378|consen 277 YDMRST 282 (673)
T ss_pred EecccC
Confidence 998643
No 388
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=47.30 E-value=18 Score=41.68 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.5
Q ss_pred cCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 004302 260 RNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGK 297 (762)
Q Consensus 260 ~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~ 297 (762)
...+|+.|+|+.+| .+|..|+.|-+.|.+.+.+.+++
T Consensus 462 g~~~fylphgl~~d-kdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 462 GKNLFYLPHGLSID-KDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred cCCceecCCcceec-CCCcEEeecccchhhhhcccccc
Confidence 46799999999999 69999999999999999988764
No 389
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=47.17 E-value=3.5e+02 Score=31.61 Aligned_cols=30 Identities=17% Similarity=0.013 Sum_probs=25.1
Q ss_pred CCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 395 LIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
.+.-+.|.+..||..+|+-...++|.+|..
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 445677888888999999988899999976
No 390
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=46.85 E-value=52 Score=29.83 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=40.4
Q ss_pred EEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccc
Q 004302 114 AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQME 191 (762)
Q Consensus 114 nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ 191 (762)
-|..++|+.| ++....|++..- +++++-|.-+. .+.+.+.+++.+.+...--++...+..++.
T Consensus 3 iY~~~~C~~c-------~ka~~~L~~~~i---~~~~idi~~~~-----~~~~~l~~~~~~~~~~~~~li~~~~~~~~~ 65 (105)
T cd02977 3 IYGNPNCSTS-------RKALAWLEEHGI---EYEFIDYLKEP-----PTKEELKELLAKLGLGVEDLFNTRGTPYRK 65 (105)
T ss_pred EEECCCCHHH-------HHHHHHHHHcCC---CcEEEeeccCC-----CCHHHHHHHHHhcCCCHHHHHhcCCchHHH
Confidence 4667899755 888777776411 15555554332 468899999999887666666555444443
No 391
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=46.83 E-value=41 Score=30.61 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=14.0
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHH
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSI 140 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L 140 (762)
|+-|-.+|||.| .+..-.|+++
T Consensus 10 Vvvysk~~Cp~C-------~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMC-------HVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHH-------HHHHHHHHHc
Confidence 344667999755 6666555554
No 392
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=46.76 E-value=63 Score=37.53 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=53.1
Q ss_pred CcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcc
Q 004302 320 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 399 (762)
Q Consensus 320 ~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~ 399 (762)
.|.-+-++|++.++|++-..+.+|+.+|..++.|.--++ .. |..-.
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd----------------~h------------------Lg~i~ 346 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD----------------RH------------------LGAIL 346 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH----------------hh------------------hhhee
Confidence 378888999777999999999999999987665321111 11 22334
Q ss_pred eEEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 400 HLMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 400 gIavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
.|.+-++|.=+|+-+.-..+++|+...+
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCC
Confidence 5777778888888877778888876554
No 393
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.42 E-value=5.9e+02 Score=32.49 Aligned_cols=75 Identities=8% Similarity=0.135 Sum_probs=53.9
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEe
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRAD 347 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid 347 (762)
.|+-+| ++.++++-+..++|.+++. +.+.+.++-. ....+.|+++||. |.-+-+-+..+.|+++.
T Consensus 134 Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~------------H~s~VKGvs~DP~-Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 134 DVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRG------------HQSLVKGVSWDPI-GKYFASQSDDRTLKVWR 199 (942)
T ss_pred eeccCC-CccEEEEecccceEEEEccccceeeeeeec------------ccccccceEECCc-cCeeeeecCCceEEEEE
Confidence 456677 7889999999999999997 5555555422 2344899999994 55666677788888887
Q ss_pred C-CCCEEEEEe
Q 004302 348 M-GRRVLETVY 357 (762)
Q Consensus 348 ~-~~g~I~Tia 357 (762)
. +.+..+++.
T Consensus 200 t~dw~i~k~It 210 (942)
T KOG0973|consen 200 TSDWGIEKSIT 210 (942)
T ss_pred cccceeeEeec
Confidence 4 345666663
No 394
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.37 E-value=2.2e+02 Score=34.87 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=50.6
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEE
Q 004302 324 SFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK 403 (762)
Q Consensus 324 Iavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIav 403 (762)
+++++++..||-+= +++|-.+|..++.+. ...|.+ .....=+.+++
T Consensus 25 ~~~s~nG~~L~t~~--~d~Vi~idv~t~~~~--l~s~~~------------------------------ed~d~ita~~l 70 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC--GDRVIIIDVATGSIA--LPSGSN------------------------------EDEDEITALAL 70 (775)
T ss_pred eeECCCCCEEEEec--CceEEEEEccCCcee--cccCCc------------------------------cchhhhheeee
Confidence 78888666776654 578999999888875 122210 01223457888
Q ss_pred cCCCcEEEEECCCCEEEEEECCCCcEE
Q 004302 404 SEDDNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 404 d~dG~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
++|+...++=..+.-+++|+..+|.+.
T Consensus 71 ~~d~~~L~~a~rs~llrv~~L~tgk~i 97 (775)
T KOG0319|consen 71 TPDEEVLVTASRSQLLRVWSLPTGKLI 97 (775)
T ss_pred cCCccEEEEeeccceEEEEEcccchHh
Confidence 888877777777888899999888543
No 395
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=44.96 E-value=5.4e+02 Score=29.63 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=74.4
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCCCcE-EEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGNGKI-LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i-~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.++.++| ++.-.++-++...++..|.+.+. ....- | .-+.=..|+.+| ++....+-..++.|+.+
T Consensus 119 l~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K---g---------H~~WVlcvawsP-Dgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 119 LSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK---G---------HKNWVLCVAWSP-DGKKIASGSKDGSIRLW 184 (480)
T ss_pred EEEEecC-CCceEEecCCCceEEeeccCCCCcceeec---C---------CccEEEEEEECC-CcchhhccccCCeEEEe
Confidence 4566777 67788888999999999985432 22221 1 235567789998 56666788899999999
Q ss_pred eCCCCEE--EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 347 DMGRRVL--ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~g~I--~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
|+++|.- .++.|.- -||+ ++ =-.|.++. +....+.+-...+.|++||.
T Consensus 185 dpktg~~~g~~l~gH~----------K~It---~L---------------awep~hl~--p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHK----------KWIT---AL---------------AWEPLHLV--PPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred cCCCCCcccccccCcc----------ccee---EE---------------eecccccC--CCccceecccCCCCEEEEEc
Confidence 9887642 2222210 1221 11 01344432 45566667777788899988
Q ss_pred CCCcEE
Q 004302 425 ASGEIK 430 (762)
Q Consensus 425 ~~g~I~ 430 (762)
..+...
T Consensus 235 ~~~~~~ 240 (480)
T KOG0271|consen 235 KLGTCV 240 (480)
T ss_pred cCceEE
Confidence 766543
No 396
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=43.11 E-value=46 Score=35.52 Aligned_cols=31 Identities=6% Similarity=-0.101 Sum_probs=25.4
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHH
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQS 143 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~ 143 (762)
-.+|.+|..|-=..||.| ++..+.+..+.+.
T Consensus 115 ~~ak~~I~vFtDp~CpyC-------~kl~~~l~~~~~~ 145 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYC-------KQFWQQARPWVDS 145 (251)
T ss_pred CCCCeEEEEEECCCChhH-------HHHHHHHHHHhhc
Confidence 368899999999999755 8988888887654
No 397
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=43.01 E-value=5.6e+02 Score=29.27 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=51.7
Q ss_pred ccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEE-EeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCC
Q 004302 317 KLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLET-VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL 395 (762)
Q Consensus 317 ~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~T-iaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L 395 (762)
.+..=..|+++| .+.-|++-+....|..+|+.+|.+.. +.|. .
T Consensus 150 HlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGh-----------------------------------i 193 (460)
T KOG0285|consen 150 HLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGH-----------------------------------I 193 (460)
T ss_pred ccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecch-----------------------------------h
Confidence 455667799998 67777888888899999999887654 3322 1
Q ss_pred CCcceEEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 396 IFPWHLMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 396 ~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
..-+||+|+...-...+--....|.-||+..+++
T Consensus 194 ~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 194 ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred heeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 1356788875433333333456788888876653
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=42.89 E-value=2.9e+02 Score=33.19 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=71.4
Q ss_pred cceEEEecCCCeEEEEeCCC------CeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCC
Q 004302 321 PAASFYHKDDDCLYIVDSEN------HAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS 394 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~N------hrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 394 (762)
-.|+++- ++.|||+-..+ +.+-++|+..+..+.++..-.
T Consensus 325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--------------------------------- 369 (571)
T KOG4441|consen 325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--------------------------------- 369 (571)
T ss_pred cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---------------------------------
Confidence 4667775 68999998777 467778877776666543210
Q ss_pred CCCcceEEEcCCCcEEEEECCC-----CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCc
Q 004302 395 LIFPWHLMKSEDDNLLIINRSF-----ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSS 469 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN-----~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~ 469 (762)
-..=.|+++- +|.||+.=-.+ +.|-+||+.+.....+ +
T Consensus 370 ~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a----------------------------------- 412 (571)
T KOG4441|consen 370 KRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-A----------------------------------- 412 (571)
T ss_pred ccccceeEEE-CCEEEEEeccccccccccEEEecCCCCccccc-C-----------------------------------
Confidence 0012355554 78888873222 2355666655544322 0
Q ss_pred ccccCCCCcceeeeEEecCCEEEEEEC---CC---CEEEEEECCCCcEEEE
Q 004302 470 CSLKELPYAGLISSSIAFQNHILLCDI---VG---QRIMRLNRESGVCSNF 514 (762)
Q Consensus 470 ~~~~~~p~~~lgsav~~~~g~LYVADt---~N---hRIrkidl~~~~~sti 514 (762)
..+....+.++++.+|.||++=- .+ ..+..+|+.++.-+.+
T Consensus 413 ----~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 413 ----PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred ----CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 01111234667788999999843 33 6789999999877654
No 399
>PRK10638 glutaredoxin 3; Provisional
Probab=42.65 E-value=61 Score=28.03 Aligned_cols=51 Identities=12% Similarity=-0.050 Sum_probs=26.4
Q ss_pred EEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCC-Ccceee
Q 004302 114 AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYI-TFPILL 182 (762)
Q Consensus 114 nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i-tfPVl~ 182 (762)
-|-.+||+.| .+..-.|++. ++.+--++++. +.+....+.+..+. ++|++.
T Consensus 6 ly~~~~Cp~C-------~~a~~~L~~~-----gi~y~~~dv~~------~~~~~~~l~~~~g~~~vP~i~ 57 (83)
T PRK10638 6 IYTKATCPFC-------HRAKALLNSK-----GVSFQEIPIDG------DAAKREEMIKRSGRTTVPQIF 57 (83)
T ss_pred EEECCCChhH-------HHHHHHHHHc-----CCCcEEEECCC------CHHHHHHHHHHhCCCCcCEEE
Confidence 3446899755 7777777754 32233344443 23333445554444 356553
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=8.4e+02 Score=31.15 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=38.5
Q ss_pred HHHHhhhccccCCccchhhHHHHHHhcCCCccceEEeeeeeEEEee
Q 004302 688 ARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQF 733 (762)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (762)
+|+-++|...|++.+--++-|.+|-|++-----|=|+|-=|.|..|
T Consensus 607 k~ydeVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~L 652 (1202)
T KOG0292|consen 607 KKYDEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFEL 652 (1202)
T ss_pred hhhHHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheee
Confidence 4556788888899999999999999998777788999998888654
No 401
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=42.40 E-value=5.7e+02 Score=29.17 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=50.1
Q ss_pred ceEEEecCCCeEEEEeCCCC-eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 322 AASFYHKDDDCLYIVDSENH-AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 322 ~GIavd~~~g~LYVADt~Nh-rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
+.|++++ +|.+.-+-++.+ -||+|+..+|....-.-.| . ..-.=+.
T Consensus 177 Aalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG------------------~--------------~~~~IyS 223 (391)
T KOG2110|consen 177 AALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRG------------------T--------------YPVSIYS 223 (391)
T ss_pred eEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCC------------------c--------------eeeEEEE
Confidence 5689997 566666666665 5677776666544333222 1 0123567
Q ss_pred EEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 401 LMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 401 Iavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
|++++++.++.+-..+..|.+|.++.-
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999999988653
No 402
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=42.39 E-value=65 Score=28.53 Aligned_cols=28 Identities=7% Similarity=-0.181 Sum_probs=16.5
Q ss_pred CCCEEEEEEec----cCCCCccCCCCcchhhcHHHHHHH
Q 004302 107 GGAFLVLAGRF----VDNCDSLIAGCGTVVTFEKVKSIQ 141 (762)
Q Consensus 107 rGK~VvLnFWA----tWC~pC~~p~C~~~~emP~L~~L~ 141 (762)
+.++|||---. +||+ .| .+..-.|+++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp-----~C--~~ak~~L~~~~ 37 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCG-----FS--RKVVQILNQLG 37 (90)
T ss_pred ccCCEEEEEcCCCCCCCCc-----HH--HHHHHHHHHcC
Confidence 44565554332 4776 45 77777777663
No 403
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=41.91 E-value=33 Score=29.06 Aligned_cols=37 Identities=5% Similarity=-0.175 Sum_probs=26.9
Q ss_pred EEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC-eEEEEEEcC
Q 004302 112 VLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ-LQVIGFLHG 155 (762)
Q Consensus 112 vLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~-v~VvgV~~~ 155 (762)
|..|+...|+ +| ....|.++++.+.+++ ++|.-+...
T Consensus 1 i~~f~d~~Cp-----~C--~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCP-----YC--YLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCH-----hH--HhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 3568888996 55 9999999999766665 665555443
No 404
>PHA03098 kelch-like protein; Provisional
Probab=41.68 E-value=6.3e+02 Score=29.47 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=17.5
Q ss_pred CCcEEEEEC---C---CCEEEEEECCCCcEEE
Q 004302 406 DDNLLIINR---S---FETLWIMDLASGEIKE 431 (762)
Q Consensus 406 dG~LYVAD~---g---N~rI~v~d~~~g~I~t 431 (762)
+|.|||.-- . .+.+.+||+.++....
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 689999632 1 2568888887776553
No 405
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=41.37 E-value=28 Score=38.21 Aligned_cols=29 Identities=3% Similarity=-0.156 Sum_probs=20.9
Q ss_pred EEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCC
Q 004302 110 FLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFP 145 (762)
Q Consensus 110 ~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~ 145 (762)
.-++.|+|+||+ +| .+--|..++.--+.+
T Consensus 45 iW~VdFYAPWC~-----HC--KkLePiWdeVG~elk 73 (468)
T KOG4277|consen 45 IWFVDFYAPWCA-----HC--KKLEPIWDEVGHELK 73 (468)
T ss_pred eEEEEeechhhh-----hc--ccccchhHHhCcchh
Confidence 458899999998 66 777777776633333
No 406
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.96 E-value=1.3e+02 Score=33.95 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=49.5
Q ss_pred CeEEEEeCCCCeEEEEeCCCCE-EEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcE
Q 004302 331 DCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL 409 (762)
Q Consensus 331 g~LYVADt~NhrIRkid~~~g~-I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~L 409 (762)
+...+.-+....|+.+|..++. +.|+.|. .++-+|+++.|.|..
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-----------------------------------dnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-----------------------------------DNWVRGVAFSPGGKY 348 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecc-----------------------------------cceeeeeEEcCCCeE
Confidence 4566666777889999988764 4566443 245778999999998
Q ss_pred EEEECCCCEEEEEECCCCcE
Q 004302 410 LIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 410 YVAD~gN~rI~v~d~~~g~I 429 (762)
.++-..+..+++||.+++.-
T Consensus 349 i~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred EEEEecCCcEEEEEecccee
Confidence 88888999999999987653
No 407
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=40.69 E-value=71 Score=27.92 Aligned_cols=54 Identities=7% Similarity=-0.138 Sum_probs=28.6
Q ss_pred EeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcC--CCcceeeCCC
Q 004302 115 GRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEY--ITFPILLSNK 185 (762)
Q Consensus 115 FWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~--itfPVl~D~~ 185 (762)
|=-+|||.| .+.--.|++. ++.+.-|..+. ...+..++++++.. -+.|++..++
T Consensus 6 yt~~~CPyC-------~~ak~~L~~~-----g~~~~~i~~~~-----~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 6 YTKPGCPYC-------KRAKRLLDRK-----GVDYEEIDVDD-----DEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EECCCCchH-------HHHHHHHHHc-----CCCcEEEEecC-----CcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 444678755 6666555533 43333333433 13356777777763 4566554433
No 408
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.32 E-value=1.9e+02 Score=35.63 Aligned_cols=105 Identities=16% Similarity=0.261 Sum_probs=76.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
.+++++ ++++.++-..++.|.+++.+ ++.++.++.+ .-.+..+-| ++...|.-+.|+.++.|
T Consensus 377 Rsl~vS--~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--------------y~l~~~Fvp-gd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 377 RSLCVS--SDSILLASGAGESIKIWNRDTLKCIRTITCG--------------YILASKFVP-GDRYIVLGTKNGELQVF 439 (888)
T ss_pred eEEEee--cCceeeeecCCCcEEEEEccCcceeEEeccc--------------cEEEEEecC-CCceEEEeccCCceEEE
Confidence 457886 67889999999999999985 8999988764 133345555 67777888899999999
Q ss_pred eCCCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEEC
Q 004302 347 DMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDL 424 (762)
Q Consensus 347 d~~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~ 424 (762)
|..+. .+.|+- .. .| .-|.|++.|||.=+|+-...+.|..||.
T Consensus 440 dlaS~~l~Eti~-AH----------------dg------------------aIWsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 440 DLASASLVETIR-AH----------------DG------------------AIWSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred Eeehhhhhhhhh-cc----------------cc------------------ceeeeeecCCCCceEEecCCcEEEEEeE
Confidence 97654 333431 00 01 2467888888888888888899988875
No 409
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.23 E-value=6.6e+02 Score=29.33 Aligned_cols=74 Identities=15% Similarity=0.030 Sum_probs=49.4
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceE
Q 004302 322 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 401 (762)
Q Consensus 322 ~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gI 401 (762)
.++..++.+++| ++-+....+-.-|..++...|.+..- ++ + + .=+..
T Consensus 307 ~~ls~h~tgeYl-lsAs~d~~w~Fsd~~~g~~lt~vs~~-----~s----------~----v-------------~~ts~ 353 (506)
T KOG0289|consen 307 TGLSLHPTGEYL-LSASNDGTWAFSDISSGSQLTVVSDE-----TS----------D----V-------------EYTSA 353 (506)
T ss_pred eeeeeccCCcEE-EEecCCceEEEEEccCCcEEEEEeec-----cc----------c----c-------------eeEEe
Confidence 677788755444 44444556666677777666664320 00 0 0 12457
Q ss_pred EEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 402 MKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 402 avd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
++.|||.|+.+-+.+..|++||..++.
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCcc
Confidence 788999999999999999999998765
No 410
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.22 E-value=4.3e+02 Score=30.61 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.9
Q ss_pred ecCCEEEEEECCCCEEEEEECCCC
Q 004302 486 AFQNHILLCDIVGQRIMRLNRESG 509 (762)
Q Consensus 486 ~~~g~LYVADt~NhRIrkidl~~~ 509 (762)
..++.+.+..-.+|.|+.+|++-.
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchh
Confidence 457788899999999999998743
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=39.70 E-value=6.7e+02 Score=29.20 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=18.6
Q ss_pred eEEecCCEEEEEECCCCEEEEEECCCCcEEE
Q 004302 483 SSIAFQNHILLCDIVGQRIMRLNRESGVCSN 513 (762)
Q Consensus 483 av~~~~g~LYVADt~NhRIrkidl~~~~~st 513 (762)
+.+..+|.|||.- +.+-.+|++++.=+.
T Consensus 402 ~~~~~~~~IYv~G---G~~e~ydp~~~~W~~ 429 (480)
T PHA02790 402 CALVFGRRLFLVG---RNAEFYCESSNTWTL 429 (480)
T ss_pred eEEEECCEEEEEC---CceEEecCCCCcEeE
Confidence 3345688999975 246678887765544
No 412
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=39.17 E-value=3.5e+02 Score=30.42 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=46.9
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeC
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADM 348 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~ 348 (762)
...+|.+-+.++-|.++|. +|+....+-. .... ..+..-..++++|++..||--+ |++||+||.
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~-ydh~------de~taAhsL~Fs~DGeqlfaGy--krcirvFdt 186 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRA-YDHQ------DEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDT 186 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhh-hhhH------HhhhhheeEEecCCCCeEeecc--cceEEEeec
Confidence 5678888889999999998 7877665422 1111 2355678899999888887654 789999996
No 413
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=39.03 E-value=37 Score=34.85 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=31.5
Q ss_pred CCCEEEEEEeccCCCCccCCCCcchhhcHHH---HHHHHHCCC-eEEEEEEcC
Q 004302 107 GGAFLVLAGRFVDNCDSLIAGCGTVVTFEKV---KSIQQSFPQ-LQVIGFLHG 155 (762)
Q Consensus 107 rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L---~~L~~~y~~-v~VvgV~~~ 155 (762)
.|++.|+.|+..-|| +| ...-|.+ +.+.+.+++ +.++-++.+
T Consensus 36 ~~~~~VvEffdy~Cp-----hC--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCP-----HC--YQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCc-----cH--HHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 478889999999996 66 7655554 889999986 666665553
No 414
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=38.87 E-value=47 Score=24.67 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.5
Q ss_pred CcEEEEECCCCEEEEEECCCCcEE
Q 004302 407 DNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
|.+|+. +.++.|+.+|.++|++.
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEE
Confidence 467888 88889999999888753
No 415
>PHA00407 phage lambda Rz1-like protein
Probab=38.50 E-value=17 Score=31.91 Aligned_cols=48 Identities=31% Similarity=0.364 Sum_probs=33.2
Q ss_pred ccchhhhhhccccccccCCCc---hhHhHHHHHHHhhhcccccccccccccc
Q 004302 3 LRNGCLRRISRFLPHIYSGSH---FQQSRRAIINSLASSLITFPRECEQISR 51 (762)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (762)
+|.+|+++|-|+.+-=++.+- +++.+.|||-+|+.-+.++ ++|.+.|.
T Consensus 4 lR~lr~~r~lr~~s~~y~~stkktl~rwkaaLIGlllicv~tI-SGCaSes~ 54 (84)
T PHA00407 4 LRKLRLRRILRLRSMKYRLSTKKTLRRWKAALIGLLLICVATI-SGCASESN 54 (84)
T ss_pred HHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHH-hhhhhccc
Confidence 588888888888777666665 4455668887777666555 48865544
No 416
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=38.26 E-value=2.7e+02 Score=27.19 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=46.7
Q ss_pred CCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcce
Q 004302 106 RGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPI 180 (762)
Q Consensus 106 ~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPV 180 (762)
-.-|+|||.|=-.|=+-| ++.=.-|.++.++-.++.+|.+- +..++..|.+-++++.|.
T Consensus 21 t~~rlvViRFGr~~Dp~C-------~~mD~~L~~i~~~vsnfa~Iylv---------dideV~~~~~~~~l~~p~ 79 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTC-------MKMDELLSSIAEDVSNFAVIYLV---------DIDEVPDFVKMYELYDPP 79 (142)
T ss_pred ccceEEEEEecCCCCchH-------hhHHHHHHHHHHHHhhceEEEEE---------ecchhhhhhhhhcccCCc
Confidence 356899999999999765 88888899999888886666652 234788898888888775
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=38.15 E-value=8.6e+02 Score=30.47 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=43.6
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEe----------------cCCCeEEEEeC
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYH----------------KDDDCLYIVDS 338 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd----------------~~~g~LYVADt 338 (762)
++.||+++. +++|+.+|. +|+.+=.+-.......+. .-..-.|+++- ..+++||+...
T Consensus 194 gg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~~~~~~~----~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 194 GDTLYLCTP-HNKVIALDAATGKEKWKFDPKLKTEAGR----QHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred CCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccc----ccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 689999976 568999997 687764332210000000 00001222221 02468888765
Q ss_pred CCCeEEEEeCCCCEEEEEeec
Q 004302 339 ENHAIRRADMGRRVLETVYPT 359 (762)
Q Consensus 339 ~NhrIRkid~~~g~I~TiaG~ 359 (762)
+.++..+|.++|.+.--.+.
T Consensus 269 -Dg~LiALDA~TGk~~W~fg~ 288 (764)
T TIGR03074 269 -DARLIALDADTGKLCEDFGN 288 (764)
T ss_pred -CCeEEEEECCCCCEEEEecC
Confidence 67899999988766544443
No 418
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=37.98 E-value=71 Score=29.18 Aligned_cols=54 Identities=11% Similarity=0.325 Sum_probs=29.2
Q ss_pred hhhcHHHHH-HHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCC
Q 004302 131 VVTFEKVKS-IQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNK 185 (762)
Q Consensus 131 ~~emP~L~~-L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~ 185 (762)
...+..|+. |.++|++ |.+--|.+.... .++...+..+-+.+..+-||+++=++
T Consensus 19 keTyeWL~aal~RKyp~~~f~~~YiDi~~p~-~~~~~~~~a~~I~ede~fYPlV~i~~ 75 (93)
T PF07315_consen 19 KETYEWLEAALKRKYPDQPFEFTYIDIENPP-ENDHDQQFAERILEDELFYPLVVIND 75 (93)
T ss_dssp HHHHHHHHHHHHHH-TTS-EEEEEEETTT-----HHHHHHHHHHHTTSS-SSEEEETT
T ss_pred hhHHHHHHHHHhCcCCCCceEEEEEecCCCC-ccHHHHHHHHHHHhcccccceEEECC
Confidence 445556665 6778998 777777665411 11122344445666788889765433
No 419
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=36.34 E-value=5.7e+02 Score=27.42 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=29.1
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEE
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETV 356 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~Ti 356 (762)
=.||.+-|.++.||-. +..++|+.||+.++..+.+
T Consensus 29 l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 29 LVGIDFRPANGQLYGL-GSTGRLYTINPATGAATPV 63 (236)
T ss_pred EEEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEe
Confidence 4678888999999988 4468899999999986665
No 420
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=35.76 E-value=29 Score=26.25 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=17.5
Q ss_pred CCcceEEEecCCCeEEEEeCCC
Q 004302 319 MRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 319 n~P~GIavd~~~g~LYVADt~N 340 (762)
..|.+|++|+ .+++||+-.-|
T Consensus 13 ~~~~~IavD~-~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDS-NGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECC-CCCEEEEEeec
Confidence 4699999996 79999987654
No 421
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=35.57 E-value=9.3e+02 Score=29.69 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=80.3
Q ss_pred CccchhhhhhhhccCCCCcccccCcccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccc
Q 004302 238 GLKCTWAKQAEVLKEPHACSSVRNLLLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSK 317 (762)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~ 317 (762)
.+..+|++-..+-+...-....+ ++=..=|.|+.=+ .+.||+-+...-|+.+.. |+.+..+- |+
T Consensus 115 ~iSgSWD~TakvW~~~~l~~~l~-gH~asVWAv~~l~--e~~~vTgsaDKtIklWk~-~~~l~tf~---gH--------- 178 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELVYSLQ-GHTASVWAVASLP--ENTYVTGSADKTIKLWKG-GTLLKTFS---GH--------- 178 (745)
T ss_pred eEecccccceEEecchhhhcccC-CcchheeeeeecC--CCcEEeccCcceeeeccC-Cchhhhhc---cc---------
Confidence 45566666555544321111111 1111124444443 338999888888887765 65555542 22
Q ss_pred cCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCC
Q 004302 318 LMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 397 (762)
Q Consensus 318 fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~ 397 (762)
...=.|+++-++.+ |++=+..+-||.+++++..+....|+- ++
T Consensus 179 tD~VRgL~vl~~~~--flScsNDg~Ir~w~~~ge~l~~~~ght-----------------------------------n~ 221 (745)
T KOG0301|consen 179 TDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDGEVLLEMHGHT-----------------------------------NF 221 (745)
T ss_pred hhheeeeEEecCCC--eEeecCCceEEEEeccCceeeeeeccc-----------------------------------eE
Confidence 23467788875333 334344568999999888888886652 12
Q ss_pred cceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 398 PWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 398 P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
-+.|....++.+.|+-..+..+++|+.+
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 3445555678888888888889888764
No 422
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.31 E-value=5.4e+02 Score=31.39 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCCcceEEEcCCCcEEEEECCCCE-EEEEECCCCcEEEEEcCCceeeEEec
Q 004302 395 LIFPWHLMKSEDDNLLIINRSFET-LWIMDLASGEIKEAVKGFSKVLEICG 444 (762)
Q Consensus 395 L~~P~gIavd~dG~LYVAD~gN~r-I~v~d~~~g~I~ti~~G~g~~~~~~G 444 (762)
+..|.=+.+-..+.+++-|..+.+ |++++...-.+ .+.++|..+.+++
T Consensus 432 i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v--~w~d~g~lVai~~ 480 (794)
T KOG0276|consen 432 IFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHV--YWSDNGELVAIAG 480 (794)
T ss_pred ecCCceEEEEeCCeEEEEEcccceEEEEEeecccee--EEecCCCEEEEEe
Confidence 455666777677888888966665 67888765443 2466776655544
No 423
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=35.07 E-value=6.5e+02 Score=27.85 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=68.8
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
.+..|..++ +|+||+.+... .++.+|. +|+.+-..-.+ + . +..-....+ .++.+|+.. .++
T Consensus 102 ~~~~~~~~~----~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~-~--------~-~~~~~~~v~--~~~~v~~~s-~~g 163 (370)
T COG1520 102 QLSGPILGS----DGKIYVGSWDG-KLYALDASTGTLVWSRNVG-G--------S-PYYASPPVV--GDGTVYVGT-DDG 163 (370)
T ss_pred eccCceEEe----CCeEEEecccc-eEEEEECCCCcEEEEEecC-C--------C-eEEecCcEE--cCcEEEEec-CCC
Confidence 466666555 68899999765 8999998 89776543221 1 0 111122333 257787764 456
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECC-CCEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRS-FETLW 420 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~g-N~rI~ 420 (762)
.+..++.++|...=....... . + ......|. ..+|.+|+...+ +.+++
T Consensus 164 ~~~al~~~tG~~~W~~~~~~~--~------------~-------------~~~~~~~~----~~~~~vy~~~~~~~~~~~ 212 (370)
T COG1520 164 HLYALNADTGTLKWTYETPAP--L------------S-------------LSIYGSPA----IASGTVYVGSDGYDGILY 212 (370)
T ss_pred eEEEEEccCCcEEEEEecCCc--c------------c-------------cccccCce----eecceEEEecCCCcceEE
Confidence 688888776654332222100 0 0 01122333 347899998765 55899
Q ss_pred EEECCCCcE
Q 004302 421 IMDLASGEI 429 (762)
Q Consensus 421 v~d~~~g~I 429 (762)
.+|..+|..
T Consensus 213 a~~~~~G~~ 221 (370)
T COG1520 213 ALNAEDGTL 221 (370)
T ss_pred EEEccCCcE
Confidence 999987764
No 424
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.17 E-value=70 Score=23.73 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.7
Q ss_pred CEEEEEECCCCEEEEEECCCCcEE
Q 004302 489 NHILLCDIVGQRIMRLNRESGVCS 512 (762)
Q Consensus 489 g~LYVADt~NhRIrkidl~~~~~s 512 (762)
|.||+. +.+.+|..+|.+||.+.
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEE
Confidence 468888 99999999999998764
No 425
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=33.48 E-value=1.7e+02 Score=35.70 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=88.9
Q ss_pred cHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhc------CCCcceeeCCCCccccccC---ceE----EEEc
Q 004302 134 FEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKE------YITFPILLSNKNFPQMENG---ACY----LLSK 200 (762)
Q Consensus 134 mP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~------~itfPVl~D~~~~~~~~yg---v~t----~lId 200 (762)
|--|+++.++.+++.||-.+.. .+.+.+.+|+... |=+|||=+=--......|- +.+ -+--
T Consensus 183 lGlLKki~~~R~~LklIimSAT------lda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E 256 (674)
T KOG0922|consen 183 LGLLKKILKKRPDLKLIIMSAT------LDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTE 256 (674)
T ss_pred HHHHHHHHhcCCCceEEEEeee------ecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccC
Confidence 4467888888888887776544 3678888888773 3346642210001111120 001 1226
Q ss_pred CCCCEEEEecCCcCHHHHHHHHHHHHHhhccCCCCCCCcc----chhhhhhhhccCCCCcccccCcccC---CcceEEEc
Q 004302 201 DFGNARVFHENSLDIGMLNKAVEELIMQQQENSSSPSGLK----CTWAKQAEVLKEPHACSSVRNLLLH---FPGCISAD 273 (762)
Q Consensus 201 ~~G~iv~~~~G~~~~~~L~~~l~~ll~~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~L~---~P~gIAVD 273 (762)
+.|.|..+..|..+.+.+.+.+.+......+. ....+++ -+...|..++. |.|.. .++.-|. ..+.|.+|
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~-~~~~~lply~aL~~e~Q~rvF~-p~p~g-~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPED-CPELILPLYGALPSEEQSRVFD-PAPPG-KRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhcccc-CcceeeeecccCCHHHhhcccc-CCCCC-cceEEEEcceeeeeEEec
Confidence 78999999999988888877777766553222 1111111 23445555654 33322 2233333 23556664
Q ss_pred cCCCEEEEEeCCCcEEEEEcC-CC
Q 004302 274 ESGNRLFLSDSNHHRIIVFDG-NG 296 (762)
Q Consensus 274 ~s~g~LYVADs~nhrI~v~d~-~G 296 (762)
|-.||.|+|--...++++ +|
T Consensus 334 ---GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 334 ---GIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred ---ceEEEEcCCceEEEeeccccC
Confidence 889999999999999998 55
No 426
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=33.09 E-value=1.9e+02 Score=33.86 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeC
Q 004302 104 FKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLS 183 (762)
Q Consensus 104 sd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D 183 (762)
..+.+++-+.-|-..-||. | ....-.+++|....|.+..-.|... ...++.+++++
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~-----C--p~~v~~~~~~a~~~p~i~~~~id~~----------~~~~~~~~~~v------- 168 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQN-----C--PDVVQALNQMALLNPNISHTMIDGA----------LFQDEVEALGI------- 168 (515)
T ss_pred HhcCCCeEEEEEEeCCCCC-----C--HHHHHHHHHHHHhCCCceEEEEEch----------hCHHHHHhcCC-------
Confidence 4456777788999999975 5 7778888889888888654444322 23334444432
Q ss_pred CCCccccccCceEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 184 NKNFPQMENGACYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 184 ~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
+.||.++|+.+ ..+.|..+.+++.+.+.
T Consensus 169 --------~~VP~~~i~~~----~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 169 --------QGVPAVFLNGE----EFHNGRMDLAELLEKLE 196 (515)
T ss_pred --------cccCEEEECCc----EEEecCCCHHHHHHHHh
Confidence 35777777643 23567777766644443
No 427
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=33.08 E-value=7.5e+02 Score=27.81 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=69.3
Q ss_pred cccCCc-ceEEEccCCCEEEEEeCCCcEEEEEcC--CCcEEEEecCCCCCCCCcccccccCCcceEEE-ecCCCeEEEEe
Q 004302 262 LLLHFP-GCISADESGNRLFLSDSNHHRIIVFDG--NGKILDCIGSCPGFEDGEFESSKLMRPAASFY-HKDDDCLYIVD 337 (762)
Q Consensus 262 ~~L~~P-~gIAVD~s~g~LYVADs~nhrI~v~d~--~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIav-d~~~g~LYVAD 337 (762)
..|+.| .+|.++ .++|.|+- .++|.++.- +-+.+..+-+ .+.|.|++. .|....-++|=
T Consensus 91 l~f~~~I~~V~l~--r~riVvvl--~~~I~VytF~~n~k~l~~~et-------------~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 91 LSFNSEIKAVKLR--RDRIVVVL--ENKIYVYTFPDNPKLLHVIET-------------RSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EEeccceeeEEEc--CCeEEEEe--cCeEEEEEcCCChhheeeeec-------------ccCCCceEeecCCCCceEEEc
Confidence 357777 567886 57777765 467777765 3455555532 356888863 33333444444
Q ss_pred CCC--CeEEEEeCCCCEE---EEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEE
Q 004302 338 SEN--HAIRRADMGRRVL---ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII 412 (762)
Q Consensus 338 t~N--hrIRkid~~~g~I---~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVA 412 (762)
.++ +.||..|+..... .+| . +....=.-|++..+|.+.-+
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I-~----------------------------------AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSII-N----------------------------------AHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEE-E----------------------------------cccCceeEEEEcCCccEEEE
Confidence 444 4777777755443 111 0 11112345777778888777
Q ss_pred ECCCCE-EEEEECCCCc
Q 004302 413 NRSFET-LWIMDLASGE 428 (762)
Q Consensus 413 D~gN~r-I~v~d~~~g~ 428 (762)
-+.+++ ||+||..+|+
T Consensus 199 aStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGT 215 (346)
T ss_pred eccCcEEEEEEEcCCCc
Confidence 777775 7899988875
No 428
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=32.50 E-value=78 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=19.6
Q ss_pred CCCcEEEEECCCCEEEEEECCCCcEE
Q 004302 405 EDDNLLIINRSFETLWIMDLASGEIK 430 (762)
Q Consensus 405 ~dG~LYVAD~gN~rI~v~d~~~g~I~ 430 (762)
.+|.+|+++. ++.++.+|.++|++.
T Consensus 5 ~~~~v~~~~~-~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGST-DGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcC-CCEEEEEEcccCcEE
Confidence 3678898874 689999999888753
No 429
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=32.22 E-value=7.6e+02 Score=30.20 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=43.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEecCC--CCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 276 GNRLFLSDSNHHRIIVFDGNGKILDCIGSC--PGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~~G~i~~~iGsG--~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
+...+|+=.|.++|+.+|.++.-+ +|.. -|.. ..=..+|+.+.+..+|+.-..++.|..+|+.
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l--~G~~~~~GH~---------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRL--VGGRLNLGHT---------GSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred CceeEEEccCCceeeeeeecccee--ecceeecccc---------cccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 667899999999999999865322 2220 1110 1123467777788888888888889888864
No 430
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=31.76 E-value=4.3e+02 Score=29.59 Aligned_cols=71 Identities=24% Similarity=0.289 Sum_probs=42.6
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeC
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADM 348 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~ 348 (762)
.|.+.|+++.|.| -+.|.-++.+|-+.- ..++...+. |+ .-..-..+-+++ .+.|||+-+..+.|+.+|-
T Consensus 221 siSfHPsGefllv-gTdHp~~rlYdv~T~-QcfvsanPd--~q-----ht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 221 SISFHPSGEFLLV-GTDHPTLRLYDVNTY-QCFVSANPD--DQ-----HTGAITQVRYSS-TGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred eEeecCCCceEEE-ecCCCceeEEeccce-eEeeecCcc--cc-----cccceeEEEecC-CccEEEEeccCCcEEeecc
Confidence 4566665555544 456777777877532 122222111 10 111234567775 7999999999999999984
Q ss_pred C
Q 004302 349 G 349 (762)
Q Consensus 349 ~ 349 (762)
-
T Consensus 291 V 291 (430)
T KOG0640|consen 291 V 291 (430)
T ss_pred c
Confidence 3
No 431
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.46 E-value=72 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=17.5
Q ss_pred EEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 401 LMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 401 Iavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
++++ +|.|||.+. +++++.+|.++
T Consensus 17 ~~v~-~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVA-GGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp -EEC-TSEEEEE-T-TSEEEEEETT-
T ss_pred CEEE-CCEEEEEcC-CCEEEEEeCCC
Confidence 3665 799999996 78999998753
No 432
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=31.14 E-value=75 Score=29.46 Aligned_cols=37 Identities=16% Similarity=0.397 Sum_probs=28.0
Q ss_pred EeccCCC-CccCCCCcc-hhhcHHHHHHHHHCCC--eEEEEEEc
Q 004302 115 GRFVDNC-DSLIAGCGT-VVTFEKVKSIQQSFPQ--LQVIGFLH 154 (762)
Q Consensus 115 FWAtWC~-pC~~p~C~~-~~emP~L~~L~~~y~~--v~VvgV~~ 154 (762)
+|-+|=. .. .|.. .+.|-+|++-.+.|++ |.+||++.
T Consensus 45 yW~mwklP~f---~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 45 YWTMWKLPMF---GCTDPAQVLREIEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred EEeeccCCCC---CCCCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 8999864 22 3532 5778888888899998 99999864
No 433
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.85 E-value=4.8e+02 Score=32.27 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=59.3
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcce
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 400 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~g 400 (762)
=+.|+++|.+++-||+-+-.++||.++.....|.--. +.. .--+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-----Dl~------------------------------~lITA 456 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-----DLR------------------------------DLITA 456 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeeh-----hhh------------------------------hhhee
Confidence 3678999999999999999999999998877764431 100 12457
Q ss_pred EEEcCCCcEEEEECCCCEEEEEECCCCcE
Q 004302 401 LMKSEDDNLLIINRSFETLWIMDLASGEI 429 (762)
Q Consensus 401 Iavd~dG~LYVAD~gN~rI~v~d~~~g~I 429 (762)
+++.|||...|.=+.|+..+.|+..+...
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 99999999999999999999999877654
No 434
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.22 E-value=2.3e+02 Score=32.54 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=37.8
Q ss_pred cCCC--cEEEEECCC-CEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccCCCCcce
Q 004302 404 SEDD--NLLIINRSF-ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGL 480 (762)
Q Consensus 404 d~dG--~LYVAD~gN-~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~~p~~~l 480 (762)
..|| -||.+|..+ ..++.+|+.++++..+-.|.+. .. +
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----------------------------------~~----~ 84 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----------------------------------NT----F 84 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------------------------------------T----T
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----------------------------------Cc----c
Confidence 3455 467777544 4699999999998876433320 00 1
Q ss_pred eeeEEecCCEEEEEECCCCEEEEEECCCCcEEEE
Q 004302 481 ISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF 514 (762)
Q Consensus 481 gsav~~~~g~LYVADt~NhRIrkidl~~~~~sti 514 (762)
|..+++.+..||-.. .+++++++|++|+....|
T Consensus 85 g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 85 GGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp T-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEE
T ss_pred ceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEE
Confidence 233445566664332 347899999999887765
No 435
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=29.93 E-value=55 Score=30.31 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=40.4
Q ss_pred EeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcccccc
Q 004302 115 GRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQMEN 192 (762)
Q Consensus 115 FWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~y 192 (762)
|..++|+.| ++.+-.|++. + ++++-+..+. .+.+.+.+++++.+..+--++...+..++..
T Consensus 4 Y~~~~C~~c-------~ka~~~L~~~-----~i~~~~idi~~~~-----~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l 66 (111)
T cd03036 4 YEYPKCSTC-------RKAKKWLDEH-----GVDYTAIDIVEEP-----PSKEELKKWLEKSGLPLKKFFNTSGKSYREL 66 (111)
T ss_pred EECCCCHHH-------HHHHHHHHHc-----CCceEEecccCCc-----ccHHHHHHHHHHcCCCHHHHHhcCCchHHhC
Confidence 567889755 8888777764 4 5555443332 4678899999999887655555554444433
Q ss_pred C
Q 004302 193 G 193 (762)
Q Consensus 193 g 193 (762)
+
T Consensus 67 ~ 67 (111)
T cd03036 67 G 67 (111)
T ss_pred C
Confidence 3
No 436
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=29.23 E-value=8e+02 Score=26.98 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=61.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeC
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADM 348 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~ 348 (762)
++.+|....+|.+-++...|+++|. .|+.+..+-+..+ -.-|+..|+++.+-|.+. .++|-.||.
T Consensus 70 l~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-------------ni~i~wsp~g~~~~~~~k-dD~it~id~ 135 (313)
T KOG1407|consen 70 LCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-------------NINITWSPDGEYIAVGNK-DDRITFIDA 135 (313)
T ss_pred heeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-------------ceEEEEcCCCCEEEEecC-cccEEEEEe
Confidence 3445566677777788888999886 7776665543101 122566665555444443 335555554
Q ss_pred CCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECC
Q 004302 349 GRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLA 425 (762)
Q Consensus 349 ~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~ 425 (762)
.+..+..- ......-.-++..-++++|+...|+++|.++..-
T Consensus 136 r~~~~~~~-----------------------------------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 136 RTYKIVNE-----------------------------------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred cccceeeh-----------------------------------hcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 33222111 0111223345565568999999999999887653
No 437
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.98 E-value=8.7e+02 Score=27.32 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=66.3
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcCC-----CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDGN-----GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~~-----G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
..|||+ +.-.++-+...+|.+||.. |.++.-. |..+..+|..|.... + .++-+.+|.
T Consensus 47 tavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--------gsitaL~F~~~~S~s------h-LlS~sdDG~ 108 (362)
T KOG0294|consen 47 TALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHA--------GSITALKFYPPLSKS------H-LLSGSDDGH 108 (362)
T ss_pred eEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccc--------cceEEEEecCCcchh------h-eeeecCCCc
Confidence 568886 4444555677899999984 3333322 233455677676422 1 133445566
Q ss_pred EEEEeCC-CCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 343 IRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 343 IRkid~~-~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
|-.++.. ...+.++-+. .. .-.+|++.|.|.|-++=.+.+.++.
T Consensus 109 i~iw~~~~W~~~~slK~H--------------------------------~~---~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH--------------------------------KG---QVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred EEEEEcCCeEEeeeeccc--------------------------------cc---ccceeEecCCCceEEEEcCCceeee
Confidence 6666532 1223333111 01 1457899899999999999999999
Q ss_pred EECCCCcEE
Q 004302 422 MDLASGEIK 430 (762)
Q Consensus 422 ~d~~~g~I~ 430 (762)
||+-+|...
T Consensus 154 WNLV~Gr~a 162 (362)
T KOG0294|consen 154 WNLVRGRVA 162 (362)
T ss_pred ehhhcCccc
Confidence 998776543
No 438
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=28.91 E-value=1e+02 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.134 Sum_probs=23.4
Q ss_pred CcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 397 FPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 397 ~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
....|++.+++.++++=..++.|++||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999888888899999986
No 439
>PF12601 Rubi_NSP_C: Rubivirus non-structural protein; InterPro: IPR022245 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF05407 from PFAM. The Rubella virus (RUB) nonstructural (NS) protein (NSP) ORF encodes a protease that cleaves the NSP precursor (240 kDa) at a single site to produce two products. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity
Probab=28.59 E-value=21 Score=29.19 Aligned_cols=12 Identities=50% Similarity=1.010 Sum_probs=10.1
Q ss_pred cchhhhhhcccc
Q 004302 607 VGVAQLWYDELD 618 (762)
Q Consensus 607 ~~~~~~~~~~~~ 618 (762)
-|+||.|||+|.
T Consensus 35 eglaqayyddle 46 (66)
T PF12601_consen 35 EGLAQAYYDDLE 46 (66)
T ss_pred hhHHHHhhhhhh
Confidence 379999999974
No 440
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=28.51 E-value=9.7e+02 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=19.5
Q ss_pred EEEEECCCC-EEEEEECCCCcEEEEeecccc
Q 004302 491 ILLCDIVGQ-RIMRLNRESGVCSNFQFSNFA 520 (762)
Q Consensus 491 LYVADt~Nh-RIrkidl~~~~~sti~~s~~G 520 (762)
+|++|..++ .|.+++++++.++.+++++.+
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred EEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence 455665554 777788888777766655543
No 441
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=28.29 E-value=4.9e+02 Score=27.77 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=55.2
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEcC--CCc--E----EEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC
Q 004302 269 CISADESGNRLFLSDSNHHRIIVFDG--NGK--I----LDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN 340 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~nhrI~v~d~--~G~--i----~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N 340 (762)
.|++++ +|.||..+. +..+.+... ++. + -..+|. .| -+...-|+.++ ++.||+.+...
T Consensus 85 ~i~~d~-~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~-~G----------W~~f~~vfa~~-~GvLY~i~~dg 150 (229)
T PF14517_consen 85 FIFFDP-TGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGG-TG----------WNDFDAVFAGP-NGVLYAITPDG 150 (229)
T ss_dssp EEEE-T-TS-EEEEET-T-EEEEES---STT--HHH-HSEEEE--SS----------GGGEEEEEE-T-TS-EEEEETTE
T ss_pred EEEecC-CccEEEecc-ccceeeccCCCccCcchhhccceeccc-CC----------CccceEEEeCC-CccEEEEcCCC
Confidence 788885 788985554 455566554 221 1 123322 12 34467788887 78999999654
Q ss_pred CeEEEEe-CCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEE
Q 004302 341 HAIRRAD-MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETL 419 (762)
Q Consensus 341 hrIRkid-~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI 419 (762)
|+.+.. +.++ + .+|.-. -++. .......+.-|...++|+||..| .|..|
T Consensus 151 -~~~~~~~p~~~--------~---------~~W~~~-s~~v----------~~~gw~~~~~i~~~~~g~L~~V~-~~G~l 200 (229)
T PF14517_consen 151 -RLYRRYRPDGG--------S---------DRWLSG-SGLV----------GGGGWDSFHFIFFSPDGNLWAVK-SNGKL 200 (229)
T ss_dssp --EEEE---SST--------T-----------HHHH--EEE----------ESSSGGGEEEEEE-TTS-EEEE--ETTEE
T ss_pred -ceEEeCCCCCC--------C---------Cccccc-ccee----------ccCCcccceEEeeCCCCcEEEEe-cCCEE
Confidence 666652 2111 0 122210 0110 01123458889999999999994 57888
Q ss_pred EEEECC
Q 004302 420 WIMDLA 425 (762)
Q Consensus 420 ~v~d~~ 425 (762)
++..+.
T Consensus 201 yr~~~p 206 (229)
T PF14517_consen 201 YRGRPP 206 (229)
T ss_dssp EEES--
T ss_pred eccCCc
Confidence 876553
No 442
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=28.23 E-value=1.3e+03 Score=29.01 Aligned_cols=74 Identities=22% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCC--CCCCC--Cccccc--ccCCcceEEEecCCCeEEEEeC---------C
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSC--PGFED--GEFESS--KLMRPAASFYHKDDDCLYIVDS---------E 339 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG--~G~~D--G~~~~a--~fn~P~GIavd~~~g~LYVADt---------~ 339 (762)
+++||+... +.|++-+|. +|+..-.+|.+ -.... |..... ....| -.+. ++.+||.-+ -
T Consensus 260 ~~rV~~~T~-Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~--P~V~--~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 260 ARRIILPTS-DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSP--PLVA--GTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred CCEEEEecC-CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccC--CEEE--CCEEEEEecccccccccCC
Confidence 578888765 678888887 78888777652 11111 111111 11111 1222 578888642 2
Q ss_pred CCeEEEEeCCCCEEE
Q 004302 340 NHAIRRADMGRRVLE 354 (762)
Q Consensus 340 NhrIRkid~~~g~I~ 354 (762)
.+.|+-+|..+|.+.
T Consensus 335 ~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 335 SGVIRAFDVNTGALV 349 (764)
T ss_pred CcEEEEEECCCCcEe
Confidence 468999999888654
No 443
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=28.20 E-value=1.3e+02 Score=24.94 Aligned_cols=21 Identities=0% Similarity=-0.429 Sum_probs=13.3
Q ss_pred EEEeccCCCCccCCCCcchhhcHHHHHH
Q 004302 113 LAGRFVDNCDSLIAGCGTVVTFEKVKSI 140 (762)
Q Consensus 113 LnFWAtWC~pC~~p~C~~~~emP~L~~L 140 (762)
+-|-.+||+.| .+..-.|++.
T Consensus 4 ~lys~~~Cp~C-------~~ak~~L~~~ 24 (72)
T cd03029 4 SLFTKPGCPFC-------ARAKAALQEN 24 (72)
T ss_pred EEEECCCCHHH-------HHHHHHHHHc
Confidence 33556899755 7776666643
No 444
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.88 E-value=8.6e+02 Score=26.89 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=40.9
Q ss_pred CCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEE
Q 004302 275 SGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL 353 (762)
Q Consensus 275 s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I 353 (762)
.++.+|+. ..+..|.-+|. +|+.+=.... .+ ....++.|...+ +|.|||.+... .+..+|..+|..
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~-~~------~~~~~~~~~~~~----~G~i~~g~~~g-~~y~ld~~~G~~ 133 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPL-LG------AVAQLSGPILGS----DGKIYVGSWDG-KLYALDASTGTL 133 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccC-cC------cceeccCceEEe----CCeEEEecccc-eEEEEECCCCcE
Confidence 47899998 44558888888 4554411110 00 123555565555 57899998755 889999865543
No 445
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=27.84 E-value=1.1e+02 Score=32.38 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=34.5
Q ss_pred CCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCccee
Q 004302 126 AGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPIL 181 (762)
Q Consensus 126 p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl 181 (762)
|.||+-.+|-.|.+. +..|+||.+ +...+.+|.++.+++|.+.
T Consensus 50 PgCGkg~D~~~LA~~-----G~~V~GvDl--------S~~Ai~~~~~e~~~~~~~~ 92 (226)
T PRK13256 50 PMCGCSIDMLFFLSK-----GVKVIGIEL--------SEKAVLSFFSQNTINYEVI 92 (226)
T ss_pred eCCCChHHHHHHHhC-----CCcEEEEec--------CHHHHHHHHHHcCCCccee
Confidence 578878888888764 688999975 4688999999999987655
No 446
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=27.56 E-value=6.3e+02 Score=28.44 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=74.9
Q ss_pred cccccCcccCCc-ceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccC-CcceEEEecCCCeE
Q 004302 256 CSSVRNLLLHFP-GCISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLM-RPAASFYHKDDDCL 333 (762)
Q Consensus 256 ~~~~~~~~L~~P-~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn-~P~GIavd~~~g~L 333 (762)
+++++...|..| ++.-..|.+.+.+|+-..+..=++++.+...-.+... ..|| .++ .|.-..+|. .|..
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~---d~d~-----dln~sas~~~fdr-~g~y 167 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK---DDDG-----DLNSSASHGVFDR-RGKY 167 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC---CCcc-----ccccccccccccC-CCCE
Confidence 467888889999 6777777788888776544443343332222222222 1122 222 244346675 4445
Q ss_pred EEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEE
Q 004302 334 YIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIIN 413 (762)
Q Consensus 334 YVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD 413 (762)
.++-+.-+.+.+++.++-.+ ++.- + . .....-..|-+...|..++.+
T Consensus 168 IitGtsKGkllv~~a~t~e~--vas~----r--------------i-------------ts~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLEC--VASF----R--------------I-------------TSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred EEEecCcceEEEEecchhee--eeee----e--------------e-------------chheeeeEEEEeccCcEEEEe
Confidence 55566677888887654422 2100 0 0 001233467787889999999
Q ss_pred CCCCEEEEEECC
Q 004302 414 RSFETLWIMDLA 425 (762)
Q Consensus 414 ~gN~rI~v~d~~ 425 (762)
+....||.|+.+
T Consensus 215 tsDRvIR~ye~~ 226 (405)
T KOG1273|consen 215 TSDRVIRTYEIS 226 (405)
T ss_pred cCCceEEEEehh
Confidence 999999999874
No 447
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=2.4e+02 Score=32.21 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=55.2
Q ss_pred CcceEEEcCC--CcEEEEECCCCEEEEEECCCCcEEEEEcCCceeeEEeceehhhhhhhhccCCccccccccCCcccccC
Q 004302 397 FPWHLMKSED--DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE 474 (762)
Q Consensus 397 ~P~gIavd~d--G~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g~~~~~~G~~~~~r~~~~~~~p~~~~~~~~d~~~~~~~ 474 (762)
+++++.+-+. .+-+++-+..|.+|.||+..+. +.+. -. .+..
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~-~f----------------------------------d~~E 247 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVA-QF----------------------------------DFLE 247 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccC-ccee-Ee----------------------------------cccc
Confidence 6788888766 7899999999999999987554 2221 00 0001
Q ss_pred CCCcceeeeEEecCCEEEEEECCCCEEEEEECCCCcEEEEeecc
Q 004302 475 LPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSN 518 (762)
Q Consensus 475 ~p~~~lgsav~~~~g~LYVADt~NhRIrkidl~~~~~sti~~s~ 518 (762)
.|. .-.++.+.++.||++|+-. .+-.||+.++.+--..+.|
T Consensus 248 ~~i--s~~~l~p~gn~Iy~gn~~g-~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 248 NPI--SSTGLTPSGNFIYTGNTKG-QLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred Ccc--eeeeecCCCcEEEEecccc-hhheecccCceeeccccCC
Confidence 111 1134556788999999875 5889999998876544433
No 448
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=26.51 E-value=8e+02 Score=30.24 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=71.2
Q ss_pred ccCCcceEEEccCCCEEEEEeCCCcEEEEEcCCCcEEE-EecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 263 LLHFPGCISADESGNRLFLSDSNHHRIIVFDGNGKILD-CIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 263 ~L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G~i~~-~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
+...=.|+|+=+ +.=|++-.+..-|+.++.+|.++. ..|. ..| -..|.+.. ++.+.|+=.++.
T Consensus 178 HtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~gh-----------tn~--vYsis~~~-~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 178 HTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMHGH-----------TNF--VYSISMAL-SDGLIVSTGEDR 241 (745)
T ss_pred chhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeeecc-----------ceE--EEEEEecC-CCCeEEEecCCc
Confidence 444556788863 334677778889999999887664 4443 122 23344333 567888888999
Q ss_pred eEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEE
Q 004302 342 AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWI 421 (762)
Q Consensus 342 rIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v 421 (762)
.+|.++-. --+..| -. .+ .+-|...+-++|.|+|+-+ .++||+
T Consensus 242 tlriW~~~-e~~q~I-~l-----Pt-----------------------------tsiWsa~~L~NgDIvvg~S-DG~VrV 284 (745)
T KOG0301|consen 242 TLRIWKKD-ECVQVI-TL-----PT-----------------------------TSIWSAKVLLNGDIVVGGS-DGRVRV 284 (745)
T ss_pred eEEEeecC-ceEEEE-ec-----Cc-----------------------------cceEEEEEeeCCCEEEecc-CceEEE
Confidence 99988743 222222 00 00 1357788878999999875 578999
Q ss_pred EECC
Q 004302 422 MDLA 425 (762)
Q Consensus 422 ~d~~ 425 (762)
|..+
T Consensus 285 fT~~ 288 (745)
T KOG0301|consen 285 FTVD 288 (745)
T ss_pred EEec
Confidence 8765
No 449
>PRK10824 glutaredoxin-4; Provisional
Probab=26.28 E-value=1.4e+02 Score=28.39 Aligned_cols=26 Identities=8% Similarity=-0.118 Sum_probs=16.8
Q ss_pred CCEEEEEEec----cCCCCccCCCCcchhhcHHHHHH
Q 004302 108 GAFLVLAGRF----VDNCDSLIAGCGTVVTFEKVKSI 140 (762)
Q Consensus 108 GK~VvLnFWA----tWC~pC~~p~C~~~~emP~L~~L 140 (762)
.++|||--.. +|||.| .+..--|+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc-------~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFS-------AQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchH-------HHHHHHHHHc
Confidence 4556665554 499755 7777777766
No 450
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=25.80 E-value=1.1e+03 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=24.3
Q ss_pred eeeeEEecCCEEEEEECCCCEEEEEECCCCcEE
Q 004302 480 LISSSIAFQNHILLCDIVGQRIMRLNRESGVCS 512 (762)
Q Consensus 480 lgsav~~~~g~LYVADt~NhRIrkidl~~~~~s 512 (762)
+.+.++..++.+..+-.+...||.+|..+|...
T Consensus 196 FVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 196 FVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred heeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 345555667777888888889999998877543
No 451
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.27 E-value=3.8e+02 Score=29.85 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=56.4
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCC-cc
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF-PW 399 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~-P~ 399 (762)
-+.|+++|..+.|.+|-+..+.||.++.+.. -.+.|.- ...+.. +.
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g~~~~ka-------------------------------~~~~~~PvL 76 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNS--GQLVPKA-------------------------------QQSHDGPVL 76 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecC--Ccccchh-------------------------------hhccCCCeE
Confidence 3668888877889999999999999986431 0111110 111223 46
Q ss_pred eEEEcCCCcEEEEECCCCEEEEEECCCCcEEEEEcCCc
Q 004302 400 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFS 437 (762)
Q Consensus 400 gIavd~dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g 437 (762)
.++...||....+-.-.+.+..||+.++.+..+.+=++
T Consensus 77 ~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 77 DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred EEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccc
Confidence 88888787644444456789999999999888754333
No 452
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=25.14 E-value=4.8e+02 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=22.3
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 321 PAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 321 P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
-.|+..|.+.|.|||+.. +-.|.|+..+
T Consensus 207 TEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 207 TEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred ccceeeccccceEEEeec-cceeeecccC
Confidence 468888878899999984 6678888754
No 453
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.11 E-value=1.8e+02 Score=26.99 Aligned_cols=63 Identities=8% Similarity=-0.050 Sum_probs=40.2
Q ss_pred EEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccc
Q 004302 114 AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQME 191 (762)
Q Consensus 114 nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ 191 (762)
-|.-.+|+.| ++..-.|++. + ++++-+.-+. .+.+.+.+++++.+..+--++...+..++.
T Consensus 4 iY~~~~C~~c-------~ka~~~L~~~-----gi~~~~idi~~~~-----~~~~el~~~~~~~~~~~~~l~n~~~~~~k~ 66 (115)
T cd03032 4 LYTSPSCSSC-------RKAKQWLEEH-----QIPFEERNLFKQP-----LTKEELKEILSLTENGVEDIISTRSKAFKN 66 (115)
T ss_pred EEeCCCCHHH-------HHHHHHHHHC-----CCceEEEecCCCc-----chHHHHHHHHHHhcCCHHHHHhcCcHHHHH
Confidence 4667889755 8877777764 4 4444443222 367889999999977665555555554444
Q ss_pred cC
Q 004302 192 NG 193 (762)
Q Consensus 192 yg 193 (762)
.+
T Consensus 67 l~ 68 (115)
T cd03032 67 LN 68 (115)
T ss_pred cC
Confidence 33
No 454
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.56 E-value=5.7e+02 Score=25.84 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=45.4
Q ss_pred eEEEccCCCEEEEEeCCC--cEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCC-----C
Q 004302 269 CISADESGNRLFLSDSNH--HRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSE-----N 340 (762)
Q Consensus 269 gIAVD~s~g~LYVADs~n--hrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~-----N 340 (762)
.|+.+|.+..|.++..+| ..|..+|.+ .+.+...- -.....++.+|++..|..+.+. .
T Consensus 105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------------~~~~t~~~WsPdGr~~~ta~t~~r~~~d 170 (194)
T PF08662_consen 105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------------HSDATDVEWSPDGRYLATATTSPRLRVD 170 (194)
T ss_pred EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--------------cCcEEEEEEcCCCCEEEEEEeccceecc
Confidence 477888777777777553 468888874 33332221 1125778999977777777653 4
Q ss_pred CeEEEEeCCCCEEEE
Q 004302 341 HAIRRADMGRRVLET 355 (762)
Q Consensus 341 hrIRkid~~~g~I~T 355 (762)
+.++.++..+..+..
T Consensus 171 ng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 171 NGFKIWSFQGRLLYK 185 (194)
T ss_pred ccEEEEEecCeEeEe
Confidence 556666665555544
No 455
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=24.44 E-value=1.2e+03 Score=28.78 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=66.6
Q ss_pred ceEEEccCCCEEEEE-eCCCcEEEEEcC-CCcEEE--EecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeE
Q 004302 268 GCISADESGNRLFLS-DSNHHRIIVFDG-NGKILD--CIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAI 343 (762)
Q Consensus 268 ~gIAVD~s~g~LYVA-Ds~nhrI~v~d~-~G~i~~--~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrI 343 (762)
|.||++|.++.+.|. |.| .+..|+. .+++.. .++. +=.+-..++.++ .+.=.++-+..++|
T Consensus 114 Wsiai~p~~~~l~IgcddG--vl~~~s~~p~~I~~~r~l~r------------q~sRvLslsw~~-~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 114 WSIAINPENTILAIGCDDG--VLYDFSIGPDKITYKRSLMR------------QKSRVLSLSWNP-TGTKIAGGSIDGVI 178 (691)
T ss_pred eEEEeCCccceEEeecCCc--eEEEEecCCceEEEEeeccc------------ccceEEEEEecC-CccEEEecccCceE
Confidence 678888877777777 544 3333333 344432 2222 112234466665 34334667778899
Q ss_pred EEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEE
Q 004302 344 RRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 423 (762)
Q Consensus 344 Rkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d 423 (762)
|.+|...+.--.+.-.+- .+..+. .=.--|+|.+-.++.|.-.|+ .+.|..||
T Consensus 179 riwd~~~~~t~~~~~~~~---------------d~l~k~-----------~~~iVWSv~~Lrd~tI~sgDS-~G~V~FWd 231 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQL---------------DRLSKR-----------EPTIVWSVLFLRDSTIASGDS-AGTVTFWD 231 (691)
T ss_pred EEEEcCCCceEEEeeecc---------------cccccC-----------CceEEEEEEEeecCcEEEecC-CceEEEEc
Confidence 999987664322221110 011000 001257787777788777775 57888888
Q ss_pred CCCCcE
Q 004302 424 LASGEI 429 (762)
Q Consensus 424 ~~~g~I 429 (762)
...|.+
T Consensus 232 ~~~gTL 237 (691)
T KOG2048|consen 232 SIFGTL 237 (691)
T ss_pred ccCcch
Confidence 876643
No 456
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.83 E-value=3.3e+02 Score=30.25 Aligned_cols=68 Identities=22% Similarity=0.387 Sum_probs=50.2
Q ss_pred cCCcceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCe
Q 004302 264 LHFPGCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHA 342 (762)
Q Consensus 264 L~~P~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~Nhr 342 (762)
=.|=..||++.+++.+.++-...|++.++|. +|.++..+ .+..-.|++... ++ |++-++.+.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--------------~l~D~cGva~~~-~~--f~~ssG~G~ 278 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--------------PLPDACGVAPTD-DG--FLVSSGQGQ 278 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--------------ccCceeeeeecC-Cc--eEEeCCCcc
Confidence 3567889999767788999999999999976 78887644 344456788764 34 666777777
Q ss_pred EEEEeC
Q 004302 343 IRRADM 348 (762)
Q Consensus 343 IRkid~ 348 (762)
+..++.
T Consensus 279 ~~~~~~ 284 (305)
T PF07433_consen 279 LIRLSP 284 (305)
T ss_pred EEEccC
Confidence 766654
No 457
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=23.22 E-value=2.9e+02 Score=32.25 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=35.8
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEEcCCC----cEEE--EecCCCCCCCCc-cccccc-CCcceEEEecCCCeEEEEe
Q 004302 266 FPGCISADESGNRLFLSDSNHHRIIVFDGNG----KILD--CIGSCPGFEDGE-FESSKL-MRPAASFYHKDDDCLYIVD 337 (762)
Q Consensus 266 ~P~gIAVD~s~g~LYVADs~nhrI~v~d~~G----~i~~--~iGsG~G~~DG~-~~~a~f-n~P~GIavd~~~g~LYVAD 337 (762)
.|..|.++-++..|||+...++-|+.+|-+. +.+. .+|+.....+-+ ....++ -.|+-|-++-++.+|||+.
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 4677788777889999999999999999742 3332 244311000000 000122 3589999998899999987
Q ss_pred C
Q 004302 338 S 338 (762)
Q Consensus 338 t 338 (762)
+
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 458
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=23.10 E-value=1.6e+02 Score=28.21 Aligned_cols=63 Identities=3% Similarity=-0.151 Sum_probs=37.8
Q ss_pred EEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcccc
Q 004302 113 LAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQM 190 (762)
Q Consensus 113 LnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~ 190 (762)
.-|...||+.| ++.+-.|++..- .++++-|.-+. .+.+.+.+++++.+..+--++...+..++
T Consensus 3 ~iY~~~~C~~C-------~ka~~~L~~~gi---~~~~idi~~~~-----~~~~eL~~~l~~~~~g~~~lin~~~~~~k 65 (131)
T PRK01655 3 TLFTSPSCTSC-------RKAKAWLEEHDI---PFTERNIFSSP-----LTIDEIKQILRMTEDGTDEIISTRSKVFQ 65 (131)
T ss_pred EEEeCCCChHH-------HHHHHHHHHcCC---CcEEeeccCCh-----hhHHHHHHHHHHhcCCHHHHHhcCcHHHH
Confidence 34677899755 887777765511 14444443222 36778999999887665445544444444
No 459
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=22.57 E-value=1e+03 Score=25.90 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=36.7
Q ss_pred CCEEEEEeC-CCcEEEEEcCC---CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCC-----------
Q 004302 276 GNRLFLSDS-NHHRIIVFDGN---GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSEN----------- 340 (762)
Q Consensus 276 ~g~LYVADs-~nhrI~v~d~~---G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~N----------- 340 (762)
++.|||.-. ..+.+.++|.+ .+......- +. .++ .. .+++.- ++.|||.-..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~-p~-------~~R-~~-~~~~~~--~~~iYv~GG~~~~~~~~~~~~~ 84 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADF-PG-------GPR-NQ-AVAAAI--DGKLYVFGGIGKANSEGSPQVF 84 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCC-CC-------CCc-cc-ceEEEE--CCEEEEEeCCCCCCCCCcceec
Confidence 689999643 23567777752 333332110 00 011 11 234443 68999987532
Q ss_pred CeEEEEeCCCCEEEEE
Q 004302 341 HAIRRADMGRRVLETV 356 (762)
Q Consensus 341 hrIRkid~~~g~I~Ti 356 (762)
+.+.++|+.++..+.+
T Consensus 85 ~~v~~Yd~~~~~W~~~ 100 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKL 100 (346)
T ss_pred ccEEEEECCCCEEecC
Confidence 3466777776666555
No 460
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=22.50 E-value=1.6e+02 Score=32.94 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=13.9
Q ss_pred CcEEEEECCCCEEEEEECCC
Q 004302 407 DNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 407 G~LYVAD~gN~rI~v~d~~~ 426 (762)
..+|..|.+ ..||+||..+
T Consensus 222 D~vYaGDl~-GnlwR~dl~~ 240 (335)
T PF05567_consen 222 DRVYAGDLG-GNLWRFDLSS 240 (335)
T ss_dssp -EEEEEETT-SEEEEEE--T
T ss_pred EEEEEEcCC-CcEEEEECCC
Confidence 379999986 7899999854
No 461
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=21.96 E-value=6e+02 Score=27.70 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=31.7
Q ss_pred ceEEEcC-CCcEEEEECCCCEEEEEECCCCcEEEEEcCCc
Q 004302 399 WHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFS 437 (762)
Q Consensus 399 ~gIavd~-dG~LYVAD~gN~rI~v~d~~~g~I~ti~~G~g 437 (762)
-.+-+|| +|.|+.|- |..+++.+|.++|+|+..+.|.-
T Consensus 118 Nam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred ceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCc
Confidence 4567775 58888887 89999999999999998887765
No 462
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=21.94 E-value=8.5e+02 Score=28.59 Aligned_cols=119 Identities=19% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEE
Q 004302 276 GNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLE 354 (762)
Q Consensus 276 ~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~ 354 (762)
+.+||-+ +..+.|+++|. .|.++..+-. =..+..+++||.+..+||- +..+.|..+++..
T Consensus 188 ~~rl~Ta-S~D~t~k~wdlS~g~LLlti~f-------------p~si~av~lDpae~~~yiG-t~~G~I~~~~~~~---- 248 (476)
T KOG0646|consen 188 NARLYTA-SEDRTIKLWDLSLGVLLLTITF-------------PSSIKAVALDPAERVVYIG-TEEGKIFQNLLFK---- 248 (476)
T ss_pred cceEEEe-cCCceEEEEEeccceeeEEEec-------------CCcceeEEEcccccEEEec-CCcceEEeeehhc----
Confidence 4566654 35778888887 5677665532 1347899999977777774 4556787776532
Q ss_pred EEeecCC-CCCCCCchhhhhhhccCccccCCCccCCCCCCCC--CCcceEEEcCCCcEEEEECCCCEEEEEECCCCc
Q 004302 355 TVYPTSG-ISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSL--IFPWHLMKSEDDNLLIINRSFETLWIMDLASGE 428 (762)
Q Consensus 355 TiaG~G~-~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L--~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g~ 428 (762)
..|.-. ..+++... .+... ..+. ... ..-+.++++-||+|+++-...+.|.+||..+..
T Consensus 249 -~~~~~~~v~~k~~~~-------~~t~~------~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 249 -LSGQSAGVNQKGRHE-------ENTQI------NVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred -CCccccccccccccc-------cccee------eeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 111100 00111000 00000 0000 001 145678998899999998888999999986643
No 463
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=21.78 E-value=2.2e+02 Score=33.29 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=38.7
Q ss_pred ccCCCEEEEEeCCCcEEEEEcC--CCcEE----EEecCC--CCCCCCcc---cccccCCcceEEEecCCCeEEEEeCCCC
Q 004302 273 DESGNRLFLSDSNHHRIIVFDG--NGKIL----DCIGSC--PGFEDGEF---ESSKLMRPAASFYHKDDDCLYIVDSENH 341 (762)
Q Consensus 273 D~s~g~LYVADs~nhrI~v~d~--~G~i~----~~iGsG--~G~~DG~~---~~a~fn~P~GIavd~~~g~LYVADt~Nh 341 (762)
+|....=||.-.-...|++|-. +|++. ..++.. .++.--.. -.+.---|..|.++.++..|||+.+..+
T Consensus 255 ~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G 334 (461)
T PF05694_consen 255 DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG 334 (461)
T ss_dssp STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTT
T ss_pred CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCC
Confidence 4556666776667777877754 45432 223221 11100000 0011134688888888999999999999
Q ss_pred eEEEEeCCCC
Q 004302 342 AIRRADMGRR 351 (762)
Q Consensus 342 rIRkid~~~g 351 (762)
-||.+|.++-
T Consensus 335 dvrqYDISDP 344 (461)
T PF05694_consen 335 DVRQYDISDP 344 (461)
T ss_dssp EEEEEE-SST
T ss_pred cEEEEecCCC
Confidence 9999998764
No 464
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.76 E-value=1.6e+03 Score=28.22 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=87.6
Q ss_pred hcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHH---hc---CCCcceeeCCCCcccccc---Cce---EE-EE
Q 004302 133 TFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLM---KE---YITFPILLSNKNFPQMEN---GAC---YL-LS 199 (762)
Q Consensus 133 emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~---k~---~itfPVl~D~~~~~~~~y---gv~---t~-lI 199 (762)
-|--|+.+..+..|+.+|-.+.. ++.++...|+- .+ |=+|||=+=-.......| .|+ ++ +-
T Consensus 487 lfGllk~~larRrdlKliVtSAT------m~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~ 560 (1042)
T KOG0924|consen 487 LFGLLKKVLARRRDLKLIVTSAT------MDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLS 560 (1042)
T ss_pred HHHHHHHHHHhhccceEEEeecc------ccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeecc
Confidence 35567777777778877765432 46667777765 12 235776442222222222 122 33 34
Q ss_pred cCCCCEEEEecCCcCHHHHHHHHHHHHHh-hccCCCCCCCccc----hhhhhhhhccCCCCcccccCcccC---CcceEE
Q 004302 200 KDFGNARVFHENSLDIGMLNKAVEELIMQ-QQENSSSPSGLKC----TWAKQAEVLKEPHACSSVRNLLLH---FPGCIS 271 (762)
Q Consensus 200 d~~G~iv~~~~G~~~~~~L~~~l~~ll~~-~~~~s~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~---~P~gIA 271 (762)
.+.|.++.+..|..+.+..-..|.+-+.| ...+++.+.+++. +-..|.++++.....- ++.-+. .-+.+.
T Consensus 561 ~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~v--RK~IvATNIAETSLT 638 (1042)
T KOG0924|consen 561 GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGV--RKCIVATNIAETSLT 638 (1042)
T ss_pred CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCc--eeEEEeccchhhcee
Confidence 46799999999998887766666666665 3444444555552 2344555555321111 110010 112233
Q ss_pred EccCCCEEEEEeCCCcEEEEEcC-CC
Q 004302 272 ADESGNRLFLSDSNHHRIIVFDG-NG 296 (762)
Q Consensus 272 VD~s~g~LYVADs~nhrI~v~d~-~G 296 (762)
| .|-.||-|+|-..+.+|++ .|
T Consensus 639 i---~gI~yVID~Gy~K~kvyn~~~G 661 (1042)
T KOG0924|consen 639 I---PGIRYVIDTGYCKLKVYNPRIG 661 (1042)
T ss_pred e---cceEEEEecCceeeeecccccc
Confidence 4 3788999999999999998 56
No 465
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=21.59 E-value=1.8e+02 Score=33.93 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCCccccCCCCC--CEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCC--eEEEEEEcCCCccCcC----------
Q 004302 97 VEDNIHFFKRGG--AFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQ--LQVIGFLHGCSTISAV---------- 162 (762)
Q Consensus 97 ~g~~v~Lsd~rG--K~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~---------- 162 (762)
+++.++|.++|| ++|++.-=+.-+ .+.|-..+...++..+ |.||.|..+.+.+.+.
T Consensus 285 ~~~~v~l~~LRg~~RvvIvAG~~e~v----------~~al~~ae~~r~~L~~r~VlvVPv~~~~~~~~~~~~~gfg~~s~ 354 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILAGTKESV----------TLAMQKAERYRTELLKRGVLLIPVVWGENKDPQPKKKGFGRSSK 354 (453)
T ss_pred CCCEEeHHHhcCcceEEEEECCHHHH----------HHHHHHhHHHHHHHHHcCcEEEEEecCCCCccccccccccccch
Confidence 356899999999 466666433222 5666666666666544 8889988764211000
Q ss_pred -----------CHH-----HHHHHHH--hcCCCcceeeCCCCc-cc---cccCc----e-EEEEcCCCCEEEEecCCcCH
Q 004302 163 -----------DQT-----RLVEMLM--KEYITFPILLSNKNF-PQ---MENGA----C-YLLSKDFGNARVFHENSLDI 215 (762)
Q Consensus 163 -----------~~~-----~v~~f~~--k~~itfPVl~D~~~~-~~---~~ygv----~-t~lId~~G~iv~~~~G~~~~ 215 (762)
-.+ ..+..++ |.-.-.||..+.=.. +. ..-|+ + |+.+..+|+|+....|.-+|
T Consensus 355 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~G~P~W 434 (453)
T PLN03098 355 AAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPEW 434 (453)
T ss_pred hhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCCCCCCH
Confidence 000 1111111 111124665432100 00 01122 2 89999999999999999999
Q ss_pred HHHHHHH
Q 004302 216 GMLNKAV 222 (762)
Q Consensus 216 ~~L~~~l 222 (762)
..|.+.|
T Consensus 435 ~~~v~eL 441 (453)
T PLN03098 435 QEIVKEL 441 (453)
T ss_pred HHHHHhC
Confidence 8876543
No 466
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=21.55 E-value=3e+02 Score=26.28 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=47.1
Q ss_pred hcHHHHHHHHHCCC--eEEEEEEcCCCccCcCCHHHHHHHHHhcCC---CcceeeCCCCccccccCceEEEEcCCCCEEE
Q 004302 133 TFEKVKSIQQSFPQ--LQVIGFLHGCSTISAVDQTRLVEMLMKEYI---TFPILLSNKNFPQMENGACYLLSKDFGNARV 207 (762)
Q Consensus 133 emP~L~~L~~~y~~--v~VvgV~~~~~~~~e~~~~~v~~f~~k~~i---tfPVl~D~~~~~~~~ygv~t~lId~~G~iv~ 207 (762)
-...|.++.++|++ +.++-++.+. ... +++..++ .||. .++++.++. ++
T Consensus 42 ~~~~l~~vAk~~kgk~i~Fv~vd~~~-------~~~---~~~~fgl~~~~~P~---------------v~i~~~~~~-KY 95 (130)
T cd02983 42 YLEILKSVAEKFKKKPWGWLWTEAGA-------QLD---LEEALNIGGFGYPA---------------MVAINFRKM-KF 95 (130)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeCcc-------cHH---HHHHcCCCccCCCE---------------EEEEecccC-cc
Confidence 36678888888886 7777776654 122 4444454 2453 234444443 44
Q ss_pred E-ecCCcCHHHHHHHHHHHHHhhc
Q 004302 208 F-HENSLDIGMLNKAVEELIMQQQ 230 (762)
Q Consensus 208 ~-~~G~~~~~~L~~~l~~ll~~~~ 230 (762)
. ..|+.+.+.+.+.++.++....
T Consensus 96 ~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 96 ATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred ccccCccCHHHHHHHHHHHHcCCc
Confidence 4 6788999999999999888653
No 467
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.50 E-value=1e+03 Score=25.56 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=66.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCC-CcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeC
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDGN-GKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADM 348 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~~-G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~ 348 (762)
+++..-++-+|++-+....|+.+|.. ...+..+++ .+.||..++ ..-..+++|| .|+|.++--....-..+|.
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~--~~~~~gles---savaav~vdp-sgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN--DFHDGGLES---SAVAAVAVDP-SGRLLASGHADSSCMLYDI 260 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccC--cccCCCccc---ceeEEEEECC-CcceeeeccCCCceEEEEe
Confidence 44444566667777777777777762 233444443 233333222 2346789998 6788887665555555665
Q ss_pred CCC-EEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCCCCCCCcceEEEcCCCcEEEEECCCCEEEEEECCC
Q 004302 349 GRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLAS 426 (762)
Q Consensus 349 ~~g-~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~ 426 (762)
.++ .|..+.+.. ..-+.|.++|.-....+-++...|+.-|+++
T Consensus 261 rg~r~iq~f~phs-----------------------------------adir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 261 RGGRMIQRFHPHS-----------------------------------ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eCCceeeeeCCCc-----------------------------------cceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 443 344442221 0134566777666666777888888888765
No 468
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.94 E-value=5e+02 Score=31.44 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=78.3
Q ss_pred ccchhhhhhhhccCCCCcccccCcccCCcc---eEEEccCCCEEEE--EeCCCcEEEEEcCCC-cEEEEecCCCCCCCCc
Q 004302 239 LKCTWAKQAEVLKEPHACSSVRNLLLHFPG---CISADESGNRLFL--SDSNHHRIIVFDGNG-KILDCIGSCPGFEDGE 312 (762)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~P~---gIAVD~s~g~LYV--ADs~nhrI~v~d~~G-~i~~~iGsG~G~~DG~ 312 (762)
+..+|.+...-..+..+|. .+..|. .|.-...++.|.+ .|.+|.+|++.+..- +...-|-.
T Consensus 498 ~~~~W~~~~~~e~~~~v~~-----~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-------- 564 (733)
T KOG0650|consen 498 AVVTWSRASLDELEKGVCI-----VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-------- 564 (733)
T ss_pred cceeechhhhhhhccceEE-----EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh--------
Confidence 4456777544444433333 344443 3455545555543 456777888777632 22211100
Q ss_pred ccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCCCCEEEEEeecCCCCCCCCchhhhhhhccCccccCCCccCCCCC
Q 004302 313 FESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDP 392 (762)
Q Consensus 313 ~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~~g~I~TiaG~G~~~~~G~~~~~~~~~~~G~~~~~~~~~~~~~~ 392 (762)
.=-.|+.+.++|..-+||||-.. -||.+|+....+..-+=+|
T Consensus 565 ----skG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelvKkL~tg-------------------------------- 606 (733)
T KOG0650|consen 565 ----SKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELVKKLLTG-------------------------------- 606 (733)
T ss_pred ----cCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHHHHHhcC--------------------------------
Confidence 01248889999999999999864 4888887543221110000
Q ss_pred CCCCCcceEEEcCCCcEEEEECCCCEEEEEECCCC
Q 004302 393 QSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASG 427 (762)
Q Consensus 393 ~~L~~P~gIavd~dG~LYVAD~gN~rI~v~d~~~g 427 (762)
..+-..+++.++|.=.|.-.+.+++..||++-+
T Consensus 607 --~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 607 --SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred --CeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 224557888887765666667788888888643
No 469
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=20.66 E-value=1.3e+02 Score=28.07 Aligned_cols=62 Identities=8% Similarity=-0.088 Sum_probs=37.8
Q ss_pred EEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCcccc
Q 004302 114 AGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQM 190 (762)
Q Consensus 114 nFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~ 190 (762)
-|+..+|+.| ++.+-.|++- ++.+.-+++.+ ...+.+.+.+++++.+..+--+++..+..++
T Consensus 3 iY~~~~C~~c-------~ka~~~L~~~-----~i~~~~idi~~---~~~~~~el~~l~~~~~~~~~~lin~~~~~~k 64 (117)
T TIGR01617 3 VYGSPNCTTC-------KKARRWLEAN-----GIEYQFIDIGE---DGPTREELLDILSLLEDGIDPLLNTRGQSYR 64 (117)
T ss_pred EEeCCCCHHH-------HHHHHHHHHc-----CCceEEEecCC---ChhhHHHHHHHHHHcCCCHHHheeCCCcchh
Confidence 3677888755 8888777763 43333444332 1236778999999998766544444444333
No 470
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=20.51 E-value=1.3e+02 Score=31.56 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=55.0
Q ss_pred ccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcc
Q 004302 100 NIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFP 179 (762)
Q Consensus 100 ~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfP 179 (762)
.++.+. +|-||||+.+.---+-| .--..+|+.|.-+||++.||-|-... .+ -+||
T Consensus 104 EVT~As-~gvwVvvhLy~~gvp~c-------~Ll~~~l~~la~kfp~iKFVki~at~---------cI--------pNYP 158 (240)
T KOG3170|consen 104 EVTKAS-EGVWVVVHLYKQGVPLC-------ALLSHHLQSLACKFPQIKFVKIPATT---------CI--------PNYP 158 (240)
T ss_pred HHHhcc-CccEEEEEeeccccHHH-------HHHHHHHHHHhhcCCcceEEeccccc---------cc--------CCCc
Confidence 355544 59999999998877644 88888999999999997776653221 00 0122
Q ss_pred eeeCCCCccccccCceEEEEcCCCCEEEEecCCcC
Q 004302 180 ILLSNKNFPQMENGACYLLSKDFGNARVFHENSLD 214 (762)
Q Consensus 180 Vl~D~~~~~~~~ygv~t~lId~~G~iv~~~~G~~~ 214 (762)
= -..||+|+=-.|.+..+++|...
T Consensus 159 e-----------~nlPTl~VY~~G~lk~q~igll~ 182 (240)
T KOG3170|consen 159 E-----------SNLPTLLVYHHGALKKQMIGLLE 182 (240)
T ss_pred c-----------cCCCeEEEeecchHHhheehhhh
Confidence 1 13678888888999888777544
No 471
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=20.46 E-value=7.5e+02 Score=26.96 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=50.7
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEEcC-CCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEE
Q 004302 268 GCISADESGNRLFLSDSNHHRIIVFDG-NGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRA 346 (762)
Q Consensus 268 ~gIAVD~s~g~LYVADs~nhrI~v~d~-~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRki 346 (762)
..+.+||+.+.|+.|- +..+|+.+|. +|+|.+.+- |..| +-+.++.-..++.| .+-.+.+.+|.+
T Consensus 118 Nam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r---GHtD---------YvH~vv~R~~~~qi-lsG~EDGtvRvW 183 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR---GHTD---------YVHSVVGRNANGQI-LSGAEDGTVRVW 183 (325)
T ss_pred ceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc---CCcc---------eeeeeeecccCcce-eecCCCccEEEE
Confidence 3567888899999887 8999999998 799998874 3222 12334332223444 245667889999
Q ss_pred eCCCC-EEEEE
Q 004302 347 DMGRR-VLETV 356 (762)
Q Consensus 347 d~~~g-~I~Ti 356 (762)
|..++ .++++
T Consensus 184 d~kt~k~v~~i 194 (325)
T KOG0649|consen 184 DTKTQKHVSMI 194 (325)
T ss_pred eccccceeEEe
Confidence 98765 55555
No 472
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=1.7e+02 Score=30.31 Aligned_cols=45 Identities=9% Similarity=-0.105 Sum_probs=35.9
Q ss_pred cCCCccccCCCCCCEEEEEEeccCCCCccCCCCcchhhcHHHHHHHHHCCCe
Q 004302 96 IVEDNIHFFKRGGAFLVLAGRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQL 147 (762)
Q Consensus 96 ~~g~~v~Lsd~rGK~VvLnFWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v 147 (762)
.++....+-+..+++.++-|.-.-|+ +| .+.+|.|++.+..++++
T Consensus 72 ~~~~~~~~G~~~~~v~v~~f~d~~Cp-----~C--~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 72 PDGKDVVLGNPYAPVTVVEFFDYTCP-----YC--KEAFPELKKKYIDDGKV 116 (244)
T ss_pred CCCCcccccCCCCCceEEEEecCcCc-----cH--HHHHHHHHHHhhhcCCC
Confidence 34445556666779999999999997 55 99999999988888873
No 473
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=20.18 E-value=4.1e+02 Score=22.93 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=46.0
Q ss_pred EeccCCCCccCCCCcchhhcHHHHHHHHHCCCeEEEEEEcCCCccCcCCHHHHHHHHHhcCCCcceeeCCCCccccccCc
Q 004302 115 GRFVDNCDSLIAGCGTVVTFEKVKSIQQSFPQLQVIGFLHGCSTISAVDQTRLVEMLMKEYITFPILLSNKNFPQMENGA 194 (762)
Q Consensus 115 FWAtWC~pC~~p~C~~~~emP~L~~L~~~y~~v~VvgV~~~~~~~~e~~~~~v~~f~~k~~itfPVl~D~~~~~~~~ygv 194 (762)
|=-.-|+=| ...-..|..+....+ +.+--|++++ +.+ +.++++..-||+.-++.....
T Consensus 5 ~~k~~C~LC-------~~a~~~L~~~~~~~~-~~l~~vDI~~------d~~----l~~~Y~~~IPVl~~~~~~~~~---- 62 (81)
T PF05768_consen 5 YTKPGCHLC-------DEAKEILEEVAAEFP-FELEEVDIDE------DPE----LFEKYGYRIPVLHIDGIRQFK---- 62 (81)
T ss_dssp EE-SSSHHH-------HHHHHHHHHCCTTST-CEEEEEETTT------THH----HHHHSCTSTSEEEETT-GGGC----
T ss_pred EcCCCCChH-------HHHHHHHHHHHhhcC-ceEEEEECCC------CHH----HHHHhcCCCCEEEEcCccccc----
Confidence 334566544 777777777655444 7777777765 333 677899888988755521000
Q ss_pred eEEEEcCCCCEEEEecCCcCHHHHHHHHH
Q 004302 195 CYLLSKDFGNARVFHENSLDIGMLNKAVE 223 (762)
Q Consensus 195 ~t~lId~~G~iv~~~~G~~~~~~L~~~l~ 223 (762)
......+..+.+.|.++|+
T Consensus 63 ----------~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 63 ----------EQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ----------TSEEEESSB-HHHHHHHHH
T ss_pred ----------ccceeCCCCCHHHHHHHhC
Confidence 0223566788888887764
No 474
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=20.04 E-value=8.4e+02 Score=27.48 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=53.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCcEEEEecCCCCCCCCcccccccCCcceEEEecCCCeEEEEeCCCCeEEEEeCC
Q 004302 270 ISADESGNRLFLSDSNHHRIIVFDGNGKILDCIGSCPGFEDGEFESSKLMRPAASFYHKDDDCLYIVDSENHAIRRADMG 349 (762)
Q Consensus 270 IAVD~s~g~LYVADs~nhrI~v~d~~G~i~~~iGsG~G~~DG~~~~a~fn~P~GIavd~~~g~LYVADt~NhrIRkid~~ 349 (762)
|..-|++-.-||.-...+.|++.+..|++++.+-+|. .+.|++.. -+++|.++++|..- +...+..|+..
T Consensus 398 v~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk-REgGdFi~--------~~lSpkGewiYcig-ED~vlYCF~~~ 467 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK-REGGDFIN--------AILSPKGEWIYCIG-EDGVLYCFSVL 467 (508)
T ss_pred EEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC-ccCCceEE--------EEecCCCcEEEEEc-cCcEEEEEEee
Confidence 3334556555666667788999999999999987751 11233322 35667778888765 45678888877
Q ss_pred CCEEEEEeecC
Q 004302 350 RRVLETVYPTS 360 (762)
Q Consensus 350 ~g~I~TiaG~G 360 (762)
+|.+.+.....
T Consensus 468 sG~LE~tl~Vh 478 (508)
T KOG0275|consen 468 SGKLERTLPVH 478 (508)
T ss_pred cCceeeeeecc
Confidence 77777665543
Done!